xref: /petsc/src/dm/impls/da/gr2.c (revision 15229ffc342989b2bf0590a733d92c152a3348fc)
147c6ae99SBarry Smith /*
2aa219208SBarry Smith    Plots vectors obtained with DMDACreate2d()
347c6ae99SBarry Smith */
447c6ae99SBarry Smith 
5af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I  "petscdmda.h"   I*/
68135c375SStefano Zampini #include <petsc/private/glvisvecimpl.h>
72d95be3dSVaclav Hapla #include <petsc/private/viewerhdf5impl.h>
89804daf3SBarry Smith #include <petscdraw.h>
947c6ae99SBarry Smith 
1047c6ae99SBarry Smith /*
1147c6ae99SBarry Smith         The data that is passed into the graphics callback
1247c6ae99SBarry Smith */
1347c6ae99SBarry Smith typedef struct {
14e5ab1681SLisandro Dalcin   PetscMPIInt        rank;
15e5ab1681SLisandro Dalcin   PetscInt           m, n, dof, k;
16e5ab1681SLisandro Dalcin   PetscReal          xmin, xmax, ymin, ymax, min, max;
175edff71fSBarry Smith   const PetscScalar *xy, *v;
187fe7c8feSLisandro Dalcin   PetscBool          showaxis, showgrid;
19109c9344SBarry Smith   const char        *name0, *name1;
2047c6ae99SBarry Smith } ZoomCtx;
2147c6ae99SBarry Smith 
2247c6ae99SBarry Smith /*
2347c6ae99SBarry Smith        This does the drawing for one particular field
2447c6ae99SBarry Smith     in one particular set of coordinates. It is a callback
2547c6ae99SBarry Smith     called from PetscDrawZoom()
2647c6ae99SBarry Smith */
2766976f2fSJacob Faibussowitsch static PetscErrorCode VecView_MPI_Draw_DA2d_Zoom(PetscDraw draw, void *ctx)
28d71ae5a4SJacob Faibussowitsch {
2947c6ae99SBarry Smith   ZoomCtx           *zctx = (ZoomCtx *)ctx;
30e5ab1681SLisandro Dalcin   PetscInt           m, n, i, j, k, dof, id, c1, c2, c3, c4;
31e5ab1681SLisandro Dalcin   PetscReal          min, max, x1, x2, x3, x4, y_1, y2, y3, y4;
32e5ab1681SLisandro Dalcin   const PetscScalar *xy, *v;
3347c6ae99SBarry Smith 
3447c6ae99SBarry Smith   PetscFunctionBegin;
3547c6ae99SBarry Smith   m   = zctx->m;
3647c6ae99SBarry Smith   n   = zctx->n;
37e5ab1681SLisandro Dalcin   dof = zctx->dof;
3847c6ae99SBarry Smith   k   = zctx->k;
3947c6ae99SBarry Smith   xy  = zctx->xy;
40e5ab1681SLisandro Dalcin   v   = zctx->v;
4147c6ae99SBarry Smith   min = zctx->min;
42f3f0eb19SBarry Smith   max = zctx->max;
4347c6ae99SBarry Smith 
4447c6ae99SBarry Smith   /* PetscDraw the contour plot patch */
45d0609cedSBarry Smith   PetscDrawCollectiveBegin(draw);
4647c6ae99SBarry Smith   for (j = 0; j < n - 1; j++) {
4747c6ae99SBarry Smith     for (i = 0; i < m - 1; i++) {
480e4fe250SBarry Smith       id  = i + j * m;
490e4fe250SBarry Smith       x1  = PetscRealPart(xy[2 * id]);
500e4fe250SBarry Smith       y_1 = PetscRealPart(xy[2 * id + 1]);
51e5ab1681SLisandro Dalcin       c1  = PetscDrawRealToColor(PetscRealPart(v[k + dof * id]), min, max);
520e4fe250SBarry Smith 
530e4fe250SBarry Smith       id = i + j * m + 1;
540e4fe250SBarry Smith       x2 = PetscRealPart(xy[2 * id]);
55a39a4c7dSLisandro Dalcin       y2 = PetscRealPart(xy[2 * id + 1]);
56e5ab1681SLisandro Dalcin       c2 = PetscDrawRealToColor(PetscRealPart(v[k + dof * id]), min, max);
570e4fe250SBarry Smith 
580e4fe250SBarry Smith       id = i + j * m + 1 + m;
59a39a4c7dSLisandro Dalcin       x3 = PetscRealPart(xy[2 * id]);
600e4fe250SBarry Smith       y3 = PetscRealPart(xy[2 * id + 1]);
61e5ab1681SLisandro Dalcin       c3 = PetscDrawRealToColor(PetscRealPart(v[k + dof * id]), min, max);
620e4fe250SBarry Smith 
630e4fe250SBarry Smith       id = i + j * m + m;
64a39a4c7dSLisandro Dalcin       x4 = PetscRealPart(xy[2 * id]);
65a39a4c7dSLisandro Dalcin       y4 = PetscRealPart(xy[2 * id + 1]);
66e5ab1681SLisandro Dalcin       c4 = PetscDrawRealToColor(PetscRealPart(v[k + dof * id]), min, max);
67f3f0eb19SBarry Smith 
689566063dSJacob Faibussowitsch       PetscCall(PetscDrawTriangle(draw, x1, y_1, x2, y2, x3, y3, c1, c2, c3));
699566063dSJacob Faibussowitsch       PetscCall(PetscDrawTriangle(draw, x1, y_1, x3, y3, x4, y4, c1, c3, c4));
7047c6ae99SBarry Smith       if (zctx->showgrid) {
719566063dSJacob Faibussowitsch         PetscCall(PetscDrawLine(draw, x1, y_1, x2, y2, PETSC_DRAW_BLACK));
729566063dSJacob Faibussowitsch         PetscCall(PetscDrawLine(draw, x2, y2, x3, y3, PETSC_DRAW_BLACK));
739566063dSJacob Faibussowitsch         PetscCall(PetscDrawLine(draw, x3, y3, x4, y4, PETSC_DRAW_BLACK));
749566063dSJacob Faibussowitsch         PetscCall(PetscDrawLine(draw, x4, y4, x1, y_1, PETSC_DRAW_BLACK));
7547c6ae99SBarry Smith       }
7647c6ae99SBarry Smith     }
7747c6ae99SBarry Smith   }
787fe7c8feSLisandro Dalcin   if (zctx->showaxis && !zctx->rank) {
79e5ab1681SLisandro Dalcin     if (zctx->name0 || zctx->name1) {
80109c9344SBarry Smith       PetscReal xl, yl, xr, yr, x, y;
819566063dSJacob Faibussowitsch       PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));
82e5ab1681SLisandro Dalcin       x  = xl + .30 * (xr - xl);
83109c9344SBarry Smith       xl = xl + .01 * (xr - xl);
84e5ab1681SLisandro Dalcin       y  = yr - .30 * (yr - yl);
85109c9344SBarry Smith       yl = yl + .01 * (yr - yl);
869566063dSJacob Faibussowitsch       if (zctx->name0) PetscCall(PetscDrawString(draw, x, yl, PETSC_DRAW_BLACK, zctx->name0));
879566063dSJacob Faibussowitsch       if (zctx->name1) PetscCall(PetscDrawStringVertical(draw, xl, y, PETSC_DRAW_BLACK, zctx->name1));
88109c9344SBarry Smith     }
890e4fe250SBarry Smith     /*
900e4fe250SBarry Smith        Ideally we would use the PetscDrawAxis object to manage displaying the coordinate limits
910e4fe250SBarry Smith        but that may require some refactoring.
