xref: /petsc/src/dm/impls/forest/forest.c (revision 5a856986583887c326abe5dfd149e8184a29cd80)
19be51f97SToby Isaac #include <petsc/private/dmforestimpl.h> /*I "petscdmforest.h" I*/
29be51f97SToby Isaac #include <petsc/private/dmimpl.h>       /*I "petscdm.h" I*/
3a1b0c543SToby Isaac #include <petsc/private/dmlabelimpl.h>  /*I "petscdmlabel.h" I*/
4ef19d27cSToby Isaac #include <petscsf.h>
5db4d5e8cSToby Isaac 
627d4645fSToby Isaac PetscBool DMForestPackageInitialized = PETSC_FALSE;
727d4645fSToby Isaac 
827d4645fSToby Isaac typedef struct _DMForestTypeLink*DMForestTypeLink;
927d4645fSToby Isaac 
1027d4645fSToby Isaac struct _DMForestTypeLink
1127d4645fSToby Isaac {
1227d4645fSToby Isaac   char             *name;
1327d4645fSToby Isaac   DMForestTypeLink next;
1427d4645fSToby Isaac };
1527d4645fSToby Isaac 
1627d4645fSToby Isaac DMForestTypeLink DMForestTypeList;
1727d4645fSToby Isaac 
1827d4645fSToby Isaac static PetscErrorCode DMForestPackageFinalize(void)
1927d4645fSToby Isaac {
2027d4645fSToby Isaac   DMForestTypeLink oldLink, link = DMForestTypeList;
2127d4645fSToby Isaac   PetscErrorCode   ierr;
2227d4645fSToby Isaac 
2327d4645fSToby Isaac   PetscFunctionBegin;
2427d4645fSToby Isaac   while (link) {
2527d4645fSToby Isaac     oldLink = link;
26f416af30SBarry Smith     ierr    = PetscFree(oldLink->name);CHKERRQ(ierr);
2727d4645fSToby Isaac     link    = oldLink->next;
2827d4645fSToby Isaac     ierr    = PetscFree(oldLink);CHKERRQ(ierr);
2927d4645fSToby Isaac   }
3027d4645fSToby Isaac   PetscFunctionReturn(0);
3127d4645fSToby Isaac }
3227d4645fSToby Isaac 
3327d4645fSToby Isaac static PetscErrorCode DMForestPackageInitialize(void)
3427d4645fSToby Isaac {
3527d4645fSToby Isaac   PetscErrorCode ierr;
3627d4645fSToby Isaac 
3727d4645fSToby Isaac   PetscFunctionBegin;
3827d4645fSToby Isaac   if (DMForestPackageInitialized) PetscFunctionReturn(0);
3927d4645fSToby Isaac   DMForestPackageInitialized = PETSC_TRUE;
40f885a11aSToby Isaac 
4127d4645fSToby Isaac   ierr = DMForestRegisterType(DMFOREST);CHKERRQ(ierr);
4227d4645fSToby Isaac   ierr = PetscRegisterFinalize(DMForestPackageFinalize);CHKERRQ(ierr);
4327d4645fSToby Isaac   PetscFunctionReturn(0);
4427d4645fSToby Isaac }
4527d4645fSToby Isaac 
469be51f97SToby Isaac /*@C
479be51f97SToby Isaac   DMForestRegisterType - Registers a DMType as a subtype of DMFOREST (so that DMIsForest() will be correct)
489be51f97SToby Isaac 
499be51f97SToby Isaac   Not Collective
509be51f97SToby Isaac 
519be51f97SToby Isaac   Input parameter:
529be51f97SToby Isaac . name - the name of the type
539be51f97SToby Isaac 
549be51f97SToby Isaac   Level: advanced
559be51f97SToby Isaac 
569be51f97SToby Isaac .seealso: DMFOREST, DMIsForest()
579be51f97SToby Isaac @*/
5827d4645fSToby Isaac PetscErrorCode DMForestRegisterType(DMType name)
5927d4645fSToby Isaac {
6027d4645fSToby Isaac   DMForestTypeLink link;
6127d4645fSToby Isaac   PetscErrorCode   ierr;
6227d4645fSToby Isaac 
6327d4645fSToby Isaac   PetscFunctionBegin;
6427d4645fSToby Isaac   ierr             = DMForestPackageInitialize();CHKERRQ(ierr);
6527d4645fSToby Isaac   ierr             = PetscNew(&link);CHKERRQ(ierr);
6627d4645fSToby Isaac   ierr             = PetscStrallocpy(name,&link->name);CHKERRQ(ierr);
6727d4645fSToby Isaac   link->next       = DMForestTypeList;
6827d4645fSToby Isaac   DMForestTypeList = link;
6927d4645fSToby Isaac   PetscFunctionReturn(0);
7027d4645fSToby Isaac }
7127d4645fSToby Isaac 
729be51f97SToby Isaac /*@
739be51f97SToby Isaac   DMIsForest - Check whether a DM uses the DMFOREST interface for hierarchically-refined meshes
749be51f97SToby Isaac 
759be51f97SToby Isaac   Not Collective
769be51f97SToby Isaac 
779be51f97SToby Isaac   Input parameter:
789be51f97SToby Isaac . dm - the DM object
799be51f97SToby Isaac 
809be51f97SToby Isaac   Output parameter:
819be51f97SToby Isaac . isForest - whether dm is a subtype of DMFOREST
829be51f97SToby Isaac 
839be51f97SToby Isaac   Level: intermediate
849be51f97SToby Isaac 
859be51f97SToby Isaac .seealso: DMFOREST, DMForestRegisterType()
869be51f97SToby Isaac @*/
8727d4645fSToby Isaac PetscErrorCode DMIsForest(DM dm, PetscBool *isForest)
8827d4645fSToby Isaac {
8927d4645fSToby Isaac   DMForestTypeLink link = DMForestTypeList;
9027d4645fSToby Isaac   PetscErrorCode   ierr;
9127d4645fSToby Isaac 
9227d4645fSToby Isaac   PetscFunctionBegin;
9327d4645fSToby Isaac   while (link) {
9427d4645fSToby Isaac     PetscBool sameType;
9527d4645fSToby Isaac     ierr = PetscObjectTypeCompare((PetscObject)dm,link->name,&sameType);CHKERRQ(ierr);
9627d4645fSToby Isaac     if (sameType) {
9727d4645fSToby Isaac       *isForest = PETSC_TRUE;
9827d4645fSToby Isaac       PetscFunctionReturn(0);
9927d4645fSToby Isaac     }
10027d4645fSToby Isaac     link = link->next;
10127d4645fSToby Isaac   }
10227d4645fSToby Isaac   *isForest = PETSC_FALSE;
10327d4645fSToby Isaac   PetscFunctionReturn(0);
10427d4645fSToby Isaac }
10527d4645fSToby Isaac 
1069be51f97SToby Isaac /*@
1079be51f97SToby Isaac   DMForestTemplate - Create a new DM that will be adapted from a source DM.  The new DM reproduces the configuration
1089be51f97SToby Isaac   of the source, but is not yet setup, so that the user can then define only the ways that the new DM should differ
1099be51f97SToby Isaac   (by, e.g., refinement or repartitioning).  The source DM is also set as the adaptivity source DM of the new DM (see
1109be51f97SToby Isaac   DMForestSetAdaptivityForest()).
1119be51f97SToby Isaac 
1129be51f97SToby Isaac   Collective on dm
1139be51f97SToby Isaac 
1149be51f97SToby Isaac   Input Parameters:
1159be51f97SToby Isaac + dm - the source DM object
1169be51f97SToby Isaac - comm - the communicator for the new DM (this communicator is currently ignored, but is present so that DMForestTemplate() can be used within DMCoarsen())
1179be51f97SToby Isaac 
1189be51f97SToby Isaac   Output Parameter:
1199be51f97SToby Isaac . tdm - the new DM object
1209be51f97SToby Isaac 
1219be51f97SToby Isaac   Level: intermediate
1229be51f97SToby Isaac 
1239be51f97SToby Isaac .seealso: DMForestSetAdaptivityForest()
1249be51f97SToby Isaac @*/
1259be51f97SToby Isaac PetscErrorCode DMForestTemplate(DM dm, MPI_Comm comm, DM *tdm)
126a0452a8eSToby Isaac {
127a0452a8eSToby Isaac   DM_Forest                  *forest = (DM_Forest*) dm->data;
12820e8089bSToby Isaac   DMType                     type;
129a0452a8eSToby Isaac   DM                         base;
130a0452a8eSToby Isaac   DMForestTopology           topology;
13105e99e11SStefano Zampini   MatType                    mtype;
132a0452a8eSToby Isaac   PetscInt                   dim, overlap, ref, factor;
133a0452a8eSToby Isaac   DMForestAdaptivityStrategy strat;
134795844e7SToby Isaac   void                       *ctx;
13549fc9a2fSToby Isaac   PetscErrorCode             (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void*);
1363e58adeeSToby Isaac   void                       *mapCtx;
137a0452a8eSToby Isaac   PetscErrorCode             ierr;
138a0452a8eSToby Isaac 
139a0452a8eSToby Isaac   PetscFunctionBegin;
140a0452a8eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14120e8089bSToby Isaac   ierr = DMCreate(PetscObjectComm((PetscObject)dm),tdm);CHKERRQ(ierr);
14220e8089bSToby Isaac   ierr = DMGetType(dm,&type);CHKERRQ(ierr);
14320e8089bSToby Isaac   ierr = DMSetType(*tdm,type);CHKERRQ(ierr);
144a0452a8eSToby Isaac   ierr = DMForestGetBaseDM(dm,&base);CHKERRQ(ierr);
14520e8089bSToby Isaac   ierr = DMForestSetBaseDM(*tdm,base);CHKERRQ(ierr);
146a0452a8eSToby Isaac   ierr = DMForestGetTopology(dm,&topology);CHKERRQ(ierr);
14720e8089bSToby Isaac   ierr = DMForestSetTopology(*tdm,topology);CHKERRQ(ierr);
148a0452a8eSToby Isaac   ierr = DMForestGetAdjacencyDimension(dm,&dim);CHKERRQ(ierr);
14920e8089bSToby Isaac   ierr = DMForestSetAdjacencyDimension(*tdm,dim);CHKERRQ(ierr);
150a0452a8eSToby Isaac   ierr = DMForestGetPartitionOverlap(dm,&overlap);CHKERRQ(ierr);
15120e8089bSToby Isaac   ierr = DMForestSetPartitionOverlap(*tdm,overlap);CHKERRQ(ierr);
152a0452a8eSToby Isaac   ierr = DMForestGetMinimumRefinement(dm,&ref);CHKERRQ(ierr);
15320e8089bSToby Isaac   ierr = DMForestSetMinimumRefinement(*tdm,ref);CHKERRQ(ierr);
154a0452a8eSToby Isaac   ierr = DMForestGetMaximumRefinement(dm,&ref);CHKERRQ(ierr);
15520e8089bSToby Isaac   ierr = DMForestSetMaximumRefinement(*tdm,ref);CHKERRQ(ierr);
156a0452a8eSToby Isaac   ierr = DMForestGetAdaptivityStrategy(dm,&strat);CHKERRQ(ierr);
15720e8089bSToby Isaac   ierr = DMForestSetAdaptivityStrategy(*tdm,strat);CHKERRQ(ierr);
158a0452a8eSToby Isaac   ierr = DMForestGetGradeFactor(dm,&factor);CHKERRQ(ierr);
15920e8089bSToby Isaac   ierr = DMForestSetGradeFactor(*tdm,factor);CHKERRQ(ierr);
1603e58adeeSToby Isaac   ierr = DMForestGetBaseCoordinateMapping(dm,&map,&mapCtx);CHKERRQ(ierr);
1615e8c540aSToby Isaac   ierr = DMForestSetBaseCoordinateMapping(*tdm,map,mapCtx);CHKERRQ(ierr);
162a0452a8eSToby Isaac   if (forest->ftemplate) {
16320e8089bSToby Isaac     ierr = (forest->ftemplate)(dm, *tdm);CHKERRQ(ierr);
164a0452a8eSToby Isaac   }
16520e8089bSToby Isaac   ierr = DMForestSetAdaptivityForest(*tdm,dm);CHKERRQ(ierr);
166e5e52638SMatthew G. Knepley   ierr = DMCopyDisc(dm,*tdm);CHKERRQ(ierr);
167795844e7SToby Isaac   ierr = DMGetApplicationContext(dm,&ctx);CHKERRQ(ierr);
168795844e7SToby Isaac   ierr = DMSetApplicationContext(*tdm,&ctx);CHKERRQ(ierr);
16990b157c4SStefano Zampini   {
17090b157c4SStefano Zampini     PetscBool            isper;
171795844e7SToby Isaac     const PetscReal      *maxCell, *L;
172795844e7SToby Isaac     const DMBoundaryType *bd;
173795844e7SToby Isaac 
17490b157c4SStefano Zampini     ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr);
17590b157c4SStefano Zampini     ierr = DMSetPeriodicity(*tdm,isper,maxCell,L,bd);CHKERRQ(ierr);
176795844e7SToby Isaac   }
177bff67a9bSToby Isaac   ierr = DMCopyBoundary(dm,*tdm);CHKERRQ(ierr);
17805e99e11SStefano Zampini   ierr = DMGetMatType(dm,&mtype);CHKERRQ(ierr);
17905e99e11SStefano Zampini   ierr = DMSetMatType(*tdm,mtype);CHKERRQ(ierr);
180a0452a8eSToby Isaac   PetscFunctionReturn(0);
181a0452a8eSToby Isaac }
182a0452a8eSToby Isaac 
18301d9d024SToby Isaac static PetscErrorCode DMInitialize_Forest(DM dm);
18401d9d024SToby Isaac 
185db4d5e8cSToby Isaac PETSC_EXTERN PetscErrorCode DMClone_Forest(DM dm, DM *newdm)
186db4d5e8cSToby Isaac {
187db4d5e8cSToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
188db4d5e8cSToby Isaac   const char     *type;
189db4d5e8cSToby Isaac   PetscErrorCode ierr;
190db4d5e8cSToby Isaac 
191db4d5e8cSToby Isaac   PetscFunctionBegin;
192db4d5e8cSToby Isaac   forest->refct++;
193db4d5e8cSToby Isaac   (*newdm)->data = forest;
194db4d5e8cSToby Isaac   ierr           = PetscObjectGetType((PetscObject) dm, &type);CHKERRQ(ierr);
195db4d5e8cSToby Isaac   ierr           = PetscObjectChangeTypeName((PetscObject) *newdm, type);CHKERRQ(ierr);
19601d9d024SToby Isaac   ierr           = DMInitialize_Forest(*newdm);CHKERRQ(ierr);
197db4d5e8cSToby Isaac   PetscFunctionReturn(0);
198db4d5e8cSToby Isaac }
199db4d5e8cSToby Isaac 
200d222f98bSToby Isaac static PetscErrorCode DMDestroy_Forest(DM dm)
201db4d5e8cSToby Isaac {
202db4d5e8cSToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
203db4d5e8cSToby Isaac   PetscErrorCode ierr;
204db4d5e8cSToby Isaac 
205db4d5e8cSToby Isaac   PetscFunctionBegin;
206db4d5e8cSToby Isaac   if (--forest->refct > 0) PetscFunctionReturn(0);
207d222f98bSToby Isaac   if (forest->destroy) {ierr = forest->destroy(dm);CHKERRQ(ierr);}
208db4d5e8cSToby Isaac   ierr = PetscSFDestroy(&forest->cellSF);CHKERRQ(ierr);
2090f17b9e3SToby Isaac   ierr = PetscSFDestroy(&forest->preCoarseToFine);CHKERRQ(ierr);
2100f17b9e3SToby Isaac   ierr = PetscSFDestroy(&forest->coarseToPreFine);CHKERRQ(ierr);
211a1b0c543SToby Isaac   ierr = DMLabelDestroy(&forest->adaptLabel);CHKERRQ(ierr);
2129a81d013SToby Isaac   ierr = PetscFree(forest->adaptStrategy);CHKERRQ(ierr);
21356ba9f64SToby Isaac   ierr = DMDestroy(&forest->base);CHKERRQ(ierr);
214ba936b91SToby Isaac   ierr = DMDestroy(&forest->adapt);CHKERRQ(ierr);
21530f902e7SToby Isaac   ierr = PetscFree(forest->topology);CHKERRQ(ierr);
21630f902e7SToby Isaac   ierr = PetscFree(forest);CHKERRQ(ierr);
217db4d5e8cSToby Isaac   PetscFunctionReturn(0);
218db4d5e8cSToby Isaac }
219db4d5e8cSToby Isaac 
2209be51f97SToby Isaac /*@C
2219be51f97SToby Isaac   DMForestSetTopology - Set the topology of a DMForest during the pre-setup phase.  The topology is a string (e.g.
