18135c375SStefano Zampini /* Routines to visualize DMDAs and fields through GLVis */ 28135c375SStefano Zampini 38135c375SStefano Zampini #include <petsc/private/dmdaimpl.h> 48135c375SStefano Zampini #include <petsc/private/glvisviewerimpl.h> 58135c375SStefano Zampini 68135c375SStefano Zampini typedef struct { 746900a7fSStefano Zampini PetscBool ll; 846900a7fSStefano Zampini } DMDAGhostedGLVisViewerCtx; 98135c375SStefano Zampini 10*2a8381b2SBarry Smith static PetscErrorCode DMDAGhostedDestroyGLVisViewerCtx_Private(PetscCtxRt vctx) 11d71ae5a4SJacob Faibussowitsch { 1246900a7fSStefano Zampini PetscFunctionBegin; 13*2a8381b2SBarry Smith PetscCall(PetscFree(*(void **)vctx)); 143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1546900a7fSStefano Zampini } 1646900a7fSStefano Zampini 1746900a7fSStefano Zampini typedef struct { 1846900a7fSStefano Zampini Vec xlocal; 1946900a7fSStefano Zampini } DMDAFieldGLVisViewerCtx; 2046900a7fSStefano Zampini 21*2a8381b2SBarry Smith static PetscErrorCode DMDAFieldDestroyGLVisViewerCtx_Private(PetscCtxRt vctx) 22d71ae5a4SJacob Faibussowitsch { 23e6aa7a3bSBarry Smith DMDAFieldGLVisViewerCtx *ctx = *(DMDAFieldGLVisViewerCtx **)vctx; 248135c375SStefano Zampini 258135c375SStefano Zampini PetscFunctionBegin; 269566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ctx->xlocal)); 27e6aa7a3bSBarry Smith PetscCall(PetscFree(ctx)); 283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 298135c375SStefano Zampini } 308135c375SStefano Zampini 3146900a7fSStefano Zampini /* 3246900a7fSStefano Zampini dactx->ll is false -> all but the last proc per dimension claim the ghosted node on the right 3346900a7fSStefano Zampini dactx->ll is true -> all but the first proc per dimension claim the ghosted node on the left 3446900a7fSStefano Zampini */ 35d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDAGetNumElementsGhosted(DM da, PetscInt *nex, PetscInt *ney, PetscInt *nez) 36d71ae5a4SJacob Faibussowitsch { 3746900a7fSStefano Zampini DMDAGhostedGLVisViewerCtx *dactx; 3846900a7fSStefano Zampini PetscInt sx, sy, sz, ien, jen, ken; 398135c375SStefano Zampini 408135c375SStefano Zampini PetscFunctionBegin; 41aab5bcd8SJed Brown /* Appease -Wmaybe-uninitialized */ 42aab5bcd8SJed Brown if (nex) *nex = -1; 43aab5bcd8SJed Brown if (ney) *ney = -1; 44aab5bcd8SJed Brown if (nez) *nez = -1; 459566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &sx, &sy, &sz, &ien, &jen, &ken)); 469566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(da, &dactx)); 4746900a7fSStefano Zampini if (dactx->ll) { 4846900a7fSStefano Zampini PetscInt dim; 4946900a7fSStefano Zampini 509566063dSJacob Faibussowitsch PetscCall(DMGetDimension(da, &dim)); 5146900a7fSStefano Zampini if (!sx) ien--; 5246900a7fSStefano Zampini if (!sy && dim > 1) jen--; 5346900a7fSStefano Zampini if (!sz && dim > 2) ken--; 5446900a7fSStefano Zampini } else { 5546900a7fSStefano Zampini PetscInt M, N, P; 5646900a7fSStefano Zampini 579566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, NULL, &M, &N, &P, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL)); 588135c375SStefano Zampini if (sx + ien == M) ien--; 598135c375SStefano Zampini if (sy + jen == N) jen--; 608135c375SStefano Zampini if (sz + ken == P) ken--; 6146900a7fSStefano Zampini } 628135c375SStefano Zampini if (nex) *nex = ien; 638135c375SStefano Zampini if (ney) *ney = jen; 648135c375SStefano Zampini if (nez) *nez = ken; 653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 668135c375SStefano Zampini } 678135c375SStefano Zampini 688135c375SStefano Zampini /* inherits number of vertices from DMDAGetNumElementsGhosted */ 69d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDAGetNumVerticesGhosted(DM da, PetscInt *nvx, PetscInt *nvy, PetscInt *nvz) 70d71ae5a4SJacob Faibussowitsch { 7121414b21SStefano Zampini PetscInt ien = 0, jen = 0, ken = 0, dim; 7221414b21SStefano Zampini PetscInt tote; 738135c375SStefano Zampini 748135c375SStefano Zampini PetscFunctionBegin; 759566063dSJacob Faibussowitsch PetscCall(DMGetDimension(da, &dim)); 769566063dSJacob Faibussowitsch PetscCall(DMDAGetNumElementsGhosted(da, &ien, &jen, &ken)); 