1a4963045SJacob Faibussowitsch #pragma once 23ea99036SJacob Faibussowitsch 30a96aa3bSJed Brown #include <petscds.h> 4707c51c7SToby Isaac #include <petscfe.h> 50a96aa3bSJed Brown #include <petsc/private/dmimpl.h> 60a96aa3bSJed Brown #include <petsc/private/dmforestimpl.h> 70a96aa3bSJed Brown #include <petsc/private/dmpleximpl.h> 80a96aa3bSJed Brown #include <petsc/private/dmlabelimpl.h> 90a96aa3bSJed Brown #include <petsc/private/viewerimpl.h> 100a96aa3bSJed Brown #include <../src/sys/classes/viewer/impls/vtk/vtkvimpl.h> 110a96aa3bSJed Brown #include "petsc_p4est_package.h" 120a96aa3bSJed Brown 130a96aa3bSJed Brown #if defined(PETSC_HAVE_P4EST) 140a96aa3bSJed Brown 150a96aa3bSJed Brown #if !defined(P4_TO_P8) 160a96aa3bSJed Brown #include <p4est.h> 170a96aa3bSJed Brown #include <p4est_extended.h> 180a96aa3bSJed Brown #include <p4est_geometry.h> 190a96aa3bSJed Brown #include <p4est_ghost.h> 200a96aa3bSJed Brown #include <p4est_lnodes.h> 210a96aa3bSJed Brown #include <p4est_vtk.h> 220a96aa3bSJed Brown #include <p4est_plex.h> 230a96aa3bSJed Brown #include <p4est_bits.h> 240a96aa3bSJed Brown #include <p4est_algorithms.h> 250a96aa3bSJed Brown #else 260a96aa3bSJed Brown #include <p8est.h> 270a96aa3bSJed Brown #include <p8est_extended.h> 280a96aa3bSJed Brown #include <p8est_geometry.h> 290a96aa3bSJed Brown #include <p8est_ghost.h> 300a96aa3bSJed Brown #include <p8est_lnodes.h> 310a96aa3bSJed Brown #include <p8est_vtk.h> 320a96aa3bSJed Brown #include <p8est_plex.h> 330a96aa3bSJed Brown #include <p8est_bits.h> 340a96aa3bSJed Brown #include <p8est_algorithms.h> 350a96aa3bSJed Brown #endif 360a96aa3bSJed Brown 379371c9d4SSatish Balay typedef enum { 389371c9d4SSatish Balay PATTERN_HASH, 399371c9d4SSatish Balay PATTERN_FRACTAL, 409371c9d4SSatish Balay PATTERN_CORNER, 419371c9d4SSatish Balay PATTERN_CENTER, 429371c9d4SSatish Balay PATTERN_COUNT 439371c9d4SSatish Balay } DMRefinePattern; 440a96aa3bSJed Brown static const char *DMRefinePatternName[PATTERN_COUNT] = {"hash", "fractal", "corner", "center"}; 450a96aa3bSJed Brown 469371c9d4SSatish Balay typedef struct _DMRefinePatternCtx { 470a96aa3bSJed Brown PetscInt corner; 480a96aa3bSJed Brown PetscBool fractal[P4EST_CHILDREN]; 490a96aa3bSJed Brown PetscReal hashLikelihood; 500a96aa3bSJed Brown PetscInt maxLevel; 510a96aa3bSJed Brown p4est_refine_t refine_fn; 529371c9d4SSatish Balay } DMRefinePatternCtx; 530a96aa3bSJed Brown 54d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Corner(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 55d71ae5a4SJacob Faibussowitsch { 560a96aa3bSJed Brown p4est_quadrant_t root, rootcorner; 570a96aa3bSJed Brown DMRefinePatternCtx *ctx; 580a96aa3bSJed Brown 590a96aa3bSJed Brown ctx = (DMRefinePatternCtx *)p4est->user_pointer; 600a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 610a96aa3bSJed Brown 620a96aa3bSJed Brown root.x = root.y = 0; 630a96aa3bSJed Brown #if defined(P4_TO_P8) 640a96aa3bSJed Brown root.z = 0; 650a96aa3bSJed Brown #endif 660a96aa3bSJed Brown root.level = 0; 670a96aa3bSJed Brown p4est_quadrant_corner_descendant(&root, &rootcorner, ctx->corner, quadrant->level); 680a96aa3bSJed Brown if (p4est_quadrant_is_equal(quadrant, &rootcorner)) return 1; 690a96aa3bSJed Brown return 0; 700a96aa3bSJed Brown } 710a96aa3bSJed Brown 72d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Center(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 73d71ae5a4SJacob Faibussowitsch { 740a96aa3bSJed Brown int cid; 750a96aa3bSJed Brown p4est_quadrant_t ancestor, ancestorcorner; 760a96aa3bSJed Brown DMRefinePatternCtx *ctx; 770a96aa3bSJed Brown 780a96aa3bSJed Brown ctx = (DMRefinePatternCtx *)p4est->user_pointer; 790a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 800a96aa3bSJed Brown if (quadrant->level <= 1) return 1; 810a96aa3bSJed Brown 820a96aa3bSJed Brown p4est_quadrant_ancestor(quadrant, 1, &ancestor); 830a96aa3bSJed Brown cid = p4est_quadrant_child_id(&ancestor); 840a96aa3bSJed Brown p4est_quadrant_corner_descendant(&ancestor, &ancestorcorner, P4EST_CHILDREN - 1 - cid, quadrant->level); 850a96aa3bSJed Brown if (p4est_quadrant_is_equal(quadrant, &ancestorcorner)) return 1; 860a96aa3bSJed Brown return 0; 870a96aa3bSJed Brown } 880a96aa3bSJed Brown 89d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Fractal(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 90d71ae5a4SJacob Faibussowitsch { 910a96aa3bSJed Brown int cid; 920a96aa3bSJed Brown DMRefinePatternCtx *ctx; 930a96aa3bSJed Brown 940a96aa3bSJed Brown ctx = (DMRefinePatternCtx *)p4est->user_pointer; 950a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 960a96aa3bSJed Brown if (!quadrant->level) return 1; 970a96aa3bSJed Brown cid = p4est_quadrant_child_id(quadrant); 980a96aa3bSJed Brown if (ctx->fractal[cid ^ ((int)(quadrant->level % P4EST_CHILDREN))]) return 1; 990a96aa3bSJed Brown return 0; 1000a96aa3bSJed Brown } 1010a96aa3bSJed Brown 1020a96aa3bSJed Brown /* simplified from MurmurHash3 by Austin Appleby */ 1030a96aa3bSJed Brown #define DMPROT32(x, y) ((x << y) | (x >> (32 - y))) 104d71ae5a4SJacob Faibussowitsch static uint32_t DMPforestHash(const uint32_t *blocks, uint32_t nblocks) 105d71ae5a4SJacob Faibussowitsch { 1060a96aa3bSJed Brown uint32_t c1 = 0xcc9e2d51; 1070a96aa3bSJed Brown uint32_t c2 = 0x1b873593; 1080a96aa3bSJed Brown uint32_t r1 = 15; 1090a96aa3bSJed Brown uint32_t r2 = 13; 1100a96aa3bSJed Brown uint32_t m = 5; 1110a96aa3bSJed Brown uint32_t n = 0xe6546b64; 1120a96aa3bSJed Brown uint32_t hash = 0; 1130a96aa3bSJed Brown int len = nblocks * 4; 1140a96aa3bSJed Brown uint32_t i; 1150a96aa3bSJed Brown 1160a96aa3bSJed Brown for (i = 0; i < nblocks; i++) { 1170a96aa3bSJed Brown uint32_t k; 1180a96aa3bSJed Brown 1190a96aa3bSJed Brown k = blocks[i]; 1200a96aa3bSJed Brown k *= c1; 1210a96aa3bSJed Brown k = DMPROT32(k, r1); 1220a96aa3bSJed Brown k *= c2; 1230a96aa3bSJed Brown 1240a96aa3bSJed Brown hash ^= k; 1250a96aa3bSJed Brown hash = DMPROT32(hash, r2) * m + n; 1260a96aa3bSJed Brown } 1270a96aa3bSJed Brown 1280a96aa3bSJed Brown hash ^= len; 1290a96aa3bSJed Brown hash ^= (hash >> 16); 1300a96aa3bSJed Brown hash *= 0x85ebca6b; 1310a96aa3bSJed Brown hash ^= (hash >> 13); 1320a96aa3bSJed Brown hash *= 0xc2b2ae35; 1330a96aa3bSJed Brown hash ^= (hash >> 16); 1340a96aa3bSJed Brown 1350a96aa3bSJed Brown return hash; 1360a96aa3bSJed Brown } 1370a96aa3bSJed Brown 1380a96aa3bSJed Brown #if defined(UINT32_MAX) 1390a96aa3bSJed Brown #define DMP4EST_HASH_MAX UINT32_MAX 1400a96aa3bSJed Brown #else 1410a96aa3bSJed Brown #define DMP4EST_HASH_MAX ((uint32_t)0xffffffff) 1420a96aa3bSJed Brown #endif 1430a96aa3bSJed Brown 144d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Hash(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 145d71ae5a4SJacob Faibussowitsch { 1460a96aa3bSJed Brown uint32_t data[5]; 1470a96aa3bSJed Brown uint32_t result; 1480a96aa3bSJed Brown DMRefinePatternCtx *ctx; 1490a96aa3bSJed Brown 1500a96aa3bSJed Brown ctx = (DMRefinePatternCtx *)p4est->user_pointer; 1510a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 1520a96aa3bSJed Brown data[0] = ((uint32_t)quadrant->level) << 24; 1530a96aa3bSJed Brown data[1] = (uint32_t)which_tree; 1540a96aa3bSJed Brown data[2] = (uint32_t)quadrant->x; 1550a96aa3bSJed Brown data[3] = (uint32_t)quadrant->y; 1560a96aa3bSJed Brown #if defined(P4_TO_P8) 1570a96aa3bSJed Brown data[4] = (uint32_t)quadrant->z; 1580a96aa3bSJed Brown #endif 1590a96aa3bSJed Brown 1600a96aa3bSJed Brown result = DMPforestHash(data, 2 + P4EST_DIM); 1610a96aa3bSJed Brown if (((double)result / (double)DMP4EST_HASH_MAX) < ctx->hashLikelihood) return 1; 1620a96aa3bSJed Brown return 0; 1630a96aa3bSJed Brown } 1640a96aa3bSJed Brown 1650a96aa3bSJed Brown #define DMConvert_pforest_plex _infix_pforest(DMConvert, _plex) 1660a96aa3bSJed Brown static PetscErrorCode DMConvert_pforest_plex(DM, DMType, DM *); 1670a96aa3bSJed Brown 1680a96aa3bSJed Brown #define DMFTopology_pforest _append_pforest(DMFTopology) 1690a96aa3bSJed Brown typedef struct { 1700a96aa3bSJed Brown PetscInt refct; 1710a96aa3bSJed Brown p4est_connectivity_t *conn; 1720a96aa3bSJed Brown p4est_geometry_t *geom; 1730a96aa3bSJed Brown PetscInt *tree_face_to_uniq; /* p4est does not explicitly enumerate facets, but we must to keep track of labels */ 1740a96aa3bSJed Brown } DMFTopology_pforest; 1750a96aa3bSJed Brown 1760a96aa3bSJed Brown #define DM_Forest_pforest _append_pforest(DM_Forest) 1770a96aa3bSJed Brown typedef struct { 1780a96aa3bSJed Brown DMFTopology_pforest *topo; 1790a96aa3bSJed Brown p4est_t *forest; 1800a96aa3bSJed Brown p4est_ghost_t *ghost; 1810a96aa3bSJed Brown p4est_lnodes_t *lnodes; 1820a96aa3bSJed Brown PetscBool partition_for_coarsening; 1830a96aa3bSJed Brown PetscBool coarsen_hierarchy; 1840a96aa3bSJed Brown PetscBool labelsFinalized; 1850a96aa3bSJed Brown PetscBool adaptivitySuccess; 1860a96aa3bSJed Brown PetscInt cLocalStart; 1870a96aa3bSJed Brown PetscInt cLocalEnd; 1880a96aa3bSJed Brown DM plex; 1890a96aa3bSJed Brown char *ghostName; 1900a96aa3bSJed Brown PetscSF pointAdaptToSelfSF; 1910a96aa3bSJed Brown PetscSF pointSelfToAdaptSF; 1920a96aa3bSJed Brown PetscInt *pointAdaptToSelfCids; 1930a96aa3bSJed Brown PetscInt *pointSelfToAdaptCids; 1940a96aa3bSJed Brown } DM_Forest_pforest; 1950a96aa3bSJed Brown 1960a96aa3bSJed Brown #define DM_Forest_geometry_pforest _append_pforest(DM_Forest_geometry) 1970a96aa3bSJed Brown typedef struct { 1980a96aa3bSJed Brown DM base; 1990a96aa3bSJed Brown PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *); 2000a96aa3bSJed Brown void *mapCtx; 2010a96aa3bSJed Brown PetscInt coordDim; 2020a96aa3bSJed Brown p4est_geometry_t *inner; 2039371c9d4SSatish Balay } DM_Forest_geometry_pforest; 2040a96aa3bSJed Brown 2050a96aa3bSJed Brown #define GeometryMapping_pforest _append_pforest(GeometryMapping) 206d71ae5a4SJacob Faibussowitsch static void GeometryMapping_pforest(p4est_geometry_t *geom, p4est_topidx_t which_tree, const double abc[3], double xyz[3]) 207d71ae5a4SJacob Faibussowitsch { 2080a96aa3bSJed Brown DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest *)geom->user; 2090a96aa3bSJed Brown PetscReal PetscABC[3] = {0.}; 2100a96aa3bSJed Brown PetscReal PetscXYZ[3] = {0.}; 2110a96aa3bSJed Brown PetscInt i, d = PetscMin(3, geom_pforest->coordDim); 2120a96aa3bSJed Brown double ABC[3]; 2130a96aa3bSJed Brown PetscErrorCode ierr; 2140a96aa3bSJed Brown 2150a96aa3bSJed Brown (geom_pforest->inner->X)(geom_pforest->inner, which_tree, abc, ABC); 2160a96aa3bSJed Brown 2170a96aa3bSJed Brown for (i = 0; i < d; i++) PetscABC[i] = ABC[i]; 2189371c9d4SSatish Balay ierr = (geom_pforest->map)(geom_pforest->base, (PetscInt)which_tree, geom_pforest->coordDim, PetscABC, PetscXYZ, geom_pforest->mapCtx); 2199371c9d4SSatish Balay PETSC_P4EST_ASSERT(!ierr); 2200a96aa3bSJed Brown for (i = 0; i < d; i++) xyz[i] = PetscXYZ[i]; 2210a96aa3bSJed Brown } 2220a96aa3bSJed Brown 2230a96aa3bSJed Brown #define GeometryDestroy_pforest _append_pforest(GeometryDestroy) 224d71ae5a4SJacob Faibussowitsch static void GeometryDestroy_pforest(p4est_geometry_t *geom) 225d71ae5a4SJacob Faibussowitsch { 2260a96aa3bSJed Brown DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest *)geom->user; 2270a96aa3bSJed Brown PetscErrorCode ierr; 2280a96aa3bSJed Brown 2290a96aa3bSJed Brown p4est_geometry_destroy(geom_pforest->inner); 2309371c9d4SSatish Balay ierr = PetscFree(geom->user); 2319371c9d4SSatish Balay PETSC_P4EST_ASSERT(!ierr); 2329371c9d4SSatish Balay ierr = PetscFree(geom); 2339371c9d4SSatish Balay PETSC_P4EST_ASSERT(!ierr); 2340a96aa3bSJed Brown } 2350a96aa3bSJed Brown 2360a96aa3bSJed Brown #define DMFTopologyDestroy_pforest _append_pforest(DMFTopologyDestroy) 237d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFTopologyDestroy_pforest(DMFTopology_pforest **topo) 238d71ae5a4SJacob Faibussowitsch { 2390a96aa3bSJed Brown PetscFunctionBegin; 2404ad8454bSPierre Jolivet if (!*topo) PetscFunctionReturn(PETSC_SUCCESS); 2410a96aa3bSJed Brown if (--((*topo)->refct) > 0) { 2420a96aa3bSJed Brown *topo = NULL; 2433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2440a96aa3bSJed Brown } 245792fecdfSBarry Smith if ((*topo)->geom) PetscCallP4est(p4est_geometry_destroy, ((*topo)->geom)); 246792fecdfSBarry Smith PetscCallP4est(p4est_connectivity_destroy, ((*topo)->conn)); 2479566063dSJacob Faibussowitsch PetscCall(PetscFree((*topo)->tree_face_to_uniq)); 2489566063dSJacob Faibussowitsch PetscCall(PetscFree(*topo)); 2490a96aa3bSJed Brown *topo = NULL; 2503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2510a96aa3bSJed Brown } 2520a96aa3bSJed Brown 2530a96aa3bSJed Brown static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t *, PetscInt **); 2540a96aa3bSJed Brown 2550a96aa3bSJed Brown #define DMFTopologyCreateBrick_pforest _append_pforest(DMFTopologyCreateBrick) 256d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFTopologyCreateBrick_pforest(DM dm, PetscInt N[], PetscInt P[], PetscReal B[], DMFTopology_pforest **topo, PetscBool useMorton) 257d71ae5a4SJacob Faibussowitsch { 2580a96aa3bSJed Brown double *vertices; 2590a96aa3bSJed Brown PetscInt i, numVerts; 2600a96aa3bSJed Brown 2610a96aa3bSJed Brown PetscFunctionBegin; 26228b400f6SJacob Faibussowitsch PetscCheck(useMorton, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Lexicographic ordering not implemented yet"); 2634dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(topo)); 2640a96aa3bSJed Brown 2650a96aa3bSJed Brown (*topo)->refct = 1; 2660a96aa3bSJed Brown #if !defined(P4_TO_P8) 267792fecdfSBarry Smith PetscCallP4estReturn((*topo)->conn, p4est_connectivity_new_brick, ((int)N[0], (int)N[1], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1)); 2680a96aa3bSJed Brown #else 269792fecdfSBarry Smith PetscCallP4estReturn((*topo)->conn, p8est_connectivity_new_brick, ((int)N[0], (int)N[1], (int)N[2], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1, (P[2] == DM_BOUNDARY_NONE) ? 0 : 1)); 2700a96aa3bSJed Brown #endif 2710a96aa3bSJed Brown numVerts = (*topo)->conn->num_vertices; 2720a96aa3bSJed Brown vertices = (*topo)->conn->vertices; 2730a96aa3bSJed Brown for (i = 0; i < 3 * numVerts; i++) { 2740a96aa3bSJed Brown PetscInt j = i % 3; 2750a96aa3bSJed Brown 2760a96aa3bSJed Brown vertices[i] = B[2 * j] + (vertices[i] / N[j]) * (B[2 * j + 1] - B[2 * j]); 2770a96aa3bSJed Brown } 2780a96aa3bSJed Brown (*topo)->geom = NULL; 2799566063dSJacob Faibussowitsch PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn, &(*topo)->tree_face_to_uniq)); 2803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2810a96aa3bSJed Brown } 2820a96aa3bSJed Brown 2830a96aa3bSJed Brown #define DMFTopologyCreate_pforest _append_pforest(DMFTopologyCreate) 284d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFTopologyCreate_pforest(DM dm, DMForestTopology topologyName, DMFTopology_pforest **topo) 285d71ae5a4SJacob Faibussowitsch { 2860a96aa3bSJed Brown const char *name = (const char *)topologyName; 2870a96aa3bSJed Brown const char *prefix; 2880a96aa3bSJed Brown PetscBool isBrick, isShell, isSphere, isMoebius; 2890a96aa3bSJed Brown 2900a96aa3bSJed Brown PetscFunctionBegin; 2910a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2924f572ea9SToby Isaac PetscAssertPointer(name, 2); 2934f572ea9SToby Isaac PetscAssertPointer(topo, 3); 2949566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "brick", &isBrick)); 2959566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "shell", &isShell)); 2969566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "sphere", &isSphere)); 2979566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "moebius", &isMoebius)); 2989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 2990a96aa3bSJed Brown if (isBrick) { 3000a96aa3bSJed Brown PetscBool flgN, flgP, flgM, flgB, useMorton = PETSC_TRUE, periodic = PETSC_FALSE; 3010a96aa3bSJed Brown PetscInt N[3] = {2, 2, 2}, P[3] = {0, 0, 0}, nretN = P4EST_DIM, nretP = P4EST_DIM, nretB = 2 * P4EST_DIM, i; 3024fb89dddSMatthew G. Knepley PetscReal B[6] = {0.0, 1.0, 0.0, 1.0, 0.0, 1.0}, Lstart[3] = {0., 0., 0.