xref: /petsc/src/dm/impls/forest/forest.c (revision f826b5fc4766ec28b212df2751ddb0da872f8eb6)
19be51f97SToby Isaac #include <petsc/private/dmforestimpl.h> /*I "petscdmforest.h" I*/
29be51f97SToby Isaac #include <petsc/private/dmimpl.h>       /*I "petscdm.h" I*/
3a1b0c543SToby Isaac #include <petsc/private/dmlabelimpl.h>  /*I "petscdmlabel.h" I*/
4ef19d27cSToby Isaac #include <petscsf.h>
5db4d5e8cSToby Isaac 
627d4645fSToby Isaac PetscBool DMForestPackageInitialized = PETSC_FALSE;
727d4645fSToby Isaac 
827d4645fSToby Isaac typedef struct _DMForestTypeLink *DMForestTypeLink;
927d4645fSToby Isaac 
109371c9d4SSatish Balay struct _DMForestTypeLink {
1127d4645fSToby Isaac   char            *name;
1227d4645fSToby Isaac   DMForestTypeLink next;
1327d4645fSToby Isaac };
1427d4645fSToby Isaac 
1527d4645fSToby Isaac DMForestTypeLink DMForestTypeList;
1627d4645fSToby Isaac 
17d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestPackageFinalize(void)
18d71ae5a4SJacob Faibussowitsch {
1927d4645fSToby Isaac   DMForestTypeLink oldLink, link = DMForestTypeList;
2027d4645fSToby Isaac 
2127d4645fSToby Isaac   PetscFunctionBegin;
2227d4645fSToby Isaac   while (link) {
2327d4645fSToby Isaac     oldLink = link;
249566063dSJacob Faibussowitsch     PetscCall(PetscFree(oldLink->name));
2527d4645fSToby Isaac     link = oldLink->next;
269566063dSJacob Faibussowitsch     PetscCall(PetscFree(oldLink));
2727d4645fSToby Isaac   }
283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2927d4645fSToby Isaac }
3027d4645fSToby Isaac 
31d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestPackageInitialize(void)
32d71ae5a4SJacob Faibussowitsch {
3327d4645fSToby Isaac   PetscFunctionBegin;
343ba16761SJacob Faibussowitsch   if (DMForestPackageInitialized) PetscFunctionReturn(PETSC_SUCCESS);
3527d4645fSToby Isaac   DMForestPackageInitialized = PETSC_TRUE;
36f885a11aSToby Isaac 
379566063dSJacob Faibussowitsch   PetscCall(DMForestRegisterType(DMFOREST));
389566063dSJacob Faibussowitsch   PetscCall(PetscRegisterFinalize(DMForestPackageFinalize));
393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4027d4645fSToby Isaac }
4127d4645fSToby Isaac 
429be51f97SToby Isaac /*@C
43dce8aebaSBarry Smith   DMForestRegisterType - Registers a `DMType` as a subtype of `DMFOREST` (so that `DMIsForest()` will be correct)
449be51f97SToby Isaac 
459be51f97SToby Isaac   Not Collective
469be51f97SToby Isaac 
479be51f97SToby Isaac   Input parameter:
489be51f97SToby Isaac . name - the name of the type
499be51f97SToby Isaac 
509be51f97SToby Isaac   Level: advanced
519be51f97SToby Isaac 
52db781477SPatrick Sanan .seealso: `DMFOREST`, `DMIsForest()`
539be51f97SToby Isaac @*/
54d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestRegisterType(DMType name)
55d71ae5a4SJacob Faibussowitsch {
5627d4645fSToby Isaac   DMForestTypeLink link;
5727d4645fSToby Isaac 
5827d4645fSToby Isaac   PetscFunctionBegin;
599566063dSJacob Faibussowitsch   PetscCall(DMForestPackageInitialize());
609566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
619566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(name, &link->name));
6227d4645fSToby Isaac   link->next       = DMForestTypeList;
6327d4645fSToby Isaac   DMForestTypeList = link;
643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6527d4645fSToby Isaac }
6627d4645fSToby Isaac 
679be51f97SToby Isaac /*@
689be51f97SToby Isaac   DMIsForest - Check whether a DM uses the DMFOREST interface for hierarchically-refined meshes
699be51f97SToby Isaac 
709be51f97SToby Isaac   Not Collective
719be51f97SToby Isaac 
729be51f97SToby Isaac   Input parameter:
739be51f97SToby Isaac . dm - the DM object
749be51f97SToby Isaac 
759be51f97SToby Isaac   Output parameter:
769be51f97SToby Isaac . isForest - whether dm is a subtype of DMFOREST
779be51f97SToby Isaac 
789be51f97SToby Isaac   Level: intermediate
799be51f97SToby Isaac 
80db781477SPatrick Sanan .seealso: `DMFOREST`, `DMForestRegisterType()`
819be51f97SToby Isaac @*/
82d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsForest(DM dm, PetscBool *isForest)
83d71ae5a4SJacob Faibussowitsch {
8427d4645fSToby Isaac   DMForestTypeLink link = DMForestTypeList;
8527d4645fSToby Isaac 
8627d4645fSToby Isaac   PetscFunctionBegin;
8727d4645fSToby Isaac   while (link) {
8827d4645fSToby Isaac     PetscBool sameType;
899566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)dm, link->name, &sameType));
9027d4645fSToby Isaac     if (sameType) {
9127d4645fSToby Isaac       *isForest = PETSC_TRUE;
923ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
9327d4645fSToby Isaac     }
9427d4645fSToby Isaac     link = link->next;
9527d4645fSToby Isaac   }
9627d4645fSToby Isaac   *isForest = PETSC_FALSE;
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9827d4645fSToby Isaac }
9927d4645fSToby Isaac 
1009be51f97SToby Isaac /*@
10120f4b53cSBarry Smith   DMForestTemplate - Create a new `DM` that will be adapted from a source `DM`.  The new `DM` reproduces the configuration
10220f4b53cSBarry Smith   of the source, but is not yet setup, so that the user can then define only the ways that the new `DM` should differ
10320f4b53cSBarry Smith   (by, e.g., refinement or repartitioning).  The source `DM` is also set as the adaptivity source `DM` of the new `DM` (see
10420f4b53cSBarry Smith   `DMForestSetAdaptivityForest()`).
1059be51f97SToby Isaac 
10620f4b53cSBarry Smith   Collective
1079be51f97SToby Isaac 
1089be51f97SToby Isaac   Input Parameters:
10920f4b53cSBarry Smith + dm - the source `DM` object
11020f4b53cSBarry Smith - comm - the communicator for the new `DM` (this communicator is currently ignored, but is present so that `DMForestTemplate()` can be used within `DMCoarsen()`)
1119be51f97SToby Isaac 
1129be51f97SToby Isaac   Output Parameter:
11320f4b53cSBarry Smith . tdm - the new `DM` object
1149be51f97SToby Isaac 
1159be51f97SToby Isaac   Level: intermediate
1169be51f97SToby Isaac 
11720f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetAdaptivityForest()`
1189be51f97SToby Isaac @*/
119d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestTemplate(DM dm, MPI_Comm comm, DM *tdm)
120d71ae5a4SJacob Faibussowitsch {
121a0452a8eSToby Isaac   DM_Forest                 *forest = (DM_Forest *)dm->data;
12220e8089bSToby Isaac   DMType                     type;
123a0452a8eSToby Isaac   DM                         base;
124a0452a8eSToby Isaac   DMForestTopology           topology;
12505e99e11SStefano Zampini   MatType                    mtype;
126a0452a8eSToby Isaac   PetscInt                   dim, overlap, ref, factor;
127a0452a8eSToby Isaac   DMForestAdaptivityStrategy strat;
128795844e7SToby Isaac   void                      *ctx;
12949fc9a2fSToby Isaac   PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *);
1303e58adeeSToby Isaac   void *mapCtx;
131a0452a8eSToby Isaac 
132a0452a8eSToby Isaac   PetscFunctionBegin;
133a0452a8eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1349566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), tdm));
1359566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm, &type));
1369566063dSJacob Faibussowitsch   PetscCall(DMSetType(*tdm, type));
1379566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm, &base));
1389566063dSJacob Faibussowitsch   PetscCall(DMForestSetBaseDM(*tdm, base));
1399566063dSJacob Faibussowitsch   PetscCall(DMForestGetTopology(dm, &topology));
1409566063dSJacob Faibussowitsch   PetscCall(DMForestSetTopology(*tdm, topology));
1419566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdjacencyDimension(dm, &dim));
1429566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdjacencyDimension(*tdm, dim));
1439566063dSJacob Faibussowitsch   PetscCall(DMForestGetPartitionOverlap(dm, &overlap));
1449566063dSJacob Faibussowitsch   PetscCall(DMForestSetPartitionOverlap(*tdm, overlap));
1459566063dSJacob Faibussowitsch   PetscCall(DMForestGetMinimumRefinement(dm, &ref));
1469566063dSJacob Faibussowitsch   PetscCall(DMForestSetMinimumRefinement(*tdm, ref));
1479566063dSJacob Faibussowitsch   PetscCall(DMForestGetMaximumRefinement(dm, &ref));
1489566063dSJacob Faibussowitsch   PetscCall(DMForestSetMaximumRefinement(*tdm, ref));
1499566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityStrategy(dm, &strat));
1509566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdaptivityStrategy(*tdm, strat));
1519566063dSJacob Faibussowitsch   PetscCall(DMForestGetGradeFactor(dm, &factor));
1529566063dSJacob Faibussowitsch   PetscCall(DMForestSetGradeFactor(*tdm, factor));
1539566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseCoordinateMapping(dm, &map, &mapCtx));
1549566063dSJacob Faibussowitsch   PetscCall(DMForestSetBaseCoordinateMapping(*tdm, map, mapCtx));
1551baa6e33SBarry Smith   if (forest->ftemplate) PetscCall((*forest->ftemplate)(dm, *tdm));
1569566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdaptivityForest(*tdm, dm));
1579566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *tdm));
1589566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
1599566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*tdm, &ctx));
16090b157c4SStefano Zampini   {
1614fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *L, *Lstart;
162795844e7SToby Isaac 
1634fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
1644fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(*tdm, maxCell, Lstart, L));
165795844e7SToby Isaac   }
1669566063dSJacob Faibussowitsch   PetscCall(DMGetMatType(dm, &mtype));
1679566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(*tdm, mtype));
1683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
169a0452a8eSToby Isaac }
170a0452a8eSToby Isaac 
17101d9d024SToby Isaac static PetscErrorCode DMInitialize_Forest(DM dm);
17201d9d024SToby Isaac 
173d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMClone_Forest(DM dm, DM *newdm)
174d71ae5a4SJacob Faibussowitsch {
175db4d5e8cSToby Isaac   DM_Forest  *forest = (DM_Forest *)dm->data;
176db4d5e8cSToby Isaac   const char *type;
177db4d5e8cSToby Isaac 
178db4d5e8cSToby Isaac   PetscFunctionBegin;
179db4d5e8cSToby Isaac   forest->refct++;
180db4d5e8cSToby Isaac   (*newdm)->data = forest;
1819566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetType((PetscObject)dm, &type));
1829566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)*newdm, type));
1839566063dSJacob Faibussowitsch   PetscCall(DMInitialize_Forest(*newdm));
1843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
185db4d5e8cSToby Isaac }
186db4d5e8cSToby Isaac 
187d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDestroy_Forest(DM dm)
188d71ae5a4SJacob Faibussowitsch {
189db4d5e8cSToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
190db4d5e8cSToby Isaac 
191db4d5e8cSToby Isaac   PetscFunctionBegin;
1923ba16761SJacob Faibussowitsch   if (--forest->refct > 0) PetscFunctionReturn(PETSC_SUCCESS);
1939566063dSJacob Faibussowitsch   if (forest->destroy) PetscCall((*forest->destroy)(dm));
1949566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&forest->cellSF));
1959566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&forest->preCoarseToFine));
1969566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&forest->coarseToPreFine));
1979566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&forest->adaptLabel));
1989566063dSJacob Faibussowitsch   PetscCall(PetscFree(forest->adaptStrategy));
1999566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&forest->base));
2009566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&forest->adapt));
2019566063dSJacob Faibussowitsch   PetscCall(PetscFree(forest->topology));
2029566063dSJacob Faibussowitsch   PetscCall(PetscFree(forest));
2033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
204db4d5e8cSToby Isaac }
205db4d5e8cSToby Isaac 
2069be51f97SToby Isaac /*@C
20720f4b53cSBarry Smith   DMForestSetTopology - Set the topology of a `DMFOREST` during the pre-setup phase.  The topology is a string (e.g.
20820f4b53cSBarry Smith   "cube", "shell") and can be interpreted by subtypes of `DMFOREST`) to construct the base DM of a forest during
20920f4b53cSBarry Smith   `DMSetUp()`.
2109be51f97SToby Isaac 
21120f4b53cSBarry Smith   Logically collectiv
2129be51f97SToby Isaac 
2139be51f97SToby Isaac   Input parameters:
2149be51f97SToby Isaac + dm - the forest
2159be51f97SToby Isaac - topology - the topology of the forest
2169be51f97SToby Isaac 
2179be51f97SToby Isaac   Level: intermediate
2189be51f97SToby Isaac 
21920f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetTopology()`, `DMForestSetBaseDM()`
2209be51f97SToby Isaac @*/
221d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetTopology(DM dm, DMForestTopology topology)
222d71ae5a4SJacob Faibussowitsch {
223db4d5e8cSToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
224db4d5e8cSToby Isaac 
225db4d5e8cSToby Isaac   PetscFunctionBegin;
226db4d5e8cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22728b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the topology after setup");
2289566063dSJacob Faibussowitsch   PetscCall(PetscFree(forest->topology));
2299566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy((const char *)topology, (char **)&forest->topology));
2303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
231db4d5e8cSToby Isaac }
232db4d5e8cSToby Isaac 
2339be51f97SToby Isaac /*@C
23420f4b53cSBarry Smith   DMForestGetTopology - Get a string describing the topology of a `DMFOREST`.
