17d0a6c19SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I "petscdmda.h" I*/ 347c6ae99SBarry Smith 44416b707SBarry Smith PetscErrorCode DMSetFromOptions_DA(PetscOptionItems *PetscOptionsObject,DM da) 547c6ae99SBarry Smith { 647c6ae99SBarry Smith PetscErrorCode ierr; 747c6ae99SBarry Smith DM_DA *dd = (DM_DA*)da->data; 8c73cfb54SMatthew G. Knepley PetscInt refine = 0,dim = da->dim,maxnlevels = 100,refx[100],refy[100],refz[100],n,i; 9897f7067SBarry Smith PetscBool flg; 1047c6ae99SBarry Smith 1147c6ae99SBarry Smith PetscFunctionBegin; 1247c6ae99SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 1347c6ae99SBarry Smith 14897f7067SBarry Smith if (dd->M < 0) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_ARG_OUTOFRANGE,"Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime"); 15897f7067SBarry Smith if (dd->N < 0) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_ARG_OUTOFRANGE,"Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime"); 16897f7067SBarry Smith if (dd->P < 0) SETERRQ(PetscObjectComm((PetscObject)da),PETSC_ERR_ARG_OUTOFRANGE,"Dimension must be non-negative, call DMSetFromOptions() if you want to change the value at runtime"); 17235683edSBarry Smith 18e55864a3SBarry Smith ierr = PetscOptionsHead(PetscOptionsObject,"DMDA Options");CHKERRQ(ierr); 195a856986SBarry Smith ierr = PetscOptionsBoundedInt("-da_grid_x","Number of grid points in x direction","DMDASetSizes",dd->M,&dd->M,NULL,1);CHKERRQ(ierr); 205a856986SBarry Smith ierr = PetscOptionsBoundedInt("-da_grid_y","Number of grid points in y direction","DMDASetSizes",dd->N,&dd->N,NULL,1);CHKERRQ(ierr); 215a856986SBarry Smith ierr = PetscOptionsBoundedInt("-da_grid_z","Number of grid points in z direction","DMDASetSizes",dd->P,&dd->P,NULL,1);CHKERRQ(ierr); 227ddda789SPeter Brune 235a856986SBarry Smith ierr = PetscOptionsBoundedInt("-da_overlap","Decomposition overlap in all directions","DMDASetOverlap",dd->xol,&dd->xol,&flg,0);CHKERRQ(ierr); 247ddda789SPeter Brune if (flg) {ierr = DMDASetOverlap(da,dd->xol,dd->xol,dd->xol);CHKERRQ(ierr);} 255a856986SBarry Smith ierr = PetscOptionsBoundedInt("-da_overlap_x","Decomposition overlap in x direction","DMDASetOverlap",dd->xol,&dd->xol,NULL,0);CHKERRQ(ierr); 265a856986SBarry Smith if (dim > 1) {ierr = PetscOptionsBoundedInt("-da_overlap_y","Decomposition overlap in y direction","DMDASetOverlap",dd->yol,&dd->yol,NULL,0);CHKERRQ(ierr);} 275a856986SBarry Smith if (dim > 2) {ierr = PetscOptionsBoundedInt("-da_overlap_z","Decomposition overlap in z direction","DMDASetOverlap",dd->zol,&dd->zol,NULL,0);CHKERRQ(ierr);} 283e7870d2SPeter Brune 295a856986SBarry Smith ierr = PetscOptionsBoundedInt("-da_local_subdomains","","DMDASetNumLocalSubdomains",dd->Nsub,&dd->Nsub,&flg,PETSC_DECIDE);CHKERRQ(ierr); 303e7870d2SPeter Brune if (flg) {ierr = DMDASetNumLocalSubDomains(da,dd->Nsub);CHKERRQ(ierr);} 313e7870d2SPeter Brune 328d07fd27SPatrick Sanan /* Handle DMDA parallel distribution */ 335a856986SBarry Smith ierr = PetscOptionsBoundedInt("-da_processors_x","Number of processors in x direction","DMDASetNumProcs",dd->m,&dd->m,NULL,PETSC_DECIDE);CHKERRQ(ierr); 345a856986SBarry Smith if (dim > 1) {ierr = PetscOptionsBoundedInt("-da_processors_y","Number of processors in y direction","DMDASetNumProcs",dd->n,&dd->n,NULL,PETSC_DECIDE);CHKERRQ(ierr);} 355a856986SBarry Smith if (dim > 2) {ierr = PetscOptionsBoundedInt("-da_processors_z","Number of processors in z direction","DMDASetNumProcs",dd->p,&dd->p,NULL,PETSC_DECIDE);CHKERRQ(ierr);} 36aa219208SBarry Smith /* Handle DMDA refinement */ 375a856986SBarry Smith ierr = PetscOptionsBoundedInt("-da_refine_x","Refinement ratio in x direction","DMDASetRefinementFactor",dd->refine_x,&dd->refine_x,NULL,1);CHKERRQ(ierr); 385a856986SBarry Smith if (dim > 1) {ierr = PetscOptionsBoundedInt("-da_refine_y","Refinement