}, L[3] = {-1.0, -1.0, -1.0}, maxCell[3] = {-1.0, -1.0, -1.0}; 3030a96aa3bSJed Brown 3040a96aa3bSJed Brown if (dm->setfromoptionscalled) { 3059566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_size", N, &nretN, &flgN)); 3069566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_periodicity", P, &nretP, &flgP)); 3079566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetRealArray(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_bounds", B, &nretB, &flgB)); 3089566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_use_morton_curve", &useMorton, &flgM)); 3091dca8a05SBarry Smith PetscCheck(!flgN || nretN == P4EST_DIM, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Need to give %d sizes in -dm_p4est_brick_size, gave %" PetscInt_FMT, P4EST_DIM, nretN); 3101dca8a05SBarry Smith PetscCheck(!flgP || nretP == P4EST_DIM, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Need to give %d periodicities in -dm_p4est_brick_periodicity, gave %" PetscInt_FMT, P4EST_DIM, nretP); 3111dca8a05SBarry Smith PetscCheck(!flgB || nretB == 2 * P4EST_DIM, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Need to give %d bounds in -dm_p4est_brick_bounds, gave %" PetscInt_FMT, P4EST_DIM, nretP); 3120a96aa3bSJed Brown } 3130a96aa3bSJed Brown for (i = 0; i < P4EST_DIM; i++) { 3140a96aa3bSJed Brown P[i] = (P[i] ? DM_BOUNDARY_PERIODIC : DM_BOUNDARY_NONE); 3150a96aa3bSJed Brown periodic = (PetscBool)(P[i] || periodic); 3160a96aa3bSJed Brown if (!flgB) B[2 * i + 1] = N[i]; 3176858538eSMatthew G. Knepley if (P[i]) { 3184fb89dddSMatthew G. Knepley Lstart[i] = B[2 * i + 0]; 3194fb89dddSMatthew G. Knepley L[i] = B[2 * i + 1] - B[2 * i + 0]; 3206858538eSMatthew G. Knepley maxCell[i] = 1.1 * (L[i] / N[i]); 3216858538eSMatthew G. Knepley } 3220a96aa3bSJed Brown } 3239566063dSJacob Faibussowitsch PetscCall(DMFTopologyCreateBrick_pforest(dm, N, P, B, topo, useMorton)); 3244fb89dddSMatthew G. Knepley if (periodic) PetscCall(DMSetPeriodicity(dm, maxCell, Lstart, L)); 3250a96aa3bSJed Brown } else { 3264dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(topo)); 3270a96aa3bSJed Brown 3280a96aa3bSJed Brown (*topo)->refct = 1; 329792fecdfSBarry Smith PetscCallP4estReturn((*topo)->conn, p4est_connectivity_new_byname, (name)); 3300a96aa3bSJed Brown (*topo)->geom = NULL; 3311baa6e33SBarry Smith if (isMoebius) PetscCall(DMSetCoordinateDim(dm, 3)); 3320a96aa3bSJed Brown #if defined(P4_TO_P8) 3330a96aa3bSJed Brown if (isShell) { 3340a96aa3bSJed Brown PetscReal R2 = 1., R1 = .55; 3350a96aa3bSJed Brown 3360a96aa3bSJed Brown if (dm->setfromoptionscalled) { 3379566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_shell_outer_radius", &R2, NULL)); 3389566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_shell_inner_radius", &R1, NULL)); 3390a96aa3bSJed Brown } 340792fecdfSBarry Smith PetscCallP4estReturn((*topo)->geom, p8est_geometry_new_shell, ((*topo)->conn, R2, R1)); 3410a96aa3bSJed Brown } else if (isSphere) { 3420a96aa3bSJed Brown PetscReal R2 = 1., R1 = 0.191728, R0 = 0.039856; 3430a96aa3bSJed Brown 3440a96aa3bSJed Brown if (dm->setfromoptionscalled) { 3459566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_sphere_outer_radius", &R2, NULL)); 3469566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_sphere_inner_radius", &R1, NULL)); 3479566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_sphere_core_radius", &R0, NULL)); 3480a96aa3bSJed Brown } 349792fecdfSBarry Smith PetscCallP4estReturn((*topo)->geom, p8est_geometry_new_sphere, ((*topo)->conn, R2, R1, R0)); 3500a96aa3bSJed Brown } 3510a96aa3bSJed Brown #endif 3529566063dSJacob Faibussowitsch PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn, &(*topo)->tree_face_to_uniq)); 3530a96aa3bSJed Brown } 3543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3550a96aa3bSJed Brown } 3560a96aa3bSJed Brown 3570a96aa3bSJed Brown #define DMConvert_plex_pforest _append_pforest(DMConvert_plex) 358d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvert_plex_pforest(DM dm, DMType newtype, DM *pforest) 359d71ae5a4SJacob Faibussowitsch { 3600a96aa3bSJed Brown MPI_Comm comm; 3610a96aa3bSJed Brown PetscBool isPlex; 3620a96aa3bSJed Brown PetscInt dim; 3630a96aa3bSJed Brown void *ctx; 3640a96aa3bSJed Brown 3650a96aa3bSJed Brown PetscFunctionBegin; 3660a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3670a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)dm); 3689566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 36928b400f6SJacob Faibussowitsch PetscCheck(isPlex, comm, PETSC_ERR_ARG_WRONG, "Expected DM type %s, got %s", DMPLEX, ((PetscObject)dm)->type_name); 3709566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 37163a3b9bcSJacob Faibussowitsch PetscCheck(dim == P4EST_DIM, comm, PETSC_ERR_ARG_WRONG, "Expected DM dimension %d, got %" PetscInt_FMT, P4EST_DIM, dim); 3729566063dSJacob Faibussowitsch PetscCall(DMCreate(comm, pforest)); 3739566063dSJacob Faibussowitsch PetscCall(DMSetType(*pforest, DMPFOREST)); 3749566063dSJacob Faibussowitsch PetscCall(DMForestSetBaseDM(*pforest, dm)); 3759566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 3769566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*pforest, ctx)); 3779566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *pforest)); 3783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3790a96aa3bSJed Brown } 3800a96aa3bSJed Brown 3810a96aa3bSJed Brown #define DMForestDestroy_pforest _append_pforest(DMForestDestroy) 382d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestDestroy_pforest(DM dm) 383d71ae5a4SJacob Faibussowitsch { 3840a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 3850a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 3860a96aa3bSJed Brown 3870a96aa3bSJed Brown PetscFunctionBegin; 3880a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 389792fecdfSBarry Smith if (pforest->lnodes) PetscCallP4est(p4est_lnodes_destroy, (pforest->lnodes)); 3900a96aa3bSJed Brown pforest->lnodes = NULL; 391792fecdfSBarry Smith if (pforest->ghost) PetscCallP4est(p4est_ghost_destroy, (pforest->ghost)); 3920a96aa3bSJed Brown pforest->ghost = NULL; 393792fecdfSBarry Smith if (pforest->forest) PetscCallP4est(p4est_destroy, (pforest->forest)); 3940a96aa3bSJed Brown pforest->forest = NULL; 3959566063dSJacob Faibussowitsch PetscCall(DMFTopologyDestroy_pforest(&pforest->topo)); 3969566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->ghostName)); 3979566063dSJacob Faibussowitsch PetscCall(DMDestroy(&pforest->plex)); 3989566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pforest->pointAdaptToSelfSF)); 3999566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pforest->pointSelfToAdaptSF)); 4009566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointAdaptToSelfCids)); 4019566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointSelfToAdaptCids)); 4029566063dSJacob Faibussowitsch PetscCall(PetscFree(forest->data)); 4033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4040a96aa3bSJed Brown } 4050a96aa3bSJed Brown 4060a96aa3bSJed Brown #define DMForestTemplate_pforest _append_pforest(DMForestTemplate) 407d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestTemplate_pforest(DM dm, DM tdm) 408d71ae5a4SJacob Faibussowitsch { 4090a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 4100a96aa3bSJed Brown DM_Forest_pforest *tpforest = (DM_Forest_pforest *)((DM_Forest *)tdm->data)->data; 4110a96aa3bSJed Brown 4120a96aa3bSJed Brown PetscFunctionBegin; 4130a96aa3bSJed Brown if (pforest->topo) pforest->topo->refct++; 414f4f49eeaSPierre Jolivet PetscCall(DMFTopologyDestroy_pforest(&tpforest->topo)); 4150a96aa3bSJed Brown tpforest->topo = pforest->topo; 4163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4170a96aa3bSJed Brown } 4180a96aa3bSJed Brown 4190a96aa3bSJed Brown #define DMPlexCreateConnectivity_pforest _append_pforest(DMPlexCreateConnectivity) 4200a96aa3bSJed Brown static PetscErrorCode DMPlexCreateConnectivity_pforest(DM, p4est_connectivity_t **, PetscInt **); 4210a96aa3bSJed Brown 4229371c9d4SSatish Balay typedef struct _PforestAdaptCtx { 4230a96aa3bSJed Brown PetscInt maxLevel; 4240a96aa3bSJed Brown PetscInt minLevel; 4250a96aa3bSJed Brown PetscInt currLevel; 4260a96aa3bSJed Brown PetscBool anyChange; 4279371c9d4SSatish Balay } PforestAdaptCtx; 4280a96aa3bSJed Brown 429d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_currlevel(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 430d71ae5a4SJacob Faibussowitsch { 4310a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4320a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4330a96aa3bSJed Brown PetscInt currLevel = ctx->currLevel; 4340a96aa3bSJed Brown 4350a96aa3bSJed Brown if (quadrants[0]->level <= minLevel) return 0; 4360a96aa3bSJed Brown return (int)((PetscInt)quadrants[0]->level == currLevel); 4370a96aa3bSJed Brown } 4380a96aa3bSJed Brown 439d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_uniform(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 440d71ae5a4SJacob Faibussowitsch { 4410a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4420a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4430a96aa3bSJed Brown 4440a96aa3bSJed Brown return (int)((PetscInt)quadrants[0]->level > minLevel); 4450a96aa3bSJed Brown } 4460a96aa3bSJed Brown 447d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_flag_any(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 448d71ae5a4SJacob Faibussowitsch { 4490a96aa3bSJed Brown PetscInt i; 4500a96aa3bSJed Brown PetscBool any = PETSC_FALSE; 4510a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4520a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4530a96aa3bSJed Brown 4540a96aa3bSJed Brown if (quadrants[0]->level <= minLevel) return 0; 4550a96aa3bSJed Brown for (i = 0; i < P4EST_CHILDREN; i++) { 4560a96aa3bSJed Brown if (quadrants[i]->p.user_int == DM_ADAPT_KEEP) { 4570a96aa3bSJed Brown any = PETSC_FALSE; 4580a96aa3bSJed Brown break; 4590a96aa3bSJed Brown } 4600a96aa3bSJed Brown if (quadrants[i]->p.user_int == DM_ADAPT_COARSEN) { 4610a96aa3bSJed Brown any = PETSC_TRUE; 4620a96aa3bSJed Brown break; 4630a96aa3bSJed Brown } 4640a96aa3bSJed Brown } 4650a96aa3bSJed Brown return any ? 1 : 0; 4660a96aa3bSJed Brown } 4670a96aa3bSJed Brown 468d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_flag_all(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 469d71ae5a4SJacob Faibussowitsch { 4700a96aa3bSJed Brown PetscInt i; 4710a96aa3bSJed Brown PetscBool all = PETSC_TRUE; 4720a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4730a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4740a96aa3bSJed Brown 4750a96aa3bSJed Brown if (quadrants[0]->level <= minLevel) return 0; 4760a96aa3bSJed Brown for (i = 0; i < P4EST_CHILDREN; i++) { 4770a96aa3bSJed Brown if (quadrants[i]->p.user_int != DM_ADAPT_COARSEN) { 4780a96aa3bSJed Brown all = PETSC_FALSE; 4790a96aa3bSJed Brown break; 4800a96aa3bSJed Brown } 4810a96aa3bSJed Brown } 4820a96aa3bSJed Brown return all ? 1 : 0; 4830a96aa3bSJed Brown } 4840a96aa3bSJed Brown 485d71ae5a4SJacob Faibussowitsch static void pforest_init_determine(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 486d71ae5a4SJacob Faibussowitsch { 4870a96aa3bSJed Brown quadrant->p.user_int = DM_ADAPT_DETERMINE; 4880a96aa3bSJed Brown } 4890a96aa3bSJed Brown 490d71ae5a4SJacob Faibussowitsch static int pforest_refine_uniform(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 491d71ae5a4SJacob Faibussowitsch { 4920a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4930a96aa3bSJed Brown PetscInt maxLevel = ctx->maxLevel; 4940a96aa3bSJed Brown 4954ad8454bSPierre Jolivet return (PetscInt)quadrant->level < maxLevel; 4960a96aa3bSJed Brown } 4970a96aa3bSJed Brown 498d71ae5a4SJacob Faibussowitsch static int pforest_refine_flag(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 499d71ae5a4SJacob Faibussowitsch { 5000a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 5010a96aa3bSJed Brown PetscInt maxLevel = ctx->maxLevel; 5020a96aa3bSJed Brown 5030a96aa3bSJed Brown if ((PetscInt)quadrant->level >= maxLevel) return 0; 5040a96aa3bSJed Brown 5054ad8454bSPierre Jolivet return quadrant->p.user_int == DM_ADAPT_REFINE; 5060a96aa3bSJed Brown } 5070a96aa3bSJed Brown 508d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestComputeLocalCellTransferSF_loop(p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, p4est_topidx_t flt, p4est_topidx_t llt, PetscInt *toFineLeavesCount, PetscInt *toLeaves, PetscSFNode *fromRoots, PetscInt *fromFineLeavesCount, PetscInt *fromLeaves, PetscSFNode *toRoots) 509d71ae5a4SJacob Faibussowitsch { 5100a96aa3bSJed Brown PetscMPIInt rank = p4estFrom->mpirank; 5110a96aa3bSJed Brown p4est_topidx_t t; 5120a96aa3bSJed Brown PetscInt toFineLeaves = 0, fromFineLeaves = 0; 5130a96aa3bSJed Brown 5140a96aa3bSJed Brown PetscFunctionBegin; 5155a96e07bSStefano Zampini /* -Wmaybe-uninitialized */ 5165a96e07bSStefano Zampini *toFineLeavesCount = 0; 5175a96e07bSStefano Zampini *fromFineLeavesCount = 0; 5180a96aa3bSJed Brown for (t = flt; t <= llt; t++) { /* count roots and leaves */ 5190a96aa3bSJed Brown p4est_tree_t *treeFrom = &(((p4est_tree_t *)p4estFrom->trees->array)[t]); 5200a96aa3bSJed Brown p4est_tree_t *treeTo = &(((p4est_tree_t *)p4estTo->trees->array)[t]); 5210a96aa3bSJed Brown p4est_quadrant_t *firstFrom = &treeFrom->first_desc; 5220a96aa3bSJed Brown p4est_quadrant_t *firstTo = &treeTo->first_desc; 5230a96aa3bSJed Brown PetscInt numFrom = (PetscInt)treeFrom->quadrants.elem_count; 5240a96aa3bSJed Brown PetscInt numTo = (PetscInt)treeTo->quadrants.elem_count; 5250a96aa3bSJed Brown p4est_quadrant_t *quadsFrom = (p4est_quadrant_t *)treeFrom->quadrants.array; 5260a96aa3bSJed Brown p4est_quadrant_t *quadsTo = (p4est_quadrant_t *)treeTo->quadrants.array; 5270a96aa3bSJed Brown PetscInt currentFrom, currentTo; 5280a96aa3bSJed Brown PetscInt treeOffsetFrom = (PetscInt)treeFrom->quadrants_offset; 5290a96aa3bSJed Brown PetscInt treeOffsetTo = (PetscInt)treeTo->quadrants_offset; 5300a96aa3bSJed Brown int comp; 5310a96aa3bSJed Brown 532792fecdfSBarry Smith PetscCallP4estReturn(comp, p4est_quadrant_is_equal, (firstFrom, firstTo)); 53328b400f6SJacob Faibussowitsch PetscCheck(comp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "non-matching partitions"); 5340a96aa3bSJed Brown 5350a96aa3bSJed Brown for (currentFrom = 0, currentTo = 0; currentFrom < numFrom && currentTo < numTo;) { 5360a96aa3bSJed Brown p4est_quadrant_t *quadFrom = &quadsFrom[currentFrom]; 5370a96aa3bSJed Brown p4est_quadrant_t *quadTo = &quadsTo[currentTo]; 5380a96aa3bSJed Brown 5390a96aa3bSJed Brown if (quadFrom->level == quadTo->level) { 5400a96aa3bSJed Brown if (toLeaves) { 5410a96aa3bSJed Brown toLeaves[toFineLeaves] = currentTo + treeOffsetTo + ToOffset; 5420a96aa3bSJed Brown fromRoots[toFineLeaves].rank = rank; 5430a96aa3bSJed Brown fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset; 5440a96aa3bSJed Brown } 5450a96aa3bSJed Brown toFineLeaves++; 5460a96aa3bSJed Brown currentFrom++; 5470a96aa3bSJed Brown currentTo++; 5480a96aa3bSJed Brown } else { 5490a96aa3bSJed Brown int fromIsAncestor; 5500a96aa3bSJed Brown 551792fecdfSBarry Smith PetscCallP4estReturn(fromIsAncestor, p4est_quadrant_is_ancestor, (quadFrom, quadTo)); 5520a96aa3bSJed Brown if (fromIsAncestor) { 5530a96aa3bSJed Brown p4est_quadrant_t lastDesc; 5540a96aa3bSJed Brown 5550a96aa3bSJed Brown if (toLeaves) { 5560a96aa3bSJed Brown toLeaves[toFineLeaves] = currentTo + treeOffsetTo + ToOffset; 5570a96aa3bSJed Brown fromRoots[toFineLeaves].rank = rank; 5580a96aa3bSJed Brown fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset; 5590a96aa3bSJed Brown } 5600a96aa3bSJed Brown toFineLeaves++; 5610a96aa3bSJed Brown currentTo++; 562792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_last_descendant, (quadFrom, &lastDesc, quadTo->level)); 563792fecdfSBarry Smith PetscCallP4estReturn(comp, p4est_quadrant_is_equal, (quadTo, &lastDesc)); 5640a96aa3bSJed Brown if (comp) currentFrom++; 5650a96aa3bSJed Brown } else { 5660a96aa3bSJed Brown p4est_quadrant_t lastDesc; 5670a96aa3bSJed Brown 5680a96aa3bSJed Brown if (fromLeaves) { 5690a96aa3bSJed Brown fromLeaves[fromFineLeaves] = currentFrom + treeOffsetFrom + FromOffset; 5700a96aa3bSJed Brown toRoots[fromFineLeaves].rank = rank; 5710a96aa3bSJed Brown toRoots[fromFineLeaves].index = currentTo + treeOffsetTo + ToOffset; 5720a96aa3bSJed Brown } 5730a96aa3bSJed Brown fromFineLeaves++; 5740a96aa3bSJed Brown currentFrom++; 575792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_last_descendant, (quadTo, &lastDesc, quadFrom->level)); 576792fecdfSBarry Smith PetscCallP4estReturn(comp, p4est_quadrant_is_equal, (quadFrom, &lastDesc)); 5770a96aa3bSJed Brown if (comp) currentTo++; 5780a96aa3bSJed Brown } 5790a96aa3bSJed Brown } 5800a96aa3bSJed Brown } 5810a96aa3bSJed Brown } 5820a96aa3bSJed Brown *toFineLeavesCount = toFineLeaves; 5830a96aa3bSJed Brown *fromFineLeavesCount = fromFineLeaves; 5843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5850a96aa3bSJed Brown } 5860a96aa3bSJed Brown 5870a96aa3bSJed Brown /* Compute the maximum level across all the trees */ 588d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetRefinementLevel(DM dm, PetscInt *lev) 589d71ae5a4SJacob Faibussowitsch { 5900a96aa3bSJed Brown p4est_topidx_t t, flt, llt; 5910a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 5920a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 5930a96aa3bSJed Brown PetscInt maxlevelloc = 0; 5940a96aa3bSJed Brown p4est_t *p4est; 5950a96aa3bSJed Brown 5960a96aa3bSJed Brown PetscFunctionBegin; 59728b400f6SJacob Faibussowitsch PetscCheck(pforest, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing DM_Forest_pforest"); 59828b400f6SJacob Faibussowitsch PetscCheck(pforest->forest, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing p4est_t"); 5990a96aa3bSJed Brown p4est = pforest->forest; 6000a96aa3bSJed Brown flt = p4est->first_local_tree; 6010a96aa3bSJed Brown llt = p4est->last_local_tree; 6020a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 6030a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4est->trees->array)[t]); 6040a96aa3bSJed Brown maxlevelloc = PetscMax((PetscInt)tree->maxlevel, maxlevelloc); 6050a96aa3bSJed Brown } 6061c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&maxlevelloc, lev, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 6073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6080a96aa3bSJed Brown } 6090a96aa3bSJed Brown 6100a96aa3bSJed Brown /* Puts identity in coarseToFine */ 6110a96aa3bSJed Brown /* assumes a matching partition */ 612d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestComputeLocalCellTransferSF(MPI_Comm comm, p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, PetscSF *fromCoarseToFine, PetscSF *toCoarseFromFine) 613d71ae5a4SJacob Faibussowitsch { 6140a96aa3bSJed Brown p4est_topidx_t flt, llt; 6150a96aa3bSJed Brown PetscSF fromCoarse, toCoarse; 6160a96aa3bSJed Brown PetscInt numRootsFrom, numRootsTo, numLeavesFrom, numLeavesTo; 6170a96aa3bSJed Brown PetscInt *fromLeaves = NULL, *toLeaves = NULL; 6180a96aa3bSJed Brown PetscSFNode *fromRoots = NULL, *toRoots = NULL; 6190a96aa3bSJed Brown 6200a96aa3bSJed Brown PetscFunctionBegin; 6210a96aa3bSJed Brown flt = p4estFrom->first_local_tree; 6220a96aa3bSJed Brown llt = p4estFrom->last_local_tree; 6239566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &fromCoarse)); 62448a46eb9SPierre Jolivet if (toCoarseFromFine) PetscCall(PetscSFCreate(comm, &toCoarse)); 6250a96aa3bSJed Brown numRootsFrom = p4estFrom->local_num_quadrants + FromOffset; 6260a96aa3bSJed Brown numRootsTo = p4estTo->local_num_quadrants + ToOffset; 6279566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom, FromOffset, p4estTo, ToOffset, flt, llt, &numLeavesTo, NULL, NULL, &numLeavesFrom, NULL, NULL)); 6289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesTo, &toLeaves)); 6299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesTo, &fromRoots)); 6300a96aa3bSJed Brown if (toCoarseFromFine) { 6319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesFrom, &fromLeaves)); 6329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesFrom, &fromRoots)); 6330a96aa3bSJed Brown } 6349566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom, FromOffset, p4estTo, ToOffset, flt, llt, &numLeavesTo, toLeaves, fromRoots, &numLeavesFrom, fromLeaves, toRoots)); 6350a96aa3bSJed Brown if (!ToOffset && (numLeavesTo == numRootsTo)) { /* compress */ 6369566063dSJacob Faibussowitsch PetscCall(PetscFree(toLeaves)); 6379566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(fromCoarse, numRootsFrom, numLeavesTo, NULL, PETSC_OWN_POINTER, fromRoots, PETSC_OWN_POINTER)); 6381baa6e33SBarry Smith } else PetscCall(PetscSFSetGraph(fromCoarse, numRootsFrom, numLeavesTo, toLeaves, PETSC_OWN_POINTER, fromRoots, PETSC_OWN_POINTER)); 6390a96aa3bSJed Brown *fromCoarseToFine = fromCoarse; 6400a96aa3bSJed Brown if (toCoarseFromFine) { 6419566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(toCoarse, numRootsTo, numLeavesFrom, fromLeaves, PETSC_OWN_POINTER, toRoots, PETSC_OWN_POINTER)); 6420a96aa3bSJed Brown *toCoarseFromFine = toCoarse; 6430a96aa3bSJed Brown } 6443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6450a96aa3bSJed Brown } 6460a96aa3bSJed Brown 6470a96aa3bSJed Brown /* range of processes whose B sections overlap this ranks A section */ 648d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestComputeOverlappingRanks(PetscMPIInt size, PetscMPIInt rank, p4est_t *p4estA, p4est_t *p4estB, PetscInt *startB, PetscInt *endB) 649d71ae5a4SJacob Faibussowitsch { 650f4f49eeaSPierre Jolivet p4est_quadrant_t *myCoarseStart = &p4estA->global_first_position[rank]; 651f4f49eeaSPierre Jolivet p4est_quadrant_t *myCoarseEnd = &p4estA->global_first_position[rank + 1]; 6520a96aa3bSJed Brown p4est_quadrant_t *globalFirstB = p4estB->global_first_position; 6530a96aa3bSJed Brown 6540a96aa3bSJed Brown PetscFunctionBegin; 6550a96aa3bSJed Brown *startB = -1; 6560a96aa3bSJed Brown *endB = -1; 6570a96aa3bSJed Brown if (p4estA->local_num_quadrants) { 6580a96aa3bSJed Brown PetscInt lo, hi, guess; 6590a96aa3bSJed Brown /* binary search to find interval containing myCoarseStart */ 6600a96aa3bSJed Brown lo = 0; 6610a96aa3bSJed Brown hi = size; 6620a96aa3bSJed Brown guess = rank; 6630a96aa3bSJed Brown while (1) { 6640a96aa3bSJed Brown int startCompMy, myCompEnd; 6650a96aa3bSJed Brown 666792fecdfSBarry Smith PetscCallP4estReturn(startCompMy, p4est_quadrant_compare_piggy, (&globalFirstB[guess], myCoarseStart)); 667792fecdfSBarry Smith PetscCallP4estReturn(myCompEnd, p4est_quadrant_compare_piggy, (myCoarseStart, &globalFirstB[guess + 1])); 6680a96aa3bSJed Brown if (startCompMy <= 0 && myCompEnd < 0) { 6690a96aa3bSJed Brown *startB = guess; 6700a96aa3bSJed Brown break; 6710a96aa3bSJed Brown } else if (startCompMy > 0) { /* guess is to high */ 6720a96aa3bSJed Brown hi = guess; 6730a96aa3bSJed Brown } else { /* guess is to low */ 6740a96aa3bSJed Brown lo = guess + 1; 6750a96aa3bSJed Brown } 6760a96aa3bSJed Brown guess = lo + (hi - lo) / 2; 6770a96aa3bSJed Brown } 6780a96aa3bSJed Brown /* reset bounds, but not guess */ 6790a96aa3bSJed Brown lo = 0; 6800a96aa3bSJed Brown hi = size; 6810a96aa3bSJed Brown while (1) { 6820a96aa3bSJed Brown int startCompMy, myCompEnd; 6830a96aa3bSJed Brown 684792fecdfSBarry Smith PetscCallP4estReturn(startCompMy, p4est_quadrant_compare_piggy, (&globalFirstB[guess], myCoarseEnd)); 685792fecdfSBarry Smith PetscCallP4estReturn(myCompEnd, p4est_quadrant_compare_piggy, (myCoarseEnd, &globalFirstB[guess + 1])); 6860a96aa3bSJed Brown if (startCompMy < 0 && myCompEnd <= 0) { /* notice that the comparison operators are different from above */ 6870a96aa3bSJed Brown *endB = guess + 1; 6880a96aa3bSJed Brown break; 6890a96aa3bSJed Brown } else if (startCompMy >= 0) { /* guess is to high */ 6900a96aa3bSJed Brown hi = guess; 6910a96aa3bSJed Brown } else { /* guess is to low */ 6920a96aa3bSJed Brown lo = guess + 1; 6930a96aa3bSJed Brown } 6940a96aa3bSJed Brown guess = lo + (hi - lo) / 2; 6950a96aa3bSJed Brown } 6960a96aa3bSJed Brown } 6973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6980a96aa3bSJed Brown } 6990a96aa3bSJed Brown 7000a96aa3bSJed Brown static PetscErrorCode DMPforestGetPlex(DM, DM *); 7010a96aa3bSJed Brown 7020a96aa3bSJed Brown #define DMSetUp_pforest _append_pforest(DMSetUp) 703d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetUp_pforest(DM dm) 704d71ae5a4SJacob Faibussowitsch { 7050a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 7060a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 7070a96aa3bSJed Brown DM base, adaptFrom; 7080a96aa3bSJed Brown DMForestTopology topoName; 7090a96aa3bSJed Brown PetscSF preCoarseToFine = NULL, coarseToPreFine = NULL; 7100a96aa3bSJed Brown PforestAdaptCtx ctx; 7110a96aa3bSJed Brown 7120a96aa3bSJed Brown PetscFunctionBegin; 713*1690c2aeSBarry Smith ctx.minLevel = PETSC_INT_MAX; 7140a96aa3bSJed Brown ctx.maxLevel = 0; 7150a96aa3bSJed Brown ctx.currLevel = 0; 7160a96aa3bSJed Brown ctx.anyChange = PETSC_FALSE; 7170a96aa3bSJed Brown /* sanity check */ 7189566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dm, &adaptFrom)); 7199566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 7209566063dSJacob Faibussowitsch PetscCall(DMForestGetTopology(dm, &topoName)); 7211dca8a05SBarry Smith PetscCheck(adaptFrom || base || topoName, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "A forest needs a topology, a base DM, or a DM to adapt from"); 7220a96aa3bSJed Brown 7230a96aa3bSJed Brown /* === Step 1: DMFTopology === */ 7240a96aa3bSJed Brown if (adaptFrom) { /* reference already created topology */ 7250a96aa3bSJed Brown PetscBool ispforest; 7260a96aa3bSJed Brown DM_Forest *aforest = (DM_Forest *)adaptFrom->data; 7270a96aa3bSJed Brown DM_Forest_pforest *apforest = (DM_Forest_pforest *)aforest->data; 7280a96aa3bSJed Brown 7299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)adaptFrom, DMPFOREST, &ispforest)); 73028b400f6SJacob Faibussowitsch PetscCheck(ispforest, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_NOTSAMETYPE, "Trying to adapt from %s, which is not %s", ((PetscObject)adaptFrom)->type_name, DMPFOREST); 73128b400f6SJacob Faibussowitsch PetscCheck(apforest->topo, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "The pre-adaptation forest must have a topology"); 7329566063dSJacob Faibussowitsch PetscCall(DMSetUp(adaptFrom)); 7339566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 7349566063dSJacob Faibussowitsch PetscCall(DMForestGetTopology(dm, &topoName)); 7350a96aa3bSJed Brown } else if (base) { /* construct a connectivity from base */ 7360a96aa3bSJed Brown PetscBool isPlex, isDA; 7370a96aa3bSJed Brown 7389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)base, &topoName)); 7399566063dSJacob Faibussowitsch PetscCall(DMForestSetTopology(dm, topoName)); 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)base, DMPLEX, &isPlex)); 7419566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)base, DMDA, &isDA)); 7420a96aa3bSJed Brown if (isPlex) { 7430a96aa3bSJed Brown MPI_Comm comm = PetscObjectComm((PetscObject)dm); 7440a96aa3bSJed Brown PetscInt depth; 7450a96aa3bSJed Brown PetscMPIInt size; 7460a96aa3bSJed Brown p4est_connectivity_t *conn = NULL; 7470a96aa3bSJed Brown DMFTopology_pforest *topo; 7480a96aa3bSJed Brown PetscInt *tree_face_to_uniq = NULL; 7490a96aa3bSJed Brown 7509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(base, &depth)); 7510a96aa3bSJed Brown if (depth == 1) { 7520a96aa3bSJed Brown DM connDM; 7530a96aa3bSJed Brown 7549566063dSJacob Faibussowitsch PetscCall(DMPlexInterpolate(base, &connDM)); 7550a96aa3bSJed Brown base = connDM; 7569566063dSJacob Faibussowitsch PetscCall(DMForestSetBaseDM(dm, base)); 7579566063dSJacob Faibussowitsch PetscCall(DMDestroy(&connDM)); 75863a3b9bcSJacob Faibussowitsch } else PetscCheck(depth == P4EST_DIM, comm, PETSC_ERR_ARG_WRONG, "Base plex is neither interpolated nor uninterpolated? depth %" PetscInt_FMT ", expected 2 or %d", depth, P4EST_DIM + 1); 7599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 7600a96aa3bSJed Brown if (size > 1) { 7610a96aa3bSJed Brown DM dmRedundant; 7620a96aa3bSJed Brown PetscSF sf; 7630a96aa3bSJed Brown 7649566063dSJacob Faibussowitsch PetscCall(DMPlexGetRedundantDM(base, &sf, &dmRedundant)); 76528b400f6SJacob Faibussowitsch PetscCheck(dmRedundant, comm, PETSC_ERR_PLIB, "Could not create redundant DM"); 7669566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dmRedundant, "_base_migration_sf", (PetscObject)sf)); 7679566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 7680a96aa3bSJed Brown base = dmRedundant; 7699566063dSJacob Faibussowitsch PetscCall(DMForestSetBaseDM(dm, base)); 7709566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRedundant)); 7710a96aa3bSJed Brown } 7729566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(base, NULL, "-dm_p4est_base_view")); 7739566063dSJacob Faibussowitsch PetscCall(DMPlexCreateConnectivity_pforest(base, &conn, &tree_face_to_uniq)); 7744dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&topo)); 7750a96aa3bSJed Brown topo->refct = 1; 7760a96aa3bSJed Brown topo->conn = conn; 7770a96aa3bSJed Brown topo->geom = NULL; 7780a96aa3bSJed Brown { 7790a96aa3bSJed Brown PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *); 7800a96aa3bSJed Brown void *mapCtx; 7810a96aa3bSJed Brown 7829566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseCoordinateMapping(dm, &map, &mapCtx)); 7830a96aa3bSJed Brown if (map) { 7840a96aa3bSJed Brown DM_Forest_geometry_pforest *geom_pforest; 7850a96aa3bSJed Brown p4est_geometry_t *geom; 7860a96aa3bSJed Brown 7879566063dSJacob Faibussowitsch PetscCall(PetscNew(&geom_pforest)); 7889566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &geom_pforest->coordDim)); 7890a96aa3bSJed Brown geom_pforest->map = map; 7900a96aa3bSJed Brown geom_pforest->mapCtx = mapCtx; 791792fecdfSBarry Smith PetscCallP4estReturn(geom_pforest->inner, p4est_geometry_new_connectivity, (conn)); 7929566063dSJacob Faibussowitsch PetscCall(PetscNew(&geom)); 7930a96aa3bSJed Brown geom->name = topoName; 7940a96aa3bSJed Brown geom->user = geom_pforest; 7950a96aa3bSJed Brown geom->X = GeometryMapping_pforest; 7960a96aa3bSJed Brown geom->destroy = GeometryDestroy_pforest; 7970a96aa3bSJed Brown topo->geom = geom; 7980a96aa3bSJed Brown } 7990a96aa3bSJed Brown } 8000a96aa3bSJed Brown topo->tree_face_to_uniq = tree_face_to_uniq; 8010a96aa3bSJed Brown pforest->topo = topo; 80228b400f6SJacob Faibussowitsch } else PetscCheck(!isDA, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Not implemented yet"); 8030a96aa3bSJed Brown #if 0 8040a96aa3bSJed Brown PetscInt N[3], P[3]; 8050a96aa3bSJed Brown 8060a96aa3bSJed Brown /* get the sizes, periodicities */ 8070a96aa3bSJed Brown /* ... */ 8080a96aa3bSJed Brown /* don't use Morton order */ 8099566063dSJacob Faibussowitsch PetscCall(DMFTopologyCreateBrick_pforest(dm,N,P,&pforest->topo,PETSC_FALSE)); 8100a96aa3bSJed Brown #endif 8110a96aa3bSJed Brown { 8120a96aa3bSJed Brown PetscInt numLabels, l; 8130a96aa3bSJed Brown 8149566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(base, &numLabels)); 8150a96aa3bSJed Brown for (l = 0; l < numLabels; l++) { 8160a96aa3bSJed Brown PetscBool isDepth, isGhost, isVTK, isDim, isCellType; 8170a96aa3bSJed Brown DMLabel label, labelNew; 8180a96aa3bSJed Brown PetscInt defVal; 8190a96aa3bSJed Brown const char *name; 8200a96aa3bSJed Brown 8219566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(base, l, &name)); 8229566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(base, l, &label)); 8239566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 8240a96aa3bSJed Brown if (isDepth) continue; 8259566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &isDim)); 8260a96aa3bSJed Brown if (isDim) continue; 8279566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &isCellType)); 8280a96aa3bSJed Brown if (isCellType) continue; 8299566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "ghost", &isGhost)); 8300a96aa3bSJed Brown if (isGhost) continue; 8319566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "vtk", &isVTK)); 8320a96aa3bSJed Brown if (isVTK) continue; 8339566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 8349566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &labelNew)); 8359566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defVal)); 8369566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(labelNew, defVal)); 8370a96aa3bSJed Brown } 8380a96aa3bSJed Brown /* map dm points (internal plex) to base 8390a96aa3bSJed Brown we currently create the subpoint_map for the entire hierarchy, starting from the finest forest 8400a96aa3bSJed Brown and propagating back to the coarsest 8410a96aa3bSJed Brown This is not an optimal approach, since we need the map only on the coarsest level 8420a96aa3bSJed Brown during DMForestTransferVecFromBase */ 8439566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &l)); 84448a46eb9SPierre Jolivet if (!l) PetscCall(DMCreateLabel(dm, "_forest_base_subpoint_map")); 8450a96aa3bSJed Brown } 8460a96aa3bSJed Brown } else { /* construct from topology name */ 8470a96aa3bSJed Brown DMFTopology_pforest *topo; 8480a96aa3bSJed Brown 8499566063dSJacob Faibussowitsch PetscCall(DMFTopologyCreate_pforest(dm, topoName, &topo)); 8500a96aa3bSJed Brown pforest->topo = topo; 8510a96aa3bSJed Brown /* TODO: construct base? */ 8520a96aa3bSJed Brown } 8530a96aa3bSJed Brown 8540a96aa3bSJed Brown /* === Step 2: get the leaves of the forest === */ 8550a96aa3bSJed Brown if (adaptFrom) { /* start with the old forest */ 8560a96aa3bSJed Brown DMLabel adaptLabel; 8570a96aa3bSJed Brown PetscInt defaultValue; 8580a96aa3bSJed Brown PetscInt numValues, numValuesGlobal, cLocalStart, count; 8590a96aa3bSJed Brown DM_Forest *aforest = (DM_Forest *)adaptFrom->data; 8600a96aa3bSJed Brown DM_Forest_pforest *apforest = (DM_Forest_pforest *)aforest->data; 8610a96aa3bSJed Brown PetscBool computeAdaptSF; 8620a96aa3bSJed Brown p4est_topidx_t flt, llt, t; 8630a96aa3bSJed Brown 8640a96aa3bSJed Brown flt = apforest->forest->first_local_tree; 8650a96aa3bSJed Brown llt = apforest->forest->last_local_tree; 8660a96aa3bSJed Brown cLocalStart = apforest->cLocalStart; 8679566063dSJacob Faibussowitsch PetscCall(DMForestGetComputeAdaptivitySF(dm, &computeAdaptSF)); 868792fecdfSBarry Smith PetscCallP4estReturn(pforest->forest, p4est_copy, (apforest->forest, 0)); /* 0 indicates no data copying */ 8699566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityLabel(dm, &adaptLabel)); 8700a96aa3bSJed Brown if (adaptLabel) { 8710a96aa3bSJed Brown /* apply the refinement/coarsening by flags, plus minimum/maximum refinement */ 8729566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(adaptLabel, &numValues)); 873712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&numValues, &numValuesGlobal, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)adaptFrom))); 8749566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(adaptLabel, &defaultValue)); 8750a96aa3bSJed Brown if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN_LAST) { /* uniform coarsen of the last level only (equivalent to DM_ADAPT_COARSEN for conforming grids) */ 8769566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &ctx.minLevel)); 8779566063dSJacob Faibussowitsch PetscCall(DMPforestGetRefinementLevel(dm, &ctx.currLevel)); 8780a96aa3bSJed Brown pforest->forest->user_pointer = (void *)&ctx; 879792fecdfSBarry Smith PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_currlevel, NULL)); 8800a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 881792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 8820a96aa3bSJed Brown /* we will have to change the offset after we compute the overlap */ 88348a46eb9SPierre Jolivet if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), pforest->forest, 0, apforest->forest, apforest->cLocalStart, &coarseToPreFine, NULL)); 8840a96aa3bSJed Brown } else if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN) { /* uniform coarsen */ 8859566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &ctx.minLevel)); 8860a96aa3bSJed Brown pforest->forest->user_pointer = (void *)&ctx; 887792fecdfSBarry Smith PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_uniform, NULL)); 8880a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 889792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 8900a96aa3bSJed Brown /* we will have to change the offset after we compute the overlap */ 89148a46eb9SPierre Jolivet if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), pforest->forest, 0, apforest->forest, apforest->cLocalStart, &coarseToPreFine, NULL)); 8920a96aa3bSJed Brown } else if (!numValuesGlobal && defaultValue == DM_ADAPT_REFINE) { /* uniform refine */ 8939566063dSJacob Faibussowitsch PetscCall(DMForestGetMaximumRefinement(dm, &ctx.maxLevel)); 8940a96aa3bSJed Brown pforest->forest->user_pointer = (void *)&ctx; 895792fecdfSBarry Smith PetscCallP4est(p4est_refine, (pforest->forest, 0, pforest_refine_uniform, NULL)); 8960a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 897792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 8980a96aa3bSJed Brown /* we will have to change the offset after we compute the overlap */ 89948a46eb9SPierre Jolivet if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), apforest->forest, apforest->cLocalStart, pforest->forest, 0, &preCoarseToFine, NULL)); 9000a96aa3bSJed Brown } else if (numValuesGlobal) { 9010a96aa3bSJed Brown p4est_t *p4est = pforest->forest; 9020a96aa3bSJed Brown PetscInt *cellFlags; 9030a96aa3bSJed Brown DMForestAdaptivityStrategy strategy; 9040a96aa3bSJed Brown PetscSF cellSF; 9050a96aa3bSJed Brown PetscInt c, cStart, cEnd; 9060a96aa3bSJed Brown PetscBool adaptAny; 9070a96aa3bSJed Brown 9089566063dSJacob Faibussowitsch PetscCall(DMForestGetMaximumRefinement(dm, &ctx.maxLevel)); 9099566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &ctx.minLevel)); 9109566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityStrategy(dm, &strategy)); 9119566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(strategy, "any", 3, &adaptAny)); 9129566063dSJacob Faibussowitsch PetscCall(DMForestGetCellChart(adaptFrom, &cStart, &cEnd)); 9139566063dSJacob Faibussowitsch PetscCall(DMForestGetCellSF(adaptFrom, &cellSF)); 9149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEnd - cStart, &cellFlags)); 9159566063dSJacob Faibussowitsch for (c = cStart; c < cEnd; c++) PetscCall(DMLabelGetValue(adaptLabel, c, &cellFlags[c - cStart])); 9160a96aa3bSJed Brown if (cellSF) { 9170a96aa3bSJed Brown if (adaptAny) { 