xref: /petsc/src/dm/impls/da/dacreate.c (revision b698f38184bb2d8cca5de7f5c9c4b2ba4d75311d)
17d0a6c19SBarry Smith 
2af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h>    /*I   "petscdmda.h"   I*/
347c6ae99SBarry Smith 
447c6ae99SBarry Smith #undef __FUNCT__
59a42bb27SBarry Smith #define __FUNCT__ "DMSetFromOptions_DA"
64416b707SBarry Smith PetscErrorCode  DMSetFromOptions_DA(PetscOptionItems *PetscOptionsObject,DM da)
747c6ae99SBarry Smith {
847c6ae99SBarry Smith   PetscErrorCode ierr;
947c6ae99SBarry Smith   DM_DA          *dd    = (DM_DA*)da->data;
10c73cfb54SMatthew G. Knepley   PetscInt       refine = 0,dim = da->dim,maxnlevels = 100,refx[100],refy[100],refz[100],n,i;
1112655325SBarry Smith   PetscBool      bM     = PETSC_FALSE,bN = PETSC_FALSE, bP = PETSC_FALSE,flg;
1247c6ae99SBarry Smith 
1347c6ae99SBarry Smith   PetscFunctionBegin;
1447c6ae99SBarry Smith   PetscValidHeaderSpecific(da,DM_CLASSID,1);
1547c6ae99SBarry Smith 
1647c6ae99SBarry Smith   if (dd->M < 0) {
17235683edSBarry Smith     dd->M           = -dd->M;
18235683edSBarry Smith     bM              = PETSC_TRUE;
193e211508SBarry Smith     dd->negativeMNP = PETSC_TRUE;
2047c6ae99SBarry Smith   }
2112655325SBarry Smith   if (da->dim > 1 && dd->N < 0) {
22235683edSBarry Smith     dd->N           = -dd->N;
23235683edSBarry Smith     bN              = PETSC_TRUE;
243e211508SBarry Smith     dd->negativeMNP = PETSC_TRUE;
2547c6ae99SBarry Smith   }
2612655325SBarry Smith   if (da->dim > 2 && dd->P < 0) {
27235683edSBarry Smith     dd->P           = -dd->P;
28235683edSBarry Smith     bP              = PETSC_TRUE;
293e211508SBarry Smith     dd->negativeMNP = PETSC_TRUE;
3047c6ae99SBarry Smith   }
31235683edSBarry Smith 
32e55864a3SBarry Smith   ierr = PetscOptionsHead(PetscOptionsObject,"DMDA Options");CHKERRQ(ierr);
330298fd71SBarry Smith   if (bM) {ierr = PetscOptionsInt("-da_grid_x","Number of grid points in x direction","DMDASetSizes",dd->M,&dd->M,NULL);CHKERRQ(ierr);}
340298fd71SBarry Smith   if (bN) {ierr = PetscOptionsInt("-da_grid_y","Number of grid points in y direction","DMDASetSizes",dd->N,&dd->N,NULL);CHKERRQ(ierr);}
350298fd71SBarry Smith   if (bP) {ierr = PetscOptionsInt("-da_grid_z","Number of grid points in z direction","DMDASetSizes",dd->P,&dd->P,NULL);CHKERRQ(ierr);}
367ddda789SPeter Brune 
377ddda789SPeter Brune   ierr = PetscOptionsInt("-da_overlap","Decomposition overlap in all directions","DMDASetOverlap",dd->xol,&dd->xol,&flg);CHKERRQ(ierr);
387ddda789SPeter Brune   if (flg) {ierr = DMDASetOverlap(da,dd->xol,dd->xol,dd->xol);CHKERRQ(ierr);}
397ddda789SPeter Brune   ierr = PetscOptionsInt("-da_overlap_x","Decomposition overlap in x direction","DMDASetOverlap",dd->xol,&dd->xol,NULL);CHKERRQ(ierr);
40c73cfb54SMatthew G. Knepley   if (dim > 1) {ierr = PetscOptionsInt("-da_overlap_y","Decomposition overlap in y direction","DMDASetOverlap",dd->yol,&dd->yol,NULL);CHKERRQ(ierr);}
41c73cfb54SMatthew G. Knepley   if (dim > 2) {ierr = PetscOptionsInt("-da_overlap_z","Decomposition overlap in z direction","DMDASetOverlap",dd->zol,&dd->zol,NULL);CHKERRQ(ierr);}
423e7870d2SPeter Brune 
433e7870d2SPeter Brune   ierr = PetscOptionsInt("-da_local_subdomains","","DMDASetNumLocalSubdomains",dd->Nsub,&dd->Nsub,&flg);CHKERRQ(ierr);
443e7870d2SPeter Brune   if (flg) {ierr = DMDASetNumLocalSubDomains(da,dd->Nsub);CHKERRQ(ierr);}
453e7870d2SPeter Brune 
46aa219208SBarry Smith   /* Handle DMDA parallel distibution */
470298fd71SBarry Smith   ierr = PetscOptionsInt("-da_processors_x","Number of processors in x direction","DMDASetNumProcs",dd->m,&dd->m,NULL);CHKERRQ(ierr);
48c73cfb54SMatthew G. Knepley   if (dim > 1) {ierr = PetscOptionsInt("-da_processors_y","Number of processors in y direction","DMDASetNumProcs",dd->n,&dd->n,NULL);CHKERRQ(ierr);}
49c73cfb54SMatthew G. Knepley   if (dim > 2) {ierr = PetscOptionsInt("-da_processors_z","Number of processors in z direction","DMDASetNumProcs",dd->p,&dd->p,NULL);CHKERRQ(ierr);}