7721414b21SStefano Zampini tote = ien * (dim > 1 ? jen : 1) * (dim > 2 ? ken : 1); 7821414b21SStefano Zampini if (tote) { 798135c375SStefano Zampini ien = ien + 1; 808135c375SStefano Zampini jen = dim > 1 ? jen + 1 : 1; 818135c375SStefano Zampini ken = dim > 2 ? ken + 1 : 1; 8221414b21SStefano Zampini } 838135c375SStefano Zampini if (nvx) *nvx = ien; 848135c375SStefano Zampini if (nvy) *nvy = jen; 858135c375SStefano Zampini if (nvz) *nvz = ken; 863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 878135c375SStefano Zampini } 888135c375SStefano Zampini 89d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDASampleGLVisFields_Private(PetscObject oX, PetscInt nf, PetscObject oXf[], void *vctx) 90d71ae5a4SJacob Faibussowitsch { 918135c375SStefano Zampini DM da; 9246900a7fSStefano Zampini DMDAFieldGLVisViewerCtx *ctx = (DMDAFieldGLVisViewerCtx *)vctx; 9346900a7fSStefano Zampini DMDAGhostedGLVisViewerCtx *dactx; 948135c375SStefano Zampini const PetscScalar *array; 958135c375SStefano Zampini PetscScalar **arrayf; 9658b7e2c1SStefano Zampini PetscInt i, f, ii, ien, jen, ken, ie, je, ke, bs, *bss, *nfs; 978135c375SStefano Zampini PetscInt sx, sy, sz, gsx, gsy, gsz, ist, jst, kst, gm, gn, gp; 988135c375SStefano Zampini 998135c375SStefano Zampini PetscFunctionBegin; 1009566063dSJacob Faibussowitsch PetscCall(VecGetDM(ctx->xlocal, &da)); 1017a8be351SBarry Smith PetscCheck(da, PetscObjectComm(oX), PETSC_ERR_ARG_WRONG, "Vector not generated from a DMDA"); 1029566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(da, &dactx)); 1039566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(ctx->xlocal, &bs)); 1049566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(da, (Vec)oX, INSERT_VALUES, ctx->xlocal)); 1059566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(da, (Vec)oX, INSERT_VALUES, ctx->xlocal)); 1069566063dSJacob Faibussowitsch PetscCall(DMDAGetNumVerticesGhosted(da, &ien, &jen, &ken)); 1079566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gsx, &gsy, &gsz, &gm, &gn, &gp)); 1089566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &sx, &sy, &sz, NULL, NULL, NULL)); 10946900a7fSStefano Zampini if (dactx->ll) { 11046900a7fSStefano Zampini kst = jst = ist = 0; 11146900a7fSStefano Zampini } else { 1128135c375SStefano Zampini kst = gsz != sz ? 1 : 0; 1138135c375SStefano Zampini jst = gsy != sy ? 1 : 0; 1148135c375SStefano Zampini ist = gsx != sx ? 1 : 0; 11546900a7fSStefano Zampini } 11658b7e2c1SStefano Zampini PetscCall(PetscMalloc3(nf, &arrayf, nf, &bss, nf, &nfs)); 1179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ctx->xlocal, &array)); 1188135c375SStefano Zampini for (f = 0; f < nf; f++) { 1199566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize((Vec)oXf[f], &bss[f])); 1209566063dSJacob Faibussowitsch PetscCall(VecGetArray((Vec)oXf[f], &arrayf[f])); 12158b7e2c1SStefano Zampini PetscCall(VecGetLocalSize((Vec)oXf[f], &nfs[f])); 1228135c375SStefano Zampini } 1238135c375SStefano Zampini for (ke = kst, ii = 0; ke < kst + ken; ke++) { 1248135c375SStefano Zampini for (je = jst; je < jst + jen; je++) { 1258135c375SStefano Zampini for (ie = ist; ie < ist + ien; ie++) { 1268135c375SStefano Zampini PetscInt cf, b; 1278135c375SStefano Zampini i = ke * gm * gn + je * gm + ie; 12858b7e2c1SStefano Zampini for (f = 0, cf = 0; f < nf; f++) { 12958b7e2c1SStefano Zampini if (!nfs[f]) continue; 1309371c9d4SSatish Balay for (b = 0; b < bss[f]; b++) arrayf[f][bss[f] * ii + b] = array[i * bs + cf++]; 13158b7e2c1SStefano Zampini } 1328135c375SStefano Zampini ii++; 1338135c375SStefano Zampini } 1348135c375SStefano Zampini } 1358135c375SStefano Zampini } 1369566063dSJacob Faibussowitsch for (f = 0; f < nf; f++) PetscCall(VecRestoreArray((Vec)oXf[f], &arrayf[f])); 1379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ctx->xlocal, &array)); 13858b7e2c1SStefano Zampini PetscCall(PetscFree3(arrayf, bss, nfs)); 1393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1408135c375SStefano Zampini } 1418135c375SStefano Zampini 142ba38deedSJacob Faibussowitsch PetscErrorCode DMSetUpGLVisViewer_DMDA(PetscObject