ratio in y direction","DMDASetRefinementFactor",dd->refine_y,&dd->refine_y,NULL,1);CHKERRQ(ierr);} 395a856986SBarry Smith if (dim > 2) {ierr = PetscOptionsBoundedInt("-da_refine_z","Refinement ratio in z direction","DMDASetRefinementFactor",dd->refine_z,&dd->refine_z,NULL,1);CHKERRQ(ierr);} 4038fb6c91SJed Brown dd->coarsen_x = dd->refine_x; dd->coarsen_y = dd->refine_y; dd->coarsen_z = dd->refine_z; 4147c6ae99SBarry Smith 42397b6216SJed Brown /* Get refinement factors, defaults taken from the coarse DMDA */ 43397b6216SJed Brown ierr = DMDAGetRefinementFactor(da,&refx[0],&refy[0],&refz[0]);CHKERRQ(ierr); 44397b6216SJed Brown for (i=1; i<maxnlevels; i++) { 45397b6216SJed Brown refx[i] = refx[0]; 46397b6216SJed Brown refy[i] = refy[0]; 47397b6216SJed Brown refz[i] = refz[0]; 48397b6216SJed Brown } 49397b6216SJed Brown n = maxnlevels; 50897f7067SBarry Smith ierr = PetscOptionsIntArray("-da_refine_hierarchy_x","Refinement factor for each level","None",refx,&n,&flg);CHKERRQ(ierr); 51897f7067SBarry Smith if (flg) { 52897f7067SBarry Smith dd->refine_x = refx[0]; 53897f7067SBarry Smith dd->refine_x_hier_n = n; 54897f7067SBarry Smith ierr = PetscMalloc1(n,&dd->refine_x_hier);CHKERRQ(ierr); 55580bdb30SBarry Smith ierr = PetscArraycpy(dd->refine_x_hier,refx,n);CHKERRQ(ierr); 56897f7067SBarry Smith } 57c73cfb54SMatthew G. Knepley if (dim > 1) { 58397b6216SJed Brown n = maxnlevels; 59897f7067SBarry Smith ierr = PetscOptionsIntArray("-da_refine_hierarchy_y","Refinement factor for each level","None",refy,&n,&flg);CHKERRQ(ierr); 60897f7067SBarry Smith if (flg) { 61897f7067SBarry Smith dd->refine_y = refy[0]; 62897f7067SBarry Smith dd->refine_y_hier_n = n; 63897f7067SBarry Smith ierr = PetscMalloc1(n,&dd->refine_y_hier);CHKERRQ(ierr); 64580bdb30SBarry Smith ierr = PetscArraycpy(dd->refine_y_hier,refy,n);CHKERRQ(ierr); 65897f7067SBarry Smith } 66397b6216SJed Brown } 67c73cfb54SMatthew G. Knepley if (dim > 2) { 68397b6216SJed Brown n = maxnlevels; 69897f7067SBarry Smith ierr = PetscOptionsIntArray("-da_refine_hierarchy_z","Refinement factor for each level","None",refz,&n,&flg);CHKERRQ(ierr); 70897f7067SBarry Smith if (flg) { 71897f7067SBarry Smith dd->refine_z = refz[0]; 72897f7067SBarry Smith dd->refine_z_hier_n = n; 73897f7067SBarry Smith ierr = PetscMalloc1(n,&dd->refine_z_hier);CHKERRQ(ierr); 74580bdb30SBarry Smith ierr = PetscArraycpy(dd->refine_z_hier,refz,n);CHKERRQ(ierr); 75897f7067SBarry Smith } 76397b6216SJed Brown } 77397b6216SJed Brown 785a856986SBarry Smith ierr = PetscOptionsBoundedInt("-da_refine","Uniformly refine DA one or more times","None",refine,&refine,NULL,0);CHKERRQ(ierr); 79f9ba7244SBarry Smith ierr = PetscOptionsTail();CHKERRQ(ierr); 80235683edSBarry Smith 81e0f5d30fSBarry Smith while (refine--) { 82bff4a2f0SMatthew G. Knepley if (dd->bx == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) { 83e0f5d30fSBarry Smith dd->M = dd->refine_x*dd->M; 84e0f5d30fSBarry Smith } else { 85e0f5d30fSBarry Smith dd->M = 1 + dd->refine_x*(dd->M - 1); 86e0f5d30fSBarry Smith } 87bff4a2f0SMatthew G. Knepley if (dd->by == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) { 88e0f5d30fSBarry Smith dd->N = dd->refine_y*dd->N; 89e0f5d30fSBarry Smith } else { 90e0f5d30fSBarry Smith dd->N = 1 + dd->refine_y*(dd->N - 1); 91e0f5d30fSBarry Smith } 92bff4a2f0SMatthew G. Knepley if (dd->bz == DM_BOUNDARY_PERIODIC || dd->interptype == DMDA_Q0) { 93e0f5d30fSBarry Smith dd->P = dd->refine_z*dd->P; 94e0f5d30fSBarry Smith } else { 95e0f5d30fSBarry Smith dd->P = 1 + dd->refine_z*(dd->P - 1); 96e0f5d30fSBarry Smith } 97e0f5d30fSBarry Smith da->levelup++; 9885fc4b34SJed Brown if (da->levelup - da->leveldown >= 0) { 9985fc4b34SJed Brown dd->refine_x = refx[da->levelup - da->leveldown]; 10085fc4b34SJed Brown dd->refine_y = refy[da->levelup - da->leveldown]; 10185fc4b34SJed Brown dd->refine_z = refz[da->levelup - da->leveldown]; 10285fc4b34SJed Brown } 10385fc4b34SJed Brown if (da->levelup - da->leveldown >= 1) { 10485fc4b34SJed Brown dd->coarsen_x = refx[da->levelup - da->leveldown - 1]; 10585fc4b34SJed Brown dd->coarsen_y = refy[da->levelup - da->leveldown - 1]; 10685fc4b34SJed Brown dd->coarsen_z = refz[da->levelup - da->leveldown - 1]; 10785fc4b34SJed Brown } 108e0f5d30fSBarry Smith } 10947c6ae99SBarry Smith PetscFunctionReturn(0); 11047c6ae99SBarry Smith } 11147c6ae99SBarry Smith 1127087cfbeSBarry Smith extern PetscErrorCode DMCreateGlobalVector_DA(DM,Vec*); 1137087cfbeSBarry Smith extern PetscErrorCode DMCreateLocalVector_DA(DM,Vec*); 1147087cfbeSBarry Smith extern PetscErrorCode DMGlobalToLocalBegin_DA(DM,Vec,InsertMode,Vec); 1157087cfbeSBarry Smith extern PetscErrorCode DMGlobalToLocalEnd_DA(DM,Vec,InsertMode,Vec); 1167087cfbeSBarry Smith extern PetscErrorCode DMLocalToGlobalBegin_DA(DM,Vec,InsertMode,Vec); 1177087cfbeSBarry Smith extern PetscErrorCode DMLocalToGlobalEnd_DA(DM,Vec,InsertMode,Vec); 118d78e899eSRichard Tran Mills extern PetscErrorCode DMLocalToLocalBegin_DA(DM,Vec,InsertMode,Vec); 119d78e899eSRichard Tran Mills extern PetscErrorCode DMLocalToLocalEnd_DA(DM,Vec,InsertMode,Vec); 120e727c939SJed Brown extern PetscErrorCode DMCreateInterpolation_DA(DM,DM,Mat*,Vec*); 121b412c318SBarry Smith extern PetscErrorCode DMCreateColoring_DA(DM,ISColoringType,ISColoring*); 122b412c318SBarry Smith extern PetscErrorCode DMCreateMatrix_DA(DM,Mat*); 1236636e97aSMatthew G Knepley extern PetscErrorCode DMCreateCoordinateDM_DA(DM,DM*); 1247087cfbeSBarry Smith extern PetscErrorCode DMRefine_DA(DM,MPI_Comm,DM*); 1257087cfbeSBarry Smith extern PetscErrorCode DMCoarsen_DA(DM,MPI_Comm,DM*); 1267087cfbeSBarry Smith extern PetscErrorCode DMRefineHierarchy_DA(DM,PetscInt,DM[]); 1277087cfbeSBarry Smith extern PetscErrorCode DMCoarsenHierarchy_DA(DM,PetscInt,DM[]); 1286dbf9973SLawrence Mitchell extern PetscErrorCode DMCreateInjection_DA(DM,DM,Mat*); 1297087cfbeSBarry Smith extern PetscErrorCode DMView_DA(DM,PetscViewer); 1307087cfbeSBarry Smith extern PetscErrorCode DMSetUp_DA(DM); 1317087cfbeSBarry Smith extern PetscErrorCode DMDestroy_DA(DM); 132e30e807fSPeter Brune extern PetscErrorCode DMCreateDomainDecomposition_DA(DM,PetscInt*,char***,IS**,IS**,DM**); 133e30e807fSPeter Brune extern PetscErrorCode DMCreateDomainDecompositionScatters_DA(DM,PetscInt,DM*,VecScatter**,VecScatter**,VecScatter**); 1347c3cd84eSPatrick Sanan PETSC_INTERN PetscErrorCode DMGetCompatibility_DA(DM,DM,PetscBool*,PetscBool*); 1359a42bb27SBarry Smith 136b859378eSBarry Smith PetscErrorCode DMLoad_DA(DM da,PetscViewer viewer) 137b859378eSBarry Smith { 138b859378eSBarry Smith PetscErrorCode ierr; 139060da220SMatthew G. Knepley PetscInt dim,m,n,p,dof,swidth; 140b859378eSBarry Smith DMDAStencilType stencil; 141bff4a2f0SMatthew G. Knepley DMBoundaryType bx,by,bz; 142bc2bf880SBarry Smith PetscBool coors; 143bc2bf880SBarry Smith DM dac; 144bc2bf880SBarry Smith Vec c; 145b859378eSBarry Smith 146b859378eSBarry Smith PetscFunctionBegin; 147060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&dim,1,NULL,PETSC_INT);CHKERRQ(ierr); 148060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&m,1,NULL,PETSC_INT);CHKERRQ(ierr); 149060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&n,1,NULL,PETSC_INT);CHKERRQ(ierr); 150060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&p,1,NULL,PETSC_INT);CHKERRQ(ierr); 151060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&dof,1,NULL,PETSC_INT);CHKERRQ(ierr); 152060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&swidth,1,NULL,PETSC_INT);CHKERRQ(ierr); 153060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&bx,1,NULL,PETSC_ENUM);CHKERRQ(ierr); 