19be51f97SToby Isaac #include <petsc/private/dmforestimpl.h> /*I "petscdmforest.h" I*/ 29be51f97SToby Isaac #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3ef19d27cSToby Isaac #include <petscsf.h> 4db4d5e8cSToby Isaac 527d4645fSToby Isaac PetscBool DMForestPackageInitialized = PETSC_FALSE; 627d4645fSToby Isaac 727d4645fSToby Isaac typedef struct _DMForestTypeLink*DMForestTypeLink; 827d4645fSToby Isaac 927d4645fSToby Isaac struct _DMForestTypeLink 1027d4645fSToby Isaac { 1127d4645fSToby Isaac char *name; 1227d4645fSToby Isaac DMForestTypeLink next; 1327d4645fSToby Isaac }; 1427d4645fSToby Isaac 1527d4645fSToby Isaac DMForestTypeLink DMForestTypeList; 1627d4645fSToby Isaac 1727d4645fSToby Isaac #undef __FUNCT__ 1827d4645fSToby Isaac #define __FUNCT__ "DMForestPackageFinalize" 1927d4645fSToby Isaac static PetscErrorCode DMForestPackageFinalize(void) 2027d4645fSToby Isaac { 2127d4645fSToby Isaac DMForestTypeLink oldLink, link = DMForestTypeList; 2227d4645fSToby Isaac PetscErrorCode ierr; 2327d4645fSToby Isaac 2427d4645fSToby Isaac PetscFunctionBegin; 2527d4645fSToby Isaac while (link) { 2627d4645fSToby Isaac oldLink = link; 27f416af30SBarry Smith ierr = PetscFree(oldLink->name);CHKERRQ(ierr); 2827d4645fSToby Isaac link = oldLink->next; 2927d4645fSToby Isaac ierr = PetscFree(oldLink);CHKERRQ(ierr); 3027d4645fSToby Isaac } 3127d4645fSToby Isaac PetscFunctionReturn(0); 3227d4645fSToby Isaac } 3327d4645fSToby Isaac 3427d4645fSToby Isaac #undef __FUNCT__ 3527d4645fSToby Isaac #define __FUNCT__ "DMForestPackageInitialize" 3627d4645fSToby Isaac static PetscErrorCode DMForestPackageInitialize(void) 3727d4645fSToby Isaac { 3827d4645fSToby Isaac PetscErrorCode ierr; 3927d4645fSToby Isaac 4027d4645fSToby Isaac PetscFunctionBegin; 4127d4645fSToby Isaac if (DMForestPackageInitialized) PetscFunctionReturn(0); 4227d4645fSToby Isaac DMForestPackageInitialized = PETSC_TRUE; 43f885a11aSToby Isaac 4427d4645fSToby Isaac ierr = DMForestRegisterType(DMFOREST);CHKERRQ(ierr); 4527d4645fSToby Isaac ierr = PetscRegisterFinalize(DMForestPackageFinalize);CHKERRQ(ierr); 4627d4645fSToby Isaac PetscFunctionReturn(0); 4727d4645fSToby Isaac } 4827d4645fSToby Isaac 4927d4645fSToby Isaac #undef __FUNCT__ 5027d4645fSToby Isaac #define __FUNCT__ "DMForestRegisterType" 519be51f97SToby Isaac /*@C 529be51f97SToby Isaac DMForestRegisterType - Registers a DMType as a subtype of DMFOREST (so that DMIsForest() will be correct) 539be51f97SToby Isaac 549be51f97SToby Isaac Not Collective 559be51f97SToby Isaac 569be51f97SToby Isaac Input parameter: 579be51f97SToby Isaac . name - the name of the type 589be51f97SToby Isaac 599be51f97SToby Isaac Level: advanced 609be51f97SToby Isaac 619be51f97SToby Isaac .seealso: DMFOREST, DMIsForest() 629be51f97SToby Isaac @*/ 6327d4645fSToby Isaac PetscErrorCode DMForestRegisterType(DMType name) 6427d4645fSToby Isaac { 6527d4645fSToby Isaac DMForestTypeLink link; 6627d4645fSToby Isaac PetscErrorCode ierr; 6727d4645fSToby Isaac 6827d4645fSToby Isaac PetscFunctionBegin; 6927d4645fSToby Isaac ierr = DMForestPackageInitialize();CHKERRQ(ierr); 7027d4645fSToby Isaac ierr = PetscNew(&link);CHKERRQ(ierr); 7127d4645fSToby Isaac ierr = PetscStrallocpy(name,&link->name);CHKERRQ(ierr); 7227d4645fSToby Isaac link->next = DMForestTypeList; 7327d4645fSToby Isaac DMForestTypeList = link; 7427d4645fSToby Isaac PetscFunctionReturn(0); 7527d4645fSToby Isaac } 7627d4645fSToby Isaac 7727d4645fSToby Isaac #undef __FUNCT__ 7827d4645fSToby Isaac #define __FUNCT__ "DMIsForest" 799be51f97SToby Isaac /*@ 809be51f97SToby Isaac DMIsForest - Check whether a DM uses the DMFOREST interface for hierarchically-refined meshes 819be51f97SToby Isaac 829be51f97SToby Isaac Not Collective 839be51f97SToby Isaac 849be51f97SToby Isaac Input parameter: 859be51f97SToby Isaac . dm - the DM object 869be51f97SToby Isaac 879be51f97SToby Isaac Output parameter: 889be51f97SToby Isaac . isForest - whether dm is a subtype of DMFOREST 899be51f97SToby Isaac 909be51f97SToby Isaac Level: intermediate 919be51f97SToby Isaac 929be51f97SToby Isaac .seealso: DMFOREST, DMForestRegisterType() 939be51f97SToby Isaac @*/ 9427d4645fSToby Isaac PetscErrorCode DMIsForest(DM dm, PetscBool *isForest) 9527d4645fSToby Isaac { 9627d4645fSToby Isaac DMForestTypeLink link = DMForestTypeList; 9727d4645fSToby Isaac PetscErrorCode ierr; 9827d4645fSToby Isaac 9927d4645fSToby Isaac PetscFunctionBegin; 10027d4645fSToby Isaac while (link) { 10127d4645fSToby Isaac PetscBool sameType; 10227d4645fSToby Isaac ierr = PetscObjectTypeCompare((PetscObject)dm,link->name,&sameType);CHKERRQ(ierr); 10327d4645fSToby Isaac if (sameType) { 10427d4645fSToby Isaac *isForest = PETSC_TRUE; 10527d4645fSToby Isaac PetscFunctionReturn(0); 10627d4645fSToby Isaac } 10727d4645fSToby Isaac link = link->next; 10827d4645fSToby Isaac } 10927d4645fSToby Isaac *isForest = PETSC_FALSE; 11027d4645fSToby Isaac PetscFunctionReturn(0); 11127d4645fSToby Isaac } 11227d4645fSToby Isaac 113db4d5e8cSToby Isaac #undef __FUNCT__ 114a0452a8eSToby Isaac #define __FUNCT__ "DMForestTemplate" 1159be51f97SToby Isaac /*@ 1169be51f97SToby Isaac DMForestTemplate - Create a new DM that will be adapted from a source DM. The new DM reproduces the configuration 1179be51f97SToby Isaac of the source, but is not yet setup, so that the user can then define only the ways that the new DM should differ 1189be51f97SToby Isaac (by, e.g., refinement or repartitioning). The source DM is also set as the adaptivity source DM of the new DM (see 1199be51f97SToby Isaac DMForestSetAdaptivityForest()). 1209be51f97SToby Isaac 1219be51f97SToby Isaac Collective on dm 1229be51f97SToby Isaac 1239be51f97SToby Isaac Input Parameters: 1249be51f97SToby Isaac + dm - the source DM object 1259be51f97SToby Isaac - comm - the communicator for the new DM (this communicator is currently ignored, but is present so that DMForestTemplate() can be used within DMCoarsen()) 1269be51f97SToby Isaac 1279be51f97SToby Isaac Output Parameter: 1289be51f97SToby Isaac . tdm - the new DM object 1299be51f97SToby Isaac 1309be51f97SToby Isaac Level: intermediate 1319be51f97SToby Isaac 1329be51f97SToby Isaac .seealso: DMForestSetAdaptivityForest() 1339be51f97SToby Isaac @*/ 1349be51f97SToby Isaac PetscErrorCode DMForestTemplate(DM dm, MPI_Comm comm, DM *tdm) 135a0452a8eSToby Isaac { 136a0452a8eSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 13720e8089bSToby Isaac DMType type; 138a0452a8eSToby Isaac DM base; 139a0452a8eSToby Isaac DMForestTopology topology; 140a0452a8eSToby Isaac PetscInt dim, overlap, ref, factor; 141a0452a8eSToby Isaac DMForestAdaptivityStrategy strat; 142795844e7SToby Isaac PetscDS ds; 143795844e7SToby Isaac void *ctx; 14449fc9a2fSToby Isaac PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void*); 1453e58adeeSToby Isaac void *mapCtx; 146a0452a8eSToby Isaac PetscErrorCode ierr; 147a0452a8eSToby Isaac 148a0452a8eSToby Isaac PetscFunctionBegin; 149a0452a8eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15020e8089bSToby Isaac ierr = DMCreate(PetscObjectComm((PetscObject)dm),tdm);CHKERRQ(ierr); 15120e8089bSToby Isaac ierr = DMGetType(dm,&type);CHKERRQ(ierr); 15220e8089bSToby Isaac ierr = DMSetType(*tdm,type);CHKERRQ(ierr); 153a0452a8eSToby Isaac ierr = DMForestGetBaseDM(dm,&base);CHKERRQ(ierr); 15420e8089bSToby Isaac ierr = DMForestSetBaseDM(*tdm,base);CHKERRQ(ierr); 155a0452a8eSToby Isaac ierr = DMForestGetTopology(dm,&topology);CHKERRQ(ierr); 15620e8089bSToby Isaac ierr = DMForestSetTopology(*tdm,topology);CHKERRQ(ierr); 157a0452a8eSToby Isaac ierr = DMForestGetAdjacencyDimension(dm,&dim);CHKERRQ(ierr); 15820e8089bSToby Isaac ierr = DMForestSetAdjacencyDimension(*tdm,dim);CHKERRQ(ierr); 159a0452a8eSToby Isaac ierr = DMForestGetPartitionOverlap(dm,&overlap);CHKERRQ(ierr); 16020e8089bSToby Isaac ierr = DMForestSetPartitionOverlap(*tdm,overlap);CHKERRQ(ierr); 161a0452a8eSToby Isaac ierr = DMForestGetMinimumRefinement(dm,&ref);CHKERRQ(ierr); 16220e8089bSToby Isaac ierr = DMForestSetMinimumRefinement(*tdm,ref);CHKERRQ(ierr); 163a0452a8eSToby Isaac ierr = DMForestGetMaximumRefinement(dm,&ref);CHKERRQ(ierr); 16420e8089bSToby Isaac ierr = DMForestSetMaximumRefinement(*tdm,ref);CHKERRQ(ierr); 165a0452a8eSToby Isaac ierr = DMForestGetAdaptivityStrategy(dm,&strat);CHKERRQ(ierr); 16620e8089bSToby Isaac ierr = DMForestSetAdaptivityStrategy(*tdm,strat);CHKERRQ(ierr); 167a0452a8eSToby Isaac ierr = DMForestGetGradeFactor(dm,&factor);CHKERRQ(ierr); 16820e8089bSToby Isaac ierr = DMForestSetGradeFactor(*tdm,factor);CHKERRQ(ierr); 1693e58adeeSToby Isaac ierr = DMForestGetBaseCoordinateMapping(dm,&map,&mapCtx);CHKERRQ(ierr); 1705e8c540aSToby Isaac ierr = DMForestSetBaseCoordinateMapping(*tdm,map,mapCtx);CHKERRQ(ierr); 171a0452a8eSToby Isaac if (forest->ftemplate) { 17220e8089bSToby Isaac ierr = (forest->ftemplate)(dm, *tdm);CHKERRQ(ierr); 173a0452a8eSToby Isaac } 17420e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(*tdm,dm);CHKERRQ(ierr); 175795844e7SToby Isaac ierr = DMGetDS(dm,&ds);CHKERRQ(ierr); 176795844e7SToby Isaac ierr = DMSetDS(*tdm,ds);CHKERRQ(ierr); 177795844e7SToby Isaac ierr = DMGetApplicationContext(dm,&ctx);CHKERRQ(ierr); 178795844e7SToby Isaac ierr = DMSetApplicationContext(*tdm,&ctx);CHKERRQ(ierr); 179795844e7SToby Isaac if (dm->maxCell) { 180795844e7SToby Isaac const PetscReal *maxCell, *L; 181795844e7SToby Isaac const DMBoundaryType *bd; 182795844e7SToby Isaac 183795844e7SToby Isaac ierr = DMGetPeriodicity(dm,&maxCell,&L,&bd);CHKERRQ(ierr); 184795844e7SToby Isaac ierr = DMSetPeriodicity(*tdm,maxCell,L,bd);CHKERRQ(ierr); 185795844e7SToby Isaac } 186a0452a8eSToby Isaac PetscFunctionReturn(0); 187a0452a8eSToby Isaac } 188a0452a8eSToby Isaac 18901d9d024SToby Isaac static PetscErrorCode DMInitialize_Forest(DM dm); 19001d9d024SToby Isaac 191a0452a8eSToby Isaac #undef __FUNCT__ 192db4d5e8cSToby Isaac #define __FUNCT__ "DMClone_Forest" 193db4d5e8cSToby Isaac PETSC_EXTERN PetscErrorCode DMClone_Forest(DM dm, DM *newdm) 194db4d5e8cSToby Isaac { 195db4d5e8cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 196db4d5e8cSToby Isaac const char *type; 197db4d5e8cSToby Isaac PetscErrorCode ierr; 198db4d5e8cSToby Isaac 199db4d5e8cSToby Isaac PetscFunctionBegin; 200db4d5e8cSToby Isaac forest->refct++; 201db4d5e8cSToby Isaac (*newdm)->data = forest; 202db4d5e8cSToby Isaac ierr = PetscObjectGetType((PetscObject) dm, &type);CHKERRQ(ierr); 203db4d5e8cSToby Isaac ierr = PetscObjectChangeTypeName((PetscObject) *newdm, type);CHKERRQ(ierr); 20401d9d024SToby Isaac ierr = DMInitialize_Forest(*newdm);CHKERRQ(ierr); 205db4d5e8cSToby Isaac PetscFunctionReturn(0); 206db4d5e8cSToby Isaac } 207db4d5e8cSToby Isaac 208db4d5e8cSToby Isaac #undef __FUNCT__ 209db4d5e8cSToby Isaac #define __FUNCT__ "DMDestroy_Forest" 210d222f98bSToby Isaac static PetscErrorCode DMDestroy_Forest(DM dm) 211db4d5e8cSToby Isaac { 212db4d5e8cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 213db4d5e8cSToby Isaac PetscErrorCode ierr; 214db4d5e8cSToby Isaac 215db4d5e8cSToby Isaac PetscFunctionBegin; 216db4d5e8cSToby Isaac if (--forest->refct > 0) PetscFunctionReturn(0); 217d222f98bSToby Isaac if (forest->destroy) {ierr = forest->destroy(dm);CHKERRQ(ierr);} 218db4d5e8cSToby Isaac ierr = PetscSFDestroy(&forest->cellSF);CHKERRQ(ierr); 2190f17b9e3SToby Isaac ierr = PetscSFDestroy(&forest->preCoarseToFine);CHKERRQ(ierr); 2200f17b9e3SToby Isaac ierr = PetscSFDestroy(&forest->coarseToPreFine);CHKERRQ(ierr); 221ebdf65a2SToby Isaac ierr = PetscFree(forest->adaptLabel);CHKERRQ(ierr); 2229a81d013SToby Isaac ierr = PetscFree(forest->adaptStrategy);CHKERRQ(ierr); 22356ba9f64SToby Isaac ierr = DMDestroy(&forest->base);CHKERRQ(ierr); 224ba936b91SToby Isaac ierr = DMDestroy(&forest->adapt);CHKERRQ(ierr); 22530f902e7SToby Isaac ierr = PetscFree(forest->topology);CHKERRQ(ierr); 22630f902e7SToby Isaac ierr = PetscFree(forest);CHKERRQ(ierr); 227db4d5e8cSToby Isaac PetscFunctionReturn(0); 228db4d5e8cSToby Isaac } 229db4d5e8cSToby Isaac 230db4d5e8cSToby Isaac #undef __FUNCT__ 231dd8e54a2SToby Isaac #define __FUNCT__ "DMForestSetTopology" 2329be51f97SToby Isaac /*@C 2339be51f97SToby Isaac DMForestSetTopology - Set the topology of a DMForest during the pre-setup phase. The topology is a string (e.g. 2349be51f97SToby Isaac "cube", "shell") and can be interpreted by subtypes of DMFOREST) to construct the base DM of a forest durint 2359be51f97SToby Isaac DMSetUp(). 