oda, PetscViewer viewer) 143d71ae5a4SJacob Faibussowitsch { 14446900a7fSStefano Zampini DM da = (DM)oda, daview; 1458135c375SStefano Zampini 1468135c375SStefano Zampini PetscFunctionBegin; 1479566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery(oda, "GLVisGraphicsDMDAGhosted", (PetscObject *)&daview)); 14846900a7fSStefano Zampini if (!daview) { 14946900a7fSStefano Zampini DMDAGhostedGLVisViewerCtx *dactx; 15046900a7fSStefano Zampini DM dacoord = NULL; 15146900a7fSStefano Zampini Vec xcoor, xcoorl; 15246900a7fSStefano Zampini PetscBool hashocoord = PETSC_FALSE; 15346900a7fSStefano Zampini const PetscInt *lx, *ly, *lz; 15446900a7fSStefano Zampini PetscInt dim, M, N, P, m, n, p, dof, s, i; 15546900a7fSStefano Zampini 1569566063dSJacob Faibussowitsch PetscCall(PetscNew(&dactx)); 157a7bda6aaSStefano Zampini dactx->ll = PETSC_TRUE; /* default to match elements layout obtained by DMDAGetElements */ 158d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm(oda), oda->prefix, "GLVis PetscViewer DMDA Options", "PetscViewer"); 1599566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-viewer_glvis_dm_da_ll", "Left-looking subdomain view", NULL, dactx->ll, &dactx->ll, NULL)); 160d0609cedSBarry Smith PetscOptionsEnd(); 1618135c375SStefano Zampini /* Create a properly ghosted DMDA to visualize the mesh and the fields associated with */ 1629566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(da, &dim, &M, &N, &P, &m, &n, &p, &dof, &s, NULL, NULL, NULL, NULL)); 1639566063dSJacob Faibussowitsch PetscCall(DMDAGetOwnershipRanges(da, &lx, &ly, &lz)); 1649566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)da, "_glvis_mesh_coords", (PetscObject *)&xcoor)); 16577eacf09SStefano Zampini if (!xcoor) { 1669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(da, &xcoor)); 16777eacf09SStefano Zampini } else { 1688f07809aSStefano Zampini hashocoord = PETSC_TRUE; 16977eacf09SStefano Zampini } 1706aad120cSJose E. Roman PetscCall(PetscInfo(da, "Creating auxiliary DMDA for managing GLVis graphics\n")); 1718135c375SStefano Zampini switch (dim) { 1728135c375SStefano Zampini case 1: 1739566063dSJacob Faibussowitsch PetscCall(DMDACreate1d(PetscObjectComm((PetscObject)da), DM_BOUNDARY_NONE, M, dof, 1, lx, &daview)); 17448a46eb9SPierre Jolivet if (!hashocoord) PetscCall(DMDACreate1d(PetscObjectComm((PetscObject)da), DM_BOUNDARY_NONE, M, 1, 1, lx, &dacoord)); 1758135c375SStefano Zampini break; 1768135c375SStefano Zampini case 2: 1779566063dSJacob Faibussowitsch PetscCall(DMDACreate2d(PetscObjectComm((PetscObject)da), DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, M, N, m, n, dof, 1, lx, ly, &daview)); 17848a46eb9SPierre Jolivet if (!hashocoord) PetscCall(DMDACreate2d(PetscObjectComm((PetscObject)da), DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, M, N, m, n, 2, 1, lx, ly, &dacoord)); 1798135c375SStefano Zampini break; 1808135c375SStefano Zampini case 3: 1819566063dSJacob Faibussowitsch PetscCall(DMDACreate3d(PetscObjectComm((PetscObject)da), DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, M, N, P, m, n, p, dof, 1, lx, ly, lz, &daview)); 18248a46eb9SPierre Jolivet if (!hashocoord) PetscCall(DMDACreate3d(PetscObjectComm((PetscObject)da), DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DM_BOUNDARY_NONE, DMDA_STENCIL_BOX, M, N, P, m, n, p, 3, 1, lx, ly, lz, &dacoord)); 1838135c375SStefano Zampini break; 184d71ae5a4SJacob Faibussowitsch default: 185d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)da), PETSC_ERR_SUP, "Unsupported dimension %" PetscInt_FMT, dim); 1868135c375SStefano Zampini } 1879566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(daview, dactx)); 1889566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContextDestroy(daview, DMDAGhostedDestroyGLVisViewerCtx_Private)); 1899566063dSJacob Faibussowitsch PetscCall(DMSetUp(daview)); 1908135c375SStefano Zampini if (!xcoor) { 1919566063dSJacob Faibussowitsch PetscCall(DMDASetUniformCoordinates(daview, 0.0, 1.0, 0.0, 1.0, 0.0, 1.0)); 1929566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(daview, &xcoor)); 1938135c375SStefano Zampini } 1948f07809aSStefano