920e4fe250SBarry Smith     */
93e5ab1681SLisandro Dalcin     {
947fe7c8feSLisandro Dalcin       double    xmin = (double)zctx->xmin, ymin = (double)zctx->ymin;
957fe7c8feSLisandro Dalcin       double    xmax = (double)zctx->xmax, ymax = (double)zctx->ymax;
969371c9d4SSatish Balay       char      value[16];
979371c9d4SSatish Balay       size_t    len;
989371c9d4SSatish Balay       PetscReal w;
999566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(value, 16, "%0.2e", xmin));
1009566063dSJacob Faibussowitsch       PetscCall(PetscDrawString(draw, xmin, ymin - .05 * (ymax - ymin), PETSC_DRAW_BLACK, value));
1019566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(value, 16, "%0.2e", xmax));
1029566063dSJacob Faibussowitsch       PetscCall(PetscStrlen(value, &len));
1039566063dSJacob Faibussowitsch       PetscCall(PetscDrawStringGetSize(draw, &w, NULL));
1049566063dSJacob Faibussowitsch       PetscCall(PetscDrawString(draw, xmax - len * w, ymin - .05 * (ymax - ymin), PETSC_DRAW_BLACK, value));
1059566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(value, 16, "%0.2e", ymin));
1069566063dSJacob Faibussowitsch       PetscCall(PetscDrawString(draw, xmin - .05 * (xmax - xmin), ymin, PETSC_DRAW_BLACK, value));
1079566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(value, 16, "%0.2e", ymax));
1089566063dSJacob Faibussowitsch       PetscCall(PetscDrawString(draw, xmin - .05 * (xmax - xmin), ymax, PETSC_DRAW_BLACK, value));
109e5ab1681SLisandro Dalcin     }
110e5ab1681SLisandro Dalcin   }
111d0609cedSBarry Smith   PetscDrawCollectiveEnd(draw);
1123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11347c6ae99SBarry Smith }
11447c6ae99SBarry Smith 
11566976f2fSJacob Faibussowitsch static PetscErrorCode VecView_MPI_Draw_DA2d(Vec xin, PetscViewer viewer)
116d71ae5a4SJacob Faibussowitsch {
1179a42bb27SBarry Smith   DM                  da, dac, dag;
118a74ba6f7SBarry Smith   PetscInt            N, s, M, w, ncoors = 4;
11947c6ae99SBarry Smith   const PetscInt     *lx, *ly;
120e5ab1681SLisandro Dalcin   PetscReal           coors[4];
12147c6ae99SBarry Smith   PetscDraw           draw, popup;
12247c6ae99SBarry Smith   PetscBool           isnull, useports = PETSC_FALSE;
12347c6ae99SBarry Smith   MPI_Comm            comm;
12447c6ae99SBarry Smith   Vec                 xlocal, xcoor, xcoorl;
125bff4a2f0SMatthew G. Knepley   DMBoundaryType      bx, by;
126aa219208SBarry Smith   DMDAStencilType     st;
12747c6ae99SBarry Smith   ZoomCtx             zctx;
1280298fd71SBarry Smith   PetscDrawViewPorts *ports = NULL;
12947c6ae99SBarry Smith   PetscViewerFormat   format;
13020d0051dSBarry Smith   PetscInt           *displayfields;
13167dd0837SBarry Smith   PetscInt            ndisplayfields, i, nbounds;
13267dd0837SBarry Smith   const PetscReal    *bounds;
13347c6ae99SBarry Smith 
13447c6ae99SBarry Smith   PetscFunctionBegin;
13547c6ae99SBarry Smith   zctx.showgrid = PETSC_FALSE;
1367fe7c8feSLisandro Dalcin   zctx.showaxis = PETSC_TRUE;
1378865f1eaSKarl Rupp 
1389566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
1399566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw, &isnull));
1403ba16761SJacob Faibussowitsch   if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
1415b399a63SLisandro Dalcin 
1429566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetBounds(viewer, &nbounds, &bounds));
14347c6ae99SBarry Smith 
1449566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
1457a8be351SBarry Smith   PetscCheck(da, PetscObjectComm((PetscObject)xin), PETSC_ERR_ARG_WRONG, "Vector not generated from a DMDA");
14647c6ae99SBarry Smith 
1479566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)xin, &comm));
1489566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &zctx.rank));
14947c6ae99SBarry Smith 
1509566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, NULL, &M, &N, NULL, &zctx.m, &zctx.n, NULL, &w, &s, &bx, &by, NULL, &st));
1519566063dSJacob Faibussowitsch   PetscCall(DMDAGetOwnershipRanges(da, &lx, &ly, NULL));
15247c6ae99SBarry Smith 
15347c6ae99SBarry Smith   /*
15447c6ae99SBarry Smith      Obtain a sequential vector that is going to contain the local values plus ONE layer of
155aa219208SBarry Smith      ghosted values to draw the graphics from. We also need its corresponding DMDA (dac) that will
156d5b43468SJose E. Roman      update the local values plus ONE layer of ghost values.
15747c6ae99SBarry Smith   */
1589566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "GraphicsGhosted", (PetscObject *)&xlocal));
15947c6ae99SBarry Smith   if (!xlocal) {
160bff4a2f0SMatthew G. Knepley     if (bx != DM_BOUNDARY_NONE || by != DM_BOUNDARY_NONE || s != 1 || st != DMDA_STENCIL_BOX) {
16147c6ae99SBarry Smith       /*
16247c6ae99SBarry Smith          if original da is not of stencil width one, or periodic or not a box stencil then
163aa219208SBarry Smith          create a special DMDA to handle one level of ghost points for graphics
16447c6ae99SBarry Smith       */
1659566063dSJacob Faibussowitsch       PetscCall(DMDACreate2d(comm, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, M, N, zctx.m, zctx.n, w, 1, lx, ly, &dac));
1669566063dSJacob Faibussowitsch       PetscCall(DMSetUp(dac));
1676aad120cSJose E. Roman       PetscCall(PetscInfo(da, "Creating auxiliary DMDA for managing graphics ghost points\n"));
16847c6ae99SBarry Smith     } else {
16947c6ae99SBarry Smith       /* otherwise we can use the da we already have */
17047c6ae99SBarry Smith       dac = da;
17147c6ae99SBarry Smith     }
17247c6ae99SBarry Smith     /* create local vector for holding ghosted values used in graphics */
1739566063dSJacob Faibussowitsch     PetscCall(DMCreateLocalVector(dac, &xlocal));
17447c6ae99SBarry Smith     if (dac != da) {
175*15229ffcSPierre Jolivet       /* don't keep any public reference of this DMDA, it is only available through xlocal */
1769566063dSJacob Faibussowitsch       PetscCall(PetscObjectDereference((PetscObject)dac));
17747c6ae99SBarry Smith     } else {
17847c6ae99SBarry Smith       /* remove association between xlocal and da, because below we compose in the opposite
17947c6ae99SBarry Smith          direction and if we left this connect we'd get a loop, so the objects could
18047c6ae99SBarry Smith          never be destroyed */
1819566063dSJacob Faibussowitsch       PetscCall(PetscObjectRemoveReference((PetscObject)xlocal, "__PETSc_dm"));
18247c6ae99SBarry Smith     }
1839566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)da, "GraphicsGhosted", (PetscObject)xlocal));
1849566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)xlocal));
18547c6ae99SBarry Smith   } else {
186bff4a2f0SMatthew G. Knepley     if (bx != DM_BOUNDARY_NONE || by != DM_BOUNDARY_NONE || s != 1 || st != DMDA_STENCIL_BOX) {
1879566063dSJacob Faibussowitsch       PetscCall(VecGetDM(xlocal, &dac));
188f7923d8aSBarry Smith     } else {
189f7923d8aSBarry Smith       dac = da;
19047c6ae99SBarry Smith     }
19147c6ae99SBarry Smith   }
19247c6ae99SBarry Smith 
19347c6ae99SBarry Smith   /*
19447c6ae99SBarry Smith       Get local (ghosted) values of vector
19547c6ae99SBarry Smith   */
1969566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dac, xin, INSERT_VALUES, xlocal));
1979566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dac, xin, INSERT_VALUES, xlocal));
1989566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xlocal, &zctx.v));
19947c6ae99SBarry Smith 
200832b7cebSLisandro Dalcin   /*
201832b7cebSLisandro Dalcin       Get coordinates of nodes
202832b7cebSLisandro Dalcin   */
2039566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinates(da, &xcoor));
20447c6ae99SBarry Smith   if (!xcoor) {
2059566063dSJacob Faibussowitsch     PetscCall(DMDASetUniformCoordinates(da, 0.0, 1.0, 0.0, 1.0, 0.0, 0.0));
2069566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(da, &xcoor));
20747c6ae99SBarry Smith   }
20847c6ae99SBarry Smith 
20947c6ae99SBarry Smith   /*
21047c6ae99SBarry Smith       Determine the min and max coordinates in plot
21147c6ae99SBarry Smith   */
2129566063dSJacob Faibussowitsch   PetscCall(VecStrideMin(xcoor, 0, NULL, &zctx.xmin));
2139566063dSJacob Faibussowitsch   PetscCall(VecStrideMax(xcoor, 0, NULL, &zctx.xmax));
2149566063dSJacob Faibussowitsch   PetscCall(VecStrideMin(xcoor, 1, NULL, &zctx.ymin));
2159566063dSJacob Faibussowitsch   PetscCall(VecStrideMax(xcoor, 1, NULL, &zctx.ymax));
2169566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-draw_contour_axis", &zctx.showaxis, NULL));
2177fe7c8feSLisandro Dalcin   if (zctx.showaxis) {
2189371c9d4SSatish Balay     coors[0] = zctx.xmin - .05 * (zctx.xmax - zctx.xmin);
2199371c9d4SSatish Balay     coors[1] = zctx.ymin - .05 * (zctx.ymax - zctx.ymin);