2369be51f97SToby Isaac 2379be51f97SToby Isaac Logically collective on dm 2389be51f97SToby Isaac 2399be51f97SToby Isaac Input parameters: 2409be51f97SToby Isaac + dm - the forest 2419be51f97SToby Isaac - topology - the topology of the forest 2429be51f97SToby Isaac 2439be51f97SToby Isaac Level: intermediate 2449be51f97SToby Isaac 2459be51f97SToby Isaac .seealso(): DMForestGetTopology(), DMForestSetBaseDM() 2469be51f97SToby Isaac @*/ 247dd8e54a2SToby Isaac PetscErrorCode DMForestSetTopology(DM dm, DMForestTopology topology) 248db4d5e8cSToby Isaac { 249db4d5e8cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 250db4d5e8cSToby Isaac PetscErrorCode ierr; 251db4d5e8cSToby Isaac 252db4d5e8cSToby Isaac PetscFunctionBegin; 253db4d5e8cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 254ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the topology after setup"); 255dd8e54a2SToby Isaac ierr = PetscFree(forest->topology);CHKERRQ(ierr); 256dd8e54a2SToby Isaac ierr = PetscStrallocpy((const char*)topology,(char**) &forest->topology);CHKERRQ(ierr); 257db4d5e8cSToby Isaac PetscFunctionReturn(0); 258db4d5e8cSToby Isaac } 259db4d5e8cSToby Isaac 260db4d5e8cSToby Isaac #undef __FUNCT__ 261dd8e54a2SToby Isaac #define __FUNCT__ "DMForestGetTopology" 2629be51f97SToby Isaac /*@C 2639be51f97SToby Isaac DMForestGetTopology - Get a string describing the topology of a DMForest. 2649be51f97SToby Isaac 2659be51f97SToby Isaac Not collective 2669be51f97SToby Isaac 2679be51f97SToby Isaac Input parameter: 2689be51f97SToby Isaac . dm - the forest 2699be51f97SToby Isaac 2709be51f97SToby Isaac Output parameter: 2719be51f97SToby Isaac . topology - the topology of the forest (e.g., 'cube', 'shell') 2729be51f97SToby Isaac 2739be51f97SToby Isaac Level: intermediate 2749be51f97SToby Isaac 2759be51f97SToby Isaac .seealso: DMForestSetTopology() 2769be51f97SToby Isaac @*/ 277dd8e54a2SToby Isaac PetscErrorCode DMForestGetTopology(DM dm, DMForestTopology *topology) 278dd8e54a2SToby Isaac { 279dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 280dd8e54a2SToby Isaac 281dd8e54a2SToby Isaac PetscFunctionBegin; 282dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 283dd8e54a2SToby Isaac PetscValidPointer(topology,2); 284dd8e54a2SToby Isaac *topology = forest->topology; 285dd8e54a2SToby Isaac PetscFunctionReturn(0); 286dd8e54a2SToby Isaac } 287dd8e54a2SToby Isaac 288dd8e54a2SToby Isaac #undef __FUNCT__ 289dd8e54a2SToby Isaac #define __FUNCT__ "DMForestSetBaseDM" 2909be51f97SToby Isaac /*@ 2919be51f97SToby Isaac DMForestSetBaseDM - During the pre-setup phase, set the DM that defines the base mesh of a DMForest forest. The 2929be51f97SToby Isaac forest will be hierarchically refined from the base, and all refinements/coarsenings of the forest will share its 2939be51f97SToby Isaac base. In general, two forest must share a bse to be comparable, to do things like construct interpolators. 2949be51f97SToby Isaac 2959be51f97SToby Isaac Logically collective on dm 2969be51f97SToby Isaac 2979be51f97SToby Isaac Input Parameters: 2989be51f97SToby Isaac + dm - the forest 2999be51f97SToby Isaac - base - the base DM of the forest 3009be51f97SToby Isaac 3019be51f97SToby Isaac Level: intermediate 3029be51f97SToby Isaac 3039be51f97SToby Isaac .seealso(): DMForestGetBaseDM() 3049be51f97SToby Isaac @*/ 305dd8e54a2SToby Isaac PetscErrorCode DMForestSetBaseDM(DM dm, DM base) 306dd8e54a2SToby Isaac { 307dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 308dd8e54a2SToby Isaac PetscInt dim, dimEmbed; 309dd8e54a2SToby Isaac PetscErrorCode ierr; 310dd8e54a2SToby Isaac 311dd8e54a2SToby Isaac PetscFunctionBegin; 312dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 313ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the base after setup"); 314dd8e54a2SToby Isaac ierr = PetscObjectReference((PetscObject)base);CHKERRQ(ierr); 315dd8e54a2SToby Isaac ierr = DMDestroy(&forest->base);CHKERRQ(ierr); 316dd8e54a2SToby Isaac forest->base = base; 317a0452a8eSToby Isaac if (base) { 318a0452a8eSToby Isaac PetscValidHeaderSpecific(base, DM_CLASSID, 2); 319dd8e54a2SToby Isaac ierr = DMGetDimension(base,&dim);CHKERRQ(ierr); 320dd8e54a2SToby Isaac ierr = DMSetDimension(dm,dim);CHKERRQ(ierr); 321dd8e54a2SToby Isaac ierr = DMGetCoordinateDim(base,&dimEmbed);CHKERRQ(ierr); 322dd8e54a2SToby Isaac ierr = DMSetCoordinateDim(dm,dimEmbed);CHKERRQ(ierr); 323a0452a8eSToby Isaac } 324dd8e54a2SToby Isaac PetscFunctionReturn(0); 325dd8e54a2SToby Isaac } 326dd8e54a2SToby Isaac 327dd8e54a2SToby Isaac #undef __FUNCT__ 328dd8e54a2SToby Isaac #define __FUNCT__ "DMForestGetBaseDM" 3299be51f97SToby Isaac /*@ 3309be51f97SToby Isaac DMForestGetBaseDM - Get the base DM of a DMForest forest. The forest will be hierarchically refined from the base, 3319be51f97SToby Isaac and all refinements/coarsenings of the forest will share its base. In general, two forest must share a bse to be 3329be51f97SToby Isaac comparable, to do things like construct interpolators. 3339be51f97SToby Isaac 3349be51f97SToby Isaac Not collective 3359be51f97SToby Isaac 3369be51f97SToby Isaac Input Parameter: 3379be51f97SToby Isaac . dm - the forest 3389be51f97SToby Isaac 3399be51f97SToby Isaac Output Parameter: 3409be51f97SToby Isaac . base - the base DM of the forest 3419be51f97SToby Isaac 3429be51f97SToby Isaac Level: intermediate 3439be51f97SToby Isaac 3449be51f97SToby Isaac .seealso(); DMForestSetBaseDM() 3459be51f97SToby Isaac @*/ 346dd8e54a2SToby Isaac PetscErrorCode DMForestGetBaseDM(DM dm, DM *base) 347dd8e54a2SToby Isaac { 348dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 349dd8e54a2SToby Isaac 350dd8e54a2SToby Isaac PetscFunctionBegin; 351dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 352dd8e54a2SToby Isaac PetscValidPointer(base, 2); 353dd8e54a2SToby Isaac *base = forest->base; 354dd8e54a2SToby Isaac PetscFunctionReturn(0); 355dd8e54a2SToby Isaac } 356dd8e54a2SToby Isaac 357dd8e54a2SToby Isaac #undef __FUNCT__ 358cf38a08cSToby Isaac #define __FUNCT__ "DMForestSetBaseCoordinateMapping" 35999478f86SToby Isaac PetscErrorCode DMForestSetBaseCoordinateMapping(DM dm, PetscErrorCode (*func)(DM,PetscInt,PetscInt,const PetscReal [],PetscReal [],void*),void *ctx) 360cf38a08cSToby Isaac { 361cf38a08cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 362cf38a08cSToby Isaac 363cf38a08cSToby Isaac PetscFunctionBegin; 364cf38a08cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 365cf38a08cSToby Isaac forest->mapcoordinates = func; 366cf38a08cSToby Isaac forest->mapcoordinatesctx = ctx; 367cf38a08cSToby Isaac PetscFunctionReturn(0); 368cf38a08cSToby Isaac } 369cf38a08cSToby Isaac 370cf38a08cSToby Isaac #undef __FUNCT__ 371cf38a08cSToby Isaac #define __FUNCT__ "DMForestGetBaseCoordinateMapping" 37299478f86SToby Isaac PetscErrorCode DMForestGetBaseCoordinateMapping(DM dm, PetscErrorCode (**func) (DM,PetscInt,PetscInt,const PetscReal [],PetscReal [],void*),void *ctx) 373cf38a08cSToby Isaac { 374cf38a08cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 375cf38a08cSToby Isaac 376cf38a08cSToby Isaac PetscFunctionBegin; 377cf38a08cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 378cf38a08cSToby Isaac if (func) *func = forest->mapcoordinates; 379cf38a08cSToby Isaac if (ctx) *((void**) ctx) = forest->mapcoordinatesctx; 380cf38a08cSToby Isaac PetscFunctionReturn(0); 381cf38a08cSToby Isaac } 382cf38a08cSToby Isaac 383cf38a08cSToby Isaac #undef __FUNCT__ 384ba936b91SToby Isaac #define __FUNCT__ "DMForestSetAdaptivityForest" 3859be51f97SToby Isaac /*@ 3869be51f97SToby Isaac DMForestSetAdaptivityForest - During the pre-setup phase, set the forest from which the current forest will be 3879be51f97SToby Isaac adapted (e.g., the current forest will be refined/coarsened/repartitioned from it) im DMSetUp(). Usually not needed 3889be51f97SToby Isaac by users directly: DMForestTemplate() constructs a new forest to be adapted from an old forest and calls this 3899be51f97SToby Isaac routine. 3909be51f97SToby Isaac 3919be51f97SToby Isaac Logically collective on dm 3929be51f97SToby Isaac 3939be51f97SToby Isaac Input Parameter: 3949be51f97SToby Isaac + dm - the new forest, which will be constructed from adapt 3959be51f97SToby Isaac - adapt - the old forest 3969be51f97SToby Isaac 3979be51f97SToby Isaac Level: intermediate 3989be51f97SToby Isaac 3999be51f97SToby Isaac .seealso: DMForestGetAdaptivityForest(), DMForestSetAdaptivityPurpose() 4009be51f97SToby Isaac @*/ 401ba936b91SToby Isaac PetscErrorCode DMForestSetAdaptivityForest(DM dm,DM adapt) 402dd8e54a2SToby Isaac { 403ba936b91SToby Isaac DM_Forest *forest; 404dd8e54a2SToby Isaac PetscErrorCode ierr; 405dd8e54a2SToby Isaac 406dd8e54a2SToby Isaac PetscFunctionBegin; 407dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 408ba936b91SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 409ba936b91SToby Isaac forest = (DM_Forest*) dm->data; 410ba936b91SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the adaptation forest after setup"); 41126d9498aSToby Isaac switch (forest->adaptPurpose) { 41226d9498aSToby Isaac case DM_FOREST_KEEP: 413ba936b91SToby Isaac ierr = PetscObjectReference((PetscObject)adapt);CHKERRQ(ierr); 414ba936b91SToby Isaac ierr = DMDestroy(&(forest->adapt));CHKERRQ(ierr); 415ba936b91SToby Isaac forest->adapt = adapt; 41626d9498aSToby Isaac break; 41726d9498aSToby Isaac case DM_FOREST_REFINE: 41826d9498aSToby Isaac ierr = DMSetCoarseDM(dm,adapt);CHKERRQ(ierr); 41926d9498aSToby Isaac break; 42026d9498aSToby Isaac case DM_FOREST_COARSEN: 42126d9498aSToby Isaac ierr = DMSetFineDM(dm,adapt);CHKERRQ(ierr); 42226d9498aSToby Isaac break; 42326d9498aSToby Isaac default: 42426d9498aSToby Isaac SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid adaptivity purpose"); 42526d9498aSToby Isaac } 426dd8e54a2SToby Isaac PetscFunctionReturn(0); 427dd8e54a2SToby Isaac } 428dd8e54a2SToby Isaac 429dd8e54a2SToby Isaac #undef __FUNCT__ 430ba936b91SToby Isaac #define __FUNCT__ "DMForestGetAdaptivityForest" 4319be51f97SToby Isaac /*@ 4329be51f97SToby Isaac DMForestGetAdaptivityForest - Get the forest from which the current forest is adapted. 4339be51f97SToby Isaac 4349be51f97SToby Isaac Not collective 4359be51f97SToby Isaac 4369be51f97SToby Isaac Input Parameter: 4379be51f97SToby Isaac . dm - the forest 4389be51f97SToby Isaac 4399be51f97SToby Isaac Output Parameter: 4409be51f97SToby Isaac . adapt - the forest from which dm is/was adapted 4419be51f97SToby Isaac 4429be51f97SToby Isaac Level: intermediate 4439be51f97SToby Isaac 4449be51f97SToby Isaac .seealso: DMForestSetAdaptivityForest(), DMForestSetAdaptivityPurpose() 4459be51f97SToby Isaac @*/ 446ba936b91SToby Isaac PetscErrorCode DMForestGetAdaptivityForest(DM dm, DM *adapt) 447dd8e54a2SToby Isaac { 448ba936b91SToby Isaac DM_Forest *forest; 44926d9498aSToby Isaac PetscErrorCode ierr; 450dd8e54a2SToby Isaac 451dd8e54a2SToby Isaac PetscFunctionBegin; 452dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 453ba936b91SToby Isaac forest = (DM_Forest*) dm->data; 45426d9498aSToby Isaac switch (forest->adaptPurpose) { 45526d9498aSToby Isaac case DM_FOREST_KEEP: 456ba936b91SToby Isaac *adapt = forest->adapt; 45726d9498aSToby Isaac break; 45826d9498aSToby Isaac case DM_FOREST_REFINE: 45926d9498aSToby Isaac ierr = DMGetCoarseDM(dm,adapt);CHKERRQ(ierr); 46026d9498aSToby Isaac break; 46126d9498aSToby Isaac case DM_FOREST_COARSEN: 46226d9498aSToby Isaac ierr = DMGetFineDM(dm,adapt);CHKERRQ(ierr); 46326d9498aSToby Isaac break; 46426d9498aSToby Isaac default: 46526d9498aSToby Isaac SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"invalid adaptivity purpose"); 46626d9498aSToby Isaac } 46726d9498aSToby Isaac PetscFunctionReturn(0); 46826d9498aSToby Isaac } 46926d9498aSToby Isaac 47026d9498aSToby Isaac #undef __FUNCT__ 47126d9498aSToby Isaac #define __FUNCT__ "DMForestSetAdaptivityPurpose" 4729be51f97SToby Isaac /*@ 4739be51f97SToby Isaac DMForestSetAdaptivityPurpose - During the pre-setup phase, set whether the current DM is being adapted from its 4749be51f97SToby Isaac source (set with DMForestSetAdaptivityForest()) for the purpose of refinement (DM_FOREST_REFINE), coarsening 4759be51f97SToby Isaac (DM_FOREST_COARSEN), or undefined (DM_FOREST_NONE). This only matters for the purposes of reference counting: 4769be51f97SToby Isaac during DMDestroy(), cyclic references can be found between DMs only if the cyclic reference is due to a fine/coarse 4779be51f97SToby Isaac relationship (see DMSetFineDM()/DMSetCoarseDM()). If the purpose is not refinement or coarsening, and the user does 4789be51f97SToby Isaac not maintain a reference to the post-adaptation forest (i.e., the one created by DMForestTemplate()), then this can 4799be51f97SToby Isaac cause a memory leak. This method is used by subtypes of DMForest when automatically constructing mesh hierarchies. 