Zampini if (dacoord) { 1959566063dSJacob Faibussowitsch PetscCall(DMSetUp(dacoord)); 1969566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dacoord, &xcoorl)); 1979566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dacoord, xcoor, INSERT_VALUES, xcoorl)); 1989566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dacoord, xcoor, INSERT_VALUES, xcoorl)); 1999566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dacoord)); 2008f07809aSStefano Zampini } else { 2018f07809aSStefano Zampini PetscInt ien, jen, ken, nc, nl, cdof, deg; 2023e7cab22SLisandro Dalcin char fecmesh[64]; 20321414b21SStefano Zampini const char *name; 20421414b21SStefano Zampini PetscBool flg; 2058135c375SStefano Zampini 2069566063dSJacob Faibussowitsch PetscCall(DMDAGetNumElementsGhosted(daview, &ien, &jen, &ken)); 2078f07809aSStefano Zampini nc = ien * (jen > 0 ? jen : 1) * (ken > 0 ? ken : 1); 2088f07809aSStefano Zampini 2099566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xcoor, &nl)); 2101dca8a05SBarry Smith PetscCheck(!nc || (nl % nc) == 0, PETSC_COMM_SELF, PETSC_ERR_SUP, "Incompatible local coordinate size %" PetscInt_FMT " and number of cells %" PetscInt_FMT, nl, nc); 2119566063dSJacob Faibussowitsch PetscCall(VecDuplicate(xcoor, &xcoorl)); 2129566063dSJacob Faibussowitsch PetscCall(VecCopy(xcoor, xcoorl)); 2139566063dSJacob Faibussowitsch PetscCall(VecSetDM(xcoorl, NULL)); 2149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)xcoor, &name)); 2159566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(name, "FiniteElementCollection:", &flg)); 21621414b21SStefano Zampini if (!flg) { 21721414b21SStefano Zampini deg = 0; 21821414b21SStefano Zampini if (nc && nl) { 2198f07809aSStefano Zampini cdof = nl / (nc * dim); 2208f07809aSStefano Zampini deg = 1; 2218f07809aSStefano Zampini while (1) { 2228f07809aSStefano Zampini PetscInt degd = 1; 2238f07809aSStefano Zampini for (i = 0; i < dim; i++) degd *= (deg + 1); 22463a3b9bcSJacob Faibussowitsch PetscCheck(degd <= cdof, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell dofs %" PetscInt_FMT, cdof); 2258f07809aSStefano Zampini if (degd == cdof) break; 2268f07809aSStefano Zampini deg++; 2278f07809aSStefano Zampini } 22821414b21SStefano Zampini } 22963a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(fecmesh, sizeof(fecmesh), "FiniteElementCollection: L2_T1_%" PetscInt_FMT "D_P%" PetscInt_FMT, dim, deg)); 2309566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)xcoorl, fecmesh)); 2311baa6e33SBarry Smith } else PetscCall(PetscObjectSetName((PetscObject)xcoorl, name)); 2328f07809aSStefano Zampini } 2338135c375SStefano Zampini 23446900a7fSStefano Zampini /* xcoorl is composed with the ghosted DMDA, the ghosted coordinate DMDA (if present) is only available through this vector */ 2359566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)daview, "GLVisGraphicsCoordsGhosted", (PetscObject)xcoorl)); 2369566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)xcoorl)); 2378135c375SStefano Zampini 23877eacf09SStefano Zampini /* daview is composed with the original DMDA */ 2399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose(oda, "GLVisGraphicsDMDAGhosted", (PetscObject)daview)); 2409566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)daview)); 24146900a7fSStefano Zampini } 24277eacf09SStefano Zampini 243c9493c35SStefano Zampini /* customize the viewer if present */ 244c9493c35SStefano Zampini if (viewer) { 24546900a7fSStefano Zampini DMDAFieldGLVisViewerCtx *ctx; 24646900a7fSStefano Zampini DMDAGhostedGLVisViewerCtx *dactx; 24746900a7fSStefano Zampini char fec[64]; 248ab166b77SStefano Zampini Vec xlocal, *Ufield; 24946900a7fSStefano Zampini const char **dafieldname; 25046900a7fSStefano Zampini char **fec_type, **fieldname; 25146900a7fSStefano Zampini PetscInt *nlocal, *bss, *dims; 25246900a7fSStefano Zampini PetscInt dim, M, N, P, dof, s, i, nf; 25346900a7fSStefano Zampini PetscBool bsset; 2548f07809aSStefano Zampini 2559566063dSJacob Faibussowitsch PetscCall(DMDAGetInfo(daview, &dim, NULL, NULL, NULL, NULL, NULL, NULL, &dof, NULL, NULL, NULL, NULL, NULL)); 