22268d54884SBarry Smith   "cube", "shell") and can be interpreted by subtypes of DMFOREST) to construct the base DM of a forest during
2239be51f97SToby Isaac   DMSetUp().
2249be51f97SToby Isaac 
2259be51f97SToby Isaac   Logically collective on dm
2269be51f97SToby Isaac 
2279be51f97SToby Isaac   Input parameters:
2289be51f97SToby Isaac + dm - the forest
2299be51f97SToby Isaac - topology - the topology of the forest
2309be51f97SToby Isaac 
2319be51f97SToby Isaac   Level: intermediate
2329be51f97SToby Isaac 
2339be51f97SToby Isaac .seealso(): DMForestGetTopology(), DMForestSetBaseDM()
2349be51f97SToby Isaac @*/
235dd8e54a2SToby Isaac PetscErrorCode DMForestSetTopology(DM dm, DMForestTopology topology)
236db4d5e8cSToby Isaac {
237db4d5e8cSToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
238db4d5e8cSToby Isaac   PetscErrorCode ierr;
239db4d5e8cSToby Isaac 
240db4d5e8cSToby Isaac   PetscFunctionBegin;
241db4d5e8cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
242ef51cf95SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the topology after setup");
243dd8e54a2SToby Isaac   ierr = PetscFree(forest->topology);CHKERRQ(ierr);
244dd8e54a2SToby Isaac   ierr = PetscStrallocpy((const char*)topology,(char**) &forest->topology);CHKERRQ(ierr);
245db4d5e8cSToby Isaac   PetscFunctionReturn(0);
246db4d5e8cSToby Isaac }
247db4d5e8cSToby Isaac 
2489be51f97SToby Isaac /*@C
2499be51f97SToby Isaac   DMForestGetTopology - Get a string describing the topology of a DMForest.
2509be51f97SToby Isaac 
2519be51f97SToby Isaac   Not collective
2529be51f97SToby Isaac 
2539be51f97SToby Isaac   Input parameter:
2549be51f97SToby Isaac . dm - the forest
2559be51f97SToby Isaac 
2569be51f97SToby Isaac   Output parameter:
2579be51f97SToby Isaac . topology - the topology of the forest (e.g., 'cube', 'shell')
2589be51f97SToby Isaac 
2599be51f97SToby Isaac   Level: intermediate
2609be51f97SToby Isaac 
2619be51f97SToby Isaac .seealso: DMForestSetTopology()
2629be51f97SToby Isaac @*/
263dd8e54a2SToby Isaac PetscErrorCode DMForestGetTopology(DM dm, DMForestTopology *topology)
264dd8e54a2SToby Isaac {
265dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
266dd8e54a2SToby Isaac 
267dd8e54a2SToby Isaac   PetscFunctionBegin;
268dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
269dd8e54a2SToby Isaac   PetscValidPointer(topology,2);
270dd8e54a2SToby Isaac   *topology = forest->topology;
271dd8e54a2SToby Isaac   PetscFunctionReturn(0);
272dd8e54a2SToby Isaac }
273dd8e54a2SToby Isaac 
2749be51f97SToby Isaac /*@
2759be51f97SToby Isaac   DMForestSetBaseDM - During the pre-setup phase, set the DM that defines the base mesh of a DMForest forest.  The
2769be51f97SToby Isaac   forest will be hierarchically refined from the base, and all refinements/coarsenings of the forest will share its
277765b024eSBarry Smith   base.  In general, two forest must share a base to be comparable, to do things like construct interpolators.
2789be51f97SToby Isaac 
2799be51f97SToby Isaac   Logically collective on dm
2809be51f97SToby Isaac 
2819be51f97SToby Isaac   Input Parameters:
2829be51f97SToby Isaac + dm - the forest
2839be51f97SToby Isaac - base - the base DM of the forest
2849be51f97SToby Isaac 
28595452b02SPatrick Sanan   Notes:
28695452b02SPatrick Sanan     Currently the base DM must be a DMPLEX
287765b024eSBarry Smith 
2889be51f97SToby Isaac   Level: intermediate
2899be51f97SToby Isaac 
2909be51f97SToby Isaac .seealso(): DMForestGetBaseDM()
2919be51f97SToby Isaac @*/
292dd8e54a2SToby Isaac PetscErrorCode DMForestSetBaseDM(DM dm, DM base)
293dd8e54a2SToby Isaac {
294dd8e54a2SToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
295dd8e54a2SToby Isaac   PetscInt       dim, dimEmbed;
296dd8e54a2SToby Isaac   PetscErrorCode ierr;
297dd8e54a2SToby Isaac 
298dd8e54a2SToby Isaac   PetscFunctionBegin;
299dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
300ef51cf95SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the base after setup");
301dd8e54a2SToby Isaac   ierr         = PetscObjectReference((PetscObject)base);CHKERRQ(ierr);
302dd8e54a2SToby Isaac   ierr         = DMDestroy(&forest->base);CHKERRQ(ierr);
303dd8e54a2SToby Isaac   forest->base = base;
304a0452a8eSToby Isaac   if (base) {
30528dfcf7cSStefano Zampini     PetscBool        isper;
30628dfcf7cSStefano Zampini     const PetscReal *maxCell, *L;
30728dfcf7cSStefano Zampini     const DMBoundaryType *bd;
30828dfcf7cSStefano Zampini 
309a0452a8eSToby Isaac     PetscValidHeaderSpecific(base, DM_CLASSID, 2);
310dd8e54a2SToby Isaac     ierr = DMGetDimension(base,&dim);CHKERRQ(ierr);
311dd8e54a2SToby Isaac     ierr = DMSetDimension(dm,dim);CHKERRQ(ierr);
312dd8e54a2SToby Isaac     ierr = DMGetCoordinateDim(base,&dimEmbed);CHKERRQ(ierr);
313dd8e54a2SToby Isaac     ierr = DMSetCoordinateDim(dm,dimEmbed);CHKERRQ(ierr);
31428dfcf7cSStefano Zampini     ierr = DMGetPeriodicity(base,&isper,&maxCell,&L,&bd);CHKERRQ(ierr);
31528dfcf7cSStefano Zampini     ierr = DMSetPeriodicity(dm,isper,maxCell,L,bd);CHKERRQ(ierr);
31628dfcf7cSStefano Zampini   } else {
31728dfcf7cSStefano Zampini     ierr = DMSetPeriodicity(dm,PETSC_FALSE,NULL,NULL,NULL);CHKERRQ(ierr);
318a0452a8eSToby Isaac   }
319dd8e54a2SToby Isaac   PetscFunctionReturn(0);
320dd8e54a2SToby Isaac }
321dd8e54a2SToby Isaac 
3229be51f97SToby Isaac /*@
3239be51f97SToby Isaac   DMForestGetBaseDM - Get the base DM of a DMForest forest.  The forest will be hierarchically refined from the base,
32468d54884SBarry Smith   and all refinements/coarsenings of the forest will share its base.  In general, two forest must share a base to be
3259be51f97SToby Isaac   comparable, to do things like construct interpolators.
3269be51f97SToby Isaac 
3279be51f97SToby Isaac   Not collective
3289be51f97SToby Isaac 
3299be51f97SToby Isaac   Input Parameter:
3309be51f97SToby Isaac . dm - the forest
3319be51f97SToby Isaac 
3329be51f97SToby Isaac   Output Parameter:
3339be51f97SToby Isaac . base - the base DM of the forest
3349be51f97SToby Isaac 
335367003a6SStefano Zampini   Notes:
336367003a6SStefano Zampini     After DMSetUp(), the base DM will be redundantly distributed across MPI processes
337367003a6SStefano Zampini 
3389be51f97SToby Isaac   Level: intermediate
3399be51f97SToby Isaac 
3409be51f97SToby Isaac .seealso(); DMForestSetBaseDM()
3419be51f97SToby Isaac @*/
342dd8e54a2SToby Isaac PetscErrorCode DMForestGetBaseDM(DM dm, DM *base)
343dd8e54a2SToby Isaac {
344dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
345dd8e54a2SToby Isaac 
346dd8e54a2SToby Isaac   PetscFunctionBegin;
347dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
348dd8e54a2SToby Isaac   PetscValidPointer(base, 2);
349dd8e54a2SToby Isaac   *base = forest->base;
350dd8e54a2SToby Isaac   PetscFunctionReturn(0);
351dd8e54a2SToby Isaac }
352dd8e54a2SToby Isaac 
35399478f86SToby Isaac PetscErrorCode DMForestSetBaseCoordinateMapping(DM dm, PetscErrorCode (*func)(DM,PetscInt,PetscInt,const PetscReal [],PetscReal [],void*),void *ctx)
354cf38a08cSToby Isaac {
355cf38a08cSToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
356cf38a08cSToby Isaac 
357cf38a08cSToby Isaac   PetscFunctionBegin;
358cf38a08cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
359cf38a08cSToby Isaac   forest->mapcoordinates    = func;
360cf38a08cSToby Isaac   forest->mapcoordinatesctx = ctx;
361cf38a08cSToby Isaac   PetscFunctionReturn(0);
362cf38a08cSToby Isaac }
363cf38a08cSToby Isaac 
36499478f86SToby Isaac PetscErrorCode DMForestGetBaseCoordinateMapping(DM dm, PetscErrorCode (**func) (DM,PetscInt,PetscInt,const PetscReal [],PetscReal [],void*),void *ctx)
365cf38a08cSToby Isaac {
366cf38a08cSToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
367cf38a08cSToby Isaac 
368cf38a08cSToby Isaac   PetscFunctionBegin;
369cf38a08cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
370cf38a08cSToby Isaac   if (func) *func = forest->mapcoordinates;
371cf38a08cSToby Isaac   if (ctx) *((void**) ctx) = forest->mapcoordinatesctx;
372cf38a08cSToby Isaac   PetscFunctionReturn(0);
373cf38a08cSToby Isaac }
374cf38a08cSToby Isaac 
3759be51f97SToby Isaac /*@
3769be51f97SToby Isaac   DMForestSetAdaptivityForest - During the pre-setup phase, set the forest from which the current forest will be
3779be51f97SToby Isaac   adapted (e.g., the current forest will be refined/coarsened/repartitioned from it) im DMSetUp().  Usually not needed
3789be51f97SToby Isaac   by users directly: DMForestTemplate() constructs a new forest to be adapted from an old forest and calls this
3799be51f97SToby Isaac   routine.
3809be51f97SToby Isaac 
381dffe73a3SToby Isaac   Note that this can be called after setup with adapt = NULL, which will clear all internal data related to the
382dffe73a3SToby Isaac   adaptivity forest from dm.  This way, repeatedly adapting does not leave stale DM objects in memory.
383dffe73a3SToby Isaac 
3849be51f97SToby Isaac   Logically collective on dm
3859be51f97SToby Isaac 
3869be51f97SToby Isaac   Input Parameter:
3879be51f97SToby Isaac + dm - the new forest, which will be constructed from adapt
3889be51f97SToby Isaac - adapt - the old forest
3899be51f97SToby Isaac 
3909be51f97SToby Isaac   Level: intermediate
3919be51f97SToby Isaac 
3929be51f97SToby Isaac .seealso: DMForestGetAdaptivityForest(), DMForestSetAdaptivityPurpose()
3939be51f97SToby Isaac @*/
394ba936b91SToby Isaac PetscErrorCode DMForestSetAdaptivityForest(DM dm,DM adapt)
395dd8e54a2SToby Isaac {
396dffe73a3SToby Isaac   DM_Forest      *forest, *adaptForest, *oldAdaptForest;
397dffe73a3SToby Isaac   DM             oldAdapt;
398456cc5b7SMatthew G. Knepley   PetscBool      isForest;
399dd8e54a2SToby Isaac   PetscErrorCode ierr;
400dd8e54a2SToby Isaac 
401dd8e54a2SToby Isaac   PetscFunctionBegin;
402dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
403ba936b91SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
404456cc5b7SMatthew G. Knepley   ierr = DMIsForest(dm, &isForest);CHKERRQ(ierr);
405456cc5b7SMatthew G. Knepley   if (!isForest) PetscFunctionReturn(0);
406ba936b91SToby Isaac   forest   = (DM_Forest*) dm->data;
407dffe73a3SToby Isaac   ierr     = DMForestGetAdaptivityForest(dm,&oldAdapt);CHKERRQ(ierr);
408dffe73a3SToby Isaac   if (adapt != NULL && dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the adaptation forest after setup");
409193eb951SToby Isaac   adaptForest    = (DM_Forest*) (adapt ? adapt->data : NULL);
410193eb951SToby Isaac   oldAdaptForest = (DM_Forest*) (oldAdapt ? oldAdapt->data : NULL);
411dffe73a3SToby Isaac   if (adaptForest != oldAdaptForest) {
412dffe73a3SToby Isaac     ierr = PetscSFDestroy(&forest->preCoarseToFine);CHKERRQ(ierr);
413dffe73a3SToby Isaac     ierr = PetscSFDestroy(&forest->coarseToPreFine);CHKERRQ(ierr);
414dffe73a3SToby Isaac     if (forest->clearadaptivityforest) {ierr = (forest->clearadaptivityforest)(dm);CHKERRQ(ierr);}
415dffe73a3SToby Isaac   }
41626d9498aSToby Isaac   switch (forest->adaptPurpose) {
417cd3c525cSToby Isaac   case DM_ADAPT_DETERMINE:
418ba936b91SToby Isaac     ierr          = PetscObjectReference((PetscObject)adapt);CHKERRQ(ierr);
419ba936b91SToby Isaac     ierr          = DMDestroy(&(forest->adapt));CHKERRQ(ierr);
420ba936b91SToby Isaac     forest->adapt = adapt;
42126d9498aSToby Isaac     break;
422a1b0c543SToby Isaac   case DM_ADAPT_REFINE:
42326d9498aSToby Isaac     ierr = DMSetCoarseDM(dm,adapt);CHKERRQ(ierr);
42426d9498aSToby Isaac     break;
425a1b0c543SToby Isaac   case DM_ADAPT_COARSEN:
426bf2d5fbbSStefano Zampini   case DM_ADAPT_COARSEN_LAST:
42726d9498aSToby Isaac     ierr = DMSetFineDM(dm,adapt);CHKERRQ(ierr);
42826d9498aSToby Isaac     break;
42926d9498aSToby Isaac   default:
43026d9498aSToby Isaac     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid adaptivity purpose");
43126d9498aSToby Isaac   }
432dd8e54a2SToby Isaac   PetscFunctionReturn(0);
433dd8e54a2SToby Isaac }
434dd8e54a2SToby Isaac 
4359be51f97SToby Isaac /*@
4369be51f97SToby Isaac   DMForestGetAdaptivityForest - Get the forest from which the current forest is adapted.