9189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MAX)); 9199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MAX)); 9200a96aa3bSJed Brown } else { 9219566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MIN)); 9229566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MIN)); 9230a96aa3bSJed Brown } 9240a96aa3bSJed Brown } 9250a96aa3bSJed Brown for (t = flt, count = cLocalStart; t <= llt; t++) { 9260a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4est->trees->array)[t]); 9270a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count, i; 9280a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 9290a96aa3bSJed Brown 9300a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 9310a96aa3bSJed Brown p4est_quadrant_t *q = &quads[i]; 9320a96aa3bSJed Brown q->p.user_int = cellFlags[count++]; 9330a96aa3bSJed Brown } 9340a96aa3bSJed Brown } 9359566063dSJacob Faibussowitsch PetscCall(PetscFree(cellFlags)); 9360a96aa3bSJed Brown 9370a96aa3bSJed Brown pforest->forest->user_pointer = (void *)&ctx; 938792fecdfSBarry Smith if (adaptAny) PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_flag_any, pforest_init_determine)); 939792fecdfSBarry Smith else PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_flag_all, pforest_init_determine)); 940792fecdfSBarry Smith PetscCallP4est(p4est_refine, (pforest->forest, 0, pforest_refine_flag, NULL)); 9410a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 942792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 94348a46eb9SPierre Jolivet if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), apforest->forest, apforest->cLocalStart, pforest->forest, 0, &preCoarseToFine, &coarseToPreFine)); 9440a96aa3bSJed Brown } 9450a96aa3bSJed Brown for (t = flt, count = cLocalStart; t <= llt; t++) { 9460a96aa3bSJed Brown p4est_tree_t *atree = &(((p4est_tree_t *)apforest->forest->trees->array)[t]); 9470a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)pforest->forest->trees->array)[t]); 9480a96aa3bSJed Brown PetscInt anumQuads = (PetscInt)atree->quadrants.elem_count, i; 9490a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 9500a96aa3bSJed Brown p4est_quadrant_t *aquads = (p4est_quadrant_t *)atree->quadrants.array; 9510a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 9520a96aa3bSJed Brown 9530a96aa3bSJed Brown if (anumQuads != numQuads) { 9540a96aa3bSJed Brown ctx.anyChange = PETSC_TRUE; 9550a96aa3bSJed Brown } else { 9560a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 9570a96aa3bSJed Brown p4est_quadrant_t *aq = &aquads[i]; 9580a96aa3bSJed Brown p4est_quadrant_t *q = &quads[i]; 9590a96aa3bSJed Brown 9600a96aa3bSJed Brown if (aq->level != q->level) { 9610a96aa3bSJed Brown ctx.anyChange = PETSC_TRUE; 9620a96aa3bSJed Brown break; 9630a96aa3bSJed Brown } 9640a96aa3bSJed Brown } 9650a96aa3bSJed Brown } 966ad540459SPierre Jolivet if (ctx.anyChange) break; 9670a96aa3bSJed Brown } 9680a96aa3bSJed Brown } 9690a96aa3bSJed Brown { 9700a96aa3bSJed Brown PetscInt numLabels, l; 9710a96aa3bSJed Brown 9729566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(adaptFrom, &numLabels)); 9730a96aa3bSJed Brown for (l = 0; l < numLabels; l++) { 9740a96aa3bSJed Brown PetscBool isDepth, isCellType, isGhost, isVTK; 9750a96aa3bSJed Brown DMLabel label, labelNew; 9760a96aa3bSJed Brown PetscInt defVal; 9770a96aa3bSJed Brown const char *name; 9780a96aa3bSJed Brown 9799566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(adaptFrom, l, &name)); 9809566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(adaptFrom, l, &label)); 9819566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 9820a96aa3bSJed Brown if (isDepth) continue; 9839566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &isCellType)); 9840a96aa3bSJed Brown if (isCellType) continue; 9859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "ghost", &isGhost)); 9860a96aa3bSJed Brown if (isGhost) continue; 9879566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "vtk", &isVTK)); 9880a96aa3bSJed Brown if (isVTK) continue; 9899566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 9909566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &labelNew)); 9919566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defVal)); 9929566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(labelNew, defVal)); 9930a96aa3bSJed Brown } 9940a96aa3bSJed Brown } 9950a96aa3bSJed Brown } else { /* initial */ 9960a96aa3bSJed Brown PetscInt initLevel, minLevel; 99766c0a4b5SToby Isaac #if defined(PETSC_HAVE_MPIUNI) 99866c0a4b5SToby Isaac sc_MPI_Comm comm = sc_MPI_COMM_WORLD; 99966c0a4b5SToby Isaac #else 100066c0a4b5SToby Isaac MPI_Comm comm = PetscObjectComm((PetscObject)dm); 100166c0a4b5SToby Isaac #endif 10020a96aa3bSJed Brown 10039566063dSJacob Faibussowitsch PetscCall(DMForestGetInitialRefinement(dm, &initLevel)); 10049566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &minLevel)); 10059371c9d4SSatish Balay PetscCallP4estReturn(pforest->forest, p4est_new_ext, 10069371c9d4SSatish Balay (comm, pforest->topo->conn, 0, /* minimum number of quadrants per processor */ 10070a96aa3bSJed Brown initLevel, /* level of refinement */ 10080a96aa3bSJed Brown 1, /* uniform refinement */ 10090a96aa3bSJed Brown 0, /* we don't allocate any per quadrant data */ 10100a96aa3bSJed Brown NULL, /* there is no special quadrant initialization */ 10110a96aa3bSJed Brown (void *)dm)); /* this dm is the user context */ 10120a96aa3bSJed Brown 10130a96aa3bSJed Brown if (initLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE; 10140a96aa3bSJed Brown if (dm->setfromoptionscalled) { 10150a96aa3bSJed Brown PetscBool flgPattern, flgFractal; 10160a96aa3bSJed Brown PetscInt corner = 0; 10170a96aa3bSJed Brown PetscInt corners[P4EST_CHILDREN], ncorner = P4EST_CHILDREN; 10180a96aa3bSJed Brown PetscReal likelihood = 1. / P4EST_DIM; 10190a96aa3bSJed Brown PetscInt pattern; 10200a96aa3bSJed Brown const char *prefix; 10210a96aa3bSJed Brown 10229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 10239566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEList(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_pattern", DMRefinePatternName, PATTERN_COUNT, &pattern, &flgPattern)); 10249566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_corner", &corner, NULL)); 10259566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_fractal_corners", corners, &ncorner, &flgFractal)); 10269566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_hash_likelihood", &likelihood, NULL)); 10270a96aa3bSJed Brown 10280a96aa3bSJed Brown if (flgPattern) { 10290a96aa3bSJed Brown DMRefinePatternCtx *ctx; 10300a96aa3bSJed Brown PetscInt maxLevel; 10310a96aa3bSJed Brown 10329566063dSJacob Faibussowitsch PetscCall(DMForestGetMaximumRefinement(dm, &maxLevel)); 10334dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&ctx)); 10340a96aa3bSJed Brown ctx->maxLevel = PetscMin(maxLevel, P4EST_QMAXLEVEL); 10350a96aa3bSJed Brown if (initLevel + ctx->maxLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE; 10360a96aa3bSJed Brown switch (pattern) { 10370a96aa3bSJed Brown case PATTERN_HASH: 10380a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Hash; 10390a96aa3bSJed Brown ctx->hashLikelihood = likelihood; 10400a96aa3bSJed Brown break; 10410a96aa3bSJed Brown case PATTERN_CORNER: 10420a96aa3bSJed Brown ctx->corner = corner; 10430a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Corner; 10440a96aa3bSJed Brown break; 1045d71ae5a4SJacob Faibussowitsch case PATTERN_CENTER: 1046d71ae5a4SJacob Faibussowitsch ctx->refine_fn = DMRefinePattern_Center; 1047d71ae5a4SJacob Faibussowitsch break; 10480a96aa3bSJed Brown case PATTERN_FRACTAL: 10490a96aa3bSJed Brown if (flgFractal) { 10500a96aa3bSJed Brown PetscInt i; 10510a96aa3bSJed Brown 10520a96aa3bSJed Brown for (i = 0; i < ncorner; i++) ctx->fractal[corners[i]] = PETSC_TRUE; 10530a96aa3bSJed Brown } else { 10540a96aa3bSJed Brown #if !defined(P4_TO_P8) 10550a96aa3bSJed Brown ctx->fractal[0] = ctx->fractal[1] = ctx->fractal[2] = PETSC_TRUE; 10560a96aa3bSJed Brown #else 10570a96aa3bSJed Brown ctx->fractal[0] = ctx->fractal[3] = ctx->fractal[5] = ctx->fractal[6] = PETSC_TRUE; 10580a96aa3bSJed Brown #endif 10590a96aa3bSJed Brown } 10600a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Fractal; 10610a96aa3bSJed Brown break; 1062d71ae5a4SJacob Faibussowitsch default: 1063d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Not a valid refinement pattern"); 10640a96aa3bSJed Brown } 10650a96aa3bSJed Brown 10660a96aa3bSJed Brown pforest->forest->user_pointer = (void *)ctx; 1067792fecdfSBarry Smith PetscCallP4est(p4est_refine, (pforest->forest, 1, ctx->refine_fn, NULL)); 1068792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 10699566063dSJacob Faibussowitsch PetscCall(PetscFree(ctx)); 10700a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 10710a96aa3bSJed Brown } 10720a96aa3bSJed Brown } 10730a96aa3bSJed Brown } 10740a96aa3bSJed Brown if (pforest->coarsen_hierarchy) { 10750a96aa3bSJed Brown PetscInt initLevel, currLevel, minLevel; 10760a96aa3bSJed Brown 10779566063dSJacob Faibussowitsch PetscCall(DMPforestGetRefinementLevel(dm, &currLevel)); 10789566063dSJacob Faibussowitsch PetscCall(DMForestGetInitialRefinement(dm, &initLevel)); 10799566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &minLevel)); 1080156acca6SStefano Zampini /* allow using PCMG and SNESFAS */ 1081156acca6SStefano Zampini PetscCall(DMSetRefineLevel(dm, currLevel - minLevel)); 10820a96aa3bSJed Brown if (currLevel > minLevel) { 10830a96aa3bSJed Brown DM_Forest_pforest *coarse_pforest; 10840a96aa3bSJed Brown DMLabel coarsen; 10850a96aa3bSJed Brown DM coarseDM; 10860a96aa3bSJed Brown 10879566063dSJacob Faibussowitsch PetscCall(DMForestTemplate(dm, MPI_COMM_NULL, &coarseDM)); 10889566063dSJacob Faibussowitsch PetscCall(DMForestSetAdaptivityPurpose(coarseDM, DM_ADAPT_COARSEN)); 10899566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "coarsen", &coarsen)); 10909566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(coarsen, DM_ADAPT_COARSEN)); 10919566063dSJacob Faibussowitsch PetscCall(DMForestSetAdaptivityLabel(coarseDM, coarsen)); 10929566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&coarsen)); 10939566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, coarseDM)); 10949566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)coarseDM)); 10950a96aa3bSJed Brown initLevel = currLevel == initLevel ? initLevel - 1 : initLevel; 10969566063dSJacob Faibussowitsch PetscCall(DMForestSetInitialRefinement(coarseDM, initLevel)); 10979566063dSJacob Faibussowitsch PetscCall(DMForestSetMinimumRefinement(coarseDM, minLevel)); 10980a96aa3bSJed Brown coarse_pforest = (DM_Forest_pforest *)((DM_Forest *)coarseDM->data)->data; 10990a96aa3bSJed Brown coarse_pforest->coarsen_hierarchy = PETSC_TRUE; 11000a96aa3bSJed Brown } 11010a96aa3bSJed Brown } 11020a96aa3bSJed Brown 11030a96aa3bSJed Brown { /* repartitioning and overlap */ 11040a96aa3bSJed Brown PetscMPIInt size, rank; 11050a96aa3bSJed Brown 11069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 11079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 1108217f96c1SStefano Zampini if (size > 1 && (pforest->partition_for_coarsening || forest->cellWeights || forest->weightCapacity != 1. || forest->weightsFactor != 1.)) { 11090a96aa3bSJed Brown PetscBool copyForest = PETSC_FALSE; 11100a96aa3bSJed Brown p4est_t *forest_copy = NULL; 11110a96aa3bSJed Brown p4est_gloidx_t shipped = 0; 11120a96aa3bSJed Brown 11130a96aa3bSJed Brown if (preCoarseToFine || coarseToPreFine) copyForest = PETSC_TRUE; 1114792fecdfSBarry Smith if (copyForest) PetscCallP4estReturn(forest_copy, p4est_copy, (pforest->forest, 0)); 11150a96aa3bSJed Brown 11160a96aa3bSJed Brown if (!forest->cellWeights && forest->weightCapacity == 1. && forest->weightsFactor == 1.) { 1117792fecdfSBarry Smith PetscCallP4estReturn(shipped, p4est_partition_ext, (pforest->forest, (int)pforest->partition_for_coarsening, NULL)); 11180a96aa3bSJed Brown } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Non-uniform partition cases not implemented yet"); 11190a96aa3bSJed Brown if (shipped) ctx.anyChange = PETSC_TRUE; 11200a96aa3bSJed Brown if (forest_copy) { 11210a96aa3bSJed Brown if (preCoarseToFine || coarseToPreFine) { 11220a96aa3bSJed Brown PetscSF repartSF; /* repartSF has roots in the old partition */ 11230a96aa3bSJed Brown PetscInt pStart = -1, pEnd = -1, p; 11240a96aa3bSJed Brown PetscInt numRoots, numLeaves; 11250a96aa3bSJed Brown PetscSFNode *repartRoots; 11260a96aa3bSJed Brown p4est_gloidx_t postStart = pforest->forest->global_first_quadrant[rank]; 11270a96aa3bSJed Brown p4est_gloidx_t postEnd = pforest->forest->global_first_quadrant[rank + 1]; 11280a96aa3bSJed Brown p4est_gloidx_t partOffset = postStart; 11290a96aa3bSJed Brown 11300a96aa3bSJed Brown numRoots = (PetscInt)(forest_copy->global_first_quadrant[rank + 1] - forest_copy->global_first_quadrant[rank]); 11310a96aa3bSJed Brown numLeaves = (PetscInt)(postEnd - postStart); 11329566063dSJacob Faibussowitsch PetscCall(DMPforestComputeOverlappingRanks(size, rank, pforest->forest, forest_copy, &pStart, &pEnd)); 11339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((PetscInt)pforest->forest->local_num_quadrants, &repartRoots)); 11340a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 11350a96aa3bSJed Brown p4est_gloidx_t preStart = forest_copy->global_first_quadrant[p]; 11360a96aa3bSJed Brown p4est_gloidx_t preEnd = forest_copy->global_first_quadrant[p + 1]; 11370a96aa3bSJed Brown 11380a96aa3bSJed Brown if (preEnd == preStart) continue; 113908401ef6SPierre Jolivet PetscCheck(preStart <= postStart, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Bad partition overlap computation"); 11400a96aa3bSJed Brown preEnd = preEnd > postEnd ? postEnd : preEnd; 11416497c311SBarry Smith for (p4est_gloidx_t q = partOffset; q < preEnd; q++) { 11420a96aa3bSJed Brown repartRoots[q - postStart].rank = p; 11436497c311SBarry Smith repartRoots[q - postStart].index = (PetscInt)(partOffset - preStart); 11440a96aa3bSJed Brown } 11450a96aa3bSJed Brown partOffset = preEnd; 11460a96aa3bSJed Brown } 11479566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &repartSF)); 11489566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(repartSF, numRoots, numLeaves, NULL, PETSC_OWN_POINTER, repartRoots, PETSC_OWN_POINTER)); 11499566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(repartSF)); 11500a96aa3bSJed Brown if (preCoarseToFine) { 11510a96aa3bSJed Brown PetscSF repartSFembed, preCoarseToFineNew; 11520a96aa3bSJed Brown PetscInt nleaves; 11530a96aa3bSJed Brown const PetscInt *leaves; 11540a96aa3bSJed Brown 11559566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(preCoarseToFine)); 11569566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(preCoarseToFine, NULL, &nleaves, &leaves, NULL)); 11570a96aa3bSJed Brown if (leaves) { 11589566063dSJacob Faibussowitsch PetscCall(PetscSFCreateEmbeddedRootSF(repartSF, nleaves, leaves, &repartSFembed)); 11590a96aa3bSJed Brown } else { 11600a96aa3bSJed Brown repartSFembed = repartSF; 11619566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)repartSFembed)); 11620a96aa3bSJed Brown } 11639566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(preCoarseToFine, repartSFembed, &preCoarseToFineNew)); 11649566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&preCoarseToFine)); 11659566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&repartSFembed)); 11660a96aa3bSJed Brown preCoarseToFine = preCoarseToFineNew; 11670a96aa3bSJed Brown } 11680a96aa3bSJed Brown if (coarseToPreFine) { 11690a96aa3bSJed Brown PetscSF repartSFinv, coarseToPreFineNew; 11700a96aa3bSJed Brown 11719566063dSJacob Faibussowitsch PetscCall(PetscSFCreateInverseSF(repartSF, &repartSFinv)); 11729566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(repartSFinv, coarseToPreFine, &coarseToPreFineNew)); 11739566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseToPreFine)); 11749566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&repartSFinv)); 11750a96aa3bSJed Brown coarseToPreFine = coarseToPreFineNew; 11760a96aa3bSJed Brown } 11779566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&repartSF)); 11780a96aa3bSJed Brown } 1179792fecdfSBarry Smith PetscCallP4est(p4est_destroy, (forest_copy)); 11800a96aa3bSJed Brown } 11810a96aa3bSJed Brown } 11820a96aa3bSJed Brown if (size > 1) { 11830a96aa3bSJed Brown PetscInt overlap; 11840a96aa3bSJed Brown 11859566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm, &overlap)); 11860a96aa3bSJed Brown 11870a96aa3bSJed Brown if (adaptFrom) { 11880a96aa3bSJed Brown PetscInt aoverlap; 11890a96aa3bSJed Brown 11909566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(adaptFrom, &aoverlap)); 1191ad540459SPierre Jolivet if (aoverlap != overlap) ctx.anyChange = PETSC_TRUE; 11920a96aa3bSJed Brown } 11930a96aa3bSJed Brown 11940a96aa3bSJed Brown if (overlap > 0) { 11950a96aa3bSJed Brown PetscInt i, cLocalStart; 11960a96aa3bSJed Brown PetscInt cEnd; 11970a96aa3bSJed Brown PetscSF preCellSF = NULL, cellSF = NULL; 11980a96aa3bSJed Brown 1199792fecdfSBarry Smith PetscCallP4estReturn(pforest->ghost, p4est_ghost_new, (pforest->forest, P4EST_CONNECT_FULL)); 1200792fecdfSBarry Smith PetscCallP4estReturn(pforest->lnodes, p4est_lnodes_new, (pforest->forest, pforest->ghost, -P4EST_DIM)); 1201792fecdfSBarry Smith PetscCallP4est(p4est_ghost_support_lnodes, (pforest->forest, pforest->lnodes, pforest->ghost)); 1202792fecdfSBarry Smith for (i = 1; i < overlap; i++) PetscCallP4est(p4est_ghost_expand_by_lnodes, (pforest->forest, pforest->lnodes, pforest->ghost)); 12030a96aa3bSJed Brown 12040a96aa3bSJed Brown cLocalStart = pforest->cLocalStart = pforest->ghost->proc_offsets[rank]; 12050a96aa3bSJed Brown cEnd = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[size]; 12060a96aa3bSJed Brown 12070a96aa3bSJed Brown /* shift sfs by cLocalStart, expand by cell SFs */ 12080a96aa3bSJed Brown if (preCoarseToFine || coarseToPreFine) { 12099566063dSJacob Faibussowitsch if (adaptFrom) PetscCall(DMForestGetCellSF(adaptFrom, &preCellSF)); 12100a96aa3bSJed Brown dm->setupcalled = PETSC_TRUE; 12119566063dSJacob Faibussowitsch PetscCall(DMForestGetCellSF(dm, &cellSF)); 12120a96aa3bSJed