xref: /petsc/src/dm/impls/da/gr2.c (revision 1690c2ae071c7584458d4e437df7b47bc4686b3c)
147c6ae99SBarry Smith /*
2aa219208SBarry Smith    Plots vectors obtained with DMDACreate2d()
347c6ae99SBarry Smith */
447c6ae99SBarry Smith 
5af0996ceSBarry Smith #include <petsc/private/dmdaimpl.h> /*I  "petscdmda.h"   I*/
68135c375SStefano Zampini #include <petsc/private/glvisvecimpl.h>
72d95be3dSVaclav Hapla #include <petsc/private/viewerhdf5impl.h>
89804daf3SBarry Smith #include <petscdraw.h>
947c6ae99SBarry Smith 
1047c6ae99SBarry Smith /*
1147c6ae99SBarry Smith         The data that is passed into the graphics callback
1247c6ae99SBarry Smith */
1347c6ae99SBarry Smith typedef struct {
14e5ab1681SLisandro Dalcin   PetscMPIInt        rank;
15e5ab1681SLisandro Dalcin   PetscInt           m, n, dof, k;
16e5ab1681SLisandro Dalcin   PetscReal          xmin, xmax, ymin, ymax, min, max;
175edff71fSBarry Smith   const PetscScalar *xy, *v;
187fe7c8feSLisandro Dalcin   PetscBool          showaxis, showgrid;
19109c9344SBarry Smith   const char        *name0, *name1;
2047c6ae99SBarry Smith } ZoomCtx;
2147c6ae99SBarry Smith 
2247c6ae99SBarry Smith /*
2347c6ae99SBarry Smith        This does the drawing for one particular field
2447c6ae99SBarry Smith     in one particular set of coordinates. It is a callback
2547c6ae99SBarry Smith     called from PetscDrawZoom()
2647c6ae99SBarry Smith */
2766976f2fSJacob Faibussowitsch static PetscErrorCode VecView_MPI_Draw_DA2d_Zoom(PetscDraw draw, void *ctx)
28d71ae5a4SJacob Faibussowitsch {
2947c6ae99SBarry Smith   ZoomCtx           *zctx = (ZoomCtx *)ctx;
306497c311SBarry Smith   PetscInt           m, n, i, j, k, dof, id;
316497c311SBarry Smith   int                c1, c2, c3, c4;
32e5ab1681SLisandro Dalcin   PetscReal          min, max, x1, x2, x3, x4, y_1, y2, y3, y4;
33e5ab1681SLisandro Dalcin   const PetscScalar *xy, *v;
3447c6ae99SBarry Smith 
3547c6ae99SBarry Smith   PetscFunctionBegin;
3647c6ae99SBarry Smith   m   = zctx->m;
3747c6ae99SBarry Smith   n   = zctx->n;
38e5ab1681SLisandro Dalcin   dof = zctx->dof;
3947c6ae99SBarry Smith   k   = zctx->k;
4047c6ae99SBarry Smith   xy  = zctx->xy;
41e5ab1681SLisandro Dalcin   v   = zctx->v;
4247c6ae99SBarry Smith   min = zctx->min;
43f3f0eb19SBarry Smith   max = zctx->max;
4447c6ae99SBarry Smith 
4547c6ae99SBarry Smith   /* PetscDraw the contour plot patch */
46d0609cedSBarry Smith   PetscDrawCollectiveBegin(draw);
4747c6ae99SBarry Smith   for (j = 0; j < n - 1; j++) {
4847c6ae99SBarry Smith     for (i = 0; i < m - 1; i++) {
490e4fe250SBarry Smith       id  = i + j * m;
500e4fe250SBarry Smith       x1  = PetscRealPart(xy[2 * id]);
510e4fe250SBarry Smith       y_1 = PetscRealPart(xy[2 * id + 1]);
52e5ab1681SLisandro Dalcin       c1  = PetscDrawRealToColor(PetscRealPart(v[k + dof * id]), min, max);
530e4fe250SBarry Smith 
540e4fe250SBarry Smith       id = i + j * m + 1;
550e4fe250SBarry Smith       x2 = PetscRealPart(xy[2 * id]);
56a39a4c7dSLisandro Dalcin       y2 = PetscRealPart(xy[2 * id + 1]);
57e5ab1681SLisandro Dalcin       c2 = PetscDrawRealToColor(PetscRealPart(v[k + dof * id]), min, max);
580e4fe250SBarry Smith 
590e4fe250SBarry Smith       id = i + j * m + 1 + m;
60a39a4c7dSLisandro Dalcin       x3 = PetscRealPart(xy[2 * id]);
610e4fe250SBarry Smith       y3 = PetscRealPart(xy[2 * id + 1]);
62e5ab1681SLisandro Dalcin       c3 = PetscDrawRealToColor(PetscRealPart(v[k + dof * id]), min, max);
630e4fe250SBarry Smith 
640e4fe250SBarry Smith       id = i + j * m + m;
65a39a4c7dSLisandro Dalcin       x4 = PetscRealPart(xy[2 * id]);
66a39a4c7dSLisandro Dalcin       y4 = PetscRealPart(xy[2 * id + 1]);
67e5ab1681SLisandro Dalcin       c4 = PetscDrawRealToColor(PetscRealPart(v[k + dof * id]), min, max);
68f3f0eb19SBarry Smith 
699566063dSJacob Faibussowitsch       PetscCall(PetscDrawTriangle(draw, x1, y_1, x2, y2, x3, y3, c1, c2, c3));
709566063dSJacob Faibussowitsch       PetscCall(PetscDrawTriangle(draw, x1, y_1, x3, y3, x4, y4, c1, c3, c4));
7147c6ae99SBarry Smith       if (zctx->showgrid) {
729566063dSJacob Faibussowitsch         PetscCall(PetscDrawLine(draw, x1, y_1, x2, y2, PETSC_DRAW_BLACK));
739566063dSJacob Faibussowitsch         PetscCall(PetscDrawLine(draw, x2, y2, x3, y3, PETSC_DRAW_BLACK));
749566063dSJacob Faibussowitsch         PetscCall(PetscDrawLine(draw, x3, y3, x4, y4, PETSC_DRAW_BLACK));
759566063dSJacob Faibussowitsch         PetscCall(PetscDrawLine(draw, x4, y4, x1, y_1, PETSC_DRAW_BLACK));
7647c6ae99SBarry Smith       }
7747c6ae99SBarry Smith     }
7847c6ae99SBarry Smith   }
797fe7c8feSLisandro Dalcin   if (zctx->showaxis && !zctx->rank) {
80e5ab1681SLisandro Dalcin     if (zctx->name0 || zctx->name1) {
81109c9344SBarry Smith       PetscReal xl, yl, xr, yr, x, y;
829566063dSJacob Faibussowitsch       PetscCall(PetscDrawGetCoordinates(draw, &xl, &yl, &xr, &yr));
83e5ab1681SLisandro Dalcin       x  = xl + .30 * (xr - xl);
84109c9344SBarry Smith       xl = xl + .01 * (xr - xl);
85e5ab1681SLisandro Dalcin       y  = yr - .30 * (yr - yl);
86109c9344SBarry Smith       yl = yl + .01 * (yr - yl);
879566063dSJacob Faibussowitsch       if (zctx->name0) PetscCall(PetscDrawString(draw, x, yl, PETSC_DRAW_BLACK, zctx->name0));
889566063dSJacob Faibussowitsch       if (zctx->name1) PetscCall(PetscDrawStringVertical(draw, xl, y, PETSC_DRAW_BLACK, zctx->name1));
89109c9344SBarry Smith     }
900e4fe250SBarry Smith     /*
910e4fe250SBarry Smith        Ideally we would use the PetscDrawAxis object to manage displaying the coordinate limits
920e4fe250SBarry Smith        but that may require some refactoring.