4379be51f97SToby Isaac 
4389be51f97SToby Isaac   Not collective
4399be51f97SToby Isaac 
4409be51f97SToby Isaac   Input Parameter:
4419be51f97SToby Isaac . dm - the forest
4429be51f97SToby Isaac 
4439be51f97SToby Isaac   Output Parameter:
4449be51f97SToby Isaac . adapt - the forest from which dm is/was adapted
4459be51f97SToby Isaac 
4469be51f97SToby Isaac   Level: intermediate
4479be51f97SToby Isaac 
4489be51f97SToby Isaac .seealso: DMForestSetAdaptivityForest(), DMForestSetAdaptivityPurpose()
4499be51f97SToby Isaac @*/
450ba936b91SToby Isaac PetscErrorCode DMForestGetAdaptivityForest(DM dm, DM *adapt)
451dd8e54a2SToby Isaac {
452ba936b91SToby Isaac   DM_Forest      *forest;
45326d9498aSToby Isaac   PetscErrorCode ierr;
454dd8e54a2SToby Isaac 
455dd8e54a2SToby Isaac   PetscFunctionBegin;
456dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
457ba936b91SToby Isaac   forest = (DM_Forest*) dm->data;
45826d9498aSToby Isaac   switch (forest->adaptPurpose) {
459cd3c525cSToby Isaac   case DM_ADAPT_DETERMINE:
460ba936b91SToby Isaac     *adapt = forest->adapt;
46126d9498aSToby Isaac     break;
462a1b0c543SToby Isaac   case DM_ADAPT_REFINE:
46326d9498aSToby Isaac     ierr = DMGetCoarseDM(dm,adapt);CHKERRQ(ierr);
46426d9498aSToby Isaac     break;
465a1b0c543SToby Isaac   case DM_ADAPT_COARSEN:
466bf2d5fbbSStefano Zampini   case DM_ADAPT_COARSEN_LAST:
46726d9498aSToby Isaac     ierr = DMGetFineDM(dm,adapt);CHKERRQ(ierr);
46826d9498aSToby Isaac     break;
46926d9498aSToby Isaac   default:
47026d9498aSToby Isaac     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid adaptivity purpose");
47126d9498aSToby Isaac   }
47226d9498aSToby Isaac   PetscFunctionReturn(0);
47326d9498aSToby Isaac }
47426d9498aSToby Isaac 
4759be51f97SToby Isaac /*@
4769be51f97SToby Isaac   DMForestSetAdaptivityPurpose - During the pre-setup phase, set whether the current DM is being adapted from its
477a1b0c543SToby Isaac   source (set with DMForestSetAdaptivityForest()) for the purpose of refinement (DM_ADAPT_REFINE), coarsening
478cd3c525cSToby Isaac   (DM_ADAPT_COARSEN), or undefined (DM_ADAPT_DETERMINE).  This only matters for the purposes of reference counting:
4799be51f97SToby Isaac   during DMDestroy(), cyclic references can be found between DMs only if the cyclic reference is due to a fine/coarse
4809be51f97SToby Isaac   relationship (see DMSetFineDM()/DMSetCoarseDM()).  If the purpose is not refinement or coarsening, and the user does
4819be51f97SToby Isaac   not maintain a reference to the post-adaptation forest (i.e., the one created by DMForestTemplate()), then this can
4829be51f97SToby Isaac   cause a memory leak.  This method is used by subtypes of DMForest when automatically constructing mesh hierarchies.
4839be51f97SToby Isaac 
4849be51f97SToby Isaac   Logically collective on dm
4859be51f97SToby Isaac 
4869be51f97SToby Isaac   Input Parameters:
4879be51f97SToby Isaac + dm - the forest
488bf2d5fbbSStefano Zampini - purpose - the adaptivity purpose
4899be51f97SToby Isaac 
4909be51f97SToby Isaac   Level: advanced
4919be51f97SToby Isaac 
492bf2d5fbbSStefano Zampini .seealso: DMForestTemplate(), DMForestSetAdaptivityForest(), DMForestGetAdaptivityForest(), DMAdaptFlag
4939be51f97SToby Isaac @*/
494a1b0c543SToby Isaac PetscErrorCode DMForestSetAdaptivityPurpose(DM dm, DMAdaptFlag purpose)
49526d9498aSToby Isaac {
49626d9498aSToby Isaac   DM_Forest      *forest;
49726d9498aSToby Isaac   PetscErrorCode ierr;
49826d9498aSToby Isaac 
49926d9498aSToby Isaac   PetscFunctionBegin;
50026d9498aSToby Isaac   forest = (DM_Forest*) dm->data;
5019be51f97SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the adaptation forest after setup");
50226d9498aSToby Isaac   if (purpose != forest->adaptPurpose) {
50326d9498aSToby Isaac     DM adapt;
50426d9498aSToby Isaac 
50526d9498aSToby Isaac     ierr = DMForestGetAdaptivityForest(dm,&adapt);CHKERRQ(ierr);
50626d9498aSToby Isaac     ierr = PetscObjectReference((PetscObject)adapt);CHKERRQ(ierr);
50726d9498aSToby Isaac     ierr = DMForestSetAdaptivityForest(dm,NULL);CHKERRQ(ierr);
508f885a11aSToby Isaac 
50926d9498aSToby Isaac     forest->adaptPurpose = purpose;
510f885a11aSToby Isaac 
51126d9498aSToby Isaac     ierr = DMForestSetAdaptivityForest(dm,adapt);CHKERRQ(ierr);
51226d9498aSToby Isaac     ierr = DMDestroy(&adapt);CHKERRQ(ierr);
51326d9498aSToby Isaac   }
514dd8e54a2SToby Isaac   PetscFunctionReturn(0);
515dd8e54a2SToby Isaac }
516dd8e54a2SToby Isaac 
51756c0450aSToby Isaac /*@
51856c0450aSToby Isaac   DMForestGetAdaptivityPurpose - Get whether the current DM is being adapted from its source (set with
519bf2d5fbbSStefano Zampini   DMForestSetAdaptivityForest()) for the purpose of refinement (DM_ADAPT_REFINE), coarsening (DM_ADAPT_COARSEN),
520bf2d5fbbSStefano Zampini   coarsening only the last level (DM_ADAPT_COARSEN_LAST) or undefined (DM_ADAPT_DETERMINE).
521bf2d5fbbSStefano Zampini   This only matters for the purposes of reference counting: during DMDestroy(), cyclic
52256c0450aSToby Isaac   references can be found between DMs only if the cyclic reference is due to a fine/coarse relationship (see
52356c0450aSToby Isaac   DMSetFineDM()/DMSetCoarseDM()).  If the purpose is not refinement or coarsening, and the user does not maintain a
52456c0450aSToby Isaac   reference to the post-adaptation forest (i.e., the one created by DMForestTemplate()), then this can cause a memory
52556c0450aSToby Isaac   leak.  This method is used by subtypes of DMForest when automatically constructing mesh hierarchies.
52656c0450aSToby Isaac 
52756c0450aSToby Isaac   Not collective
52856c0450aSToby Isaac 
52956c0450aSToby Isaac   Input Parameter:
53056c0450aSToby Isaac . dm - the forest
53156c0450aSToby Isaac 
53256c0450aSToby Isaac   Output Parameter:
533bf2d5fbbSStefano Zampini . purpose - the adaptivity purpose
53456c0450aSToby Isaac 
53556c0450aSToby Isaac   Level: advanced
53656c0450aSToby Isaac 
537bf2d5fbbSStefano Zampini .seealso: DMForestTemplate(), DMForestSetAdaptivityForest(), DMForestGetAdaptivityForest(), DMAdaptFlag
53856c0450aSToby Isaac @*/
539a1b0c543SToby Isaac PetscErrorCode DMForestGetAdaptivityPurpose(DM dm, DMAdaptFlag *purpose)
54056c0450aSToby Isaac {
54156c0450aSToby Isaac   DM_Forest *forest;
54256c0450aSToby Isaac 
54356c0450aSToby Isaac   PetscFunctionBegin;
54456c0450aSToby Isaac   forest   = (DM_Forest*) dm->data;
54556c0450aSToby Isaac   *purpose = forest->adaptPurpose;
54656c0450aSToby Isaac   PetscFunctionReturn(0);
54756c0450aSToby Isaac }
54856c0450aSToby Isaac 
5499be51f97SToby Isaac /*@
5509be51f97SToby Isaac   DMForestSetAdjacencyDimension - During the pre-setup phase, set the dimension of interface points that determine
5519be51f97SToby Isaac   cell adjacency (for the purposes of partitioning and overlap).
5529be51f97SToby Isaac 
5539be51f97SToby Isaac   Logically collective on dm
5549be51f97SToby Isaac 
5559be51f97SToby Isaac   Input Parameters:
5569be51f97SToby Isaac + dm - the forest
5579be51f97SToby Isaac - adjDim - default 0 (i.e., vertices determine adjacency)
5589be51f97SToby Isaac 
5599be51f97SToby Isaac   Level: intermediate
5609be51f97SToby Isaac 
5619be51f97SToby Isaac .seealso: DMForestGetAdjacencyDimension(), DMForestSetAdjacencyCodimension(), DMForestSetPartitionOverlap()
5629be51f97SToby Isaac @*/
563dd8e54a2SToby Isaac PetscErrorCode DMForestSetAdjacencyDimension(DM dm, PetscInt adjDim)
564dd8e54a2SToby Isaac {
565dd8e54a2SToby Isaac   PetscInt       dim;
566dd8e54a2SToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
567dd8e54a2SToby Isaac   PetscErrorCode ierr;
568dd8e54a2SToby Isaac 
569dd8e54a2SToby Isaac   PetscFunctionBegin;
570dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
571ef51cf95SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the adjacency dimension after setup");
572dd8e54a2SToby Isaac   if (adjDim < 0) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"adjacency dim cannot be < 0: %d", adjDim);
573dd8e54a2SToby Isaac   ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
574dd8e54a2SToby Isaac   if (adjDim > dim) SETERRQ2(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"adjacency dim cannot be > %d: %d", dim, adjDim);
575dd8e54a2SToby Isaac   forest->adjDim = adjDim;
576dd8e54a2SToby Isaac   PetscFunctionReturn(0);
577dd8e54a2SToby Isaac }
578dd8e54a2SToby Isaac 
5799be51f97SToby Isaac /*@
5809be51f97SToby Isaac   DMForestSetAdjacencyCodimension - Like DMForestSetAdjacencyDimension(), but specified as a co-dimension (so that,
5819be51f97SToby Isaac   e.g., adjacency based on facets can be specified by codimension 1 in all cases)
5829be51f97SToby Isaac 
5839be51f97SToby Isaac   Logically collective on dm
5849be51f97SToby Isaac 
5859be51f97SToby Isaac   Input Parameters:
5869be51f97SToby Isaac + dm - the forest
5879be51f97SToby Isaac - adjCodim - default isthe dimension of the forest (see DMGetDimension()), since this is the codimension of vertices
5889be51f97SToby Isaac 
5899be51f97SToby Isaac   Level: intermediate
5909be51f97SToby Isaac 
5919be51f97SToby Isaac .seealso: DMForestGetAdjacencyCodimension(), DMForestSetAdjacencyDimension()
5929be51f97SToby Isaac @*/
593dd8e54a2SToby Isaac PetscErrorCode DMForestSetAdjacencyCodimension(DM dm, PetscInt adjCodim)
594dd8e54a2SToby Isaac {
595dd8e54a2SToby Isaac   PetscInt       dim;
596dd8e54a2SToby Isaac   PetscErrorCode ierr;
597dd8e54a2SToby Isaac 
598dd8e54a2SToby Isaac   PetscFunctionBegin;
599dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
600dd8e54a2SToby Isaac   ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr);
601dd8e54a2SToby Isaac   ierr = DMForestSetAdjacencyDimension(dm,dim-adjCodim);CHKERRQ(ierr);
602dd8e54a2SToby Isaac   PetscFunctionReturn(0);
603dd8e54a2SToby Isaac }
604dd8e54a2SToby Isaac 
6059be51f97SToby Isaac /*@
6069be51f97SToby Isaac   DMForestGetAdjacencyDimension - Get the dimension of interface points that determine cell adjacency (for the
6079be51f97SToby Isaac   purposes of partitioning and overlap).
6089be51f97SToby Isaac 
6099be51f97SToby Isaac   Not collective
6109be51f97SToby Isaac 
6119be51f97SToby Isaac   Input Parameter:
6129be51f97SToby Isaac . dm - the forest
6139be51f97SToby Isaac 
6149be51f97SToby Isaac   Output Parameter:
6159be51f97SToby Isaac . adjDim - default 0 (i.e., vertices determine adjacency)
6169be51f97SToby Isaac 
6179be51f97SToby Isaac   Level: intermediate
6189be51f97SToby Isaac 
6199be51f97SToby Isaac .seealso: DMForestSetAdjacencyDimension(), DMForestGetAdjacencyCodimension(), DMForestSetPartitionOverlap()
6209be51f97SToby Isaac @*/
621dd8e54a2SToby Isaac PetscErrorCode DMForestGetAdjacencyDimension(DM dm, PetscInt *adjDim)
622dd8e54a2SToby Isaac {
623dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
624dd8e54a2SToby Isaac 
625dd8e54a2SToby Isaac   PetscFunctionBegin;
626dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
627dd8e54a2SToby Isaac   PetscValidIntPointer(adjDim,2);
628dd8e54a2SToby Isaac   *adjDim = forest->adjDim;
629dd8e54a2SToby Isaac   PetscFunctionReturn(0);
630dd8e54a2SToby Isaac }
631dd8e54a2SToby Isaac 
6329be51f97SToby Isaac /*@
6339be51f97SToby Isaac   DMForestGetAdjacencyCodimension - Like DMForestGetAdjacencyDimension(), but specified as a co-dimension (so that,
6349be51f97SToby Isaac   e.g., adjacency based on facets can be specified by codimension 1 in all cases)
6359be51f97SToby Isaac 
6369be51f97SToby Isaac   Not collective
6379be51f97SToby Isaac 
6389be51f97SToby Isaac   Input Parameter:
6399be51f97SToby Isaac . dm - the forest
6409be51f97SToby Isaac 
6419be51f97SToby Isaac   Output Parameter:
6429be51f97SToby Isaac . adjCodim - default isthe dimension of the forest (see DMGetDimension()), since this is the codimension of vertices
6439be51f97SToby Isaac 
6449be51f97SToby Isaac   Level: intermediate
6459be51f97SToby Isaac 
6469be51f97SToby Isaac .seealso: DMForestSetAdjacencyCodimension(), DMForestGetAdjacencyDimension()
6479be51f97SToby Isaac @*/
648dd8e54a2SToby Isaac PetscErrorCode DMForestGetAdjacencyCodimension(DM dm, PetscInt *adjCodim)
649dd8e54a2SToby Isaac {
650dd8e54a2SToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
651dd8e54a2SToby Isaac   PetscInt       dim;
652dd8e54a2SToby Isaac   PetscErrorCode ierr;
653dd8e54a2SToby Isaac 
654dd8e54a2SToby Isaac   PetscFunctionBegin;
655dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
656dd8e54a2SToby Isaac   PetscValidIntPointer(adjCodim,2);
657dd8e54a2SToby Isaac   ierr      = DMGetDimension(dm,&dim);CHKERRQ(ierr);
658dd8e54a2SToby Isaac   *adjCodim = dim - forest->adjDim;
659dd8e54a2SToby Isaac   PetscFunctionReturn(0);
660dd8e54a2SToby Isaac }
661dd8e54a2SToby Isaac 
6629be51f97SToby Isaac /*@
6639be51f97SToby Isaac   DMForestSetPartitionOverlap - During the pre-setup phase, set the amount of cell-overlap present in parallel
6649be51f97SToby Isaac   partitions of a forest, with values > 0 indicating subdomains that are expanded by that many iterations of adding
6659be51f97SToby Isaac   adjacent cells
6669be51f97SToby Isaac 
6679be51f97SToby Isaac   Logically collective on dm
6689be51f97SToby Isaac 
6699be51f97SToby Isaac   Input Parameters:
6709be51f97SToby Isaac + dm - the forest
6719be51f97SToby Isaac - overlap - default 0
6729be51f97SToby Isaac 
6739be51f97SToby Isaac   Level: intermediate
6749be51f97SToby Isaac 
6759be51f97SToby Isaac .seealso: DMForestGetPartitionOverlap(), DMForestSetAdjacencyDimension(), DMForestSetAdjacencyCodimension()
6769be51f97SToby Isaac @*/
677dd8e54a2SToby Isaac PetscErrorCode DMForestSetPartitionOverlap(DM dm, PetscInt overlap)
678dd8e54a2SToby Isaac {
679dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
680dd8e54a2SToby Isaac 
681dd8e54a2SToby Isaac   PetscFunctionBegin;
682dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
683ef51cf95SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the overlap after setup");
684dd8e54a2SToby Isaac   if (overlap < 0) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"overlap cannot be < 0: %d", overlap);
685dd8e54a2SToby Isaac   forest->overlap = overlap;
686dd8e54a2SToby Isaac   PetscFunctionReturn(0);
687dd8e54a2SToby Isaac }
688dd8e54a2SToby Isaac 
6899be51f97SToby Isaac /*@
6909be51f97SToby Isaac   DMForestGetPartitionOverlap - Get the amount of cell-overlap present in parallel partitions of a forest, with values
6919be51f97SToby Isaac   > 0 indicating subdomains that are expanded by that many iterations of adding adjacent cells
6929be51f97SToby Isaac 
6939be51f97SToby Isaac   Not collective
6949be51f97SToby Isaac 
6959be51f97SToby Isaac   Input Parameter:
6969be51f97SToby Isaac . dm - the forest
6979be51f97SToby Isaac 
6989be51f97SToby Isaac   Output Parameter:
6999be51f97SToby Isaac . overlap - default 0
7009be51f97SToby Isaac 
7019be51f97SToby Isaac   Level: intermediate
7029be51f97SToby Isaac 
7039be51f97SToby Isaac .seealso: DMForestGetPartitionOverlap(), DMForestSetAdjacencyDimension(), DMForestSetAdjacencyCodimension()
7049be51f97SToby Isaac @*/
705dd8e54a2SToby Isaac PetscErrorCode DMForestGetPartitionOverlap(DM dm, PetscInt *overlap)
706dd8e54a2SToby Isaac {
707dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
708dd8e54a2SToby Isaac 
709dd8e54a2SToby Isaac   PetscFunctionBegin;
710dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
711dd8e54a2SToby Isaac   PetscValidIntPointer(overlap,2);
712dd8e54a2SToby Isaac   *overlap = forest->overlap;
713dd8e54a2SToby Isaac   PetscFunctionReturn(0);
714dd8e54a2SToby Isaac }
715dd8e54a2SToby Isaac 
7169be51f97SToby Isaac /*@
7179be51f97SToby Isaac   DMForestSetMinimumRefinement - During the pre-setup phase, set the minimum level of refinement (relative to the base
7189be51f97SToby Isaac   DM, see DMForestGetBaseDM()) allowed in the forest.  If the forest is being created by coarsening a previous forest
7199be51f97SToby Isaac   (see DMForestGetAdaptivityForest()) this limits the amount of coarsening.