2359be51f97SToby Isaac 
23620f4b53cSBarry Smith   Not Collective
2379be51f97SToby Isaac 
2389be51f97SToby Isaac   Input parameter:
2399be51f97SToby Isaac . dm - the forest
2409be51f97SToby Isaac 
2419be51f97SToby Isaac   Output parameter:
2429be51f97SToby Isaac . topology - the topology of the forest (e.g., 'cube', 'shell')
2439be51f97SToby Isaac 
2449be51f97SToby Isaac   Level: intermediate
2459be51f97SToby Isaac 
24620f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetTopology()`
2479be51f97SToby Isaac @*/
248d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetTopology(DM dm, DMForestTopology *topology)
249d71ae5a4SJacob Faibussowitsch {
250dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
251dd8e54a2SToby Isaac 
252dd8e54a2SToby Isaac   PetscFunctionBegin;
253dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
254dd8e54a2SToby Isaac   PetscValidPointer(topology, 2);
255dd8e54a2SToby Isaac   *topology = forest->topology;
2563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
257dd8e54a2SToby Isaac }
258dd8e54a2SToby Isaac 
2599be51f97SToby Isaac /*@
26020f4b53cSBarry Smith   DMForestSetBaseDM - During the pre-setup phase, set the `DM` that defines the base mesh of a `DMFOREST` forest.  The
2619be51f97SToby Isaac   forest will be hierarchically refined from the base, and all refinements/coarsenings of the forest will share its
262765b024eSBarry Smith   base.  In general, two forest must share a base to be comparable, to do things like construct interpolators.
2639be51f97SToby Isaac 
26420f4b53cSBarry Smith   Logically Collective
2659be51f97SToby Isaac 
2669be51f97SToby Isaac   Input Parameters:
2679be51f97SToby Isaac + dm - the forest
26820f4b53cSBarry Smith - base - the base `DM` of the forest
269765b024eSBarry Smith 
2709be51f97SToby Isaac   Level: intermediate
2719be51f97SToby Isaac 
27220f4b53cSBarry Smith   Note:
27320f4b53cSBarry Smith     Currently the base `DM` must be a `DMPLEX`
27420f4b53cSBarry Smith 
27520f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetBaseDM()`
2769be51f97SToby Isaac @*/
277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetBaseDM(DM dm, DM base)
278d71ae5a4SJacob Faibussowitsch {
279dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
280dd8e54a2SToby Isaac   PetscInt   dim, dimEmbed;
281dd8e54a2SToby Isaac 
282dd8e54a2SToby Isaac   PetscFunctionBegin;
283dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
28428b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the base after setup");
2859566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)base));
2869566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&forest->base));
287dd8e54a2SToby Isaac   forest->base = base;
288a0452a8eSToby Isaac   if (base) {
2894fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *Lstart, *L;
29028dfcf7cSStefano Zampini 
291a0452a8eSToby Isaac     PetscValidHeaderSpecific(base, DM_CLASSID, 2);
2929566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(base, &dim));
2939566063dSJacob Faibussowitsch     PetscCall(DMSetDimension(dm, dim));
2949566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(base, &dimEmbed));
2959566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinateDim(dm, dimEmbed));
2964fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(base, &maxCell, &Lstart, &L));
2974fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(dm, maxCell, Lstart, L));
2984fb89dddSMatthew G. Knepley   } else PetscCall(DMSetPeriodicity(dm, NULL, NULL, NULL));
2993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
300dd8e54a2SToby Isaac }
301dd8e54a2SToby Isaac 
3029be51f97SToby Isaac /*@
3039be51f97SToby Isaac   DMForestGetBaseDM - Get the base DM of a DMForest forest.  The forest will be hierarchically refined from the base,
30468d54884SBarry Smith   and all refinements/coarsenings of the forest will share its base.  In general, two forest must share a base to be
3059be51f97SToby Isaac   comparable, to do things like construct interpolators.
3069be51f97SToby Isaac 
30720f4b53cSBarry Smith   Not Collective
3089be51f97SToby Isaac 
3099be51f97SToby Isaac   Input Parameter:
3109be51f97SToby Isaac . dm - the forest
3119be51f97SToby Isaac 
3129be51f97SToby Isaac   Output Parameter:
3139be51f97SToby Isaac . base - the base DM of the forest
3149be51f97SToby Isaac 
315367003a6SStefano Zampini   Notes:
316367003a6SStefano Zampini     After DMSetUp(), the base DM will be redundantly distributed across MPI processes
317367003a6SStefano Zampini 
3189be51f97SToby Isaac   Level: intermediate
3199be51f97SToby Isaac 
32020f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetBaseDM()`
3219be51f97SToby Isaac @*/
322d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetBaseDM(DM dm, DM *base)
323d71ae5a4SJacob Faibussowitsch {
324dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
325dd8e54a2SToby Isaac 
326dd8e54a2SToby Isaac   PetscFunctionBegin;
327dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
328dd8e54a2SToby Isaac   PetscValidPointer(base, 2);
329dd8e54a2SToby Isaac   *base = forest->base;
3303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
331dd8e54a2SToby Isaac }
332dd8e54a2SToby Isaac 
333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetBaseCoordinateMapping(DM dm, PetscErrorCode (*func)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *), void *ctx)
334d71ae5a4SJacob Faibussowitsch {
335cf38a08cSToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
336cf38a08cSToby Isaac 
337cf38a08cSToby Isaac   PetscFunctionBegin;
338cf38a08cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
339cf38a08cSToby Isaac   forest->mapcoordinates    = func;
340cf38a08cSToby Isaac   forest->mapcoordinatesctx = ctx;
3413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
342cf38a08cSToby Isaac }
343cf38a08cSToby Isaac 
344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetBaseCoordinateMapping(DM dm, PetscErrorCode (**func)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *), void *ctx)
345d71ae5a4SJacob Faibussowitsch {
346cf38a08cSToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
347cf38a08cSToby Isaac 
348cf38a08cSToby Isaac   PetscFunctionBegin;
349cf38a08cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
350cf38a08cSToby Isaac   if (func) *func = forest->mapcoordinates;
351cf38a08cSToby Isaac   if (ctx) *((void **)ctx) = forest->mapcoordinatesctx;
3523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
353cf38a08cSToby Isaac }
354cf38a08cSToby Isaac 
3559be51f97SToby Isaac /*@
3569be51f97SToby Isaac   DMForestSetAdaptivityForest - During the pre-setup phase, set the forest from which the current forest will be
35720f4b53cSBarry Smith   adapted (e.g., the current forest will be refined/coarsened/repartitioned from it) in `DMSetUp()`.  Usually not needed
35820f4b53cSBarry Smith   by users directly: `DMForestTemplate()` constructs a new forest to be adapted from an old forest and calls this
3599be51f97SToby Isaac   routine.
3609be51f97SToby Isaac 
36120f4b53cSBarry Smith   Logically Collective
3629be51f97SToby Isaac 
363d8d19677SJose E. Roman   Input Parameters:
3649be51f97SToby Isaac + dm - the new forest, which will be constructed from adapt
3659be51f97SToby Isaac - adapt - the old forest
3669be51f97SToby Isaac 
3679be51f97SToby Isaac   Level: intermediate
3689be51f97SToby Isaac 
36920f4b53cSBarry Smith   Note:
37020f4b53cSBarry Smith   This can be called after setup with `adapt` = `NULL`, which will clear all internal data related to the
37120f4b53cSBarry Smith   adaptivity forest from `dm`.  This way, repeatedly adapting does not leave stale `DM` objects in memory.
37220f4b53cSBarry Smith 
37320f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetAdaptivityForest()`, `DMForestSetAdaptivityPurpose()`
3749be51f97SToby Isaac @*/
375d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetAdaptivityForest(DM dm, DM adapt)
376d71ae5a4SJacob Faibussowitsch {
377dffe73a3SToby Isaac   DM_Forest *forest, *adaptForest, *oldAdaptForest;
378dffe73a3SToby Isaac   DM         oldAdapt;
379456cc5b7SMatthew G. Knepley   PetscBool  isForest;
380dd8e54a2SToby Isaac 
381dd8e54a2SToby Isaac   PetscFunctionBegin;
382dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3831fd50544SStefano Zampini   if (adapt) PetscValidHeaderSpecific(adapt, DM_CLASSID, 2);
3849566063dSJacob Faibussowitsch   PetscCall(DMIsForest(dm, &isForest));
3853ba16761SJacob Faibussowitsch   if (!isForest) PetscFunctionReturn(PETSC_SUCCESS);
3861dca8a05SBarry Smith   PetscCheck(adapt == NULL || !dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the adaptation forest after setup");
387ba936b91SToby Isaac   forest = (DM_Forest *)dm->data;
3889566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dm, &oldAdapt));
389193eb951SToby Isaac   adaptForest    = (DM_Forest *)(adapt ? adapt->data : NULL);
390193eb951SToby Isaac   oldAdaptForest = (DM_Forest *)(oldAdapt ? oldAdapt->data : NULL);
391dffe73a3SToby Isaac   if (adaptForest != oldAdaptForest) {
3929566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&forest->preCoarseToFine));
3939566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&forest->coarseToPreFine));
3949566063dSJacob Faibussowitsch     if (forest->clearadaptivityforest) PetscCall((*forest->clearadaptivityforest)(dm));
395dffe73a3SToby Isaac   }
39626d9498aSToby Isaac   switch (forest->adaptPurpose) {
397cd3c525cSToby Isaac   case DM_ADAPT_DETERMINE:
3989566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)adapt));
3999566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&(forest->adapt)));
400ba936b91SToby Isaac     forest->adapt = adapt;
40126d9498aSToby Isaac     break;
402d71ae5a4SJacob Faibussowitsch   case DM_ADAPT_REFINE:
403d71ae5a4SJacob Faibussowitsch     PetscCall(DMSetCoarseDM(dm, adapt));
404d71ae5a4SJacob Faibussowitsch     break;
405a1b0c543SToby Isaac   case DM_ADAPT_COARSEN:
406d71ae5a4SJacob Faibussowitsch   case DM_ADAPT_COARSEN_LAST:
407d71ae5a4SJacob Faibussowitsch     PetscCall(DMSetFineDM(dm, adapt));
408d71ae5a4SJacob Faibussowitsch     break;
409d71ae5a4SJacob Faibussowitsch   default:
410d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "invalid adaptivity purpose");
41126d9498aSToby Isaac   }
4123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
413dd8e54a2SToby Isaac }
414dd8e54a2SToby Isaac 
4159be51f97SToby Isaac /*@
4169be51f97SToby Isaac   DMForestGetAdaptivityForest - Get the forest from which the current forest is adapted.
4179be51f97SToby Isaac 
41820f4b53cSBarry Smith   Not Collective
4199be51f97SToby Isaac 
4209be51f97SToby Isaac   Input Parameter:
4219be51f97SToby Isaac . dm - the forest
4229be51f97SToby Isaac 
4239be51f97SToby Isaac   Output Parameter:
42420f4b53cSBarry Smith . adapt - the forest from which `dm` is/was adapted
4259be51f97SToby Isaac 
4269be51f97SToby Isaac   Level: intermediate
4279be51f97SToby Isaac 
42820f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetAdaptivityForest()`, `DMForestSetAdaptivityPurpose()`
4299be51f97SToby Isaac @*/
430d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetAdaptivityForest(DM dm, DM *adapt)
431d71ae5a4SJacob Faibussowitsch {
432ba936b91SToby Isaac   DM_Forest *forest;
433dd8e54a2SToby Isaac 
434dd8e54a2SToby Isaac   PetscFunctionBegin;
435dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
436ba936b91SToby Isaac   forest = (DM_Forest *)dm->data;
43726d9498aSToby Isaac   switch (forest->adaptPurpose) {
438d71ae5a4SJacob Faibussowitsch   case DM_ADAPT_DETERMINE:
439d71ae5a4SJacob Faibussowitsch     *adapt = forest->adapt;
440d71ae5a4SJacob Faibussowitsch     break;
441d71ae5a4SJacob Faibussowitsch   case DM_ADAPT_REFINE:
442d71ae5a4SJacob Faibussowitsch     PetscCall(DMGetCoarseDM(dm, adapt));
443d71ae5a4SJacob Faibussowitsch     break;
444a1b0c543SToby Isaac   case DM_ADAPT_COARSEN:
445d71ae5a4SJacob Faibussowitsch   case DM_ADAPT_COARSEN_LAST:
446d71ae5a4SJacob Faibussowitsch     PetscCall(DMGetFineDM(dm, adapt));
447d71ae5a4SJacob Faibussowitsch     break;
448d71ae5a4SJacob Faibussowitsch   default:
449d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "invalid adaptivity purpose");
45026d9498aSToby Isaac   }
4513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45226d9498aSToby Isaac }
45326d9498aSToby Isaac 
4549be51f97SToby Isaac /*@
45520f4b53cSBarry Smith   DMForestSetAdaptivityPurpose - During the pre-setup phase, set whether the current `DM` is being adapted from its
45620f4b53cSBarry Smith   source (set with `DMForestSetAdaptivityForest()`) for the purpose of refinement (`DM_ADAPT_REFINE`), coarsening
45720f4b53cSBarry Smith   (`DM_ADAPT_COARSEN`), or undefined (`DM_ADAPT_DETERMINE`).  This only matters for the purposes of reference counting:
45820f4b53cSBarry Smith   during `DMDestroy()`, cyclic references can be found between `DM`s only if the cyclic reference is due to a fine/coarse
45920f4b53cSBarry Smith   relationship (see `DMSetFineDM()`/`DMSetCoarseDM()`).  If the purpose is not refinement or coarsening, and the user does
46020f4b53cSBarry Smith   not maintain a reference to the post-adaptation forest (i.e., the one created by `DMForestTemplate()`), then this can
46120f4b53cSBarry Smith   cause a memory leak.  This method is used by subtypes of `DMFOREST` when automatically constructing mesh hierarchies.