4809be51f97SToby Isaac 4819be51f97SToby Isaac Logically collective on dm 4829be51f97SToby Isaac 4839be51f97SToby Isaac Input Parameters: 4849be51f97SToby Isaac + dm - the forest 4859be51f97SToby Isaac - purpose - the adaptivity purpose (DM_FOREST_NONE/DM_FOREST_REFINE/DM_FOREST_COARSEN) 4869be51f97SToby Isaac 4879be51f97SToby Isaac Level: advanced 4889be51f97SToby Isaac 4899be51f97SToby Isaac .seealso: DMForestTemplate(), DMForestSetAdaptivityForest(), DMForestGetAdaptivityForest() 4909be51f97SToby Isaac @*/ 49126d9498aSToby Isaac PetscErrorCode DMForestSetAdaptivityPurpose(DM dm, DMForestAdaptivityPurpose purpose) 49226d9498aSToby Isaac { 49326d9498aSToby Isaac DM_Forest *forest; 49426d9498aSToby Isaac PetscErrorCode ierr; 49526d9498aSToby Isaac 49626d9498aSToby Isaac PetscFunctionBegin; 49726d9498aSToby Isaac forest = (DM_Forest*) dm->data; 4989be51f97SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the adaptation forest after setup"); 49926d9498aSToby Isaac if (purpose != forest->adaptPurpose) { 50026d9498aSToby Isaac DM adapt; 50126d9498aSToby Isaac 50226d9498aSToby Isaac ierr = DMForestGetAdaptivityForest(dm,&adapt);CHKERRQ(ierr); 50326d9498aSToby Isaac ierr = PetscObjectReference((PetscObject)adapt);CHKERRQ(ierr); 50426d9498aSToby Isaac ierr = DMForestSetAdaptivityForest(dm,NULL);CHKERRQ(ierr); 505f885a11aSToby Isaac 50626d9498aSToby Isaac forest->adaptPurpose = purpose; 507f885a11aSToby Isaac 50826d9498aSToby Isaac ierr = DMForestSetAdaptivityForest(dm,adapt);CHKERRQ(ierr); 50926d9498aSToby Isaac ierr = DMDestroy(&adapt);CHKERRQ(ierr); 51026d9498aSToby Isaac } 511dd8e54a2SToby Isaac PetscFunctionReturn(0); 512dd8e54a2SToby Isaac } 513dd8e54a2SToby Isaac 514dd8e54a2SToby Isaac #undef __FUNCT__ 51556c0450aSToby Isaac #define __FUNCT__ "DMForestGetAdaptivityPurpose" 51656c0450aSToby Isaac /*@ 51756c0450aSToby Isaac DMForestGetAdaptivityPurpose - Get whether the current DM is being adapted from its source (set with 51856c0450aSToby Isaac DMForestSetAdaptivityForest()) for the purpose of refinement (DM_FOREST_REFINE), coarsening (DM_FOREST_COARSEN), or 51956c0450aSToby Isaac undefined (DM_FOREST_NONE). This only matters for the purposes of reference counting: during DMDestroy(), cyclic 52056c0450aSToby Isaac references can be found between DMs only if the cyclic reference is due to a fine/coarse relationship (see 52156c0450aSToby Isaac DMSetFineDM()/DMSetCoarseDM()). If the purpose is not refinement or coarsening, and the user does not maintain a 52256c0450aSToby Isaac reference to the post-adaptation forest (i.e., the one created by DMForestTemplate()), then this can cause a memory 52356c0450aSToby Isaac leak. This method is used by subtypes of DMForest when automatically constructing mesh hierarchies. 52456c0450aSToby Isaac 52556c0450aSToby Isaac Not collective 52656c0450aSToby Isaac 52756c0450aSToby Isaac Input Parameter: 52856c0450aSToby Isaac . dm - the forest 52956c0450aSToby Isaac 53056c0450aSToby Isaac Output Parameter: 53156c0450aSToby Isaac . purpose - the adaptivity purpose (DM_FOREST_NONE/DM_FOREST_REFINE/DM_FOREST_COARSEN) 53256c0450aSToby Isaac 53356c0450aSToby Isaac Level: advanced 53456c0450aSToby Isaac 53556c0450aSToby Isaac .seealso: DMForestTemplate(), DMForestSetAdaptivityForest(), DMForestGetAdaptivityForest() 53656c0450aSToby Isaac @*/ 53756c0450aSToby Isaac PetscErrorCode DMForestGetAdaptivityPurpose(DM dm, DMForestAdaptivityPurpose *purpose) 53856c0450aSToby Isaac { 53956c0450aSToby Isaac DM_Forest *forest; 54056c0450aSToby Isaac 54156c0450aSToby Isaac PetscFunctionBegin; 54256c0450aSToby Isaac forest = (DM_Forest*) dm->data; 54356c0450aSToby Isaac *purpose = forest->adaptPurpose; 54456c0450aSToby Isaac PetscFunctionReturn(0); 54556c0450aSToby Isaac } 54656c0450aSToby Isaac 54756c0450aSToby Isaac #undef __FUNCT__ 548dd8e54a2SToby Isaac #define __FUNCT__ "DMForestSetAdjacencyDimension" 5499be51f97SToby Isaac /*@ 5509be51f97SToby Isaac DMForestSetAdjacencyDimension - During the pre-setup phase, set the dimension of interface points that determine 5519be51f97SToby Isaac cell adjacency (for the purposes of partitioning and overlap). 5529be51f97SToby Isaac 5539be51f97SToby Isaac Logically collective on dm 5549be51f97SToby Isaac 5559be51f97SToby Isaac Input Parameters: 5569be51f97SToby Isaac + dm - the forest 5579be51f97SToby Isaac - adjDim - default 0 (i.e., vertices determine adjacency) 5589be51f97SToby Isaac 5599be51f97SToby Isaac Level: intermediate 5609be51f97SToby Isaac 5619be51f97SToby Isaac .seealso: DMForestGetAdjacencyDimension(), DMForestSetAdjacencyCodimension(), DMForestSetPartitionOverlap() 5629be51f97SToby Isaac @*/ 563dd8e54a2SToby Isaac PetscErrorCode DMForestSetAdjacencyDimension(DM dm, PetscInt adjDim) 564dd8e54a2SToby Isaac { 565dd8e54a2SToby Isaac PetscInt dim; 566dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 567dd8e54a2SToby Isaac PetscErrorCode ierr; 568dd8e54a2SToby Isaac 569dd8e54a2SToby Isaac PetscFunctionBegin; 570dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 571ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the adjacency dimension after setup"); 572dd8e54a2SToby Isaac if (adjDim < 0) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"adjacency dim cannot be < 0: %d", adjDim); 573dd8e54a2SToby Isaac ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 574dd8e54a2SToby Isaac if (adjDim > dim) SETERRQ2(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"adjacency dim cannot be > %d: %d", dim, adjDim); 575dd8e54a2SToby Isaac forest->adjDim = adjDim; 576dd8e54a2SToby Isaac PetscFunctionReturn(0); 577dd8e54a2SToby Isaac } 578dd8e54a2SToby Isaac 579dd8e54a2SToby Isaac #undef __FUNCT__ 580dd8e54a2SToby Isaac #define __FUNCT__ "DMForestSetAdjacencyCodimension" 5819be51f97SToby Isaac /*@ 5829be51f97SToby Isaac DMForestSetAdjacencyCodimension - Like DMForestSetAdjacencyDimension(), but specified as a co-dimension (so that, 5839be51f97SToby Isaac e.g., adjacency based on facets can be specified by codimension 1 in all cases) 5849be51f97SToby Isaac 5859be51f97SToby Isaac Logically collective on dm 5869be51f97SToby Isaac 5879be51f97SToby Isaac Input Parameters: 5889be51f97SToby Isaac + dm - the forest 5899be51f97SToby Isaac - adjCodim - default isthe dimension of the forest (see DMGetDimension()), since this is the codimension of vertices 5909be51f97SToby Isaac 5919be51f97SToby Isaac Level: intermediate 5929be51f97SToby Isaac 5939be51f97SToby Isaac .seealso: DMForestGetAdjacencyCodimension(), DMForestSetAdjacencyDimension() 5949be51f97SToby Isaac @*/ 595dd8e54a2SToby Isaac PetscErrorCode DMForestSetAdjacencyCodimension(DM dm, PetscInt adjCodim) 596dd8e54a2SToby Isaac { 597dd8e54a2SToby Isaac PetscInt dim; 598dd8e54a2SToby Isaac PetscErrorCode ierr; 599dd8e54a2SToby Isaac 600dd8e54a2SToby Isaac PetscFunctionBegin; 601dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 602dd8e54a2SToby Isaac ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 603dd8e54a2SToby Isaac ierr = DMForestSetAdjacencyDimension(dm,dim-adjCodim);CHKERRQ(ierr); 604dd8e54a2SToby Isaac PetscFunctionReturn(0); 605dd8e54a2SToby Isaac } 606dd8e54a2SToby Isaac 607dd8e54a2SToby Isaac #undef __FUNCT__ 608dd8e54a2SToby Isaac #define __FUNCT__ "DMForestGetAdjacencyDimension" 6099be51f97SToby Isaac /*@ 6109be51f97SToby Isaac DMForestGetAdjacencyDimension - Get the dimension of interface points that determine cell adjacency (for the 6119be51f97SToby Isaac purposes of partitioning and overlap). 6129be51f97SToby Isaac 6139be51f97SToby Isaac Not collective 6149be51f97SToby Isaac 6159be51f97SToby Isaac Input Parameter: 6169be51f97SToby Isaac . dm - the forest 6179be51f97SToby Isaac 6189be51f97SToby Isaac Output Parameter: 6199be51f97SToby Isaac . adjDim - default 0 (i.e., vertices determine adjacency) 6209be51f97SToby Isaac 6219be51f97SToby Isaac Level: intermediate 6229be51f97SToby Isaac 6239be51f97SToby Isaac .seealso: DMForestSetAdjacencyDimension(), DMForestGetAdjacencyCodimension(), DMForestSetPartitionOverlap() 6249be51f97SToby Isaac @*/ 625dd8e54a2SToby Isaac PetscErrorCode DMForestGetAdjacencyDimension(DM dm, PetscInt *adjDim) 626dd8e54a2SToby Isaac { 627dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 628dd8e54a2SToby Isaac 629dd8e54a2SToby Isaac PetscFunctionBegin; 630dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 631dd8e54a2SToby Isaac PetscValidIntPointer(adjDim,2); 632dd8e54a2SToby Isaac *adjDim = forest->adjDim; 633dd8e54a2SToby Isaac PetscFunctionReturn(0); 634dd8e54a2SToby Isaac } 635dd8e54a2SToby Isaac 636dd8e54a2SToby Isaac #undef __FUNCT__ 637dd8e54a2SToby Isaac #define __FUNCT__ "DMForestGetAdjacencyCodimension" 6389be51f97SToby Isaac /*@ 6399be51f97SToby Isaac DMForestGetAdjacencyCodimension - Like DMForestGetAdjacencyDimension(), but specified as a co-dimension (so that, 6409be51f97SToby Isaac e.g., adjacency based on facets can be specified by codimension 1 in all cases) 6419be51f97SToby Isaac 6429be51f97SToby Isaac Not collective 6439be51f97SToby Isaac 6449be51f97SToby Isaac Input Parameter: 6459be51f97SToby Isaac . dm - the forest 6469be51f97SToby Isaac 6479be51f97SToby Isaac Output Parameter: 6489be51f97SToby Isaac . adjCodim - default isthe dimension of the forest (see DMGetDimension()), since this is the codimension of vertices 6499be51f97SToby Isaac 6509be51f97SToby Isaac Level: intermediate 6519be51f97SToby Isaac 6529be51f97SToby Isaac .seealso: DMForestSetAdjacencyCodimension(), DMForestGetAdjacencyDimension() 6539be51f97SToby Isaac @*/ 654dd8e54a2SToby Isaac PetscErrorCode DMForestGetAdjacencyCodimension(DM dm, PetscInt *adjCodim) 655dd8e54a2SToby Isaac { 656dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 657dd8e54a2SToby Isaac PetscInt dim; 658dd8e54a2SToby Isaac PetscErrorCode ierr; 659dd8e54a2SToby Isaac 660dd8e54a2SToby Isaac PetscFunctionBegin; 661dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 662dd8e54a2SToby Isaac PetscValidIntPointer(adjCodim,2); 663dd8e54a2SToby Isaac ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 664dd8e54a2SToby Isaac *adjCodim = dim - forest->adjDim; 665dd8e54a2SToby Isaac PetscFunctionReturn(0); 666dd8e54a2SToby Isaac } 667dd8e54a2SToby Isaac 668dd8e54a2SToby Isaac #undef __FUNCT__ 669ef51cf95SToby Isaac #define __FUNCT__ "DMForestSetPartitionOverlap" 6709be51f97SToby Isaac /*@ 6719be51f97SToby Isaac DMForestSetPartitionOverlap - During the pre-setup phase, set the amount of cell-overlap present in parallel 6729be51f97SToby Isaac partitions of a forest, with values > 0 indicating subdomains that are expanded by that many iterations of adding 6739be51f97SToby Isaac adjacent cells 6749be51f97SToby Isaac 6759be51f97SToby Isaac Logically collective on dm 6769be51f97SToby Isaac 6779be51f97SToby Isaac Input Parameters: 6789be51f97SToby Isaac + dm - the forest 6799be51f97SToby Isaac - overlap - default 0 6809be51f97SToby Isaac 6819be51f97SToby Isaac Level: intermediate 6829be51f97SToby Isaac 6839be51f97SToby Isaac .seealso: DMForestGetPartitionOverlap(), DMForestSetAdjacencyDimension(), DMForestSetAdjacencyCodimension() 6849be51f97SToby Isaac @*/ 685dd8e54a2SToby Isaac PetscErrorCode DMForestSetPartitionOverlap(DM dm, PetscInt