50aa219208SBarry Smith   /* Handle DMDA refinement */
510298fd71SBarry Smith   ierr = PetscOptionsInt("-da_refine_x","Refinement ratio in x direction","DMDASetRefinementFactor",dd->refine_x,&dd->refine_x,NULL);CHKERRQ(ierr);
52c73cfb54SMatthew G. Knepley   if (dim > 1) {ierr = PetscOptionsInt("-da_refine_y","Refinement ratio in y direction","DMDASetRefinementFactor",dd->refine_y,&dd->refine_y,NULL);CHKERRQ(ierr);}
53c73cfb54SMatthew G. Knepley   if (dim > 2) {ierr = PetscOptionsInt("-da_refine_z","Refinement ratio in z direction","DMDASetRefinementFactor",dd->refine_z,&dd->refine_z,NULL);CHKERRQ(ierr);}
5438fb6c91SJed Brown   dd->coarsen_x = dd->refine_x; dd->coarsen_y = dd->refine_y; dd->coarsen_z = dd->refine_z;
5547c6ae99SBarry Smith 
56397b6216SJed Brown   /* Get refinement factors, defaults taken from the coarse DMDA */
57397b6216SJed Brown   ierr = DMDAGetRefinementFactor(da,&refx[0],&refy[0],&refz[0]);CHKERRQ(ierr);
58397b6216SJed Brown   for (i=1; i<maxnlevels; i++) {
59397b6216SJed Brown     refx[i] = refx[0];
60397b6216SJed Brown     refy[i] = refy[0];
61397b6216SJed Brown     refz[i] = refz[0];
62397b6216SJed Brown   }
63397b6216SJed Brown   n    = maxnlevels;
64c5929fdfSBarry Smith   ierr = PetscOptionsIntArray("-da_refine_hierarchy_x","Refinement factor for each level","None",refx,&n,NULL);CHKERRQ(ierr);
65397b6216SJed Brown   if (da->levelup - da->leveldown >= 0) dd->refine_x = refx[da->levelup - da->leveldown];
66397b6216SJed Brown   if (da->levelup - da->leveldown >= 1) dd->coarsen_x = refx[da->levelup - da->leveldown - 1];
67c73cfb54SMatthew G. Knepley   if (dim > 1) {
68397b6216SJed Brown     n    = maxnlevels;
69c5929fdfSBarry Smith     ierr = PetscOptionsIntArray("-da_refine_hierarchy_y","Refinement factor for each level","None",refy,&n,NULL);CHKERRQ(ierr);
70397b6216SJed Brown     if (da->levelup - da->leveldown >= 0) dd->refine_y = refy[da->levelup - da->leveldown];
71397b6216SJed Brown     if (da->levelup - da->leveldown >= 1) dd->coarsen_y = refy[da->levelup - da->leveldown - 1];
72397b6216SJed Brown   }
73c73cfb54SMatthew G. Knepley   if (dim > 2) {
74397b6216SJed Brown     n    = maxnlevels;
75c5929fdfSBarry Smith     ierr = PetscOptionsIntArray("-da_refine_hierarchy_z","Refinement factor for each level","None",refz,&n,NULL);CHKERRQ(ierr);
76397b6216SJed Brown     if (da->levelup - da->leveldown >= 0) dd->refine_z = refz[da->levelup - da->leveldown];
77397b6216SJed Brown     if (da->levelup - da->leveldown >= 1) dd->coarsen_z = refz[da->levelup - da->leveldown - 1];
78397b6216SJed Brown   }
79397b6216SJed Brown 
803e211508SBarry Smith   if (dd->negativeMNP) {ierr = PetscOptionsInt("-da_refine","Uniformly refine DA one or more times","None",refine,&refine,NULL);CHKERRQ(ierr);}
81f9ba7244SBarry Smith   ierr = PetscOptionsTail();CHKERRQ(ierr);
82235683edSBarry Smith 
83e0f5d30fSBarry Smith   while (refine--) {
84bff4a2f0SMatthew G. Knepley     if (dd->bx == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) {
85e0f5d30fSBarry Smith       dd->M = dd->refine_x*dd->M;
86e0f5d30fSBarry Smith     } else {
87e0f5d30fSBarry Smith       dd->M = 1 + dd->refine_x*(dd->M - 1);
88e0f5d30fSBarry Smith     }
89bff4a2f0SMatthew G. Knepley     if (dd->by == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) {
90e0f5d30fSBarry Smith       dd->N = dd->refine_y*dd->N;
91e0f5d30fSBarry Smith     } else {
92e0f5d30fSBarry Smith       dd->N = 1 + dd->refine_y*(dd->N - 1);
93e0f5d30fSBarry Smith     }
94bff4a2f0SMatthew G. Knepley     if (dd->bz == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) {
95e0f5d30fSBarry Smith       dd->P = dd->refine_z*dd->P;
96e0f5d30fSBarry Smith     } else {
97e0f5d30fSBarry Smith       dd->P = 1 + dd->refine_z*(dd->P - 1);
98e0f5d30fSBarry Smith     }
99e0f5d30fSBarry Smith     da->levelup++;
10085fc4b34SJed Brown     if (da->levelup - da->leveldown >= 0) {