4629be51f97SToby Isaac 
46320f4b53cSBarry Smith   Logically Collective
4649be51f97SToby Isaac 
4659be51f97SToby Isaac   Input Parameters:
4669be51f97SToby Isaac + dm - the forest
467bf2d5fbbSStefano Zampini - purpose - the adaptivity purpose
4689be51f97SToby Isaac 
4699be51f97SToby Isaac   Level: advanced
4709be51f97SToby Isaac 
47120f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestTemplate()`, `DMForestSetAdaptivityForest()`, `DMForestGetAdaptivityForest()`, `DMAdaptFlag`
4729be51f97SToby Isaac @*/
473d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetAdaptivityPurpose(DM dm, DMAdaptFlag purpose)
474d71ae5a4SJacob Faibussowitsch {
47526d9498aSToby Isaac   DM_Forest *forest;
47626d9498aSToby Isaac 
47726d9498aSToby Isaac   PetscFunctionBegin;
47826d9498aSToby Isaac   forest = (DM_Forest *)dm->data;
47928b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the adaptation forest after setup");
48026d9498aSToby Isaac   if (purpose != forest->adaptPurpose) {
48126d9498aSToby Isaac     DM adapt;
48226d9498aSToby Isaac 
4839566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityForest(dm, &adapt));
4849566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)adapt));
4859566063dSJacob Faibussowitsch     PetscCall(DMForestSetAdaptivityForest(dm, NULL));
486f885a11aSToby Isaac 
48726d9498aSToby Isaac     forest->adaptPurpose = purpose;
488f885a11aSToby Isaac 
4899566063dSJacob Faibussowitsch     PetscCall(DMForestSetAdaptivityForest(dm, adapt));
4909566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&adapt));
49126d9498aSToby Isaac   }
4923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
493dd8e54a2SToby Isaac }
494dd8e54a2SToby Isaac 
49556c0450aSToby Isaac /*@
49620f4b53cSBarry Smith   DMForestGetAdaptivityPurpose - Get whether the current `DM` is being adapted from its source (set with
49720f4b53cSBarry Smith   `DMForestSetAdaptivityForest()`) for the purpose of refinement (`DM_ADAPT_REFINE`), coarsening (`DM_ADAPT_COARSEN`),
49820f4b53cSBarry Smith   coarsening only the last level (`DM_ADAPT_COARSEN_LAST`) or undefined (`DM_ADAPT_DETERMINE`).
49920f4b53cSBarry Smith   This only matters for the purposes of reference counting: during `DMDestroy()`, cyclic
50020f4b53cSBarry Smith   references can be found between `DM`s only if the cyclic reference is due to a fine/coarse relationship (see
50120f4b53cSBarry Smith   `DMSetFineDM()`/`DMSetCoarseDM()`).  If the purpose is not refinement or coarsening, and the user does not maintain a
50220f4b53cSBarry Smith   reference to the post-adaptation forest (i.e., the one created by `DMForestTemplate()`), then this can cause a memory
50320f4b53cSBarry Smith   leak.  This method is used by subtypes of `DMFOREST` when automatically constructing mesh hierarchies.
50456c0450aSToby Isaac 
50520f4b53cSBarry Smith   Not Collective
50656c0450aSToby Isaac 
50756c0450aSToby Isaac   Input Parameter:
50856c0450aSToby Isaac . dm - the forest
50956c0450aSToby Isaac 
51056c0450aSToby Isaac   Output Parameter:
511bf2d5fbbSStefano Zampini . purpose - the adaptivity purpose
51256c0450aSToby Isaac 
51356c0450aSToby Isaac   Level: advanced
51456c0450aSToby Isaac 
51520f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestTemplate()`, `DMForestSetAdaptivityForest()`, `DMForestGetAdaptivityForest()`, `DMAdaptFlag`
51656c0450aSToby Isaac @*/
517d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetAdaptivityPurpose(DM dm, DMAdaptFlag *purpose)
518d71ae5a4SJacob Faibussowitsch {
51956c0450aSToby Isaac   DM_Forest *forest;
52056c0450aSToby Isaac 
52156c0450aSToby Isaac   PetscFunctionBegin;
52256c0450aSToby Isaac   forest   = (DM_Forest *)dm->data;
52356c0450aSToby Isaac   *purpose = forest->adaptPurpose;
5243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
52556c0450aSToby Isaac }
52656c0450aSToby Isaac 
5279be51f97SToby Isaac /*@
5289be51f97SToby Isaac   DMForestSetAdjacencyDimension - During the pre-setup phase, set the dimension of interface points that determine
5299be51f97SToby Isaac   cell adjacency (for the purposes of partitioning and overlap).
5309be51f97SToby Isaac 
53120f4b53cSBarry Smith   Logically Collective
5329be51f97SToby Isaac 
5339be51f97SToby Isaac   Input Parameters:
5349be51f97SToby Isaac + dm - the forest
5359be51f97SToby Isaac - adjDim - default 0 (i.e., vertices determine adjacency)
5369be51f97SToby Isaac 
5379be51f97SToby Isaac   Level: intermediate
5389be51f97SToby Isaac 
53920f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetAdjacencyDimension()`, `DMForestSetAdjacencyCodimension()`, `DMForestSetPartitionOverlap()`
5409be51f97SToby Isaac @*/
541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetAdjacencyDimension(DM dm, PetscInt adjDim)
542d71ae5a4SJacob Faibussowitsch {
543dd8e54a2SToby Isaac   PetscInt   dim;
544dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
545dd8e54a2SToby Isaac 
546dd8e54a2SToby Isaac   PetscFunctionBegin;
547dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
54828b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the adjacency dimension after setup");
54963a3b9bcSJacob Faibussowitsch   PetscCheck(adjDim >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "adjacency dim cannot be < 0: %" PetscInt_FMT, adjDim);
5509566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
55163a3b9bcSJacob Faibussowitsch   PetscCheck(adjDim <= dim, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "adjacency dim cannot be > %" PetscInt_FMT ": %" PetscInt_FMT, dim, adjDim);
552dd8e54a2SToby Isaac   forest->adjDim = adjDim;
5533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
554dd8e54a2SToby Isaac }
555dd8e54a2SToby Isaac 
5569be51f97SToby Isaac /*@
55720f4b53cSBarry Smith   DMForestSetAdjacencyCodimension - Like `DMForestSetAdjacencyDimension()`, but specified as a co-dimension (so that,
5589be51f97SToby Isaac   e.g., adjacency based on facets can be specified by codimension 1 in all cases)
5599be51f97SToby Isaac 
56020f4b53cSBarry Smith   Logically Collective
5619be51f97SToby Isaac 
5629be51f97SToby Isaac   Input Parameters:
5639be51f97SToby Isaac + dm - the forest
56420f4b53cSBarry Smith - adjCodim - default is the dimension of the forest (see `DMGetDimension()`), since this is the codimension of vertices
5659be51f97SToby Isaac 
5669be51f97SToby Isaac   Level: intermediate
5679be51f97SToby Isaac 
56820f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetAdjacencyCodimension()`, `DMForestSetAdjacencyDimension()`
5699be51f97SToby Isaac @*/
570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetAdjacencyCodimension(DM dm, PetscInt adjCodim)
571d71ae5a4SJacob Faibussowitsch {
572dd8e54a2SToby Isaac   PetscInt dim;
573dd8e54a2SToby Isaac 
574dd8e54a2SToby Isaac   PetscFunctionBegin;
575dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5769566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
5779566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdjacencyDimension(dm, dim - adjCodim));
5783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
579dd8e54a2SToby Isaac }
580dd8e54a2SToby Isaac 
5819be51f97SToby Isaac /*@
5829be51f97SToby Isaac   DMForestGetAdjacencyDimension - Get the dimension of interface points that determine cell adjacency (for the
5839be51f97SToby Isaac   purposes of partitioning and overlap).
5849be51f97SToby Isaac 
58520f4b53cSBarry Smith   Not Collective
5869be51f97SToby Isaac 
5879be51f97SToby Isaac   Input Parameter:
5889be51f97SToby Isaac . dm - the forest
5899be51f97SToby Isaac 
5909be51f97SToby Isaac   Output Parameter:
5919be51f97SToby Isaac . adjDim - default 0 (i.e., vertices determine adjacency)
5929be51f97SToby Isaac 
5939be51f97SToby Isaac   Level: intermediate
5949be51f97SToby Isaac 
59520f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetAdjacencyDimension()`, `DMForestGetAdjacencyCodimension()`, `DMForestSetPartitionOverlap()`
5969be51f97SToby Isaac @*/
597d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetAdjacencyDimension(DM dm, PetscInt *adjDim)
598d71ae5a4SJacob Faibussowitsch {
599dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
600dd8e54a2SToby Isaac 
601dd8e54a2SToby Isaac   PetscFunctionBegin;
602dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
603dd8e54a2SToby Isaac   PetscValidIntPointer(adjDim, 2);
604dd8e54a2SToby Isaac   *adjDim = forest->adjDim;
6053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
606dd8e54a2SToby Isaac }
607dd8e54a2SToby Isaac 
6089be51f97SToby Isaac /*@
60920f4b53cSBarry Smith   DMForestGetAdjacencyCodimension - Like `DMForestGetAdjacencyDimension()`, but specified as a co-dimension (so that,
6109be51f97SToby Isaac   e.g., adjacency based on facets can be specified by codimension 1 in all cases)
6119be51f97SToby Isaac 
61220f4b53cSBarry Smith   Not Collective
6139be51f97SToby Isaac 
6149be51f97SToby Isaac   Input Parameter:
6159be51f97SToby Isaac . dm - the forest
6169be51f97SToby Isaac 
6179be51f97SToby Isaac   Output Parameter:
61820f4b53cSBarry Smith . adjCodim - default isthe dimension of the forest (see `DMGetDimension()`), since this is the codimension of vertices
6199be51f97SToby Isaac 
6209be51f97SToby Isaac   Level: intermediate
6219be51f97SToby Isaac 
62220f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetAdjacencyCodimension()`, `DMForestGetAdjacencyDimension()`
6239be51f97SToby Isaac @*/
624d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetAdjacencyCodimension(DM dm, PetscInt *adjCodim)
625d71ae5a4SJacob Faibussowitsch {
626dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
627dd8e54a2SToby Isaac   PetscInt   dim;
628dd8e54a2SToby Isaac 
629dd8e54a2SToby Isaac   PetscFunctionBegin;
630dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
631dd8e54a2SToby Isaac   PetscValidIntPointer(adjCodim, 2);
6329566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
633dd8e54a2SToby Isaac   *adjCodim = dim - forest->adjDim;
6343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
635dd8e54a2SToby Isaac }
636dd8e54a2SToby Isaac 
6379be51f97SToby Isaac /*@
6389be51f97SToby Isaac   DMForestSetPartitionOverlap - During the pre-setup phase, set the amount of cell-overlap present in parallel
6399be51f97SToby Isaac   partitions of a forest, with values > 0 indicating subdomains that are expanded by that many iterations of adding
6409be51f97SToby Isaac   adjacent cells
6419be51f97SToby Isaac 
64220f4b53cSBarry Smith   Logically Collective
6439be51f97SToby Isaac 
6449be51f97SToby Isaac   Input Parameters:
6459be51f97SToby Isaac + dm - the forest
6469be51f97SToby Isaac - overlap - default 0
6479be51f97SToby Isaac 
6489be51f97SToby Isaac   Level: intermediate
6499be51f97SToby Isaac 
65020f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetPartitionOverlap()`, `DMForestSetAdjacencyDimension()`, `DMForestSetAdjacencyCodimension()`
6519be51f97SToby Isaac @*/
652d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetPartitionOverlap(DM dm, PetscInt overlap)
653d71ae5a4SJacob Faibussowitsch {
654dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
655dd8e54a2SToby Isaac 
656dd8e54a2SToby Isaac   PetscFunctionBegin;
657dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
65828b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the overlap after setup");
65963a3b9bcSJacob Faibussowitsch   PetscCheck(overlap >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "overlap cannot be < 0: %" PetscInt_FMT, overlap);
660dd8e54a2SToby Isaac   forest->overlap = overlap;
6613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
662dd8e54a2SToby Isaac }
663dd8e54a2SToby Isaac 
6649be51f97SToby Isaac /*@
6659be51f97SToby Isaac   DMForestGetPartitionOverlap - Get the amount of cell-overlap present in parallel partitions of a forest, with values
6669be51f97SToby Isaac   > 0 indicating subdomains that are expanded by that many iterations of adding adjacent cells
6679be51f97SToby Isaac 
66820f4b53cSBarry Smith   Not Collective
6699be51f97SToby Isaac 
6709be51f97SToby Isaac   Input Parameter:
6719be51f97SToby Isaac . dm - the forest
6729be51f97SToby Isaac 
6739be51f97SToby Isaac   Output Parameter:
6749be51f97SToby Isaac . overlap - default 0
6759be51f97SToby Isaac 
6769be51f97SToby Isaac   Level: intermediate
6779be51f97SToby Isaac 
67820f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetPartitionOverlap()`, `DMForestSetAdjacencyDimension()`, `DMForestSetAdjacencyCodimension()`
6799be51f97SToby Isaac @*/
680d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetPartitionOverlap(DM dm, PetscInt *overlap)
681d71ae5a4SJacob Faibussowitsch {
682dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
683dd8e54a2SToby Isaac 
684dd8e54a2SToby Isaac   PetscFunctionBegin;
685dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
686dd8e54a2SToby Isaac   PetscValidIntPointer(overlap, 2);
687dd8e54a2SToby Isaac   *overlap = forest->overlap;
6883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
689dd8e54a2SToby Isaac }
690dd8e54a2SToby Isaac 
6919be51f97SToby Isaac /*@
6929be51f97SToby Isaac   DMForestSetMinimumRefinement - During the pre-setup phase, set the minimum level of refinement (relative to the base
69320f4b53cSBarry Smith   `DM`, see `DMForestGetBaseDM()`) allowed in the forest.  If the forest is being created by coarsening a previous forest
69420f4b53cSBarry Smith   (see `DMForestGetAdaptivityForest()`) this limits the amount of coarsening.