Brown } 12130a96aa3bSJed Brown if (preCoarseToFine) { 12140a96aa3bSJed Brown PetscSF preCoarseToFineNew; 12150a96aa3bSJed Brown PetscInt nleaves, nroots, *leavesNew, i, nleavesNew; 12160a96aa3bSJed Brown const PetscInt *leaves; 12170a96aa3bSJed Brown const PetscSFNode *remotes; 12180a96aa3bSJed Brown PetscSFNode *remotesAll; 12190a96aa3bSJed Brown 12209566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(preCoarseToFine)); 12219566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(preCoarseToFine, &nroots, &nleaves, &leaves, &remotes)); 12229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEnd, &remotesAll)); 12230a96aa3bSJed Brown for (i = 0; i < cEnd; i++) { 12240a96aa3bSJed Brown remotesAll[i].rank = -1; 12250a96aa3bSJed Brown remotesAll[i].index = -1; 12260a96aa3bSJed Brown } 12270a96aa3bSJed Brown for (i = 0; i < nleaves; i++) remotesAll[(leaves ? leaves[i] : i) + cLocalStart] = remotes[i]; 12289566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(cellSF)); 12296497c311SBarry Smith PetscCall(PetscSFBcastBegin(cellSF, MPIU_SF_NODE, remotesAll, remotesAll, MPI_REPLACE)); 12306497c311SBarry Smith PetscCall(PetscSFBcastEnd(cellSF, MPIU_SF_NODE, remotesAll, remotesAll, MPI_REPLACE)); 12310a96aa3bSJed Brown nleavesNew = 0; 12320a96aa3bSJed Brown for (i = 0; i < nleaves; i++) { 12330a96aa3bSJed Brown if (remotesAll[i].rank >= 0) nleavesNew++; 12340a96aa3bSJed Brown } 12359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleavesNew, &leavesNew)); 12360a96aa3bSJed Brown nleavesNew = 0; 12370a96aa3bSJed Brown for (i = 0; i < nleaves; i++) { 12380a96aa3bSJed Brown if (remotesAll[i].rank >= 0) { 12390a96aa3bSJed Brown leavesNew[nleavesNew] = i; 12400a96aa3bSJed Brown if (i > nleavesNew) remotesAll[nleavesNew] = remotesAll[i]; 12410a96aa3bSJed Brown nleavesNew++; 12420a96aa3bSJed Brown } 12430a96aa3bSJed Brown } 12449566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &preCoarseToFineNew)); 12450a96aa3bSJed Brown if (nleavesNew < cEnd) { 12469566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(preCoarseToFineNew, nroots, nleavesNew, leavesNew, PETSC_OWN_POINTER, remotesAll, PETSC_COPY_VALUES)); 12470a96aa3bSJed Brown } else { /* all cells are leaves */ 12489566063dSJacob Faibussowitsch PetscCall(PetscFree(leavesNew)); 12499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(preCoarseToFineNew, nroots, nleavesNew, NULL, PETSC_OWN_POINTER, remotesAll, PETSC_COPY_VALUES)); 12500a96aa3bSJed Brown } 12519566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesAll)); 12529566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&preCoarseToFine)); 12530a96aa3bSJed Brown preCoarseToFine = preCoarseToFineNew; 12540a96aa3bSJed Brown preCoarseToFine = preCoarseToFineNew; 12550a96aa3bSJed Brown } 12560a96aa3bSJed Brown if (coarseToPreFine) { 12570a96aa3bSJed Brown PetscSF coarseToPreFineNew; 12580a96aa3bSJed Brown PetscInt nleaves, nroots, i, nleavesCellSF, nleavesExpanded, *leavesNew; 12590a96aa3bSJed Brown const PetscInt *leaves; 12600a96aa3bSJed Brown const PetscSFNode *remotes; 12610a96aa3bSJed Brown PetscSFNode *remotesNew, *remotesNewRoot, *remotesExpanded; 12620a96aa3bSJed Brown 12639566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(coarseToPreFine)); 12649566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseToPreFine, &nroots, &nleaves, &leaves, &remotes)); 12659566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(preCellSF, NULL, &nleavesCellSF, NULL, NULL)); 12669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &remotesNewRoot)); 12679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &remotesNew)); 12680a96aa3bSJed Brown for (i = 0; i < nroots; i++) { 12690a96aa3bSJed Brown remotesNewRoot[i].rank = rank; 12700a96aa3bSJed Brown remotesNewRoot[i].index = i + cLocalStart; 12710a96aa3bSJed Brown } 12726497c311SBarry Smith PetscCall(PetscSFBcastBegin(coarseToPreFine, MPIU_SF_NODE, remotesNewRoot, remotesNew, MPI_REPLACE)); 12736497c311SBarry Smith PetscCall(PetscSFBcastEnd(coarseToPreFine, MPIU_SF_NODE, remotesNewRoot, remotesNew, MPI_REPLACE)); 12749566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesNewRoot)); 12759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleavesCellSF, &remotesExpanded)); 12760a96aa3bSJed Brown for (i = 0; i < nleavesCellSF; i++) { 12770a96aa3bSJed Brown remotesExpanded[i].rank = -1; 12780a96aa3bSJed Brown remotesExpanded[i].index = -1; 12790a96aa3bSJed Brown } 12800a96aa3bSJed Brown for (i = 0; i < nleaves; i++) remotesExpanded[leaves ? leaves[i] : i] = remotesNew[i]; 12819566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesNew)); 12826497c311SBarry Smith PetscCall(PetscSFBcastBegin(preCellSF, MPIU_SF_NODE, remotesExpanded, remotesExpanded, MPI_REPLACE)); 12836497c311SBarry Smith PetscCall(PetscSFBcastEnd(preCellSF, MPIU_SF_NODE, remotesExpanded, remotesExpanded, MPI_REPLACE)); 12840a96aa3bSJed Brown 12850a96aa3bSJed Brown nleavesExpanded = 0; 12860a96aa3bSJed Brown for (i = 0; i < nleavesCellSF; i++) { 12870a96aa3bSJed Brown if (remotesExpanded[i].rank >= 0) nleavesExpanded++; 12880a96aa3bSJed Brown } 12899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleavesExpanded, &leavesNew)); 12900a96aa3bSJed Brown nleavesExpanded = 0; 12910a96aa3bSJed Brown for (i = 0; i < nleavesCellSF; i++) { 12920a96aa3bSJed Brown if (remotesExpanded[i].rank >= 0) { 12930a96aa3bSJed Brown leavesNew[nleavesExpanded] = i; 12940a96aa3bSJed Brown if (i > nleavesExpanded) remotesExpanded[nleavesExpanded] = remotes[i]; 12950a96aa3bSJed Brown nleavesExpanded++; 12960a96aa3bSJed Brown } 12970a96aa3bSJed Brown } 12989566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &coarseToPreFineNew)); 12990a96aa3bSJed Brown if (nleavesExpanded < nleavesCellSF) { 13009566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(coarseToPreFineNew, cEnd, nleavesExpanded, leavesNew, PETSC_OWN_POINTER, remotesExpanded, PETSC_COPY_VALUES)); 13010a96aa3bSJed Brown } else { 13029566063dSJacob Faibussowitsch PetscCall(PetscFree(leavesNew)); 13039566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(coarseToPreFineNew, cEnd, nleavesExpanded, NULL, PETSC_OWN_POINTER, remotesExpanded, PETSC_COPY_VALUES)); 13040a96aa3bSJed Brown } 13059566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesExpanded)); 13069566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseToPreFine)); 13070a96aa3bSJed Brown coarseToPreFine = coarseToPreFineNew; 13080a96aa3bSJed Brown } 13090a96aa3bSJed Brown } 13100a96aa3bSJed Brown } 13110a96aa3bSJed Brown } 13120a96aa3bSJed Brown forest->preCoarseToFine = preCoarseToFine; 13130a96aa3bSJed Brown forest->coarseToPreFine = coarseToPreFine; 13140a96aa3bSJed Brown dm->setupcalled = PETSC_TRUE; 1315d72c4dc2SStefano Zampini PetscCall(MPIU_Allreduce(&ctx.anyChange, &pforest->adaptivitySuccess, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 13169566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, NULL)); 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13180a96aa3bSJed Brown } 13190a96aa3bSJed Brown 13200a96aa3bSJed Brown #define DMForestGetAdaptivitySuccess_pforest _append_pforest(DMForestGetAdaptivitySuccess) 1321d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestGetAdaptivitySuccess_pforest(DM dm, PetscBool *success) 1322d71ae5a4SJacob Faibussowitsch { 13230a96aa3bSJed Brown DM_Forest *forest; 13240a96aa3bSJed Brown DM_Forest_pforest *pforest; 13250a96aa3bSJed Brown 13260a96aa3bSJed Brown PetscFunctionBegin; 13270a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 13280a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 13290a96aa3bSJed Brown *success = pforest->adaptivitySuccess; 13303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13310a96aa3bSJed Brown } 13320a96aa3bSJed Brown 13330a96aa3bSJed Brown #define DMView_ASCII_pforest _append_pforest(DMView_ASCII) 1334d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_ASCII_pforest(PetscObject odm, PetscViewer viewer) 1335d71ae5a4SJacob Faibussowitsch { 13360a96aa3bSJed Brown DM dm = (DM)odm; 13370a96aa3bSJed Brown 13380a96aa3bSJed Brown PetscFunctionBegin; 13390a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13400a96aa3bSJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 13419566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 13420a96aa3bSJed Brown switch (viewer->format) { 13430a96aa3bSJed Brown case PETSC_VIEWER_DEFAULT: 13449371c9d4SSatish Balay case PETSC_VIEWER_ASCII_INFO: { 13450a96aa3bSJed Brown PetscInt dim; 13460a96aa3bSJed Brown const char *name; 13470a96aa3bSJed Brown 13489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)dm, &name)); 13499566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 135063a3b9bcSJacob Faibussowitsch if (name) PetscCall(PetscViewerASCIIPrintf(viewer, "Forest %s in %" PetscInt_FMT " dimensions:\n", name, dim)); 135163a3b9bcSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Forest in %" PetscInt_FMT " dimensions:\n", dim)); 1352f4d061e9SPierre Jolivet } /* fall through */ 13530a96aa3bSJed Brown case PETSC_VIEWER_ASCII_INFO_DETAIL: 13549371c9d4SSatish Balay case PETSC_VIEWER_LOAD_BALANCE: { 13550a96aa3bSJed Brown DM plex; 13560a96aa3bSJed Brown 13579566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 13589566063dSJacob Faibussowitsch PetscCall(DMView(plex, viewer)); 13599371c9d4SSatish Balay } break; 1360d71ae5a4SJacob Faibussowitsch default: 1361d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]); 13620a96aa3bSJed Brown } 13633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13640a96aa3bSJed Brown } 13650a96aa3bSJed Brown 13660a96aa3bSJed Brown #define DMView_VTK_pforest _append_pforest(DMView_VTK) 1367d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_VTK_pforest(PetscObject odm, PetscViewer viewer) 1368d71ae5a4SJacob Faibussowitsch { 13690a96aa3bSJed Brown DM dm = (DM)odm; 13700a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 13710a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 13720a96aa3bSJed Brown PetscBool isvtk; 13730a96aa3bSJed Brown PetscReal vtkScale = 1. - PETSC_MACHINE_EPSILON; 13740a96aa3bSJed Brown PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; 13750a96aa3bSJed Brown const char *name; 13760a96aa3bSJed Brown char *filenameStrip = NULL; 13770a96aa3bSJed Brown PetscBool hasExt; 13780a96aa3bSJed Brown size_t len; 13790a96aa3bSJed Brown p4est_geometry_t *geom; 13800a96aa3bSJed Brown 13810a96aa3bSJed Brown PetscFunctionBegin; 13820a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13830a96aa3bSJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 13849566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 13850a96aa3bSJed Brown geom = pforest->topo->geom; 13869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERVTK, &isvtk)); 138728b400f6SJacob Faibussowitsch PetscCheck(isvtk, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Cannot use viewer type %s", ((PetscObject)viewer)->type_name); 13880a96aa3bSJed Brown switch (viewer->format) { 13890a96aa3bSJed Brown case PETSC_VIEWER_VTK_VTU: 139028b400f6SJacob Faibussowitsch PetscCheck(pforest->forest, PetscObjectComm(odm), PETSC_ERR_ARG_WRONG, "DM has not been setup with a valid forest"); 13910a96aa3bSJed Brown name = vtk->filename; 13929566063dSJacob Faibussowitsch PetscCall(PetscStrlen(name, &len)); 13939566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp(name + len - 4, ".vtu", &hasExt)); 13940a96aa3bSJed Brown if (hasExt) { 13959566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &filenameStrip)); 13960a96aa3bSJed Brown filenameStrip[len - 4] = '\0'; 13970a96aa3bSJed Brown name = filenameStrip; 13980a96aa3bSJed Brown } 1399792fecdfSBarry Smith if (!pforest->topo->geom) PetscCallP4estReturn(geom, p4est_geometry_new_connectivity, (pforest->topo->conn)); 14000a96aa3bSJed Brown { 14010a96aa3bSJed Brown p4est_vtk_context_t *pvtk; 14020a96aa3bSJed Brown int footerr; 14030a96aa3bSJed Brown 1404792fecdfSBarry Smith PetscCallP4estReturn(pvtk, p4est_vtk_context_new, (pforest->forest, name)); 1405792fecdfSBarry Smith PetscCallP4est(p4est_vtk_context_set_geom, (pvtk, geom)); 1406792fecdfSBarry Smith PetscCallP4est(p4est_vtk_context_set_scale, (pvtk, (double)vtkScale)); 1407792fecdfSBarry Smith PetscCallP4estReturn(pvtk, p4est_vtk_write_header, (pvtk)); 140828b400f6SJacob Faibussowitsch PetscCheck(pvtk, PetscObjectComm((PetscObject)odm), PETSC_ERR_LIB, P4EST_STRING "_vtk_write_header() failed"); 14099371c9d4SSatish Balay PetscCallP4estReturn(pvtk, p4est_vtk_write_cell_dataf, 14109371c9d4SSatish Balay (pvtk, 1, /* write tree */ 14110a96aa3bSJed Brown 1, /* write level */ 14120a96aa3bSJed Brown 1, /* write rank */ 14130a96aa3bSJed Brown 0, /* do not wrap rank */ 14140a96aa3bSJed Brown 0, /* no scalar fields */ 14150a96aa3bSJed Brown 0, /* no vector fields */ 14160a96aa3bSJed Brown pvtk)); 141728b400f6SJacob Faibussowitsch PetscCheck(pvtk, PetscObjectComm((PetscObject)odm), PETSC_ERR_LIB, P4EST_STRING "_vtk_write_cell_dataf() failed"); 1418792fecdfSBarry Smith PetscCallP4estReturn(footerr, p4est_vtk_write_footer, (pvtk)); 141928b400f6SJacob Faibussowitsch PetscCheck(!footerr, PetscObjectComm((PetscObject)odm), PETSC_ERR_LIB, P4EST_STRING "_vtk_write_footer() failed"); 14200a96aa3bSJed Brown } 1421792fecdfSBarry Smith if (!pforest->topo->geom) PetscCallP4est(p4est_geometry_destroy, (geom)); 14229566063dSJacob Faibussowitsch PetscCall(PetscFree(filenameStrip)); 14230a96aa3bSJed Brown break; 1424d71ae5a4SJacob Faibussowitsch default: 1425d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]); 14260a96aa3bSJed Brown } 14273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14280a96aa3bSJed Brown } 14290a96aa3bSJed Brown 14300a96aa3bSJed Brown #define DMView_HDF5_pforest _append_pforest(DMView_HDF5) 1431d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_HDF5_pforest(DM dm, PetscViewer viewer) 1432d71ae5a4SJacob Faibussowitsch { 14330a96aa3bSJed Brown DM plex; 14340a96aa3bSJed Brown 14350a96aa3bSJed Brown PetscFunctionBegin; 14369566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 14379566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 14389566063dSJacob Faibussowitsch PetscCall(DMView(plex, viewer)); 14393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14400a96aa3bSJed Brown } 14410a96aa3bSJed Brown 14420a96aa3bSJed Brown #define DMView_GLVis_pforest _append_pforest(DMView_GLVis) 1443d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_GLVis_pforest(DM dm, PetscViewer viewer) 1444d71ae5a4SJacob Faibussowitsch { 14450a96aa3bSJed Brown DM plex; 14460a96aa3bSJed Brown 14470a96aa3bSJed Brown PetscFunctionBegin; 14489566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 14499566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 14509566063dSJacob Faibussowitsch PetscCall(DMView(plex, viewer)); 14513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14520a96aa3bSJed Brown } 14530a96aa3bSJed Brown 14540a96aa3bSJed Brown #define DMView_pforest _append_pforest(DMView) 1455d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_pforest(DM dm, PetscViewer viewer) 1456d71ae5a4SJacob Faibussowitsch { 14570a96aa3bSJed Brown PetscBool isascii, isvtk, ishdf5, isglvis; 14580a96aa3bSJed Brown 14590a96aa3bSJed Brown PetscFunctionBegin; 14600a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14610a96aa3bSJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 14629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 14639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERVTK, &isvtk)); 14649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 14659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERGLVIS, &isglvis)); 14660a96aa3bSJed Brown if (isascii) { 14679566063dSJacob Faibussowitsch PetscCall(DMView_ASCII_pforest((PetscObject)dm, viewer)); 14680a96aa3bSJed Brown } else if (isvtk) { 14699566063dSJacob Faibussowitsch PetscCall(DMView_VTK_pforest((PetscObject)dm, viewer)); 14700a96aa3bSJed Brown } else if (ishdf5) { 14719566063dSJacob Faibussowitsch PetscCall(DMView_HDF5_pforest(dm, viewer)); 14720a96aa3bSJed Brown } else if (isglvis) { 14739566063dSJacob Faibussowitsch PetscCall(DMView_GLVis_pforest(dm, viewer)); 14740a96aa3bSJed Brown } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Viewer not supported (not VTK, HDF5, or GLVis)"); 14753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14760a96aa3bSJed Brown } 14770a96aa3bSJed Brown 1478d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t *conn, PetscInt **tree_face_to_uniq) 1479d71ae5a4SJacob Faibussowitsch { 14800a96aa3bSJed Brown PetscInt *ttf, f, t, g, count; 14810a96aa3bSJed Brown PetscInt numFacets; 14820a96aa3bSJed Brown 14830a96aa3bSJed Brown PetscFunctionBegin; 14840a96aa3bSJed Brown numFacets = conn->num_trees * P4EST_FACES; 14859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFacets, &ttf)); 14860a96aa3bSJed Brown for (f = 0; f < numFacets; f++) ttf[f] = -1; 14870a96aa3bSJed Brown for (g = 0, count = 0, t = 0; t < conn->num_trees; t++) { 14880a96aa3bSJed Brown for (f = 0; f < P4EST_FACES; f++, g++) { 14890a96aa3bSJed Brown if (ttf[g] == -1) { 14900a96aa3bSJed Brown PetscInt ng; 14910a96aa3bSJed Brown 14920a96aa3bSJed Brown ttf[g] = count++; 14930a96aa3bSJed Brown ng = conn->tree_to_tree[g] * P4EST_FACES + (conn->tree_to_face[g] % P4EST_FACES); 14940a96aa3bSJed Brown ttf[ng] = ttf[g]; 14950a96aa3bSJed Brown } 14960a96aa3bSJed Brown } 14970a96aa3bSJed Brown } 14980a96aa3bSJed Brown *tree_face_to_uniq = ttf; 14993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15000a96aa3bSJed Brown } 15010a96aa3bSJed Brown 1502d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateConnectivity_pforest(DM dm, p4est_connectivity_t **connOut, PetscInt **tree_face_to_uniq) 1503d71ae5a4SJacob Faibussowitsch { 15040a96aa3bSJed Brown p4est_topidx_t numTrees, numVerts, numCorns, numCtt; 15050a96aa3bSJed Brown PetscSection ctt; 15060a96aa3bSJed Brown #if defined(P4_TO_P8) 15070a96aa3bSJed Brown p4est_topidx_t numEdges, numEtt; 15080a96aa3bSJed Brown PetscSection ett; 15090a96aa3bSJed Brown PetscInt eStart, eEnd, e, ettSize; 15100a96aa3bSJed Brown PetscInt vertOff = 1 + P4EST_FACES + P8EST_EDGES; 15110a96aa3bSJed Brown PetscInt edgeOff = 1 + P4EST_FACES; 15120a96aa3bSJed Brown #else 15130a96aa3bSJed Brown PetscInt vertOff = 1 + P4EST_FACES; 15140a96aa3bSJed Brown #endif 15150a96aa3bSJed Brown p4est_connectivity_t *conn; 15160a96aa3bSJed Brown PetscInt cStart, cEnd, c, vStart, vEnd, v, fStart, fEnd, f; 15170a96aa3bSJed Brown PetscInt *star = NULL, *closure = NULL, closureSize, starSize, cttSize; 15180a96aa3bSJed Brown PetscInt *ttf; 15190a96aa3bSJed Brown 15200a96aa3bSJed Brown PetscFunctionBegin; 15210a96aa3bSJed Brown /* 1: count objects, allocate */ 15229566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 15239566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(cEnd - cStart, &numTrees)); 15240a96aa3bSJed Brown numVerts = P4EST_CHILDREN * numTrees; 15259566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 15269566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(vEnd - vStart, &numCorns)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &ctt)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ctt, vStart, vEnd)); 15290a96aa3bSJed Brown for (v = vStart; v < vEnd; v++) { 15300a96aa3bSJed Brown PetscInt s; 15310a96aa3bSJed Brown 15329566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 15330a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 15340a96aa3bSJed Brown PetscInt p = star[2 * s]; 15350a96aa3bSJed Brown 15360a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 15370a96aa3bSJed Brown /* we want to count every time cell p references v, so we see how many times it comes up in the closure. This 15380a96aa3bSJed Brown * only protects against periodicity problems */ 15399566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 154063a3b9bcSJacob Faibussowitsch PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Cell %" PetscInt_FMT " with wrong closure size %" PetscInt_FMT " != %d", p, closureSize, P4EST_INSUL); 15410a96aa3bSJed Brown for (c = 0; c < P4EST_CHILDREN; c++) { 15420a96aa3bSJed Brown PetscInt cellVert = closure[2 * (c + vertOff)]; 15430a96aa3bSJed Brown 15441dca8a05SBarry Smith PetscCheck(cellVert >= vStart && cellVert < vEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure: vertices"); 154548a46eb9SPierre Jolivet if (cellVert == v) PetscCall(PetscSectionAddDof(ctt, v, 1)); 15460a96aa3bSJed Brown } 15479566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 15480a96aa3bSJed Brown } 15490a96aa3bSJed Brown } 15509566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 15510a96aa3bSJed Brown } 15529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ctt)); 15539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(ctt, &cttSize)); 15549566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(cttSize, &numCtt)); 15550a96aa3bSJed Brown #if defined(P4_TO_P8) 15569566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, P4EST_DIM - 1, &eStart, &eEnd)); 15579566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(eEnd - eStart, &numEdges)); 15589566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &ett)); 15599566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ett, eStart, eEnd)); 15600a96aa3bSJed Brown for (e = eStart; e < eEnd; e++) { 15610a96aa3bSJed Brown PetscInt s; 15620a96aa3bSJed Brown 15639566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star)); 15640a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 15650a96aa3bSJed Brown PetscInt p = star[2 * s]; 15660a96aa3bSJed Brown 15670a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 15680a96aa3bSJed Brown /* we want to count every time cell p references e, so we see how many times it comes up in the closure. This 15690a96aa3bSJed Brown * only protects against periodicity problems */ 15709566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 157108401ef6SPierre Jolivet PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Cell with wrong closure size"); 15720a96aa3bSJed Brown for (c = 0; c < P8EST_EDGES; c++) { 15730a96aa3bSJed Brown PetscInt cellEdge = closure[2 * (c + edgeOff)]; 15740a96aa3bSJed Brown 15751dca8a05SBarry Smith PetscCheck(cellEdge >= eStart && cellEdge < eEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure: edges"); 157648a46eb9SPierre Jolivet if (cellEdge == e) PetscCall(PetscSectionAddDof(ett, e, 1)); 15770a96aa3bSJed Brown } 15789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 15790a96aa3bSJed Brown } 15800a96aa3bSJed Brown } 15819566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star)); 15820a96aa3bSJed Brown } 15839566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ett)); 15849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(ett, &ettSize)); 15859566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(ettSize, &numEtt)); 15860a96aa3bSJed Brown 15870a96aa3bSJed Brown /* This routine allocates space for the arrays, which we fill below */ 1588792fecdfSBarry Smith PetscCallP4estReturn(conn, p8est_connectivity_new, (numVerts, numTrees, numEdges, numEtt, numCorns, numCtt)); 15890a96aa3bSJed Brown #else 1590792fecdfSBarry Smith PetscCallP4estReturn(conn, p4est_connectivity_new, (numVerts, numTrees, numCorns, numCtt)); 15910a96aa3bSJed Brown #endif 15920a96aa3bSJed Brown 15930a96aa3bSJed Brown /* 2: visit every face, determine neighboring cells(trees) */ 15949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 1, &fStart, &fEnd)); 15959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((cEnd - cStart) * P4EST_FACES, &ttf)); 15960a96aa3bSJed Brown for (f = fStart; f < fEnd; f++) { 15970a96aa3bSJed Brown PetscInt numSupp, s; 15980a96aa3bSJed Brown PetscInt myFace[2] = {-1, -1}; 1599*1690c2aeSBarry Smith PetscInt myOrnt[2] = {PETSC_INT_MIN, PETSC_INT_MIN}; 16000a96aa3bSJed Brown const PetscInt *supp; 16010a96aa3bSJed Brown 16029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &numSupp)); 16031dca8a05SBarry Smith PetscCheck(numSupp == 1 || numSupp == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "point %" PetscInt_FMT " has facet with %" PetscInt_FMT " sides: must be 1 or 2 (boundary or conformal)", f, numSupp); 16049566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, f, &supp)); 16050a96aa3bSJed Brown 16060a96aa3bSJed Brown for (s = 0; s < numSupp; s++) { 16070a96aa3bSJed Brown PetscInt p = supp[s]; 16080a96aa3bSJed Brown 16090a96aa3bSJed Brown if (p >= cEnd) { 16100a96aa3bSJed Brown numSupp--; 16110a96aa3bSJed Brown if (s) supp = &supp[1 - s]; 16120a96aa3bSJed Brown break; 16130a96aa3bSJed Brown } 16140a96aa3bSJed Brown } 16150a96aa3bSJed Brown for (s = 0; s < numSupp; s++) { 16160a96aa3bSJed Brown PetscInt p = supp[s], i; 16170a96aa3bSJed Brown PetscInt numCone; 16180a96aa3bSJed Brown DMPolytopeType ct; 16190a96aa3bSJed Brown const PetscInt *cone; 16200a96aa3bSJed Brown const PetscInt *ornt; 1621*1690c2aeSBarry Smith PetscInt orient = PETSC_INT_MIN; 16220a96aa3bSJed Brown 16239566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &numCone)); 162463a3b9bcSJacob Faibussowitsch PetscCheck(numCone == P4EST_FACES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "cell %" PetscInt_FMT " has %" PetscInt_FMT " facets, expect %d", p, numCone, P4EST_FACES); 16259566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 16269566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[0], &ct)); 16279566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &ornt)); 16280a96aa3bSJed Brown for (i = 0; i < P4EST_FACES; i++) { 16290a96aa3bSJed Brown if (cone[i] == f) { 16300a96aa3bSJed Brown orient = DMPolytopeConvertNewOrientation_Internal(ct, ornt[i]); 16310a96aa3bSJed Brown break; 16320a96aa3bSJed Brown } 16330a96aa3bSJed Brown } 163463a3b9bcSJacob Faibussowitsch PetscCheck(i < P4EST_FACES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "cell %" PetscInt_FMT " faced %" PetscInt_FMT " mismatch", p, f); 16350a96aa3bSJed Brown if (p < cStart || p >= cEnd) { 16360a96aa3bSJed Brown DMPolytopeType ct; 16379566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 163863a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "cell %" PetscInt_FMT " (%s) should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, DMPolytopeTypes[ct], cStart, cEnd); 16390a96aa3bSJed Brown } 16400a96aa3bSJed Brown ttf[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = f - fStart; 16410a96aa3bSJed Brown if (numSupp == 1) { 16420a96aa3bSJed Brown /* boundary faces indicated by self reference */ 16430a96aa3bSJed Brown conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = p - cStart; 16440a96aa3bSJed Brown conn->tree_to_face[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = (int8_t)PetscFaceToP4estFace[i]; 16450a96aa3bSJed Brown } else { 16460a96aa3bSJed Brown const PetscInt N = P4EST_CHILDREN / 2; 16470a96aa3bSJed Brown 16480a96aa3bSJed Brown conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = supp[1 - s] - cStart; 16490a96aa3bSJed Brown myFace[s] = PetscFaceToP4estFace[i]; 16500a96aa3bSJed Brown /* get the orientation of cell p in p4est-type closure to facet f, by composing the p4est-closure to 16510a96aa3bSJed Brown * petsc-closure permutation and the petsc-closure to facet orientation */ 16520a96aa3bSJed Brown myOrnt[s] = DihedralCompose(N, orient, DMPolytopeConvertNewOrientation_Internal(ct, P4estFaceToPetscOrnt[myFace[s]])); 16530a96aa3bSJed Brown } 16540a96aa3bSJed Brown } 16550a96aa3bSJed Brown if (numSupp == 2) { 16560a96aa3bSJed Brown for (s = 0; s < numSupp; s++) { 16570a96aa3bSJed Brown PetscInt p = supp[s]; 16580a96aa3bSJed Brown PetscInt orntAtoB; 16590a96aa3bSJed Brown PetscInt p4estOrient; 16600a96aa3bSJed Brown const PetscInt N = P4EST_CHILDREN / 2; 16610a96aa3bSJed Brown 16620a96aa3bSJed Brown /* composing the forward permutation with the other cell's inverse permutation gives the self-to-neighbor 16630a96aa3bSJed Brown * permutation of this cell-facet's cone */ 16640a96aa3bSJed Brown orntAtoB = DihedralCompose(N, DihedralInvert(N, myOrnt[1 - s]), myOrnt[s]); 16650a96aa3bSJed Brown 16660a96aa3bSJed Brown /* convert cone-description permutation (i.e., edges around facet) to cap-description permutation (i.e., 16670a96aa3bSJed Brown * vertices around facet) */ 16680a96aa3bSJed Brown #if !defined(P4_TO_P8) 16690a96aa3bSJed Brown p4estOrient = orntAtoB < 0 ? -(orntAtoB + 1) : orntAtoB; 16700a96aa3bSJed Brown #else 16710a96aa3bSJed Brown { 16720a96aa3bSJed Brown PetscInt firstVert = orntAtoB < 0 ? ((-orntAtoB) % N) : orntAtoB; 16730a96aa3bSJed Brown PetscInt p4estFirstVert = firstVert < 2 ? firstVert : (firstVert ^ 1); 16740a96aa3bSJed Brown 16750a96aa3bSJed Brown /* swap bits */ 16760a96aa3bSJed Brown p4estOrient = ((myFace[s] <= myFace[1 - s]) || (orntAtoB < 0)) ? p4estFirstVert : ((p4estFirstVert >> 1) | ((p4estFirstVert & 1) << 1)); 16770a96aa3bSJed Brown } 16780a96aa3bSJed Brown #endif 16790a96aa3bSJed Brown /* encode neighbor face and orientation in tree_to_face per p4est_connectivity standard (see 16800a96aa3bSJed Brown * p4est_connectivity.h, p8est_connectivity.h) */ 16816497c311SBarry Smith conn->tree_to_face[P4EST_FACES * (p - cStart) + myFace[s]] = (int8_t)(myFace[1 - s] + p4estOrient * P4EST_FACES); 16820a96aa3bSJed Brown } 16830a96aa3bSJed Brown } 16840a96aa3bSJed Brown } 16850a96aa3bSJed Brown 16860a96aa3bSJed Brown #if defined(P4_TO_P8) 16870a96aa3bSJed Brown /* 3: visit every edge */ 16880a96aa3bSJed Brown conn->ett_offset[0] = 0; 16890a96aa3bSJed Brown for (e = eStart; e < eEnd; e++) { 16900a96aa3bSJed Brown PetscInt off, s; 16910a96aa3bSJed Brown 16929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(ett, e, &off)); 16930a96aa3bSJed Brown conn->ett_offset[e - eStart] = (p4est_topidx_t)off; 16949566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star)); 16950a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 16960a96aa3bSJed Brown PetscInt p = star[2 * s]; 16970a96aa3bSJed Brown 16980a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 16999566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 170008401ef6SPierre Jolivet PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure"); 17010a96aa3bSJed Brown for (c = 0; c < P8EST_EDGES; c++) { 17020a96aa3bSJed Brown PetscInt cellEdge = closure[2 * (c + edgeOff)]; 17030a96aa3bSJed Brown PetscInt cellOrnt = closure[2 * (c + edgeOff) + 1]; 17040a96aa3bSJed Brown DMPolytopeType ct; 17050a96aa3bSJed Brown 17069566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cellEdge, &ct)); 17070a96aa3bSJed Brown cellOrnt = DMPolytopeConvertNewOrientation_Internal(ct, cellOrnt); 17080a96aa3bSJed Brown if (cellEdge == e) { 17090a96aa3bSJed Brown PetscInt p4estEdge = PetscEdgeToP4estEdge[c]; 17100a96aa3bSJed Brown PetscInt totalOrient; 17110a96aa3bSJed Brown 17120a96aa3bSJed Brown /* compose p4est-closure to petsc-closure permutation and petsc-closure to edge orientation */ 17130a96aa3bSJed Brown totalOrient = DihedralCompose(2, cellOrnt, DMPolytopeConvertNewOrientation_Internal(DM_POLYTOPE_SEGMENT, P4estEdgeToPetscOrnt[p4estEdge])); 17140a96aa3bSJed Brown /* p4est orientations are positive: -2 => 1, -1 => 0 */ 17150a96aa3bSJed Brown totalOrient = (totalOrient < 0) ? -(totalOrient + 1) : totalOrient; 17160a96aa3bSJed Brown conn->edge_to_tree[off] = (p4est_locidx_t)(p - cStart); 1717d5b43468SJose E. Roman /* encode cell-edge and orientation in edge_to_edge per p8est_connectivity standard (see 17180a96aa3bSJed Brown * p8est_connectivity.h) */ 17196497c311SBarry Smith conn->edge_to_edge[off++] = (int8_t)(p4estEdge + P8EST_EDGES * totalOrient); 17200a96aa3bSJed Brown conn->tree_to_edge[P8EST_EDGES * (p - cStart) + p4estEdge] = e - eStart; 17210a96aa3bSJed Brown } 17220a96aa3bSJed Brown } 17239566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 17240a96aa3bSJed Brown } 17250a96aa3bSJed Brown } 17269566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star)); 17270a96aa3bSJed Brown } 17289566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&ett)); 17290a96aa3bSJed Brown #endif 17300a96aa3bSJed Brown 17310a96aa3bSJed Brown /* 4: visit every vertex */ 17320a96aa3bSJed Brown conn->ctt_offset[0] = 0; 17330a96aa3bSJed Brown for (v = vStart; v < vEnd; v++) { 17340a96aa3bSJed Brown PetscInt off, s; 17350a96aa3bSJed Brown 17369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(ctt, v, &off)); 17370a96aa3bSJed Brown conn->ctt_offset[v - vStart] = (p4est_topidx_t)off; 17389566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 17390a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 17400a96aa3bSJed Brown PetscInt p = star[2 * s]; 17410a96aa3bSJed Brown 17420a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 17439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 174408401ef6SPierre Jolivet PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure"); 17450a96aa3bSJed Brown for (c = 0; c < P4EST_CHILDREN; c++) { 17460a96aa3bSJed Brown PetscInt cellVert = closure[2 * (c + vertOff)]; 17470a96aa3bSJed Brown 17480a96aa3bSJed Brown if (cellVert == v) { 17490a96aa3bSJed Brown PetscInt p4estVert = PetscVertToP4estVert[c]; 17500a96aa3bSJed Brown 17510a96aa3bSJed Brown conn->corner_to_tree[off] = (p4est_locidx_t)(p - cStart); 17520a96aa3bSJed Brown conn->corner_to_corner[off++] = (int8_t)p4estVert; 17530a96aa3bSJed Brown conn->tree_to_corner[P4EST_CHILDREN * (p - cStart) + p4estVert] = v - vStart; 17540a96aa3bSJed Brown } 17550a96aa3bSJed Brown } 17569566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 17570a96aa3bSJed Brown } 17580a96aa3bSJed Brown } 17599566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 17600a96aa3bSJed Brown } 17619566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&ctt)); 17620a96aa3bSJed Brown 17630a96aa3bSJed Brown /* 5: Compute the coordinates */ 17640a96aa3bSJed Brown { 17650a96aa3bSJed Brown PetscInt coordDim; 17660a96aa3bSJed Brown 17679566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 17686858538eSMatthew G. Knepley PetscCall(DMGetCoordinatesLocalSetUp(dm)); 17690a96aa3bSJed Brown for (c = cStart; c < cEnd; c++) { 17700a96aa3bSJed Brown PetscInt dof; 17716858538eSMatthew G. Knepley PetscBool isDG; 17720a96aa3bSJed Brown PetscScalar *cellCoords = NULL; 17736858538eSMatthew G. Knepley const PetscScalar *array; 17740a96aa3bSJed Brown 17756858538eSMatthew G. Knepley PetscCall(DMPlexGetCellCoordinates(dm, c, &isDG, &dof, &array, &cellCoords)); 17766858538eSMatthew G. Knepley PetscCheck(dof == P4EST_CHILDREN * coordDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Need coordinates at the corners: (dof) %" PetscInt_FMT " != %d * %" PetscInt_FMT " (sdim)", dof, P4EST_CHILDREN, coordDim); 17770a96aa3bSJed Brown for (v = 0; v < P4EST_CHILDREN; v++) { 17780a96aa3bSJed Brown PetscInt i, lim = PetscMin(3, coordDim); 17790a96aa3bSJed Brown PetscInt p4estVert = PetscVertToP4estVert[v]; 17800a96aa3bSJed Brown 17810a96aa3bSJed Brown conn->tree_to_vertex[P4EST_CHILDREN * (c - cStart) + v] = P4EST_CHILDREN * (c - cStart) + v; 17820a96aa3bSJed Brown /* p4est vertices are always embedded in R^3 */ 17830a96aa3bSJed Brown for (i = 0; i < 3; i++) conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = 0.; 17840a96aa3bSJed Brown for (i = 0; i < lim; i++) conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = PetscRealPart(cellCoords[v * coordDim + i]); 17850a96aa3bSJed Brown } 17866858538eSMatthew G. Knepley PetscCall(DMPlexRestoreCellCoordinates(dm, c, &isDG, &dof, &array, &cellCoords)); 17870a96aa3bSJed Brown } 17880a96aa3bSJed Brown } 17890a96aa3bSJed Brown 17900a96aa3bSJed Brown #if defined(P4EST_ENABLE_DEBUG) 179108401ef6SPierre Jolivet PetscCheck(p4est_connectivity_is_valid(conn), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Plex to p4est conversion failed"); 17920a96aa3bSJed Brown #endif 17930a96aa3bSJed Brown 17940a96aa3bSJed Brown *connOut = conn; 17950a96aa3bSJed Brown 17960a96aa3bSJed Brown *tree_face_to_uniq = ttf; 17973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17980a96aa3bSJed Brown } 17990a96aa3bSJed Brown 1800d71ae5a4SJacob Faibussowitsch static PetscErrorCode locidx_to_PetscInt(sc_array_t *array) 1801d71ae5a4SJacob Faibussowitsch { 18020a96aa3bSJed Brown sc_array_t *newarray; 18030a96aa3bSJed Brown size_t zz, count = array->elem_count; 18040a96aa3bSJed Brown 18050a96aa3bSJed Brown PetscFunctionBegin; 180608401ef6SPierre Jolivet PetscCheck(array->elem_size == sizeof(p4est_locidx_t), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Wrong locidx size"); 18070a96aa3bSJed Brown 18083ba16761SJacob Faibussowitsch if (sizeof(p4est_locidx_t) == sizeof(PetscInt)) PetscFunctionReturn(PETSC_SUCCESS); 18090a96aa3bSJed Brown 18100a96aa3bSJed Brown newarray = sc_array_new_size(sizeof(PetscInt), array->elem_count); 18110a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 18120a96aa3bSJed Brown p4est_locidx_t il = *((p4est_locidx_t *)sc_array_index(array, zz)); 18130a96aa3bSJed Brown PetscInt *ip = (PetscInt *)sc_array_index(newarray, zz); 18140a96aa3bSJed Brown 18150a96aa3bSJed Brown *ip = (PetscInt)il; 18160a96aa3bSJed Brown } 18170a96aa3bSJed Brown 18180a96aa3bSJed Brown sc_array_reset(array); 18190a96aa3bSJed Brown sc_array_init_size(array, sizeof(PetscInt), count); 18200a96aa3bSJed Brown sc_array_copy(array, newarray); 18210a96aa3bSJed Brown sc_array_destroy(newarray); 18223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18230a96aa3bSJed Brown } 18240a96aa3bSJed Brown 1825d71ae5a4SJacob Faibussowitsch static PetscErrorCode coords_double_to_PetscScalar(sc_array_t *array, PetscInt dim) 1826d71ae5a4SJacob Faibussowitsch { 18270a96aa3bSJed Brown sc_array_t *newarray; 18280a96aa3bSJed Brown size_t zz, count = array->elem_count; 18290a96aa3bSJed Brown 18300a96aa3bSJed Brown PetscFunctionBegin; 18311dca8a05SBarry Smith PetscCheck(array->elem_size == 3 * sizeof(double), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Wrong coordinate size"); 18320a96aa3bSJed Brown #if !defined(PETSC_USE_COMPLEX) 18333ba16761SJacob Faibussowitsch if (sizeof(double) == sizeof(PetscScalar) && dim == 3) PetscFunctionReturn(PETSC_SUCCESS); 18340a96aa3bSJed Brown #endif 18350a96aa3bSJed Brown 18360a96aa3bSJed Brown newarray = sc_array_new_size(dim * sizeof(PetscScalar), array->elem_count); 18370a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 18380a96aa3bSJed Brown int i; 18390a96aa3bSJed Brown double *id = (double *)sc_array_index(array, zz); 18400a96aa3bSJed Brown PetscScalar *ip = (PetscScalar *)sc_array_index(newarray, zz); 18410a96aa3bSJed Brown 18420a96aa3bSJed Brown for (i = 0; i < dim; i++) ip[i] = 0.; 18430a96aa3bSJed Brown for (i = 0; i < PetscMin(dim, 3); i++) ip[i] = (PetscScalar)id[i]; 18440a96aa3bSJed Brown } 18450a96aa3bSJed Brown 18460a96aa3bSJed Brown sc_array_reset(array); 18470a96aa3bSJed Brown sc_array_init_size(array, dim * sizeof(PetscScalar), count); 18480a96aa3bSJed Brown sc_array_copy(array, newarray); 18490a96aa3bSJed Brown sc_array_destroy(newarray); 18503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18510a96aa3bSJed Brown } 18520a96aa3bSJed Brown 1853d71ae5a4SJacob Faibussowitsch static PetscErrorCode locidx_pair_to_PetscSFNode(sc_array_t *array) 1854d71ae5a4SJacob Faibussowitsch { 18550a96aa3bSJed Brown sc_array_t *newarray; 18560a96aa3bSJed Brown size_t zz, count = array->elem_count; 18570a96aa3bSJed Brown 18580a96aa3bSJed Brown PetscFunctionBegin; 18591dca8a05SBarry Smith PetscCheck(array->elem_size == 2 * sizeof(p4est_locidx_t), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Wrong locidx size"); 18600a96aa3bSJed Brown 18610a96aa3bSJed Brown newarray = sc_array_new_size(sizeof(PetscSFNode), array->elem_count); 18620a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 18630a96aa3bSJed Brown p4est_locidx_t *il = (p4est_locidx_t *)sc_array_index(array, zz); 18640a96aa3bSJed Brown PetscSFNode *ip = (PetscSFNode *)sc_array_index(newarray, zz); 18650a96aa3bSJed Brown 18660a96aa3bSJed Brown ip->rank = (PetscInt)il[0]; 18670a96aa3bSJed Brown ip->index = (PetscInt)il[1]; 18680a96aa3bSJed Brown } 18690a96aa3bSJed Brown 18700a96aa3bSJed Brown sc_array_reset(array); 18710a96aa3bSJed Brown sc_array_init_size(array, sizeof(PetscSFNode), count); 18720a96aa3bSJed Brown sc_array_copy(array, newarray); 18730a96aa3bSJed Brown sc_array_destroy(newarray); 18743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18750a96aa3bSJed Brown } 18760a96aa3bSJed Brown 1877d71ae5a4SJacob Faibussowitsch static PetscErrorCode P4estToPlex_Local(p4est_t *p4est, DM *plex) 1878d71ae5a4SJacob Faibussowitsch { 18790a96aa3bSJed Brown PetscFunctionBegin; 18800a96aa3bSJed Brown { 18810a96aa3bSJed Brown sc_array_t *points_per_dim = sc_array_new(sizeof(p4est_locidx_t)); 18820a96aa3bSJed Brown sc_array_t *cone_sizes = sc_array_new(sizeof(p4est_locidx_t)); 18830a96aa3bSJed Brown sc_array_t *cones = sc_array_new(sizeof(p4est_locidx_t)); 18840a96aa3bSJed Brown sc_array_t *cone_orientations = sc_array_new(sizeof(p4est_locidx_t)); 18850a96aa3bSJed Brown sc_array_t *coords = sc_array_new(3 * sizeof(double)); 18860a96aa3bSJed Brown sc_array_t *children = sc_array_new(sizeof(p4est_locidx_t)); 18870a96aa3bSJed Brown sc_array_t *parents = sc_array_new(sizeof(p4est_locidx_t)); 18880a96aa3bSJed Brown sc_array_t *childids = sc_array_new(sizeof(p4est_locidx_t)); 18890a96aa3bSJed Brown sc_array_t *leaves = sc_array_new(sizeof(p4est_locidx_t)); 18900a96aa3bSJed Brown sc_array_t *remotes = sc_array_new(2 * sizeof(p4est_locidx_t)); 18910a96aa3bSJed Brown p4est_locidx_t first_local_quad; 18920a96aa3bSJed Brown 1893792fecdfSBarry Smith PetscCallP4est(p4est_get_plex_data, (p4est, P4EST_CONNECT_FULL, 0, &first_local_quad, points_per_dim, cone_sizes, cones, cone_orientations, coords, children, parents, childids, leaves, remotes)); 18940a96aa3bSJed Brown 18959566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(points_per_dim)); 18969566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_sizes)); 18979566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cones)); 18989566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_orientations)); 18999566063dSJacob Faibussowitsch PetscCall(coords_double_to_PetscScalar(coords, P4EST_DIM)); 19000a96aa3bSJed Brown 19019566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(PETSC_COMM_SELF, plex)); 19029566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*plex, P4EST_DIM)); 19039566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromDAG(*plex, P4EST_DIM, (PetscInt *)points_per_dim->array, (PetscInt *)cone_sizes->array, (PetscInt *)cones->array, (PetscInt *)cone_orientations->array, (PetscScalar *)coords->array)); 19049566063dSJacob Faibussowitsch PetscCall(DMPlexConvertOldOrientations_Internal(*plex)); 19050a96aa3bSJed Brown sc_array_destroy(points_per_dim); 19060a96aa3bSJed Brown sc_array_destroy(cone_sizes); 19070a96aa3bSJed Brown sc_array_destroy(cones); 19080a96aa3bSJed Brown sc_array_destroy(cone_orientations); 19090a96aa3bSJed Brown sc_array_destroy(coords); 19100a96aa3bSJed Brown sc_array_destroy(children); 19110a96aa3bSJed Brown sc_array_destroy(parents); 19120a96aa3bSJed Brown sc_array_destroy(childids); 19130a96aa3bSJed Brown sc_array_destroy(leaves); 19140a96aa3bSJed Brown sc_array_destroy(remotes); 19150a96aa3bSJed Brown } 19163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19170a96aa3bSJed Brown } 19180a96aa3bSJed Brown 19190a96aa3bSJed Brown #define DMReferenceTreeGetChildSymmetry_pforest _append_pforest(DMReferenceTreeGetChildSymmetry) 1920d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMReferenceTreeGetChildSymmetry_pforest(DM dm, PetscInt parent, PetscInt parentOrientA, PetscInt childOrientA, PetscInt childA, PetscInt parentOrientB, PetscInt *childOrientB, PetscInt *childB) 1921d71ae5a4SJacob Faibussowitsch { 19220a96aa3bSJed Brown PetscInt coneSize, dStart, dEnd, vStart, vEnd, dim, ABswap, oAvert, oBvert, ABswapVert; 19230a96aa3bSJed Brown 19240a96aa3bSJed Brown PetscFunctionBegin; 19250a96aa3bSJed Brown if (parentOrientA == parentOrientB) { 19260a96aa3bSJed Brown if (childOrientB) *childOrientB = childOrientA; 19270a96aa3bSJed Brown if (childB) *childB = childA; 19283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19290a96aa3bSJed Brown } 19309566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 19316aad120cSJose E. Roman if (childA >= vStart && childA < vEnd) { /* vertices (always in the middle) are invariant under rotation */ 19320a96aa3bSJed Brown if (childOrientB) *childOrientB = 0; 19330a96aa3bSJed Brown if (childB) *childB = childA; 19343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19350a96aa3bSJed Brown } 19360a96aa3bSJed Brown for (dim = 0; dim < 3; dim++) { 19379566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dim, &dStart, &dEnd)); 19380a96aa3bSJed Brown if (parent >= dStart && parent <= dEnd) break; 19390a96aa3bSJed Brown } 194063a3b9bcSJacob Faibussowitsch PetscCheck(dim <= 2, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot perform child symmetry for %" PetscInt_FMT "-cells", dim); 194128b400f6SJacob Faibussowitsch PetscCheck(dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A vertex has no children"); 19420a96aa3bSJed Brown if (childA < dStart || childA >= dEnd) { /* a 1-cell in a 2-cell */ 19430a96aa3bSJed Brown /* this is a lower-dimensional child: bootstrap */ 19440a96aa3bSJed Brown PetscInt size, i, sA = -1, sB, sOrientB, sConeSize; 19450a96aa3bSJed Brown const PetscInt *supp, *coneA, *coneB, *oA, *oB; 19460a96aa3bSJed Brown 19479566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, childA, &size)); 19489566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, childA, &supp)); 19490a96aa3bSJed Brown 19500a96aa3bSJed Brown /* find a point sA in supp(childA) that has the same parent */ 19510a96aa3bSJed Brown for (i = 0; i < size; i++) { 19520a96aa3bSJed Brown PetscInt sParent; 19530a96aa3bSJed Brown 19540a96aa3bSJed Brown sA = supp[i]; 19550a96aa3bSJed Brown if (sA == parent) continue; 19569566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(dm, sA, &sParent, NULL)); 19570a96aa3bSJed Brown if (sParent == parent) break; 19580a96aa3bSJed Brown } 195908401ef6SPierre Jolivet PetscCheck(i != size, PETSC_COMM_SELF, PETSC_ERR_PLIB, "could not find support in children"); 19600a96aa3bSJed Brown /* find out which point sB is in an equivalent position to sA under 19610a96aa3bSJed Brown * parentOrientB */ 19629566063dSJacob Faibussowitsch PetscCall(DMReferenceTreeGetChildSymmetry_pforest(dm, parent, parentOrientA, 0, sA, parentOrientB, &sOrientB, &sB)); 19639566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, sA, &sConeSize)); 19649566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, sA, &coneA)); 19659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, sB, &coneB)); 19669566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, sA, &oA)); 19679566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, sB, &oB)); 19680a96aa3bSJed Brown /* step through the cone of sA in natural order */ 19690a96aa3bSJed Brown for (i = 0; i < sConeSize; i++) { 19700a96aa3bSJed Brown if (coneA[i] == childA) { 19710a96aa3bSJed Brown /* if childA is at position i in coneA, 19720a96aa3bSJed Brown * then we want the point that is at sOrientB*i in coneB */ 19730a96aa3bSJed Brown PetscInt j = (sOrientB >= 0) ? ((sOrientB + i) % sConeSize) : ((sConeSize - (sOrientB + 1) - i) % sConeSize); 19740a96aa3bSJed Brown if (childB) *childB = coneB[j]; 19750a96aa3bSJed Brown if (childOrientB) { 19760a96aa3bSJed Brown DMPolytopeType ct; 19770a96aa3bSJed Brown PetscInt oBtrue; 19780a96aa3bSJed Brown 19799566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, childA, &coneSize)); 19800a96aa3bSJed Brown /* compose sOrientB and oB[j] */ 19811dca8a05SBarry Smith PetscCheck(coneSize == 0 || coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Expected a vertex or an edge"); 19820a96aa3bSJed Brown ct = coneSize ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 19830a96aa3bSJed Brown /* we may have to flip an edge */ 19840a96aa3bSJed Brown oBtrue = (sOrientB >= 0) ? oB[j] : DMPolytopeTypeComposeOrientationInv(ct, -1, oB[j]); 19850a96aa3bSJed Brown oBtrue = DMPolytopeConvertNewOrientation_Internal(ct, oBtrue); 19860a96aa3bSJed Brown ABswap = DihedralSwap(coneSize, DMPolytopeConvertNewOrientation_Internal(ct, oA[i]), oBtrue); 19870a96aa3bSJed Brown *childOrientB = DihedralCompose(coneSize, childOrientA, ABswap); 19880a96aa3bSJed Brown } 19890a96aa3bSJed Brown break; 19900a96aa3bSJed Brown } 19910a96aa3bSJed Brown } 199208401ef6SPierre Jolivet PetscCheck(i != sConeSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "support cone mismatch"); 19933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19940a96aa3bSJed Brown } 19950a96aa3bSJed Brown /* get the cone size and symmetry swap */ 19969566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, parent, &coneSize)); 19970a96aa3bSJed Brown ABswap = DihedralSwap(coneSize, parentOrientA, parentOrientB); 19980a96aa3bSJed Brown if (dim == 2) { 19990a96aa3bSJed Brown /* orientations refer to cones: we want them to refer to vertices: 20000a96aa3bSJed Brown * if it's a rotation, they are the same, but if the order is reversed, a 20010a96aa3bSJed Brown * permutation that puts side i first does *not* put vertex i first */ 20020a96aa3bSJed Brown oAvert = (parentOrientA >= 0) ? parentOrientA : -((-parentOrientA % coneSize) + 1); 20030a96aa3bSJed Brown oBvert = (parentOrientB >= 0) ? parentOrientB : -((-parentOrientB % coneSize) + 1); 20040a96aa3bSJed Brown ABswapVert = DihedralSwap(coneSize, oAvert, oBvert); 20050a96aa3bSJed Brown } else { 20060a96aa3bSJed Brown oAvert = parentOrientA; 20070a96aa3bSJed Brown oBvert = parentOrientB; 20080a96aa3bSJed Brown ABswapVert = ABswap; 20090a96aa3bSJed Brown } 20100a96aa3bSJed Brown if (childB) { 20110a96aa3bSJed Brown /* assume that each child corresponds to a vertex, in the same order */ 20120a96aa3bSJed Brown PetscInt p, posA = -1, numChildren, i; 20130a96aa3bSJed Brown const PetscInt *children; 20140a96aa3bSJed Brown 20150a96aa3bSJed Brown /* count which position the child is in */ 20169566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, parent, &numChildren, &children)); 20170a96aa3bSJed Brown for (i = 0; i < numChildren; i++) { 20180a96aa3bSJed Brown p = children[i]; 20190a96aa3bSJed Brown if (p == childA) { 20200a96aa3bSJed Brown if (dim == 1) { 20210a96aa3bSJed Brown posA = i; 20220a96aa3bSJed Brown } else { /* 2D Morton to rotation */ 20230a96aa3bSJed Brown posA = (i & 2) ? (i ^ 1) : i; 20240a96aa3bSJed Brown } 20250a96aa3bSJed Brown break; 20260a96aa3bSJed Brown } 20270a96aa3bSJed Brown } 20280a96aa3bSJed Brown if (posA >= coneSize) { 20290a96aa3bSJed Brown SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find childA in children of parent"); 20300a96aa3bSJed Brown } else { 20310a96aa3bSJed Brown /* figure out position B by applying ABswapVert */ 20320a96aa3bSJed Brown PetscInt posB, childIdB; 20330a96aa3bSJed Brown 20340a96aa3bSJed Brown posB = (ABswapVert >= 0) ? ((ABswapVert + posA) % coneSize) : ((coneSize - (ABswapVert + 1) - posA) % coneSize); 20350a96aa3bSJed Brown if (dim == 1) { 20360a96aa3bSJed Brown childIdB = posB; 20370a96aa3bSJed Brown } else { /* 2D rotation to Morton */ 20380a96aa3bSJed Brown childIdB = (posB & 2) ? (posB ^ 1) : posB; 20390a96aa3bSJed Brown } 20400a96aa3bSJed Brown if (childB) *childB = children[childIdB]; 20410a96aa3bSJed Brown } 20420a96aa3bSJed Brown } 20430a96aa3bSJed Brown if (childOrientB) *childOrientB = DihedralCompose(coneSize, childOrientA, ABswap); 20443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20450a96aa3bSJed Brown } 20460a96aa3bSJed Brown 20470a96aa3bSJed Brown #define DMCreateReferenceTree_pforest _append_pforest(DMCreateReferenceTree) 2048d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateReferenceTree_pforest(MPI_Comm comm, DM *dm) 2049d71ae5a4SJacob Faibussowitsch { 20500a96aa3bSJed Brown p4est_connectivity_t *refcube; 20510a96aa3bSJed Brown p4est_t *root, *refined; 20520a96aa3bSJed Brown DM dmRoot, dmRefined; 20530a96aa3bSJed Brown DM_Plex *mesh; 20540a96aa3bSJed Brown PetscMPIInt rank; 205566c0a4b5SToby Isaac #if defined(PETSC_HAVE_MPIUNI) 205666c0a4b5SToby Isaac sc_MPI_Comm comm_self = sc_MPI_COMM_SELF; 205766c0a4b5SToby Isaac #else 205866c0a4b5SToby Isaac MPI_Comm comm_self = PETSC_COMM_SELF; 205966c0a4b5SToby Isaac #endif 20600a96aa3bSJed Brown 20610a96aa3bSJed Brown PetscFunctionBegin; 2062792fecdfSBarry Smith PetscCallP4estReturn(refcube, p4est_connectivity_new_byname, ("unit")); 20630a96aa3bSJed Brown { /* [-1,1]^d geometry */ 20640a96aa3bSJed Brown PetscInt i, j; 20650a96aa3bSJed Brown 20660a96aa3bSJed Brown for (i = 0; i < P4EST_CHILDREN; i++) { 20670a96aa3bSJed Brown for (j = 0; j < 3; j++) { 20680a96aa3bSJed Brown refcube->vertices[3 * i + j] *= 2.; 20690a96aa3bSJed Brown refcube->vertices[3 * i + j] -= 1.; 20700a96aa3bSJed Brown } 20710a96aa3bSJed Brown } 20720a96aa3bSJed Brown } 2073792fecdfSBarry Smith PetscCallP4estReturn(root, p4est_new, (comm_self, refcube, 0, NULL, NULL)); 2074792fecdfSBarry Smith PetscCallP4estReturn(refined, p4est_new_ext, (comm_self, refcube, 0, 1, 1, 0, NULL, NULL)); 20759566063dSJacob Faibussowitsch PetscCall(P4estToPlex_Local(root, &dmRoot)); 20769566063dSJacob Faibussowitsch PetscCall(P4estToPlex_Local(refined, &dmRefined)); 20770a96aa3bSJed Brown { 20780a96aa3bSJed Brown #if !defined(P4_TO_P8) 20790a96aa3bSJed Brown PetscInt nPoints = 25; 20809371c9d4SSatish Balay PetscInt perm[25] = {0, 1, 2, 3, 4, 12, 8, 14, 6, 9, 15, 5, 13, 10, 7, 11, 16, 22, 20, 24, 17, 21, 18, 23, 19}; 20819371c9d4SSatish Balay PetscInt ident[25] = {0, 0, 0, 0, 1, 1, 2, 2, 3, 3, 4, 4, 0, 0, 0, 0, 5, 6, 7, 8, 1, 2, 3, 4, 0}; 20820a96aa3bSJed Brown #else 20830a96aa3bSJed Brown PetscInt nPoints = 125; 20849371c9d4SSatish Balay PetscInt perm[125] = {0, 1, 2, 3, 4, 5, 6, 7, 8, 32, 16, 36, 24, 40, 12, 17, 37, 25, 41, 9, 33, 20, 26, 42, 13, 21, 27, 43, 10, 34, 18, 38, 28, 14, 19, 39, 29, 11, 35, 22, 30, 15, 20859371c9d4SSatish Balay 23, 31, 44, 84, 76, 92, 52, 86, 68, 94, 60, 78, 70, 96, 45, 85, 77, 93, 54, 72, 62, 74, 46, 80, 53, 87, 69, 95, 64, 82, 47, 81, 55, 73, 66, 48, 88, 56, 90, 61, 79, 71, 20869371c9d4SSatish Balay 97, 49, 89, 58, 63, 75, 50, 57, 91, 65, 83, 51, 59, 67, 98, 106, 110, 122, 114, 120, 118, 124, 99, 111, 115, 119, 100, 107, 116, 121, 101, 117, 102, 108, 112, 123, 103, 113, 104, 109, 105}; 20879371c9d4SSatish Balay PetscInt ident[125] = {0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7, 7, 8, 8, 9, 9, 10, 10, 11, 11, 12, 12, 13, 13, 14, 14, 15, 15, 16, 20889371c9d4SSatish Balay 16, 17, 17, 18, 18, 1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6, 0, 0, 0, 0, 0, 0, 19, 20, 21, 22, 23, 24, 25, 26, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 