overlap) 686dd8e54a2SToby Isaac { 687dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 688dd8e54a2SToby Isaac 689dd8e54a2SToby Isaac PetscFunctionBegin; 690dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 691ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the overlap after setup"); 692dd8e54a2SToby Isaac if (overlap < 0) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"overlap cannot be < 0: %d", overlap); 693dd8e54a2SToby Isaac forest->overlap = overlap; 694dd8e54a2SToby Isaac PetscFunctionReturn(0); 695dd8e54a2SToby Isaac } 696dd8e54a2SToby Isaac 697dd8e54a2SToby Isaac #undef __FUNCT__ 698dd8e54a2SToby Isaac #define __FUNCT__ "DMForestGetPartitionOverlap" 6999be51f97SToby Isaac /*@ 7009be51f97SToby Isaac DMForestGetPartitionOverlap - Get the amount of cell-overlap present in parallel partitions of a forest, with values 7019be51f97SToby Isaac > 0 indicating subdomains that are expanded by that many iterations of adding adjacent cells 7029be51f97SToby Isaac 7039be51f97SToby Isaac Not collective 7049be51f97SToby Isaac 7059be51f97SToby Isaac Input Parameter: 7069be51f97SToby Isaac . dm - the forest 7079be51f97SToby Isaac 7089be51f97SToby Isaac Output Parameter: 7099be51f97SToby Isaac . overlap - default 0 7109be51f97SToby Isaac 7119be51f97SToby Isaac Level: intermediate 7129be51f97SToby Isaac 7139be51f97SToby Isaac .seealso: DMForestGetPartitionOverlap(), DMForestSetAdjacencyDimension(), DMForestSetAdjacencyCodimension() 7149be51f97SToby Isaac @*/ 715dd8e54a2SToby Isaac PetscErrorCode DMForestGetPartitionOverlap(DM dm, PetscInt *overlap) 716dd8e54a2SToby Isaac { 717dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 718dd8e54a2SToby Isaac 719dd8e54a2SToby Isaac PetscFunctionBegin; 720dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 721dd8e54a2SToby Isaac PetscValidIntPointer(overlap,2); 722dd8e54a2SToby Isaac *overlap = forest->overlap; 723dd8e54a2SToby Isaac PetscFunctionReturn(0); 724dd8e54a2SToby Isaac } 725dd8e54a2SToby Isaac 726dd8e54a2SToby Isaac #undef __FUNCT__ 727dd8e54a2SToby Isaac #define __FUNCT__ "DMForestSetMinimumRefinement" 7289be51f97SToby Isaac /*@ 7299be51f97SToby Isaac DMForestSetMinimumRefinement - During the pre-setup phase, set the minimum level of refinement (relative to the base 7309be51f97SToby Isaac DM, see DMForestGetBaseDM()) allowed in the forest. If the forest is being created by coarsening a previous forest 7319be51f97SToby Isaac (see DMForestGetAdaptivityForest()) this limits the amount of coarsening. 7329be51f97SToby Isaac 7339be51f97SToby Isaac Logically collective on dm 7349be51f97SToby Isaac 7359be51f97SToby Isaac Input Parameters: 7369be51f97SToby Isaac + dm - the forest 7379be51f97SToby Isaac - minRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 7389be51f97SToby Isaac 7399be51f97SToby Isaac Level: intermediate 7409be51f97SToby Isaac 7419be51f97SToby Isaac .seealso: DMForestGetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestSetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityForest() 7429be51f97SToby Isaac @*/ 743dd8e54a2SToby Isaac PetscErrorCode DMForestSetMinimumRefinement(DM dm, PetscInt minRefinement) 744dd8e54a2SToby Isaac { 745dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 746dd8e54a2SToby Isaac 747dd8e54a2SToby Isaac PetscFunctionBegin; 748dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 749ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the minimum refinement after setup"); 750dd8e54a2SToby Isaac forest->minRefinement = minRefinement; 751dd8e54a2SToby Isaac PetscFunctionReturn(0); 752dd8e54a2SToby Isaac } 753dd8e54a2SToby Isaac 754dd8e54a2SToby Isaac #undef __FUNCT__ 755dd8e54a2SToby Isaac #define __FUNCT__ "DMForestGetMinimumRefinement" 7569be51f97SToby Isaac /*@ 7579be51f97SToby Isaac DMForestGetMinimumRefinement - Get the minimum level of refinement (relative to the base DM, see 7589be51f97SToby Isaac DMForestGetBaseDM()) allowed in the forest. If the forest is being created by coarsening a previous forest (see 7599be51f97SToby Isaac DMForestGetAdaptivityForest()), this limits the amount of coarsening. 7609be51f97SToby Isaac 7619be51f97SToby Isaac Not collective 7629be51f97SToby Isaac 7639be51f97SToby Isaac Input Parameter: 7649be51f97SToby Isaac . dm - the forest 7659be51f97SToby Isaac 7669be51f97SToby Isaac Output Parameter: 7679be51f97SToby Isaac . minRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 7689be51f97SToby Isaac 7699be51f97SToby Isaac Level: intermediate 7709be51f97SToby Isaac 7719be51f97SToby Isaac .seealso: DMForestSetMinimumRefinement(), DMForestGetMaximumRefinement(), DMForestGetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityForest() 7729be51f97SToby Isaac @*/ 773dd8e54a2SToby Isaac PetscErrorCode DMForestGetMinimumRefinement(DM dm, PetscInt *minRefinement) 774dd8e54a2SToby Isaac { 775dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 776dd8e54a2SToby Isaac 777dd8e54a2SToby Isaac PetscFunctionBegin; 778dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 779dd8e54a2SToby Isaac PetscValidIntPointer(minRefinement,2); 780dd8e54a2SToby Isaac *minRefinement = forest->minRefinement; 781dd8e54a2SToby Isaac PetscFunctionReturn(0); 782dd8e54a2SToby Isaac } 783dd8e54a2SToby Isaac 784dd8e54a2SToby Isaac #undef __FUNCT__ 78556ba9f64SToby Isaac #define __FUNCT__ "DMForestSetInitialRefinement" 7869be51f97SToby Isaac /*@ 7879be51f97SToby Isaac DMForestSetInitialRefinement - During the pre-setup phase, set the initial level of refinement (relative to the base 7889be51f97SToby Isaac DM, see DMForestGetBaseDM()) allowed in the forest. 7899be51f97SToby Isaac 7909be51f97SToby Isaac Logically collective on dm 7919be51f97SToby Isaac 7929be51f97SToby Isaac Input Parameters: 7939be51f97SToby Isaac + dm - the forest 7949be51f97SToby Isaac - initefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 7959be51f97SToby Isaac 7969be51f97SToby Isaac Level: intermediate 7979be51f97SToby Isaac 7989be51f97SToby Isaac .seealso: DMForestSetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestGetBaseDM() 7999be51f97SToby Isaac @*/ 80056ba9f64SToby Isaac PetscErrorCode DMForestSetInitialRefinement(DM dm, PetscInt initRefinement) 80156ba9f64SToby Isaac { 80256ba9f64SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 80356ba9f64SToby Isaac 80456ba9f64SToby Isaac PetscFunctionBegin; 80556ba9f64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80656ba9f64SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the initial refinement after setup"); 80756ba9f64SToby Isaac forest->initRefinement = initRefinement; 80856ba9f64SToby Isaac PetscFunctionReturn(0); 80956ba9f64SToby Isaac } 81056ba9f64SToby Isaac 81156ba9f64SToby Isaac #undef __FUNCT__ 81256ba9f64SToby Isaac #define __FUNCT__ "DMForestGetInitialRefinement" 8139be51f97SToby Isaac /*@ 8149be51f97SToby Isaac DMForestGetInitialRefinement - Get the initial level of refinement (relative to the base DM, see 8159be51f97SToby Isaac DMForestGetBaseDM()) allowed in the forest. 8169be51f97SToby Isaac 8179be51f97SToby Isaac Not collective 8189be51f97SToby Isaac 8199be51f97SToby Isaac Input Parameter: 8209be51f97SToby Isaac . dm - the forest 8219be51f97SToby Isaac 8229be51f97SToby Isaac Output Paramater: 8239be51f97SToby Isaac . initefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 8249be51f97SToby Isaac 8259be51f97SToby Isaac Level: intermediate 8269be51f97SToby Isaac 8279be51f97SToby Isaac .seealso: DMForestSetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestGetBaseDM() 8289be51f97SToby Isaac @*/ 82956ba9f64SToby Isaac PetscErrorCode DMForestGetInitialRefinement(DM dm, PetscInt *initRefinement) 83056ba9f64SToby Isaac { 83156ba9f64SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 83256ba9f64SToby Isaac 83356ba9f64SToby Isaac PetscFunctionBegin; 83456ba9f64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 83556ba9f64SToby Isaac PetscValidIntPointer(initRefinement,2); 83656ba9f64SToby Isaac *initRefinement = forest->initRefinement; 83756ba9f64SToby Isaac PetscFunctionReturn(0); 83856ba9f64SToby Isaac } 83956ba9f64SToby Isaac 84056ba9f64SToby Isaac #undef __FUNCT__ 841c7eeac06SToby Isaac #define __FUNCT__ "DMForestSetMaximumRefinement" 8429be51f97SToby Isaac /*@ 8439be51f97SToby Isaac DMForestSetMaximumRefinement - During the pre-setup phase, set the maximum level of refinement (relative to the base 8449be51f97SToby Isaac DM, see DMForestGetBaseDM()) allowed in the forest. If the forest is being created by refining a previous forest 8459be51f97SToby Isaac (see DMForestGetAdaptivityForest()), this limits the amount of refinement. 8469be51f97SToby Isaac 8479be51f97SToby Isaac Logically collective on dm 8489be51f97SToby Isaac 8499be51f97SToby Isaac Input Parameters: 8509be51f97SToby Isaac + dm - the forest 8519be51f97SToby Isaac - maxRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 8529be51f97SToby Isaac 8539be51f97SToby Isaac Level: intermediate 8549be51f97SToby Isaac 8559be51f97SToby Isaac .seealso: DMForestGetMinimumRefinement(), DMForestSetMaximumRefinement(), DMForestSetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityDM() 8569be51f97SToby Isaac @*/ 857c7eeac06SToby Isaac PetscErrorCode DMForestSetMaximumRefinement(DM dm, PetscInt maxRefinement) 858dd8e54a2SToby Isaac { 859dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 860dd8e54a2SToby Isaac 861dd8e54a2SToby Isaac PetscFunctionBegin; 862dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 863ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the maximum refinement after setup"); 864c7eeac06SToby Isaac forest->maxRefinement = maxRefinement; 865dd8e54a2SToby Isaac PetscFunctionReturn(0); 866dd8e54a2SToby Isaac } 867dd8e54a2SToby Isaac 868dd8e54a2SToby Isaac #undef __FUNCT__ 869c7eeac06SToby Isaac #define __FUNCT__ "DMForestGetMaximumRefinement" 8709be51f97SToby Isaac /*@ 8719be51f97SToby Isaac DMForestGetMaximumRefinement - Get the maximum level of refinement (relative to the base DM, see 8729be51f97SToby Isaac DMForestGetBaseDM()) allowed in the forest. If the forest is being created by refining a previous forest (see 8739be51f97SToby Isaac DMForestGetAdaptivityForest()), this limits the amount of refinement. 8749be51f97SToby Isaac 8759be51f97SToby Isaac Not collective 8769be51f97SToby Isaac 8779be51f97SToby Isaac Input Parameter: 8789be51f97SToby Isaac . dm - the forest 8799be51f97SToby Isaac 8809be51f97SToby Isaac Output Parameter: 8819be51f97SToby Isaac . maxRefinement - default PETSC_DEFAULT (interpreted by the subtype of DMForest) 8829be51f97SToby Isaac 8839be51f97SToby Isaac Level: intermediate 8849be51f97SToby Isaac 8859be51f97SToby Isaac .seealso: DMForestSetMaximumRefinement(), DMForestGetMinimumRefinement(), DMForestGetInitialRefinement(), DMForestGetBaseDM(), DMForestGetAdaptivityForest() 8869be51f97SToby Isaac @*/ 887c7eeac06SToby Isaac PetscErrorCode DMForestGetMaximumRefinement(DM dm, PetscInt *maxRefinement) 888dd8e54a2SToby Isaac { 889dd8e54a2SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 890dd8e54a2SToby Isaac 891dd8e54a2SToby Isaac PetscFunctionBegin; 892dd8e54a2SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 893c7eeac06SToby Isaac PetscValidIntPointer(maxRefinement,2); 894c7eeac06SToby Isaac *maxRefinement = forest->maxRefinement; 895dd8e54a2SToby Isaac PetscFunctionReturn(0); 896dd8e54a2SToby Isaac } 897c7eeac06SToby Isaac 898c7eeac06SToby Isaac #undef __FUNCT__ 899c7eeac06SToby Isaac #define __FUNCT__ "DMForestSetAdaptivityStrategy" 9009be51f97SToby Isaac /*@C 9019be51f97SToby Isaac DMForestSetAdaptivityStrategy - During the pre-setup phase, set the strategy for combining adaptivity labels from multiple processes. 9029be51f97SToby Isaac Subtypes of DMForest may define their own strategies. Two default strategies are DMFORESTADAPTALL, which indicates that all processes must agree 9039be51f97SToby Isaac for a refinement/coarsening flag to be valid, and DMFORESTADAPTANY, which indicates that only one process needs to 9049be51f97SToby Isaac specify refinement/coarsening. 