6959be51f97SToby Isaac 
69620f4b53cSBarry Smith   Logically Collective
6979be51f97SToby Isaac 
6989be51f97SToby Isaac   Input Parameters:
6999be51f97SToby Isaac + dm - the forest
70020f4b53cSBarry Smith - minRefinement - default `PETSC_DEFAULT` (interpreted by the subtype of `DMFOREST`)
7019be51f97SToby Isaac 
7029be51f97SToby Isaac   Level: intermediate
7039be51f97SToby Isaac 
70420f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetMinimumRefinement()`, `DMForestSetMaximumRefinement()`, `DMForestSetInitialRefinement()`, `DMForestGetBaseDM()`, `DMForestGetAdaptivityForest()`
7059be51f97SToby Isaac @*/
706d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetMinimumRefinement(DM dm, PetscInt minRefinement)
707d71ae5a4SJacob Faibussowitsch {
708dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
709dd8e54a2SToby Isaac 
710dd8e54a2SToby Isaac   PetscFunctionBegin;
711dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71228b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the minimum refinement after setup");
713dd8e54a2SToby Isaac   forest->minRefinement = minRefinement;
7143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
715dd8e54a2SToby Isaac }
716dd8e54a2SToby Isaac 
7179be51f97SToby Isaac /*@
71820f4b53cSBarry Smith   DMForestGetMinimumRefinement - Get the minimum level of refinement (relative to the base `DM`, see
71920f4b53cSBarry Smith   `DMForestGetBaseDM()`) allowed in the forest.  If the forest is being created by coarsening a previous forest (see
72020f4b53cSBarry Smith   `DMForestGetAdaptivityForest()`), this limits the amount of coarsening.
7219be51f97SToby Isaac 
72220f4b53cSBarry Smith   Not Collective
7239be51f97SToby Isaac 
7249be51f97SToby Isaac   Input Parameter:
7259be51f97SToby Isaac . dm - the forest
7269be51f97SToby Isaac 
7279be51f97SToby Isaac   Output Parameter:
72820f4b53cSBarry Smith . minRefinement - default `PETSC_DEFAULT` (interpreted by the subtype of `DMFOREST`)
7299be51f97SToby Isaac 
7309be51f97SToby Isaac   Level: intermediate
7319be51f97SToby Isaac 
73220f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetMinimumRefinement()`, `DMForestGetMaximumRefinement()`, `DMForestGetInitialRefinement()`, `DMForestGetBaseDM()`, `DMForestGetAdaptivityForest()`
7339be51f97SToby Isaac @*/
734d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetMinimumRefinement(DM dm, PetscInt *minRefinement)
735d71ae5a4SJacob Faibussowitsch {
736dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
737dd8e54a2SToby Isaac 
738dd8e54a2SToby Isaac   PetscFunctionBegin;
739dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
740dd8e54a2SToby Isaac   PetscValidIntPointer(minRefinement, 2);
741dd8e54a2SToby Isaac   *minRefinement = forest->minRefinement;
7423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
743dd8e54a2SToby Isaac }
744dd8e54a2SToby Isaac 
7459be51f97SToby Isaac /*@
7469be51f97SToby Isaac   DMForestSetInitialRefinement - During the pre-setup phase, set the initial level of refinement (relative to the base
74720f4b53cSBarry Smith   `DM`, see `DMForestGetBaseDM()`) allowed in the forest.
7489be51f97SToby Isaac 
74920f4b53cSBarry Smith   Logically Collective
7509be51f97SToby Isaac 
7519be51f97SToby Isaac   Input Parameters:
7529be51f97SToby Isaac + dm - the forest
75320f4b53cSBarry Smith - initefinement - default `PETSC_DEFAULT` (interpreted by the subtype of `DMFOREST`)
7549be51f97SToby Isaac 
7559be51f97SToby Isaac   Level: intermediate
7569be51f97SToby Isaac 
75720f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetMinimumRefinement()`, `DMForestSetMaximumRefinement()`, `DMForestGetBaseDM()`
7589be51f97SToby Isaac @*/
759d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetInitialRefinement(DM dm, PetscInt initRefinement)
760d71ae5a4SJacob Faibussowitsch {
76156ba9f64SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
76256ba9f64SToby Isaac 
76356ba9f64SToby Isaac   PetscFunctionBegin;
76456ba9f64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
76528b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the initial refinement after setup");
76656ba9f64SToby Isaac   forest->initRefinement = initRefinement;
7673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76856ba9f64SToby Isaac }
76956ba9f64SToby Isaac 
7709be51f97SToby Isaac /*@
77120f4b53cSBarry Smith   DMForestGetInitialRefinement - Get the initial level of refinement (relative to the base `DM`, see
77220f4b53cSBarry Smith   `DMForestGetBaseDM()`) allowed in the forest.
7739be51f97SToby Isaac 
77420f4b53cSBarry Smith   Not Collective
7759be51f97SToby Isaac 
7769be51f97SToby Isaac   Input Parameter:
7779be51f97SToby Isaac . dm - the forest
7789be51f97SToby Isaac 
77901d2d390SJose E. Roman   Output Parameter:
78020f4b53cSBarry Smith . initRefinement - default `PETSC_DEFAULT` (interpreted by the subtype of `DMFOREST`)
7819be51f97SToby Isaac 
7829be51f97SToby Isaac   Level: intermediate
7839be51f97SToby Isaac 
78420f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`,  `DMForestSetMinimumRefinement()`, `DMForestSetMaximumRefinement()`, `DMForestGetBaseDM()`
7859be51f97SToby Isaac @*/
786d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetInitialRefinement(DM dm, PetscInt *initRefinement)
787d71ae5a4SJacob Faibussowitsch {
78856ba9f64SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
78956ba9f64SToby Isaac 
79056ba9f64SToby Isaac   PetscFunctionBegin;
79156ba9f64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
79256ba9f64SToby Isaac   PetscValidIntPointer(initRefinement, 2);
79356ba9f64SToby Isaac   *initRefinement = forest->initRefinement;
7943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
79556ba9f64SToby Isaac }
79656ba9f64SToby Isaac 
7979be51f97SToby Isaac /*@
7989be51f97SToby Isaac   DMForestSetMaximumRefinement - During the pre-setup phase, set the maximum level of refinement (relative to the base
79920f4b53cSBarry Smith   `DM`, see `DMForestGetBaseDM()`) allowed in the forest.  If the forest is being created by refining a previous forest
80020f4b53cSBarry Smith   (see `DMForestGetAdaptivityForest()`), this limits the amount of refinement.
8019be51f97SToby Isaac 
80220f4b53cSBarry Smith   Logically Collective
8039be51f97SToby Isaac 
8049be51f97SToby Isaac   Input Parameters:
8059be51f97SToby Isaac + dm - the forest
80620f4b53cSBarry Smith - maxRefinement - default `PETSC_DEFAULT` (interpreted by the subtype of `DMFOREST`)
8079be51f97SToby Isaac 
8089be51f97SToby Isaac   Level: intermediate
8099be51f97SToby Isaac 
81020f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetMinimumRefinement()`, `DMForestSetMaximumRefinement()`, `DMForestSetInitialRefinement()`, `DMForestGetBaseDM()`, `DMForestGetAdaptivityDM()`
8119be51f97SToby Isaac @*/
812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetMaximumRefinement(DM dm, PetscInt maxRefinement)
813d71ae5a4SJacob Faibussowitsch {
814dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
815dd8e54a2SToby Isaac 
816dd8e54a2SToby Isaac   PetscFunctionBegin;
817dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
81828b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the maximum refinement after setup");
819c7eeac06SToby Isaac   forest->maxRefinement = maxRefinement;
8203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
821dd8e54a2SToby Isaac }
822dd8e54a2SToby Isaac 
8239be51f97SToby Isaac /*@
82420f4b53cSBarry Smith   DMForestGetMaximumRefinement - Get the maximum level of refinement (relative to the base `DM`, see
82520f4b53cSBarry Smith   `DMForestGetBaseDM()`) allowed in the forest.  If the forest is being created by refining a previous forest (see
826*f826b5fcSPierre Jolivet   `DMForestGetAdaptivityForest()`), this limits the amount of refinement.
8279be51f97SToby Isaac 
82820f4b53cSBarry Smith   Not Collective
8299be51f97SToby Isaac 
8309be51f97SToby Isaac   Input Parameter:
8319be51f97SToby Isaac . dm - the forest
8329be51f97SToby Isaac 
8339be51f97SToby Isaac   Output Parameter:
83420f4b53cSBarry Smith . maxRefinement - default `PETSC_DEFAULT` (interpreted by the subtype of `DMFOREST`)
8359be51f97SToby Isaac 
8369be51f97SToby Isaac   Level: intermediate
8379be51f97SToby Isaac 
83820f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetMaximumRefinement()`, `DMForestGetMinimumRefinement()`, `DMForestGetInitialRefinement()`, `DMForestGetBaseDM()`, `DMForestGetAdaptivityForest()`
8399be51f97SToby Isaac @*/
840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetMaximumRefinement(DM dm, PetscInt *maxRefinement)
841d71ae5a4SJacob Faibussowitsch {
842dd8e54a2SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
843dd8e54a2SToby Isaac 
844dd8e54a2SToby Isaac   PetscFunctionBegin;
845dd8e54a2SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
846c7eeac06SToby Isaac   PetscValidIntPointer(maxRefinement, 2);
847c7eeac06SToby Isaac   *maxRefinement = forest->maxRefinement;
8483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
849dd8e54a2SToby Isaac }
850c7eeac06SToby Isaac 
8519be51f97SToby Isaac /*@C
8529be51f97SToby Isaac   DMForestSetAdaptivityStrategy - During the pre-setup phase, set the strategy for combining adaptivity labels from multiple processes.
8539be51f97SToby Isaac 
85420f4b53cSBarry Smith   Logically Collective
8559be51f97SToby Isaac 
8569be51f97SToby Isaac   Input Parameters:
8579be51f97SToby Isaac + dm - the forest
85820f4b53cSBarry Smith - adaptStrategy - default `DMFORESTADAPTALL`
8599be51f97SToby Isaac 
8609be51f97SToby Isaac   Level: advanced
8619be51f97SToby Isaac 
86220f4b53cSBarry Smith   Notes:
86320f4b53cSBarry Smith   Subtypes of `DMFOREST` may define their own strategies.  Two default strategies are `DMFORESTADAPTALL`, which indicates that all processes must agree
86420f4b53cSBarry Smith   for a refinement/coarsening flag to be valid, and `DMFORESTADAPTANY`, which indicates that only one process needs to
86520f4b53cSBarry Smith   specify refinement/coarsening.
86620f4b53cSBarry Smith 
86720f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetAdaptivityStrategy()`, `DMFORESTADAPTALL`, `DMFORESTADAPTANY`
8689be51f97SToby Isaac @*/
869d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetAdaptivityStrategy(DM dm, DMForestAdaptivityStrategy adaptStrategy)
870d71ae5a4SJacob Faibussowitsch {
871c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
872c7eeac06SToby Isaac 
873c7eeac06SToby Isaac   PetscFunctionBegin;
874c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8759566063dSJacob Faibussowitsch   PetscCall(PetscFree(forest->adaptStrategy));
8769566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy((const char *)adaptStrategy, (char **)&forest->adaptStrategy));
8773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
878c7eeac06SToby Isaac }
879c7eeac06SToby Isaac 
8809be51f97SToby Isaac /*@C
88120f4b53cSBarry Smith   DMForestSetAdaptivityStrategy - Get the strategy for combining adaptivity labels from multiple processes.