154060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&by,1,NULL,PETSC_ENUM);CHKERRQ(ierr); 155060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&bz,1,NULL,PETSC_ENUM);CHKERRQ(ierr); 156060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&stencil,1,NULL,PETSC_ENUM);CHKERRQ(ierr); 157b859378eSBarry Smith 158c73cfb54SMatthew G. Knepley ierr = DMSetDimension(da, dim);CHKERRQ(ierr); 159bc2bf880SBarry Smith ierr = DMDASetSizes(da, m,n,p);CHKERRQ(ierr); 160b859378eSBarry Smith ierr = DMDASetBoundaryType(da, bx, by, bz);CHKERRQ(ierr); 161b859378eSBarry Smith ierr = DMDASetDof(da, dof);CHKERRQ(ierr); 162b859378eSBarry Smith ierr = DMDASetStencilType(da, stencil);CHKERRQ(ierr); 163b859378eSBarry Smith ierr = DMDASetStencilWidth(da, swidth);CHKERRQ(ierr); 164b859378eSBarry Smith ierr = DMSetUp(da);CHKERRQ(ierr); 165060da220SMatthew G. Knepley ierr = PetscViewerBinaryRead(viewer,&coors,1,NULL,PETSC_ENUM);CHKERRQ(ierr); 166bc2bf880SBarry Smith if (coors) { 1676636e97aSMatthew G Knepley ierr = DMGetCoordinateDM(da,&dac);CHKERRQ(ierr); 168bc2bf880SBarry Smith ierr = DMCreateGlobalVector(dac,&c);CHKERRQ(ierr); 169bc2bf880SBarry Smith ierr = VecLoad(c,viewer);CHKERRQ(ierr); 1706636e97aSMatthew G Knepley ierr = DMSetCoordinates(da,c);CHKERRQ(ierr); 171bc2bf880SBarry Smith ierr = VecDestroy(&c);CHKERRQ(ierr); 172bc2bf880SBarry Smith } 173b859378eSBarry Smith PetscFunctionReturn(0); 174b859378eSBarry Smith } 175b859378eSBarry Smith 176276c5506SMatthew G. Knepley PetscErrorCode DMCreateSubDM_DA(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 177d724dfffSBarry Smith { 178d724dfffSBarry Smith DM_DA *da = (DM_DA*) dm->data; 1794d9407bcSMatthew G. Knepley PetscErrorCode ierr; 180d724dfffSBarry Smith 181d724dfffSBarry Smith PetscFunctionBegin; 182d724dfffSBarry Smith if (subdm) { 183c38c1269SMatthew G. Knepley PetscSF sf; 184c38c1269SMatthew G. Knepley Vec coords; 185c38c1269SMatthew G. Knepley void *ctx; 186c38c1269SMatthew G. Knepley /* Cannot use DMClone since the dof stuff is mixed in. Ugh 187c38c1269SMatthew G. Knepley ierr = DMClone(dm, subdm);CHKERRQ(ierr); */ 188c38c1269SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), subdm);CHKERRQ(ierr); 189c38c1269SMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 190c38c1269SMatthew G. Knepley ierr = DMSetPointSF(*subdm, sf);CHKERRQ(ierr); 191c38c1269SMatthew G. Knepley ierr = DMGetApplicationContext(dm, &ctx);CHKERRQ(ierr); 192c38c1269SMatthew G. Knepley ierr = DMSetApplicationContext(*subdm, ctx);CHKERRQ(ierr); 193c38c1269SMatthew G. Knepley ierr = DMGetCoordinatesLocal(dm, &coords);CHKERRQ(ierr); 194c38c1269SMatthew G. Knepley if (coords) { 195c38c1269SMatthew G. Knepley ierr = DMSetCoordinatesLocal(*subdm, coords);CHKERRQ(ierr); 196c38c1269SMatthew G. Knepley } else { 197c38c1269SMatthew G. Knepley ierr = DMGetCoordinates(dm, &coords);CHKERRQ(ierr); 198c38c1269SMatthew G. Knepley if (coords) {ierr = DMSetCoordinates(*subdm, coords);CHKERRQ(ierr);} 199c38c1269SMatthew G. Knepley } 200c38c1269SMatthew G. Knepley 201c38c1269SMatthew G. Knepley ierr = DMSetType(*subdm, DMDA);CHKERRQ(ierr); 202c73cfb54SMatthew G. Knepley ierr = DMSetDimension(*subdm, dm->dim);CHKERRQ(ierr); 203c38c1269SMatthew G. Knepley ierr = DMDASetSizes(*subdm, da->M, da->N, da->P);CHKERRQ(ierr); 204c38c1269SMatthew G. Knepley ierr = DMDASetNumProcs(*subdm, da->m, da->n, da->p);CHKERRQ(ierr); 205c38c1269SMatthew G. Knepley ierr = DMDASetBoundaryType(*subdm, da->bx, da->by, da->bz);CHKERRQ(ierr); 20638221697SMatthew G. Knepley ierr = DMDASetDof(*subdm, numFields);CHKERRQ(ierr); 207c38c1269SMatthew G. Knepley ierr = DMDASetStencilType(*subdm, da->stencil_type);CHKERRQ(ierr); 208c38c1269SMatthew G. Knepley ierr = DMDASetStencilWidth(*subdm, da->s);CHKERRQ(ierr); 209c38c1269SMatthew G. Knepley ierr = DMDASetOwnershipRanges(*subdm, da->lx, da->ly, da->lz);CHKERRQ(ierr); 