2209371c9d4SSatish Balay     coors[2] = zctx.xmax + .05 * (zctx.xmax - zctx.xmin);
2219371c9d4SSatish Balay     coors[3] = zctx.ymax + .05 * (zctx.ymax - zctx.ymin);
2227fe7c8feSLisandro Dalcin   } else {
2239371c9d4SSatish Balay     coors[0] = zctx.xmin;
2249371c9d4SSatish Balay     coors[1] = zctx.ymin;
2259371c9d4SSatish Balay     coors[2] = zctx.xmax;
2269371c9d4SSatish Balay     coors[3] = zctx.ymax;
2277fe7c8feSLisandro Dalcin   }
2289566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetRealArray(NULL, NULL, "-draw_coordinates", coors, &ncoors, NULL));
2299566063dSJacob Faibussowitsch   PetscCall(PetscInfo(da, "Preparing DMDA 2d contour plot coordinates %g %g %g %g\n", (double)coors[0], (double)coors[1], (double)coors[2], (double)coors[3]));
230a74ba6f7SBarry Smith 
23147c6ae99SBarry Smith   /*
232832b7cebSLisandro Dalcin       Get local ghosted version of coordinates
23347c6ae99SBarry Smith   */
2349566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "GraphicsCoordinateGhosted", (PetscObject *)&xcoorl));
23547c6ae99SBarry Smith   if (!xcoorl) {
236aa219208SBarry Smith     /* create DMDA to get local version of graphics */
2379566063dSJacob Faibussowitsch     PetscCall(DMDACreate2d(comm, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, M, N, zctx.m, zctx.n, 2, 1, lx, ly, &dag));
2389566063dSJacob Faibussowitsch     PetscCall(DMSetUp(dag));
2396aad120cSJose E. Roman     PetscCall(PetscInfo(dag, "Creating auxiliary DMDA for managing graphics coordinates ghost points\n"));
2409566063dSJacob Faibussowitsch     PetscCall(DMCreateLocalVector(dag, &xcoorl));
2419566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)da, "GraphicsCoordinateGhosted", (PetscObject)xcoorl));
2429566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)dag));
2439566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)xcoorl));
2441baa6e33SBarry Smith   } else PetscCall(VecGetDM(xcoorl, &dag));
2459566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dag, xcoor, INSERT_VALUES, xcoorl));
2469566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dag, xcoor, INSERT_VALUES, xcoorl));
2479566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xcoorl, &zctx.xy));
2489566063dSJacob Faibussowitsch   PetscCall(DMDAGetCoordinateName(da, 0, &zctx.name0));
2499566063dSJacob Faibussowitsch   PetscCall(DMDAGetCoordinateName(da, 1, &zctx.name1));
25047c6ae99SBarry Smith 
25147c6ae99SBarry Smith   /*
25247c6ae99SBarry Smith       Get information about size of area each processor must do graphics for
25347c6ae99SBarry Smith   */
2549566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(dac, NULL, &M, &N, NULL, NULL, NULL, NULL, &zctx.dof, NULL, &bx, &by, NULL, NULL));
2559566063dSJacob Faibussowitsch   PetscCall(DMDAGetGhostCorners(dac, NULL, NULL, NULL, &zctx.m, &zctx.n, NULL));
2569566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-draw_contour_grid", &zctx.showgrid, NULL));
2574e6118eeSBarry Smith 
2589566063dSJacob Faibussowitsch   PetscCall(DMDASelectFields(da, &ndisplayfields, &displayfields));
2599566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
2609566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-draw_ports", &useports, NULL));
261832b7cebSLisandro Dalcin   if (format == PETSC_VIEWER_DRAW_PORTS) useports = PETSC_TRUE;
262832b7cebSLisandro Dalcin   if (useports) {
2639566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
2649566063dSJacob Faibussowitsch     PetscCall(PetscDrawCheckResizedWindow(draw));
2659566063dSJacob Faibussowitsch     PetscCall(PetscDrawClear(draw));
2669566063dSJacob Faibussowitsch     PetscCall(PetscDrawViewPortsCreate(draw, ndisplayfields, &ports));
267e5ab1681SLisandro Dalcin   }
26820d0051dSBarry Smith 
269832b7cebSLisandro Dalcin   /*
270832b7cebSLisandro Dalcin       Loop over each field; drawing each in a different window
271832b7cebSLisandro Dalcin   */
27220d0051dSBarry Smith   for (i = 0; i < ndisplayfields; i++) {
27320d0051dSBarry Smith     zctx.k = displayfields[i];
2745b399a63SLisandro Dalcin 
275e5ab1681SLisandro Dalcin     /* determine the min and max value in plot */
2769566063dSJacob Faibussowitsch     PetscCall(VecStrideMin(xin, zctx.k, NULL, &zctx.min));
2779566063dSJacob Faibussowitsch     PetscCall(VecStrideMax(xin, zctx.k, NULL, &zctx.max));
27867dd0837SBarry Smith     if (zctx.k < nbounds) {
279f3f0eb19SBarry Smith       zctx.min = bounds[2 * zctx.k];
280f3f0eb19SBarry Smith       zctx.max = bounds[2 * zctx.k + 1];
28167dd0837SBarry Smith     }
28247c6ae99SBarry Smith     if (zctx.min == zctx.max) {
28347c6ae99SBarry Smith       zctx.min -= 1.e-12;
28447c6ae99SBarry Smith       zctx.max += 1.e-12;
28547c6ae99SBarry Smith     }
2869566063dSJacob Faibussowitsch     PetscCall(PetscInfo(da, "DMDA 2d contour plot min %g max %g\n", (double)zctx.min, (double)zctx.max));
28747c6ae99SBarry Smith 
288832b7cebSLisandro Dalcin     if (useports) {
2899566063dSJacob Faibussowitsch       PetscCall(PetscDrawViewPortsSet(ports, i));
290832b7cebSLisandro Dalcin     } else {
291832b7cebSLisandro Dalcin       const char *title;
2929566063dSJacob Faibussowitsch       PetscCall(PetscViewerDrawGetDraw(viewer, i, &draw));
2939566063dSJacob Faibussowitsch       PetscCall(DMDAGetFieldName(da, zctx.k, &title));
2949566063dSJacob Faibussowitsch       if (title) PetscCall(PetscDrawSetTitle(draw, title));
295832b7cebSLisandro Dalcin     }
296832b7cebSLisandro Dalcin 
2979566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw, &popup));
2989566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup, zctx.min, zctx.max));
2999566063dSJacob Faibussowitsch     PetscCall(PetscDrawSetCoordinates(draw, coors[0], coors[1], coors[2], coors[3]));
3009566063dSJacob Faibussowitsch     PetscCall(PetscDrawZoom(draw, VecView_MPI_Draw_DA2d_Zoom, &zctx));
3019566063dSJacob Faibussowitsch     if (!useports) PetscCall(PetscDrawSave(draw));
30247c6ae99SBarry Smith   }
303832b7cebSLisandro Dalcin   if (useports) {
3049566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
3059566063dSJacob Faibussowitsch     PetscCall(PetscDrawSave(draw));
306832b7cebSLisandro Dalcin   }
307832b7cebSLisandro Dalcin 
3089566063dSJacob Faibussowitsch   PetscCall(PetscDrawViewPortsDestroy(ports));
3099566063dSJacob Faibussowitsch   PetscCall(PetscFree(displayfields));
3109566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xcoorl, &zctx.xy));
3119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xlocal, &zctx.v));
3123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31347c6ae99SBarry Smith }
31447c6ae99SBarry Smith 
3150da24e51SJuha Jäykkä #if defined(PETSC_HAVE_HDF5)
316d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecGetHDF5ChunkSize(DM_DA *da, Vec xin, PetscInt dimension, PetscInt timestep, hsize_t *chunkDims)
317d71ae5a4SJacob Faibussowitsch {
318d4190030SJed Brown   PetscMPIInt comm_size;
319561a82e7SJed Brown   hsize_t     chunk_size, target_size, dim;
320561a82e7SJed Brown   hsize_t     vec_size = sizeof(PetscScalar) * da->M * da->N * da->P * da->w;
321561a82e7SJed Brown   hsize_t     avg_local_vec_size, KiB = 1024, MiB = KiB * KiB, GiB = MiB * KiB, min_size = MiB;
322561a82e7SJed Brown   hsize_t     max_chunks     = 64 * KiB; /* HDF5 internal limitation */
323561a82e7SJed Brown   hsize_t     max_chunk_size = 4 * GiB;  /* HDF5 internal limitation */
32484179ffaSJed Brown   PetscInt    zslices = da->p, yslices = da->n, xslices = da->m;
3250da24e51SJuha Jäykkä 
326cb5c4f94SJuha Jäykkä   PetscFunctionBegin;
3279566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)xin), &comm_size));
328faa75363SBarry Smith   avg_local_vec_size = (hsize_t)PetscCeilInt(vec_size, comm_size); /* we will attempt to use this as the chunk size */
3290da24e51SJuha Jäykkä 
330faa75363SBarry Smith   target_size = (hsize_t)PetscMin((PetscInt64)vec_size, PetscMin((PetscInt64)max_chunk_size, PetscMax((PetscInt64)avg_local_vec_size, PetscMax(PetscCeilInt64(vec_size, max_chunks), (PetscInt64)min_size))));
3317d310018SBarry Smith   /* following line uses sizeof(PetscReal) instead of sizeof(PetscScalar) because the last dimension of chunkDims[] captures the 2* when complex numbers are being used */
3327d310018SBarry Smith   chunk_size = (hsize_t)PetscMax(1, chunkDims[0]) * PetscMax(1, chunkDims[1]) * PetscMax(1, chunkDims[2]) * PetscMax(1, chunkDims[3]) * PetscMax(1, chunkDims[4]) * PetscMax(1, chunkDims[5]) * sizeof(PetscReal);
3330da24e51SJuha Jäykkä 
334cb5c4f94SJuha Jäykkä   /*
335cb5c4f94SJuha Jäykkä    if size/rank > max_chunk_size, we need radical measures: even going down to
336cb5c4f94SJuha Jäykkä    avg_local_vec_size is not enough, so we simply use chunk size of 4 GiB no matter
337cb5c4f94SJuha Jäykkä    what, composed in the most efficient way possible.