9059be51f97SToby Isaac 9069be51f97SToby Isaac Logically collective on dm 9079be51f97SToby Isaac 9089be51f97SToby Isaac Input Parameters: 9099be51f97SToby Isaac + dm - the forest 9109be51f97SToby Isaac - adaptStrategy - default DMFORESTADAPTALL 9119be51f97SToby Isaac 9129be51f97SToby Isaac Level: advanced 9139be51f97SToby Isaac 9149be51f97SToby Isaac .seealso: DMForestGetAdaptivityStrategy() 9159be51f97SToby Isaac @*/ 916c7eeac06SToby Isaac PetscErrorCode DMForestSetAdaptivityStrategy(DM dm, DMForestAdaptivityStrategy adaptStrategy) 917c7eeac06SToby Isaac { 918c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 919c7eeac06SToby Isaac PetscErrorCode ierr; 920c7eeac06SToby Isaac 921c7eeac06SToby Isaac PetscFunctionBegin; 922c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 923c7eeac06SToby Isaac ierr = PetscFree(forest->adaptStrategy);CHKERRQ(ierr); 924a73e2921SToby Isaac ierr = PetscStrallocpy((const char*) adaptStrategy,(char**)&forest->adaptStrategy);CHKERRQ(ierr); 925c7eeac06SToby Isaac PetscFunctionReturn(0); 926c7eeac06SToby Isaac } 927c7eeac06SToby Isaac 928c7eeac06SToby Isaac #undef __FUNCT__ 929c7eeac06SToby Isaac #define __FUNCT__ "DMForestGetAdaptivityStrategy" 9309be51f97SToby Isaac /*@C 9319be51f97SToby Isaac DMForestSetAdaptivityStrategy - Get the strategy for combining adaptivity labels from multiple processes. Subtypes 9329be51f97SToby Isaac of DMForest may define their own strategies. Two default strategies are DMFORESTADAPTALL, which indicates that all 9339be51f97SToby Isaac processes must agree for a refinement/coarsening flag to be valid, and DMFORESTADAPTANY, which indicates that only 9349be51f97SToby Isaac one process needs to specify refinement/coarsening. 9359be51f97SToby Isaac 9369be51f97SToby Isaac Not collective 9379be51f97SToby Isaac 9389be51f97SToby Isaac Input Parameter: 9399be51f97SToby Isaac . dm - the forest 9409be51f97SToby Isaac 9419be51f97SToby Isaac Output Parameter: 9429be51f97SToby Isaac . adaptStrategy - the adaptivity strategy (default DMFORESTADAPTALL) 9439be51f97SToby Isaac 9449be51f97SToby Isaac Level: advanced 9459be51f97SToby Isaac 9469be51f97SToby Isaac .seealso: DMForestSetAdaptivityStrategy() 9479be51f97SToby Isaac @*/ 948c7eeac06SToby Isaac PetscErrorCode DMForestGetAdaptivityStrategy(DM dm, DMForestAdaptivityStrategy *adaptStrategy) 949c7eeac06SToby Isaac { 950c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 951c7eeac06SToby Isaac 952c7eeac06SToby Isaac PetscFunctionBegin; 953c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 954c7eeac06SToby Isaac PetscValidPointer(adaptStrategy,2); 955c7eeac06SToby Isaac *adaptStrategy = forest->adaptStrategy; 956c7eeac06SToby Isaac PetscFunctionReturn(0); 957c7eeac06SToby Isaac } 958c7eeac06SToby Isaac 959c7eeac06SToby Isaac #undef __FUNCT__ 960bf9b5d84SToby Isaac #define __FUNCT__ "DMForestSetComputeAdaptivitySF" 961bf9b5d84SToby Isaac /*@ 962bf9b5d84SToby Isaac DMForestSetComputeAdaptivitySF - During the pre-setup phase, set whether transfer PetscSFs should be computed 963bf9b5d84SToby Isaac relating the cells of the pre-adaptation forest to the post-adaptiation forest. After DMSetUp() is called, these transfer PetscSFs can be accessed with DMForestGetAdaptivitySF(). 964bf9b5d84SToby Isaac 965bf9b5d84SToby Isaac Logically collective on dm 966bf9b5d84SToby Isaac 967bf9b5d84SToby Isaac Input Parameters: 968bf9b5d84SToby Isaac + dm - the post-adaptation forest 969bf9b5d84SToby Isaac - computeSF - default PETSC_TRUE 970bf9b5d84SToby Isaac 971bf9b5d84SToby Isaac Level: advanced 972bf9b5d84SToby Isaac 973bf9b5d84SToby Isaac .seealso: DMForestGetComputeAdaptivitySF(), DMForestGetAdaptivitySF() 974bf9b5d84SToby Isaac @*/ 975bf9b5d84SToby Isaac PetscErrorCode DMForestSetComputeAdaptivitySF(DM dm, PetscBool computeSF) 976bf9b5d84SToby Isaac { 977bf9b5d84SToby Isaac DM_Forest *forest; 978bf9b5d84SToby Isaac 979bf9b5d84SToby Isaac PetscFunctionBegin; 980bf9b5d84SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 981bf9b5d84SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot compute adaptivity PetscSFs after setup is called"); 982bf9b5d84SToby Isaac forest = (DM_Forest*) dm->data; 983bf9b5d84SToby Isaac forest->computeAdaptSF = computeSF; 984bf9b5d84SToby Isaac PetscFunctionReturn(0); 985bf9b5d84SToby Isaac } 986bf9b5d84SToby Isaac 987bf9b5d84SToby Isaac #undef __FUNCT__ 988*80b27e07SToby Isaac #define __FUNCT__ "DMForestTransferVec" 989*80b27e07SToby Isaac PetscErrorCode DMForestTransferVec(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut) 990*80b27e07SToby Isaac { 991*80b27e07SToby Isaac DM_Forest *forest; 992*80b27e07SToby Isaac PetscErrorCode ierr; 993*80b27e07SToby Isaac 994*80b27e07SToby Isaac PetscFunctionBegin; 995*80b27e07SToby Isaac PetscValidHeaderSpecific(dmIn ,DM_CLASSID ,1); 996*80b27e07SToby Isaac PetscValidHeaderSpecific(vecIn ,VEC_CLASSID ,2); 997*80b27e07SToby Isaac PetscValidHeaderSpecific(dmOut ,DM_CLASSID ,3); 998*80b27e07SToby Isaac PetscValidHeaderSpecific(vecOut ,VEC_CLASSID ,4); 999*80b27e07SToby Isaac forest = (DM_Forest *) dmIn->data; 1000*80b27e07SToby Isaac if (!forest->transfervec) SETERRQ(PetscObjectComm((PetscObject)dmIn),PETSC_ERR_SUP,"DMForestTransferVec() not implemented"); 1001*80b27e07SToby Isaac ierr = (forest->transfervec)(dmIn,vecIn,dmOut,vecOut);CHKERRQ(ierr); 1002*80b27e07SToby Isaac PetscFunctionReturn(0); 1003*80b27e07SToby Isaac } 1004*80b27e07SToby Isaac 1005*80b27e07SToby Isaac #undef __FUNCT__ 1006bf9b5d84SToby Isaac #define __FUNCT__ "DMForestGetComputeAdaptivitySF" 1007bf9b5d84SToby Isaac /*@ 1008bf9b5d84SToby Isaac DMForestGetComputeAdaptivitySF - Get whether transfer PetscSFs should be computed relating the cells of the 1009bf9b5d84SToby Isaac pre-adaptation forest to the post-adaptiation forest. After DMSetUp() is called, these transfer PetscSFs can be 1010bf9b5d84SToby Isaac accessed with DMForestGetAdaptivitySF(). 1011bf9b5d84SToby Isaac 1012bf9b5d84SToby Isaac Not collective 1013bf9b5d84SToby Isaac 1014bf9b5d84SToby Isaac Input Parameter: 1015bf9b5d84SToby Isaac . dm - the post-adaptation forest 1016bf9b5d84SToby Isaac 1017bf9b5d84SToby Isaac Output Parameter: 1018bf9b5d84SToby Isaac . computeSF - default PETSC_TRUE 1019bf9b5d84SToby Isaac 1020bf9b5d84SToby Isaac Level: advanced 1021bf9b5d84SToby Isaac 1022bf9b5d84SToby Isaac .seealso: DMForestSetComputeAdaptivitySF(), DMForestGetAdaptivitySF() 1023bf9b5d84SToby Isaac @*/ 1024bf9b5d84SToby Isaac PetscErrorCode DMForestGetComputeAdaptivitySF(DM dm, PetscBool *computeSF) 1025bf9b5d84SToby Isaac { 1026bf9b5d84SToby Isaac DM_Forest *forest; 1027bf9b5d84SToby Isaac 1028bf9b5d84SToby Isaac PetscFunctionBegin; 1029bf9b5d84SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1030bf9b5d84SToby Isaac forest = (DM_Forest*) dm->data; 1031bf9b5d84SToby Isaac *computeSF = forest->computeAdaptSF; 1032bf9b5d84SToby Isaac PetscFunctionReturn(0); 1033bf9b5d84SToby Isaac } 1034bf9b5d84SToby Isaac 1035bf9b5d84SToby Isaac #undef __FUNCT__ 1036bf9b5d84SToby Isaac #define __FUNCT__ "DMForestGetAdaptivitySF" 1037bf9b5d84SToby Isaac /*@ 1038bf9b5d84SToby Isaac DMForestGetAdaptivitySF - Get PetscSFs that relate the pre-adaptation forest to the post-adaptation forest. 1039bf9b5d84SToby Isaac Adaptation can be any combination of refinement, coarsening, repartition, and change of overlap, so there may be 1040bf9b5d84SToby Isaac some cells of the pre-adaptation that are parents of post-adaptation cells, and vice versa. Therefore there are two 1041bf9b5d84SToby Isaac PetscSFs: one that relates pre-adaptation coarse cells to post-adaptation fine cells, and one that relates 1042bf9b5d84SToby Isaac pre-adaptation fine cells to post-adaptation coarse cells. 1043bf9b5d84SToby Isaac 1044bf9b5d84SToby Isaac Not collective 1045bf9b5d84SToby Isaac 1046bf9b5d84SToby Isaac Input Parameter: 1047bf9b5d84SToby Isaac dm - the post-adaptation forest 1048bf9b5d84SToby Isaac 1049bf9b5d84SToby Isaac Output Parameter: 10500f17b9e3SToby Isaac preCoarseToFine - pre-adaptation coarse cells to post-adaptation fine cells: BCast goes from pre- to post- 10510f17b9e3SToby Isaac coarseToPreFine - post-adaptation coarse cells to pre-adaptation fine cells: BCast goes from post- to pre- 1052bf9b5d84SToby Isaac 1053bf9b5d84SToby Isaac Level: advanced 1054bf9b5d84SToby Isaac 1055bf9b5d84SToby Isaac .seealso: DMForestGetComputeAdaptivitySF(), DMForestSetComputeAdaptivitySF() 1056bf9b5d84SToby Isaac @*/ 10570f17b9e3SToby Isaac PetscErrorCode DMForestGetAdaptivitySF(DM dm, PetscSF *preCoarseToFine, PetscSF *coarseToPreFine) 1058bf9b5d84SToby Isaac { 1059bf9b5d84SToby Isaac DM_Forest *forest; 1060bf9b5d84SToby Isaac PetscErrorCode ierr; 1061bf9b5d84SToby Isaac 1062bf9b5d84SToby Isaac PetscFunctionBegin; 1063bf9b5d84SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1064bf9b5d84SToby Isaac ierr = DMSetUp(dm);CHKERRQ(ierr); 1065bf9b5d84SToby Isaac forest = (DM_Forest*) dm->data; 1066f885a11aSToby Isaac if (preCoarseToFine) *preCoarseToFine = forest->preCoarseToFine; 1067f885a11aSToby Isaac if (coarseToPreFine) *coarseToPreFine = forest->coarseToPreFine; 1068bf9b5d84SToby Isaac PetscFunctionReturn(0); 1069bf9b5d84SToby Isaac } 1070bf9b5d84SToby Isaac 1071bf9b5d84SToby Isaac #undef __FUNCT__ 1072c7eeac06SToby Isaac #define __FUNCT__ "DMForestSetGradeFactor" 10739be51f97SToby Isaac /*@ 10749be51f97SToby Isaac DMForestSetGradeFactor - During the pre-setup phase, set the desired amount of grading in the mesh, e.g. give 2 to 10759be51f97SToby Isaac indicate that the diameter of neighboring cells should differ by at most a factor of 2. Subtypes of DMForest may 10769be51f97SToby Isaac only support one particular choice of grading factor. 10779be51f97SToby Isaac 10789be51f97SToby Isaac Logically collective on dm 10799be51f97SToby Isaac 10809be51f97SToby Isaac Input Parameters: 10819be51f97SToby Isaac + dm - the forest 10829be51f97SToby Isaac - grade - the grading factor 10839be51f97SToby Isaac 10849be51f97SToby Isaac Level: advanced 10859be51f97SToby Isaac 10869be51f97SToby Isaac .seealso: DMForestGetGradeFactor() 10879be51f97SToby Isaac @*/ 1088c7eeac06SToby Isaac PetscErrorCode DMForestSetGradeFactor(DM dm, PetscInt grade) 1089c7eeac06SToby Isaac { 1090c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1091c7eeac06SToby Isaac 1092c7eeac06SToby Isaac PetscFunctionBegin; 1093c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1094ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the grade factor after setup"); 1095c7eeac06SToby Isaac forest->gradeFactor = grade; 1096c7eeac06SToby Isaac PetscFunctionReturn(0); 1097c7eeac06SToby Isaac } 1098c7eeac06SToby Isaac 1099c7eeac06SToby Isaac #undef __FUNCT__ 1100c7eeac06SToby Isaac #define __FUNCT__ "DMForestGetGradeFactor" 11019be51f97SToby Isaac /*@ 11029be51f97SToby Isaac DMForestGetGradeFactor - Get the desired amount of grading in the mesh, e.g. give 2 to indicate that the diameter of 11039be51f97SToby Isaac neighboring cells should differ by at most a factor of 2. Subtypes of DMForest may only support one particular 11049be51f97SToby Isaac choice of grading factor. 11059be51f97SToby Isaac 11069be51f97SToby Isaac Not collective 11079be51f97SToby Isaac 11089be51f97SToby Isaac Input Parameter: 11099be51f97SToby Isaac . dm - the forest 11109be51f97SToby Isaac 11119be51f97SToby Isaac Output Parameter: 11129be51f97SToby Isaac . grade - the grading factor 11139be51f97SToby Isaac 11149be51f97SToby Isaac Level: advanced 11159be51f97SToby Isaac 11169be51f97SToby Isaac .seealso: DMForestSetGradeFactor() 11179be51f97SToby Isaac @*/ 1118c7eeac06SToby Isaac PetscErrorCode DMForestGetGradeFactor(DM dm, PetscInt *grade) 1119c7eeac06SToby Isaac { 1120c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1121c7eeac06SToby Isaac 1122c7eeac06SToby Isaac PetscFunctionBegin; 1123c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1124c7eeac06SToby Isaac PetscValidIntPointer(grade,2); 1125c7eeac06SToby Isaac *grade = forest->gradeFactor; 1126c7eeac06SToby Isaac PetscFunctionReturn(0); 1127c7eeac06SToby Isaac } 1128c7eeac06SToby Isaac 1129c7eeac06SToby Isaac #undef __FUNCT__ 1130ef51cf95SToby Isaac #define __FUNCT__ "DMForestSetCellWeightFactor" 11319be51f97SToby Isaac /*@ 11329be51f97SToby Isaac DMForestSetCellWeightFactor - During the pre-setup phase, set the factor by which the level of refinement changes 11339be51f97SToby Isaac the cell weight (see DMForestSetCellWeights()) when calculating partitions. The final weight of a cell will be 11349be51f97SToby Isaac (cellWeight) * (weightFactor^refinementLevel). A factor of 1 indicates that the weight of a cell does not depend on 11359be51f97SToby Isaac its level; a factor of 2, for example, might be appropriate for sub-cycling time-stepping methods, when the 11369be51f97SToby Isaac computation associated with a cell is multiplied by a factor of 2 for each additional level of refinement. 