10185fc4b34SJed Brown       dd->refine_x = refx[da->levelup - da->leveldown];
10285fc4b34SJed Brown       dd->refine_y = refy[da->levelup - da->leveldown];
10385fc4b34SJed Brown       dd->refine_z = refz[da->levelup - da->leveldown];
10485fc4b34SJed Brown     }
10585fc4b34SJed Brown     if (da->levelup - da->leveldown >= 1) {
10685fc4b34SJed Brown       dd->coarsen_x = refx[da->levelup - da->leveldown - 1];
10785fc4b34SJed Brown       dd->coarsen_y = refy[da->levelup - da->leveldown - 1];
10885fc4b34SJed Brown       dd->coarsen_z = refz[da->levelup - da->leveldown - 1];
10985fc4b34SJed Brown     }
110e0f5d30fSBarry Smith   }
11147c6ae99SBarry Smith   PetscFunctionReturn(0);
11247c6ae99SBarry Smith }
11347c6ae99SBarry Smith 
1147087cfbeSBarry Smith extern PetscErrorCode  DMCreateGlobalVector_DA(DM,Vec*);
1157087cfbeSBarry Smith extern PetscErrorCode  DMCreateLocalVector_DA(DM,Vec*);
1167087cfbeSBarry Smith extern PetscErrorCode  DMGlobalToLocalBegin_DA(DM,Vec,InsertMode,Vec);
1177087cfbeSBarry Smith extern PetscErrorCode  DMGlobalToLocalEnd_DA(DM,Vec,InsertMode,Vec);
1187087cfbeSBarry Smith extern PetscErrorCode  DMLocalToGlobalBegin_DA(DM,Vec,InsertMode,Vec);
1197087cfbeSBarry Smith extern PetscErrorCode  DMLocalToGlobalEnd_DA(DM,Vec,InsertMode,Vec);
120d78e899eSRichard Tran Mills extern PetscErrorCode  DMLocalToLocalBegin_DA(DM,Vec,InsertMode,Vec);
121d78e899eSRichard Tran Mills extern PetscErrorCode  DMLocalToLocalEnd_DA(DM,Vec,InsertMode,Vec);
122e727c939SJed Brown extern PetscErrorCode  DMCreateInterpolation_DA(DM,DM,Mat*,Vec*);
123b412c318SBarry Smith extern PetscErrorCode  DMCreateColoring_DA(DM,ISColoringType,ISColoring*);
124b412c318SBarry Smith extern PetscErrorCode  DMCreateMatrix_DA(DM,Mat*);
1256636e97aSMatthew G Knepley extern PetscErrorCode  DMCreateCoordinateDM_DA(DM,DM*);
1267087cfbeSBarry Smith extern PetscErrorCode  DMRefine_DA(DM,MPI_Comm,DM*);
1277087cfbeSBarry Smith extern PetscErrorCode  DMCoarsen_DA(DM,MPI_Comm,DM*);
1287087cfbeSBarry Smith extern PetscErrorCode  DMRefineHierarchy_DA(DM,PetscInt,DM[]);
1297087cfbeSBarry Smith extern PetscErrorCode  DMCoarsenHierarchy_DA(DM,PetscInt,DM[]);
1306dbf9973SLawrence Mitchell extern PetscErrorCode  DMCreateInjection_DA(DM,DM,Mat*);
131e727c939SJed Brown extern PetscErrorCode  DMCreateAggregates_DA(DM,DM,Mat*);
1327087cfbeSBarry Smith extern PetscErrorCode  DMView_DA(DM,PetscViewer);
1337087cfbeSBarry Smith extern PetscErrorCode  DMSetUp_DA(DM);
1347087cfbeSBarry Smith extern PetscErrorCode  DMDestroy_DA(DM);
135e30e807fSPeter Brune extern PetscErrorCode  DMCreateDomainDecomposition_DA(DM,PetscInt*,char***,IS**,IS**,DM**);
136e30e807fSPeter Brune extern PetscErrorCode  DMCreateDomainDecompositionScatters_DA(DM,PetscInt,DM*,VecScatter**,VecScatter**,VecScatter**);
1379a42bb27SBarry Smith 
138b859378eSBarry Smith #undef __FUNCT__
139b859378eSBarry Smith #define __FUNCT__ "DMLoad_DA"
140b859378eSBarry Smith PetscErrorCode DMLoad_DA(DM da,PetscViewer viewer)
141b859378eSBarry Smith {
142b859378eSBarry Smith   PetscErrorCode   ierr;
143060da220SMatthew G. Knepley   PetscInt         dim,m,n,p,dof,swidth;
144b859378eSBarry Smith   DMDAStencilType  stencil;
145bff4a2f0SMatthew G. Knepley   DMBoundaryType   bx,by,bz;
146bc2bf880SBarry Smith   PetscBool        coors;
147bc2bf880SBarry Smith   DM               dac;
148bc2bf880SBarry Smith   Vec              c;
149b859378eSBarry Smith 
150b859378eSBarry Smith   PetscFunctionBegin;
151060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&dim,1,NULL,PETSC_INT);CHKERRQ(ierr);
152060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&m,1,NULL,PETSC_INT);CHKERRQ(ierr);
153060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&n,1,NULL,PETSC_INT);CHKERRQ(ierr);
154060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&p,1,NULL,PETSC_INT);CHKERRQ(ierr);
155060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&dof,1,NULL,PETSC_INT);CHKERRQ(ierr);