338cb5c4f94SJuha Jäykkä    N.B. this minimises the number of chunks, which may or may not be the optimal
339cb5c4f94SJuha Jäykkä    solution. In a BG, for example, the optimal solution is probably to make # chunks = #
340cb5c4f94SJuha Jäykkä    IO nodes involved, but this author has no access to a BG to figure out how to
341cb5c4f94SJuha Jäykkä    reliably find the right number. And even then it may or may not be enough.
342cb5c4f94SJuha Jäykkä    */
3430da24e51SJuha Jäykkä   if (avg_local_vec_size > max_chunk_size) {
344cb5c4f94SJuha Jäykkä     /* check if we can just split local z-axis: is that enough? */
345faa75363SBarry Smith     zslices = PetscCeilInt(vec_size, da->p * max_chunk_size) * zslices;
3460da24e51SJuha Jäykkä     if (zslices > da->P) {
347cb5c4f94SJuha Jäykkä       /* lattice is too large in xy-directions, splitting z only is not enough */
3480da24e51SJuha Jäykkä       zslices = da->P;
349faa75363SBarry Smith       yslices = PetscCeilInt(vec_size, zslices * da->n * max_chunk_size) * yslices;
3500da24e51SJuha Jäykkä       if (yslices > da->N) {
351cb5c4f94SJuha Jäykkä         /* lattice is too large in x-direction, splitting along z, y is not enough */
3520da24e51SJuha Jäykkä         yslices = da->N;
353faa75363SBarry Smith         xslices = PetscCeilInt(vec_size, zslices * yslices * da->m * max_chunk_size) * xslices;
3540da24e51SJuha Jäykkä       }
3550da24e51SJuha Jäykkä     }
3560da24e51SJuha Jäykkä     dim = 0;
357ad540459SPierre Jolivet     if (timestep >= 0) ++dim;
358cb5c4f94SJuha Jäykkä     /* prefer to split z-axis, even down to planar slices */
359c73cfb54SMatthew G. Knepley     if (dimension == 3) {
360cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->P / zslices;
361cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->N / yslices;
362cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->M / xslices;
3630da24e51SJuha Jäykkä     } else {
364cb5c4f94SJuha Jäykkä       /* This is a 2D world exceeding 4GiB in size; yes, I've seen them, even used myself */
365cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->N / yslices;
366cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->M / xslices;
3670da24e51SJuha Jäykkä     }
3680da24e51SJuha Jäykkä     chunk_size = (hsize_t)PetscMax(1, chunkDims[0]) * PetscMax(1, chunkDims[1]) * PetscMax(1, chunkDims[2]) * PetscMax(1, chunkDims[3]) * PetscMax(1, chunkDims[4]) * PetscMax(1, chunkDims[5]) * sizeof(double);
3690da24e51SJuha Jäykkä   } else {
3700da24e51SJuha Jäykkä     if (target_size < chunk_size) {
371cb5c4f94SJuha Jäykkä       /* only change the defaults if target_size < chunk_size */
3720da24e51SJuha Jäykkä       dim = 0;
373ad540459SPierre Jolivet       if (timestep >= 0) ++dim;
374cb5c4f94SJuha Jäykkä       /* prefer to split z-axis, even down to planar slices */
375c73cfb54SMatthew G. Knepley       if (dimension == 3) {
376cb5c4f94SJuha Jäykkä         /* try splitting the z-axis to core-size bits, i.e. divide chunk size by # comm_size in z-direction */
3770da24e51SJuha Jäykkä         if (target_size >= chunk_size / da->p) {
378cb5c4f94SJuha Jäykkä           /* just make chunks the size of <local_z>x<whole_world_y>x<whole_world_x>x<dof> */
379faa75363SBarry Smith           chunkDims[dim] = (hsize_t)PetscCeilInt(da->P, da->p);
3800da24e51SJuha Jäykkä         } else {
381cb5c4f94SJuha Jäykkä           /* oops, just splitting the z-axis is NOT ENOUGH, need to split more; let's be
382cb5c4f94SJuha Jäykkä            radical and let everyone write all they've got */
383faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->P, da->p);
384faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->N, da->n);
385faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->M, da->m);
3860da24e51SJuha Jäykkä         }
3870da24e51SJuha Jäykkä       } else {
388cb5c4f94SJuha Jäykkä         /* This is a 2D world exceeding 4GiB in size; yes, I've seen them, even used myself */
3890da24e51SJuha Jäykkä         if (target_size >= chunk_size / da->n) {
390cb5c4f94SJuha Jäykkä           /* just make chunks the size of <local_z>x<whole_world_y>x<whole_world_x>x<dof> */
391faa75363SBarry Smith           chunkDims[dim] = (hsize_t)PetscCeilInt(da->N, da->n);
3920da24e51SJuha Jäykkä         } else {
393cb5c4f94SJuha Jäykkä           /* oops, just splitting the z-axis is NOT ENOUGH, need to split more; let's be
394cb5c4f94SJuha Jäykkä            radical and let everyone write all they've got */
395faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->N, da->n);
396faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->M, da->m);
3970da24e51SJuha Jäykkä         }
3980da24e51SJuha Jäykkä       }
3990da24e51SJuha Jäykkä       chunk_size = (hsize_t)PetscMax(1, chunkDims[0]) * PetscMax(1, chunkDims[1]) * PetscMax(1, chunkDims[2]) * PetscMax(1, chunkDims[3]) * PetscMax(1, chunkDims[4]) * PetscMax(1, chunkDims[5]) * sizeof(double);
4000da24e51SJuha Jäykkä     } else {
401cb5c4f94SJuha Jäykkä       /* precomputed chunks are fine, we don't need to do anything */
4020da24e51SJuha Jäykkä     }
4030da24e51SJuha Jäykkä   }
4043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4050da24e51SJuha Jäykkä }
4060da24e51SJuha Jäykkä #endif
40747c6ae99SBarry Smith 
40847c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
40966976f2fSJacob Faibussowitsch static PetscErrorCode VecView_MPI_HDF5_DA(Vec xin, PetscViewer viewer)
410d71ae5a4SJacob Faibussowitsch {
4112d95be3dSVaclav Hapla   PetscViewer_HDF5  *hdf5 = (PetscViewer_HDF5 *)viewer->data;
4129b2a5a86SJed Brown   DM                 dm;
4139b2a5a86SJed Brown   DM_DA             *da;
41447c6ae99SBarry Smith   hid_t              filespace;  /* file dataspace identifier */
4158e2ae6d7SMichael Kraus   hid_t              chunkspace; /* chunk dataset property identifier */
41647c6ae99SBarry Smith   hid_t              dset_id;    /* dataset identifier */
41747c6ae99SBarry Smith   hid_t              memspace;   /* memory dataspace identifier */
41847c6ae99SBarry Smith   hid_t              file_id;
41915214e8eSMatthew G Knepley   hid_t              group;
4209a0502c6SHåkon Strandenes   hid_t              memscalartype;  /* scalar type for mem (H5T_NATIVE_FLOAT or H5T_NATIVE_DOUBLE) */
4219a0502c6SHåkon Strandenes   hid_t              filescalartype; /* scalar type for file (H5T_NATIVE_FLOAT or H5T_NATIVE_DOUBLE) */
422d9a4edebSJed Brown   hsize_t            dim;
4230da24e51SJuha Jäykkä   hsize_t            maxDims[6] = {0}, dims[6] = {0}, chunkDims[6] = {0}, count[6] = {0}, offset[6] = {0}; /* we depend on these being sane later on  */
424d7dd068bSVaclav Hapla   PetscBool          timestepping = PETSC_FALSE, dim2, spoutput;
425d7dd068bSVaclav Hapla   PetscInt           timestep     = PETSC_MIN_INT, dimension;
4265edff71fSBarry Smith   const PetscScalar *x;
4278e2ae6d7SMichael Kraus   const char        *vecname;
42847c6ae99SBarry Smith 
42947c6ae99SBarry Smith   PetscFunctionBegin;
4303014b61aSVaclav Hapla   PetscCall(PetscViewerHDF5OpenGroup(viewer, NULL, &file_id, &group));
4319566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5IsTimestepping(viewer, &timestepping));
43248a46eb9SPierre Jolivet   if (timestepping) PetscCall(PetscViewerHDF5GetTimestep(viewer, &timestep));
4339566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5GetBaseDimension2(viewer, &dim2));
4349566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5GetSPOutput(viewer, &spoutput));
43515214e8eSMatthew G Knepley 
4369566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &dm));
4377a8be351SBarry Smith   PetscCheck(dm, PetscObjectComm((PetscObject)xin), PETSC_ERR_ARG_WRONG, "Vector not generated from a DMDA");
4389b2a5a86SJed Brown   da = (DM_DA *)dm->data;
4399566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dimension));
44047c6ae99SBarry Smith 
4418e2ae6d7SMichael Kraus   /* Create the dataspace for the dataset.
4428e2ae6d7SMichael Kraus    *
4438e2ae6d7SMichael Kraus    * dims - holds the current dimensions of the dataset
4448e2ae6d7SMichael Kraus    *
4458e2ae6d7SMichael Kraus    * maxDims - holds the maximum dimensions of the dataset (unlimited
4468e2ae6d7SMichael Kraus    * for the number of time steps with the current dimensions for the
4478e2ae6d7SMichael Kraus    * other dimensions; so only additional time steps can be added).