7209be51f97SToby Isaac 
7219be51f97SToby Isaac   Logically collective on dm
7229be51f97SToby Isaac 
7239be51f97SToby Isaac   Input Parameters:
7249be51f97SToby Isaac + dm - the forest
7259be51f97SToby Isaac - minRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest)
7269be51f97SToby Isaac 
7279be51f97SToby Isaac   Level: intermediate
7289be51f97SToby Isaac 
7299be51f97SToby Isaac .seealso: DMForestGetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestSetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityForest()
7309be51f97SToby Isaac @*/
731dd8e54a2SToby Isaac PetscErrorCode DMForestSetMinimumRefinement(DM dm, PetscInt minRefinement)
732dd8e54a2SToby Isaac {
733dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
734dd8e54a2SToby Isaac 
735dd8e54a2SToby Isaac   PetscFunctionBegin;
736dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
737ef51cf95SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the minimum refinement after setup");
738dd8e54a2SToby Isaac   forest->minRefinement = minRefinement;
739dd8e54a2SToby Isaac   PetscFunctionReturn(0);
740dd8e54a2SToby Isaac }
741dd8e54a2SToby Isaac 
7429be51f97SToby Isaac /*@
7439be51f97SToby Isaac   DMForestGetMinimumRefinement - Get the minimum level of refinement (relative to the base DM, see
7449be51f97SToby Isaac   DMForestGetBaseDM()) allowed in the forest.  If the forest is being created by coarsening a previous forest (see
7459be51f97SToby Isaac   DMForestGetAdaptivityForest()), this limits the amount of coarsening.
7469be51f97SToby Isaac 
7479be51f97SToby Isaac   Not collective
7489be51f97SToby Isaac 
7499be51f97SToby Isaac   Input Parameter:
7509be51f97SToby Isaac . dm - the forest
7519be51f97SToby Isaac 
7529be51f97SToby Isaac   Output Parameter:
7539be51f97SToby Isaac . minRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest)
7549be51f97SToby Isaac 
7559be51f97SToby Isaac   Level: intermediate
7569be51f97SToby Isaac 
7579be51f97SToby Isaac .seealso: DMForestSetMinimumRefinement(), DMForestGetMaximumRefinement(), DMForestGetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityForest()
7589be51f97SToby Isaac @*/
759dd8e54a2SToby Isaac PetscErrorCode DMForestGetMinimumRefinement(DM dm, PetscInt *minRefinement)
760dd8e54a2SToby Isaac {
761dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
762dd8e54a2SToby Isaac 
763dd8e54a2SToby Isaac   PetscFunctionBegin;
764dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
765dd8e54a2SToby Isaac   PetscValidIntPointer(minRefinement,2);
766dd8e54a2SToby Isaac   *minRefinement = forest->minRefinement;
767dd8e54a2SToby Isaac   PetscFunctionReturn(0);
768dd8e54a2SToby Isaac }
769dd8e54a2SToby Isaac 
7709be51f97SToby Isaac /*@
7719be51f97SToby Isaac   DMForestSetInitialRefinement - During the pre-setup phase, set the initial level of refinement (relative to the base
7729be51f97SToby Isaac   DM, see DMForestGetBaseDM()) allowed in the forest.
7739be51f97SToby Isaac 
7749be51f97SToby Isaac   Logically collective on dm
7759be51f97SToby Isaac 
7769be51f97SToby Isaac   Input Parameters:
7779be51f97SToby Isaac + dm - the forest
7789be51f97SToby Isaac - initefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest)
7799be51f97SToby Isaac 
7809be51f97SToby Isaac   Level: intermediate
7819be51f97SToby Isaac 
7829be51f97SToby Isaac .seealso: DMForestSetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestGetBaseDM()
7839be51f97SToby Isaac @*/
78456ba9f64SToby Isaac PetscErrorCode DMForestSetInitialRefinement(DM dm, PetscInt initRefinement)
78556ba9f64SToby Isaac {
78656ba9f64SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
78756ba9f64SToby Isaac 
78856ba9f64SToby Isaac   PetscFunctionBegin;
78956ba9f64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
79056ba9f64SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the initial refinement after setup");
79156ba9f64SToby Isaac   forest->initRefinement = initRefinement;
79256ba9f64SToby Isaac   PetscFunctionReturn(0);
79356ba9f64SToby Isaac }
79456ba9f64SToby Isaac 
7959be51f97SToby Isaac /*@
7969be51f97SToby Isaac   DMForestGetInitialRefinement - Get the initial level of refinement (relative to the base DM, see
7979be51f97SToby Isaac   DMForestGetBaseDM()) allowed in the forest.
7989be51f97SToby Isaac 
7999be51f97SToby Isaac   Not collective
8009be51f97SToby Isaac 
8019be51f97SToby Isaac   Input Parameter:
8029be51f97SToby Isaac . dm - the forest
8039be51f97SToby Isaac 
8049be51f97SToby Isaac   Output Paramater:
805bf2d5fbbSStefano Zampini . initRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest)
8069be51f97SToby Isaac 
8079be51f97SToby Isaac   Level: intermediate
8089be51f97SToby Isaac 
8099be51f97SToby Isaac .seealso: DMForestSetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestGetBaseDM()
8109be51f97SToby Isaac @*/
81156ba9f64SToby Isaac PetscErrorCode DMForestGetInitialRefinement(DM dm, PetscInt *initRefinement)
81256ba9f64SToby Isaac {
81356ba9f64SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
81456ba9f64SToby Isaac 
81556ba9f64SToby Isaac   PetscFunctionBegin;
81656ba9f64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
81756ba9f64SToby Isaac   PetscValidIntPointer(initRefinement,2);
81856ba9f64SToby Isaac   *initRefinement = forest->initRefinement;
81956ba9f64SToby Isaac   PetscFunctionReturn(0);
82056ba9f64SToby Isaac }
82156ba9f64SToby Isaac 
8229be51f97SToby Isaac /*@
8239be51f97SToby Isaac   DMForestSetMaximumRefinement - During the pre-setup phase, set the maximum level of refinement (relative to the base
8249be51f97SToby Isaac   DM, see DMForestGetBaseDM()) allowed in the forest.  If the forest is being created by refining a previous forest
8259be51f97SToby Isaac   (see DMForestGetAdaptivityForest()), this limits the amount of refinement.
8269be51f97SToby Isaac 
8279be51f97SToby Isaac   Logically collective on dm
8289be51f97SToby Isaac 
8299be51f97SToby Isaac   Input Parameters:
8309be51f97SToby Isaac + dm - the forest
8319be51f97SToby Isaac - maxRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest)
8329be51f97SToby Isaac 
8339be51f97SToby Isaac   Level: intermediate
8349be51f97SToby Isaac 
8359be51f97SToby Isaac .seealso: DMForestGetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestSetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityDM()
8369be51f97SToby Isaac @*/
837c7eeac06SToby Isaac PetscErrorCode DMForestSetMaximumRefinement(DM dm, PetscInt maxRefinement)
838dd8e54a2SToby Isaac {
839dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
840dd8e54a2SToby Isaac 
841dd8e54a2SToby Isaac   PetscFunctionBegin;
842dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
843ef51cf95SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the maximum refinement after setup");
844c7eeac06SToby Isaac   forest->maxRefinement = maxRefinement;
845dd8e54a2SToby Isaac   PetscFunctionReturn(0);
846dd8e54a2SToby Isaac }
847dd8e54a2SToby Isaac 
8489be51f97SToby Isaac /*@
8499be51f97SToby Isaac   DMForestGetMaximumRefinement - Get the maximum level of refinement (relative to the base DM, see
8509be51f97SToby Isaac   DMForestGetBaseDM()) allowed in the forest.  If the forest is being created by refining a previous forest (see
8519be51f97SToby Isaac   DMForestGetAdaptivityForest()), this limits the amount of refinement.
8529be51f97SToby Isaac 
8539be51f97SToby Isaac   Not collective
8549be51f97SToby Isaac 
8559be51f97SToby Isaac   Input Parameter:
8569be51f97SToby Isaac . dm - the forest
8579be51f97SToby Isaac 
8589be51f97SToby Isaac   Output Parameter:
8599be51f97SToby Isaac . maxRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest)
8609be51f97SToby Isaac 
8619be51f97SToby Isaac   Level: intermediate
8629be51f97SToby Isaac 
8639be51f97SToby Isaac .seealso: DMForestSetMaximumRefinement(), DMForestGetMinimumRefinement(), DMForestGetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityForest()
8649be51f97SToby Isaac @*/
865c7eeac06SToby Isaac PetscErrorCode DMForestGetMaximumRefinement(DM dm, PetscInt *maxRefinement)
866dd8e54a2SToby Isaac {
867dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
868dd8e54a2SToby Isaac 
869dd8e54a2SToby Isaac   PetscFunctionBegin;
870dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
871c7eeac06SToby Isaac   PetscValidIntPointer(maxRefinement,2);
872c7eeac06SToby Isaac   *maxRefinement = forest->maxRefinement;
873dd8e54a2SToby Isaac   PetscFunctionReturn(0);
874dd8e54a2SToby Isaac }
875c7eeac06SToby Isaac 
8769be51f97SToby Isaac /*@C
8779be51f97SToby Isaac   DMForestSetAdaptivityStrategy - During the pre-setup phase, set the strategy for combining adaptivity labels from multiple processes.
8789be51f97SToby Isaac   Subtypes of DMForest may define their own strategies.  Two default strategies are DMFORESTADAPTALL, which indicates that all processes must agree
8799be51f97SToby Isaac   for a refinement/coarsening flag to be valid, and DMFORESTADAPTANY, which indicates that only one process needs to
8809be51f97SToby Isaac   specify refinement/coarsening.
8819be51f97SToby Isaac 
8829be51f97SToby Isaac   Logically collective on dm
8839be51f97SToby Isaac 
8849be51f97SToby Isaac   Input Parameters:
8859be51f97SToby Isaac + dm - the forest
8869be51f97SToby Isaac - adaptStrategy - default DMFORESTADAPTALL
8879be51f97SToby Isaac 
8889be51f97SToby Isaac   Level: advanced
8899be51f97SToby Isaac 
8909be51f97SToby Isaac .seealso: DMForestGetAdaptivityStrategy()
8919be51f97SToby Isaac @*/
892c7eeac06SToby Isaac PetscErrorCode DMForestSetAdaptivityStrategy(DM dm, DMForestAdaptivityStrategy adaptStrategy)
893c7eeac06SToby Isaac {
894c7eeac06SToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
895c7eeac06SToby Isaac   PetscErrorCode ierr;
896c7eeac06SToby Isaac 
897c7eeac06SToby Isaac   PetscFunctionBegin;
898c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
899c7eeac06SToby Isaac   ierr = PetscFree(forest->adaptStrategy);CHKERRQ(ierr);
900a73e2921SToby Isaac   ierr = PetscStrallocpy((const char*) adaptStrategy,(char**)&forest->adaptStrategy);CHKERRQ(ierr);
901c7eeac06SToby Isaac   PetscFunctionReturn(0);
902c7eeac06SToby Isaac }
903c7eeac06SToby Isaac 
9049be51f97SToby Isaac /*@C
9059be51f97SToby Isaac   DMForestSetAdaptivityStrategy - Get the strategy for combining adaptivity labels from multiple processes.  Subtypes
9069be51f97SToby Isaac   of DMForest may define their own strategies.  Two default strategies are DMFORESTADAPTALL, which indicates that all
9079be51f97SToby Isaac   processes must agree for a refinement/coarsening flag to be valid, and DMFORESTADAPTANY, which indicates that only
9089be51f97SToby Isaac   one process needs to specify refinement/coarsening.