8829be51f97SToby Isaac 
88320f4b53cSBarry Smith   Not Collective
8849be51f97SToby Isaac 
8859be51f97SToby Isaac   Input Parameter:
8869be51f97SToby Isaac . dm - the forest
8879be51f97SToby Isaac 
8889be51f97SToby Isaac   Output Parameter:
88920f4b53cSBarry Smith . adaptStrategy - the adaptivity strategy (default `DMFORESTADAPTALL`)
8909be51f97SToby Isaac 
8919be51f97SToby Isaac   Level: advanced
8929be51f97SToby Isaac 
89320f4b53cSBarry Smith   Note:
89420f4b53cSBarry Smith   Subtypes
89520f4b53cSBarry Smith   of `DMFOREST` may define their own strategies.  Two default strategies are `DMFORESTADAPTALL`, which indicates that all
89620f4b53cSBarry Smith   processes must agree for a refinement/coarsening flag to be valid, and `DMFORESTADAPTANY`, which indicates that only
89720f4b53cSBarry Smith   one process needs to specify refinement/coarsening.
89820f4b53cSBarry Smith 
89920f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMFORESTADAPTALL`, `DMFORESTADAPTANY`, `DMForestSetAdaptivityStrategy()`
9009be51f97SToby Isaac @*/
901d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetAdaptivityStrategy(DM dm, DMForestAdaptivityStrategy *adaptStrategy)
902d71ae5a4SJacob Faibussowitsch {
903c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
904c7eeac06SToby Isaac 
905c7eeac06SToby Isaac   PetscFunctionBegin;
906c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
907c7eeac06SToby Isaac   PetscValidPointer(adaptStrategy, 2);
908c7eeac06SToby Isaac   *adaptStrategy = forest->adaptStrategy;
9093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
910c7eeac06SToby Isaac }
911c7eeac06SToby Isaac 
9122a133e43SToby Isaac /*@
9132a133e43SToby Isaac   DMForestGetAdaptivitySuccess - Return whether the requested adaptation (refinement, coarsening, repartitioning,
91420f4b53cSBarry Smith   etc.) was successful.
9152a133e43SToby Isaac 
91620f4b53cSBarry Smith   Collective
9172a133e43SToby Isaac 
9182a133e43SToby Isaac   Input Parameter:
9192a133e43SToby Isaac . dm - the post-adaptation forest
9202a133e43SToby Isaac 
9212a133e43SToby Isaac   Output Parameter:
92220f4b53cSBarry Smith . success - `PETSC_TRUE` if the post-adaptation forest is different from the pre-adaptation forest.
9232a133e43SToby Isaac 
9242a133e43SToby Isaac   Level: intermediate
9252a133e43SToby Isaac 
92620f4b53cSBarry Smith   Notes:
92720f4b53cSBarry Smith   `PETSC_FALSE` indicates that the post-adaptation forest is the same as the pre-adpatation
92820f4b53cSBarry Smith   forest.  A requested adaptation may have been unsuccessful if, for example, the requested refinement would have
92920f4b53cSBarry Smith   exceeded the maximum refinement level.
93020f4b53cSBarry Smith 
93120f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`
9322a133e43SToby Isaac @*/
933d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetAdaptivitySuccess(DM dm, PetscBool *success)
934d71ae5a4SJacob Faibussowitsch {
9352a133e43SToby Isaac   DM_Forest *forest;
9362a133e43SToby Isaac 
9372a133e43SToby Isaac   PetscFunctionBegin;
9382a133e43SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
93928b400f6SJacob Faibussowitsch   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DMSetUp() has not been called yet.");
9402a133e43SToby Isaac   forest = (DM_Forest *)dm->data;
9419566063dSJacob Faibussowitsch   PetscCall((forest->getadaptivitysuccess)(dm, success));
9423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9432a133e43SToby Isaac }
9442a133e43SToby Isaac 
945bf9b5d84SToby Isaac /*@
94620f4b53cSBarry Smith   DMForestSetComputeAdaptivitySF - During the pre-setup phase, set whether transfer `PetscSF`s should be computed
94720f4b53cSBarry Smith   relating the cells of the pre-adaptation forest to the post-adaptiation forest.
948bf9b5d84SToby Isaac 
94920f4b53cSBarry Smith   Logically Collective
950bf9b5d84SToby Isaac 
951bf9b5d84SToby Isaac   Input Parameters:
952bf9b5d84SToby Isaac + dm - the post-adaptation forest
95320f4b53cSBarry Smith - computeSF - default `PETSC_TRUE`
954bf9b5d84SToby Isaac 
955bf9b5d84SToby Isaac   Level: advanced
956bf9b5d84SToby Isaac 
95720f4b53cSBarry Smith   Note:
95820f4b53cSBarry Smith   After `DMSetUp()` is called, the transfer `PetscSF`s can be accessed with `DMForestGetAdaptivitySF()`.
95920f4b53cSBarry Smith 
96020f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetComputeAdaptivitySF()`, `DMForestGetAdaptivitySF()`
961bf9b5d84SToby Isaac @*/
962d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetComputeAdaptivitySF(DM dm, PetscBool computeSF)
963d71ae5a4SJacob Faibussowitsch {
964bf9b5d84SToby Isaac   DM_Forest *forest;
965bf9b5d84SToby Isaac 
966bf9b5d84SToby Isaac   PetscFunctionBegin;
967bf9b5d84SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
96828b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot compute adaptivity PetscSFs after setup is called");
969bf9b5d84SToby Isaac   forest                 = (DM_Forest *)dm->data;
970bf9b5d84SToby Isaac   forest->computeAdaptSF = computeSF;
9713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
972bf9b5d84SToby Isaac }
973bf9b5d84SToby Isaac 
974d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestTransferVec(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut, PetscBool useBCs, PetscReal time)
975d71ae5a4SJacob Faibussowitsch {
97680b27e07SToby Isaac   DM_Forest *forest;
97780b27e07SToby Isaac 
97880b27e07SToby Isaac   PetscFunctionBegin;
97980b27e07SToby Isaac   PetscValidHeaderSpecific(dmIn, DM_CLASSID, 1);
98080b27e07SToby Isaac   PetscValidHeaderSpecific(vecIn, VEC_CLASSID, 2);
98180b27e07SToby Isaac   PetscValidHeaderSpecific(dmOut, DM_CLASSID, 3);
98280b27e07SToby Isaac   PetscValidHeaderSpecific(vecOut, VEC_CLASSID, 4);
98380b27e07SToby Isaac   forest = (DM_Forest *)dmIn->data;
98428b400f6SJacob Faibussowitsch   PetscCheck(forest->transfervec, PetscObjectComm((PetscObject)dmIn), PETSC_ERR_SUP, "DMForestTransferVec() not implemented");
9859566063dSJacob Faibussowitsch   PetscCall((forest->transfervec)(dmIn, vecIn, dmOut, vecOut, useBCs, time));
9863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
98780b27e07SToby Isaac }
98880b27e07SToby Isaac 
989d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestTransferVecFromBase(DM dm, Vec vecIn, Vec vecOut)
990d71ae5a4SJacob Faibussowitsch {
991ac34a06fSStefano Zampini   DM_Forest *forest;
992ac34a06fSStefano Zampini 
993ac34a06fSStefano Zampini   PetscFunctionBegin;
994ac34a06fSStefano Zampini   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
995ac34a06fSStefano Zampini   PetscValidHeaderSpecific(vecIn, VEC_CLASSID, 2);
996ac34a06fSStefano Zampini   PetscValidHeaderSpecific(vecOut, VEC_CLASSID, 3);
997ac34a06fSStefano Zampini   forest = (DM_Forest *)dm->data;
99828b400f6SJacob Faibussowitsch   PetscCheck(forest->transfervecfrombase, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "DMForestTransferVecFromBase() not implemented");
9999566063dSJacob Faibussowitsch   PetscCall((forest->transfervecfrombase)(dm, vecIn, vecOut));
10003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1001ac34a06fSStefano Zampini }
1002ac34a06fSStefano Zampini 
1003bf9b5d84SToby Isaac /*@
100420f4b53cSBarry Smith   DMForestGetComputeAdaptivitySF - Get whether transfer `PetscSF`s should be computed relating the cells of the
100520f4b53cSBarry Smith   pre-adaptation forest to the post-adaptiation forest.  After `DMSetUp()` is called, these transfer PetscSFs can be
100620f4b53cSBarry Smith   accessed with `DMForestGetAdaptivitySF()`.
1007bf9b5d84SToby Isaac 
100820f4b53cSBarry Smith   Not Collective
1009bf9b5d84SToby Isaac 
1010bf9b5d84SToby Isaac   Input Parameter:
1011bf9b5d84SToby Isaac . dm - the post-adaptation forest
1012bf9b5d84SToby Isaac 
1013bf9b5d84SToby Isaac   Output Parameter:
101420f4b53cSBarry Smith . computeSF - default `PETSC_TRUE`
1015bf9b5d84SToby Isaac 
1016bf9b5d84SToby Isaac   Level: advanced
1017bf9b5d84SToby Isaac 
101820f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetComputeAdaptivitySF()`, `DMForestGetAdaptivitySF()`
1019bf9b5d84SToby Isaac @*/
1020d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetComputeAdaptivitySF(DM dm, PetscBool *computeSF)
1021d71ae5a4SJacob Faibussowitsch {
1022bf9b5d84SToby Isaac   DM_Forest *forest;
1023bf9b5d84SToby Isaac 
1024bf9b5d84SToby Isaac   PetscFunctionBegin;
1025bf9b5d84SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1026bf9b5d84SToby Isaac   forest     = (DM_Forest *)dm->data;
1027bf9b5d84SToby Isaac   *computeSF = forest->computeAdaptSF;
10283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1029bf9b5d84SToby Isaac }
1030bf9b5d84SToby Isaac 
1031bf9b5d84SToby Isaac /*@
103220f4b53cSBarry Smith   DMForestGetAdaptivitySF - Get `PetscSF`s that relate the pre-adaptation forest to the post-adaptation forest.
1033bf9b5d84SToby Isaac   Adaptation can be any combination of refinement, coarsening, repartition, and change of overlap, so there may be
1034bf9b5d84SToby Isaac   some cells of the pre-adaptation that are parents of post-adaptation cells, and vice versa.  Therefore there are two
103520f4b53cSBarry Smith   `PetscSF`s: one that relates pre-adaptation coarse cells to post-adaptation fine cells, and one that relates
1036bf9b5d84SToby Isaac   pre-adaptation fine cells to post-adaptation coarse cells.
1037bf9b5d84SToby Isaac 
103820f4b53cSBarry Smith   Not Collective
1039bf9b5d84SToby Isaac 
1040bf9b5d84SToby Isaac   Input Parameter:
104120f4b53cSBarry Smith .  dm - the post-adaptation forest
1042bf9b5d84SToby Isaac 
104320f4b53cSBarry Smith   Output Parameters:
104420f4b53cSBarry Smith +  preCoarseToFine - pre-adaptation coarse cells to post-adaptation fine cells: BCast goes from pre- to post-
104520f4b53cSBarry Smith -  coarseToPreFine - post-adaptation coarse cells to pre-adaptation fine cells: BCast goes from post- to pre-
1046bf9b5d84SToby Isaac 
1047bf9b5d84SToby Isaac   Level: advanced
1048bf9b5d84SToby Isaac 
104920f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetComputeAdaptivitySF()`, `DMForestSetComputeAdaptivitySF()`
1050bf9b5d84SToby Isaac @*/
1051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetAdaptivitySF(DM dm, PetscSF *preCoarseToFine, PetscSF *coarseToPreFine)
1052d71ae5a4SJacob Faibussowitsch {
1053bf9b5d84SToby Isaac   DM_Forest *forest;
1054bf9b5d84SToby Isaac 
1055bf9b5d84SToby Isaac   PetscFunctionBegin;
1056bf9b5d84SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10579566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
1058bf9b5d84SToby Isaac   forest = (DM_Forest *)dm->data;
1059f885a11aSToby Isaac   if (preCoarseToFine) *preCoarseToFine = forest->preCoarseToFine;
1060f885a11aSToby Isaac   if (coarseToPreFine) *coarseToPreFine = forest->coarseToPreFine;
10613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1062bf9b5d84SToby Isaac }
1063bf9b5d84SToby Isaac 
10649be51f97SToby Isaac /*@
10659be51f97SToby Isaac   DMForestSetGradeFactor - During the pre-setup phase, set the desired amount of grading in the mesh, e.g. give 2 to
106620f4b53cSBarry Smith   indicate that the diameter of neighboring cells should differ by at most a factor of 2.  Subtypes of `DMFOREST` may
10679be51f97SToby Isaac   only support one particular choice of grading factor.
10689be51f97SToby Isaac 
106920f4b53cSBarry Smith   Logically Collective
10709be51f97SToby Isaac 
10719be51f97SToby Isaac   Input Parameters:
10729be51f97SToby Isaac + dm - the forest
10739be51f97SToby Isaac - grade - the grading factor
10749be51f97SToby Isaac 
10759be51f97SToby Isaac   Level: advanced
10769be51f97SToby Isaac 
107720f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetGradeFactor()`
10789be51f97SToby Isaac @*/
1079d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetGradeFactor(DM dm, PetscInt grade)
1080d71ae5a4SJacob Faibussowitsch {
1081c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1082c7eeac06SToby Isaac 
1083c7eeac06SToby Isaac   PetscFunctionBegin;
1084c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
108528b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the grade factor after setup");
1086c7eeac06SToby Isaac   forest->gradeFactor = grade;
10873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1088c7eeac06SToby Isaac }
1089c7eeac06SToby Isaac 
10909be51f97SToby Isaac /*@
10919be51f97SToby Isaac   DMForestGetGradeFactor - Get the desired amount of grading in the mesh, e.g. give 2 to indicate that the diameter of
109220f4b53cSBarry Smith   neighboring cells should differ by at most a factor of 2.  Subtypes of `DMFOREST` may only support one particular
10939be51f97SToby Isaac   choice of grading factor.