930e4fe250SBarry Smith     */
94e5ab1681SLisandro Dalcin     {
957fe7c8feSLisandro Dalcin       double    xmin = (double)zctx->xmin, ymin = (double)zctx->ymin;
967fe7c8feSLisandro Dalcin       double    xmax = (double)zctx->xmax, ymax = (double)zctx->ymax;
979371c9d4SSatish Balay       char      value[16];
989371c9d4SSatish Balay       size_t    len;
999371c9d4SSatish Balay       PetscReal w;
1009566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(value, 16, "%0.2e", xmin));
1019566063dSJacob Faibussowitsch       PetscCall(PetscDrawString(draw, xmin, ymin - .05 * (ymax - ymin), PETSC_DRAW_BLACK, value));
1029566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(value, 16, "%0.2e", xmax));
1039566063dSJacob Faibussowitsch       PetscCall(PetscStrlen(value, &len));
1049566063dSJacob Faibussowitsch       PetscCall(PetscDrawStringGetSize(draw, &w, NULL));
1059566063dSJacob Faibussowitsch       PetscCall(PetscDrawString(draw, xmax - len * w, ymin - .05 * (ymax - ymin), PETSC_DRAW_BLACK, value));
1069566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(value, 16, "%0.2e", ymin));
1079566063dSJacob Faibussowitsch       PetscCall(PetscDrawString(draw, xmin - .05 * (xmax - xmin), ymin, PETSC_DRAW_BLACK, value));
1089566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(value, 16, "%0.2e", ymax));
1099566063dSJacob Faibussowitsch       PetscCall(PetscDrawString(draw, xmin - .05 * (xmax - xmin), ymax, PETSC_DRAW_BLACK, value));
110e5ab1681SLisandro Dalcin     }
111e5ab1681SLisandro Dalcin   }
112d0609cedSBarry Smith   PetscDrawCollectiveEnd(draw);
1133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11447c6ae99SBarry Smith }
11547c6ae99SBarry Smith 
11666976f2fSJacob Faibussowitsch static PetscErrorCode VecView_MPI_Draw_DA2d(Vec xin, PetscViewer viewer)
117d71ae5a4SJacob Faibussowitsch {
1189a42bb27SBarry Smith   DM                  da, dac, dag;
119a74ba6f7SBarry Smith   PetscInt            N, s, M, w, ncoors = 4;
12047c6ae99SBarry Smith   const PetscInt     *lx, *ly;
121e5ab1681SLisandro Dalcin   PetscReal           coors[4];
12247c6ae99SBarry Smith   PetscDraw           draw, popup;
12347c6ae99SBarry Smith   PetscBool           isnull, useports = PETSC_FALSE;
12447c6ae99SBarry Smith   MPI_Comm            comm;
12547c6ae99SBarry Smith   Vec                 xlocal, xcoor, xcoorl;
126bff4a2f0SMatthew G. Knepley   DMBoundaryType      bx, by;
127aa219208SBarry Smith   DMDAStencilType     st;
12847c6ae99SBarry Smith   ZoomCtx             zctx;
1290298fd71SBarry Smith   PetscDrawViewPorts *ports = NULL;
13047c6ae99SBarry Smith   PetscViewerFormat   format;
13120d0051dSBarry Smith   PetscInt           *displayfields;
13267dd0837SBarry Smith   PetscInt            ndisplayfields, i, nbounds;
13367dd0837SBarry Smith   const PetscReal    *bounds;
13447c6ae99SBarry Smith 
13547c6ae99SBarry Smith   PetscFunctionBegin;
13647c6ae99SBarry Smith   zctx.showgrid = PETSC_FALSE;
1377fe7c8feSLisandro Dalcin   zctx.showaxis = PETSC_TRUE;
1388865f1eaSKarl Rupp 
1399566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
1409566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw, &isnull));
1413ba16761SJacob Faibussowitsch   if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
1425b399a63SLisandro Dalcin 
1439566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetBounds(viewer, &nbounds, &bounds));
14447c6ae99SBarry Smith 
1459566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
1467a8be351SBarry Smith   PetscCheck(da, PetscObjectComm((PetscObject)xin), PETSC_ERR_ARG_WRONG, "Vector not generated from a DMDA");
14747c6ae99SBarry Smith 
1489566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)xin, &comm));
1499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &zctx.rank));
15047c6ae99SBarry Smith 
1519566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da, NULL, &M, &N, NULL, &zctx.m, &zctx.n, NULL, &w, &s, &bx, &by, NULL, &st));
1529566063dSJacob Faibussowitsch   PetscCall(DMDAGetOwnershipRanges(da, &lx, &ly, NULL));
15347c6ae99SBarry Smith 
15447c6ae99SBarry Smith   /*
15547c6ae99SBarry Smith      Obtain a sequential vector that is going to contain the local values plus ONE layer of
156aa219208SBarry Smith      ghosted values to draw the graphics from. We also need its corresponding DMDA (dac) that will
157d5b43468SJose E. Roman      update the local values plus ONE layer of ghost values.
15847c6ae99SBarry Smith   */
1599566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "GraphicsGhosted", (PetscObject *)&xlocal));
16047c6ae99SBarry Smith   if (!xlocal) {
161bff4a2f0SMatthew G. Knepley     if (bx != DM_BOUNDARY_NONE || by != DM_BOUNDARY_NONE || s != 1 || st != DMDA_STENCIL_BOX) {
16247c6ae99SBarry Smith       /*
16347c6ae99SBarry Smith          if original da is not of stencil width one, or periodic or not a box stencil then
164aa219208SBarry Smith          create a special DMDA to handle one level of ghost points for graphics
16547c6ae99SBarry Smith       */
1669566063dSJacob Faibussowitsch       PetscCall(DMDACreate2d(comm, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, M, N, zctx.m, zctx.n, w, 1, lx, ly, &dac));
1679566063dSJacob Faibussowitsch       PetscCall(DMSetUp(dac));
1686aad120cSJose E. Roman       PetscCall(PetscInfo(da, "Creating auxiliary DMDA for managing graphics ghost points\n"));
16947c6ae99SBarry Smith     } else {
17047c6ae99SBarry Smith       /* otherwise we can use the da we already have */
17147c6ae99SBarry Smith       dac = da;
17247c6ae99SBarry Smith     }
17347c6ae99SBarry Smith     /* create local vector for holding ghosted values used in graphics */
1749566063dSJacob Faibussowitsch     PetscCall(DMCreateLocalVector(dac, &xlocal));
17547c6ae99SBarry Smith     if (dac != da) {
17615229ffcSPierre Jolivet       /* don't keep any public reference of this DMDA, it is only available through xlocal */
1779566063dSJacob Faibussowitsch       PetscCall(PetscObjectDereference((PetscObject)dac));
17847c6ae99SBarry Smith     } else {
17947c6ae99SBarry Smith       /* remove association between xlocal and da, because below we compose in the opposite
18047c6ae99SBarry Smith          direction and if we left this connect we'd get a loop, so the objects could
18147c6ae99SBarry Smith          never be destroyed */
1829566063dSJacob Faibussowitsch       PetscCall(PetscObjectRemoveReference((PetscObject)xlocal, "__PETSc_dm"));
18347c6ae99SBarry Smith     }
1849566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)da, "GraphicsGhosted", (PetscObject)xlocal));
1859566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)xlocal));
18647c6ae99SBarry Smith   } else {
187bff4a2f0SMatthew G. Knepley     if (bx != DM_BOUNDARY_NONE || by != DM_BOUNDARY_NONE || s != 1 || st != DMDA_STENCIL_BOX) {
1889566063dSJacob Faibussowitsch       PetscCall(VecGetDM(xlocal, &dac));
189f7923d8aSBarry Smith     } else {
190f7923d8aSBarry Smith       dac = da;
19147c6ae99SBarry Smith     }
19247c6ae99SBarry Smith   }
19347c6ae99SBarry Smith 
19447c6ae99SBarry Smith   /*
19547c6ae99SBarry Smith       Get local (ghosted) values of vector
19647c6ae99SBarry Smith   */
1979566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dac, xin, INSERT_VALUES, xlocal));
1989566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dac, xin, INSERT_VALUES, xlocal));
1999566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xlocal, &zctx.v));
20047c6ae99SBarry Smith 
201832b7cebSLisandro Dalcin   /*
202832b7cebSLisandro Dalcin       Get coordinates of nodes
203832b7cebSLisandro Dalcin   */
2049566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinates(da, &xcoor));
20547c6ae99SBarry Smith   if (!xcoor) {
2069566063dSJacob Faibussowitsch     PetscCall(DMDASetUniformCoordinates(da, 0.0, 1.0, 0.0, 1.0, 0.0, 0.0));
2079566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(da, &xcoor));
20847c6ae99SBarry Smith   }
20947c6ae99SBarry Smith 
21047c6ae99SBarry Smith   /*
21147c6ae99SBarry Smith       Determine the min and max coordinates in plot
21247c6ae99SBarry Smith   */
2139566063dSJacob Faibussowitsch   PetscCall(VecStrideMin(xcoor, 0, NULL, &zctx.xmin));
2149566063dSJacob Faibussowitsch   PetscCall(VecStrideMax(xcoor, 0, NULL, &zctx.xmax));
2159566063dSJacob Faibussowitsch   PetscCall(VecStrideMin(xcoor, 1, NULL, &zctx.ymin));
2169566063dSJacob Faibussowitsch   PetscCall(VecStrideMax(xcoor, 1, NULL, &zctx.ymax));
2179566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-draw_contour_axis", &zctx.showaxis, NULL));
2187fe7c8feSLisandro Dalcin   if (zctx.showaxis) {
2199371c9d4SSatish Balay     coors[0] = zctx.xmin - .05 * (zctx.xmax - zctx.xmin);
2209371c9d4SSatish Balay     coors[1] = zctx.ymin - .05 * (zctx.ymax - zctx.ymin);
2219371c9d4SSatish Balay     coors[2] = zctx.xmax + .05 * (zctx.xmax - zctx.xmin);
2229371c9d4SSatish Balay     coors[3] = zctx.ymax + .05 * (zctx.ymax - zctx.ymin);
2237fe7c8feSLisandro Dalcin   } else {
2249371c9d4SSatish Balay     coors[0] = zctx.xmin;