11379be51f97SToby Isaac 11389be51f97SToby Isaac Logically collective on dm 11399be51f97SToby Isaac 11409be51f97SToby Isaac Input Parameters: 11419be51f97SToby Isaac + dm - the forest 11429be51f97SToby Isaac - weightsFactors - default 1. 11439be51f97SToby Isaac 11449be51f97SToby Isaac Level: advanced 11459be51f97SToby Isaac 11469be51f97SToby Isaac .seealso: DMForestGetCellWeightFactor(), DMForestSetCellWeights() 11479be51f97SToby Isaac @*/ 1148ef51cf95SToby Isaac PetscErrorCode DMForestSetCellWeightFactor(DM dm, PetscReal weightsFactor) 1149c7eeac06SToby Isaac { 1150c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1151c7eeac06SToby Isaac 1152c7eeac06SToby Isaac PetscFunctionBegin; 1153c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1154ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the weights factor after setup"); 1155c7eeac06SToby Isaac forest->weightsFactor = weightsFactor; 1156c7eeac06SToby Isaac PetscFunctionReturn(0); 1157c7eeac06SToby Isaac } 1158c7eeac06SToby Isaac 1159c7eeac06SToby Isaac #undef __FUNCT__ 1160ef51cf95SToby Isaac #define __FUNCT__ "DMForestGetCellWeightFactor" 11619be51f97SToby Isaac /*@ 11629be51f97SToby Isaac DMForestGetCellWeightFactor - Get the factor by which the level of refinement changes the cell weight (see 11639be51f97SToby Isaac DMForestSetCellWeights()) when calculating partitions. The final weight of a cell will be (cellWeight) * 11649be51f97SToby Isaac (weightFactor^refinementLevel). A factor of 1 indicates that the weight of a cell does not depend on its level; a 11659be51f97SToby Isaac factor of 2, for example, might be appropriate for sub-cycling time-stepping methods, when the computation 11669be51f97SToby Isaac associated with a cell is multiplied by a factor of 2 for each additional level of refinement. 11679be51f97SToby Isaac 11689be51f97SToby Isaac Not collective 11699be51f97SToby Isaac 11709be51f97SToby Isaac Input Parameter: 11719be51f97SToby Isaac . dm - the forest 11729be51f97SToby Isaac 11739be51f97SToby Isaac Output Parameter: 11749be51f97SToby Isaac . weightsFactors - default 1. 11759be51f97SToby Isaac 11769be51f97SToby Isaac Level: advanced 11779be51f97SToby Isaac 11789be51f97SToby Isaac .seealso: DMForestSetCellWeightFactor(), DMForestSetCellWeights() 11799be51f97SToby Isaac @*/ 1180ef51cf95SToby Isaac PetscErrorCode DMForestGetCellWeightFactor(DM dm, PetscReal *weightsFactor) 1181c7eeac06SToby Isaac { 1182c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1183c7eeac06SToby Isaac 1184c7eeac06SToby Isaac PetscFunctionBegin; 1185c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1186c7eeac06SToby Isaac PetscValidRealPointer(weightsFactor,2); 1187c7eeac06SToby Isaac *weightsFactor = forest->weightsFactor; 1188c7eeac06SToby Isaac PetscFunctionReturn(0); 1189c7eeac06SToby Isaac } 1190c7eeac06SToby Isaac 1191c7eeac06SToby Isaac #undef __FUNCT__ 1192c7eeac06SToby Isaac #define __FUNCT__ "DMForestGetCellChart" 11939be51f97SToby Isaac /*@ 11949be51f97SToby Isaac DMForestGetCellChart - After the setup phase, get the local half-open interval of the chart of cells on this process 11959be51f97SToby Isaac 11969be51f97SToby Isaac Not collective 11979be51f97SToby Isaac 11989be51f97SToby Isaac Input Parameter: 11999be51f97SToby Isaac . dm - the forest 12009be51f97SToby Isaac 12019be51f97SToby Isaac Output Parameters: 12029be51f97SToby Isaac + cStart - the first cell on this process 12039be51f97SToby Isaac - cEnd - one after the final cell on this process 12049be51f97SToby Isaac 12051a244344SSatish Balay Level: intermediate 12069be51f97SToby Isaac 12079be51f97SToby Isaac .seealso: DMForestGetCellSF() 12089be51f97SToby Isaac @*/ 1209c7eeac06SToby Isaac PetscErrorCode DMForestGetCellChart(DM dm, PetscInt *cStart, PetscInt *cEnd) 1210c7eeac06SToby Isaac { 1211c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1212c7eeac06SToby Isaac PetscErrorCode ierr; 1213c7eeac06SToby Isaac 1214c7eeac06SToby Isaac PetscFunctionBegin; 1215c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1216c7eeac06SToby Isaac PetscValidIntPointer(cStart,2); 1217c7eeac06SToby Isaac PetscValidIntPointer(cEnd,2); 1218c7eeac06SToby Isaac if (((forest->cStart == PETSC_DETERMINE) || (forest->cEnd == PETSC_DETERMINE)) && forest->createcellchart) { 1219c7eeac06SToby Isaac ierr = forest->createcellchart(dm,&forest->cStart,&forest->cEnd);CHKERRQ(ierr); 1220c7eeac06SToby Isaac } 1221c7eeac06SToby Isaac *cStart = forest->cStart; 1222c7eeac06SToby Isaac *cEnd = forest->cEnd; 1223c7eeac06SToby Isaac PetscFunctionReturn(0); 1224c7eeac06SToby Isaac } 1225c7eeac06SToby Isaac 1226c7eeac06SToby Isaac #undef __FUNCT__ 1227c7eeac06SToby Isaac #define __FUNCT__ "DMForestGetCellSF" 12289be51f97SToby Isaac /*@ 12299be51f97SToby Isaac DMForestGetCellSF - After the setup phase, get the PetscSF for overlapping cells between processes 12309be51f97SToby Isaac 12319be51f97SToby Isaac Not collective 12329be51f97SToby Isaac 12339be51f97SToby Isaac Input Parameter: 12349be51f97SToby Isaac . dm - the forest 12359be51f97SToby Isaac 12369be51f97SToby Isaac Output Parameter: 12379be51f97SToby Isaac . cellSF - the PetscSF 12389be51f97SToby Isaac 12391a244344SSatish Balay Level: intermediate 12409be51f97SToby Isaac 12419be51f97SToby Isaac .seealso: DMForestGetCellChart() 12429be51f97SToby Isaac @*/ 1243c7eeac06SToby Isaac PetscErrorCode DMForestGetCellSF(DM dm, PetscSF *cellSF) 1244c7eeac06SToby Isaac { 1245c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1246c7eeac06SToby Isaac PetscErrorCode ierr; 1247c7eeac06SToby Isaac 1248c7eeac06SToby Isaac PetscFunctionBegin; 1249c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1250c7eeac06SToby Isaac PetscValidPointer(cellSF,2); 1251c7eeac06SToby Isaac if ((!forest->cellSF) && forest->createcellsf) { 1252c7eeac06SToby Isaac ierr = forest->createcellsf(dm,&forest->cellSF);CHKERRQ(ierr); 1253c7eeac06SToby Isaac } 1254c7eeac06SToby Isaac *cellSF = forest->cellSF; 1255c7eeac06SToby Isaac PetscFunctionReturn(0); 1256c7eeac06SToby Isaac } 1257c7eeac06SToby Isaac 1258c7eeac06SToby Isaac #undef __FUNCT__ 1259ebdf65a2SToby Isaac #define __FUNCT__ "DMForestSetAdaptivityLabel" 12609be51f97SToby Isaac /*@C 12619be51f97SToby Isaac DMForestSetAdaptivityLabel - During the pre-setup phase, set the label of the pre-adaptation forest (see 12629be51f97SToby Isaac DMForestGetAdaptivityForest()) that holds the adaptation flags (refinement, coarsening, or some combination). The 12639be51f97SToby Isaac interpretation of the label values is up to the subtype of DMForest, but DM_FOREST_KEEP, DM_FOREST_REFINE, and 12649be51f97SToby Isaac DM_FOREST_COARSEN have been reserved as choices that should be accepted by all subtypes. 12659be51f97SToby Isaac 12669be51f97SToby Isaac Logically collective on dm 12679be51f97SToby Isaac 12689be51f97SToby Isaac Input Parameters: 12699be51f97SToby Isaac - dm - the forest 12709be51f97SToby Isaac + adaptLabel - the name of the label in the pre-adaptation forest 12719be51f97SToby Isaac 12729be51f97SToby Isaac Level: intermediate 12739be51f97SToby Isaac 12749be51f97SToby Isaac .seealso DMForestGetAdaptivityLabel() 12759be51f97SToby Isaac @*/ 1276ebdf65a2SToby Isaac PetscErrorCode DMForestSetAdaptivityLabel(DM dm, const char * adaptLabel) 1277c7eeac06SToby Isaac { 1278c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1279c7eeac06SToby Isaac PetscErrorCode ierr; 1280c7eeac06SToby Isaac 1281c7eeac06SToby Isaac PetscFunctionBegin; 1282c7eeac06SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1283ebdf65a2SToby Isaac ierr = PetscFree(forest->adaptLabel);CHKERRQ(ierr); 1284ebdf65a2SToby Isaac ierr = PetscStrallocpy(adaptLabel,&forest->adaptLabel);CHKERRQ(ierr); 1285c7eeac06SToby Isaac PetscFunctionReturn(0); 1286c7eeac06SToby Isaac } 1287c7eeac06SToby Isaac 1288c7eeac06SToby Isaac #undef __FUNCT__ 1289ebdf65a2SToby Isaac #define __FUNCT__ "DMForestGetAdaptivityLabel" 12909be51f97SToby Isaac /*@C 12919be51f97SToby Isaac DMForestGetAdaptivityLabel - Get the label of the pre-adaptation forest (see DMForestGetAdaptivityForest()) that 12929be51f97SToby Isaac holds the adaptation flags (refinement, coarsening, or some combination). The interpretation of the label values is 12939be51f97SToby Isaac up to the subtype of DMForest, but DM_FOREST_KEEP, DM_FOREST_REFINE, and DM_FOREST_COARSEN have been reserved as 12949be51f97SToby Isaac choices that should be accepted by all subtypes. 12959be51f97SToby Isaac 12969be51f97SToby Isaac Not collective 12979be51f97SToby Isaac 12989be51f97SToby Isaac Input Parameter: 12999be51f97SToby Isaac . dm - the forest 13009be51f97SToby Isaac 13019be51f97SToby Isaac Output Parameter: 13029be51f97SToby Isaac . adaptLabel - the name of the label in the pre-adaptation forest 13039be51f97SToby Isaac 13049be51f97SToby Isaac Level: intermediate 13059be51f97SToby Isaac 13069be51f97SToby Isaac .seealso DMForestSetAdaptivityLabel() 13079be51f97SToby Isaac @*/ 1308ba936b91SToby Isaac PetscErrorCode DMForestGetAdaptivityLabel(DM dm, const char ** adaptLabel) 1309c7eeac06SToby Isaac { 1310c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1311c7eeac06SToby Isaac 1312c7eeac06SToby Isaac PetscFunctionBegin; 1313c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1314ba936b91SToby Isaac *adaptLabel = forest->adaptLabel; 1315c7eeac06SToby Isaac PetscFunctionReturn(0); 1316c7eeac06SToby Isaac } 1317c7eeac06SToby Isaac 1318c7eeac06SToby Isaac #undef __FUNCT__ 1319c7eeac06SToby Isaac #define __FUNCT__ "DMForestSetCellWeights" 13209be51f97SToby Isaac /*@ 13219be51f97SToby Isaac DMForestSetCellWeights - Set the weights assigned to each of the cells (see DMForestGetCellChart()) of the current 13229be51f97SToby Isaac process: weights are used to determine parallel partitioning. Partitions will be created so that each process's 13239be51f97SToby Isaac ratio of weight to capacity (see DMForestSetWeightCapacity()) is roughly equal. If NULL, each cell receives a weight 13249be51f97SToby Isaac of 1. 13259be51f97SToby Isaac 13269be51f97SToby Isaac Logically collective on dm 13279be51f97SToby Isaac 13289be51f97SToby Isaac Input Parameters: 13299be51f97SToby Isaac + dm - the forest 13309be51f97SToby Isaac . weights - the array of weights for all cells, or NULL to indicate each cell has weight 1. 