156060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&swidth,1,NULL,PETSC_INT);CHKERRQ(ierr);
157060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&bx,1,NULL,PETSC_ENUM);CHKERRQ(ierr);
158060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&by,1,NULL,PETSC_ENUM);CHKERRQ(ierr);
159060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&bz,1,NULL,PETSC_ENUM);CHKERRQ(ierr);
160060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&stencil,1,NULL,PETSC_ENUM);CHKERRQ(ierr);
161b859378eSBarry Smith 
162c73cfb54SMatthew G. Knepley   ierr = DMSetDimension(da, dim);CHKERRQ(ierr);
163bc2bf880SBarry Smith   ierr = DMDASetSizes(da, m,n,p);CHKERRQ(ierr);
164b859378eSBarry Smith   ierr = DMDASetBoundaryType(da, bx, by, bz);CHKERRQ(ierr);
165b859378eSBarry Smith   ierr = DMDASetDof(da, dof);CHKERRQ(ierr);
166b859378eSBarry Smith   ierr = DMDASetStencilType(da, stencil);CHKERRQ(ierr);
167b859378eSBarry Smith   ierr = DMDASetStencilWidth(da, swidth);CHKERRQ(ierr);
168b859378eSBarry Smith   ierr = DMSetUp(da);CHKERRQ(ierr);
169060da220SMatthew G. Knepley   ierr = PetscViewerBinaryRead(viewer,&coors,1,NULL,PETSC_ENUM);CHKERRQ(ierr);
170bc2bf880SBarry Smith   if (coors) {
1716636e97aSMatthew G Knepley     ierr = DMGetCoordinateDM(da,&dac);CHKERRQ(ierr);
172bc2bf880SBarry Smith     ierr = DMCreateGlobalVector(dac,&c);CHKERRQ(ierr);
173bc2bf880SBarry Smith     ierr = VecLoad(c,viewer);CHKERRQ(ierr);
1746636e97aSMatthew G Knepley     ierr = DMSetCoordinates(da,c);CHKERRQ(ierr);
175bc2bf880SBarry Smith     ierr = VecDestroy(&c);CHKERRQ(ierr);
176bc2bf880SBarry Smith   }
177b859378eSBarry Smith   PetscFunctionReturn(0);
178b859378eSBarry Smith }
179b859378eSBarry Smith 
1801c3fb106SBarry Smith #undef __FUNCT__
181d724dfffSBarry Smith #define __FUNCT__ "DMCreateSubDM_DA"
182d724dfffSBarry Smith PetscErrorCode DMCreateSubDM_DA(DM dm, PetscInt numFields, PetscInt fields[], IS *is, DM *subdm)
183d724dfffSBarry Smith {
184d724dfffSBarry Smith   DM_DA         *da = (DM_DA*) dm->data;
1854d9407bcSMatthew G. Knepley   PetscSection   section;
1864d9407bcSMatthew G. Knepley   PetscErrorCode ierr;
187d724dfffSBarry Smith 
188d724dfffSBarry Smith   PetscFunctionBegin;
189d724dfffSBarry Smith   if (subdm) {
190c38c1269SMatthew G. Knepley     PetscSF sf;
191c38c1269SMatthew G. Knepley     Vec     coords;
192c38c1269SMatthew G. Knepley     void   *ctx;
193c38c1269SMatthew G. Knepley     /* Cannot use DMClone since the dof stuff is mixed in. Ugh
194c38c1269SMatthew G. Knepley     ierr = DMClone(dm, subdm);CHKERRQ(ierr); */
195c38c1269SMatthew G. Knepley     ierr = DMCreate(PetscObjectComm((PetscObject)dm), subdm);CHKERRQ(ierr);
196c38c1269SMatthew G. Knepley     ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr);
197c38c1269SMatthew G. Knepley     ierr = DMSetPointSF(*subdm, sf);CHKERRQ(ierr);
198c38c1269SMatthew G. Knepley     ierr = DMGetApplicationContext(dm, &ctx);CHKERRQ(ierr);
199c38c1269SMatthew G. Knepley     ierr = DMSetApplicationContext(*subdm, ctx);CHKERRQ(ierr);
200c38c1269SMatthew G. Knepley     ierr = DMGetCoordinatesLocal(dm, &coords);CHKERRQ(ierr);
201c38c1269SMatthew G. Knepley     if (coords) {
202c38c1269SMatthew G. Knepley       ierr = DMSetCoordinatesLocal(*subdm, coords);CHKERRQ(ierr);
203c38c1269SMatthew G. Knepley     } else {
204c38c1269SMatthew G. Knepley       ierr = DMGetCoordinates(dm, &coords);CHKERRQ(ierr);
205c38c1269SMatthew G. Knepley       if (coords) {ierr = DMSetCoordinates(*subdm, coords);CHKERRQ(ierr);}
206c38c1269SMatthew G. Knepley     }
207c38c1269SMatthew G. Knepley 
208c38c1269SMatthew G. Knepley     ierr = DMSetType(*subdm, DMDA);CHKERRQ(ierr);
209c73cfb54SMatthew G. Knepley     ierr = DMSetDimension(*subdm, dm->dim);CHKERRQ(ierr);
210c38c1269SMatthew G. Knepley     ierr = DMDASetSizes(*subdm, da->M, da->N, da->P);CHKERRQ(ierr);
211c38c1269SMatthew G. Knepley     ierr = DMDASetNumProcs(*subdm, da->m, da->n, da->p);CHKERRQ(ierr);