4488e2ae6d7SMichael Kraus    *
4498e2ae6d7SMichael Kraus    * chunkDims - holds the size of a single time step (required to
4508e2ae6d7SMichael Kraus    * permit extending dataset).
4518e2ae6d7SMichael Kraus    */
4528e2ae6d7SMichael Kraus   dim = 0;
4538e2ae6d7SMichael Kraus   if (timestep >= 0) {
4548e2ae6d7SMichael Kraus     dims[dim]      = timestep + 1;
4558e2ae6d7SMichael Kraus     maxDims[dim]   = H5S_UNLIMITED;
4568e2ae6d7SMichael Kraus     chunkDims[dim] = 1;
4578e2ae6d7SMichael Kraus     ++dim;
4588e2ae6d7SMichael Kraus   }
459c73cfb54SMatthew G. Knepley   if (dimension == 3) {
4609566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(da->P, dims + dim));
4618e2ae6d7SMichael Kraus     maxDims[dim]   = dims[dim];
4628e2ae6d7SMichael Kraus     chunkDims[dim] = dims[dim];
4638e2ae6d7SMichael Kraus     ++dim;
4648e2ae6d7SMichael Kraus   }
465c73cfb54SMatthew G. Knepley   if (dimension > 1) {
4669566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(da->N, dims + dim));
4678e2ae6d7SMichael Kraus     maxDims[dim]   = dims[dim];
4688e2ae6d7SMichael Kraus     chunkDims[dim] = dims[dim];
4698e2ae6d7SMichael Kraus     ++dim;
4708e2ae6d7SMichael Kraus   }
4719566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast(da->M, dims + dim));
4728e2ae6d7SMichael Kraus   maxDims[dim]   = dims[dim];
4738e2ae6d7SMichael Kraus   chunkDims[dim] = dims[dim];
4748e2ae6d7SMichael Kraus   ++dim;
47582ea9b62SBarry Smith   if (da->w > 1 || dim2) {
4769566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(da->w, dims + dim));
4778e2ae6d7SMichael Kraus     maxDims[dim]   = dims[dim];
4788e2ae6d7SMichael Kraus     chunkDims[dim] = dims[dim];
4798e2ae6d7SMichael Kraus     ++dim;
4808e2ae6d7SMichael Kraus   }
48147c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
4828e2ae6d7SMichael Kraus   dims[dim]      = 2;
4838e2ae6d7SMichael Kraus   maxDims[dim]   = dims[dim];
4848e2ae6d7SMichael Kraus   chunkDims[dim] = dims[dim];
4858e2ae6d7SMichael Kraus   ++dim;
48647c6ae99SBarry Smith   #endif
4870da24e51SJuha Jäykkä 
4889566063dSJacob Faibussowitsch   PetscCall(VecGetHDF5ChunkSize(da, xin, dimension, timestep, chunkDims));
4890da24e51SJuha Jäykkä 
490792fecdfSBarry Smith   PetscCallHDF5Return(filespace, H5Screate_simple, (dim, dims, maxDims));
49147c6ae99SBarry Smith 
49215214e8eSMatthew G Knepley   #if defined(PETSC_USE_REAL_SINGLE)
4939a0502c6SHåkon Strandenes   memscalartype  = H5T_NATIVE_FLOAT;
4949a0502c6SHåkon Strandenes   filescalartype = H5T_NATIVE_FLOAT;
49515214e8eSMatthew G Knepley   #elif defined(PETSC_USE_REAL___FLOAT128)
49615214e8eSMatthew G Knepley     #error "HDF5 output with 128 bit floats not supported."
497570b7f6dSBarry Smith   #elif defined(PETSC_USE_REAL___FP16)
498570b7f6dSBarry Smith     #error "HDF5 output with 16 bit floats not supported."
49915214e8eSMatthew G Knepley   #else
5009a0502c6SHåkon Strandenes   memscalartype = H5T_NATIVE_DOUBLE;
5019a0502c6SHåkon Strandenes   if (spoutput == PETSC_TRUE) filescalartype = H5T_NATIVE_FLOAT;
5029a0502c6SHåkon Strandenes   else filescalartype = H5T_NATIVE_DOUBLE;
50315214e8eSMatthew G Knepley   #endif
50415214e8eSMatthew G Knepley 
50547c6ae99SBarry Smith   /* Create the dataset with default properties and close filespace */
5069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)xin, &vecname));
50715214e8eSMatthew G Knepley   if (!H5Lexists(group, vecname, H5P_DEFAULT)) {
5088e2ae6d7SMichael Kraus     /* Create chunk */
509792fecdfSBarry Smith     PetscCallHDF5Return(chunkspace, H5Pcreate, (H5P_DATASET_CREATE));
510792fecdfSBarry Smith     PetscCallHDF5(H5Pset_chunk, (chunkspace, dim, chunkDims));
5118e2ae6d7SMichael Kraus 
512792fecdfSBarry Smith     PetscCallHDF5Return(dset_id, H5Dcreate2, (group, vecname, filescalartype, filespace, H5P_DEFAULT, chunkspace, H5P_DEFAULT));
51315214e8eSMatthew G Knepley   } else {
514792fecdfSBarry Smith     PetscCallHDF5Return(dset_id, H5Dopen2, (group, vecname, H5P_DEFAULT));
515792fecdfSBarry Smith     PetscCallHDF5(H5Dset_extent, (dset_id, dims));
51615214e8eSMatthew G Knepley   }
517792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (filespace));
51847c6ae99SBarry Smith 
51947c6ae99SBarry Smith   /* Each process defines a dataset and writes it to the hyperslab in the file */
5208e2ae6d7SMichael Kraus   dim = 0;
5218e2ae6d7SMichael Kraus   if (timestep >= 0) {
5228e2ae6d7SMichael Kraus     offset[dim] = timestep;
5238e2ae6d7SMichael Kraus     ++dim;
5248e2ae6d7SMichael Kraus   }
5259566063dSJacob Faibussowitsch   if (dimension == 3) PetscCall(PetscHDF5IntCast(da->zs, offset + dim++));
5269566063dSJacob Faibussowitsch   if (dimension > 1) PetscCall(PetscHDF5IntCast(da->ys, offset + dim++));
5279566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast(da->xs / da->w, offset + dim++));
52882ea9b62SBarry Smith   if (da->w > 1 || dim2) offset[dim++] = 0;
52947c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
5308e2ae6d7SMichael Kraus   offset[dim++] = 0;
53147c6ae99SBarry Smith   #endif
5328e2ae6d7SMichael Kraus   dim = 0;
5338e2ae6d7SMichael Kraus   if (timestep >= 0) {
5348e2ae6d7SMichael Kraus     count[dim] = 1;
5358e2ae6d7SMichael Kraus     ++dim;
5368e2ae6d7SMichael Kraus   }
5379566063dSJacob Faibussowitsch   if (dimension == 3) PetscCall(PetscHDF5IntCast(da->ze - da->zs, count + dim++));
5389566063dSJacob Faibussowitsch   if (dimension > 1) PetscCall(PetscHDF5IntCast(da->ye - da->ys, count + dim++));
5399566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast((da->xe - da->xs) / da->w, count + dim++));
5409566063dSJacob Faibussowitsch   if (da->w > 1 || dim2) PetscCall(PetscHDF5IntCast(da->w, count + dim++));
54147c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
5428e2ae6d7SMichael Kraus   count[dim++] = 2;
54347c6ae99SBarry Smith   #endif
544792fecdfSBarry Smith   PetscCallHDF5Return(memspace, H5Screate_simple, (dim, count, NULL));
545792fecdfSBarry Smith   PetscCallHDF5Return(filespace, H5Dget_space, (dset_id));
546792fecdfSBarry Smith   PetscCallHDF5(H5Sselect_hyperslab, (filespace, H5S_SELECT_SET, offset, NULL, count, NULL));
54747c6ae99SBarry Smith 
5489566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xin, &x));
549792fecdfSBarry Smith   PetscCallHDF5(H5Dwrite, (dset_id, memscalartype, memspace, filespace, hdf5->dxpl_id, x));
550792fecdfSBarry Smith   PetscCallHDF5(H5Fflush, (file_id, H5F_SCOPE_GLOBAL));
5519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xin, &x));
55247c6ae99SBarry Smith 
553e0552f36Ssajid__ali   #if defined(PETSC_USE_COMPLEX)
554e0552f36Ssajid__ali   {
555e0552f36Ssajid__ali     PetscBool tru = PETSC_TRUE;
5569566063dSJacob Faibussowitsch     PetscCall(PetscViewerHDF5WriteObjectAttribute(viewer, (PetscObject)xin, "complex", PETSC_BOOL, &tru));
557e0552f36Ssajid__ali   }
558e0552f36Ssajid__ali   #endif
55948a46eb9SPierre Jolivet   if (timestepping) PetscCall(PetscViewerHDF5WriteObjectAttribute(viewer, (PetscObject)xin, "timestepping", PETSC_BOOL, &timestepping));
560e0552f36Ssajid__ali 
56147c6ae99SBarry Smith   /* Close/release resources */
562ad540459SPierre Jolivet   if (group != file_id) PetscCallHDF5(H5Gclose, (group));
563792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (filespace));
564792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (memspace));
565792fecdfSBarry Smith   PetscCallHDF5(H5Dclose, (dset_id));
5669566063dSJacob Faibussowitsch   PetscCall(PetscInfo(xin, "Wrote Vec object with name %s\n", vecname));
5673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56847c6ae99SBarry Smith }
56947c6ae99SBarry Smith #endif