13319be51f97SToby Isaac - copyMode - how weights should reference weights 13329be51f97SToby Isaac 13339be51f97SToby Isaac Level: advanced 13349be51f97SToby Isaac 13359be51f97SToby Isaac .seealso: DMForestGetCellWeights(), DMForestSetWeightCapacity() 13369be51f97SToby Isaac @*/ 1337c7eeac06SToby Isaac PetscErrorCode DMForestSetCellWeights(DM dm, PetscReal weights[], PetscCopyMode copyMode) 1338c7eeac06SToby Isaac { 1339c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1340c7eeac06SToby Isaac PetscInt cStart, cEnd; 1341c7eeac06SToby Isaac PetscErrorCode ierr; 1342c7eeac06SToby Isaac 1343c7eeac06SToby Isaac PetscFunctionBegin; 1344c7eeac06SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1345c7eeac06SToby Isaac ierr = DMForestGetCellChart(dm,&cStart,&cEnd);CHKERRQ(ierr); 1346c7eeac06SToby Isaac if (cEnd < cStart) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"cell chart [%d,%d) is not valid",cStart,cEnd); 1347c7eeac06SToby Isaac if (copyMode == PETSC_COPY_VALUES) { 1348c7eeac06SToby Isaac if (forest->cellWeightsCopyMode != PETSC_OWN_POINTER || forest->cellWeights == weights) { 1349c7eeac06SToby Isaac ierr = PetscMalloc1(cEnd-cStart,&forest->cellWeights);CHKERRQ(ierr); 1350c7eeac06SToby Isaac } 1351c7eeac06SToby Isaac ierr = PetscMemcpy(forest->cellWeights,weights,(cEnd-cStart)*sizeof(*weights));CHKERRQ(ierr); 1352c7eeac06SToby Isaac forest->cellWeightsCopyMode = PETSC_OWN_POINTER; 1353c7eeac06SToby Isaac PetscFunctionReturn(0); 1354c7eeac06SToby Isaac } 1355c7eeac06SToby Isaac if (forest->cellWeightsCopyMode == PETSC_OWN_POINTER) { 1356c7eeac06SToby Isaac ierr = PetscFree(forest->cellWeights);CHKERRQ(ierr); 1357c7eeac06SToby Isaac } 1358c7eeac06SToby Isaac forest->cellWeights = weights; 1359c7eeac06SToby Isaac forest->cellWeightsCopyMode = copyMode; 1360c7eeac06SToby Isaac PetscFunctionReturn(0); 1361c7eeac06SToby Isaac } 1362c7eeac06SToby Isaac 1363c7eeac06SToby Isaac #undef __FUNCT__ 1364c7eeac06SToby Isaac #define __FUNCT__ "DMForestGetCellWeights" 13659be51f97SToby Isaac /*@ 13669be51f97SToby Isaac DMForestGetCellWeights - Get the weights assigned to each of the cells (see DMForestGetCellChart()) of the current 13679be51f97SToby Isaac process: weights are used to determine parallel partitioning. Partitions will be created so that each process's 13689be51f97SToby Isaac ratio of weight to capacity (see DMForestSetWeightCapacity()) is roughly equal. If NULL, each cell receives a weight 13699be51f97SToby Isaac of 1. 13709be51f97SToby Isaac 13719be51f97SToby Isaac Not collective 13729be51f97SToby Isaac 13739be51f97SToby Isaac Input Parameter: 13749be51f97SToby Isaac . dm - the forest 13759be51f97SToby Isaac 13769be51f97SToby Isaac Output Parameter: 13779be51f97SToby Isaac . weights - the array of weights for all cells, or NULL to indicate each cell has weight 1. 13789be51f97SToby Isaac 13799be51f97SToby Isaac Level: advanced 13809be51f97SToby Isaac 13819be51f97SToby Isaac .seealso: DMForestSetCellWeights(), DMForestSetWeightCapacity() 13829be51f97SToby Isaac @*/ 1383c7eeac06SToby Isaac PetscErrorCode DMForestGetCellWeights(DM dm, PetscReal **weights) 1384c7eeac06SToby Isaac { 1385c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1386c7eeac06SToby Isaac 1387c7eeac06SToby Isaac PetscFunctionBegin; 1388c7eeac06SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1389c7eeac06SToby Isaac PetscValidPointer(weights,2); 1390c7eeac06SToby Isaac *weights = forest->cellWeights; 1391c7eeac06SToby Isaac PetscFunctionReturn(0); 1392c7eeac06SToby Isaac } 1393c7eeac06SToby Isaac 1394c7eeac06SToby Isaac #undef __FUNCT__ 1395c7eeac06SToby Isaac #define __FUNCT__ "DMForestSetWeightCapacity" 13969be51f97SToby Isaac /*@ 13979be51f97SToby Isaac DMForestSetWeightCapacity - During the pre-setup phase, set the capacity of the current process when repartitioning 13989be51f97SToby Isaac a pre-adaptation forest (see DMForestGetAdaptivityForest()). After partitioning, the ratio of the weight of each 13999be51f97SToby Isaac process's cells to the process's capacity will be roughly equal for all processes. A capacity of 0 indicates that 14009be51f97SToby Isaac the current process should not have any cells after repartitioning. 14019be51f97SToby Isaac 14029be51f97SToby Isaac Logically Collective on dm 14039be51f97SToby Isaac 14049be51f97SToby Isaac Input parameters: 14059be51f97SToby Isaac + dm - the forest 14069be51f97SToby Isaac - capacity - this process's capacity 14079be51f97SToby Isaac 14089be51f97SToby Isaac Level: advanced 14099be51f97SToby Isaac 14109be51f97SToby Isaac .seealso DMForestGetWeightCapacity(), DMForestSetCellWeights(), DMForestSetCellWeightFactor() 14119be51f97SToby Isaac @*/ 1412c7eeac06SToby Isaac PetscErrorCode DMForestSetWeightCapacity(DM dm, PetscReal capacity) 1413c7eeac06SToby Isaac { 1414c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1415c7eeac06SToby Isaac 1416c7eeac06SToby Isaac PetscFunctionBegin; 1417c7eeac06SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1418ef51cf95SToby Isaac if (dm->setupcalled) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot change the weight capacity after setup"); 1419c7eeac06SToby Isaac if (capacity < 0.) SETERRQ1(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"Cannot have negative weight capacity; %f",capacity); 1420c7eeac06SToby Isaac forest->weightCapacity = capacity; 1421c7eeac06SToby Isaac PetscFunctionReturn(0); 1422c7eeac06SToby Isaac } 1423c7eeac06SToby Isaac 1424c7eeac06SToby Isaac #undef __FUNCT__ 1425c7eeac06SToby Isaac #define __FUNCT__ "DMForestGetWeightCapacity" 14269be51f97SToby Isaac /*@ 14279be51f97SToby Isaac DMForestGetWeightCapacity - Set the capacity of the current process when repartitioning a pre-adaptation forest (see 14289be51f97SToby Isaac DMForestGetAdaptivityForest()). After partitioning, the ratio of the weight of each process's cells to the 14299be51f97SToby Isaac process's capacity will be roughly equal for all processes. A capacity of 0 indicates that the current process 14309be51f97SToby Isaac should not have any cells after repartitioning. 14319be51f97SToby Isaac 14329be51f97SToby Isaac Not collective 14339be51f97SToby Isaac 14349be51f97SToby Isaac Input parameter: 14359be51f97SToby Isaac . dm - the forest 14369be51f97SToby Isaac 14379be51f97SToby Isaac Output parameter: 14389be51f97SToby Isaac . capacity - this process's capacity 14399be51f97SToby Isaac 14409be51f97SToby Isaac Level: advanced 14419be51f97SToby Isaac 14429be51f97SToby Isaac .seealso DMForestSetWeightCapacity(), DMForestSetCellWeights(), DMForestSetCellWeightFactor() 14439be51f97SToby Isaac @*/ 1444c7eeac06SToby Isaac PetscErrorCode DMForestGetWeightCapacity(DM dm, PetscReal *capacity) 1445c7eeac06SToby Isaac { 1446c7eeac06SToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 1447c7eeac06SToby Isaac 1448c7eeac06SToby Isaac PetscFunctionBegin; 1449c7eeac06SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1450c7eeac06SToby Isaac PetscValidRealPointer(capacity,2); 1451c7eeac06SToby Isaac *capacity = forest->weightCapacity; 1452c7eeac06SToby Isaac PetscFunctionReturn(0); 1453c7eeac06SToby Isaac } 1454c7eeac06SToby Isaac 1455dd8e54a2SToby Isaac #undef __FUNCT__ 1456db4d5e8cSToby Isaac #define __FUNCT__ "DMSetFromOptions_Forest" 14570709b2feSToby Isaac PETSC_EXTERN PetscErrorCode DMSetFromOptions_Forest(PetscOptionItems *PetscOptionsObject,DM dm) 1458db4d5e8cSToby Isaac { 1459db4d5e8cSToby Isaac DM_Forest *forest = (DM_Forest*) dm->data; 146056ba9f64SToby Isaac PetscBool flg, flg1, flg2, flg3, flg4; 1461dd8e54a2SToby Isaac DMForestTopology oldTopo; 1462c7eeac06SToby Isaac char stringBuffer[256]; 1463dd8e54a2SToby Isaac PetscViewer viewer; 1464dd8e54a2SToby Isaac PetscViewerFormat format; 146556ba9f64SToby Isaac PetscInt adjDim, adjCodim, overlap, minRefinement, initRefinement, maxRefinement, grade; 1466c7eeac06SToby Isaac PetscReal weightsFactor; 1467c7eeac06SToby Isaac DMForestAdaptivityStrategy adaptStrategy; 1468db4d5e8cSToby Isaac PetscErrorCode ierr; 1469db4d5e8cSToby Isaac 1470db4d5e8cSToby Isaac PetscFunctionBegin; 1471db4d5e8cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 147258762b62SToby Isaac forest->setfromoptionscalled = PETSC_TRUE; 1473dd8e54a2SToby Isaac ierr = DMForestGetTopology(dm, &oldTopo);CHKERRQ(ierr); 1474a3eda1eaSToby Isaac ierr = PetscOptionsHead(PetscOptionsObject,"DMForest Options");CHKERRQ(ierr); 147556ba9f64SToby Isaac ierr = PetscOptionsString("-dm_forest_topology","the topology of the forest's base mesh","DMForestSetTopology",oldTopo,stringBuffer,256,&flg1);CHKERRQ(ierr); 147656ba9f64SToby Isaac ierr = PetscOptionsViewer("-dm_forest_base_dm","load the base DM from a viewer specification","DMForestSetBaseDM",&viewer,&format,&flg2);CHKERRQ(ierr); 147756ba9f64SToby Isaac ierr = PetscOptionsViewer("-dm_forest_coarse_forest","load the coarse forest from a viewer specification","DMForestSetCoarseForest",&viewer,&format,&flg3);CHKERRQ(ierr); 147856ba9f64SToby Isaac ierr = PetscOptionsViewer("-dm_forest_fine_forest","load the fine forest from a viewer specification","DMForestSetFineForest",&viewer,&format,&flg4);CHKERRQ(ierr); 1479f885a11aSToby Isaac if ((PetscInt) flg1 + (PetscInt) flg2 + (PetscInt) flg3 + (PetscInt) flg4 > 1) SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_INCOMP,"Specify only one of -dm_forest_{topology,base_dm,coarse_forest,fine_forest}"); 148056ba9f64SToby Isaac if (flg1) { 148156ba9f64SToby Isaac ierr = DMForestSetTopology(dm,(DMForestTopology)stringBuffer);CHKERRQ(ierr); 148256ba9f64SToby Isaac ierr = DMForestSetBaseDM(dm,NULL);CHKERRQ(ierr); 148320e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(dm,NULL);CHKERRQ(ierr); 148456ba9f64SToby Isaac } 148556ba9f64SToby Isaac if (flg2) { 1486dd8e54a2SToby Isaac DM base; 1487dd8e54a2SToby Isaac 1488dd8e54a2SToby Isaac ierr = DMCreate(PetscObjectComm((PetscObject)dm),&base);CHKERRQ(ierr); 1489dd8e54a2SToby Isaac ierr = PetscViewerPushFormat(viewer,format);CHKERRQ(ierr); 1490dd8e54a2SToby Isaac ierr = DMLoad(base,viewer);CHKERRQ(ierr); 1491dd8e54a2SToby Isaac ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 1492dd8e54a2SToby Isaac ierr = DMForestSetBaseDM(dm,base);CHKERRQ(ierr); 1493dd8e54a2SToby Isaac ierr = DMDestroy(&base);CHKERRQ(ierr); 149456ba9f64SToby Isaac ierr = DMForestSetTopology(dm,NULL);CHKERRQ(ierr); 149520e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(dm,NULL);CHKERRQ(ierr); 1496dd8e54a2SToby Isaac } 149756ba9f64SToby Isaac if (flg3) { 1498dd8e54a2SToby Isaac DM coarse; 1499dd8e54a2SToby Isaac 1500dd8e54a2SToby Isaac ierr = DMCreate(PetscObjectComm((PetscObject)dm),&coarse);CHKERRQ(ierr); 1501dd8e54a2SToby Isaac ierr = PetscViewerPushFormat(viewer,format);CHKERRQ(ierr); 1502dd8e54a2SToby Isaac ierr = DMLoad(coarse,viewer);CHKERRQ(ierr); 1503dd8e54a2SToby Isaac ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 150420e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(dm,coarse);CHKERRQ(ierr); 1505dd8e54a2SToby Isaac ierr = DMDestroy(&coarse);CHKERRQ(ierr); 150656ba9f64SToby Isaac ierr = DMForestSetTopology(dm,NULL);CHKERRQ(ierr); 150756ba9f64SToby Isaac ierr = DMForestSetBaseDM(dm,NULL);CHKERRQ(ierr); 1508dd8e54a2SToby Isaac } 150956ba9f64SToby Isaac if (flg4) { 1510dd8e54a2SToby Isaac DM fine; 1511dd8e54a2SToby Isaac 1512dd8e54a2SToby Isaac ierr = DMCreate(PetscObjectComm((PetscObject)dm),&fine);CHKERRQ(ierr); 1513dd8e54a2SToby Isaac ierr = PetscViewerPushFormat(viewer,format);CHKERRQ(ierr); 1514dd8e54a2SToby Isaac ierr = DMLoad(fine,viewer);CHKERRQ(ierr); 1515dd8e54a2SToby Isaac ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr); 151620e8089bSToby Isaac ierr = DMForestSetAdaptivityForest(dm,fine);CHKERRQ(ierr); 1517dd8e54a2SToby Isaac ierr = DMDestroy(&fine);CHKERRQ(ierr); 151856ba9f64SToby Isaac ierr = DMForestSetTopology(dm,NULL);CHKERRQ(ierr); 151956ba9f64SToby Isaac ierr = DMForestSetBaseDM(dm,NULL);CHKERRQ(ierr); 1520dd8e54a2SToby Isaac } 1521dd8e54a2SToby Isaac ierr = DMForestGetAdjacencyDimension(dm,&adjDim);CHKERRQ(ierr); 1522dd8e54a2SToby Isaac ierr = PetscOptionsInt("-dm_forest_adjacency_dimension","set the dimension of points that define adjacency in the forest","DMForestSetAdjacencyDimension",adjDim,&adjDim,&flg);CHKERRQ(ierr); 1523dd8e54a2SToby Isaac if (flg) { 1524dd8e54a2SToby Isaac ierr = DMForestSetAdjacencyDimension(dm,adjDim);CHKERRQ(ierr); 1525f885a11aSToby Isaac } else { 1526dd8e54a2SToby Isaac ierr = DMForestGetAdjacencyCodimension(dm,&adjCodim);CHKERRQ(ierr); 1527dd8e54a2SToby Isaac ierr = PetscOptionsInt("-dm_forest_adjacency_codimension","set the codimension of points that define adjacency in the forest","DMForestSetAdjacencyCodimension",adjCodim,&adjCodim,&flg);CHKERRQ(ierr); 1528dd8e54a2SToby Isaac if (flg) { 1529dd8e54a2SToby Isaac ierr = DMForestSetAdjacencyCodimension(dm,adjCodim);CHKERRQ(ierr); 1530dd8e54a2SToby Isaac } 1531dd8e54a2SToby Isaac } 1532dd8e54a2SToby Isaac ierr = DMForestGetPartitionOverlap(dm,&overlap);CHKERRQ(ierr); 1533dd8e54a2SToby Isaac ierr = PetscOptionsInt("-dm_forest_partition_overlap","set the degree of partition overlap","DMForestSetPartitionOverlap",overlap,&overlap,&flg);CHKERRQ(ierr); 1534dd8e54a2SToby Isaac if (flg) { 1535dd8e54a2SToby Isaac ierr = DMForestSetPartitionOverlap(dm,overlap);CHKERRQ(ierr); 1536dd8e54a2SToby Isaac } 1537a6121fbdSMatthew G. Knepley #if 0 1538a6121fbdSMatthew