210d724dfffSBarry Smith } 211d724dfffSBarry Smith if (is) { 212d724dfffSBarry Smith PetscInt *indices, cnt = 0, dof = da->w, i, j; 21338221697SMatthew G. Knepley 214785e854fSJed Brown ierr = PetscMalloc1(da->Nlocal*numFields/dof, &indices);CHKERRQ(ierr); 21538221697SMatthew G. Knepley for (i = da->base/dof; i < (da->base+da->Nlocal)/dof; ++i) { 21638221697SMatthew G. Knepley for (j = 0; j < numFields; ++j) { 217d724dfffSBarry Smith indices[cnt++] = dof*i + fields[j]; 218d724dfffSBarry Smith } 219d724dfffSBarry Smith } 220cb004a26SBarry Smith if (cnt != da->Nlocal*numFields/dof) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Count %D does not equal expected value %D", cnt, da->Nlocal*numFields/dof); 22138221697SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) dm), cnt, indices, PETSC_OWN_POINTER, is);CHKERRQ(ierr); 222d724dfffSBarry Smith } 223d724dfffSBarry Smith PetscFunctionReturn(0); 224d724dfffSBarry Smith } 225d724dfffSBarry Smith 22616621825SDmitry Karpeev PetscErrorCode DMCreateFieldDecomposition_DA(DM dm, PetscInt *len,char ***namelist, IS **islist, DM **dmlist) 2271c3fb106SBarry Smith { 2281c3fb106SBarry Smith PetscInt i; 2291c3fb106SBarry Smith PetscErrorCode ierr; 2301c3fb106SBarry Smith DM_DA *dd = (DM_DA*)dm->data; 2311c3fb106SBarry Smith PetscInt dof = dd->w; 2321c3fb106SBarry Smith 2331c3fb106SBarry Smith PetscFunctionBegin; 234731c8d9eSDmitry Karpeev if (len) *len = dof; 2351c3fb106SBarry Smith if (islist) { 2361c3fb106SBarry Smith Vec v; 2371c3fb106SBarry Smith PetscInt rstart,n; 2381c3fb106SBarry Smith 2391c3fb106SBarry Smith ierr = DMGetGlobalVector(dm,&v);CHKERRQ(ierr); 2400298fd71SBarry Smith ierr = VecGetOwnershipRange(v,&rstart,NULL);CHKERRQ(ierr); 2411c3fb106SBarry Smith ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 2421c3fb106SBarry Smith ierr = DMRestoreGlobalVector(dm,&v);CHKERRQ(ierr); 243785e854fSJed Brown ierr = PetscMalloc1(dof,islist);CHKERRQ(ierr); 2441c3fb106SBarry Smith for (i=0; i<dof; i++) { 245ce94432eSBarry Smith ierr = ISCreateStride(PetscObjectComm((PetscObject)dm),n/dof,rstart+i,dof,&(*islist)[i]);CHKERRQ(ierr); 2461c3fb106SBarry Smith } 2471c3fb106SBarry Smith } 2481c3fb106SBarry Smith if (namelist) { 249785e854fSJed Brown ierr = PetscMalloc1(dof, namelist);CHKERRQ(ierr); 2501c3fb106SBarry Smith if (dd->fieldname) { 2511c3fb106SBarry Smith for (i=0; i<dof; i++) { 2521c3fb106SBarry Smith ierr = PetscStrallocpy(dd->fieldname[i],&(*namelist)[i]);CHKERRQ(ierr); 2531c3fb106SBarry Smith } 2541c3fb106SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Currently DMDA must have fieldnames"); 2551c3fb106SBarry Smith } 2561c3fb106SBarry Smith if (dmlist) { 2571c3fb106SBarry Smith DM da; 2581c3fb106SBarry Smith 259ce94432eSBarry Smith ierr = DMDACreate(PetscObjectComm((PetscObject)dm), &da);CHKERRQ(ierr); 2601cced630SBarry Smith ierr = DMSetDimension(da, dm->dim);CHKERRQ(ierr); 2611c3fb106SBarry Smith ierr = DMDASetSizes(da, dd->M, dd->N, dd->P);CHKERRQ(ierr); 2621c3fb106SBarry Smith ierr = DMDASetNumProcs(da, dd->m, dd->n, dd->p);CHKERRQ(ierr); 2631c3fb106SBarry Smith ierr = DMDASetBoundaryType(da, dd->bx, dd->by, dd->bz);CHKERRQ(ierr); 2641c3fb106SBarry Smith ierr = DMDASetDof(da, 1);CHKERRQ(ierr); 2651c3fb106SBarry Smith ierr = DMDASetStencilType(da, dd->stencil_type);CHKERRQ(ierr); 2661c3fb106SBarry Smith ierr = DMDASetStencilWidth(da, dd->s);CHKERRQ(ierr); 2671c3fb106SBarry Smith ierr = DMSetUp(da);CHKERRQ(ierr); 268785e854fSJed Brown ierr = PetscMalloc1(dof,dmlist);CHKERRQ(ierr); 269c893992eSBarry Smith for (i=0; i<dof-1; i++) {ierr = PetscObjectReference((PetscObject)da);CHKERRQ(ierr);} 2701c3fb106SBarry Smith for (i=0; i<dof; i++) (*dmlist)[i] = da; 2711c3fb106SBarry Smith } 2721c3fb106SBarry Smith PetscFunctionReturn(0); 2731c3fb106SBarry