2259371c9d4SSatish Balay     coors[1] = zctx.ymin;
2269371c9d4SSatish Balay     coors[2] = zctx.xmax;
2279371c9d4SSatish Balay     coors[3] = zctx.ymax;
2287fe7c8feSLisandro Dalcin   }
2299566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetRealArray(NULL, NULL, "-draw_coordinates", coors, &ncoors, NULL));
2309566063dSJacob Faibussowitsch   PetscCall(PetscInfo(da, "Preparing DMDA 2d contour plot coordinates %g %g %g %g\n", (double)coors[0], (double)coors[1], (double)coors[2], (double)coors[3]));
231a74ba6f7SBarry Smith 
23247c6ae99SBarry Smith   /*
233832b7cebSLisandro Dalcin       Get local ghosted version of coordinates
23447c6ae99SBarry Smith   */
2359566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)da, "GraphicsCoordinateGhosted", (PetscObject *)&xcoorl));
23647c6ae99SBarry Smith   if (!xcoorl) {
237aa219208SBarry Smith     /* create DMDA to get local version of graphics */
2389566063dSJacob Faibussowitsch     PetscCall(DMDACreate2d(comm, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, M, N, zctx.m, zctx.n, 2, 1, lx, ly, &dag));
2399566063dSJacob Faibussowitsch     PetscCall(DMSetUp(dag));
2406aad120cSJose E. Roman     PetscCall(PetscInfo(dag, "Creating auxiliary DMDA for managing graphics coordinates ghost points\n"));
2419566063dSJacob Faibussowitsch     PetscCall(DMCreateLocalVector(dag, &xcoorl));
2429566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)da, "GraphicsCoordinateGhosted", (PetscObject)xcoorl));
2439566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)dag));
2449566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)xcoorl));
2451baa6e33SBarry Smith   } else PetscCall(VecGetDM(xcoorl, &dag));
2469566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dag, xcoor, INSERT_VALUES, xcoorl));
2479566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dag, xcoor, INSERT_VALUES, xcoorl));
2489566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xcoorl, &zctx.xy));
2499566063dSJacob Faibussowitsch   PetscCall(DMDAGetCoordinateName(da, 0, &zctx.name0));
2509566063dSJacob Faibussowitsch   PetscCall(DMDAGetCoordinateName(da, 1, &zctx.name1));
25147c6ae99SBarry Smith 
25247c6ae99SBarry Smith   /*
25347c6ae99SBarry Smith       Get information about size of area each processor must do graphics for
25447c6ae99SBarry Smith   */
2559566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(dac, NULL, &M, &N, NULL, NULL, NULL, NULL, &zctx.dof, NULL, &bx, &by, NULL, NULL));
2569566063dSJacob Faibussowitsch   PetscCall(DMDAGetGhostCorners(dac, NULL, NULL, NULL, &zctx.m, &zctx.n, NULL));
2579566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-draw_contour_grid", &zctx.showgrid, NULL));
2584e6118eeSBarry Smith 
2599566063dSJacob Faibussowitsch   PetscCall(DMDASelectFields(da, &ndisplayfields, &displayfields));
2609566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer, &format));
2619566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-draw_ports", &useports, NULL));
262832b7cebSLisandro Dalcin   if (format == PETSC_VIEWER_DRAW_PORTS) useports = PETSC_TRUE;
263832b7cebSLisandro Dalcin   if (useports) {
2649566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
2659566063dSJacob Faibussowitsch     PetscCall(PetscDrawCheckResizedWindow(draw));
2669566063dSJacob Faibussowitsch     PetscCall(PetscDrawClear(draw));
2679566063dSJacob Faibussowitsch     PetscCall(PetscDrawViewPortsCreate(draw, ndisplayfields, &ports));
268e5ab1681SLisandro Dalcin   }
26920d0051dSBarry Smith 
270832b7cebSLisandro Dalcin   /*
271832b7cebSLisandro Dalcin       Loop over each field; drawing each in a different window
272832b7cebSLisandro Dalcin   */
27320d0051dSBarry Smith   for (i = 0; i < ndisplayfields; i++) {
27420d0051dSBarry Smith     zctx.k = displayfields[i];
2755b399a63SLisandro Dalcin 
276e5ab1681SLisandro Dalcin     /* determine the min and max value in plot */
2779566063dSJacob Faibussowitsch     PetscCall(VecStrideMin(xin, zctx.k, NULL, &zctx.min));
2789566063dSJacob Faibussowitsch     PetscCall(VecStrideMax(xin, zctx.k, NULL, &zctx.max));
27967dd0837SBarry Smith     if (zctx.k < nbounds) {
280f3f0eb19SBarry Smith       zctx.min = bounds[2 * zctx.k];
281f3f0eb19SBarry Smith       zctx.max = bounds[2 * zctx.k + 1];
28267dd0837SBarry Smith     }
28347c6ae99SBarry Smith     if (zctx.min == zctx.max) {
28447c6ae99SBarry Smith       zctx.min -= 1.e-12;
28547c6ae99SBarry Smith       zctx.max += 1.e-12;
28647c6ae99SBarry Smith     }
2879566063dSJacob Faibussowitsch     PetscCall(PetscInfo(da, "DMDA 2d contour plot min %g max %g\n", (double)zctx.min, (double)zctx.max));
28847c6ae99SBarry Smith 
289832b7cebSLisandro Dalcin     if (useports) {
2909566063dSJacob Faibussowitsch       PetscCall(PetscDrawViewPortsSet(ports, i));
291832b7cebSLisandro Dalcin     } else {
292832b7cebSLisandro Dalcin       const char *title;
2939566063dSJacob Faibussowitsch       PetscCall(PetscViewerDrawGetDraw(viewer, i, &draw));
2949566063dSJacob Faibussowitsch       PetscCall(DMDAGetFieldName(da, zctx.k, &title));
2959566063dSJacob Faibussowitsch       if (title) PetscCall(PetscDrawSetTitle(draw, title));
296832b7cebSLisandro Dalcin     }
297832b7cebSLisandro Dalcin 
2989566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw, &popup));
2999566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup, zctx.min, zctx.max));
3009566063dSJacob Faibussowitsch     PetscCall(PetscDrawSetCoordinates(draw, coors[0], coors[1], coors[2], coors[3]));
3019566063dSJacob Faibussowitsch     PetscCall(PetscDrawZoom(draw, VecView_MPI_Draw_DA2d_Zoom, &zctx));
3029566063dSJacob Faibussowitsch     if (!useports) PetscCall(PetscDrawSave(draw));
30347c6ae99SBarry Smith   }
304832b7cebSLisandro Dalcin   if (useports) {
3059566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
3069566063dSJacob Faibussowitsch     PetscCall(PetscDrawSave(draw));
307832b7cebSLisandro Dalcin   }
308832b7cebSLisandro Dalcin 
3099566063dSJacob Faibussowitsch   PetscCall(PetscDrawViewPortsDestroy(ports));
3109566063dSJacob Faibussowitsch   PetscCall(PetscFree(displayfields));
3119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xcoorl, &zctx.xy));
3129566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xlocal, &zctx.v));
3133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31447c6ae99SBarry Smith }
31547c6ae99SBarry Smith 
3160da24e51SJuha Jäykkä #if defined(PETSC_HAVE_HDF5)
317d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecGetHDF5ChunkSize(DM_DA *da, Vec xin, PetscInt dimension, PetscInt timestep, hsize_t *chunkDims)
318d71ae5a4SJacob Faibussowitsch {
319d4190030SJed Brown   PetscMPIInt comm_size;
320561a82e7SJed Brown   hsize_t     chunk_size, target_size, dim;
321561a82e7SJed Brown   hsize_t     vec_size = sizeof(PetscScalar) * da->M * da->N * da->P * da->w;
322561a82e7SJed Brown   hsize_t     avg_local_vec_size, KiB = 1024, MiB = KiB * KiB, GiB = MiB * KiB, min_size = MiB;
323561a82e7SJed Brown   hsize_t     max_chunks     = 64 * KiB; /* HDF5 internal limitation */
324561a82e7SJed Brown   hsize_t     max_chunk_size = 4 * GiB;  /* HDF5 internal limitation */
32584179ffaSJed Brown   PetscInt    zslices = da->p, yslices = da->n, xslices = da->m;
3260da24e51SJuha Jäykkä 
327cb5c4f94SJuha Jäykkä   PetscFunctionBegin;
3289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)xin), &comm_size));
329faa75363SBarry Smith   avg_local_vec_size = (hsize_t)PetscCeilInt(vec_size, comm_size); /* we will attempt to use this as the chunk size */
3300da24e51SJuha Jäykkä 
331faa75363SBarry Smith   target_size = (hsize_t)PetscMin((PetscInt64)vec_size, PetscMin((PetscInt64)max_chunk_size, PetscMax((PetscInt64)avg_local_vec_size, PetscMax(PetscCeilInt64(vec_size, max_chunks), (PetscInt64)min_size))));
3327d310018SBarry Smith   /* following line uses sizeof(PetscReal) instead of sizeof(PetscScalar) because the last dimension of chunkDims[] captures the 2* when complex numbers are being used */
3337d310018SBarry Smith   chunk_size = (hsize_t)PetscMax(1, chunkDims[0]) * PetscMax(1, chunkDims[1]) * PetscMax(1, chunkDims[2]) * PetscMax(1, chunkDims[3]) * PetscMax(1, chunkDims[4]) * PetscMax(1, chunkDims[5]) * sizeof(PetscReal);
3340da24e51SJuha Jäykkä 
335cb5c4f94SJuha Jäykkä   /*
336cb5c4f94SJuha Jäykkä    if size/rank > max_chunk_size, we need radical measures: even going down to
337cb5c4f94SJuha Jäykkä    avg_local_vec_size is not enough, so we simply use chunk size of 4 GiB no matter
338cb5c4f94SJuha Jäykkä    what, composed in the most efficient way possible.
339cb5c4f94SJuha Jäykkä    N.B. this minimises the number of chunks, which may or may not be the optimal
340cb5c4f94SJuha Jäykkä    solution. In a BG, for example, the optimal solution is probably to make # chunks = #
341cb5c4f94SJuha Jäykkä    IO nodes involved, but this author has no access to a BG to figure out how to
342cb5c4f94SJuha Jäykkä    reliably find the right number. And even then it may or may not be enough.