G. Knepley ierr = PetscOptionsInt("-dm_refine","equivalent to -dm_forest_set_minimum_refinement and -dm_forest_set_initial_refinement with the same value",NULL,minRefinement,&minRefinement,&flg);CHKERRQ(ierr); 1539a6121fbdSMatthew G. Knepley if (flg) { 1540a6121fbdSMatthew G. Knepley ierr = DMForestSetMinimumRefinement(dm,minRefinement);CHKERRQ(ierr); 1541a6121fbdSMatthew G. Knepley ierr = DMForestSetInitialRefinement(dm,minRefinement);CHKERRQ(ierr); 1542a6121fbdSMatthew G. Knepley } 1543a6121fbdSMatthew G. Knepley ierr = PetscOptionsInt("-dm_refine_hierarchy","equivalent to -dm_forest_set_minimum_refinement 0 and -dm_forest_set_initial_refinement",NULL,initRefinement,&initRefinement,&flg);CHKERRQ(ierr); 1544a6121fbdSMatthew G. Knepley if (flg) { 1545a6121fbdSMatthew G. Knepley ierr = DMForestSetMinimumRefinement(dm,0);CHKERRQ(ierr); 1546a6121fbdSMatthew G. Knepley ierr = DMForestSetInitialRefinement(dm,initRefinement);CHKERRQ(ierr); 1547a6121fbdSMatthew G. Knepley } 1548a6121fbdSMatthew G. Knepley #endif 1549dd8e54a2SToby Isaac ierr = DMForestGetMinimumRefinement(dm,&minRefinement);CHKERRQ(ierr); 1550dd8e54a2SToby Isaac ierr = PetscOptionsInt("-dm_forest_minimum_refinement","set the minimum level of refinement in the forest","DMForestSetMinimumRefinement",minRefinement,&minRefinement,&flg);CHKERRQ(ierr); 1551dd8e54a2SToby Isaac if (flg) { 1552dd8e54a2SToby Isaac ierr = DMForestSetMinimumRefinement(dm,minRefinement);CHKERRQ(ierr); 1553db4d5e8cSToby Isaac } 155456ba9f64SToby Isaac ierr = DMForestGetInitialRefinement(dm,&initRefinement);CHKERRQ(ierr); 155556ba9f64SToby Isaac ierr = PetscOptionsInt("-dm_forest_initial_refinement","set the initial level of refinement in the forest","DMForestSetInitialRefinement",initRefinement,&initRefinement,&flg);CHKERRQ(ierr); 155656ba9f64SToby Isaac if (flg) { 155756ba9f64SToby Isaac ierr = DMForestSetInitialRefinement(dm,initRefinement);CHKERRQ(ierr); 155856ba9f64SToby Isaac } 1559c7eeac06SToby Isaac ierr = DMForestGetMaximumRefinement(dm,&maxRefinement);CHKERRQ(ierr); 1560c7eeac06SToby Isaac ierr = PetscOptionsInt("-dm_forest_maximum_refinement","set the maximum level of refinement in the forest","DMForestSetMaximumRefinement",maxRefinement,&maxRefinement,&flg);CHKERRQ(ierr); 1561c7eeac06SToby Isaac if (flg) { 1562c7eeac06SToby Isaac ierr = DMForestSetMaximumRefinement(dm,maxRefinement);CHKERRQ(ierr); 1563c7eeac06SToby Isaac } 1564c7eeac06SToby Isaac ierr = DMForestGetAdaptivityStrategy(dm,&adaptStrategy);CHKERRQ(ierr); 1565c7eeac06SToby Isaac ierr = PetscOptionsString("-dm_forest_adaptivity_strategy","the forest's adaptivity-flag resolution strategy","DMForestSetAdaptivityStrategy",adaptStrategy,stringBuffer,256,&flg);CHKERRQ(ierr); 1566c7eeac06SToby Isaac if (flg) { 1567c7eeac06SToby Isaac ierr = DMForestSetAdaptivityStrategy(dm,(DMForestAdaptivityStrategy)stringBuffer);CHKERRQ(ierr); 1568c7eeac06SToby Isaac } 1569c7eeac06SToby Isaac ierr = DMForestGetGradeFactor(dm,&grade);CHKERRQ(ierr); 1570c7eeac06SToby Isaac ierr = PetscOptionsInt("-dm_forest_grade_factor","grade factor between neighboring cells","DMForestSetGradeFactor",grade,&grade,&flg);CHKERRQ(ierr); 1571c7eeac06SToby Isaac if (flg) { 1572c7eeac06SToby Isaac ierr = DMForestSetGradeFactor(dm,grade);CHKERRQ(ierr); 1573c7eeac06SToby Isaac } 1574c7eeac06SToby Isaac ierr = DMForestGetCellWeightFactor(dm,&weightsFactor);CHKERRQ(ierr); 1575c7eeac06SToby Isaac ierr = PetscOptionsReal("-dm_forest_cell_weight_factor","multiplying weight factor for cell refinement","DMForestSetCellWeightFactor",weightsFactor,&weightsFactor,&flg);CHKERRQ(ierr); 1576c7eeac06SToby Isaac if (flg) { 1577c7eeac06SToby Isaac ierr = DMForestSetCellWeightFactor(dm,weightsFactor);CHKERRQ(ierr); 1578c7eeac06SToby Isaac } 1579db4d5e8cSToby Isaac ierr = PetscOptionsTail();CHKERRQ(ierr); 1580db4d5e8cSToby Isaac PetscFunctionReturn(0); 1581db4d5e8cSToby Isaac } 1582db4d5e8cSToby Isaac 1583db4d5e8cSToby Isaac #undef __FUNCT__ 1584d8984e3bSMatthew G. Knepley #define __FUNCT__ "DMCreateSubDM_Forest" 1585d8984e3bSMatthew G. Knepley PetscErrorCode DMCreateSubDM_Forest(DM dm, PetscInt numFields, PetscInt fields[], IS *is, DM *subdm) 1586d8984e3bSMatthew G. Knepley { 1587d8984e3bSMatthew G. Knepley PetscErrorCode ierr; 1588d8984e3bSMatthew G. Knepley 1589d8984e3bSMatthew G. Knepley PetscFunctionBegin; 1590d8984e3bSMatthew G. Knepley if (subdm) {ierr = DMClone(dm, subdm);CHKERRQ(ierr);} 1591d8984e3bSMatthew G. Knepley ierr = DMCreateSubDM_Section_Private(dm, numFields, fields, is, subdm);CHKERRQ(ierr); 1592d8984e3bSMatthew G. Knepley PetscFunctionReturn(0); 1593d8984e3bSMatthew G. Knepley } 1594d8984e3bSMatthew G. Knepley 1595d8984e3bSMatthew G. Knepley #undef __FUNCT__ 15965421bac9SToby Isaac #define __FUNCT__ "DMRefine_Forest" 15975421bac9SToby Isaac PetscErrorCode DMRefine_Forest(DM dm, MPI_Comm comm, DM *dmRefined) 15985421bac9SToby Isaac { 15995421bac9SToby Isaac DMLabel refine; 16005421bac9SToby Isaac DM fineDM; 16015421bac9SToby Isaac PetscErrorCode ierr; 16025421bac9SToby Isaac 16035421bac9SToby Isaac PetscFunctionBegin; 16045421bac9SToby Isaac ierr = DMGetFineDM(dm,&fineDM);CHKERRQ(ierr); 16055421bac9SToby Isaac if (fineDM) { 16065421bac9SToby Isaac ierr = PetscObjectReference((PetscObject)fineDM);CHKERRQ(ierr); 16075421bac9SToby Isaac *dmRefined = fineDM; 16085421bac9SToby Isaac PetscFunctionReturn(0); 16095421bac9SToby Isaac } 16105421bac9SToby Isaac ierr = DMForestTemplate(dm,comm,dmRefined);CHKERRQ(ierr); 16115421bac9SToby Isaac ierr = DMGetLabel(dm,"refine",&refine);CHKERRQ(ierr); 16125421bac9SToby Isaac if (!refine) { 16135421bac9SToby Isaac ierr = DMCreateLabel(dm,"refine");CHKERRQ(ierr); 16145421bac9SToby Isaac ierr = DMGetLabel(dm,"refine",&refine);CHKERRQ(ierr); 16155421bac9SToby Isaac ierr = DMLabelSetDefaultValue(refine,DM_FOREST_REFINE);CHKERRQ(ierr); 16165421bac9SToby Isaac } 16175421bac9SToby Isaac ierr = DMForestSetAdaptivityLabel(*dmRefined,"refine");CHKERRQ(ierr); 16185421bac9SToby Isaac PetscFunctionReturn(0); 16195421bac9SToby Isaac } 16205421bac9SToby Isaac 16215421bac9SToby Isaac #undef __FUNCT__ 16225421bac9SToby Isaac #define __FUNCT__ "DMCoarsen_Forest" 16235421bac9SToby Isaac PetscErrorCode DMCoarsen_Forest(DM dm, MPI_Comm comm, DM *dmCoarsened) 16245421bac9SToby Isaac { 16255421bac9SToby Isaac DMLabel coarsen; 16265421bac9SToby Isaac DM coarseDM; 16275421bac9SToby Isaac PetscErrorCode ierr; 16285421bac9SToby Isaac 16295421bac9SToby Isaac PetscFunctionBegin; 16304098eed7SToby Isaac { 16314098eed7SToby Isaac PetscMPIInt mpiComparison; 16324098eed7SToby Isaac MPI_Comm dmcomm = PetscObjectComm((PetscObject)dm); 16334098eed7SToby Isaac 16344098eed7SToby Isaac ierr = MPI_Comm_compare(comm, dmcomm, &mpiComparison);CHKERRQ(ierr); 1635f885a11aSToby Isaac if (mpiComparison != MPI_IDENT && mpiComparison != MPI_CONGRUENT) SETERRQ(dmcomm,PETSC_ERR_SUP,"No support for different communicators yet"); 16364098eed7SToby Isaac } 16375421bac9SToby Isaac ierr = DMGetCoarseDM(dm,&coarseDM);CHKERRQ(ierr); 16385421bac9SToby Isaac if (coarseDM) { 16395421bac9SToby Isaac ierr = PetscObjectReference((PetscObject)coarseDM);CHKERRQ(ierr); 16405421bac9SToby Isaac *dmCoarsened = coarseDM; 16415421bac9SToby Isaac PetscFunctionReturn(0); 16425421bac9SToby Isaac } 16435421bac9SToby Isaac ierr = DMForestTemplate(dm,comm,dmCoarsened);CHKERRQ(ierr); 16444098eed7SToby Isaac ierr = DMForestSetAdaptivityPurpose(coarseDM,DM_FOREST_COARSEN);CHKERRQ(ierr); 16455421bac9SToby Isaac ierr = DMGetLabel(dm,"coarsen",&coarsen);CHKERRQ(ierr); 16465421bac9SToby Isaac if (!coarsen) { 16475421bac9SToby Isaac ierr = DMCreateLabel(dm,"coarsen");CHKERRQ(ierr); 16485421bac9SToby Isaac ierr = DMGetLabel(dm,"coarsen",&coarsen);CHKERRQ(ierr); 16495421bac9SToby Isaac ierr = DMLabelSetDefaultValue(coarsen,DM_FOREST_COARSEN);CHKERRQ(ierr); 16505421bac9SToby Isaac } 16515421bac9SToby Isaac ierr = DMForestSetAdaptivityLabel(*dmCoarsened,"coarsen");CHKERRQ(ierr); 16525421bac9SToby Isaac PetscFunctionReturn(0); 16535421bac9SToby Isaac } 16545421bac9SToby Isaac 16555421bac9SToby Isaac #undef __FUNCT__ 1656d222f98bSToby Isaac #define __FUNCT__ "DMInitialize_Forest" 1657d222f98bSToby Isaac static PetscErrorCode DMInitialize_Forest(DM dm) 1658d222f98bSToby Isaac { 1659d222f98bSToby Isaac PetscErrorCode ierr; 1660d222f98bSToby Isaac 1661d222f98bSToby Isaac PetscFunctionBegin; 1662d222f98bSToby Isaac ierr = PetscMemzero(dm->ops,sizeof(*(dm->ops)));CHKERRQ(ierr); 1663d222f98bSToby Isaac 1664d222f98bSToby Isaac dm->ops->clone = DMClone_Forest; 1665d222f98bSToby Isaac dm->ops->setfromoptions = DMSetFromOptions_Forest; 1666d222f98bSToby Isaac dm->ops->destroy = DMDestroy_Forest; 1667d8984e3bSMatthew G. Knepley dm->ops->createsubdm = DMCreateSubDM_Forest; 16685421bac9SToby Isaac dm->ops->refine = DMRefine_Forest; 16695421bac9SToby Isaac dm->ops->coarsen = DMCoarsen_Forest; 1670d222f98bSToby Isaac PetscFunctionReturn(0); 1671d222f98bSToby Isaac } 1672d222f98bSToby Isaac 16739be51f97SToby Isaac /*MC 16749be51f97SToby Isaac DMFOREST = "forest" - A DM object that encapsulates a hierarchically refined mesh. Forests usually have a base DM (see DMForestGetBaseDM()), from which it is refined. The refinement and partitioning of forests is considered immutable after DMSetUp() is called. To adapt a mesh, one should call DMForestTemplate() to create a new mesh that will default to being identical to it, specify how that mesh should differ, and then calling DMSetUp() on the new mesh. 16759be51f97SToby Isaac 16769be51f97SToby Isaac To specify that a mesh should be refined or coarsened from the previous mesh, a label should be defined on the previous mesh whose values indicate which cells should be refined (DM_FOREST_REFINE) or coarsened (DM_FOREST_COARSEN) and how (subtypes are free to allow additional values for things like anisotropic refinement). The name of the label should be given to the *new* mesh with DMForestSetAdaptivityLabel(). 16779be51f97SToby Isaac 16789be51f97SToby Isaac Level: advanced 16799be51f97SToby Isaac 16809be51f97SToby Isaac .seealso: DMType, DMCreate(), DMSetType(), DMForestGetBaseDM(), DMForestSetBaseDM(), DMForestTemplate(), DMForestSetAdaptivityLabel() 16819be51f97SToby Isaac M*/ 16829be51f97SToby Isaac 1683d222f98bSToby Isaac #undef __FUNCT__ 1684db4d5e8cSToby Isaac #define __FUNCT__ "DMCreate_Forest" 1685db4d5e8cSToby Isaac PETSC_EXTERN PetscErrorCode DMCreate_Forest(DM dm) 1686db4d5e8cSToby Isaac { 1687db4d5e8cSToby Isaac DM_Forest *forest; 1688db4d5e8cSToby Isaac PetscErrorCode ierr; 1689db4d5e8cSToby Isaac 1690db4d5e8cSToby Isaac PetscFunctionBegin; 1691db4d5e8cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1692db4d5e8cSToby Isaac ierr = PetscNewLog(dm,&forest);CHKERRQ(ierr); 1693db4d5e8cSToby Isaac dm->dim = 0; 1694db4d5e8cSToby Isaac dm->data = forest; 1695db4d5e8cSToby Isaac forest->refct = 1; 1696db4d5e8cSToby Isaac forest->data = NULL; 169758762b62SToby Isaac forest->setfromoptionscalled = PETSC_FALSE; 1698db4d5e8cSToby Isaac forest->topology = NULL; 1699db4d5e8cSToby Isaac forest->base = NULL; 1700db4d5e8cSToby Isaac forest->adjDim = PETSC_DEFAULT; 1701db4d5e8cSToby Isaac forest->overlap = PETSC_DEFAULT; 1702db4d5e8cSToby Isaac forest->minRefinement = PETSC_DEFAULT; 1703db4d5e8cSToby Isaac forest->maxRefinement = PETSC_DEFAULT; 170456ba9f64SToby Isaac forest->initRefinement = PETSC_DEFAULT; 1705c7eeac06SToby Isaac forest->cStart = PETSC_DETERMINE; 1706c7eeac06SToby Isaac forest->cEnd = PETSC_DETERMINE; 1707db4d5e8cSToby Isaac forest->cellSF = 0; 1708ebdf65a2SToby Isaac forest->adaptLabel = NULL; 1709db4d5e8cSToby Isaac forest->gradeFactor = 2; 1710db4d5e8cSToby Isaac forest->cellWeights = NULL; 1711db4d5e8cSToby Isaac forest->cellWeightsCopyMode = PETSC_USE_POINTER; 1712db4d5e8cSToby Isaac forest->weightsFactor = 1.; 1713db4d5e8cSToby Isaac forest->weightCapacity = 1.; 1714a73e2921SToby Isaac ierr = DMForestSetAdaptivityStrategy(dm,DMFORESTADAPTALL);CHKERRQ(ierr); 1715d222f98bSToby Isaac ierr = DMInitialize_Forest(dm);CHKERRQ(ierr); 1716db4d5e8cSToby Isaac PetscFunctionReturn(0); 1717db4d5e8cSToby Isaac } 1718db4d5e8cSToby Isaac 1719