2569566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(daview, &dactx)); 2579566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(daview, &xlocal)); 2589566063dSJacob Faibussowitsch PetscCall(DMDAGetFieldNames(da, (const char *const **)&dafieldname)); 2599566063dSJacob Faibussowitsch PetscCall(DMDAGetNumVerticesGhosted(daview, &M, &N, &P)); 26063a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(fec, sizeof(fec), "FiniteElementCollection: H1_%" PetscInt_FMT "D_P1", dim)); 2619566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(dof, &fec_type, dof, &nlocal, dof, &bss, dof, &dims, dof, &fieldname, dof, &Ufield)); 2628135c375SStefano Zampini for (i = 0; i < dof; i++) bss[i] = 1; 2638135c375SStefano Zampini nf = dof; 2648135c375SStefano Zampini 265d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm(oda), oda->prefix, "GLVis PetscViewer DMDA Field options", "PetscViewer"); 2669566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-viewer_glvis_dm_da_bs", "Block sizes for subfields; enable vector representation", NULL, bss, &nf, &bsset)); 267d0609cedSBarry Smith PetscOptionsEnd(); 2688135c375SStefano Zampini if (bsset) { 2698135c375SStefano Zampini PetscInt t; 2708135c375SStefano Zampini for (i = 0, t = 0; i < nf; i++) t += bss[i]; 27163a3b9bcSJacob Faibussowitsch PetscCheck(t == dof, PetscObjectComm(oda), PETSC_ERR_USER, "Sum of block sizes %" PetscInt_FMT " should equal %" PetscInt_FMT, t, dof); 2728135c375SStefano Zampini } else nf = dof; 2738135c375SStefano Zampini 2748135c375SStefano Zampini for (i = 0, s = 0; i < nf; i++) { 2759566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fec, &fec_type[i])); 2768135c375SStefano Zampini if (bss[i] == 1) { 2779566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dafieldname[s], &fieldname[i])); 2788135c375SStefano Zampini } else { 279c6a7a370SJeremy L Thompson const char prefix[] = "Vector-"; 280c6a7a370SJeremy L Thompson const size_t prefix_len = PETSC_STATIC_ARRAY_LENGTH(prefix); 281c6a7a370SJeremy L Thompson const PetscInt bss_i = bss[i]; 282c6a7a370SJeremy L Thompson char *fname_i = NULL; 283c6a7a370SJeremy L Thompson size_t tlen = prefix_len, cur_len; 284c6a7a370SJeremy L Thompson 285c6a7a370SJeremy L Thompson for (PetscInt b = 0; b < bss_i; ++b) { 2868135c375SStefano Zampini size_t len; 287c6a7a370SJeremy L Thompson 2889566063dSJacob Faibussowitsch PetscCall(PetscStrlen(dafieldname[s + b], &len)); 2898135c375SStefano Zampini tlen += len + 1; /* field + "-" */ 2908135c375SStefano Zampini } 291c6a7a370SJeremy L Thompson PetscCall(PetscMalloc1(tlen, &fname_i)); 292c6a7a370SJeremy L Thompson PetscCall(PetscArraycpy(fname_i, prefix, prefix_len - 1)); 293c6a7a370SJeremy L Thompson cur_len = prefix_len; 294c6a7a370SJeremy L Thompson for (PetscInt b = 0; b < bss_i; ++b) { 295c6a7a370SJeremy L Thompson const char *dafname = dafieldname[s + b]; 296c6a7a370SJeremy L Thompson size_t len; 297c6a7a370SJeremy L Thompson 298c6a7a370SJeremy L Thompson PetscCall(PetscStrlen(dafname, &len)); 299363da2dcSJacob Faibussowitsch PetscCall(PetscArraycpy(fname_i + cur_len, dafname, len + 1)); 300c6a7a370SJeremy L Thompson cur_len += len + 1; 301c6a7a370SJeremy L Thompson // don't add for final iteration of the loop 302c6a7a370SJeremy L Thompson if ((b + 1) < bss_i) fname_i[cur_len++] = '-'; 3038135c375SStefano Zampini } 304c6a7a370SJeremy L Thompson fname_i[cur_len] = '\0'; 305c6a7a370SJeremy L Thompson fieldname[i] = fname_i; 3068135c375SStefano Zampini } 307bb77a09fSStefano Zampini dims[i] = dim; 3088135c375SStefano Zampini nlocal[i] = M * N * P * bss[i]; 3098135c375SStefano Zampini s += bss[i]; 3108135c375SStefano Zampini } 3118135c375SStefano Zampini 31246900a7fSStefano Zampini /* the viewer context takes ownership of xlocal and destroys it in DMDAFieldDestroyGLVisViewerCtx_Private */ 3139566063dSJacob Faibussowitsch PetscCall(PetscNew(&ctx)); 3148135c375SStefano Zampini ctx->xlocal = xlocal; 3158135c375SStefano Zampini 3164cac2994SStefano Zampini /* create work vectors */ 3174cac2994SStefano Zampini for (i = 0; i < nf; i++) { 3189566063dSJacob Faibussowitsch