212c38c1269SMatthew G. Knepley     ierr = DMDASetBoundaryType(*subdm, da->bx, da->by, da->bz);CHKERRQ(ierr);
21338221697SMatthew G. Knepley     ierr = DMDASetDof(*subdm, numFields);CHKERRQ(ierr);
214c38c1269SMatthew G. Knepley     ierr = DMDASetStencilType(*subdm, da->stencil_type);CHKERRQ(ierr);
215c38c1269SMatthew G. Knepley     ierr = DMDASetStencilWidth(*subdm, da->s);CHKERRQ(ierr);
216c38c1269SMatthew G. Knepley     ierr = DMDASetOwnershipRanges(*subdm, da->lx, da->ly, da->lz);CHKERRQ(ierr);
217d724dfffSBarry Smith   }
2184d9407bcSMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
2194d9407bcSMatthew G. Knepley   if (section) {
2204d9407bcSMatthew G. Knepley     ierr = DMCreateSubDM_Section_Private(dm, numFields, fields, is, subdm);CHKERRQ(ierr);
2214d9407bcSMatthew G. Knepley   } else {
222d724dfffSBarry Smith     if (is) {
223d724dfffSBarry Smith       PetscInt *indices, cnt = 0, dof = da->w, i, j;
22438221697SMatthew G. Knepley 
225785e854fSJed Brown       ierr = PetscMalloc1(da->Nlocal*numFields/dof, &indices);CHKERRQ(ierr);
22638221697SMatthew G. Knepley       for (i = da->base/dof; i < (da->base+da->Nlocal)/dof; ++i) {
22738221697SMatthew G. Knepley         for (j = 0; j < numFields; ++j) {
228d724dfffSBarry Smith           indices[cnt++] = dof*i + fields[j];
229d724dfffSBarry Smith         }
230d724dfffSBarry Smith       }
23138221697SMatthew G. Knepley       if (cnt != da->Nlocal*numFields/dof) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Count %d does not equal expected value %d", cnt, da->Nlocal*numFields/dof);
23238221697SMatthew G. Knepley       ierr = ISCreateGeneral(PetscObjectComm((PetscObject) dm), cnt, indices, PETSC_OWN_POINTER, is);CHKERRQ(ierr);
233d724dfffSBarry Smith     }
234d724dfffSBarry Smith   }
235d724dfffSBarry Smith   PetscFunctionReturn(0);
236d724dfffSBarry Smith }
237d724dfffSBarry Smith 
238d724dfffSBarry Smith #undef __FUNCT__
23916621825SDmitry Karpeev #define __FUNCT__ "DMCreateFieldDecomposition_DA"
24016621825SDmitry Karpeev PetscErrorCode DMCreateFieldDecomposition_DA(DM dm, PetscInt *len,char ***namelist, IS **islist, DM **dmlist)
2411c3fb106SBarry Smith {
2421c3fb106SBarry Smith   PetscInt       i;
2431c3fb106SBarry Smith   PetscErrorCode ierr;
2441c3fb106SBarry Smith   DM_DA          *dd = (DM_DA*)dm->data;
2451c3fb106SBarry Smith   PetscInt       dof = dd->w;
2461c3fb106SBarry Smith 
2471c3fb106SBarry Smith   PetscFunctionBegin;
248731c8d9eSDmitry Karpeev   if (len) *len = dof;
2491c3fb106SBarry Smith   if (islist) {
2501c3fb106SBarry Smith     Vec      v;
2511c3fb106SBarry Smith     PetscInt rstart,n;
2521c3fb106SBarry Smith 
2531c3fb106SBarry Smith     ierr = DMGetGlobalVector(dm,&v);CHKERRQ(ierr);
2540298fd71SBarry Smith     ierr = VecGetOwnershipRange(v,&rstart,NULL);CHKERRQ(ierr);
2551c3fb106SBarry Smith     ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
2561c3fb106SBarry Smith     ierr = DMRestoreGlobalVector(dm,&v);CHKERRQ(ierr);
257785e854fSJed Brown     ierr = PetscMalloc1(dof,islist);CHKERRQ(ierr);
2581c3fb106SBarry Smith     for (i=0; i<dof; i++) {
259ce94432eSBarry Smith       ierr = ISCreateStride(PetscObjectComm((PetscObject)dm),n/dof,rstart+i,dof,&(*islist)[i]);CHKERRQ(ierr);
2601c3fb106SBarry Smith     }
2611c3fb106SBarry Smith   }
2621c3fb106SBarry Smith   if (namelist) {
263785e854fSJed Brown     ierr = PetscMalloc1(dof, namelist);CHKERRQ(ierr);
2641c3fb106SBarry Smith     if (dd->fieldname) {
2651c3fb106SBarry Smith       for (i=0; i<dof; i++) {
2661c3fb106SBarry Smith         ierr = PetscStrallocpy(dd->fieldname[i],&(*namelist)[i]);CHKERRQ(ierr);
2671c3fb106SBarry Smith       }
2681c3fb106SBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Currently DMDA must have fieldnames");
2691c3fb106SBarry Smith   }
2701c3fb106SBarry Smith   if (dmlist) {
2711c3fb106SBarry Smith     DM da;
2721c3fb106SBarry Smith 
273ce94432eSBarry Smith     ierr = DMDACreate(PetscObjectComm((PetscObject)dm), &da);CHKERRQ(ierr);