57047c6ae99SBarry Smith 
57109573ac7SBarry Smith extern PetscErrorCode VecView_MPI_Draw_DA1d(Vec, PetscViewer);
57247c6ae99SBarry Smith 
57347c6ae99SBarry Smith #if defined(PETSC_HAVE_MPIIO)
574d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDAArrayMPIIO(DM da, PetscViewer viewer, Vec xin, PetscBool write)
575d71ae5a4SJacob Faibussowitsch {
57647c6ae99SBarry Smith   MPI_File           mfdes;
57747c6ae99SBarry Smith   PetscMPIInt        gsizes[4], lsizes[4], lstarts[4], asiz, dof;
57847c6ae99SBarry Smith   MPI_Datatype       view;
57947c6ae99SBarry Smith   const PetscScalar *array;
58047c6ae99SBarry Smith   MPI_Offset         off;
58147c6ae99SBarry Smith   MPI_Aint           ub, ul;
58247c6ae99SBarry Smith   PetscInt           type, rows, vecrows, tr[2];
58347c6ae99SBarry Smith   DM_DA             *dd = (DM_DA *)da->data;
5840c169764Sdmay   PetscBool          skipheader;
58547c6ae99SBarry Smith 
58647c6ae99SBarry Smith   PetscFunctionBegin;
5879566063dSJacob Faibussowitsch   PetscCall(VecGetSize(xin, &vecrows));
5889566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetSkipHeader(viewer, &skipheader));
58947c6ae99SBarry Smith   if (!write) {
59047c6ae99SBarry Smith     /* Read vector header. */
5910c169764Sdmay     if (!skipheader) {
5929566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryRead(viewer, tr, 2, NULL, PETSC_INT));
59347c6ae99SBarry Smith       type = tr[0];
59447c6ae99SBarry Smith       rows = tr[1];
59508401ef6SPierre Jolivet       PetscCheck(type == VEC_FILE_CLASSID, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_WRONG, "Not vector next in file");
59608401ef6SPierre Jolivet       PetscCheck(rows == vecrows, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_SIZ, "Vector in file not same size as DMDA vector");
5970c169764Sdmay     }
59847c6ae99SBarry Smith   } else {
59947c6ae99SBarry Smith     tr[0] = VEC_FILE_CLASSID;
60047c6ae99SBarry Smith     tr[1] = vecrows;
60148a46eb9SPierre Jolivet     if (!skipheader) PetscCall(PetscViewerBinaryWrite(viewer, tr, 2, PETSC_INT));
6020c169764Sdmay   }
60347c6ae99SBarry Smith 
6049566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->w, &dof));
6054dc2109aSBarry Smith   gsizes[0] = dof;
6069566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->M, gsizes + 1));
6079566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->N, gsizes + 2));
6089566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->P, gsizes + 3));
6094dc2109aSBarry Smith   lsizes[0] = dof;
6109566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast((dd->xe - dd->xs) / dof, lsizes + 1));
6119566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->ye - dd->ys, lsizes + 2));
6129566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->ze - dd->zs, lsizes + 3));
6134dc2109aSBarry Smith   lstarts[0] = 0;
6149566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->xs / dof, lstarts + 1));
6159566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->ys, lstarts + 2));
6169566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->zs, lstarts + 3));
6179566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_create_subarray(da->dim + 1, gsizes, lsizes, lstarts, MPI_ORDER_FORTRAN, MPIU_SCALAR, &view));
6189566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&view));
61947c6ae99SBarry Smith 
6209566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetMPIIODescriptor(viewer, &mfdes));
6219566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetMPIIOOffset(viewer, &off));
6229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_File_set_view(mfdes, off, MPIU_SCALAR, view, (char *)"native", MPI_INFO_NULL));
6239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xin, &array));
62447c6ae99SBarry Smith   asiz = lsizes[1] * (lsizes[2] > 0 ? lsizes[2] : 1) * (lsizes[3] > 0 ? lsizes[3] : 1) * dof;
6251baa6e33SBarry Smith   if (write) PetscCall(MPIU_File_write_all(mfdes, (PetscScalar *)array, asiz, MPIU_SCALAR, MPI_STATUS_IGNORE));
6261baa6e33SBarry Smith   else PetscCall(MPIU_File_read_all(mfdes, (PetscScalar *)array, asiz, MPIU_SCALAR, MPI_STATUS_IGNORE));
6279566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_get_extent(view, &ul, &ub));
6289566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryAddMPIIOOffset(viewer, ub));
6299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xin, &array));
6309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&view));
6313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
63247c6ae99SBarry Smith }
63347c6ae99SBarry Smith #endif
63447c6ae99SBarry Smith 
635d71ae5a4SJacob Faibussowitsch PetscErrorCode VecView_MPI_DA(Vec xin, PetscViewer viewer)
636d71ae5a4SJacob Faibussowitsch {
6379a42bb27SBarry Smith   DM        da;
63847c6ae99SBarry Smith   PetscInt  dim;
63947c6ae99SBarry Smith   Vec       natural;
6408135c375SStefano Zampini   PetscBool isdraw, isvtk, isglvis;
64147c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
64247c6ae99SBarry Smith   PetscBool ishdf5;
64347c6ae99SBarry Smith #endif
6443f3fd955SJed Brown   const char       *prefix, *name;
645a261c58fSBarry Smith   PetscViewerFormat format;
64647c6ae99SBarry Smith 
64747c6ae99SBarry Smith   PetscFunctionBegin;
6489566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
6497a8be351SBarry Smith   PetscCheck(da, PetscObjectComm((PetscObject)xin), PETSC_ERR_ARG_WRONG, "Vector not generated from a DMDA");
6509566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
6519566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERVTK, &isvtk));
65247c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
6539566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
65447c6ae99SBarry Smith #endif
6559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERGLVIS, &isglvis));
65647c6ae99SBarry Smith   if (isdraw) {
6579566063dSJacob Faibussowitsch     PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL));
65847c6ae99SBarry Smith     if (dim == 1) {
6599566063dSJacob Faibussowitsch       PetscCall(VecView_MPI_Draw_DA1d(xin, viewer));
66047c6ae99SBarry Smith     } else if (dim == 2) {
6619566063dSJacob Faibussowitsch       PetscCall(VecView_MPI_Draw_DA2d(xin, viewer));
66263a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)da), PETSC_ERR_SUP, "Cannot graphically view vector associated with this dimensional DMDA %" PetscInt_FMT, dim);
66301d7c5c3SPatrick Sanan   } else if (isvtk) { /* Duplicate the Vec */
6644061b8bfSJed Brown     Vec Y;
6659566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(xin, &Y));
666b51b94faSJed Brown     if (((PetscObject)xin)->name) {
667b51b94faSJed Brown       /* If xin was named, copy the name over to Y. The duplicate names are safe because nobody else will ever see Y. */
6689566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)Y, ((PetscObject)xin)->name));
669b51b94faSJed Brown     }
6709566063dSJacob Faibussowitsch     PetscCall(VecCopy(xin, Y));
671a8f87f1dSPatrick Sanan     {
672a8f87f1dSPatrick Sanan       PetscObject dmvtk;
673a8f87f1dSPatrick Sanan       PetscBool   compatible, compatibleSet;
6749566063dSJacob Faibussowitsch       PetscCall(PetscViewerVTKGetDM(viewer, &dmvtk));
675a8f87f1dSPatrick Sanan       if (dmvtk) {
676064a246eSJacob Faibussowitsch         PetscValidHeaderSpecific((DM)dmvtk, DM_CLASSID, 2);
6779566063dSJacob Faibussowitsch         PetscCall(DMGetCompatibility(da, (DM)dmvtk, &compatible, &compatibleSet));
6787a8be351SBarry Smith         PetscCheck(compatibleSet && compatible, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_INCOMP, "Cannot confirm compatibility of DMs associated with Vecs viewed in the same VTK file. Check that grids are the same.");