343cb5c4f94SJuha Jäykkä    */
3440da24e51SJuha Jäykkä   if (avg_local_vec_size > max_chunk_size) {
345cb5c4f94SJuha Jäykkä     /* check if we can just split local z-axis: is that enough? */
346faa75363SBarry Smith     zslices = PetscCeilInt(vec_size, da->p * max_chunk_size) * zslices;
3470da24e51SJuha Jäykkä     if (zslices > da->P) {
348cb5c4f94SJuha Jäykkä       /* lattice is too large in xy-directions, splitting z only is not enough */
3490da24e51SJuha Jäykkä       zslices = da->P;
350faa75363SBarry Smith       yslices = PetscCeilInt(vec_size, zslices * da->n * max_chunk_size) * yslices;
3510da24e51SJuha Jäykkä       if (yslices > da->N) {
352cb5c4f94SJuha Jäykkä         /* lattice is too large in x-direction, splitting along z, y is not enough */
3530da24e51SJuha Jäykkä         yslices = da->N;
354faa75363SBarry Smith         xslices = PetscCeilInt(vec_size, zslices * yslices * da->m * max_chunk_size) * xslices;
3550da24e51SJuha Jäykkä       }
3560da24e51SJuha Jäykkä     }
3570da24e51SJuha Jäykkä     dim = 0;
358ad540459SPierre Jolivet     if (timestep >= 0) ++dim;
359cb5c4f94SJuha Jäykkä     /* prefer to split z-axis, even down to planar slices */
360c73cfb54SMatthew G. Knepley     if (dimension == 3) {
361cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->P / zslices;
362cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->N / yslices;
363cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->M / xslices;
3640da24e51SJuha Jäykkä     } else {
365cb5c4f94SJuha Jäykkä       /* This is a 2D world exceeding 4GiB in size; yes, I've seen them, even used myself */
366cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->N / yslices;
367cb5c4f94SJuha Jäykkä       chunkDims[dim++] = (hsize_t)da->M / xslices;
3680da24e51SJuha Jäykkä     }
3690da24e51SJuha Jäykkä     chunk_size = (hsize_t)PetscMax(1, chunkDims[0]) * PetscMax(1, chunkDims[1]) * PetscMax(1, chunkDims[2]) * PetscMax(1, chunkDims[3]) * PetscMax(1, chunkDims[4]) * PetscMax(1, chunkDims[5]) * sizeof(double);
3700da24e51SJuha Jäykkä   } else {
3710da24e51SJuha Jäykkä     if (target_size < chunk_size) {
372cb5c4f94SJuha Jäykkä       /* only change the defaults if target_size < chunk_size */
3730da24e51SJuha Jäykkä       dim = 0;
374ad540459SPierre Jolivet       if (timestep >= 0) ++dim;
375cb5c4f94SJuha Jäykkä       /* prefer to split z-axis, even down to planar slices */
376c73cfb54SMatthew G. Knepley       if (dimension == 3) {
377cb5c4f94SJuha Jäykkä         /* try splitting the z-axis to core-size bits, i.e. divide chunk size by # comm_size in z-direction */
3780da24e51SJuha Jäykkä         if (target_size >= chunk_size / da->p) {
379cb5c4f94SJuha Jäykkä           /* just make chunks the size of <local_z>x<whole_world_y>x<whole_world_x>x<dof> */
380faa75363SBarry Smith           chunkDims[dim] = (hsize_t)PetscCeilInt(da->P, da->p);
3810da24e51SJuha Jäykkä         } else {
382cb5c4f94SJuha Jäykkä           /* oops, just splitting the z-axis is NOT ENOUGH, need to split more; let's be
383cb5c4f94SJuha Jäykkä            radical and let everyone write all they've got */
384faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->P, da->p);
385faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->N, da->n);
386faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->M, da->m);
3870da24e51SJuha Jäykkä         }
3880da24e51SJuha Jäykkä       } else {
389cb5c4f94SJuha Jäykkä         /* This is a 2D world exceeding 4GiB in size; yes, I've seen them, even used myself */
3900da24e51SJuha Jäykkä         if (target_size >= chunk_size / da->n) {
391cb5c4f94SJuha Jäykkä           /* just make chunks the size of <local_z>x<whole_world_y>x<whole_world_x>x<dof> */
392faa75363SBarry Smith           chunkDims[dim] = (hsize_t)PetscCeilInt(da->N, da->n);
3930da24e51SJuha Jäykkä         } else {
394cb5c4f94SJuha Jäykkä           /* oops, just splitting the z-axis is NOT ENOUGH, need to split more; let's be
395cb5c4f94SJuha Jäykkä            radical and let everyone write all they've got */
396faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->N, da->n);
397faa75363SBarry Smith           chunkDims[dim++] = (hsize_t)PetscCeilInt(da->M, da->m);
3980da24e51SJuha Jäykkä         }
3990da24e51SJuha Jäykkä       }
4000da24e51SJuha Jäykkä       chunk_size = (hsize_t)PetscMax(1, chunkDims[0]) * PetscMax(1, chunkDims[1]) * PetscMax(1, chunkDims[2]) * PetscMax(1, chunkDims[3]) * PetscMax(1, chunkDims[4]) * PetscMax(1, chunkDims[5]) * sizeof(double);
4010da24e51SJuha Jäykkä     } else {
402cb5c4f94SJuha Jäykkä       /* precomputed chunks are fine, we don't need to do anything */
4030da24e51SJuha Jäykkä     }
4040da24e51SJuha Jäykkä   }
4053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4060da24e51SJuha Jäykkä }
4070da24e51SJuha Jäykkä #endif
40847c6ae99SBarry Smith 
40947c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
41066976f2fSJacob Faibussowitsch static PetscErrorCode VecView_MPI_HDF5_DA(Vec xin, PetscViewer viewer)
411d71ae5a4SJacob Faibussowitsch {
4122d95be3dSVaclav Hapla   PetscViewer_HDF5  *hdf5 = (PetscViewer_HDF5 *)viewer->data;
4139b2a5a86SJed Brown   DM                 dm;
4149b2a5a86SJed Brown   DM_DA             *da;
41547c6ae99SBarry Smith   hid_t              filespace;  /* file dataspace identifier */
4168e2ae6d7SMichael Kraus   hid_t              chunkspace; /* chunk dataset property identifier */
41747c6ae99SBarry Smith   hid_t              dset_id;    /* dataset identifier */
41847c6ae99SBarry Smith   hid_t              memspace;   /* memory dataspace identifier */
41947c6ae99SBarry Smith   hid_t              file_id;
42015214e8eSMatthew G Knepley   hid_t              group;
4219a0502c6SHåkon Strandenes   hid_t              memscalartype;  /* scalar type for mem (H5T_NATIVE_FLOAT or H5T_NATIVE_DOUBLE) */
4229a0502c6SHåkon Strandenes   hid_t              filescalartype; /* scalar type for file (H5T_NATIVE_FLOAT or H5T_NATIVE_DOUBLE) */
423d9a4edebSJed Brown   hsize_t            dim;
4240da24e51SJuha Jäykkä   hsize_t            maxDims[6] = {0}, dims[6] = {0}, chunkDims[6] = {0}, count[6] = {0}, offset[6] = {0}; /* we depend on these being sane later on  */
425d7dd068bSVaclav Hapla   PetscBool          timestepping = PETSC_FALSE, dim2, spoutput;
426*1690c2aeSBarry Smith   PetscInt           timestep     = PETSC_INT_MIN, dimension;
4275edff71fSBarry Smith   const PetscScalar *x;
4288e2ae6d7SMichael Kraus   const char        *vecname;
42947c6ae99SBarry Smith 
43047c6ae99SBarry Smith   PetscFunctionBegin;
4313014b61aSVaclav Hapla   PetscCall(PetscViewerHDF5OpenGroup(viewer, NULL, &file_id, &group));
4329566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5IsTimestepping(viewer, &timestepping));
43348a46eb9SPierre Jolivet   if (timestepping) PetscCall(PetscViewerHDF5GetTimestep(viewer, &timestep));
4349566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5GetBaseDimension2(viewer, &dim2));
4359566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5GetSPOutput(viewer, &spoutput));
43615214e8eSMatthew G Knepley 
4379566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &dm));
4387a8be351SBarry Smith   PetscCheck(dm, PetscObjectComm((PetscObject)xin), PETSC_ERR_ARG_WRONG, "Vector not generated from a DMDA");
4399b2a5a86SJed Brown   da = (DM_DA *)dm->data;
4409566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dimension));
44147c6ae99SBarry Smith 
4428e2ae6d7SMichael Kraus   /* Create the dataspace for the dataset.
4438e2ae6d7SMichael Kraus    *
4448e2ae6d7SMichael Kraus    * dims - holds the current dimensions of the dataset
4458e2ae6d7SMichael Kraus    *
4468e2ae6d7SMichael Kraus    * maxDims - holds the maximum dimensions of the dataset (unlimited
4478e2ae6d7SMichael Kraus    * for the number of time steps with the current dimensions for the
4488e2ae6d7SMichael Kraus    * other dimensions; so only additional time steps can be added).
4498e2ae6d7SMichael Kraus    *
4508e2ae6d7SMichael Kraus    * chunkDims - holds the size of a single time step (required to
4518e2ae6d7SMichael Kraus    * permit extending dataset).