9099be51f97SToby Isaac 
9109be51f97SToby Isaac   Not collective
9119be51f97SToby Isaac 
9129be51f97SToby Isaac   Input Parameter:
9139be51f97SToby Isaac . dm - the forest
9149be51f97SToby Isaac 
9159be51f97SToby Isaac   Output Parameter:
9169be51f97SToby Isaac . adaptStrategy - the adaptivity strategy (default DMFORESTADAPTALL)
9179be51f97SToby Isaac 
9189be51f97SToby Isaac   Level: advanced
9199be51f97SToby Isaac 
9209be51f97SToby Isaac .seealso: DMForestSetAdaptivityStrategy()
9219be51f97SToby Isaac @*/
922c7eeac06SToby Isaac PetscErrorCode DMForestGetAdaptivityStrategy(DM dm, DMForestAdaptivityStrategy *adaptStrategy)
923c7eeac06SToby Isaac {
924c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
925c7eeac06SToby Isaac 
926c7eeac06SToby Isaac   PetscFunctionBegin;
927c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
928c7eeac06SToby Isaac   PetscValidPointer(adaptStrategy,2);
929c7eeac06SToby Isaac   *adaptStrategy = forest->adaptStrategy;
930c7eeac06SToby Isaac   PetscFunctionReturn(0);
931c7eeac06SToby Isaac }
932c7eeac06SToby Isaac 
9332a133e43SToby Isaac /*@
9342a133e43SToby Isaac   DMForestGetAdaptivitySuccess - Return whether the requested adaptation (refinement, coarsening, repartitioning,
9352a133e43SToby Isaac   etc.) was successful.  PETSC_FALSE indicates that the post-adaptation forest is the same as the pre-adpatation
9362a133e43SToby Isaac   forest.  A requested adaptation may have been unsuccessful if, for example, the requested refinement would have
9372a133e43SToby Isaac   exceeded the maximum refinement level.
9382a133e43SToby Isaac 
9392a133e43SToby Isaac   Collective on dm
9402a133e43SToby Isaac 
9412a133e43SToby Isaac   Input Parameter:
9422a133e43SToby Isaac 
9432a133e43SToby Isaac . dm - the post-adaptation forest
9442a133e43SToby Isaac 
9452a133e43SToby Isaac   Output Parameter:
9462a133e43SToby Isaac 
9472a133e43SToby Isaac . success - PETSC_TRUE if the post-adaptation forest is different from the pre-adaptation forest.
9482a133e43SToby Isaac 
9492a133e43SToby Isaac   Level: intermediate
9502a133e43SToby Isaac 
9512a133e43SToby Isaac .see
9522a133e43SToby Isaac @*/
9532a133e43SToby Isaac PetscErrorCode DMForestGetAdaptivitySuccess(DM dm, PetscBool *success)
9542a133e43SToby Isaac {
9552a133e43SToby Isaac   DM_Forest      *forest;
9562a133e43SToby Isaac   PetscErrorCode ierr;
9572a133e43SToby Isaac 
9582a133e43SToby Isaac   PetscFunctionBegin;
9592a133e43SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9602a133e43SToby Isaac   if (!dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"DMSetUp() has not been called yet.");
9612a133e43SToby Isaac   forest = (DM_Forest *) dm->data;
9622a133e43SToby Isaac   ierr = (forest->getadaptivitysuccess)(dm,success);CHKERRQ(ierr);
9632a133e43SToby Isaac   PetscFunctionReturn(0);
9642a133e43SToby Isaac }
9652a133e43SToby Isaac 
966bf9b5d84SToby Isaac /*@
967bf9b5d84SToby Isaac   DMForestSetComputeAdaptivitySF - During the pre-setup phase, set whether transfer PetscSFs should be computed
968bf9b5d84SToby Isaac   relating the cells of the pre-adaptation forest to the post-adaptiation forest.  After DMSetUp() is called, these transfer PetscSFs can be accessed with DMForestGetAdaptivitySF().
969bf9b5d84SToby Isaac 
970bf9b5d84SToby Isaac   Logically collective on dm
971bf9b5d84SToby Isaac 
972bf9b5d84SToby Isaac   Input Parameters:
973bf9b5d84SToby Isaac + dm - the post-adaptation forest
974bf9b5d84SToby Isaac - computeSF - default PETSC_TRUE
975bf9b5d84SToby Isaac 
976bf9b5d84SToby Isaac   Level: advanced
977bf9b5d84SToby Isaac 
978bf9b5d84SToby Isaac .seealso: DMForestGetComputeAdaptivitySF(), DMForestGetAdaptivitySF()
979bf9b5d84SToby Isaac @*/
980bf9b5d84SToby Isaac PetscErrorCode DMForestSetComputeAdaptivitySF(DM dm, PetscBool computeSF)
981bf9b5d84SToby Isaac {
982bf9b5d84SToby Isaac   DM_Forest *forest;
983bf9b5d84SToby Isaac 
984bf9b5d84SToby Isaac   PetscFunctionBegin;
985bf9b5d84SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
986bf9b5d84SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot compute adaptivity PetscSFs after setup is called");
987bf9b5d84SToby Isaac   forest                 = (DM_Forest*) dm->data;
988bf9b5d84SToby Isaac   forest->computeAdaptSF = computeSF;
989bf9b5d84SToby Isaac   PetscFunctionReturn(0);
990bf9b5d84SToby Isaac }
991bf9b5d84SToby Isaac 
9920eb7e1eaSToby Isaac PetscErrorCode DMForestTransferVec(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut, PetscBool useBCs, PetscReal time)
99380b27e07SToby Isaac {
99480b27e07SToby Isaac   DM_Forest      *forest;
99580b27e07SToby Isaac   PetscErrorCode ierr;
99680b27e07SToby Isaac 
99780b27e07SToby Isaac   PetscFunctionBegin;
99880b27e07SToby Isaac   PetscValidHeaderSpecific(dmIn   ,DM_CLASSID  ,1);
99980b27e07SToby Isaac   PetscValidHeaderSpecific(vecIn  ,VEC_CLASSID ,2);
100080b27e07SToby Isaac   PetscValidHeaderSpecific(dmOut  ,DM_CLASSID  ,3);
100180b27e07SToby Isaac   PetscValidHeaderSpecific(vecOut ,VEC_CLASSID ,4);
100280b27e07SToby Isaac   forest = (DM_Forest *) dmIn->data;
100380b27e07SToby Isaac   if (!forest->transfervec) SETERRQ(PetscObjectComm((PetscObject)dmIn),PETSC_ERR_SUP,"DMForestTransferVec() not implemented");
10040eb7e1eaSToby Isaac   ierr = (forest->transfervec)(dmIn,vecIn,dmOut,vecOut,useBCs,time);CHKERRQ(ierr);
100580b27e07SToby Isaac   PetscFunctionReturn(0);
100680b27e07SToby Isaac }
100780b27e07SToby Isaac 
1008ac34a06fSStefano Zampini PetscErrorCode DMForestTransferVecFromBase(DM dm, Vec vecIn, Vec vecOut)
1009ac34a06fSStefano Zampini {
1010ac34a06fSStefano Zampini   DM_Forest      *forest;
1011ac34a06fSStefano Zampini   PetscErrorCode ierr;
1012ac34a06fSStefano Zampini 
1013ac34a06fSStefano Zampini   PetscFunctionBegin;
1014ac34a06fSStefano Zampini   PetscValidHeaderSpecific(dm   ,DM_CLASSID  ,1);
1015ac34a06fSStefano Zampini   PetscValidHeaderSpecific(vecIn  ,VEC_CLASSID ,2);
1016ac34a06fSStefano Zampini   PetscValidHeaderSpecific(vecOut ,VEC_CLASSID ,3);
1017ac34a06fSStefano Zampini   forest = (DM_Forest *) dm->data;
1018ac34a06fSStefano Zampini   if (!forest->transfervecfrombase) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DMForestTransferVecFromBase() not implemented");
1019ac34a06fSStefano Zampini   ierr = (forest->transfervecfrombase)(dm,vecIn,vecOut);CHKERRQ(ierr);
1020ac34a06fSStefano Zampini   PetscFunctionReturn(0);
1021ac34a06fSStefano Zampini }
1022ac34a06fSStefano Zampini 
1023bf9b5d84SToby Isaac /*@
1024bf9b5d84SToby Isaac   DMForestGetComputeAdaptivitySF - Get whether transfer PetscSFs should be computed relating the cells of the
1025bf9b5d84SToby Isaac   pre-adaptation forest to the post-adaptiation forest.  After DMSetUp() is called, these transfer PetscSFs can be
1026bf9b5d84SToby Isaac   accessed with DMForestGetAdaptivitySF().
1027bf9b5d84SToby Isaac 
1028bf9b5d84SToby Isaac   Not collective
1029bf9b5d84SToby Isaac 
1030bf9b5d84SToby Isaac   Input Parameter:
1031bf9b5d84SToby Isaac . dm - the post-adaptation forest
1032bf9b5d84SToby Isaac 
1033bf9b5d84SToby Isaac   Output Parameter:
1034bf9b5d84SToby Isaac . computeSF - default PETSC_TRUE
1035bf9b5d84SToby Isaac 
1036bf9b5d84SToby Isaac   Level: advanced
1037bf9b5d84SToby Isaac 
1038bf9b5d84SToby Isaac .seealso: DMForestSetComputeAdaptivitySF(), DMForestGetAdaptivitySF()
1039bf9b5d84SToby Isaac @*/
1040bf9b5d84SToby Isaac PetscErrorCode DMForestGetComputeAdaptivitySF(DM dm, PetscBool *computeSF)
1041bf9b5d84SToby Isaac {
1042bf9b5d84SToby Isaac   DM_Forest *forest;
1043bf9b5d84SToby Isaac 
1044bf9b5d84SToby Isaac   PetscFunctionBegin;
1045bf9b5d84SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1046bf9b5d84SToby Isaac   forest     = (DM_Forest*) dm->data;
1047bf9b5d84SToby Isaac   *computeSF = forest->computeAdaptSF;
1048bf9b5d84SToby Isaac   PetscFunctionReturn(0);
1049bf9b5d84SToby Isaac }
1050bf9b5d84SToby Isaac 
1051bf9b5d84SToby Isaac /*@
1052bf9b5d84SToby Isaac   DMForestGetAdaptivitySF - Get PetscSFs that relate the pre-adaptation forest to the post-adaptation forest.
1053bf9b5d84SToby Isaac   Adaptation can be any combination of refinement, coarsening, repartition, and change of overlap, so there may be
1054bf9b5d84SToby Isaac   some cells of the pre-adaptation that are parents of post-adaptation cells, and vice versa.  Therefore there are two
1055bf9b5d84SToby Isaac   PetscSFs: one that relates pre-adaptation coarse cells to post-adaptation fine cells, and one that relates
1056bf9b5d84SToby Isaac   pre-adaptation fine cells to post-adaptation coarse cells.
1057bf9b5d84SToby Isaac 
1058bf9b5d84SToby Isaac   Not collective
1059bf9b5d84SToby Isaac 
1060bf9b5d84SToby Isaac   Input Parameter:
1061bf9b5d84SToby Isaac   dm - the post-adaptation forest
1062bf9b5d84SToby Isaac 
1063bf9b5d84SToby Isaac   Output Parameter:
10640f17b9e3SToby Isaac   preCoarseToFine - pre-adaptation coarse cells to post-adaptation fine cells: BCast goes from pre- to post-
10650f17b9e3SToby Isaac   coarseToPreFine - post-adaptation coarse cells to pre-adaptation fine cells: BCast goes from post- to pre-
1066bf9b5d84SToby Isaac 
1067bf9b5d84SToby Isaac   Level: advanced
1068bf9b5d84SToby Isaac 
1069bf9b5d84SToby Isaac .seealso: DMForestGetComputeAdaptivitySF(), DMForestSetComputeAdaptivitySF()
1070bf9b5d84SToby Isaac @*/
10710f17b9e3SToby Isaac PetscErrorCode DMForestGetAdaptivitySF(DM dm, PetscSF *preCoarseToFine, PetscSF *coarseToPreFine)
1072bf9b5d84SToby Isaac {
1073bf9b5d84SToby Isaac   DM_Forest      *forest;
1074bf9b5d84SToby Isaac   PetscErrorCode ierr;
1075bf9b5d84SToby Isaac 
1076bf9b5d84SToby Isaac   PetscFunctionBegin;
1077bf9b5d84SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1078bf9b5d84SToby Isaac   ierr   = DMSetUp(dm);CHKERRQ(ierr);
1079bf9b5d84SToby Isaac   forest = (DM_Forest*) dm->data;
1080f885a11aSToby Isaac   if (preCoarseToFine) *preCoarseToFine = forest->preCoarseToFine;
1081f885a11aSToby Isaac   if (coarseToPreFine) *coarseToPreFine = forest->coarseToPreFine;
1082bf9b5d84SToby Isaac   PetscFunctionReturn(0);
1083bf9b5d84SToby Isaac }
1084bf9b5d84SToby Isaac 
10859be51f97SToby Isaac /*@
10869be51f97SToby Isaac   DMForestSetGradeFactor - During the pre-setup phase, set the desired amount of grading in the mesh, e.g. give 2 to
10879be51f97SToby Isaac   indicate that the diameter of neighboring cells should differ by at most a factor of 2.  Subtypes of DMForest may
10889be51f97SToby Isaac   only support one particular choice of grading factor.
10899be51f97SToby Isaac 
10909be51f97SToby Isaac   Logically collective on dm
10919be51f97SToby Isaac 
10929be51f97SToby Isaac   Input Parameters:
10939be51f97SToby Isaac + dm - the forest
10949be51f97SToby Isaac - grade - the grading factor
10959be51f97SToby Isaac 
10969be51f97SToby Isaac   Level: advanced
10979be51f97SToby Isaac 
10989be51f97SToby Isaac .seealso: DMForestGetGradeFactor()
10999be51f97SToby Isaac @*/
1100c7eeac06SToby Isaac PetscErrorCode DMForestSetGradeFactor(DM dm, PetscInt grade)
1101c7eeac06SToby Isaac {
1102c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
1103c7eeac06SToby Isaac 
1104c7eeac06SToby Isaac   PetscFunctionBegin;
1105c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1106ef51cf95SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the grade factor after setup");
1107c7eeac06SToby Isaac   forest->gradeFactor = grade;
1108c7eeac06SToby Isaac   PetscFunctionReturn(0);
1109c7eeac06SToby Isaac }
1110c7eeac06SToby Isaac 
11119be51f97SToby Isaac /*@
11129be51f97SToby Isaac   DMForestGetGradeFactor - Get the desired amount of grading in the mesh, e.g. give 2 to indicate that the diameter of
11139be51f97SToby Isaac   neighboring cells should differ by at most a factor of 2.  Subtypes of DMForest may only support one particular
11149be51f97SToby Isaac   choice of grading factor.
11159be51f97SToby Isaac 
11169be51f97SToby Isaac   Not collective
11179be51f97SToby Isaac 
11189be51f97SToby Isaac   Input Parameter:
11199be51f97SToby Isaac . dm - the forest
11209be51f97SToby Isaac 
11219be51f97SToby Isaac   Output Parameter:
11229be51f97SToby Isaac . grade - the grading factor
11239be51f97SToby Isaac 
11249be51f97SToby Isaac   Level: advanced
11259be51f97SToby Isaac 
11269be51f97SToby Isaac .seealso: DMForestSetGradeFactor()
11279be51f97SToby Isaac @*/
1128c7eeac06SToby Isaac PetscErrorCode DMForestGetGradeFactor(DM dm, PetscInt *grade)
1129c7eeac06SToby Isaac {
1130c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
1131c7eeac06SToby Isaac 
1132c7eeac06SToby Isaac   PetscFunctionBegin;
1133c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1134c7eeac06SToby Isaac   PetscValidIntPointer(grade,2);
1135c7eeac06SToby Isaac   *grade = forest->gradeFactor;
1136c7eeac06SToby Isaac   PetscFunctionReturn(0);
1137c7eeac06SToby Isaac }
1138c7eeac06SToby Isaac 
11399be51f97SToby Isaac /*@
11409be51f97SToby Isaac   DMForestSetCellWeightFactor - During the pre-setup phase, set the factor by which the level of refinement changes
11419be51f97SToby Isaac   the cell weight (see DMForestSetCellWeights()) when calculating partitions.  The final weight of a cell will be
11429be51f97SToby Isaac   (cellWeight) * (weightFactor^refinementLevel).  A factor of 1 indicates that the weight of a cell does not depend on
11439be51f97SToby Isaac   its level; a factor of 2, for example, might be appropriate for sub-cycling time-stepping methods, when the
11449be51f97SToby Isaac   computation associated with a cell is multiplied by a factor of 2 for each additional level of refinement.