PetscCall(VecCreateMPI(PetscObjectComm((PetscObject)da), nlocal[i], PETSC_DECIDE, &Ufield[i])); 3199566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)Ufield[i], fieldname[i])); 32058b7e2c1SStefano Zampini PetscCall(VecSetBlockSize(Ufield[i], PetscMax(bss[i], 1))); 3219566063dSJacob Faibussowitsch PetscCall(VecSetDM(Ufield[i], da)); 3224cac2994SStefano Zampini } 3234cac2994SStefano Zampini 3249566063dSJacob Faibussowitsch PetscCall(PetscViewerGLVisSetFields(viewer, nf, (const char **)fec_type, dims, DMDASampleGLVisFields_Private, (PetscObject *)Ufield, ctx, DMDAFieldDestroyGLVisViewerCtx_Private)); 3258135c375SStefano Zampini for (i = 0; i < nf; i++) { 3269566063dSJacob Faibussowitsch PetscCall(PetscFree(fec_type[i])); 3279566063dSJacob Faibussowitsch PetscCall(PetscFree(fieldname[i])); 3289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&Ufield[i])); 3298135c375SStefano Zampini } 3309566063dSJacob Faibussowitsch PetscCall(PetscFree6(fec_type, nlocal, bss, dims, fieldname, Ufield)); 331c9493c35SStefano Zampini } 3323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3338135c375SStefano Zampini } 3348135c375SStefano Zampini 335d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDAView_GLVis_ASCII(DM dm, PetscViewer viewer) 336d71ae5a4SJacob Faibussowitsch { 33777eacf09SStefano Zampini DM da, cda; 3388135c375SStefano Zampini Vec xcoorl; 3393924b612SStefano Zampini PetscMPIInt size; 3408135c375SStefano Zampini const PetscScalar *array; 3418135c375SStefano Zampini PetscContainer glvis_container; 34277eacf09SStefano Zampini PetscInt dim, sdim, i, vid[8], mid, cid, cdof; 34321414b21SStefano Zampini PetscInt sx, sy, sz, ie, je, ke, ien, jen, ken, nel; 3448135c375SStefano Zampini PetscInt gsx, gsy, gsz, gm, gn, gp, kst, jst, ist; 3458135c375SStefano Zampini PetscBool enabled = PETSC_TRUE, isascii; 3468f07809aSStefano Zampini const char *fmt; 3478135c375SStefano Zampini 3488135c375SStefano Zampini PetscFunctionBegin; 3498135c375SStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3508135c375SStefano Zampini PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 3527a8be351SBarry Smith PetscCheck(isascii, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer must be of type VIEWERASCII"); 3539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)viewer), &size)); 35408401ef6SPierre Jolivet PetscCheck(size <= 1, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Use single sequential viewers for parallel visualization"); 3559566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3568135c375SStefano Zampini 3578135c375SStefano Zampini /* get container: determines if a process visualizes is portion of the data or not */ 3589566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)viewer, "_glvis_info_container", (PetscObject *)&glvis_container)); 3597a8be351SBarry Smith PetscCheck(glvis_container, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing GLVis container"); 3608135c375SStefano Zampini { 3618135c375SStefano Zampini PetscViewerGLVisInfo glvis_info; 362*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(glvis_container, &glvis_info)); 3638135c375SStefano Zampini enabled = glvis_info->enabled; 36477eacf09SStefano Zampini fmt = glvis_info->fmt; 3658135c375SStefano Zampini } 366c9493c35SStefano Zampini /* this can happen if we are calling DMView outside of VecView_GLVis */ 3679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "GLVisGraphicsDMDAGhosted", (PetscObject *)&da)); 3689566063dSJacob Faibussowitsch if (!da) PetscCall(DMSetUpGLVisViewer_DMDA((PetscObject)dm, NULL)); 3699566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "GLVisGraphicsDMDAGhosted", (PetscObject *)&da)); 3707a8be351SBarry Smith PetscCheck(da, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing GLVis ghosted DMDA"); 3719566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(da, &sdim)); 3728135c375SStefano Zampini 3739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "MFEM mesh v1.0\n")); 3749566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\ndimension\n")); 37563a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", dim)); 3768135c375SStefano Zampini 