4528e2ae6d7SMichael Kraus    */
4538e2ae6d7SMichael Kraus   dim = 0;
4548e2ae6d7SMichael Kraus   if (timestep >= 0) {
4558e2ae6d7SMichael Kraus     dims[dim]      = timestep + 1;
4568e2ae6d7SMichael Kraus     maxDims[dim]   = H5S_UNLIMITED;
4578e2ae6d7SMichael Kraus     chunkDims[dim] = 1;
4588e2ae6d7SMichael Kraus     ++dim;
4598e2ae6d7SMichael Kraus   }
460c73cfb54SMatthew G. Knepley   if (dimension == 3) {
4619566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(da->P, dims + dim));
4628e2ae6d7SMichael Kraus     maxDims[dim]   = dims[dim];
4638e2ae6d7SMichael Kraus     chunkDims[dim] = dims[dim];
4648e2ae6d7SMichael Kraus     ++dim;
4658e2ae6d7SMichael Kraus   }
466c73cfb54SMatthew G. Knepley   if (dimension > 1) {
4679566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(da->N, dims + dim));
4688e2ae6d7SMichael Kraus     maxDims[dim]   = dims[dim];
4698e2ae6d7SMichael Kraus     chunkDims[dim] = dims[dim];
4708e2ae6d7SMichael Kraus     ++dim;
4718e2ae6d7SMichael Kraus   }
4729566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast(da->M, dims + dim));
4738e2ae6d7SMichael Kraus   maxDims[dim]   = dims[dim];
4748e2ae6d7SMichael Kraus   chunkDims[dim] = dims[dim];
4758e2ae6d7SMichael Kraus   ++dim;
47682ea9b62SBarry Smith   if (da->w > 1 || dim2) {
4779566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(da->w, dims + dim));
4788e2ae6d7SMichael Kraus     maxDims[dim]   = dims[dim];
4798e2ae6d7SMichael Kraus     chunkDims[dim] = dims[dim];
4808e2ae6d7SMichael Kraus     ++dim;
4818e2ae6d7SMichael Kraus   }
48247c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
4838e2ae6d7SMichael Kraus   dims[dim]      = 2;
4848e2ae6d7SMichael Kraus   maxDims[dim]   = dims[dim];
4858e2ae6d7SMichael Kraus   chunkDims[dim] = dims[dim];
4868e2ae6d7SMichael Kraus   ++dim;
48747c6ae99SBarry Smith   #endif
4880da24e51SJuha Jäykkä 
4899566063dSJacob Faibussowitsch   PetscCall(VecGetHDF5ChunkSize(da, xin, dimension, timestep, chunkDims));
4900da24e51SJuha Jäykkä 
4916497c311SBarry Smith   PetscCallHDF5Return(filespace, H5Screate_simple, ((int)dim, dims, maxDims));
49247c6ae99SBarry Smith 
49315214e8eSMatthew G Knepley   #if defined(PETSC_USE_REAL_SINGLE)
4949a0502c6SHåkon Strandenes   memscalartype  = H5T_NATIVE_FLOAT;
4959a0502c6SHåkon Strandenes   filescalartype = H5T_NATIVE_FLOAT;
49615214e8eSMatthew G Knepley   #elif defined(PETSC_USE_REAL___FLOAT128)
49715214e8eSMatthew G Knepley     #error "HDF5 output with 128 bit floats not supported."
498570b7f6dSBarry Smith   #elif defined(PETSC_USE_REAL___FP16)
499570b7f6dSBarry Smith     #error "HDF5 output with 16 bit floats not supported."
50015214e8eSMatthew G Knepley   #else
5019a0502c6SHåkon Strandenes   memscalartype = H5T_NATIVE_DOUBLE;
5029a0502c6SHåkon Strandenes   if (spoutput == PETSC_TRUE) filescalartype = H5T_NATIVE_FLOAT;
5039a0502c6SHåkon Strandenes   else filescalartype = H5T_NATIVE_DOUBLE;
50415214e8eSMatthew G Knepley   #endif
50515214e8eSMatthew G Knepley 
50647c6ae99SBarry Smith   /* Create the dataset with default properties and close filespace */
5079566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)xin, &vecname));
50815214e8eSMatthew G Knepley   if (!H5Lexists(group, vecname, H5P_DEFAULT)) {
5098e2ae6d7SMichael Kraus     /* Create chunk */
510792fecdfSBarry Smith     PetscCallHDF5Return(chunkspace, H5Pcreate, (H5P_DATASET_CREATE));
5116497c311SBarry Smith     PetscCallHDF5(H5Pset_chunk, (chunkspace, (int)dim, chunkDims));
5128e2ae6d7SMichael Kraus 
513792fecdfSBarry Smith     PetscCallHDF5Return(dset_id, H5Dcreate2, (group, vecname, filescalartype, filespace, H5P_DEFAULT, chunkspace, H5P_DEFAULT));
51415214e8eSMatthew G Knepley   } else {
515792fecdfSBarry Smith     PetscCallHDF5Return(dset_id, H5Dopen2, (group, vecname, H5P_DEFAULT));
516792fecdfSBarry Smith     PetscCallHDF5(H5Dset_extent, (dset_id, dims));
51715214e8eSMatthew G Knepley   }
518792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (filespace));
51947c6ae99SBarry Smith 
52047c6ae99SBarry Smith   /* Each process defines a dataset and writes it to the hyperslab in the file */
5218e2ae6d7SMichael Kraus   dim = 0;
5228e2ae6d7SMichael Kraus   if (timestep >= 0) {
5238e2ae6d7SMichael Kraus     offset[dim] = timestep;
5248e2ae6d7SMichael Kraus     ++dim;
5258e2ae6d7SMichael Kraus   }
5269566063dSJacob Faibussowitsch   if (dimension == 3) PetscCall(PetscHDF5IntCast(da->zs, offset + dim++));
5279566063dSJacob Faibussowitsch   if (dimension > 1) PetscCall(PetscHDF5IntCast(da->ys, offset + dim++));
5289566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast(da->xs / da->w, offset + dim++));
52982ea9b62SBarry Smith   if (da->w > 1 || dim2) offset[dim++] = 0;
53047c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
5318e2ae6d7SMichael Kraus   offset[dim++] = 0;
53247c6ae99SBarry Smith   #endif
5338e2ae6d7SMichael Kraus   dim = 0;
5348e2ae6d7SMichael Kraus   if (timestep >= 0) {
5358e2ae6d7SMichael Kraus     count[dim] = 1;
5368e2ae6d7SMichael Kraus     ++dim;
5378e2ae6d7SMichael Kraus   }
5389566063dSJacob Faibussowitsch   if (dimension == 3) PetscCall(PetscHDF5IntCast(da->ze - da->zs, count + dim++));
5399566063dSJacob Faibussowitsch   if (dimension > 1) PetscCall(PetscHDF5IntCast(da->ye - da->ys, count + dim++));
5409566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast((da->xe - da->xs) / da->w, count + dim++));
5419566063dSJacob Faibussowitsch   if (da->w > 1 || dim2) PetscCall(PetscHDF5IntCast(da->w, count + dim++));
54247c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
5438e2ae6d7SMichael Kraus   count[dim++] = 2;
54447c6ae99SBarry Smith   #endif
5456497c311SBarry Smith   PetscCallHDF5Return(memspace, H5Screate_simple, ((int)dim, count, NULL));
546792fecdfSBarry Smith   PetscCallHDF5Return(filespace, H5Dget_space, (dset_id));
547792fecdfSBarry Smith   PetscCallHDF5(H5Sselect_hyperslab, (filespace, H5S_SELECT_SET, offset, NULL, count, NULL));
54847c6ae99SBarry Smith 
5499566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xin, &x));
550792fecdfSBarry Smith   PetscCallHDF5(H5Dwrite, (dset_id, memscalartype, memspace, filespace, hdf5->dxpl_id, x));
551792fecdfSBarry Smith   PetscCallHDF5(H5Fflush, (file_id, H5F_SCOPE_GLOBAL));
5529566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xin, &x));
55347c6ae99SBarry Smith 
554e0552f36Ssajid__ali   #if defined(PETSC_USE_COMPLEX)
555e0552f36Ssajid__ali   {
556e0552f36Ssajid__ali     PetscBool tru = PETSC_TRUE;
5579566063dSJacob Faibussowitsch     PetscCall(PetscViewerHDF5WriteObjectAttribute(viewer, (PetscObject)xin, "complex", PETSC_BOOL, &tru));
558e0552f36Ssajid__ali   }
559e0552f36Ssajid__ali   #endif
56048a46eb9SPierre Jolivet   if (timestepping) PetscCall(PetscViewerHDF5WriteObjectAttribute(viewer, (PetscObject)xin, "timestepping", PETSC_BOOL, &timestepping));
561e0552f36Ssajid__ali 
56247c6ae99SBarry Smith   /* Close/release resources */
563ad540459SPierre Jolivet   if (group != file_id) PetscCallHDF5(H5Gclose, (group));
564792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (filespace));
565792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (memspace));
566792fecdfSBarry Smith   PetscCallHDF5(H5Dclose, (dset_id));
5679566063dSJacob Faibussowitsch   PetscCall(PetscInfo(xin, "Wrote Vec object with name %s\n", vecname));
5683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56947c6ae99SBarry Smith }
57047c6ae99SBarry Smith #endif
57147c6ae99SBarry Smith 
57209573ac7SBarry Smith extern PetscErrorCode VecView_MPI_Draw_DA1d(Vec, PetscViewer);
57347c6ae99SBarry Smith 
57447c6ae99SBarry Smith #if defined(PETSC_HAVE_MPIIO)