11459be51f97SToby Isaac 
11469be51f97SToby Isaac   Logically collective on dm
11479be51f97SToby Isaac 
11489be51f97SToby Isaac   Input Parameters:
11499be51f97SToby Isaac + dm - the forest
11509be51f97SToby Isaac - weightsFactors - default 1.
11519be51f97SToby Isaac 
11529be51f97SToby Isaac   Level: advanced
11539be51f97SToby Isaac 
11549be51f97SToby Isaac .seealso: DMForestGetCellWeightFactor(), DMForestSetCellWeights()
11559be51f97SToby Isaac @*/
1156ef51cf95SToby Isaac PetscErrorCode DMForestSetCellWeightFactor(DM dm, PetscReal weightsFactor)
1157c7eeac06SToby Isaac {
1158c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
1159c7eeac06SToby Isaac 
1160c7eeac06SToby Isaac   PetscFunctionBegin;
1161c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1162ef51cf95SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the weights factor after setup");
1163c7eeac06SToby Isaac   forest->weightsFactor = weightsFactor;
1164c7eeac06SToby Isaac   PetscFunctionReturn(0);
1165c7eeac06SToby Isaac }
1166c7eeac06SToby Isaac 
11679be51f97SToby Isaac /*@
11689be51f97SToby Isaac   DMForestGetCellWeightFactor - Get the factor by which the level of refinement changes the cell weight (see
11699be51f97SToby Isaac   DMForestSetCellWeights()) when calculating partitions.  The final weight of a cell will be (cellWeight) *
11709be51f97SToby Isaac   (weightFactor^refinementLevel).  A factor of 1 indicates that the weight of a cell does not depend on its level; a
11719be51f97SToby Isaac   factor of 2, for example, might be appropriate for sub-cycling time-stepping methods, when the computation
11729be51f97SToby Isaac   associated with a cell is multiplied by a factor of 2 for each additional level of refinement.
11739be51f97SToby Isaac 
11749be51f97SToby Isaac   Not collective
11759be51f97SToby Isaac 
11769be51f97SToby Isaac   Input Parameter:
11779be51f97SToby Isaac . dm - the forest
11789be51f97SToby Isaac 
11799be51f97SToby Isaac   Output Parameter:
11809be51f97SToby Isaac . weightsFactors - default 1.
11819be51f97SToby Isaac 
11829be51f97SToby Isaac   Level: advanced
11839be51f97SToby Isaac 
11849be51f97SToby Isaac .seealso: DMForestSetCellWeightFactor(), DMForestSetCellWeights()
11859be51f97SToby Isaac @*/
1186ef51cf95SToby Isaac PetscErrorCode DMForestGetCellWeightFactor(DM dm, PetscReal *weightsFactor)
1187c7eeac06SToby Isaac {
1188c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
1189c7eeac06SToby Isaac 
1190c7eeac06SToby Isaac   PetscFunctionBegin;
1191c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1192c7eeac06SToby Isaac   PetscValidRealPointer(weightsFactor,2);
1193c7eeac06SToby Isaac   *weightsFactor = forest->weightsFactor;
1194c7eeac06SToby Isaac   PetscFunctionReturn(0);
1195c7eeac06SToby Isaac }
1196c7eeac06SToby Isaac 
11979be51f97SToby Isaac /*@
11989be51f97SToby Isaac   DMForestGetCellChart - After the setup phase, get the local half-open interval of the chart of cells on this process
11999be51f97SToby Isaac 
12009be51f97SToby Isaac   Not collective
12019be51f97SToby Isaac 
12029be51f97SToby Isaac   Input Parameter:
12039be51f97SToby Isaac . dm - the forest
12049be51f97SToby Isaac 
12059be51f97SToby Isaac   Output Parameters:
12069be51f97SToby Isaac + cStart - the first cell on this process
12079be51f97SToby Isaac - cEnd - one after the final cell on this process
12089be51f97SToby Isaac 
12091a244344SSatish Balay   Level: intermediate
12109be51f97SToby Isaac 
12119be51f97SToby Isaac .seealso: DMForestGetCellSF()
12129be51f97SToby Isaac @*/
1213c7eeac06SToby Isaac PetscErrorCode DMForestGetCellChart(DM dm, PetscInt *cStart, PetscInt *cEnd)
1214c7eeac06SToby Isaac {
1215c7eeac06SToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
1216c7eeac06SToby Isaac   PetscErrorCode ierr;
1217c7eeac06SToby Isaac 
1218c7eeac06SToby Isaac   PetscFunctionBegin;
1219c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1220c7eeac06SToby Isaac   PetscValidIntPointer(cStart,2);
1221c7eeac06SToby Isaac   PetscValidIntPointer(cEnd,2);
1222c7eeac06SToby Isaac   if (((forest->cStart == PETSC_DETERMINE) || (forest->cEnd == PETSC_DETERMINE)) && forest->createcellchart) {
1223c7eeac06SToby Isaac     ierr = forest->createcellchart(dm,&forest->cStart,&forest->cEnd);CHKERRQ(ierr);
1224c7eeac06SToby Isaac   }
1225c7eeac06SToby Isaac   *cStart =  forest->cStart;
1226c7eeac06SToby Isaac   *cEnd   =  forest->cEnd;
1227c7eeac06SToby Isaac   PetscFunctionReturn(0);
1228c7eeac06SToby Isaac }
1229c7eeac06SToby Isaac 
12309be51f97SToby Isaac /*@
12319be51f97SToby Isaac   DMForestGetCellSF - After the setup phase, get the PetscSF for overlapping cells between processes
12329be51f97SToby Isaac 
12339be51f97SToby Isaac   Not collective
12349be51f97SToby Isaac 
12359be51f97SToby Isaac   Input Parameter:
12369be51f97SToby Isaac . dm - the forest
12379be51f97SToby Isaac 
12389be51f97SToby Isaac   Output Parameter:
12399be51f97SToby Isaac . cellSF - the PetscSF
12409be51f97SToby Isaac 
12411a244344SSatish Balay   Level: intermediate
12429be51f97SToby Isaac 
12439be51f97SToby Isaac .seealso: DMForestGetCellChart()
12449be51f97SToby Isaac @*/
1245c7eeac06SToby Isaac PetscErrorCode DMForestGetCellSF(DM dm, PetscSF *cellSF)
1246c7eeac06SToby Isaac {
1247c7eeac06SToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
1248c7eeac06SToby Isaac   PetscErrorCode ierr;
1249c7eeac06SToby Isaac 
1250c7eeac06SToby Isaac   PetscFunctionBegin;
1251c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1252c7eeac06SToby Isaac   PetscValidPointer(cellSF,2);
1253c7eeac06SToby Isaac   if ((!forest->cellSF) && forest->createcellsf) {
1254c7eeac06SToby Isaac     ierr = forest->createcellsf(dm,&forest->cellSF);CHKERRQ(ierr);
1255c7eeac06SToby Isaac   }
1256c7eeac06SToby Isaac   *cellSF = forest->cellSF;
1257c7eeac06SToby Isaac   PetscFunctionReturn(0);
1258c7eeac06SToby Isaac }
1259c7eeac06SToby Isaac 
12609be51f97SToby Isaac /*@C
12619be51f97SToby Isaac   DMForestSetAdaptivityLabel - During the pre-setup phase, set the label of the pre-adaptation forest (see
12629be51f97SToby Isaac   DMForestGetAdaptivityForest()) that holds the adaptation flags (refinement, coarsening, or some combination).  The
1263cd3c525cSToby Isaac   interpretation of the label values is up to the subtype of DMForest, but DM_ADAPT_DETERMINE, DM_ADAPT_KEEP,
1264cd3c525cSToby Isaac   DM_ADAPT_REFINE, and DM_ADAPT_COARSEN have been reserved as choices that should be accepted by all subtypes.
12659be51f97SToby Isaac 
12669be51f97SToby Isaac   Logically collective on dm
12679be51f97SToby Isaac 
12689be51f97SToby Isaac   Input Parameters:
12699be51f97SToby Isaac - dm - the forest
1270a1b0c543SToby Isaac + adaptLabel - the label in the pre-adaptation forest
12719be51f97SToby Isaac 
12729be51f97SToby Isaac   Level: intermediate
12739be51f97SToby Isaac 
12749be51f97SToby Isaac .seealso DMForestGetAdaptivityLabel()
12759be51f97SToby Isaac @*/
1276a1b0c543SToby Isaac PetscErrorCode DMForestSetAdaptivityLabel(DM dm, DMLabel adaptLabel)
1277c7eeac06SToby Isaac {
1278c7eeac06SToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
1279c7eeac06SToby Isaac   PetscErrorCode ierr;
1280c7eeac06SToby Isaac 
1281c7eeac06SToby Isaac   PetscFunctionBegin;
1282c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
1283a1b0c543SToby Isaac   if (forest->adaptLabel) {ierr = DMLabelDestroy(&forest->adaptLabel);CHKERRQ(ierr);}
1284a1b0c543SToby Isaac   forest->adaptLabel = adaptLabel;
1285d67d17b1SMatthew G. Knepley   ierr = PetscObjectReference((PetscObject) adaptLabel);CHKERRQ(ierr);
1286c7eeac06SToby Isaac   PetscFunctionReturn(0);
1287c7eeac06SToby Isaac }
1288c7eeac06SToby Isaac 
12899be51f97SToby Isaac /*@C
12909be51f97SToby Isaac   DMForestGetAdaptivityLabel - Get the label of the pre-adaptation forest (see DMForestGetAdaptivityForest()) that
12919be51f97SToby Isaac   holds the adaptation flags (refinement, coarsening, or some combination).  The interpretation of the label values is
1292cd3c525cSToby Isaac   up to the subtype of DMForest, but DM_ADAPT_DETERMINE, DM_ADAPT_KEEP, DM_ADAPT_REFINE, and DM_ADAPT_COARSEN have
1293cd3c525cSToby Isaac   been reserved as choices that should be accepted by all subtypes.
12949be51f97SToby Isaac 
12959be51f97SToby Isaac   Not collective
12969be51f97SToby Isaac 
12979be51f97SToby Isaac   Input Parameter:
12989be51f97SToby Isaac . dm - the forest
12999be51f97SToby Isaac 
13009be51f97SToby Isaac   Output Parameter:
13019be51f97SToby Isaac . adaptLabel - the name of the label in the pre-adaptation forest
13029be51f97SToby Isaac 
13039be51f97SToby Isaac   Level: intermediate
13049be51f97SToby Isaac 
13059be51f97SToby Isaac .seealso DMForestSetAdaptivityLabel()
13069be51f97SToby Isaac @*/
1307a1b0c543SToby Isaac PetscErrorCode DMForestGetAdaptivityLabel(DM dm, DMLabel *adaptLabel)
1308c7eeac06SToby Isaac {
1309c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
1310c7eeac06SToby Isaac 
1311c7eeac06SToby Isaac   PetscFunctionBegin;
1312c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1313ba936b91SToby Isaac   *adaptLabel = forest->adaptLabel;
1314c7eeac06SToby Isaac   PetscFunctionReturn(0);
1315c7eeac06SToby Isaac }
1316c7eeac06SToby Isaac 
13179be51f97SToby Isaac /*@
13189be51f97SToby Isaac   DMForestSetCellWeights - Set the weights assigned to each of the cells (see DMForestGetCellChart()) of the current
13199be51f97SToby Isaac   process: weights are used to determine parallel partitioning.  Partitions will be created so that each process's
13209be51f97SToby Isaac   ratio of weight to capacity (see DMForestSetWeightCapacity()) is roughly equal. If NULL, each cell receives a weight
13219be51f97SToby Isaac   of 1.
13229be51f97SToby Isaac 
13239be51f97SToby Isaac   Logically collective on dm
13249be51f97SToby Isaac 
13259be51f97SToby Isaac   Input Parameters:
13269be51f97SToby Isaac + dm - the forest
13279be51f97SToby Isaac . weights - the array of weights for all cells, or NULL to indicate each cell has weight 1.
13289be51f97SToby Isaac - copyMode - how weights should reference weights
13299be51f97SToby Isaac 
13309be51f97SToby Isaac   Level: advanced
13319be51f97SToby Isaac 
13329be51f97SToby Isaac .seealso: DMForestGetCellWeights(), DMForestSetWeightCapacity()
13339be51f97SToby Isaac @*/
1334c7eeac06SToby Isaac PetscErrorCode DMForestSetCellWeights(DM dm, PetscReal weights[], PetscCopyMode copyMode)
1335c7eeac06SToby Isaac {
1336c7eeac06SToby Isaac   DM_Forest      *forest = (DM_Forest*) dm->data;
1337c7eeac06SToby Isaac   PetscInt       cStart, cEnd;
1338c7eeac06SToby Isaac   PetscErrorCode ierr;
1339c7eeac06SToby Isaac 
1340c7eeac06SToby Isaac   PetscFunctionBegin;
1341c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
1342c7eeac06SToby Isaac   ierr = DMForestGetCellChart(dm,&cStart,&cEnd);CHKERRQ(ierr);
1343c7eeac06SToby Isaac   if (cEnd < cStart) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"cell chart [%d,%d) is not valid",cStart,cEnd);
1344c7eeac06SToby Isaac   if (copyMode == PETSC_COPY_VALUES) {
1345c7eeac06SToby Isaac     if (forest->cellWeightsCopyMode != PETSC_OWN_POINTER || forest->cellWeights == weights) {
1346c7eeac06SToby Isaac       ierr = PetscMalloc1(cEnd-cStart,&forest->cellWeights);CHKERRQ(ierr);
1347c7eeac06SToby Isaac     }
1348580bdb30SBarry Smith     ierr                        = PetscArraycpy(forest->cellWeights,weights,cEnd-cStart);CHKERRQ(ierr);
1349c7eeac06SToby Isaac     forest->cellWeightsCopyMode = PETSC_OWN_POINTER;
1350c7eeac06SToby Isaac     PetscFunctionReturn(0);
1351c7eeac06SToby Isaac   }
1352c7eeac06SToby Isaac   if (forest->cellWeightsCopyMode == PETSC_OWN_POINTER) {
1353c7eeac06SToby Isaac     ierr = PetscFree(forest->cellWeights);CHKERRQ(ierr);
1354c7eeac06SToby Isaac   }
1355c7eeac06SToby Isaac   forest->cellWeights         = weights;
1356c7eeac06SToby Isaac   forest->cellWeightsCopyMode = copyMode;
1357c7eeac06SToby Isaac   PetscFunctionReturn(0);
1358c7eeac06SToby Isaac }
1359c7eeac06SToby Isaac 
13609be51f97SToby Isaac /*@
13619be51f97SToby Isaac   DMForestGetCellWeights - Get the weights assigned to each of the cells (see DMForestGetCellChart()) of the current
13629be51f97SToby Isaac   process: weights are used to determine parallel partitioning.  Partitions will be created so that each process's
13639be51f97SToby Isaac   ratio of weight to capacity (see DMForestSetWeightCapacity()) is roughly equal. If NULL, each cell receives a weight
13649be51f97SToby Isaac   of 1.
13659be51f97SToby Isaac 
13669be51f97SToby Isaac   Not collective
13679be51f97SToby Isaac 
13689be51f97SToby Isaac   Input Parameter:
13699be51f97SToby Isaac . dm - the forest
13709be51f97SToby Isaac 
13719be51f97SToby Isaac   Output Parameter:
13729be51f97SToby Isaac . weights - the array of weights for all cells, or NULL to indicate each cell has weight 1.