2741cced630SBarry Smith     ierr = DMSetDimension(da, dm->dim);CHKERRQ(ierr);
2751c3fb106SBarry Smith     ierr = DMDASetSizes(da, dd->M, dd->N, dd->P);CHKERRQ(ierr);
2761c3fb106SBarry Smith     ierr = DMDASetNumProcs(da, dd->m, dd->n, dd->p);CHKERRQ(ierr);
2771c3fb106SBarry Smith     ierr = DMDASetBoundaryType(da, dd->bx, dd->by, dd->bz);CHKERRQ(ierr);
2781c3fb106SBarry Smith     ierr = DMDASetDof(da, 1);CHKERRQ(ierr);
2791c3fb106SBarry Smith     ierr = DMDASetStencilType(da, dd->stencil_type);CHKERRQ(ierr);
2801c3fb106SBarry Smith     ierr = DMDASetStencilWidth(da, dd->s);CHKERRQ(ierr);
2811c3fb106SBarry Smith     ierr = DMSetUp(da);CHKERRQ(ierr);
282785e854fSJed Brown     ierr = PetscMalloc1(dof,dmlist);CHKERRQ(ierr);
283c893992eSBarry Smith     for (i=0; i<dof-1; i++) {ierr = PetscObjectReference((PetscObject)da);CHKERRQ(ierr);}
2841c3fb106SBarry Smith     for (i=0; i<dof; i++) (*dmlist)[i] = da;
2851c3fb106SBarry Smith   }
2861c3fb106SBarry Smith   PetscFunctionReturn(0);
2871c3fb106SBarry Smith }
2881c3fb106SBarry Smith 
28938221697SMatthew G. Knepley #undef __FUNCT__
29038221697SMatthew G. Knepley #define __FUNCT__ "DMClone_DA"
29138221697SMatthew G. Knepley PetscErrorCode DMClone_DA(DM dm, DM *newdm)
29238221697SMatthew G. Knepley {
29338221697SMatthew G. Knepley   DM_DA         *da = (DM_DA *) dm->data;
29438221697SMatthew G. Knepley   PetscErrorCode ierr;
29538221697SMatthew G. Knepley 
29638221697SMatthew G. Knepley   PetscFunctionBegin;
2974271099bSMatthew G. Knepley   ierr = DMSetType(*newdm, DMDA);CHKERRQ(ierr);
298c73cfb54SMatthew G. Knepley   ierr = DMSetDimension(*newdm, dm->dim);CHKERRQ(ierr);
2994271099bSMatthew G. Knepley   ierr = DMDASetSizes(*newdm, da->M, da->N, da->P);CHKERRQ(ierr);
3004271099bSMatthew G. Knepley   ierr = DMDASetNumProcs(*newdm, da->m, da->n, da->p);CHKERRQ(ierr);
3014271099bSMatthew G. Knepley   ierr = DMDASetBoundaryType(*newdm, da->bx, da->by, da->bz);CHKERRQ(ierr);
3024271099bSMatthew G. Knepley   ierr = DMDASetDof(*newdm, da->w);CHKERRQ(ierr);
3034271099bSMatthew G. Knepley   ierr = DMDASetStencilType(*newdm, da->stencil_type);CHKERRQ(ierr);
3044271099bSMatthew G. Knepley   ierr = DMDASetStencilWidth(*newdm, da->s);CHKERRQ(ierr);
3054271099bSMatthew G. Knepley   ierr = DMDASetOwnershipRanges(*newdm, da->lx, da->ly, da->lz);CHKERRQ(ierr);
306a9811db3SMatthew G. Knepley   ierr = DMSetUp(*newdm);CHKERRQ(ierr);
30738221697SMatthew G. Knepley   PetscFunctionReturn(0);
30838221697SMatthew G. Knepley }
30938221697SMatthew G. Knepley 
310793f3fe5SMatthew G. Knepley #undef __FUNCT__
311793f3fe5SMatthew G. Knepley #define __FUNCT__ "DMGetDimPoints_DA"
312793f3fe5SMatthew G. Knepley static PetscErrorCode DMGetDimPoints_DA(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
313793f3fe5SMatthew G. Knepley {
314793f3fe5SMatthew G. Knepley   PetscErrorCode ierr;
315793f3fe5SMatthew G. Knepley 
316793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
317793f3fe5SMatthew G. Knepley   ierr = DMDAGetDepthStratum(dm, dim, pStart, pEnd);CHKERRQ(ierr);
318793f3fe5SMatthew G. Knepley   PetscFunctionReturn(0);
319793f3fe5SMatthew G. Knepley }
320793f3fe5SMatthew G. Knepley 
3213efe6655SBarry Smith /*MC
3223efe6655SBarry Smith    DMDA = "da" - A DM object that is used to manage data for a structured grid in 1, 2, or 3 dimensions.
3233efe6655SBarry Smith          In the global representation of the vector each process stores a non-overlapping rectangular (or slab in 3d) portion of the grid points.
3243efe6655SBarry Smith          In the local representation these rectangular regions (slabs) are extended in all directions by a stencil width.
3253efe6655SBarry Smith 
3263efe6655SBarry Smith          The vectors can be thought of as either cell centered or vertex centered on the mesh. But some variables cannot be cell centered and others
3273efe6655SBarry Smith          vertex centered.