575d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDAArrayMPIIO(DM da, PetscViewer viewer, Vec xin, PetscBool write)
576d71ae5a4SJacob Faibussowitsch {
57747c6ae99SBarry Smith   MPI_File           mfdes;
57847c6ae99SBarry Smith   PetscMPIInt        gsizes[4], lsizes[4], lstarts[4], asiz, dof;
57947c6ae99SBarry Smith   MPI_Datatype       view;
58047c6ae99SBarry Smith   const PetscScalar *array;
58147c6ae99SBarry Smith   MPI_Offset         off;
58247c6ae99SBarry Smith   MPI_Aint           ub, ul;
58347c6ae99SBarry Smith   PetscInt           type, rows, vecrows, tr[2];
58447c6ae99SBarry Smith   DM_DA             *dd = (DM_DA *)da->data;
5850c169764Sdmay   PetscBool          skipheader;
58647c6ae99SBarry Smith 
58747c6ae99SBarry Smith   PetscFunctionBegin;
5889566063dSJacob Faibussowitsch   PetscCall(VecGetSize(xin, &vecrows));
5899566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetSkipHeader(viewer, &skipheader));
59047c6ae99SBarry Smith   if (!write) {
59147c6ae99SBarry Smith     /* Read vector header. */
5920c169764Sdmay     if (!skipheader) {
5939566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryRead(viewer, tr, 2, NULL, PETSC_INT));
59447c6ae99SBarry Smith       type = tr[0];
59547c6ae99SBarry Smith       rows = tr[1];
59608401ef6SPierre Jolivet       PetscCheck(type == VEC_FILE_CLASSID, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_WRONG, "Not vector next in file");
59708401ef6SPierre Jolivet       PetscCheck(rows == vecrows, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_SIZ, "Vector in file not same size as DMDA vector");
5980c169764Sdmay     }
59947c6ae99SBarry Smith   } else {
60047c6ae99SBarry Smith     tr[0] = VEC_FILE_CLASSID;
60147c6ae99SBarry Smith     tr[1] = vecrows;
60248a46eb9SPierre Jolivet     if (!skipheader) PetscCall(PetscViewerBinaryWrite(viewer, tr, 2, PETSC_INT));
6030c169764Sdmay   }
60447c6ae99SBarry Smith 
6059566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->w, &dof));
6064dc2109aSBarry Smith   gsizes[0] = dof;
6079566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->M, gsizes + 1));
6089566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->N, gsizes + 2));
6099566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->P, gsizes + 3));
6104dc2109aSBarry Smith   lsizes[0] = dof;
6119566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast((dd->xe - dd->xs) / dof, lsizes + 1));
6129566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->ye - dd->ys, lsizes + 2));
6139566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->ze - dd->zs, lsizes + 3));
6144dc2109aSBarry Smith   lstarts[0] = 0;
6159566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->xs / dof, lstarts + 1));
6169566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->ys, lstarts + 2));
6179566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(dd->zs, lstarts + 3));
6186497c311SBarry Smith   PetscCallMPI(MPI_Type_create_subarray((PetscMPIInt)(da->dim + 1), gsizes, lsizes, lstarts, MPI_ORDER_FORTRAN, MPIU_SCALAR, &view));
6199566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&view));
62047c6ae99SBarry Smith 
6219566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetMPIIODescriptor(viewer, &mfdes));
6229566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetMPIIOOffset(viewer, &off));
6239566063dSJacob Faibussowitsch   PetscCallMPI(MPI_File_set_view(mfdes, off, MPIU_SCALAR, view, (char *)"native", MPI_INFO_NULL));
6249566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(xin, &array));
62547c6ae99SBarry Smith   asiz = lsizes[1] * (lsizes[2] > 0 ? lsizes[2] : 1) * (lsizes[3] > 0 ? lsizes[3] : 1) * dof;
6261baa6e33SBarry Smith   if (write) PetscCall(MPIU_File_write_all(mfdes, (PetscScalar *)array, asiz, MPIU_SCALAR, MPI_STATUS_IGNORE));
6271baa6e33SBarry Smith   else PetscCall(MPIU_File_read_all(mfdes, (PetscScalar *)array, asiz, MPIU_SCALAR, MPI_STATUS_IGNORE));
6289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_get_extent(view, &ul, &ub));
6299566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryAddMPIIOOffset(viewer, ub));
6309566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(xin, &array));
6319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&view));
6323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
63347c6ae99SBarry Smith }
63447c6ae99SBarry Smith #endif
63547c6ae99SBarry Smith 
636d71ae5a4SJacob Faibussowitsch PetscErrorCode VecView_MPI_DA(Vec xin, PetscViewer viewer)
637d71ae5a4SJacob Faibussowitsch {
6389a42bb27SBarry Smith   DM        da;
63947c6ae99SBarry Smith   PetscInt  dim;
64047c6ae99SBarry Smith   Vec       natural;
6418135c375SStefano Zampini   PetscBool isdraw, isvtk, isglvis;
64247c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
64347c6ae99SBarry Smith   PetscBool ishdf5;
64447c6ae99SBarry Smith #endif
6453f3fd955SJed Brown   const char       *prefix, *name;
646a261c58fSBarry Smith   PetscViewerFormat format;
64747c6ae99SBarry Smith 
64847c6ae99SBarry Smith   PetscFunctionBegin;
6499566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
6507a8be351SBarry Smith   PetscCheck(da, PetscObjectComm((PetscObject)xin), PETSC_ERR_ARG_WRONG, "Vector not generated from a DMDA");
6519566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
6529566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERVTK, &isvtk));
65347c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
6549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
65547c6ae99SBarry Smith #endif
6569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERGLVIS, &isglvis));
65747c6ae99SBarry Smith   if (isdraw) {
6589566063dSJacob Faibussowitsch     PetscCall(DMDAGetInfo(da, &dim, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL));
65947c6ae99SBarry Smith     if (dim == 1) {
6609566063dSJacob Faibussowitsch       PetscCall(VecView_MPI_Draw_DA1d(xin, viewer));
66147c6ae99SBarry Smith     } else if (dim == 2) {
6629566063dSJacob Faibussowitsch       PetscCall(VecView_MPI_Draw_DA2d(xin, viewer));
66363a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)da), PETSC_ERR_SUP, "Cannot graphically view vector associated with this dimensional DMDA %" PetscInt_FMT, dim);
66401d7c5c3SPatrick Sanan   } else if (isvtk) { /* Duplicate the Vec */
6654061b8bfSJed Brown     Vec Y;
6669566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(xin, &Y));
667b51b94faSJed Brown     if (((PetscObject)xin)->name) {
668b51b94faSJed Brown       /* If xin was named, copy the name over to Y. The duplicate names are safe because nobody else will ever see Y. */
6699566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)Y, ((PetscObject)xin)->name));
670b51b94faSJed Brown     }
6719566063dSJacob Faibussowitsch     PetscCall(VecCopy(xin, Y));
672a8f87f1dSPatrick Sanan     {
673a8f87f1dSPatrick Sanan       PetscObject dmvtk;
674a8f87f1dSPatrick Sanan       PetscBool   compatible, compatibleSet;
6759566063dSJacob Faibussowitsch       PetscCall(PetscViewerVTKGetDM(viewer, &dmvtk));
676a8f87f1dSPatrick Sanan       if (dmvtk) {
677064a246eSJacob Faibussowitsch         PetscValidHeaderSpecific((DM)dmvtk, DM_CLASSID, 2);
6789566063dSJacob Faibussowitsch         PetscCall(DMGetCompatibility(da, (DM)dmvtk, &compatible, &compatibleSet));
6797a8be351SBarry Smith         PetscCheck(compatibleSet && compatible, PetscObjectComm((PetscObject)da), PETSC_ERR_ARG_INCOMP, "Cannot confirm compatibility of DMs associated with Vecs viewed in the same VTK file. Check that grids are the same.");
680a8f87f1dSPatrick Sanan       }