13739be51f97SToby Isaac 
13749be51f97SToby Isaac   Level: advanced
13759be51f97SToby Isaac 
13769be51f97SToby Isaac .seealso: DMForestSetCellWeights(), DMForestSetWeightCapacity()
13779be51f97SToby Isaac @*/
1378c7eeac06SToby Isaac PetscErrorCode DMForestGetCellWeights(DM dm, PetscReal **weights)
1379c7eeac06SToby Isaac {
1380c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
1381c7eeac06SToby Isaac 
1382c7eeac06SToby Isaac   PetscFunctionBegin;
1383c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1384c7eeac06SToby Isaac   PetscValidPointer(weights,2);
1385c7eeac06SToby Isaac   *weights = forest->cellWeights;
1386c7eeac06SToby Isaac   PetscFunctionReturn(0);
1387c7eeac06SToby Isaac }
1388c7eeac06SToby Isaac 
13899be51f97SToby Isaac /*@
13909be51f97SToby Isaac   DMForestSetWeightCapacity - During the pre-setup phase, set the capacity of the current process when repartitioning
13919be51f97SToby Isaac   a pre-adaptation forest (see DMForestGetAdaptivityForest()).  After partitioning, the ratio of the weight of each
13929be51f97SToby Isaac   process's cells to the process's capacity will be roughly equal for all processes.  A capacity of 0 indicates that
13939be51f97SToby Isaac   the current process should not have any cells after repartitioning.
13949be51f97SToby Isaac 
13959be51f97SToby Isaac   Logically Collective on dm
13969be51f97SToby Isaac 
13979be51f97SToby Isaac   Input parameters:
13989be51f97SToby Isaac + dm - the forest
13999be51f97SToby Isaac - capacity - this process's capacity
14009be51f97SToby Isaac 
14019be51f97SToby Isaac   Level: advanced
14029be51f97SToby Isaac 
14039be51f97SToby Isaac .seealso DMForestGetWeightCapacity(), DMForestSetCellWeights(), DMForestSetCellWeightFactor()
14049be51f97SToby Isaac @*/
1405c7eeac06SToby Isaac PetscErrorCode DMForestSetWeightCapacity(DM dm, PetscReal capacity)
1406c7eeac06SToby Isaac {
1407c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
1408c7eeac06SToby Isaac 
1409c7eeac06SToby Isaac   PetscFunctionBegin;
1410c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
1411ef51cf95SToby Isaac   if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the weight capacity after setup");
1412c7eeac06SToby Isaac   if (capacity < 0.) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"Cannot have negative weight capacity; %f",capacity);
1413c7eeac06SToby Isaac   forest->weightCapacity = capacity;
1414c7eeac06SToby Isaac   PetscFunctionReturn(0);
1415c7eeac06SToby Isaac }
1416c7eeac06SToby Isaac 
14179be51f97SToby Isaac /*@
14189be51f97SToby Isaac   DMForestGetWeightCapacity - Set the capacity of the current process when repartitioning a pre-adaptation forest (see
14199be51f97SToby Isaac   DMForestGetAdaptivityForest()).  After partitioning, the ratio of the weight of each process's cells to the
14209be51f97SToby Isaac   process's capacity will be roughly equal for all processes.  A capacity of 0 indicates that the current process
14219be51f97SToby Isaac   should not have any cells after repartitioning.
14229be51f97SToby Isaac 
14239be51f97SToby Isaac   Not collective
14249be51f97SToby Isaac 
14259be51f97SToby Isaac   Input parameter:
14269be51f97SToby Isaac . dm - the forest
14279be51f97SToby Isaac 
14289be51f97SToby Isaac   Output parameter:
14299be51f97SToby Isaac . capacity - this process's capacity
14309be51f97SToby Isaac 
14319be51f97SToby Isaac   Level: advanced
14329be51f97SToby Isaac 
14339be51f97SToby Isaac .seealso DMForestSetWeightCapacity(), DMForestSetCellWeights(), DMForestSetCellWeightFactor()
14349be51f97SToby Isaac @*/
1435c7eeac06SToby Isaac PetscErrorCode DMForestGetWeightCapacity(DM dm, PetscReal *capacity)
1436c7eeac06SToby Isaac {
1437c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest*) dm->data;
1438c7eeac06SToby Isaac 
1439c7eeac06SToby Isaac   PetscFunctionBegin;
1440c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
1441c7eeac06SToby Isaac   PetscValidRealPointer(capacity,2);
1442c7eeac06SToby Isaac   *capacity = forest->weightCapacity;
1443c7eeac06SToby Isaac   PetscFunctionReturn(0);
1444c7eeac06SToby Isaac }
1445c7eeac06SToby Isaac 
14460709b2feSToby Isaac PETSC_EXTERN PetscErrorCode DMSetFromOptions_Forest(PetscOptionItems *PetscOptionsObject,DM dm)
1447db4d5e8cSToby Isaac {
144856ba9f64SToby Isaac   PetscBool                  flg, flg1, flg2, flg3, flg4;
1449dd8e54a2SToby Isaac   DMForestTopology           oldTopo;
1450c7eeac06SToby Isaac   char                       stringBuffer[256];
1451dd8e54a2SToby Isaac   PetscViewer                viewer;
1452dd8e54a2SToby Isaac   PetscViewerFormat          format;
145356ba9f64SToby Isaac   PetscInt                   adjDim, adjCodim, overlap, minRefinement, initRefinement, maxRefinement, grade;
1454c7eeac06SToby Isaac   PetscReal                  weightsFactor;
1455c7eeac06SToby Isaac   DMForestAdaptivityStrategy adaptStrategy;
1456db4d5e8cSToby Isaac   PetscErrorCode             ierr;
1457db4d5e8cSToby Isaac 
1458db4d5e8cSToby Isaac   PetscFunctionBegin;
1459db4d5e8cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1460dd8e54a2SToby Isaac   ierr                         = DMForestGetTopology(dm, &oldTopo);CHKERRQ(ierr);
1461a3eda1eaSToby Isaac   ierr                         = PetscOptionsHead(PetscOptionsObject,"DMForest Options");CHKERRQ(ierr);
146256ba9f64SToby Isaac   ierr                         = PetscOptionsString("-dm_forest_topology","the topology of the forest's base mesh","DMForestSetTopology",oldTopo,stringBuffer,256,&flg1);CHKERRQ(ierr);
146356ba9f64SToby Isaac   ierr                         = PetscOptionsViewer("-dm_forest_base_dm","load the base DM from a viewer specification","DMForestSetBaseDM",&viewer,&format,&flg2);CHKERRQ(ierr);
146456ba9f64SToby Isaac   ierr                         = PetscOptionsViewer("-dm_forest_coarse_forest","load the coarse forest from a viewer specification","DMForestSetCoarseForest",&viewer,&format,&flg3);CHKERRQ(ierr);
146556ba9f64SToby Isaac   ierr                         = PetscOptionsViewer("-dm_forest_fine_forest","load the fine forest from a viewer specification","DMForestSetFineForest",&viewer,&format,&flg4);CHKERRQ(ierr);
1466f885a11aSToby Isaac   if ((PetscInt) flg1 + (PetscInt) flg2 + (PetscInt) flg3 + (PetscInt) flg4 > 1) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_INCOMP,"Specify only one of -dm_forest_{topology,base_dm,coarse_forest,fine_forest}");
146756ba9f64SToby Isaac   if (flg1) {
146856ba9f64SToby Isaac     ierr = DMForestSetTopology(dm,(DMForestTopology)stringBuffer);CHKERRQ(ierr);
146956ba9f64SToby Isaac     ierr = DMForestSetBaseDM(dm,NULL);CHKERRQ(ierr);
147020e8089bSToby Isaac     ierr = DMForestSetAdaptivityForest(dm,NULL);CHKERRQ(ierr);
147156ba9f64SToby Isaac   }
147256ba9f64SToby Isaac   if (flg2) {
1473dd8e54a2SToby Isaac     DM base;
1474dd8e54a2SToby Isaac 
1475dd8e54a2SToby Isaac     ierr = DMCreate(PetscObjectComm((PetscObject)dm),&base);CHKERRQ(ierr);
1476dd8e54a2SToby Isaac     ierr = PetscViewerPushFormat(viewer,format);CHKERRQ(ierr);
1477dd8e54a2SToby Isaac     ierr = DMLoad(base,viewer);CHKERRQ(ierr);
1478dd8e54a2SToby Isaac     ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
1479dd8e54a2SToby Isaac     ierr = DMForestSetBaseDM(dm,base);CHKERRQ(ierr);
1480dd8e54a2SToby Isaac     ierr = DMDestroy(&base);CHKERRQ(ierr);
148156ba9f64SToby Isaac     ierr = DMForestSetTopology(dm,NULL);CHKERRQ(ierr);
148220e8089bSToby Isaac     ierr = DMForestSetAdaptivityForest(dm,NULL);CHKERRQ(ierr);
1483dd8e54a2SToby Isaac   }
148456ba9f64SToby Isaac   if (flg3) {
1485dd8e54a2SToby Isaac     DM coarse;
1486dd8e54a2SToby Isaac 
1487dd8e54a2SToby Isaac     ierr = DMCreate(PetscObjectComm((PetscObject)dm),&coarse);CHKERRQ(ierr);
1488dd8e54a2SToby Isaac     ierr = PetscViewerPushFormat(viewer,format);CHKERRQ(ierr);
1489dd8e54a2SToby Isaac     ierr = DMLoad(coarse,viewer);CHKERRQ(ierr);
1490dd8e54a2SToby Isaac     ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
149120e8089bSToby Isaac     ierr = DMForestSetAdaptivityForest(dm,coarse);CHKERRQ(ierr);
1492dd8e54a2SToby Isaac     ierr = DMDestroy(&coarse);CHKERRQ(ierr);
149356ba9f64SToby Isaac     ierr = DMForestSetTopology(dm,NULL);CHKERRQ(ierr);
149456ba9f64SToby Isaac     ierr = DMForestSetBaseDM(dm,NULL);CHKERRQ(ierr);
1495dd8e54a2SToby Isaac   }
149656ba9f64SToby Isaac   if (flg4) {
1497dd8e54a2SToby Isaac     DM fine;
1498dd8e54a2SToby Isaac 
1499dd8e54a2SToby Isaac     ierr = DMCreate(PetscObjectComm((PetscObject)dm),&fine);CHKERRQ(ierr);
1500dd8e54a2SToby Isaac     ierr = PetscViewerPushFormat(viewer,format);CHKERRQ(ierr);
1501dd8e54a2SToby Isaac     ierr = DMLoad(fine,viewer);CHKERRQ(ierr);
1502dd8e54a2SToby Isaac     ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
150320e8089bSToby Isaac     ierr = DMForestSetAdaptivityForest(dm,fine);CHKERRQ(ierr);
1504dd8e54a2SToby Isaac     ierr = DMDestroy(&fine);CHKERRQ(ierr);
150556ba9f64SToby Isaac     ierr = DMForestSetTopology(dm,NULL);CHKERRQ(ierr);
150656ba9f64SToby Isaac     ierr = DMForestSetBaseDM(dm,NULL);CHKERRQ(ierr);
1507dd8e54a2SToby Isaac   }
1508dd8e54a2SToby Isaac   ierr = DMForestGetAdjacencyDimension(dm,&adjDim);CHKERRQ(ierr);
1509*5a856986SBarry Smith   ierr = PetscOptionsBoundedInt("-dm_forest_adjacency_dimension","set the dimension of points that define adjacency in the forest","DMForestSetAdjacencyDimension",adjDim,&adjDim,&flg,1);CHKERRQ(ierr);
1510dd8e54a2SToby Isaac   if (flg) {
1511dd8e54a2SToby Isaac     ierr = DMForestSetAdjacencyDimension(dm,adjDim);CHKERRQ(ierr);
1512f885a11aSToby Isaac   } else {
1513dd8e54a2SToby Isaac     ierr = DMForestGetAdjacencyCodimension(dm,&adjCodim);CHKERRQ(ierr);
1514*5a856986SBarry Smith     ierr = PetscOptionsBoundedInt("-dm_forest_adjacency_codimension","set the codimension of points that define adjacency in the forest","DMForestSetAdjacencyCodimension",adjCodim,&adjCodim,&flg,1);CHKERRQ(ierr);
1515dd8e54a2SToby Isaac     if (flg) {
1516dd8e54a2SToby Isaac       ierr = DMForestSetAdjacencyCodimension(dm,adjCodim);CHKERRQ(ierr);
1517dd8e54a2SToby Isaac     }
1518dd8e54a2SToby Isaac   }
1519dd8e54a2SToby Isaac   ierr = DMForestGetPartitionOverlap(dm,&overlap);CHKERRQ(ierr);
1520*5a856986SBarry Smith   ierr = PetscOptionsBoundedInt("-dm_forest_partition_overlap","set the degree of partition overlap","DMForestSetPartitionOverlap",overlap,&overlap,&flg,0);CHKERRQ(ierr);
1521dd8e54a2SToby Isaac   if (flg) {
1522dd8e54a2SToby Isaac     ierr = DMForestSetPartitionOverlap(dm,overlap);CHKERRQ(ierr);
1523dd8e54a2SToby Isaac   }
1524a6121fbdSMatthew G. Knepley #if 0
1525*5a856986SBarry Smith   ierr = PetscOptionsBoundedInt("-dm_refine","equivalent to -dm_forest_set_minimum_refinement and -dm_forest_set_initial_refinement with the same value",NULL,minRefinement,&minRefinement,&flg,0);CHKERRQ(ierr);
1526a6121fbdSMatthew G. Knepley   if (flg) {
1527a6121fbdSMatthew G. Knepley     ierr = DMForestSetMinimumRefinement(dm,minRefinement);CHKERRQ(ierr);
1528a6121fbdSMatthew G. Knepley     ierr = DMForestSetInitialRefinement(dm,minRefinement);CHKERRQ(ierr);
1529a6121fbdSMatthew G. Knepley   }
1530*5a856986SBarry Smith   ierr = PetscOptionsBoundedInt("-dm_refine_hierarchy","equivalent to -dm_forest_set_minimum_refinement 0 and -dm_forest_set_initial_refinement",NULL,initRefinement,&initRefinement,&flg,0);CHKERRQ(ierr);
1531a6121fbdSMatthew G. Knepley   if (flg) {
1532a6121fbdSMatthew G. Knepley     ierr = DMForestSetMinimumRefinement(dm,0);CHKERRQ(ierr);
1533a6121fbdSMatthew G. Knepley     ierr = DMForestSetInitialRefinement(dm,initRefinement);CHKERRQ(ierr);
1534a6121fbdSMatthew G. Knepley   }
1535a6121fbdSMatthew G. Knepley #endif
1536dd8e54a2SToby Isaac   ierr = DMForestGetMinimumRefinement(dm,&minRefinement);CHKERRQ(ierr);
1537*5a856986SBarry Smith   ierr = PetscOptionsBoundedInt("-dm_forest_minimum_refinement","set the minimum level of refinement in the forest","DMForestSetMinimumRefinement",minRefinement,&minRefinement,&flg,0);CHKERRQ(ierr);
1538dd8e54a2SToby Isaac   if (flg) {
1539dd8e54a2SToby Isaac     ierr = DMForestSetMinimumRefinement(dm,minRefinement);CHKERRQ(ierr);
1540db4d5e8cSToby Isaac   }
154156ba9f64SToby Isaac   ierr = DMForestGetInitialRefinement(dm,&initRefinement);CHKERRQ(ierr);