10949be51f97SToby Isaac 
109520f4b53cSBarry Smith   Not Collective
10969be51f97SToby Isaac 
10979be51f97SToby Isaac   Input Parameter:
10989be51f97SToby Isaac . dm - the forest
10999be51f97SToby Isaac 
11009be51f97SToby Isaac   Output Parameter:
11019be51f97SToby Isaac . grade - the grading factor
11029be51f97SToby Isaac 
11039be51f97SToby Isaac   Level: advanced
11049be51f97SToby Isaac 
110520f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetGradeFactor()`
11069be51f97SToby Isaac @*/
1107d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetGradeFactor(DM dm, PetscInt *grade)
1108d71ae5a4SJacob Faibussowitsch {
1109c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1110c7eeac06SToby Isaac 
1111c7eeac06SToby Isaac   PetscFunctionBegin;
1112c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1113c7eeac06SToby Isaac   PetscValidIntPointer(grade, 2);
1114c7eeac06SToby Isaac   *grade = forest->gradeFactor;
11153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1116c7eeac06SToby Isaac }
1117c7eeac06SToby Isaac 
11189be51f97SToby Isaac /*@
11199be51f97SToby Isaac   DMForestSetCellWeightFactor - During the pre-setup phase, set the factor by which the level of refinement changes
112020f4b53cSBarry Smith   the cell weight (see `DMForestSetCellWeights()`) when calculating partitions.  The final weight of a cell will be
11219be51f97SToby Isaac   (cellWeight) * (weightFactor^refinementLevel).  A factor of 1 indicates that the weight of a cell does not depend on
11229be51f97SToby Isaac   its level; a factor of 2, for example, might be appropriate for sub-cycling time-stepping methods, when the
11239be51f97SToby Isaac   computation associated with a cell is multiplied by a factor of 2 for each additional level of refinement.
11249be51f97SToby Isaac 
112520f4b53cSBarry Smith   Logically Collective
11269be51f97SToby Isaac 
11279be51f97SToby Isaac   Input Parameters:
11289be51f97SToby Isaac + dm - the forest
11299be51f97SToby Isaac - weightsFactors - default 1.
11309be51f97SToby Isaac 
11319be51f97SToby Isaac   Level: advanced
11329be51f97SToby Isaac 
113320f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetCellWeightFactor()`, `DMForestSetCellWeights()`
11349be51f97SToby Isaac @*/
1135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetCellWeightFactor(DM dm, PetscReal weightsFactor)
1136d71ae5a4SJacob Faibussowitsch {
1137c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1138c7eeac06SToby Isaac 
1139c7eeac06SToby Isaac   PetscFunctionBegin;
1140c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
114128b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the weights factor after setup");
1142c7eeac06SToby Isaac   forest->weightsFactor = weightsFactor;
11433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1144c7eeac06SToby Isaac }
1145c7eeac06SToby Isaac 
11469be51f97SToby Isaac /*@
11479be51f97SToby Isaac   DMForestGetCellWeightFactor - Get the factor by which the level of refinement changes the cell weight (see
114820f4b53cSBarry Smith   `DMForestSetCellWeights()`) when calculating partitions.  The final weight of a cell will be (cellWeight) *
11499be51f97SToby Isaac   (weightFactor^refinementLevel).  A factor of 1 indicates that the weight of a cell does not depend on its level; a
11509be51f97SToby Isaac   factor of 2, for example, might be appropriate for sub-cycling time-stepping methods, when the computation
11519be51f97SToby Isaac   associated with a cell is multiplied by a factor of 2 for each additional level of refinement.
11529be51f97SToby Isaac 
115320f4b53cSBarry Smith   Not Collective
11549be51f97SToby Isaac 
11559be51f97SToby Isaac   Input Parameter:
11569be51f97SToby Isaac . dm - the forest
11579be51f97SToby Isaac 
11589be51f97SToby Isaac   Output Parameter:
11599be51f97SToby Isaac . weightsFactors - default 1.
11609be51f97SToby Isaac 
11619be51f97SToby Isaac   Level: advanced
11629be51f97SToby Isaac 
116320f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetCellWeightFactor()`, `DMForestSetCellWeights()`
11649be51f97SToby Isaac @*/
1165d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetCellWeightFactor(DM dm, PetscReal *weightsFactor)
1166d71ae5a4SJacob Faibussowitsch {
1167c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1168c7eeac06SToby Isaac 
1169c7eeac06SToby Isaac   PetscFunctionBegin;
1170c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1171c7eeac06SToby Isaac   PetscValidRealPointer(weightsFactor, 2);
1172c7eeac06SToby Isaac   *weightsFactor = forest->weightsFactor;
11733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1174c7eeac06SToby Isaac }
1175c7eeac06SToby Isaac 
11769be51f97SToby Isaac /*@
11779be51f97SToby Isaac   DMForestGetCellChart - After the setup phase, get the local half-open interval of the chart of cells on this process
11789be51f97SToby Isaac 
117920f4b53cSBarry Smith   Not Collective
11809be51f97SToby Isaac 
11819be51f97SToby Isaac   Input Parameter:
11829be51f97SToby Isaac . dm - the forest
11839be51f97SToby Isaac 
11849be51f97SToby Isaac   Output Parameters:
11859be51f97SToby Isaac + cStart - the first cell on this process
11869be51f97SToby Isaac - cEnd - one after the final cell on this process
11879be51f97SToby Isaac 
11881a244344SSatish Balay   Level: intermediate
11899be51f97SToby Isaac 
119020f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetCellSF()`
11919be51f97SToby Isaac @*/
1192d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetCellChart(DM dm, PetscInt *cStart, PetscInt *cEnd)
1193d71ae5a4SJacob Faibussowitsch {
1194c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1195c7eeac06SToby Isaac 
1196c7eeac06SToby Isaac   PetscFunctionBegin;
1197c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1198c7eeac06SToby Isaac   PetscValidIntPointer(cStart, 2);
1199064a246eSJacob Faibussowitsch   PetscValidIntPointer(cEnd, 3);
120048a46eb9SPierre Jolivet   if (((forest->cStart == PETSC_DETERMINE) || (forest->cEnd == PETSC_DETERMINE)) && forest->createcellchart) PetscCall(forest->createcellchart(dm, &forest->cStart, &forest->cEnd));
1201c7eeac06SToby Isaac   *cStart = forest->cStart;
1202c7eeac06SToby Isaac   *cEnd   = forest->cEnd;
12033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1204c7eeac06SToby Isaac }
1205c7eeac06SToby Isaac 
12069be51f97SToby Isaac /*@
120720f4b53cSBarry Smith   DMForestGetCellSF - After the setup phase, get the `PetscSF` for overlapping cells between processes
12089be51f97SToby Isaac 
120920f4b53cSBarry Smith   Not Collective
12109be51f97SToby Isaac 
12119be51f97SToby Isaac   Input Parameter:
12129be51f97SToby Isaac . dm - the forest
12139be51f97SToby Isaac 
12149be51f97SToby Isaac   Output Parameter:
121520f4b53cSBarry Smith . cellSF - the `PetscSF`
12169be51f97SToby Isaac 
12171a244344SSatish Balay   Level: intermediate
12189be51f97SToby Isaac 
121920f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetCellChart()`
12209be51f97SToby Isaac @*/
1221d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetCellSF(DM dm, PetscSF *cellSF)
1222d71ae5a4SJacob Faibussowitsch {
1223c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1224c7eeac06SToby Isaac 
1225c7eeac06SToby Isaac   PetscFunctionBegin;
1226c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1227c7eeac06SToby Isaac   PetscValidPointer(cellSF, 2);
122848a46eb9SPierre Jolivet   if ((!forest->cellSF) && forest->createcellsf) PetscCall(forest->createcellsf(dm, &forest->cellSF));
1229c7eeac06SToby Isaac   *cellSF = forest->cellSF;
12303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1231c7eeac06SToby Isaac }
1232c7eeac06SToby Isaac 
12339be51f97SToby Isaac /*@C
12349be51f97SToby Isaac   DMForestSetAdaptivityLabel - During the pre-setup phase, set the label of the pre-adaptation forest (see
123520f4b53cSBarry Smith   `DMForestGetAdaptivityForest()`) that holds the adaptation flags (refinement, coarsening, or some combination).  The
123620f4b53cSBarry Smith   interpretation of the label values is up to the subtype of `DMFOREST`, but `DM_ADAPT_DETERMINE`, `DM_ADAPT_KEEP`,
123720f4b53cSBarry Smith   `DM_ADAPT_REFINE`, and `DM_ADAPT_COARSEN` have been reserved as choices that should be accepted by all subtypes.
12389be51f97SToby Isaac 
123920f4b53cSBarry Smith   Logically Collective
12409be51f97SToby Isaac 
12419be51f97SToby Isaac   Input Parameters:
12429be51f97SToby Isaac - dm - the forest
1243a1b0c543SToby Isaac + adaptLabel - the label in the pre-adaptation forest
12449be51f97SToby Isaac 
12459be51f97SToby Isaac   Level: intermediate
12469be51f97SToby Isaac 
124720f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetAdaptivityLabel()`
12489be51f97SToby Isaac @*/
1249d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetAdaptivityLabel(DM dm, DMLabel adaptLabel)
1250d71ae5a4SJacob Faibussowitsch {
1251c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1252c7eeac06SToby Isaac 
1253c7eeac06SToby Isaac   PetscFunctionBegin;
1254c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12551fd50544SStefano Zampini   if (adaptLabel) PetscValidHeaderSpecific(adaptLabel, DMLABEL_CLASSID, 2);
12569566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)adaptLabel));
12579566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&forest->adaptLabel));
12581fd50544SStefano Zampini   forest->adaptLabel = adaptLabel;
12593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1260c7eeac06SToby Isaac }
1261c7eeac06SToby Isaac 
12629be51f97SToby Isaac /*@C
126320f4b53cSBarry Smith   DMForestGetAdaptivityLabel - Get the label of the pre-adaptation forest (see `DMForestGetAdaptivityForest()`) that
12649be51f97SToby Isaac   holds the adaptation flags (refinement, coarsening, or some combination).  The interpretation of the label values is
126520f4b53cSBarry Smith   up to the subtype of `DMFOREST`, but `DM_ADAPT_DETERMINE`, `DM_ADAPT_KEEP`, `DM_ADAPT_REFINE`, and `DM_ADAPT_COARSEN` have
1266cd3c525cSToby Isaac   been reserved as choices that should be accepted by all subtypes.
12679be51f97SToby Isaac 
126820f4b53cSBarry Smith   Not Collective
12699be51f97SToby Isaac 
12709be51f97SToby Isaac   Input Parameter:
12719be51f97SToby Isaac . dm - the forest
12729be51f97SToby Isaac 
12739be51f97SToby Isaac   Output Parameter:
12749be51f97SToby Isaac . adaptLabel - the name of the label in the pre-adaptation forest
12759be51f97SToby Isaac 
12769be51f97SToby Isaac   Level: intermediate
12779be51f97SToby Isaac 
127820f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetAdaptivityLabel()`
12799be51f97SToby Isaac @*/
1280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetAdaptivityLabel(DM dm, DMLabel *adaptLabel)
1281d71ae5a4SJacob Faibussowitsch {
1282c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1283c7eeac06SToby Isaac 
1284c7eeac06SToby Isaac   PetscFunctionBegin;
1285c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1286ba936b91SToby Isaac   *adaptLabel = forest->adaptLabel;
12873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1288c7eeac06SToby Isaac }
1289c7eeac06SToby Isaac 
12909be51f97SToby Isaac /*@
129120f4b53cSBarry Smith   DMForestSetCellWeights - Set the weights assigned to each of the cells (see `DMForestGetCellChart()`) of the current
129220f4b53cSBarry Smith   process: weights are used to determine parallel partitioning.
12939be51f97SToby Isaac 
129420f4b53cSBarry Smith   Logically Collective
12959be51f97SToby Isaac 
12969be51f97SToby Isaac   Input Parameters:
12979be51f97SToby Isaac + dm - the forest
129820f4b53cSBarry Smith . weights - the array of weights (see `DMForestSetWeightCapacity()`) for all cells, or `NULL` to indicate each cell has weight 1.
12999be51f97SToby Isaac - copyMode - how weights should reference weights
13009be51f97SToby Isaac 
13019be51f97SToby Isaac   Level: advanced
13029be51f97SToby Isaac 
130320f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestGetCellWeights()`, `DMForestSetWeightCapacity()`
13049be51f97SToby Isaac @*/
1305d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetCellWeights(DM dm, PetscReal weights[], PetscCopyMode copyMode)
1306d71ae5a4SJacob Faibussowitsch {
1307c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1308c7eeac06SToby Isaac   PetscInt   cStart, cEnd;
1309c7eeac06SToby Isaac 
1310c7eeac06SToby Isaac   PetscFunctionBegin;
1311c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13129566063dSJacob Faibussowitsch   PetscCall(DMForestGetCellChart(dm, &cStart, &cEnd));
131363a3b9bcSJacob Faibussowitsch   PetscCheck(cEnd >= cStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "cell chart [%" PetscInt_FMT ",%" PetscInt_FMT ") is not valid", cStart, cEnd);
1314c7eeac06SToby Isaac   if (copyMode == PETSC_COPY_VALUES) {
131548a46eb9SPierre Jolivet     if (forest->cellWeightsCopyMode != PETSC_OWN_POINTER || forest->cellWeights == weights) PetscCall(PetscMalloc1(cEnd - cStart, &forest->cellWeights));
13169566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(forest->cellWeights, weights, cEnd - cStart));
1317c7eeac06SToby Isaac     forest->cellWeightsCopyMode = PETSC_OWN_POINTER;
13183ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1319c7eeac06SToby Isaac   }
132048a46eb9SPierre Jolivet   if (forest->cellWeightsCopyMode == PETSC_OWN_POINTER) PetscCall(PetscFree(forest->cellWeights));
1321c7eeac06SToby Isaac   forest->cellWeights         = weights;
1322c7eeac06SToby Isaac   forest->cellWeightsCopyMode = copyMode;
13233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1324c7eeac06SToby Isaac }
1325c7eeac06SToby Isaac 
13269be51f97SToby Isaac /*@
132720f4b53cSBarry Smith   DMForestGetCellWeights - Get the weights assigned to each of the cells (see `DMForestGetCellChart()`) of the current
132820f4b53cSBarry Smith   process: weights are used to determine parallel partitioning.