6819566063dSJacob Faibussowitsch       PetscCall(PetscViewerVTKAddField(viewer, (PetscObject)da, DMDAVTKWriteAll, PETSC_DEFAULT, PETSC_VTK_POINT_FIELD, PETSC_FALSE, (PetscObject)Y));
682a8f87f1dSPatrick Sanan     }
68347c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
68447c6ae99SBarry Smith   } else if (ishdf5) {
6859566063dSJacob Faibussowitsch     PetscCall(VecView_MPI_HDF5_DA(xin, viewer));
68647c6ae99SBarry Smith #endif
6878135c375SStefano Zampini   } else if (isglvis) {
6889566063dSJacob Faibussowitsch     PetscCall(VecView_GLVis(xin, viewer));
68947c6ae99SBarry Smith   } else {
69047c6ae99SBarry Smith #if defined(PETSC_HAVE_MPIIO)
69147c6ae99SBarry Smith     PetscBool isbinary, isMPIIO;
69247c6ae99SBarry Smith 
6939566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
69447c6ae99SBarry Smith     if (isbinary) {
6959566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryGetUseMPIIO(viewer, &isMPIIO));
69647c6ae99SBarry Smith       if (isMPIIO) {
6979566063dSJacob Faibussowitsch         PetscCall(DMDAArrayMPIIO(da, viewer, xin, PETSC_TRUE));
6983ba16761SJacob Faibussowitsch         PetscFunctionReturn(PETSC_SUCCESS);
69947c6ae99SBarry Smith       }
70047c6ae99SBarry Smith     }
70147c6ae99SBarry Smith #endif
70247c6ae99SBarry Smith 
70347c6ae99SBarry Smith     /* call viewer on natural ordering */
7049566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetOptionsPrefix((PetscObject)xin, &prefix));
7059566063dSJacob Faibussowitsch     PetscCall(DMDACreateNaturalVector(da, &natural));
7069566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)natural, prefix));
7079566063dSJacob Faibussowitsch     PetscCall(DMDAGlobalToNaturalBegin(da, xin, INSERT_VALUES, natural));
7089566063dSJacob Faibussowitsch     PetscCall(DMDAGlobalToNaturalEnd(da, xin, INSERT_VALUES, natural));
7099566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)xin, &name));
7109566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)natural, name));
711a261c58fSBarry Smith 
7129566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
713a261c58fSBarry Smith     if (format == PETSC_VIEWER_BINARY_MATLAB) {
714a261c58fSBarry Smith       /* temporarily remove viewer format so it won't trigger in the VecView() */
7159566063dSJacob Faibussowitsch       PetscCall(PetscViewerPushFormat(viewer, PETSC_VIEWER_DEFAULT));
716a261c58fSBarry Smith     }
717a261c58fSBarry Smith 
71823f88b65SBarry Smith     ((PetscObject)natural)->donotPetscObjectPrintClassNamePrefixType = PETSC_TRUE;
7199566063dSJacob Faibussowitsch     PetscCall(VecView(natural, viewer));
72023f88b65SBarry Smith     ((PetscObject)natural)->donotPetscObjectPrintClassNamePrefixType = PETSC_FALSE;
721a261c58fSBarry Smith 
722a261c58fSBarry Smith     if (format == PETSC_VIEWER_BINARY_MATLAB) {
723a261c58fSBarry Smith       MPI_Comm    comm;
724a261c58fSBarry Smith       FILE       *info;
725a261c58fSBarry Smith       const char *fieldname;
726da88d4d4SJed Brown       char        fieldbuf[256];
727a261c58fSBarry Smith       PetscInt    dim, ni, nj, nk, pi, pj, pk, dof, n;
728a261c58fSBarry Smith 
729a261c58fSBarry Smith       /* set the viewer format back into the viewer */
7309566063dSJacob Faibussowitsch       PetscCall(PetscViewerPopFormat(viewer));
7319566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetComm((PetscObject)viewer, &comm));
7329566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryGetInfoPointer(viewer, &info));
7339566063dSJacob Faibussowitsch       PetscCall(DMDAGetInfo(da, &dim, &ni, &nj, &nk, &pi, &pj, &pk, &dof, NULL, NULL, NULL, NULL, NULL));
7349566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#--- begin code written by PetscViewerBinary for MATLAB format ---#\n"));
7359566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#$$ tmp = PetscBinaryRead(fd); \n"));
73648a46eb9SPierre Jolivet       if (dim == 1) PetscCall(PetscFPrintf(comm, info, "#$$ tmp = reshape(tmp,%" PetscInt_FMT ",%" PetscInt_FMT ");\n", dof, ni));
73748a46eb9SPierre Jolivet       if (dim == 2) PetscCall(PetscFPrintf(comm, info, "#$$ tmp = reshape(tmp,%" PetscInt_FMT ",%" PetscInt_FMT ",%" PetscInt_FMT ");\n", dof, ni, nj));
73848a46eb9SPierre Jolivet       if (dim == 3) PetscCall(PetscFPrintf(comm, info, "#$$ tmp = reshape(tmp,%" PetscInt_FMT ",%" PetscInt_FMT ",%" PetscInt_FMT ",%" PetscInt_FMT ");\n", dof, ni, nj, nk));
739a261c58fSBarry Smith 
740a261c58fSBarry Smith       for (n = 0; n < dof; n++) {
7419566063dSJacob Faibussowitsch         PetscCall(DMDAGetFieldName(da, n, &fieldname));
742da88d4d4SJed Brown         if (!fieldname || !fieldname[0]) {
74363a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(fieldbuf, sizeof fieldbuf, "field%" PetscInt_FMT, n));
744da88d4d4SJed Brown           fieldname = fieldbuf;
745a261c58fSBarry Smith         }
74648a46eb9SPierre Jolivet         if (dim == 1) PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s.%s = squeeze(tmp(%" PetscInt_FMT ",:))';\n", name, fieldname, n + 1));
74748a46eb9SPierre Jolivet         if (dim == 2) PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s.%s = squeeze(tmp(%" PetscInt_FMT ",:,:))';\n", name, fieldname, n + 1));
74848a46eb9SPierre Jolivet         if (dim == 3) PetscCall(PetscFPrintf(comm, info, "#$$ Set.%s.%s = permute(squeeze(tmp(%" PetscInt_FMT ",:,:,:)),[2 1 3]);\n", name, fieldname, n + 1));
749a261c58fSBarry Smith       }
7509566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#$$ clear tmp; \n"));
7519566063dSJacob Faibussowitsch       PetscCall(PetscFPrintf(comm, info, "#--- end code written by PetscViewerBinary for MATLAB format ---#\n\n"));
752a261c58fSBarry Smith     }
753a261c58fSBarry Smith 
7549566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&natural));
75547c6ae99SBarry Smith   }
7563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
75747c6ae99SBarry Smith }
75847c6ae99SBarry Smith 
75947c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
76066976f2fSJacob Faibussowitsch static PetscErrorCode VecLoad_HDF5_DA(Vec xin, PetscViewer viewer)
761d71ae5a4SJacob Faibussowitsch {
7622d95be3dSVaclav Hapla   PetscViewer_HDF5 *hdf5 = (PetscViewer_HDF5 *)viewer->data;
7639a42bb27SBarry Smith   DM                da;
76415b861d2SVaclav Hapla   int               dim, rdim;
765ec7ae49cSHåkon Strandenes   hsize_t           dims[6] = {0}, count[6] = {0}, offset[6] = {0};
766d7dd068bSVaclav Hapla   PetscBool         dim2 = PETSC_FALSE, timestepping = PETSC_FALSE;
767*1690c2aeSBarry Smith   PetscInt          dimension, timestep              = PETSC_INT_MIN, dofInd;
76847c6ae99SBarry Smith   PetscScalar      *x;
76947c6ae99SBarry Smith   const char       *vecname;
77047c6ae99SBarry Smith   hid_t             filespace; /* file dataspace identifier */
77147c6ae99SBarry Smith   hid_t             dset_id;   /* dataset identifier */
77247c6ae99SBarry Smith   hid_t             memspace;  /* memory dataspace identifier */
773bfd264e7SBarry Smith   hid_t             file_id, group;
7747bcbaff4SBarry Smith   hid_t             scalartype; /* scalar type (H5T_NATIVE_FLOAT or H5T_NATIVE_DOUBLE) */
7759c7c4993SBarry Smith   DM_DA            *dd;
77647c6ae99SBarry Smith 
77747c6ae99SBarry Smith   PetscFunctionBegin;
7787bcbaff4SBarry Smith   #if defined(PETSC_USE_REAL_SINGLE)
7797bcbaff4SBarry Smith   scalartype = H5T_NATIVE_FLOAT;
7807bcbaff4SBarry Smith   #elif defined(PETSC_USE_REAL___FLOAT128)
7817bcbaff4SBarry Smith     #error "HDF5 output with 128 bit floats not supported."
782570b7f6dSBarry Smith   #elif defined(PETSC_USE_REAL___FP16)
783570b7f6dSBarry Smith     #error "HDF5 output with 16 bit floats not supported."