1542*5a856986SBarry Smith   ierr = PetscOptionsBoundedInt("-dm_forest_initial_refinement","set the initial level of refinement in the forest","DMForestSetInitialRefinement",initRefinement,&initRefinement,&flg,0);CHKERRQ(ierr);
154356ba9f64SToby Isaac   if (flg) {
154456ba9f64SToby Isaac     ierr = DMForestSetInitialRefinement(dm,initRefinement);CHKERRQ(ierr);
154556ba9f64SToby Isaac   }
1546c7eeac06SToby Isaac   ierr = DMForestGetMaximumRefinement(dm,&maxRefinement);CHKERRQ(ierr);
1547*5a856986SBarry Smith   ierr = PetscOptionsBoundedInt("-dm_forest_maximum_refinement","set the maximum level of refinement in the forest","DMForestSetMaximumRefinement",maxRefinement,&maxRefinement,&flg,0);CHKERRQ(ierr);
1548c7eeac06SToby Isaac   if (flg) {
1549c7eeac06SToby Isaac     ierr = DMForestSetMaximumRefinement(dm,maxRefinement);CHKERRQ(ierr);
1550c7eeac06SToby Isaac   }
1551c7eeac06SToby Isaac   ierr = DMForestGetAdaptivityStrategy(dm,&adaptStrategy);CHKERRQ(ierr);
1552c7eeac06SToby Isaac   ierr = PetscOptionsString("-dm_forest_adaptivity_strategy","the forest's adaptivity-flag resolution strategy","DMForestSetAdaptivityStrategy",adaptStrategy,stringBuffer,256,&flg);CHKERRQ(ierr);
1553c7eeac06SToby Isaac   if (flg) {
1554c7eeac06SToby Isaac     ierr = DMForestSetAdaptivityStrategy(dm,(DMForestAdaptivityStrategy)stringBuffer);CHKERRQ(ierr);
1555c7eeac06SToby Isaac   }
1556c7eeac06SToby Isaac   ierr = DMForestGetGradeFactor(dm,&grade);CHKERRQ(ierr);
1557*5a856986SBarry Smith   ierr = PetscOptionsBoundedInt("-dm_forest_grade_factor","grade factor between neighboring cells","DMForestSetGradeFactor",grade,&grade,&flg,0);CHKERRQ(ierr);
1558c7eeac06SToby Isaac   if (flg) {
1559c7eeac06SToby Isaac     ierr = DMForestSetGradeFactor(dm,grade);CHKERRQ(ierr);
1560c7eeac06SToby Isaac   }
1561c7eeac06SToby Isaac   ierr = DMForestGetCellWeightFactor(dm,&weightsFactor);CHKERRQ(ierr);
1562c7eeac06SToby Isaac   ierr = PetscOptionsReal("-dm_forest_cell_weight_factor","multiplying weight factor for cell refinement","DMForestSetCellWeightFactor",weightsFactor,&weightsFactor,&flg);CHKERRQ(ierr);
1563c7eeac06SToby Isaac   if (flg) {
1564c7eeac06SToby Isaac     ierr = DMForestSetCellWeightFactor(dm,weightsFactor);CHKERRQ(ierr);
1565c7eeac06SToby Isaac   }
1566db4d5e8cSToby Isaac   ierr = PetscOptionsTail();CHKERRQ(ierr);
1567db4d5e8cSToby Isaac   PetscFunctionReturn(0);
1568db4d5e8cSToby Isaac }
1569db4d5e8cSToby Isaac 
1570276c5506SMatthew G. Knepley PetscErrorCode DMCreateSubDM_Forest(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
1571d8984e3bSMatthew G. Knepley {
1572d8984e3bSMatthew G. Knepley   PetscErrorCode ierr;
1573d8984e3bSMatthew G. Knepley 
1574d8984e3bSMatthew G. Knepley   PetscFunctionBegin;
1575d8984e3bSMatthew G. Knepley   if (subdm) {ierr = DMClone(dm, subdm);CHKERRQ(ierr);}
1576792b654fSMatthew G. Knepley   ierr = DMCreateSectionSubDM(dm, numFields, fields, is, subdm);CHKERRQ(ierr);
1577d8984e3bSMatthew G. Knepley   PetscFunctionReturn(0);
1578d8984e3bSMatthew G. Knepley }
1579d8984e3bSMatthew G. Knepley 
15805421bac9SToby Isaac PetscErrorCode DMRefine_Forest(DM dm, MPI_Comm comm, DM *dmRefined)
15815421bac9SToby Isaac {
15825421bac9SToby Isaac   DMLabel        refine;
15835421bac9SToby Isaac   DM             fineDM;
15845421bac9SToby Isaac   PetscErrorCode ierr;
15855421bac9SToby Isaac 
15865421bac9SToby Isaac   PetscFunctionBegin;
15875421bac9SToby Isaac   ierr = DMGetFineDM(dm,&fineDM);CHKERRQ(ierr);
15885421bac9SToby Isaac   if (fineDM) {
15895421bac9SToby Isaac     ierr       = PetscObjectReference((PetscObject)fineDM);CHKERRQ(ierr);
15905421bac9SToby Isaac     *dmRefined = fineDM;
15915421bac9SToby Isaac     PetscFunctionReturn(0);
15925421bac9SToby Isaac   }
15935421bac9SToby Isaac   ierr = DMForestTemplate(dm,comm,dmRefined);CHKERRQ(ierr);
15945421bac9SToby Isaac   ierr = DMGetLabel(dm,"refine",&refine);CHKERRQ(ierr);
15955421bac9SToby Isaac   if (!refine) {
1596d67d17b1SMatthew G. Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "refine",&refine);CHKERRQ(ierr);
1597a1b0c543SToby Isaac     ierr = DMLabelSetDefaultValue(refine,DM_ADAPT_REFINE);CHKERRQ(ierr);
1598d67d17b1SMatthew G. Knepley   } else {
1599d67d17b1SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) refine);CHKERRQ(ierr);
1600a1b0c543SToby Isaac   }
1601a1b0c543SToby Isaac   ierr = DMForestSetAdaptivityLabel(*dmRefined,refine);CHKERRQ(ierr);
1602a1b0c543SToby Isaac   ierr = DMLabelDestroy(&refine);CHKERRQ(ierr);
16035421bac9SToby Isaac   PetscFunctionReturn(0);
16045421bac9SToby Isaac }
16055421bac9SToby Isaac 
16065421bac9SToby Isaac PetscErrorCode DMCoarsen_Forest(DM dm, MPI_Comm comm, DM *dmCoarsened)
16075421bac9SToby Isaac {
16085421bac9SToby Isaac   DMLabel        coarsen;
16095421bac9SToby Isaac   DM             coarseDM;
16105421bac9SToby Isaac   PetscErrorCode ierr;
16115421bac9SToby Isaac 
16125421bac9SToby Isaac   PetscFunctionBegin;
16134098eed7SToby Isaac   {
16144098eed7SToby Isaac     PetscMPIInt mpiComparison;
16154098eed7SToby Isaac     MPI_Comm    dmcomm = PetscObjectComm((PetscObject)dm);
16164098eed7SToby Isaac 
16174098eed7SToby Isaac     ierr = MPI_Comm_compare(comm, dmcomm, &mpiComparison);CHKERRQ(ierr);
1618f885a11aSToby Isaac     if (mpiComparison != MPI_IDENT && mpiComparison != MPI_CONGRUENT) SETERRQ(dmcomm,PETSC_ERR_SUP,"No support for different communicators yet");
16194098eed7SToby Isaac   }
16205421bac9SToby Isaac   ierr = DMGetCoarseDM(dm,&coarseDM);CHKERRQ(ierr);
16215421bac9SToby Isaac   if (coarseDM) {
16225421bac9SToby Isaac     ierr         = PetscObjectReference((PetscObject)coarseDM);CHKERRQ(ierr);
16235421bac9SToby Isaac     *dmCoarsened = coarseDM;
16245421bac9SToby Isaac     PetscFunctionReturn(0);
16255421bac9SToby Isaac   }
16265421bac9SToby Isaac   ierr = DMForestTemplate(dm,comm,dmCoarsened);CHKERRQ(ierr);
16277ee90a76SStefano Zampini   ierr = DMForestSetAdaptivityPurpose(*dmCoarsened,DM_ADAPT_COARSEN);CHKERRQ(ierr);
16285421bac9SToby Isaac   ierr = DMGetLabel(dm,"coarsen",&coarsen);CHKERRQ(ierr);
16295421bac9SToby Isaac   if (!coarsen) {
1630d67d17b1SMatthew G. Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "coarsen",&coarsen);CHKERRQ(ierr);
1631a1b0c543SToby Isaac     ierr = DMLabelSetDefaultValue(coarsen,DM_ADAPT_COARSEN);CHKERRQ(ierr);
1632a1b0c543SToby Isaac   } else {
1633d67d17b1SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) coarsen);CHKERRQ(ierr);
16345421bac9SToby Isaac   }
1635a1b0c543SToby Isaac   ierr = DMForestSetAdaptivityLabel(*dmCoarsened,coarsen);CHKERRQ(ierr);
1636a1b0c543SToby Isaac   ierr = DMLabelDestroy(&coarsen);CHKERRQ(ierr);
16375421bac9SToby Isaac   PetscFunctionReturn(0);
16385421bac9SToby Isaac }
16395421bac9SToby Isaac 
1640a1b0c543SToby Isaac static PetscErrorCode DMAdaptLabel_Forest(DM dm, DMLabel label, DM *adaptedDM)
164109350103SToby Isaac {
164209350103SToby Isaac   PetscBool      success;
164309350103SToby Isaac   PetscErrorCode ierr;
164409350103SToby Isaac 
164509350103SToby Isaac   PetscFunctionBegin;
164609350103SToby Isaac   ierr = DMForestTemplate(dm,PetscObjectComm((PetscObject)dm),adaptedDM);CHKERRQ(ierr);
1647a1b0c543SToby Isaac   ierr = DMForestSetAdaptivityLabel(*adaptedDM,label);CHKERRQ(ierr);
164809350103SToby Isaac   ierr = DMSetUp(*adaptedDM);CHKERRQ(ierr);
164909350103SToby Isaac   ierr = DMForestGetAdaptivitySuccess(*adaptedDM,&success);CHKERRQ(ierr);
165009350103SToby Isaac   if (!success) {
165109350103SToby Isaac     ierr = DMDestroy(adaptedDM);CHKERRQ(ierr);
165209350103SToby Isaac     *adaptedDM = NULL;
165309350103SToby Isaac   }
165409350103SToby Isaac   PetscFunctionReturn(0);
165509350103SToby Isaac }
165609350103SToby Isaac 
1657d222f98bSToby Isaac static PetscErrorCode DMInitialize_Forest(DM dm)
1658d222f98bSToby Isaac {
1659d222f98bSToby Isaac   PetscErrorCode ierr;
1660d222f98bSToby Isaac 
1661d222f98bSToby Isaac   PetscFunctionBegin;
1662d222f98bSToby Isaac   ierr = PetscMemzero(dm->ops,sizeof(*(dm->ops)));CHKERRQ(ierr);
1663d222f98bSToby Isaac 
1664d222f98bSToby Isaac   dm->ops->clone          = DMClone_Forest;
1665d222f98bSToby Isaac   dm->ops->setfromoptions = DMSetFromOptions_Forest;
1666d222f98bSToby Isaac   dm->ops->destroy        = DMDestroy_Forest;
1667d8984e3bSMatthew G. Knepley   dm->ops->createsubdm    = DMCreateSubDM_Forest;
16685421bac9SToby Isaac   dm->ops->refine         = DMRefine_Forest;
16695421bac9SToby Isaac   dm->ops->coarsen        = DMCoarsen_Forest;
16700d1cd5e0SMatthew G. Knepley   dm->ops->adaptlabel     = DMAdaptLabel_Forest;
1671d222f98bSToby Isaac   PetscFunctionReturn(0);
1672d222f98bSToby Isaac }
1673d222f98bSToby Isaac 
16749be51f97SToby Isaac /*MC
16759be51f97SToby Isaac 
1676bae1f979SBarry Smith      DMFOREST = "forest" - A DM object that encapsulates a hierarchically refined mesh.  Forests usually have a base DM
1677bae1f979SBarry Smith   (see DMForestGetBaseDM()), from which it is refined.  The refinement and partitioning of forests is considered
1678bae1f979SBarry Smith   immutable after DMSetUp() is called.  To adapt a mesh, one should call DMForestTemplate() to create a new mesh that
1679bae1f979SBarry Smith   will default to being identical to it, specify how that mesh should differ, and then calling DMSetUp() on the new
1680bae1f979SBarry Smith   mesh.
1681bae1f979SBarry Smith 
1682bae1f979SBarry Smith   To specify that a mesh should be refined or coarsened from the previous mesh, a label should be defined on the
1683bae1f979SBarry Smith   previous mesh whose values indicate which cells should be refined (DM_ADAPT_REFINE) or coarsened (DM_ADAPT_COARSEN)
1684bae1f979SBarry Smith   and how (subtypes are free to allow additional values for things like anisotropic refinement).  The label should be
1685bae1f979SBarry Smith   given to the *new* mesh with DMForestSetAdaptivityLabel().
16869be51f97SToby Isaac 
16879be51f97SToby Isaac   Level: advanced
16889be51f97SToby Isaac 
16899be51f97SToby Isaac .seealso: DMType, DMCreate(), DMSetType(), DMForestGetBaseDM(), DMForestSetBaseDM(), DMForestTemplate(), DMForestSetAdaptivityLabel()
16909be51f97SToby Isaac M*/
16919be51f97SToby Isaac 
1692db4d5e8cSToby Isaac PETSC_EXTERN PetscErrorCode DMCreate_Forest(DM dm)
1693db4d5e8cSToby Isaac {
1694db4d5e8cSToby Isaac   DM_Forest      *forest;
1695db4d5e8cSToby Isaac   PetscErrorCode ierr;
1696db4d5e8cSToby Isaac 
1697db4d5e8cSToby Isaac   PetscFunctionBegin;
1698db4d5e8cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1699db4d5e8cSToby Isaac   ierr                         = PetscNewLog(dm,&forest);CHKERRQ(ierr);
1700db4d5e8cSToby Isaac   dm->dim                      = 0;
1701db4d5e8cSToby Isaac   dm->data                     = forest;
1702db4d5e8cSToby Isaac   forest->refct                = 1;
1703db4d5e8cSToby Isaac   forest->data                 = NULL;
1704db4d5e8cSToby Isaac   forest->topology             = NULL;
1705cd3c525cSToby Isaac   forest->adapt                = NULL;
1706db4d5e8cSToby Isaac   forest->base                 = NULL;
17076a87ffbfSToby Isaac   forest->adaptPurpose         = DM_ADAPT_DETERMINE;
1708db4d5e8cSToby Isaac   forest->adjDim               = PETSC_DEFAULT;
1709db4d5e8cSToby Isaac   forest->overlap              = PETSC_DEFAULT;
1710db4d5e8cSToby Isaac   forest->minRefinement        = PETSC_DEFAULT;
1711db4d5e8cSToby Isaac   forest->maxRefinement        = PETSC_DEFAULT;
171256ba9f64SToby Isaac   forest->initRefinement       = PETSC_DEFAULT;
1713c7eeac06SToby Isaac   forest->cStart               = PETSC_DETERMINE;
1714c7eeac06SToby Isaac   forest->cEnd                 = PETSC_DETERMINE;
1715cd3c525cSToby Isaac   forest->cellSF               = NULL;
1716ebdf65a2SToby Isaac   forest->adaptLabel           = NULL;
1717db4d5e8cSToby Isaac   forest->gradeFactor          = 2;
1718db4d5e8cSToby Isaac   forest->cellWeights          = NULL;
1719db4d5e8cSToby Isaac   forest->cellWeightsCopyMode  = PETSC_USE_POINTER;
1720db4d5e8cSToby Isaac   forest->weightsFactor        = 1.;
1721db4d5e8cSToby Isaac   forest->weightCapacity       = 1.;
1722a73e2921SToby Isaac   ierr                         = DMForestSetAdaptivityStrategy(dm,DMFORESTADAPTALL);CHKERRQ(ierr);
1723d222f98bSToby Isaac   ierr                         = DMInitialize_Forest(dm);CHKERRQ(ierr);
1724db4d5e8cSToby Isaac   PetscFunctionReturn(0);
1725db4d5e8cSToby Isaac }
1726