3283efe6655SBarry Smith 
3293efe6655SBarry Smith   Level: intermediate
3303efe6655SBarry Smith 
3313efe6655SBarry Smith .seealso: DMType, DMCOMPOSITE, DMDACreate(), DMCreate(), DMSetType()
3323efe6655SBarry Smith M*/
3333efe6655SBarry Smith 
334c970b36aSToby Isaac PETSC_EXTERN PetscErrorCode DMProjectFunctionLocal_DA(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, InsertMode, Vec);
335c970b36aSToby Isaac PETSC_EXTERN PetscErrorCode DMComputeL2Diff_DA(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *);
336*b698f381SToby Isaac PETSC_EXTERN PetscErrorCode DMComputeL2GradientDiff_DA(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], const PetscReal [],PetscInt, PetscScalar *, void *), void **, Vec,const PetscReal [], PetscReal *);
337c970b36aSToby Isaac 
3381c3fb106SBarry Smith 
33947c6ae99SBarry Smith #undef __FUNCT__
340a4121054SBarry Smith #define __FUNCT__ "DMCreate_DA"
3418cc058d9SJed Brown PETSC_EXTERN PetscErrorCode DMCreate_DA(DM da)
34247c6ae99SBarry Smith {
34347c6ae99SBarry Smith   PetscErrorCode ierr;
34447c6ae99SBarry Smith   DM_DA          *dd;
34547c6ae99SBarry Smith 
34647c6ae99SBarry Smith   PetscFunctionBegin;
347a4121054SBarry Smith   PetscValidPointer(da,1);
348b00a9115SJed Brown   ierr     = PetscNewLog(da,&dd);CHKERRQ(ierr);
349a4121054SBarry Smith   da->data = dd;
35047c6ae99SBarry Smith 
351c73cfb54SMatthew G. Knepley   da->dim        = -1;
352aa219208SBarry Smith   dd->interptype = DMDA_Q1;
35347c6ae99SBarry Smith   dd->refine_x   = 2;
35447c6ae99SBarry Smith   dd->refine_y   = 2;
35547c6ae99SBarry Smith   dd->refine_z   = 2;
35681c108dcSJed Brown   dd->coarsen_x  = 2;
35781c108dcSJed Brown   dd->coarsen_y  = 2;
35881c108dcSJed Brown   dd->coarsen_z  = 2;
3590298fd71SBarry Smith   dd->fieldname  = NULL;
36047c6ae99SBarry Smith   dd->nlocal     = -1;
36147c6ae99SBarry Smith   dd->Nlocal     = -1;
36247c6ae99SBarry Smith   dd->M          = -1;
36347c6ae99SBarry Smith   dd->N          = -1;
36447c6ae99SBarry Smith   dd->P          = -1;
36547c6ae99SBarry Smith   dd->m          = -1;
36647c6ae99SBarry Smith   dd->n          = -1;
36747c6ae99SBarry Smith   dd->p          = -1;
36847c6ae99SBarry Smith   dd->w          = -1;
36947c6ae99SBarry Smith   dd->s          = -1;
3708865f1eaSKarl Rupp 
37147c6ae99SBarry Smith   dd->xs = -1; dd->xe = -1; dd->ys = -1; dd->ye = -1; dd->zs = -1; dd->ze = -1;
37247c6ae99SBarry Smith   dd->Xs = -1; dd->Xe = -1; dd->Ys = -1; dd->Ye = -1; dd->Zs = -1; dd->Ze = -1;
37347c6ae99SBarry Smith 
3743e7870d2SPeter Brune   dd->Nsub            = 1;
3757ddda789SPeter Brune   dd->xol             = 0;
3767ddda789SPeter Brune   dd->yol             = 0;
3777ddda789SPeter Brune   dd->zol             = 0;
378d886c4f4SPeter Brune   dd->xo              = 0;
379d886c4f4SPeter Brune   dd->yo              = 0;
380d886c4f4SPeter Brune   dd->zo              = 0;
381e30e807fSPeter Brune   dd->Mo              = -1;
382e30e807fSPeter Brune   dd->No              = -1;
383e30e807fSPeter Brune   dd->Po              = -1;
38488661749SPeter Brune 
3850298fd71SBarry Smith   dd->gtol         = NULL;
3860298fd71SBarry Smith   dd->ltol         = NULL;
3870298fd71SBarry Smith   dd->ao           = NULL;
3889db3d8bcSStefano Zampini   PetscStrallocpy(AOBASIC,(char**)&dd->aotype);
38947c6ae99SBarry Smith   dd->base         = -1;
390bff4a2f0SMatthew G. Knepley   dd->bx           = DM_BOUNDARY_NONE;
391bff4a2f0SMatthew G. Knepley   dd->by           = DM_BOUNDARY_NONE;
392bff4a2f0SMatthew G. Knepley   dd->bz           = DM_BOUNDARY_NONE;
393aa219208SBarry Smith   dd->stencil_type = DMDA_STENCIL_BOX;
394aa219208SBarry Smith   dd->interptype   = DMDA_Q1;
3950298fd71SBarry Smith   dd->lx           = NULL;
3960298fd71SBarry Smith   dd->ly           = NULL;
3970298fd71SBarry Smith   dd->lz           = NULL;
39847c6ae99SBarry Smith 
399454e267fSLisandro Dalcin   dd->elementtype = DMDA_ELEMENT_Q1;
400454e267fSLisandro Dalcin 
401a4121054SBarry Smith   da->ops->globaltolocalbegin          = DMGlobalToLocalBegin_DA;
402a4121054SBarry Smith   da->ops->globaltolocalend            = DMGlobalToLocalEnd_DA;
403a4121054SBarry Smith   da->ops->localtoglobalbegin          = DMLocalToGlobalBegin_DA;