13299be51f97SToby Isaac 
133020f4b53cSBarry Smith   Not Collective
13319be51f97SToby Isaac 
13329be51f97SToby Isaac   Input Parameter:
13339be51f97SToby Isaac . dm - the forest
13349be51f97SToby Isaac 
13359be51f97SToby Isaac   Output Parameter:
133620f4b53cSBarry Smith . weights - the array of weights for all cells, or `NULL` to indicate each cell has weight 1.
13379be51f97SToby Isaac 
13389be51f97SToby Isaac   Level: advanced
13399be51f97SToby Isaac 
134020f4b53cSBarry Smith .seealso: `DM`, `DMFOREST`, `DMForestSetCellWeights()`, `DMForestSetWeightCapacity()`
13419be51f97SToby Isaac @*/
1342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetCellWeights(DM dm, PetscReal **weights)
1343d71ae5a4SJacob Faibussowitsch {
1344c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1345c7eeac06SToby Isaac 
1346c7eeac06SToby Isaac   PetscFunctionBegin;
1347c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1348c7eeac06SToby Isaac   PetscValidPointer(weights, 2);
1349c7eeac06SToby Isaac   *weights = forest->cellWeights;
13503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1351c7eeac06SToby Isaac }
1352c7eeac06SToby Isaac 
13539be51f97SToby Isaac /*@
13549be51f97SToby Isaac   DMForestSetWeightCapacity - During the pre-setup phase, set the capacity of the current process when repartitioning
135520f4b53cSBarry Smith   a pre-adaptation forest (see `DMForestGetAdaptivityForest()`).  After partitioning, the ratio of the weight of each
13569be51f97SToby Isaac   process's cells to the process's capacity will be roughly equal for all processes.  A capacity of 0 indicates that
13579be51f97SToby Isaac   the current process should not have any cells after repartitioning.
13589be51f97SToby Isaac 
135920f4b53cSBarry Smith   Logically Collective
13609be51f97SToby Isaac 
13619be51f97SToby Isaac   Input parameters:
13629be51f97SToby Isaac + dm - the forest
13639be51f97SToby Isaac - capacity - this process's capacity
13649be51f97SToby Isaac 
13659be51f97SToby Isaac   Level: advanced
13669be51f97SToby Isaac 
136720f4b53cSBarry Smith .seealso `DM`, `DMFOREST`, `DMForestGetWeightCapacity()`, `DMForestSetCellWeights()`, `DMForestSetCellWeightFactor()`
13689be51f97SToby Isaac @*/
1369d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestSetWeightCapacity(DM dm, PetscReal capacity)
1370d71ae5a4SJacob Faibussowitsch {
1371c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1372c7eeac06SToby Isaac 
1373c7eeac06SToby Isaac   PetscFunctionBegin;
1374c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
137528b400f6SJacob Faibussowitsch   PetscCheck(!dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot change the weight capacity after setup");
137663a3b9bcSJacob Faibussowitsch   PetscCheck(capacity >= 0., PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot have negative weight capacity; %g", (double)capacity);
1377c7eeac06SToby Isaac   forest->weightCapacity = capacity;
13783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1379c7eeac06SToby Isaac }
1380c7eeac06SToby Isaac 
13819be51f97SToby Isaac /*@
13829be51f97SToby Isaac   DMForestGetWeightCapacity - Set the capacity of the current process when repartitioning a pre-adaptation forest (see
138320f4b53cSBarry Smith   `DMForestGetAdaptivityForest()`).  After partitioning, the ratio of the weight of each process's cells to the
13849be51f97SToby Isaac   process's capacity will be roughly equal for all processes.  A capacity of 0 indicates that the current process
13859be51f97SToby Isaac   should not have any cells after repartitioning.
13869be51f97SToby Isaac 
138720f4b53cSBarry Smith   Not Collective
13889be51f97SToby Isaac 
13899be51f97SToby Isaac   Input parameter:
13909be51f97SToby Isaac . dm - the forest
13919be51f97SToby Isaac 
13929be51f97SToby Isaac   Output parameter:
13939be51f97SToby Isaac . capacity - this process's capacity
13949be51f97SToby Isaac 
13959be51f97SToby Isaac   Level: advanced
13969be51f97SToby Isaac 
139720f4b53cSBarry Smith .seealso `DM`, `DMFOREST`, `DMForestSetWeightCapacity()`, `DMForestSetCellWeights()`, `DMForestSetCellWeightFactor()`
13989be51f97SToby Isaac @*/
1399d71ae5a4SJacob Faibussowitsch PetscErrorCode DMForestGetWeightCapacity(DM dm, PetscReal *capacity)
1400d71ae5a4SJacob Faibussowitsch {
1401c7eeac06SToby Isaac   DM_Forest *forest = (DM_Forest *)dm->data;
1402c7eeac06SToby Isaac 
1403c7eeac06SToby Isaac   PetscFunctionBegin;
1404c7eeac06SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1405c7eeac06SToby Isaac   PetscValidRealPointer(capacity, 2);
1406c7eeac06SToby Isaac   *capacity = forest->weightCapacity;
14073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1408c7eeac06SToby Isaac }
1409c7eeac06SToby Isaac 
1410d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMSetFromOptions_Forest(DM dm, PetscOptionItems *PetscOptionsObject)
1411d71ae5a4SJacob Faibussowitsch {
141256ba9f64SToby Isaac   PetscBool                  flg, flg1, flg2, flg3, flg4;
1413dd8e54a2SToby Isaac   DMForestTopology           oldTopo;
1414c7eeac06SToby Isaac   char                       stringBuffer[256];
1415dd8e54a2SToby Isaac   PetscViewer                viewer;
1416dd8e54a2SToby Isaac   PetscViewerFormat          format;
141756ba9f64SToby Isaac   PetscInt                   adjDim, adjCodim, overlap, minRefinement, initRefinement, maxRefinement, grade;
1418c7eeac06SToby Isaac   PetscReal                  weightsFactor;
1419c7eeac06SToby Isaac   DMForestAdaptivityStrategy adaptStrategy;
1420db4d5e8cSToby Isaac 
1421db4d5e8cSToby Isaac   PetscFunctionBegin;
14229566063dSJacob Faibussowitsch   PetscCall(DMForestGetTopology(dm, &oldTopo));
1423d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "DMForest Options");
14249566063dSJacob Faibussowitsch   PetscCall(PetscOptionsString("-dm_forest_topology", "the topology of the forest's base mesh", "DMForestSetTopology", oldTopo, stringBuffer, sizeof(stringBuffer), &flg1));
14259566063dSJacob Faibussowitsch   PetscCall(PetscOptionsViewer("-dm_forest_base_dm", "load the base DM from a viewer specification", "DMForestSetBaseDM", &viewer, &format, &flg2));
14269566063dSJacob Faibussowitsch   PetscCall(PetscOptionsViewer("-dm_forest_coarse_forest", "load the coarse forest from a viewer specification", "DMForestSetCoarseForest", &viewer, &format, &flg3));
14279566063dSJacob Faibussowitsch   PetscCall(PetscOptionsViewer("-dm_forest_fine_forest", "load the fine forest from a viewer specification", "DMForestSetFineForest", &viewer, &format, &flg4));
14281dca8a05SBarry Smith   PetscCheck((PetscInt)flg1 + (PetscInt)flg2 + (PetscInt)flg3 + (PetscInt)flg4 <= 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_INCOMP, "Specify only one of -dm_forest_{topology,base_dm,coarse_forest,fine_forest}");
142956ba9f64SToby Isaac   if (flg1) {
14309566063dSJacob Faibussowitsch     PetscCall(DMForestSetTopology(dm, (DMForestTopology)stringBuffer));
14319566063dSJacob Faibussowitsch     PetscCall(DMForestSetBaseDM(dm, NULL));
14329566063dSJacob Faibussowitsch     PetscCall(DMForestSetAdaptivityForest(dm, NULL));
143356ba9f64SToby Isaac   }
143456ba9f64SToby Isaac   if (flg2) {
1435dd8e54a2SToby Isaac     DM base;
1436dd8e54a2SToby Isaac 
14379566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &base));
14389566063dSJacob Faibussowitsch     PetscCall(PetscViewerPushFormat(viewer, format));
14399566063dSJacob Faibussowitsch     PetscCall(DMLoad(base, viewer));
14409566063dSJacob Faibussowitsch     PetscCall(PetscViewerDestroy(&viewer));
14419566063dSJacob Faibussowitsch     PetscCall(DMForestSetBaseDM(dm, base));
14429566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&base));
14439566063dSJacob Faibussowitsch     PetscCall(DMForestSetTopology(dm, NULL));
14449566063dSJacob Faibussowitsch     PetscCall(DMForestSetAdaptivityForest(dm, NULL));
1445dd8e54a2SToby Isaac   }
144656ba9f64SToby Isaac   if (flg3) {
1447dd8e54a2SToby Isaac     DM coarse;
1448dd8e54a2SToby Isaac 
14499566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &coarse));
14509566063dSJacob Faibussowitsch     PetscCall(PetscViewerPushFormat(viewer, format));
14519566063dSJacob Faibussowitsch     PetscCall(DMLoad(coarse, viewer));
14529566063dSJacob Faibussowitsch     PetscCall(PetscViewerDestroy(&viewer));
14539566063dSJacob Faibussowitsch     PetscCall(DMForestSetAdaptivityForest(dm, coarse));
14549566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&coarse));
14559566063dSJacob Faibussowitsch     PetscCall(DMForestSetTopology(dm, NULL));
14569566063dSJacob Faibussowitsch     PetscCall(DMForestSetBaseDM(dm, NULL));
1457dd8e54a2SToby Isaac   }
145856ba9f64SToby Isaac   if (flg4) {
1459dd8e54a2SToby Isaac     DM fine;
1460dd8e54a2SToby Isaac 
14619566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &fine));
14629566063dSJacob Faibussowitsch     PetscCall(PetscViewerPushFormat(viewer, format));
14639566063dSJacob Faibussowitsch     PetscCall(DMLoad(fine, viewer));
14649566063dSJacob Faibussowitsch     PetscCall(PetscViewerDestroy(&viewer));
14659566063dSJacob Faibussowitsch     PetscCall(DMForestSetAdaptivityForest(dm, fine));
14669566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&fine));
14679566063dSJacob Faibussowitsch     PetscCall(DMForestSetTopology(dm, NULL));
14689566063dSJacob Faibussowitsch     PetscCall(DMForestSetBaseDM(dm, NULL));
1469dd8e54a2SToby Isaac   }
14709566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdjacencyDimension(dm, &adjDim));
14719566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-dm_forest_adjacency_dimension", "set the dimension of points that define adjacency in the forest", "DMForestSetAdjacencyDimension", adjDim, &adjDim, &flg, 0));
1472dd8e54a2SToby Isaac   if (flg) {
14739566063dSJacob Faibussowitsch     PetscCall(DMForestSetAdjacencyDimension(dm, adjDim));
1474f885a11aSToby Isaac   } else {
14759566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdjacencyCodimension(dm, &adjCodim));
14769566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBoundedInt("-dm_forest_adjacency_codimension", "set the codimension of points that define adjacency in the forest", "DMForestSetAdjacencyCodimension", adjCodim, &adjCodim, &flg, 1));
14771baa6e33SBarry Smith     if (flg) PetscCall(DMForestSetAdjacencyCodimension(dm, adjCodim));
1478dd8e54a2SToby Isaac   }
14799566063dSJacob Faibussowitsch   PetscCall(DMForestGetPartitionOverlap(dm, &overlap));
14809566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-dm_forest_partition_overlap", "set the degree of partition overlap", "DMForestSetPartitionOverlap", overlap, &overlap, &flg, 0));
14811baa6e33SBarry Smith   if (flg) PetscCall(DMForestSetPartitionOverlap(dm, overlap));
1482a6121fbdSMatthew G. Knepley #if 0
14839566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-dm_refine","equivalent to -dm_forest_set_minimum_refinement and -dm_forest_set_initial_refinement with the same value",NULL,minRefinement,&minRefinement,&flg,0));
1484a6121fbdSMatthew G. Knepley   if (flg) {
14859566063dSJacob Faibussowitsch     PetscCall(DMForestSetMinimumRefinement(dm,minRefinement));
14869566063dSJacob Faibussowitsch     PetscCall(DMForestSetInitialRefinement(dm,minRefinement));
1487a6121fbdSMatthew G. Knepley   }
14889566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-dm_refine_hierarchy","equivalent to -dm_forest_set_minimum_refinement 0 and -dm_forest_set_initial_refinement",NULL,initRefinement,&initRefinement,&flg,0));
1489a6121fbdSMatthew G. Knepley   if (flg) {
14909566063dSJacob Faibussowitsch     PetscCall(DMForestSetMinimumRefinement(dm,0));
14919566063dSJacob Faibussowitsch     PetscCall(DMForestSetInitialRefinement(dm,initRefinement));
1492a6121fbdSMatthew G. Knepley   }
1493a6121fbdSMatthew G. Knepley #endif
14949566063dSJacob Faibussowitsch   PetscCall(DMForestGetMinimumRefinement(dm, &minRefinement));