679a8f87f1dSPatrick Sanan       }
6809566063dSJacob Faibussowitsch       PetscCall(PetscViewerVTKAddField(viewer, (PetscObject)da, DMDAVTKWriteAll, PETSC_DEFAULT, PETSC_VTK_POINT_FIELD, PETSC_FALSE, (PetscObject)Y));
681a8f87f1dSPatrick Sanan     }
68247c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
68347c6ae99SBarry Smith   } else if (ishdf5) {
6849566063dSJacob Faibussowitsch     PetscCall(VecView_MPI_HDF5_DA(xin, viewer));
68547c6ae99SBarry Smith #endif
6868135c375SStefano Zampini   } else if (isglvis) {
6879566063dSJacob Faibussowitsch     PetscCall(VecView_GLVis(xin, viewer));
68847c6ae99SBarry Smith   } else {
68947c6ae99SBarry Smith #if defined(PETSC_HAVE_MPIIO)
69047c6ae99SBarry Smith     PetscBool isbinary, isMPIIO;
69147c6ae99SBarry Smith 
6929566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
69347c6ae99SBarry Smith     if (isbinary) {
6949566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryGetUseMPIIO(viewer, &isMPIIO));
69547c6ae99SBarry Smith       if (isMPIIO) {
6969566063dSJacob Faibussowitsch         PetscCall(DMDAArrayMPIIO(da, viewer, xin, PETSC_TRUE));
6973ba16761SJacob Faibussowitsch         PetscFunctionReturn(PETSC_SUCCESS);
69847c6ae99SBarry Smith       }
69947c6ae99SBarry Smith     }
70047c6ae99SBarry Smith #endif
70147c6ae99SBarry Smith 
70247c6ae99SBarry Smith     /* call viewer on natural ordering */
7039566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetOptionsPrefix((PetscObject)xin, &prefix));
7049566063dSJacob Faibussowitsch     PetscCall(DMDACreateNaturalVector(da, &natural));
7059566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)natural, prefix));
7069566063dSJacob Faibussowitsch     PetscCall(DMDAGlobalToNaturalBegin(da, xin, INSERT_VALUES, natural));
7079566063dSJacob Faibussowitsch     PetscCall(DMDAGlobalToNaturalEnd(da, xin, INSERT_VALUES, natural));
7089566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)xin, &name));
7099566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)natural, name));
710a261c58fSBarry Smith 
7119566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
712a261c58fSBarry Smith     if (format == PETSC_VIEWER_BINARY_MATLAB) {
713a261c58fSBarry Smith       /* temporarily remove viewer format so it won't trigger in the VecView() */
7149566063dSJacob Faibussowitsch       PetscCall(PetscViewerPushFormat(viewer, PETSC_VIEWER_DEFAULT));
715a261c58fSBarry Smith     }
716a261c58fSBarry Smith 
71723f88b65SBarry Smith     ((PetscObject)natural)->donotPetscObjectPrintClassNamePrefixType = PETSC_TRUE;
7189566063dSJacob Faibussowitsch     PetscCall(VecView(natural, viewer));
71923f88b65SBarry Smith     ((PetscObject)natural)->donotPetscObjectPrintClassNamePrefixType = PETSC_FALSE;
720a261c58fSBarry Smith 
721a261c58fSBarry Smith     if (format == PETSC_VIEWER_BINARY_MATLAB) {
722a261c58fSBarry Smith       MPI_Comm    comm;
723a261c58fSBarry Smith       FILE       *info;
724a261c58fSBarry Smith       const char *fieldname;
725da88d4d4SJed Brown       char        fieldbuf[256];
726a261c58fSBarry Smith       PetscInt    dim, ni, nj, nk, pi, pj, pk, dof, n;
727a261c58fSBarry Smith 
728a261c58fSBarry Smith       /* set the viewer format back into the viewer */
7299566063dSJacob Faibussowitsch       PetscCall(PetscViewerPopFormat(viewer));
7309566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetComm((PetscObject)viewer, &comm));
7319566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryGetInfoPointer(viewer, &info));
7329566063dSJacob Faibussowitsch       PetscCall(DMDAGetInfo(da, &dim, &ni, &nj, &nk, &pi, &pj, &pk, &dof, NULL, NULL, NULL, NULL, NULL));
7339566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n"));
7349566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#$$ tmp = PetscBinaryRead(fd); \n"));
73548a46eb9SPierre Jolivet       if (dim == 1) PetscCall(PetscFPrintf(comm, info, "#$$ tmp = reshape(tmp,%" PetscInt_FMT ",%" PetscInt_FMT ");\n", dof, ni));
73648a46eb9SPierre Jolivet       if (dim == 2) PetscCall(PetscFPrintf(comm, info, "#$$ tmp = reshape(tmp,%" PetscInt_FMT ",%" PetscInt_FMT ",%" PetscInt_FMT ");\n", dof, ni, nj));
73748a46eb9SPierre Jolivet       if (dim == 3) PetscCall(PetscFPrintf(comm, info, "#$$ tmp = reshape(tmp,%" PetscInt_FMT ",%" PetscInt_FMT ",%" PetscInt_FMT ",%" PetscInt_FMT ");\n", dof, ni, nj, nk));
738a261c58fSBarry Smith 
739a261c58fSBarry Smith       for (n = 0; n < dof; n++) {
7409566063dSJacob Faibussowitsch         PetscCall(DMDAGetFieldName(da, n, &fieldname));
741da88d4d4SJed Brown         if (!fieldname || !fieldname[0]) {
74263a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(fieldbuf, sizeof fieldbuf, "field%" PetscInt_FMT, n));
743da88d4d4SJed Brown           fieldname = fieldbuf;
744a261c58fSBarry Smith         }
74548a46eb9SPierre Jolivet         if (dim == 1) PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s.%s = squeeze(tmp(%" PetscInt_FMT ",:))';\n", name, fieldname, n + 1));
74648a46eb9SPierre Jolivet         if (dim == 2) PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s.%s = squeeze(tmp(%" PetscInt_FMT ",:,:))';\n", name, fieldname, n + 1));
74748a46eb9SPierre Jolivet         if (dim == 3) PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s.%s = permute(squeeze(tmp(%" PetscInt_FMT ",:,:,:)),[2 1 3]);\n", name, fieldname, n + 1));
748a261c58fSBarry Smith       }
7499566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#$$ clear tmp; \n"));
7509566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n"));
751a261c58fSBarry Smith     }
752a261c58fSBarry Smith 
7539566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&natural));
75447c6ae99SBarry Smith   }
7553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
75647c6ae99SBarry Smith }
75747c6ae99SBarry Smith 
75847c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
75966976f2fSJacob Faibussowitsch static PetscErrorCode VecLoad_HDF5_DA(Vec xin, PetscViewer viewer)
760d71ae5a4SJacob Faibussowitsch {
7612d95be3dSVaclav Hapla   PetscViewer_HDF5 *hdf5 = (PetscViewer_HDF5 *)viewer->data;
7629a42bb27SBarry Smith   DM                da;
76315b861d2SVaclav Hapla   int               dim, rdim;
764ec7ae49cSHåkon Strandenes   hsize_t           dims[6] = {0}, count[6] = {0}, offset[6] = {0};
765d7dd068bSVaclav Hapla   PetscBool         dim2 = PETSC_FALSE, timestepping = PETSC_FALSE;
766d7dd068bSVaclav Hapla   PetscInt          dimension, timestep              = PETSC_MIN_INT, dofInd;
76747c6ae99SBarry Smith   PetscScalar      *x;
76847c6ae99SBarry Smith   const char       *vecname;
76947c6ae99SBarry Smith   hid_t             filespace; /* file dataspace identifier */
77047c6ae99SBarry Smith   hid_t             dset_id;   /* dataset identifier */
77147c6ae99SBarry Smith   hid_t             memspace;  /* memory dataspace identifier */
772bfd264e7SBarry Smith   hid_t             file_id, group;
7737bcbaff4SBarry Smith   hid_t             scalartype; /* scalar type (H5T_NATIVE_FLOAT or H5T_NATIVE_DOUBLE) */
7749c7c4993SBarry Smith   DM_DA            *dd;
77547c6ae99SBarry Smith 
77647c6ae99SBarry Smith   PetscFunctionBegin;
7777bcbaff4SBarry Smith   #if defined(PETSC_USE_REAL_SINGLE)
7787bcbaff4SBarry Smith   scalartype = H5T_NATIVE_FLOAT;
7797bcbaff4SBarry Smith   #elif defined(PETSC_USE_REAL___FLOAT128)
7807bcbaff4SBarry Smith     #error "HDF5 output with 128 bit floats not supported."
781570b7f6dSBarry Smith   #elif defined(PETSC_USE_REAL___FP16)
782570b7f6dSBarry Smith     #error "HDF5 output with 16 bit floats not supported."