Smith } 2741c3fb106SBarry Smith 27538221697SMatthew G. Knepley PetscErrorCode DMClone_DA(DM dm, DM *newdm) 27638221697SMatthew G. Knepley { 27738221697SMatthew G. Knepley DM_DA *da = (DM_DA *) dm->data; 27838221697SMatthew G. Knepley PetscErrorCode ierr; 27938221697SMatthew G. Knepley 28038221697SMatthew G. Knepley PetscFunctionBegin; 2814271099bSMatthew G. Knepley ierr = DMSetType(*newdm, DMDA);CHKERRQ(ierr); 282c73cfb54SMatthew G. Knepley ierr = DMSetDimension(*newdm, dm->dim);CHKERRQ(ierr); 2834271099bSMatthew G. Knepley ierr = DMDASetSizes(*newdm, da->M, da->N, da->P);CHKERRQ(ierr); 2844271099bSMatthew G. Knepley ierr = DMDASetNumProcs(*newdm, da->m, da->n, da->p);CHKERRQ(ierr); 2854271099bSMatthew G. Knepley ierr = DMDASetBoundaryType(*newdm, da->bx, da->by, da->bz);CHKERRQ(ierr); 2864271099bSMatthew G. Knepley ierr = DMDASetDof(*newdm, da->w);CHKERRQ(ierr); 2874271099bSMatthew G. Knepley ierr = DMDASetStencilType(*newdm, da->stencil_type);CHKERRQ(ierr); 2884271099bSMatthew G. Knepley ierr = DMDASetStencilWidth(*newdm, da->s);CHKERRQ(ierr); 2894271099bSMatthew G. Knepley ierr = DMDASetOwnershipRanges(*newdm, da->lx, da->ly, da->lz);CHKERRQ(ierr); 290a9811db3SMatthew G. Knepley ierr = DMSetUp(*newdm);CHKERRQ(ierr); 29138221697SMatthew G. Knepley PetscFunctionReturn(0); 29238221697SMatthew G. Knepley } 29338221697SMatthew G. Knepley 2944a7a4c06SLawrence Mitchell static PetscErrorCode DMHasCreateInjection_DA(DM dm, PetscBool *flg) 2954a7a4c06SLawrence Mitchell { 2964a7a4c06SLawrence Mitchell DM_DA *da = (DM_DA *)dm->data; 2974a7a4c06SLawrence Mitchell 2984a7a4c06SLawrence Mitchell PetscFunctionBegin; 2994a7a4c06SLawrence Mitchell PetscValidHeaderSpecific(dm,DM_CLASSID,1); 300534a8f05SLisandro Dalcin PetscValidBoolPointer(flg,2); 301131f56ebSLawrence Mitchell *flg = da->interptype == DMDA_Q1 ? PETSC_TRUE : PETSC_FALSE; 3024a7a4c06SLawrence Mitchell PetscFunctionReturn(0); 3034a7a4c06SLawrence Mitchell } 3044a7a4c06SLawrence Mitchell 305793f3fe5SMatthew G. Knepley static PetscErrorCode DMGetDimPoints_DA(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 306793f3fe5SMatthew G. Knepley { 307793f3fe5SMatthew G. Knepley PetscErrorCode ierr; 308793f3fe5SMatthew G. Knepley 309793f3fe5SMatthew G. Knepley PetscFunctionBegin; 310793f3fe5SMatthew G. Knepley ierr = DMDAGetDepthStratum(dm, dim, pStart, pEnd);CHKERRQ(ierr); 311793f3fe5SMatthew G. Knepley PetscFunctionReturn(0); 312793f3fe5SMatthew G. Knepley } 313793f3fe5SMatthew G. Knepley 314502a2867SDave May static PetscErrorCode DMGetNeighbors_DA(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 315502a2867SDave May { 316502a2867SDave May PetscErrorCode ierr; 317502a2867SDave May PetscInt dim; 318502a2867SDave May DMDAStencilType st; 319502a2867SDave May 320502a2867SDave May PetscFunctionBegin; 321502a2867SDave May ierr = DMDAGetNeighbors(dm,ranks);CHKERRQ(ierr); 322502a2867SDave May ierr = DMDAGetInfo(dm,&dim,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,&st);CHKERRQ(ierr); 323502a2867SDave May 324502a2867SDave May switch (dim) { 325502a2867SDave May case 1: 326502a2867SDave May *nranks = 3; 327d2ebda5dSSatish Balay /* if (st == DMDA_STENCIL_STAR) { *nranks = 3; } */ 328502a2867SDave May break; 329502a2867SDave May case 2: 330502a2867SDave May *nranks = 9; 331d2ebda5dSSatish Balay /* if (st == DMDA_STENCIL_STAR) { *nranks = 5; } */ 332502a2867SDave May break; 333502a2867SDave May case 3: 334502a2867SDave May *nranks = 27; 335d2ebda5dSSatish Balay /* if (st == DMDA_STENCIL_STAR) { *nranks = 7; } */ 336502a2867SDave May break; 337502a2867SDave May default: 338502a2867SDave May break; 339502a2867SDave May } 340502a2867SDave May PetscFunctionReturn(0); 341502a2867SDave May } 342502a2867SDave May 3433efe6655SBarry Smith /*MC 3443efe6655SBarry Smith DMDA = "da" - A DM object that is used to manage data for a structured grid in 1, 2, or 3 dimensions. 