404a4121054SBarry Smith   da->ops->localtoglobalend            = DMLocalToGlobalEnd_DA;
405d78e899eSRichard Tran Mills   da->ops->localtolocalbegin           = DMLocalToLocalBegin_DA;
406d78e899eSRichard Tran Mills   da->ops->localtolocalend             = DMLocalToLocalEnd_DA;
407a4121054SBarry Smith   da->ops->createglobalvector          = DMCreateGlobalVector_DA;
408a4121054SBarry Smith   da->ops->createlocalvector           = DMCreateLocalVector_DA;
40925296bd5SBarry Smith   da->ops->createinterpolation         = DMCreateInterpolation_DA;
410e727c939SJed Brown   da->ops->getcoloring                 = DMCreateColoring_DA;
41125296bd5SBarry Smith   da->ops->creatematrix                = DMCreateMatrix_DA;
412a4121054SBarry Smith   da->ops->refine                      = DMRefine_DA;
413a4121054SBarry Smith   da->ops->coarsen                     = DMCoarsen_DA;
414a4121054SBarry Smith   da->ops->refinehierarchy             = DMRefineHierarchy_DA;
415a4121054SBarry Smith   da->ops->coarsenhierarchy            = DMCoarsenHierarchy_DA;
416e727c939SJed Brown   da->ops->getinjection                = DMCreateInjection_DA;
417e727c939SJed Brown   da->ops->getaggregates               = DMCreateAggregates_DA;
418a4121054SBarry Smith   da->ops->destroy                     = DMDestroy_DA;
419a4121054SBarry Smith   da->ops->view                        = 0;
420a4121054SBarry Smith   da->ops->setfromoptions              = DMSetFromOptions_DA;
421a4121054SBarry Smith   da->ops->setup                       = DMSetUp_DA;
42238221697SMatthew G. Knepley   da->ops->clone                       = DMClone_DA;
423b859378eSBarry Smith   da->ops->load                        = DMLoad_DA;
4246636e97aSMatthew G Knepley   da->ops->createcoordinatedm          = DMCreateCoordinateDM_DA;
425d724dfffSBarry Smith   da->ops->createsubdm                 = DMCreateSubDM_DA;
42616621825SDmitry Karpeev   da->ops->createfielddecomposition    = DMCreateFieldDecomposition_DA;
427e30e807fSPeter Brune   da->ops->createdomaindecomposition   = DMCreateDomainDecomposition_DA;
428e30e807fSPeter Brune   da->ops->createddscatters            = DMCreateDomainDecompositionScatters_DA;
429793f3fe5SMatthew G. Knepley   da->ops->getdimpoints                = DMGetDimPoints_DA;
430c970b36aSToby Isaac   da->ops->projectfunctionlocal        = DMProjectFunctionLocal_DA;
431c970b36aSToby Isaac   da->ops->computel2diff               = DMComputeL2Diff_DA;
432*b698f381SToby Isaac   da->ops->computel2gradientdiff       = DMComputeL2GradientDiff_DA;
433a4121054SBarry Smith   PetscFunctionReturn(0);
434a4121054SBarry Smith }
43547c6ae99SBarry Smith 
436a4121054SBarry Smith #undef __FUNCT__
437a4121054SBarry Smith #define __FUNCT__ "DMDACreate"
438a4121054SBarry Smith /*@
439a4121054SBarry Smith   DMDACreate - Creates a DMDA object.
440a4121054SBarry Smith 
441a4121054SBarry Smith   Collective on MPI_Comm
442a4121054SBarry Smith 
443a4121054SBarry Smith   Input Parameter:
444a4121054SBarry Smith . comm - The communicator for the DMDA object
445a4121054SBarry Smith 
446a4121054SBarry Smith   Output Parameter:
447a4121054SBarry Smith . da  - The DMDA object
448a4121054SBarry Smith 
449e0f5d30fSBarry Smith   Level: advanced
450e0f5d30fSBarry Smith 
451e0f5d30fSBarry Smith   Developers Note: Since there exists DMDACreate1/2/3d() should this routine even exist?
452a4121054SBarry Smith 
453a4121054SBarry Smith .keywords: DMDA, create
454e0f5d30fSBarry Smith .seealso:  DMDASetSizes(), DMDADuplicate(),  DMDACreate1d(), DMDACreate2d(), DMDACreate3d()
455a4121054SBarry Smith @*/
4567087cfbeSBarry Smith PetscErrorCode  DMDACreate(MPI_Comm comm, DM *da)
457a4121054SBarry Smith {
458a4121054SBarry Smith   PetscErrorCode ierr;
459a4121054SBarry Smith 
460a4121054SBarry Smith   PetscFunctionBegin;
461a4121054SBarry Smith   PetscValidPointer(da,2);
462a4121054SBarry Smith   ierr = DMCreate(comm,da);CHKERRQ(ierr);
463a4121054SBarry Smith   ierr = DMSetType(*da,DMDA);CHKERRQ(ierr);
46447c6ae99SBarry Smith   PetscFunctionReturn(0);
46547c6ae99SBarry Smith }
466b859378eSBarry Smith 
467b859378eSBarry Smith 
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