14959566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-dm_forest_minimum_refinement", "set the minimum level of refinement in the forest", "DMForestSetMinimumRefinement", minRefinement, &minRefinement, &flg, 0));
14961baa6e33SBarry Smith   if (flg) PetscCall(DMForestSetMinimumRefinement(dm, minRefinement));
14979566063dSJacob Faibussowitsch   PetscCall(DMForestGetInitialRefinement(dm, &initRefinement));
14989566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-dm_forest_initial_refinement", "set the initial level of refinement in the forest", "DMForestSetInitialRefinement", initRefinement, &initRefinement, &flg, 0));
14991baa6e33SBarry Smith   if (flg) PetscCall(DMForestSetInitialRefinement(dm, initRefinement));
15009566063dSJacob Faibussowitsch   PetscCall(DMForestGetMaximumRefinement(dm, &maxRefinement));
15019566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-dm_forest_maximum_refinement", "set the maximum level of refinement in the forest", "DMForestSetMaximumRefinement", maxRefinement, &maxRefinement, &flg, 0));
15021baa6e33SBarry Smith   if (flg) PetscCall(DMForestSetMaximumRefinement(dm, maxRefinement));
15039566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityStrategy(dm, &adaptStrategy));
15049566063dSJacob Faibussowitsch   PetscCall(PetscOptionsString("-dm_forest_adaptivity_strategy", "the forest's adaptivity-flag resolution strategy", "DMForestSetAdaptivityStrategy", adaptStrategy, stringBuffer, sizeof(stringBuffer), &flg));
15051baa6e33SBarry Smith   if (flg) PetscCall(DMForestSetAdaptivityStrategy(dm, (DMForestAdaptivityStrategy)stringBuffer));
15069566063dSJacob Faibussowitsch   PetscCall(DMForestGetGradeFactor(dm, &grade));
15079566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBoundedInt("-dm_forest_grade_factor", "grade factor between neighboring cells", "DMForestSetGradeFactor", grade, &grade, &flg, 0));
15081baa6e33SBarry Smith   if (flg) PetscCall(DMForestSetGradeFactor(dm, grade));
15099566063dSJacob Faibussowitsch   PetscCall(DMForestGetCellWeightFactor(dm, &weightsFactor));
15109566063dSJacob Faibussowitsch   PetscCall(PetscOptionsReal("-dm_forest_cell_weight_factor", "multiplying weight factor for cell refinement", "DMForestSetCellWeightFactor", weightsFactor, &weightsFactor, &flg));
15111baa6e33SBarry Smith   if (flg) PetscCall(DMForestSetCellWeightFactor(dm, weightsFactor));
1512d0609cedSBarry Smith   PetscOptionsHeadEnd();
15133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1514db4d5e8cSToby Isaac }
1515db4d5e8cSToby Isaac 
1516d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM_Forest(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
1517d71ae5a4SJacob Faibussowitsch {
1518d8984e3bSMatthew G. Knepley   PetscFunctionBegin;
15199566063dSJacob Faibussowitsch   if (subdm) PetscCall(DMClone(dm, subdm));
15209566063dSJacob Faibussowitsch   PetscCall(DMCreateSectionSubDM(dm, numFields, fields, is, subdm));
15213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1522d8984e3bSMatthew G. Knepley }
1523d8984e3bSMatthew G. Knepley 
1524d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine_Forest(DM dm, MPI_Comm comm, DM *dmRefined)
1525d71ae5a4SJacob Faibussowitsch {
15265421bac9SToby Isaac   DMLabel refine;
15275421bac9SToby Isaac   DM      fineDM;
15285421bac9SToby Isaac 
15295421bac9SToby Isaac   PetscFunctionBegin;
15309566063dSJacob Faibussowitsch   PetscCall(DMGetFineDM(dm, &fineDM));
15315421bac9SToby Isaac   if (fineDM) {
15329566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)fineDM));
15335421bac9SToby Isaac     *dmRefined = fineDM;
15343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
15355421bac9SToby Isaac   }
15369566063dSJacob Faibussowitsch   PetscCall(DMForestTemplate(dm, comm, dmRefined));
15379566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "refine", &refine));
15385421bac9SToby Isaac   if (!refine) {
15399566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "refine", &refine));
15409566063dSJacob Faibussowitsch     PetscCall(DMLabelSetDefaultValue(refine, DM_ADAPT_REFINE));
15411baa6e33SBarry Smith   } else PetscCall(PetscObjectReference((PetscObject)refine));
15429566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdaptivityLabel(*dmRefined, refine));
15439566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&refine));
15443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15455421bac9SToby Isaac }
15465421bac9SToby Isaac 
1547d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen_Forest(DM dm, MPI_Comm comm, DM *dmCoarsened)
1548d71ae5a4SJacob Faibussowitsch {
15495421bac9SToby Isaac   DMLabel coarsen;
15505421bac9SToby Isaac   DM      coarseDM;
15515421bac9SToby Isaac 
15525421bac9SToby Isaac   PetscFunctionBegin;
15534098eed7SToby Isaac   {
15544098eed7SToby Isaac     PetscMPIInt mpiComparison;
15554098eed7SToby Isaac     MPI_Comm    dmcomm = PetscObjectComm((PetscObject)dm);
15564098eed7SToby Isaac 
15579566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(comm, dmcomm, &mpiComparison));
15581dca8a05SBarry Smith     PetscCheck(mpiComparison == MPI_IDENT || mpiComparison == MPI_CONGRUENT, dmcomm, PETSC_ERR_SUP, "No support for different communicators yet");
15594098eed7SToby Isaac   }
15609566063dSJacob Faibussowitsch   PetscCall(DMGetCoarseDM(dm, &coarseDM));
15615421bac9SToby Isaac   if (coarseDM) {
15629566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)coarseDM));
15635421bac9SToby Isaac     *dmCoarsened = coarseDM;
15643ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
15655421bac9SToby Isaac   }
15669566063dSJacob Faibussowitsch   PetscCall(DMForestTemplate(dm, comm, dmCoarsened));
15679566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdaptivityPurpose(*dmCoarsened, DM_ADAPT_COARSEN));
15689566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "coarsen", &coarsen));
15695421bac9SToby Isaac   if (!coarsen) {
15709566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "coarsen", &coarsen));
15719566063dSJacob Faibussowitsch     PetscCall(DMLabelSetDefaultValue(coarsen, DM_ADAPT_COARSEN));
15721baa6e33SBarry Smith   } else PetscCall(PetscObjectReference((PetscObject)coarsen));
15739566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdaptivityLabel(*dmCoarsened, coarsen));
15749566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&coarsen));
15753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15765421bac9SToby Isaac }
15775421bac9SToby Isaac 
1578d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAdaptLabel_Forest(DM dm, PETSC_UNUSED Vec metric, DMLabel label, PETSC_UNUSED DMLabel rgLabel, DM *adaptedDM)
1579d71ae5a4SJacob Faibussowitsch {
158009350103SToby Isaac   PetscBool success;
158109350103SToby Isaac 
158209350103SToby Isaac   PetscFunctionBegin;
15839566063dSJacob Faibussowitsch   PetscCall(DMForestTemplate(dm, PetscObjectComm((PetscObject)dm), adaptedDM));
15849566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdaptivityLabel(*adaptedDM, label));
15859566063dSJacob Faibussowitsch   PetscCall(DMSetUp(*adaptedDM));
15869566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivitySuccess(*adaptedDM, &success));
158709350103SToby Isaac   if (!success) {
15889566063dSJacob Faibussowitsch     PetscCall(DMDestroy(adaptedDM));
158909350103SToby Isaac     *adaptedDM = NULL;
159009350103SToby Isaac   }
15913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
159209350103SToby Isaac }
159309350103SToby Isaac 
1594d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMInitialize_Forest(DM dm)
1595d71ae5a4SJacob Faibussowitsch {
1596d222f98bSToby Isaac   PetscFunctionBegin;
15979566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(dm->ops, sizeof(*(dm->ops))));
1598d222f98bSToby Isaac 
1599d222f98bSToby Isaac   dm->ops->clone          = DMClone_Forest;
1600d222f98bSToby Isaac   dm->ops->setfromoptions = DMSetFromOptions_Forest;
1601d222f98bSToby Isaac   dm->ops->destroy        = DMDestroy_Forest;
1602d8984e3bSMatthew G. Knepley   dm->ops->createsubdm    = DMCreateSubDM_Forest;
16035421bac9SToby Isaac   dm->ops->refine         = DMRefine_Forest;
16045421bac9SToby Isaac   dm->ops->coarsen        = DMCoarsen_Forest;
16053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1606d222f98bSToby Isaac }
1607d222f98bSToby Isaac 
16089be51f97SToby Isaac /*MC
16099be51f97SToby Isaac 
161020f4b53cSBarry Smith      DMFOREST = "forest" - A DM object that encapsulates a hierarchically refined mesh.  Forests usually have a base `DM`
161120f4b53cSBarry Smith   (see `DMForestGetBaseDM()`), from which it is refined.  The refinement and partitioning of forests is considered
161220f4b53cSBarry Smith   immutable after `DMSetUp()` is called.  To adapt a mesh, one should call `DMForestTemplate()` to create a new mesh that
161320f4b53cSBarry Smith   will default to being identical to it, specify how that mesh should differ, and then calling `DMSetUp()` on the new
1614bae1f979SBarry Smith   mesh.
1615bae1f979SBarry Smith 
1616bae1f979SBarry Smith   To specify that a mesh should be refined or coarsened from the previous mesh, a label should be defined on the
161720f4b53cSBarry Smith   previous mesh whose values indicate which cells should be refined (`DM_ADAPT_REFINE`) or coarsened (`DM_ADAPT_COARSEN`)
1618bae1f979SBarry Smith   and how (subtypes are free to allow additional values for things like anisotropic refinement).  The label should be
161920f4b53cSBarry Smith   given to the *new* mesh with `DMForestSetAdaptivityLabel()`.
16209be51f97SToby Isaac 
16219be51f97SToby Isaac   Level: advanced
16229be51f97SToby Isaac 
162320f4b53cSBarry Smith .seealso: `DMType`, `DM`, `DMCreate()`, `DMSetType()`, `DMForestGetBaseDM()`, `DMForestSetBaseDM()`, `DMForestTemplate()`, `DMForestSetAdaptivityLabel()`
16249be51f97SToby Isaac M*/
16259be51f97SToby Isaac 
1626d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreate_Forest(DM dm)
1627d71ae5a4SJacob Faibussowitsch {
1628db4d5e8cSToby Isaac   DM_Forest *forest;
1629db4d5e8cSToby Isaac 
1630db4d5e8cSToby Isaac   PetscFunctionBegin;
1631db4d5e8cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16324dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&forest));
1633db4d5e8cSToby Isaac   dm->dim                     = 0;
1634db4d5e8cSToby Isaac   dm->data                    = forest;
1635db4d5e8cSToby Isaac   forest->refct               = 1;
1636db4d5e8cSToby Isaac   forest->data                = NULL;
1637db4d5e8cSToby Isaac   forest->topology            = NULL;
1638cd3c525cSToby Isaac   forest->adapt               = NULL;
1639db4d5e8cSToby Isaac   forest->base                = NULL;
16406a87ffbfSToby Isaac   forest->adaptPurpose        = DM_ADAPT_DETERMINE;
1641db4d5e8cSToby Isaac   forest->adjDim              = PETSC_DEFAULT;
1642db4d5e8cSToby Isaac   forest->overlap             = PETSC_DEFAULT;
1643db4d5e8cSToby Isaac   forest->minRefinement       = PETSC_DEFAULT;
1644db4d5e8cSToby Isaac   forest->maxRefinement       = PETSC_DEFAULT;
164556ba9f64SToby Isaac   forest->initRefinement      = PETSC_DEFAULT;
1646c7eeac06SToby Isaac   forest->cStart              = PETSC_DETERMINE;
1647c7eeac06SToby Isaac   forest->cEnd                = PETSC_DETERMINE;
1648cd3c525cSToby Isaac   forest->cellSF              = NULL;
1649ebdf65a2SToby Isaac   forest->adaptLabel          = NULL;
1650db4d5e8cSToby Isaac   forest->gradeFactor         = 2;
1651db4d5e8cSToby Isaac   forest->cellWeights         = NULL;
1652db4d5e8cSToby Isaac   forest->cellWeightsCopyMode = PETSC_USE_POINTER;
1653db4d5e8cSToby Isaac   forest->weightsFactor       = 1.;
1654db4d5e8cSToby Isaac   forest->weightCapacity      = 1.;
16559566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdaptivityStrategy(dm, DMFORESTADAPTALL));
16569566063dSJacob Faibussowitsch   PetscCall(DMInitialize_Forest(dm));
16573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1658db4d5e8cSToby Isaac }
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