3453efe6655SBarry Smith In the global representation of the vector each process stores a non-overlapping rectangular (or slab in 3d) portion of the grid points. 3463efe6655SBarry Smith In the local representation these rectangular regions (slabs) are extended in all directions by a stencil width. 3473efe6655SBarry Smith 3483efe6655SBarry Smith The vectors can be thought of as either cell centered or vertex centered on the mesh. But some variables cannot be cell centered and others 3493bd220d7SPatrick Sanan vertex centered; see the documentation for DMSTAG, a similar DM implementation which supports these staggered grids. 3503efe6655SBarry Smith 3513efe6655SBarry Smith Level: intermediate 3523efe6655SBarry Smith 3533bd220d7SPatrick Sanan .seealso: DMType, DMCOMPOSITE, DMSTAG, DMDACreate(), DMCreate(), DMSetType() 3543efe6655SBarry Smith M*/ 3553efe6655SBarry Smith 35605264a50SDave May extern PetscErrorCode DMLocatePoints_DA_Regular(DM,Vec,DMPointLocationType,PetscSF); 3578135c375SStefano Zampini PETSC_INTERN PetscErrorCode DMSetUpGLVisViewer_DMDA(PetscObject,PetscViewer); 3581c3fb106SBarry Smith 3598cc058d9SJed Brown PETSC_EXTERN PetscErrorCode DMCreate_DA(DM da) 36047c6ae99SBarry Smith { 36147c6ae99SBarry Smith PetscErrorCode ierr; 36247c6ae99SBarry Smith DM_DA *dd; 36347c6ae99SBarry Smith 36447c6ae99SBarry Smith PetscFunctionBegin; 365a4121054SBarry Smith PetscValidPointer(da,1); 366b00a9115SJed Brown ierr = PetscNewLog(da,&dd);CHKERRQ(ierr); 367a4121054SBarry Smith da->data = dd; 36847c6ae99SBarry Smith 369c73cfb54SMatthew G. Knepley da->dim = -1; 370aa219208SBarry Smith dd->interptype = DMDA_Q1; 37147c6ae99SBarry Smith dd->refine_x = 2; 37247c6ae99SBarry Smith dd->refine_y = 2; 37347c6ae99SBarry Smith dd->refine_z = 2; 37481c108dcSJed Brown dd->coarsen_x = 2; 37581c108dcSJed Brown dd->coarsen_y = 2; 37681c108dcSJed Brown dd->coarsen_z = 2; 3770298fd71SBarry Smith dd->fieldname = NULL; 37847c6ae99SBarry Smith dd->nlocal = -1; 37947c6ae99SBarry Smith dd->Nlocal = -1; 38047c6ae99SBarry Smith dd->M = -1; 38147c6ae99SBarry Smith dd->N = -1; 38247c6ae99SBarry Smith dd->P = -1; 38347c6ae99SBarry Smith dd->m = -1; 38447c6ae99SBarry Smith dd->n = -1; 38547c6ae99SBarry Smith dd->p = -1; 38647c6ae99SBarry Smith dd->w = -1; 38747c6ae99SBarry Smith dd->s = -1; 3888865f1eaSKarl Rupp 38947c6ae99SBarry Smith dd->xs = -1; dd->xe = -1; dd->ys = -1; dd->ye = -1; dd->zs = -1; dd->ze = -1; 39047c6ae99SBarry Smith dd->Xs = -1; dd->Xe = -1; dd->Ys = -1; dd->Ye = -1; dd->Zs = -1; dd->Ze = -1; 39147c6ae99SBarry Smith 3923e7870d2SPeter Brune dd->Nsub = 1; 3937ddda789SPeter Brune dd->xol = 0; 3947ddda789SPeter Brune dd->yol = 0; 3957ddda789SPeter Brune dd->zol = 0; 396d886c4f4SPeter Brune dd->xo = 0; 397d886c4f4SPeter Brune dd->yo = 0; 398d886c4f4SPeter Brune dd->zo = 0; 399e30e807fSPeter Brune dd->Mo = -1; 400e30e807fSPeter Brune dd->No = -1; 401e30e807fSPeter Brune dd->Po = -1; 40288661749SPeter Brune 4030298fd71SBarry Smith dd->gtol = NULL; 4040298fd71SBarry Smith dd->ltol = NULL; 4050298fd71SBarry Smith dd->ao = NULL; 4069db3d8bcSStefano Zampini PetscStrallocpy(AOBASIC,(char**)&dd->aotype); 40747c6ae99SBarry Smith dd->base = -1; 408bff4a2f0SMatthew G. Knepley dd->bx = DM_BOUNDARY_NONE; 409bff4a2f0SMatthew G. Knepley dd->by = DM_BOUNDARY_NONE; 410bff4a2f0SMatthew G. Knepley dd->bz = DM_BOUNDARY_NONE; 411aa219208SBarry Smith dd->stencil_type = DMDA_STENCIL_BOX; 412aa219208SBarry Smith dd->interptype = DMDA_Q1; 4130298fd71SBarry Smith dd->lx = NULL; 4140298fd71SBarry Smith dd->ly = NULL; 4150298fd71SBarry Smith dd->lz = NULL; 41647c6ae99SBarry Smith 417454e267fSLisandro Dalcin dd->elementtype = DMDA_ELEMENT_Q1; 418454e267fSLisandro Dalcin 419a4121054SBarry Smith da->ops->globaltolocalbegin = DMGlobalToLocalBegin_DA; 420a4121054SBarry Smith da->ops->globaltolocalend = DMGlobalToLocalEnd_DA; 421a4121054SBarry Smith da->ops->localtoglobalbegin = DMLocalToGlobalBegin_DA; 422a4121054SBarry Smith da->ops->localtoglobalend = DMLocalToGlobalEnd_DA; 423d78e899eSRichard Tran Mills da->ops->localtolocalbegin = DMLocalToLocalBegin_DA; 424d78e899eSRichard Tran Mills da->ops->localtolocalend = DMLocalToLocalEnd_DA; 425a4121054SBarry Smith da->ops->createglobalvector = DMCreateGlobalVector_DA; 426a4121054SBarry Smith da->ops->createlocalvector = DMCreateLocalVector_DA; 42725296bd5SBarry Smith da->ops->createinterpolation = DMCreateInterpolation_DA; 428e727c939SJed Brown da->ops->getcoloring = DMCreateColoring_DA; 42925296bd5SBarry Smith da->ops->creatematrix = DMCreateMatrix_DA; 430a4121054SBarry Smith da->ops->refine = DMRefine_DA; 431a4121054SBarry Smith da->ops->coarsen = DMCoarsen_DA; 432a4121054SBarry Smith da->ops->refinehierarchy = DMRefineHierarchy_DA; 433a4121054SBarry Smith da->ops->coarsenhierarchy = DMCoarsenHierarchy_DA; 4345a84ad33SLisandro Dalcin da->ops->createinjection = DMCreateInjection_DA; 4354a7a4c06SLawrence Mitchell da->ops->hascreateinjection = DMHasCreateInjection_DA; 436a4121054SBarry Smith da->ops->destroy = DMDestroy_DA; 437*ea78f98cSLisandro Dalcin da->ops->view = NULL; 438a4121054SBarry Smith da->ops->setfromoptions = DMSetFromOptions_DA; 439a4121054SBarry Smith da->ops->setup = DMSetUp_DA; 44038221697SMatthew G. Knepley da->ops->clone = DMClone_DA; 441b859378eSBarry Smith da->ops->load = DMLoad_DA; 4426636e97aSMatthew G Knepley da->ops->createcoordinatedm = DMCreateCoordinateDM_DA; 443d724dfffSBarry Smith da->ops->createsubdm = DMCreateSubDM_DA; 44416621825SDmitry Karpeev da->ops->createfielddecomposition = DMCreateFieldDecomposition_DA; 445e30e807fSPeter Brune da->ops->createdomaindecomposition = DMCreateDomainDecomposition_DA; 446e30e807fSPeter Brune da->ops->createddscatters = DMCreateDomainDecompositionScatters_DA; 447793f3fe5SMatthew G. Knepley da->ops->getdimpoints = DMGetDimPoints_DA; 448502a2867SDave May da->ops->getneighbors = DMGetNeighbors_DA; 44905264a50SDave May da->ops->locatepoints = DMLocatePoints_DA_Regular; 4507c3cd84eSPatrick Sanan da->ops->getcompatibility = DMGetCompatibility_DA; 4518135c375SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)da,"DMSetUpGLVisViewer_C",DMSetUpGLVisViewer_DMDA);CHKERRQ(ierr); 452a4121054SBarry Smith PetscFunctionReturn(0); 453a4121054SBarry Smith } 45447c6ae99SBarry Smith 455a4121054SBarry Smith /*@ 456a4121054SBarry Smith DMDACreate - Creates a DMDA object. 457a4121054SBarry Smith 4585edebc4bSPatrick Sanan Collective 459a4121054SBarry Smith 460a4121054SBarry Smith Input Parameter: 461a4121054SBarry Smith . comm - The communicator for the DMDA object 462a4121054SBarry Smith 463a4121054SBarry Smith Output Parameter: 464a4121054SBarry Smith . da - The DMDA object 465a4121054SBarry Smith 466e0f5d30fSBarry Smith Level: advanced 467e0f5d30fSBarry Smith 4685edebc4bSPatrick Sanan Developers Note: 4695edebc4bSPatrick Sanan Since there exists DMDACreate1/2/3d() should this routine even exist? 470a4121054SBarry Smith 4715edebc4bSPatrick Sanan .seealso: DMDASetSizes(), DMClone(), DMDACreate1d(), DMDACreate2d(), DMDACreate3d() 472a4121054SBarry Smith @*/ 4737087cfbeSBarry Smith PetscErrorCode DMDACreate(MPI_Comm comm, DM *da) 474a4121054SBarry Smith { 475a4121054SBarry Smith PetscErrorCode ierr; 476a4121054SBarry Smith 477a4121054SBarry Smith PetscFunctionBegin; 478a4121054SBarry Smith PetscValidPointer(da,2); 479a4121054SBarry Smith ierr = DMCreate(comm,da);CHKERRQ(ierr); 480a4121054SBarry Smith ierr = DMSetType(*da,DMDA);CHKERRQ(ierr); 48147c6ae99SBarry Smith PetscFunctionReturn(0); 48247c6ae99SBarry Smith } 483b859378eSBarry Smith 484b859378eSBarry Smith 485