7837bcbaff4SBarry Smith   #else
7847bcbaff4SBarry Smith   scalartype = H5T_NATIVE_DOUBLE;
7857bcbaff4SBarry Smith   #endif
7867bcbaff4SBarry Smith 
7873014b61aSVaclav Hapla   PetscCall(PetscViewerHDF5OpenGroup(viewer, NULL, &file_id, &group));
7889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)xin, &vecname));
7899566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5CheckTimestepping_Internal(viewer, vecname));
7909566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5IsTimestepping(viewer, &timestepping));
79148a46eb9SPierre Jolivet   if (timestepping) PetscCall(PetscViewerHDF5GetTimestep(viewer, &timestep));
7929566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
7939c7c4993SBarry Smith   dd = (DM_DA *)da->data;
7949566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(da, &dimension));
79547c6ae99SBarry Smith 
796ec7ae49cSHåkon Strandenes   /* Open dataset */
797792fecdfSBarry Smith   PetscCallHDF5Return(dset_id, H5Dopen2, (group, vecname, H5P_DEFAULT));
79847c6ae99SBarry Smith 
799ec7ae49cSHåkon Strandenes   /* Retrieve the dataspace for the dataset */
800792fecdfSBarry Smith   PetscCallHDF5Return(filespace, H5Dget_space, (dset_id));
801792fecdfSBarry Smith   PetscCallHDF5Return(rdim, H5Sget_simple_extent_dims, (filespace, dims, NULL));
802ec7ae49cSHåkon Strandenes 
803ec7ae49cSHåkon Strandenes   /* Expected dimension for holding the dof's */
80447c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
805ec7ae49cSHåkon Strandenes   dofInd = rdim - 2;
806ec7ae49cSHåkon Strandenes   #else
807ec7ae49cSHåkon Strandenes   dofInd = rdim - 1;
80847c6ae99SBarry Smith   #endif
809ec7ae49cSHåkon Strandenes 
810ec7ae49cSHåkon Strandenes   /* The expected number of dimensions, assuming basedimension2 = false */
811ec7ae49cSHåkon Strandenes   dim = dimension;
812ec7ae49cSHåkon Strandenes   if (dd->w > 1) ++dim;
813ec7ae49cSHåkon Strandenes   if (timestep >= 0) ++dim;
81447c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
815ec7ae49cSHåkon Strandenes   ++dim;
81647c6ae99SBarry Smith   #endif
817ec7ae49cSHåkon Strandenes 
818ec7ae49cSHåkon Strandenes   /* In this case the input dataset have one extra, unexpected dimension. */
819ec7ae49cSHåkon Strandenes   if (rdim == dim + 1) {
820ec7ae49cSHåkon Strandenes     /* In this case the block size unity */
821ec7ae49cSHåkon Strandenes     if (dd->w == 1 && dims[dofInd] == 1) dim2 = PETSC_TRUE;
822ec7ae49cSHåkon Strandenes 
823ec7ae49cSHåkon Strandenes     /* Special error message for the case where dof does not match the input file */
82463a3b9bcSJacob Faibussowitsch     else PetscCheck(dd->w == (PetscInt)dims[dofInd], PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Number of dofs in file is %" PetscInt_FMT ", not %" PetscInt_FMT " as expected", (PetscInt)dims[dofInd], dd->w);
825ec7ae49cSHåkon Strandenes 
826ec7ae49cSHåkon Strandenes     /* Other cases where rdim != dim cannot be handled currently */
82763a3b9bcSJacob Faibussowitsch   } else PetscCheck(rdim == dim, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Dimension of array in file is %d, not %d as expected with dof = %" PetscInt_FMT, rdim, dim, dd->w);
828ec7ae49cSHåkon Strandenes 
829ec7ae49cSHåkon Strandenes   /* Set up the hyperslab size */
830ec7ae49cSHåkon Strandenes   dim = 0;
831ec7ae49cSHåkon Strandenes   if (timestep >= 0) {
832ec7ae49cSHåkon Strandenes     offset[dim] = timestep;
833ec7ae49cSHåkon Strandenes     count[dim]  = 1;
834ec7ae49cSHåkon Strandenes     ++dim;
835ec7ae49cSHåkon Strandenes   }
836ec7ae49cSHåkon Strandenes   if (dimension == 3) {
8379566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->zs, offset + dim));
8389566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->ze - dd->zs, count + dim));
839ec7ae49cSHåkon Strandenes     ++dim;
840ec7ae49cSHåkon Strandenes   }
841ec7ae49cSHåkon Strandenes   if (dimension > 1) {
8429566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->ys, offset + dim));
8439566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->ye - dd->ys, count + dim));
844ec7ae49cSHåkon Strandenes     ++dim;
845ec7ae49cSHåkon Strandenes   }
8469566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast(dd->xs / dd->w, offset + dim));
8479566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast((dd->xe - dd->xs) / dd->w, count + dim));
848ec7ae49cSHåkon Strandenes   ++dim;
849ec7ae49cSHåkon Strandenes   if (dd->w > 1 || dim2) {
850ec7ae49cSHåkon Strandenes     offset[dim] = 0;
8519566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->w, count + dim));
852ec7ae49cSHåkon Strandenes     ++dim;
853ec7ae49cSHåkon Strandenes   }
854ec7ae49cSHåkon Strandenes   #if defined(PETSC_USE_COMPLEX)
855ec7ae49cSHåkon Strandenes   offset[dim] = 0;
856ec7ae49cSHåkon Strandenes   count[dim]  = 2;
857ec7ae49cSHåkon Strandenes   ++dim;
858ec7ae49cSHåkon Strandenes   #endif
859ec7ae49cSHåkon Strandenes 
860ec7ae49cSHåkon Strandenes   /* Create the memory and filespace */
861792fecdfSBarry Smith   PetscCallHDF5Return(memspace, H5Screate_simple, (dim, count, NULL));
862792fecdfSBarry Smith   PetscCallHDF5(H5Sselect_hyperslab, (filespace, H5S_SELECT_SET, offset, NULL, count, NULL));
86347c6ae99SBarry Smith 
8649566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xin, &x));
865792fecdfSBarry Smith   PetscCallHDF5(H5Dread, (dset_id, scalartype, memspace, filespace, hdf5->dxpl_id, x));
8669566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xin, &x));
86747c6ae99SBarry Smith 
86847c6ae99SBarry Smith   /* Close/release resources */
869ad540459SPierre Jolivet   if (group != file_id) PetscCallHDF5(H5Gclose, (group));
870792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (filespace));
871792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (memspace));
872792fecdfSBarry Smith   PetscCallHDF5(H5Dclose, (dset_id));
8733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
87447c6ae99SBarry Smith }
87547c6ae99SBarry Smith #endif
87647c6ae99SBarry Smith 
87766976f2fSJacob Faibussowitsch static PetscErrorCode VecLoad_Binary_DA(Vec xin, PetscViewer viewer)
878d71ae5a4SJacob Faibussowitsch {
8799a42bb27SBarry Smith   DM          da;
88047c6ae99SBarry Smith   Vec         natural;
88147c6ae99SBarry Smith   const char *prefix;
88247c6ae99SBarry Smith   PetscInt    bs;
88347c6ae99SBarry Smith   PetscBool   flag;
88447c6ae99SBarry Smith   DM_DA      *dd;
88547c6ae99SBarry Smith #if defined(PETSC_HAVE_MPIIO)
88647c6ae99SBarry Smith   PetscBool isMPIIO;
88747c6ae99SBarry Smith #endif
88847c6ae99SBarry Smith 
88947c6ae99SBarry Smith   PetscFunctionBegin;
8909566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
89147c6ae99SBarry Smith   dd = (DM_DA *)da->data;
89247c6ae99SBarry Smith #if defined(PETSC_HAVE_MPIIO)
8939566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetUseMPIIO(viewer, &isMPIIO));
89447c6ae99SBarry Smith   if (isMPIIO) {
8959566063dSJacob Faibussowitsch     PetscCall(DMDAArrayMPIIO(da, viewer, xin, PETSC_FALSE));
8963ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
89747c6ae99SBarry Smith   }
89847c6ae99SBarry Smith #endif
89947c6ae99SBarry Smith 
9009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)xin, &prefix));
9019566063dSJacob Faibussowitsch   PetscCall(DMDACreateNaturalVector(da, &natural));
9029566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)natural, ((PetscObject)xin)->name));
9039566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)natural, prefix));
9049566063dSJacob Faibussowitsch   PetscCall(VecLoad(natural, viewer));
9059566063dSJacob Faibussowitsch   PetscCall(DMDANaturalToGlobalBegin(da, natural, INSERT_VALUES, xin));
9069566063dSJacob Faibussowitsch   PetscCall(DMDANaturalToGlobalEnd(da, natural, INSERT_VALUES, xin));
9079566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&natural));
9089566063dSJacob Faibussowitsch   PetscCall(PetscInfo(xin, "Loading vector from natural ordering into DMDA\n"));
9099566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)xin)->prefix, "-vecload_block_size", &bs, &flag));
91048a46eb9SPierre Jolivet   if (flag && bs != dd->w) PetscCall(PetscInfo(xin, "Block size in file %" PetscInt_FMT " not equal to DMDA's dof %" PetscInt_FMT "\n", bs, dd->w));
9113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91247c6ae99SBarry Smith }
91347c6ae99SBarry Smith 
914d71ae5a4SJacob Faibussowitsch PetscErrorCode VecLoad_Default_DA(Vec xin, PetscViewer viewer)
915d71ae5a4SJacob Faibussowitsch {
9169a42bb27SBarry Smith   DM        da;
91747c6ae99SBarry Smith   PetscBool isbinary;
91847c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
91947c6ae99SBarry Smith   PetscBool ishdf5;
92047c6ae99SBarry Smith #endif
92147c6ae99SBarry Smith 
92247c6ae99SBarry Smith   PetscFunctionBegin;
9239566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
9247a8be351SBarry Smith   PetscCheck(da, PetscObjectComm((PetscObject)xin), PETSC_ERR_ARG_WRONG, "Vector not generated from a DMDA");
92547c6ae99SBarry Smith 
92647c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
9279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
92847c6ae99SBarry Smith #endif
9299566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
93047c6ae99SBarry Smith 
93147c6ae99SBarry Smith   if (isbinary) {
9329566063dSJacob Faibussowitsch     PetscCall(VecLoad_Binary_DA(xin, viewer));
93347c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
93447c6ae99SBarry Smith   } else if (ishdf5) {
9359566063dSJacob Faibussowitsch     PetscCall(VecLoad_HDF5_DA(xin, viewer));
93647c6ae99SBarry Smith #endif
93798921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Viewer type %s not supported for vector loading", ((PetscObject)viewer)->type_name);
9383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
93947c6ae99SBarry Smith }
940