7847bcbaff4SBarry Smith   #else
7857bcbaff4SBarry Smith   scalartype = H5T_NATIVE_DOUBLE;
7867bcbaff4SBarry Smith   #endif
7877bcbaff4SBarry Smith 
7883014b61aSVaclav Hapla   PetscCall(PetscViewerHDF5OpenGroup(viewer, NULL, &file_id, &group));
7899566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)xin, &vecname));
7909566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5CheckTimestepping_Internal(viewer, vecname));
7919566063dSJacob Faibussowitsch   PetscCall(PetscViewerHDF5IsTimestepping(viewer, &timestepping));
79248a46eb9SPierre Jolivet   if (timestepping) PetscCall(PetscViewerHDF5GetTimestep(viewer, &timestep));
7939566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
7949c7c4993SBarry Smith   dd = (DM_DA *)da->data;
7959566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(da, &dimension));
79647c6ae99SBarry Smith 
797ec7ae49cSHåkon Strandenes   /* Open dataset */
798792fecdfSBarry Smith   PetscCallHDF5Return(dset_id, H5Dopen2, (group, vecname, H5P_DEFAULT));
79947c6ae99SBarry Smith 
800ec7ae49cSHåkon Strandenes   /* Retrieve the dataspace for the dataset */
801792fecdfSBarry Smith   PetscCallHDF5Return(filespace, H5Dget_space, (dset_id));
802792fecdfSBarry Smith   PetscCallHDF5Return(rdim, H5Sget_simple_extent_dims, (filespace, dims, NULL));
803ec7ae49cSHåkon Strandenes 
804ec7ae49cSHåkon Strandenes   /* Expected dimension for holding the dof's */
80547c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
806ec7ae49cSHåkon Strandenes   dofInd = rdim - 2;
807ec7ae49cSHåkon Strandenes   #else
808ec7ae49cSHåkon Strandenes   dofInd = rdim - 1;
80947c6ae99SBarry Smith   #endif
810ec7ae49cSHåkon Strandenes 
811ec7ae49cSHåkon Strandenes   /* The expected number of dimensions, assuming basedimension2 = false */
812ec7ae49cSHåkon Strandenes   dim = dimension;
813ec7ae49cSHåkon Strandenes   if (dd->w > 1) ++dim;
814ec7ae49cSHåkon Strandenes   if (timestep >= 0) ++dim;
81547c6ae99SBarry Smith   #if defined(PETSC_USE_COMPLEX)
816ec7ae49cSHåkon Strandenes   ++dim;
81747c6ae99SBarry Smith   #endif
818ec7ae49cSHåkon Strandenes 
819ec7ae49cSHåkon Strandenes   /* In this case the input dataset have one extra, unexpected dimension. */
820ec7ae49cSHåkon Strandenes   if (rdim == dim + 1) {
821ec7ae49cSHåkon Strandenes     /* In this case the block size unity */
822ec7ae49cSHåkon Strandenes     if (dd->w == 1 && dims[dofInd] == 1) dim2 = PETSC_TRUE;
823ec7ae49cSHåkon Strandenes 
824ec7ae49cSHåkon Strandenes     /* Special error message for the case where dof does not match the input file */
82563a3b9bcSJacob Faibussowitsch     else PetscCheck(dd->w == (PetscInt)dims[dofInd], PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Number of dofs in file is %" PetscInt_FMT ", not %" PetscInt_FMT " as expected", (PetscInt)dims[dofInd], dd->w);
826ec7ae49cSHåkon Strandenes 
827ec7ae49cSHåkon Strandenes     /* Other cases where rdim != dim cannot be handled currently */
82863a3b9bcSJacob Faibussowitsch   } else PetscCheck(rdim == dim, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Dimension of array in file is %d, not %d as expected with dof = %" PetscInt_FMT, rdim, dim, dd->w);
829ec7ae49cSHåkon Strandenes 
830ec7ae49cSHåkon Strandenes   /* Set up the hyperslab size */
831ec7ae49cSHåkon Strandenes   dim = 0;
832ec7ae49cSHåkon Strandenes   if (timestep >= 0) {
833ec7ae49cSHåkon Strandenes     offset[dim] = timestep;
834ec7ae49cSHåkon Strandenes     count[dim]  = 1;
835ec7ae49cSHåkon Strandenes     ++dim;
836ec7ae49cSHåkon Strandenes   }
837ec7ae49cSHåkon Strandenes   if (dimension == 3) {
8389566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->zs, offset + dim));
8399566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->ze - dd->zs, count + dim));
840ec7ae49cSHåkon Strandenes     ++dim;
841ec7ae49cSHåkon Strandenes   }
842ec7ae49cSHåkon Strandenes   if (dimension > 1) {
8439566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->ys, offset + dim));
8449566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->ye - dd->ys, count + dim));
845ec7ae49cSHåkon Strandenes     ++dim;
846ec7ae49cSHåkon Strandenes   }
8479566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast(dd->xs / dd->w, offset + dim));
8489566063dSJacob Faibussowitsch   PetscCall(PetscHDF5IntCast((dd->xe - dd->xs) / dd->w, count + dim));
849ec7ae49cSHåkon Strandenes   ++dim;
850ec7ae49cSHåkon Strandenes   if (dd->w > 1 || dim2) {
851ec7ae49cSHåkon Strandenes     offset[dim] = 0;
8529566063dSJacob Faibussowitsch     PetscCall(PetscHDF5IntCast(dd->w, count + dim));
853ec7ae49cSHåkon Strandenes     ++dim;
854ec7ae49cSHåkon Strandenes   }
855ec7ae49cSHåkon Strandenes   #if defined(PETSC_USE_COMPLEX)
856ec7ae49cSHåkon Strandenes   offset[dim] = 0;
857ec7ae49cSHåkon Strandenes   count[dim]  = 2;
858ec7ae49cSHåkon Strandenes   ++dim;
859ec7ae49cSHåkon Strandenes   #endif
860ec7ae49cSHåkon Strandenes 
861ec7ae49cSHåkon Strandenes   /* Create the memory and filespace */
862792fecdfSBarry Smith   PetscCallHDF5Return(memspace, H5Screate_simple, (dim, count, NULL));
863792fecdfSBarry Smith   PetscCallHDF5(H5Sselect_hyperslab, (filespace, H5S_SELECT_SET, offset, NULL, count, NULL));
86447c6ae99SBarry Smith 
8659566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xin, &x));
866792fecdfSBarry Smith   PetscCallHDF5(H5Dread, (dset_id, scalartype, memspace, filespace, hdf5->dxpl_id, x));
8679566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xin, &x));
86847c6ae99SBarry Smith 
86947c6ae99SBarry Smith   /* Close/release resources */
870ad540459SPierre Jolivet   if (group != file_id) PetscCallHDF5(H5Gclose, (group));
871792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (filespace));
872792fecdfSBarry Smith   PetscCallHDF5(H5Sclose, (memspace));
873792fecdfSBarry Smith   PetscCallHDF5(H5Dclose, (dset_id));
8743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
87547c6ae99SBarry Smith }
87647c6ae99SBarry Smith #endif
87747c6ae99SBarry Smith 
87866976f2fSJacob Faibussowitsch static PetscErrorCode VecLoad_Binary_DA(Vec xin, PetscViewer viewer)
879d71ae5a4SJacob Faibussowitsch {
8809a42bb27SBarry Smith   DM          da;
88147c6ae99SBarry Smith   Vec         natural;
88247c6ae99SBarry Smith   const char *prefix;
88347c6ae99SBarry Smith   PetscInt    bs;
88447c6ae99SBarry Smith   PetscBool   flag;
88547c6ae99SBarry Smith   DM_DA      *dd;
88647c6ae99SBarry Smith #if defined(PETSC_HAVE_MPIIO)
88747c6ae99SBarry Smith   PetscBool isMPIIO;
88847c6ae99SBarry Smith #endif
88947c6ae99SBarry Smith 
89047c6ae99SBarry Smith   PetscFunctionBegin;
8919566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
89247c6ae99SBarry Smith   dd = (DM_DA *)da->data;
89347c6ae99SBarry Smith #if defined(PETSC_HAVE_MPIIO)
8949566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryGetUseMPIIO(viewer, &isMPIIO));
89547c6ae99SBarry Smith   if (isMPIIO) {
8969566063dSJacob Faibussowitsch     PetscCall(DMDAArrayMPIIO(da, viewer, xin, PETSC_FALSE));
8973ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
89847c6ae99SBarry Smith   }
89947c6ae99SBarry Smith #endif
90047c6ae99SBarry Smith 
9019566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)xin, &prefix));
9029566063dSJacob Faibussowitsch   PetscCall(DMDACreateNaturalVector(da, &natural));
9039566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)natural, ((PetscObject)xin)->name));
9049566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)natural, prefix));
9059566063dSJacob Faibussowitsch   PetscCall(VecLoad(natural, viewer));
9069566063dSJacob Faibussowitsch   PetscCall(DMDANaturalToGlobalBegin(da, natural, INSERT_VALUES, xin));
9079566063dSJacob Faibussowitsch   PetscCall(DMDANaturalToGlobalEnd(da, natural, INSERT_VALUES, xin));
9089566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&natural));
9099566063dSJacob Faibussowitsch   PetscCall(PetscInfo(xin, "Loading vector from natural ordering into DMDA\n"));
9109566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)xin)->prefix, "-vecload_block_size", &bs, &flag));
91148a46eb9SPierre Jolivet   if (flag && bs != dd->w) PetscCall(PetscInfo(xin, "Block size in file %" PetscInt_FMT " not equal to DMDA's dof %" PetscInt_FMT "\n", bs, dd->w));
9123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91347c6ae99SBarry Smith }
91447c6ae99SBarry Smith 
915d71ae5a4SJacob Faibussowitsch PetscErrorCode VecLoad_Default_DA(Vec xin, PetscViewer viewer)
916d71ae5a4SJacob Faibussowitsch {
9179a42bb27SBarry Smith   DM        da;
91847c6ae99SBarry Smith   PetscBool isbinary;
91947c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
92047c6ae99SBarry Smith   PetscBool ishdf5;
92147c6ae99SBarry Smith #endif
92247c6ae99SBarry Smith 
92347c6ae99SBarry Smith   PetscFunctionBegin;
9249566063dSJacob Faibussowitsch   PetscCall(VecGetDM(xin, &da));
9257a8be351SBarry Smith   PetscCheck(da, PetscObjectComm((PetscObject)xin), PETSC_ERR_ARG_WRONG, "Vector not generated from a DMDA");
92647c6ae99SBarry Smith 
92747c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
9289566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
92947c6ae99SBarry Smith #endif
9309566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
93147c6ae99SBarry Smith 
93247c6ae99SBarry Smith   if (isbinary) {
9339566063dSJacob Faibussowitsch     PetscCall(VecLoad_Binary_DA(xin, viewer));
93447c6ae99SBarry Smith #if defined(PETSC_HAVE_HDF5)
93547c6ae99SBarry Smith   } else if (ishdf5) {
9369566063dSJacob Faibussowitsch     PetscCall(VecLoad_HDF5_DA(xin, viewer));
93747c6ae99SBarry Smith #endif
93898921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Viewer type %s not supported for vector loading", ((PetscObject)viewer)->type_name);
9393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
94047c6ae99SBarry Smith }
941