3778135c375SStefano Zampini if (!enabled) { 3789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\nelements\n")); 37963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "0\n")); 3809566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\nboundary\n")); 38163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "0\n")); 3829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\nvertices\n")); 38363a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "0\n")); 38463a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", sdim)); 3853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3868135c375SStefano Zampini } 3878135c375SStefano Zampini 3889566063dSJacob Faibussowitsch PetscCall(DMDAGetNumElementsGhosted(da, &ien, &jen, &ken)); 38921414b21SStefano Zampini nel = ien; 39021414b21SStefano Zampini if (dim > 1) nel *= jen; 39121414b21SStefano Zampini if (dim > 2) nel *= ken; 3929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\nelements\n")); 39363a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", nel)); 3948135c375SStefano Zampini switch (dim) { 3958135c375SStefano Zampini case 1: 3968135c375SStefano Zampini for (ie = 0; ie < ien; ie++) { 3978135c375SStefano Zampini vid[0] = ie; 3988135c375SStefano Zampini vid[1] = ie + 1; 3998135c375SStefano Zampini mid = 1; /* material id */ 4008135c375SStefano Zampini cid = 1; /* segment */ 40163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", mid, cid, vid[0], vid[1])); 4028135c375SStefano Zampini } 4038135c375SStefano Zampini break; 4048135c375SStefano Zampini case 2: 4058135c375SStefano Zampini for (je = 0; je < jen; je++) { 4068135c375SStefano Zampini for (ie = 0; ie < ien; ie++) { 4078135c375SStefano Zampini vid[0] = je * (ien + 1) + ie; 4088135c375SStefano Zampini vid[1] = je * (ien + 1) + ie + 1; 4098135c375SStefano Zampini vid[2] = (je + 1) * (ien + 1) + ie + 1; 4108135c375SStefano Zampini vid[3] = (je + 1) * (ien + 1) + ie; 4118135c375SStefano Zampini mid = 1; /* material id */ 4128135c375SStefano Zampini cid = 3; /* quad */ 41363a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", mid, cid, vid[0], vid[1], vid[2], vid[3])); 4148135c375SStefano Zampini } 4158135c375SStefano Zampini } 4168135c375SStefano Zampini break; 4178135c375SStefano Zampini case 3: 4188135c375SStefano Zampini for (ke = 0; ke < ken; ke++) { 4198135c375SStefano Zampini for (je = 0; je < jen; je++) { 4208135c375SStefano Zampini for (ie = 0; ie < ien; ie++) { 4218135c375SStefano Zampini vid[0] = ke * (jen + 1) * (ien + 1) + je * (ien + 1) + ie; 4228135c375SStefano Zampini vid[1] = ke * (jen + 1) * (ien + 1) + je * (ien + 1) + ie + 1; 4238135c375SStefano Zampini vid[2] = ke * (jen + 1) * (ien + 1) + (je + 1) * (ien + 1) + ie + 1; 4248135c375SStefano Zampini vid[3] = ke * (jen + 1) * (ien + 1) + (je + 1) * (ien + 1) + ie; 4258135c375SStefano Zampini vid[4] = (ke + 1) * (jen + 1) * (ien + 1) + je * (ien + 1) + ie; 4268135c375SStefano Zampini vid[5] = (ke + 1) * (jen + 1) * (ien + 1) + je * (ien + 1) + ie + 1; 4278135c375SStefano Zampini vid[6] = (ke + 1) * (jen + 1) * (ien + 1) + (je + 1) * (ien + 1) + ie + 1; 4288135c375SStefano Zampini vid[7] = (ke + 1) * (jen + 1) * (ien + 1) + (je + 1) * (ien + 1) + ie; 4298135c375SStefano Zampini mid = 1; /* material id */ 4308135c375SStefano Zampini cid = 5; /* hex */ 43163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT "\n", mid, cid, vid[0], vid[1], vid[2], vid[3], vid[4], vid[5], vid[6], vid[7])); 4328135c375SStefano Zampini } 4338135c375SStefano Zampini } 4348135c375SStefano Zampini } 4358135c375SStefano Zampini break; 436d71ae5a4SJacob Faibussowitsch default: 437d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)da), PETSC_ERR_SUP, "Unsupported dimension %" PetscInt_FMT, dim); 4388135c375SStefano Zampini } 4399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\nboundary\n")); 44063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "0\n")); 4418135c375SStefano Zampini 44277eacf09SStefano Zampini /* vertex coordinates */ 4439566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)da, "GLVisGraphicsCoordsGhosted", (PetscObject *)&xcoorl)); 4447a8be351SBarry Smith PetscCheck(xcoorl, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing GLVis ghosted coords"); 4459566063dSJacob Faibussowitsch PetscCall(DMDAGetNumVerticesGhosted(da, &ien, &jen, &ken)); 4469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\nvertices\n")); 44763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", ien * jen * ken)); 44821414b21SStefano Zampini if (nel) { 4499566063dSJacob Faibussowitsch PetscCall(VecGetDM(xcoorl, &cda)); 4509566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(xcoorl, &array)); 4518f07809aSStefano Zampini if (!cda) { /* HO viz */ 4528f07809aSStefano Zampini const char *fecname; 4538f07809aSStefano Zampini PetscInt nc, nl; 4548f07809aSStefano Zampini 4559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)xcoorl, &fecname)); 4569566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "nodes\n")); 4579566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "FiniteElementSpace\n")); 4589566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s\n", fecname)); 45963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "VDim: %" PetscInt_FMT "\n", sdim)); 4609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Ordering: 1\n\n")); /*Ordering::byVDIM*/ 4618f07809aSStefano Zampini /* L2 coordinates */ 4629566063dSJacob Faibussowitsch PetscCall(DMDAGetNumElementsGhosted(da, &ien, &jen, &ken)); 4639566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xcoorl, &nl)); 4648f07809aSStefano Zampini nc = ien * (jen > 0 ? jen : 1) * (ken > 0 ? ken : 1); 46521414b21SStefano Zampini cdof = nc ? nl / nc : 0; 4668f07809aSStefano Zampini if (!ien) ien++; 4678f07809aSStefano Zampini if (!jen) jen++; 4688f07809aSStefano Zampini if (!ken) ken++; 4698f07809aSStefano Zampini ist = jst = kst = 0; 4708f07809aSStefano Zampini gm = ien; 4718f07809aSStefano Zampini gn = jen; 4728f07809aSStefano Zampini gp = ken; 47377eacf09SStefano Zampini } else { 47446900a7fSStefano Zampini DMDAGhostedGLVisViewerCtx *dactx; 47546900a7fSStefano Zampini 4769566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(da, &dactx)); 47763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT "\n", sdim)); 4788f07809aSStefano Zampini cdof = sdim; 4799566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da, &sx, &sy, &sz, NULL, NULL, NULL)); 4809566063dSJacob Faibussowitsch PetscCall(DMDAGetGhostCorners(da, &gsx, &gsy, &gsz, &gm, &gn, &gp)); 48146900a7fSStefano Zampini if (dactx->ll) { 48246900a7fSStefano Zampini kst = jst = ist = 0; 48346900a7fSStefano Zampini } else { 4848135c375SStefano Zampini kst = gsz != sz ? 1 : 0; 4858135c375SStefano Zampini jst = gsy != sy ? 1 : 0; 4868135c375SStefano Zampini ist = gsx != sx ? 1 : 0; 4878f07809aSStefano Zampini } 48846900a7fSStefano Zampini } 4898135c375SStefano Zampini for (ke = kst; ke < kst + ken; ke++) { 4908135c375SStefano Zampini for (je = jst; je < jst + jen; je++) { 4918135c375SStefano Zampini for (ie = ist; ie < ist + ien; ie++) { 49277eacf09SStefano Zampini PetscInt c; 4938135c375SStefano Zampini 4948135c375SStefano Zampini i = ke * gm * gn + je * gm + ie; 49577eacf09SStefano Zampini for (c = 0; c < cdof / sdim; c++) { 49677eacf09SStefano Zampini PetscInt d; 49748a46eb9SPierre Jolivet for (d = 0; d < sdim; d++) PetscCall(PetscViewerASCIIPrintf(viewer, fmt, PetscRealPart(array[cdof * i + c * sdim + d]))); 4989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 49977eacf09SStefano Zampini } 5008135c375SStefano Zampini } 5018135c375SStefano Zampini } 5028135c375SStefano Zampini } 5039566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(xcoorl, &array)); 50421414b21SStefano Zampini } 5053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5068135c375SStefano Zampini } 5078135c375SStefano Zampini 508d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView_DA_GLVis(DM dm, PetscViewer viewer) 509d71ae5a4SJacob Faibussowitsch { 5108135c375SStefano Zampini PetscFunctionBegin; 5119566063dSJacob Faibussowitsch PetscCall(DMView_GLVis(dm, viewer, DMDAView_GLVis_ASCII)); 5123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5138135c375SStefano Zampini } 514