1, 2, 3, 4, 5, 6, 0}; 20890a96aa3bSJed Brown 20900a96aa3bSJed Brown #endif 20910a96aa3bSJed Brown IS permIS; 20920a96aa3bSJed Brown DM dmPerm; 20930a96aa3bSJed Brown 20949566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nPoints, perm, PETSC_USE_POINTER, &permIS)); 20959566063dSJacob Faibussowitsch PetscCall(DMPlexPermute(dmRefined, permIS, &dmPerm)); 20960a96aa3bSJed Brown if (dmPerm) { 20979566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRefined)); 20980a96aa3bSJed Brown dmRefined = dmPerm; 20990a96aa3bSJed Brown } 21009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&permIS)); 21010a96aa3bSJed Brown { 21020a96aa3bSJed Brown PetscInt p; 21039566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmRoot, "identity")); 21049566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmRefined, "identity")); 210548a46eb9SPierre Jolivet for (p = 0; p < P4EST_INSUL; p++) PetscCall(DMSetLabelValue(dmRoot, "identity", p, p)); 210648a46eb9SPierre Jolivet for (p = 0; p < nPoints; p++) PetscCall(DMSetLabelValue(dmRefined, "identity", p, ident[p])); 21070a96aa3bSJed Brown } 21080a96aa3bSJed Brown } 21099566063dSJacob Faibussowitsch PetscCall(DMPlexCreateReferenceTree_Union(dmRoot, dmRefined, "identity", dm)); 21100a96aa3bSJed Brown mesh = (DM_Plex *)(*dm)->data; 21110a96aa3bSJed Brown mesh->getchildsymmetry = DMReferenceTreeGetChildSymmetry_pforest; 21129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 21130a96aa3bSJed Brown if (rank == 0) { 21149566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmRoot, NULL, "-dm_p4est_ref_root_view")); 21159566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmRefined, NULL, "-dm_p4est_ref_refined_view")); 21169566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmRefined, NULL, "-dm_p4est_ref_tree_view")); 21170a96aa3bSJed Brown } 21189566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRefined)); 21199566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRoot)); 2120792fecdfSBarry Smith PetscCallP4est(p4est_destroy, (refined)); 2121792fecdfSBarry Smith PetscCallP4est(p4est_destroy, (root)); 2122792fecdfSBarry Smith PetscCallP4est(p4est_connectivity_destroy, (refcube)); 21233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21240a96aa3bSJed Brown } 21250a96aa3bSJed Brown 2126d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMShareDiscretization(DM dmA, DM dmB) 2127d71ae5a4SJacob Faibussowitsch { 21280a96aa3bSJed Brown void *ctx; 21290a96aa3bSJed Brown PetscInt num; 21300a96aa3bSJed Brown PetscReal val; 21310a96aa3bSJed Brown 21320a96aa3bSJed Brown PetscFunctionBegin; 21339566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dmA, &ctx)); 21349566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(dmB, ctx)); 21359566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dmA, dmB)); 21369566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dmA, &num, &val)); 21379566063dSJacob Faibussowitsch PetscCall(DMSetOutputSequenceNumber(dmB, num, val)); 21380a96aa3bSJed Brown if (dmB->localSection != dmA->localSection || dmB->globalSection != dmA->globalSection) { 21399566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(dmB)); 21409566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->localSection)); 2141f4f49eeaSPierre Jolivet PetscCall(PetscSectionDestroy(&dmB->localSection)); 21420a96aa3bSJed Brown dmB->localSection = dmA->localSection; 21439566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(dmB)); 21449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->globalSection)); 2145f4f49eeaSPierre Jolivet PetscCall(PetscSectionDestroy(&dmB->globalSection)); 21460a96aa3bSJed Brown dmB->globalSection = dmA->globalSection; 21479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.section)); 2148f4f49eeaSPierre Jolivet PetscCall(PetscSectionDestroy(&dmB->defaultConstraint.section)); 21493b8ba7d1SJed Brown dmB->defaultConstraint.section = dmA->defaultConstraint.section; 21509566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.mat)); 2151f4f49eeaSPierre Jolivet PetscCall(MatDestroy(&dmB->defaultConstraint.mat)); 21523b8ba7d1SJed Brown dmB->defaultConstraint.mat = dmA->defaultConstraint.mat; 21539566063dSJacob Faibussowitsch if (dmA->map) PetscCall(PetscLayoutReference(dmA->map, &dmB->map)); 21540a96aa3bSJed Brown } 21550a96aa3bSJed Brown if (dmB->sectionSF != dmA->sectionSF) { 21569566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->sectionSF)); 21579566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dmB->sectionSF)); 21580a96aa3bSJed Brown dmB->sectionSF = dmA->sectionSF; 21590a96aa3bSJed Brown } 21603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21610a96aa3bSJed Brown } 21620a96aa3bSJed Brown 21630a96aa3bSJed Brown /* Get an SF that broadcasts a coarse-cell covering of the local fine cells */ 2164d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetCellCoveringSF(MPI_Comm comm, p4est_t *p4estC, p4est_t *p4estF, PetscInt cStart, PetscInt cEnd, PetscSF *coveringSF) 2165d71ae5a4SJacob Faibussowitsch { 21660a96aa3bSJed Brown PetscInt startF, endF, startC, endC, p, nLeaves; 21670a96aa3bSJed Brown PetscSFNode *leaves; 21680a96aa3bSJed Brown PetscSF sf; 21690a96aa3bSJed Brown PetscInt *recv, *send; 21700a96aa3bSJed Brown PetscMPIInt tag; 21710a96aa3bSJed Brown MPI_Request *recvReqs, *sendReqs; 21720a96aa3bSJed Brown PetscSection section; 21730a96aa3bSJed Brown 21740a96aa3bSJed Brown PetscFunctionBegin; 21759566063dSJacob Faibussowitsch PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize, p4estC->mpirank, p4estF, p4estC, &startC, &endC)); 21769566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2 * (endC - startC), &recv, endC - startC, &recvReqs)); 21779566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tag)); 21780a96aa3bSJed Brown for (p = startC; p < endC; p++) { 21790a96aa3bSJed Brown recvReqs[p - startC] = MPI_REQUEST_NULL; /* just in case we don't initiate a receive */ 21800a96aa3bSJed Brown if (p4estC->global_first_quadrant[p] == p4estC->global_first_quadrant[p + 1]) { /* empty coarse partition */ 21810a96aa3bSJed Brown recv[2 * (p - startC)] = 0; 21820a96aa3bSJed Brown recv[2 * (p - startC) + 1] = 0; 21830a96aa3bSJed Brown continue; 21840a96aa3bSJed Brown } 21850a96aa3bSJed Brown 21866497c311SBarry Smith PetscCallMPI(MPIU_Irecv(&recv[2 * (p - startC)], 2, MPIU_INT, p, tag, comm, &recvReqs[p - startC])); 21870a96aa3bSJed Brown } 21889566063dSJacob Faibussowitsch PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize, p4estC->mpirank, p4estC, p4estF, &startF, &endF)); 21899566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2 * (endF - startF), &send, endF - startF, &sendReqs)); 21900a96aa3bSJed Brown /* count the quadrants rank will send to each of [startF,endF) */ 21910a96aa3bSJed Brown for (p = startF; p < endF; p++) { 21920a96aa3bSJed Brown p4est_quadrant_t *myFineStart = &p4estF->global_first_position[p]; 21930a96aa3bSJed Brown p4est_quadrant_t *myFineEnd = &p4estF->global_first_position[p + 1]; 21940a96aa3bSJed Brown PetscInt tStart = (PetscInt)myFineStart->p.which_tree; 21950a96aa3bSJed Brown PetscInt tEnd = (PetscInt)myFineEnd->p.which_tree; 21960a96aa3bSJed Brown PetscInt firstCell = -1, lastCell = -1; 21970a96aa3bSJed Brown p4est_tree_t *treeStart = &(((p4est_tree_t *)p4estC->trees->array)[tStart]); 21980a96aa3bSJed Brown p4est_tree_t *treeEnd = (size_t)tEnd < p4estC->trees->elem_count ? &(((p4est_tree_t *)p4estC->trees->array)[tEnd]) : NULL; 21990a96aa3bSJed Brown ssize_t overlapIndex; 22000a96aa3bSJed Brown 22010a96aa3bSJed Brown sendReqs[p - startF] = MPI_REQUEST_NULL; /* just in case we don't initiate a send */ 22020a96aa3bSJed Brown if (p4estF->global_first_quadrant[p] == p4estF->global_first_quadrant[p + 1]) continue; 22030a96aa3bSJed Brown 22040a96aa3bSJed Brown /* locate myFineStart in (or before) a cell */ 22050a96aa3bSJed Brown if (treeStart->quadrants.elem_count) { 2206f4f49eeaSPierre Jolivet PetscCallP4estReturn(overlapIndex, sc_array_bsearch, (&treeStart->quadrants, myFineStart, p4est_quadrant_disjoint)); 22070a96aa3bSJed Brown if (overlapIndex < 0) { 22080a96aa3bSJed Brown firstCell = 0; 22090a96aa3bSJed Brown } else { 22106497c311SBarry Smith firstCell = (PetscInt)(treeStart->quadrants_offset + overlapIndex); 22110a96aa3bSJed Brown } 22120a96aa3bSJed Brown } else { 22130a96aa3bSJed Brown firstCell = 0; 22140a96aa3bSJed Brown } 22150a96aa3bSJed Brown if (treeEnd && treeEnd->quadrants.elem_count) { 2216f4f49eeaSPierre Jolivet PetscCallP4estReturn(overlapIndex, sc_array_bsearch, (&treeEnd->quadrants, myFineEnd, p4est_quadrant_disjoint)); 22170a96aa3bSJed Brown if (overlapIndex < 0) { /* all of this local section is overlapped */ 22180a96aa3bSJed Brown lastCell = p4estC->local_num_quadrants; 22190a96aa3bSJed Brown } else { 22200a96aa3bSJed Brown p4est_quadrant_t *container = &(((p4est_quadrant_t *)treeEnd->quadrants.array)[overlapIndex]); 22210a96aa3bSJed Brown p4est_quadrant_t first_desc; 22220a96aa3bSJed Brown int equal; 22230a96aa3bSJed Brown 2224792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_first_descendant, (container, &first_desc, P4EST_QMAXLEVEL)); 2225792fecdfSBarry Smith PetscCallP4estReturn(equal, p4est_quadrant_is_equal, (myFineEnd, &first_desc)); 22260a96aa3bSJed Brown if (equal) { 22276497c311SBarry Smith lastCell = (PetscInt)(treeEnd->quadrants_offset + overlapIndex); 22280a96aa3bSJed Brown } else { 22296497c311SBarry Smith lastCell = (PetscInt)(treeEnd->quadrants_offset + overlapIndex + 1); 22300a96aa3bSJed Brown } 22310a96aa3bSJed Brown } 22320a96aa3bSJed Brown } else { 22330a96aa3bSJed Brown lastCell = p4estC->local_num_quadrants; 22340a96aa3bSJed Brown } 22350a96aa3bSJed Brown send[2 * (p - startF)] = firstCell; 22360a96aa3bSJed Brown send[2 * (p - startF) + 1] = lastCell - firstCell; 22376497c311SBarry Smith PetscCallMPI(MPIU_Isend(&send[2 * (p - startF)], 2, MPIU_INT, p, tag, comm, &sendReqs[p - startF])); 22380a96aa3bSJed Brown } 22399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall((PetscMPIInt)(endC - startC), recvReqs, MPI_STATUSES_IGNORE)); 22409566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, §ion)); 22419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(section, startC, endC)); 22420a96aa3bSJed Brown for (p = startC; p < endC; p++) { 22430a96aa3bSJed Brown PetscInt numCells = recv[2 * (p - startC) + 1]; 22449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(section, p, numCells)); 22450a96aa3bSJed Brown } 22469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(section)); 22479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &nLeaves)); 22489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &leaves)); 22490a96aa3bSJed Brown for (p = startC; p < endC; p++) { 22500a96aa3bSJed Brown PetscInt firstCell = recv[2 * (p - startC)]; 22510a96aa3bSJed Brown PetscInt numCells = recv[2 * (p - startC) + 1]; 22520a96aa3bSJed Brown PetscInt off, i; 22530a96aa3bSJed Brown 22549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, p, &off)); 22550a96aa3bSJed Brown for (i = 0; i < numCells; i++) { 22560a96aa3bSJed Brown leaves[off + i].rank = p; 22570a96aa3bSJed Brown leaves[off + i].index = firstCell + i; 22580a96aa3bSJed Brown } 22590a96aa3bSJed Brown } 22609566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 22619566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, cEnd - cStart, nLeaves, NULL, PETSC_OWN_POINTER, leaves, PETSC_OWN_POINTER)); 22629566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ion)); 22639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall((PetscMPIInt)(endF - startF), sendReqs, MPI_STATUSES_IGNORE)); 22649566063dSJacob Faibussowitsch PetscCall(PetscFree2(send, sendReqs)); 22659566063dSJacob Faibussowitsch PetscCall(PetscFree2(recv, recvReqs)); 22660a96aa3bSJed Brown *coveringSF = sf; 22673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22680a96aa3bSJed Brown } 22690a96aa3bSJed Brown 22700a96aa3bSJed Brown /* closure points for locally-owned cells */ 2271d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetCellSFNodes(DM dm, PetscInt numClosureIndices, PetscInt *numClosurePoints, PetscSFNode **closurePoints, PetscBool redirect) 2272d71ae5a4SJacob Faibussowitsch { 22730a96aa3bSJed Brown PetscInt cStart, cEnd; 22740a96aa3bSJed Brown PetscInt count, c; 22750a96aa3bSJed Brown PetscMPIInt rank; 22760a96aa3bSJed Brown PetscInt closureSize = -1; 22770a96aa3bSJed Brown PetscInt *closure = NULL; 22780a96aa3bSJed Brown PetscSF pointSF; 22790a96aa3bSJed Brown PetscInt nleaves, nroots; 22800a96aa3bSJed Brown const PetscInt *ilocal; 22810a96aa3bSJed Brown const PetscSFNode *iremote; 22820a96aa3bSJed Brown DM plex; 22830a96aa3bSJed Brown DM_Forest *forest; 22840a96aa3bSJed Brown DM_Forest_pforest *pforest; 22850a96aa3bSJed Brown 22860a96aa3bSJed Brown PetscFunctionBegin; 22870a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 22880a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 22890a96aa3bSJed Brown cStart = pforest->cLocalStart; 22900a96aa3bSJed Brown cEnd = pforest->cLocalEnd; 22919566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 22929566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &pointSF)); 22939566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF, &nroots, &nleaves, &ilocal, &iremote)); 22940a96aa3bSJed Brown nleaves = PetscMax(0, nleaves); 22950a96aa3bSJed Brown nroots = PetscMax(0, nroots); 22960a96aa3bSJed Brown *numClosurePoints = numClosureIndices * (cEnd - cStart); 22979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numClosurePoints, closurePoints)); 22989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 22990a96aa3bSJed Brown for (c = cStart, count = 0; c < cEnd; c++) { 23000a96aa3bSJed Brown PetscInt i; 23019566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, c, PETSC_TRUE, &closureSize, &closure)); 23020a96aa3bSJed Brown 23030a96aa3bSJed Brown for (i = 0; i < numClosureIndices; i++, count++) { 23040a96aa3bSJed Brown PetscInt p = closure[2 * i]; 23050a96aa3bSJed Brown PetscInt loc = -1; 23060a96aa3bSJed Brown 23079566063dSJacob Faibussowitsch PetscCall(PetscFindInt(p, nleaves, ilocal, &loc)); 23080a96aa3bSJed Brown if (redirect && loc >= 0) { 23090a96aa3bSJed Brown (*closurePoints)[count].rank = iremote[loc].rank; 23100a96aa3bSJed Brown (*closurePoints)[count].index = iremote[loc].index; 23110a96aa3bSJed Brown } else { 23120a96aa3bSJed Brown (*closurePoints)[count].rank = rank; 23130a96aa3bSJed Brown (*closurePoints)[count].index = p; 23140a96aa3bSJed Brown } 23150a96aa3bSJed Brown } 23169566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, c, PETSC_TRUE, &closureSize, &closure)); 23170a96aa3bSJed Brown } 23183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23190a96aa3bSJed Brown } 23200a96aa3bSJed Brown 2321d71ae5a4SJacob Faibussowitsch static void MPIAPI DMPforestMaxSFNode(void *a, void *b, PetscMPIInt *len, MPI_Datatype *type) 2322d71ae5a4SJacob Faibussowitsch { 23230a96aa3bSJed Brown PetscMPIInt i; 23240a96aa3bSJed Brown 23250a96aa3bSJed Brown for (i = 0; i < *len; i++) { 23260a96aa3bSJed Brown PetscSFNode *A = (PetscSFNode *)a; 23270a96aa3bSJed Brown PetscSFNode *B = (PetscSFNode *)b; 23280a96aa3bSJed Brown 23290a96aa3bSJed Brown if (B->rank < 0) *B = *A; 23300a96aa3bSJed Brown } 23310a96aa3bSJed Brown } 23320a96aa3bSJed Brown 2333d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetTransferSF_Point(DM coarse, DM fine, PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[]) 2334d71ae5a4SJacob Faibussowitsch { 23350a96aa3bSJed Brown MPI_Comm comm; 23360a96aa3bSJed Brown PetscMPIInt rank, size; 23370a96aa3bSJed Brown DM_Forest_pforest *pforestC, *pforestF; 23380a96aa3bSJed Brown p4est_t *p4estC, *p4estF; 23390a96aa3bSJed Brown PetscInt numClosureIndices; 23400a96aa3bSJed Brown PetscInt numClosurePointsC, numClosurePointsF; 23410a96aa3bSJed Brown PetscSFNode *closurePointsC, *closurePointsF; 23420a96aa3bSJed Brown p4est_quadrant_t *coverQuads = NULL; 23430a96aa3bSJed Brown p4est_quadrant_t **treeQuads; 23440a96aa3bSJed Brown PetscInt *treeQuadCounts; 23450a96aa3bSJed Brown MPI_Datatype nodeType; 23460a96aa3bSJed Brown MPI_Datatype nodeClosureType; 23470a96aa3bSJed Brown MPI_Op sfNodeReduce; 23480a96aa3bSJed Brown p4est_topidx_t fltF, lltF, t; 23490a96aa3bSJed Brown DM plexC, plexF; 23500a96aa3bSJed Brown PetscInt pStartF, pEndF, pStartC, pEndC; 23510a96aa3bSJed Brown PetscBool saveInCoarse = PETSC_FALSE; 23520a96aa3bSJed Brown PetscBool saveInFine = PETSC_FALSE; 23530a96aa3bSJed Brown PetscBool formCids = (childIds != NULL) ? PETSC_TRUE : PETSC_FALSE; 23540a96aa3bSJed Brown PetscInt *cids = NULL; 23550a96aa3bSJed Brown 23560a96aa3bSJed Brown PetscFunctionBegin; 23570a96aa3bSJed Brown pforestC = (DM_Forest_pforest *)((DM_Forest *)coarse->data)->data; 23580a96aa3bSJed Brown pforestF = (DM_Forest_pforest *)((DM_Forest *)fine->data)->data; 23590a96aa3bSJed Brown p4estC = pforestC->forest; 23600a96aa3bSJed Brown p4estF = pforestF->forest; 236108401ef6SPierre Jolivet PetscCheck(pforestC->topo == pforestF->topo, PetscObjectComm((PetscObject)coarse), PETSC_ERR_ARG_INCOMP, "DM's must have the same base DM"); 23620a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)coarse); 23639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 23649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 23659566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(fine, &plexF)); 23669566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexF, &pStartF, &pEndF)); 23679566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(coarse, &plexC)); 23689566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexC, &pStartC, &pEndC)); 23690a96aa3bSJed Brown { /* check if the results have been cached */ 23700a96aa3bSJed Brown DM adaptCoarse, adaptFine; 23710a96aa3bSJed Brown 23729566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(coarse, &adaptCoarse)); 23739566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(fine, &adaptFine)); 23740a96aa3bSJed Brown if (adaptCoarse && adaptCoarse->data == fine->data) { /* coarse is adapted from fine */ 23750a96aa3bSJed Brown if (pforestC->pointSelfToAdaptSF) { 2376f4f49eeaSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)pforestC->pointSelfToAdaptSF)); 23770a96aa3bSJed Brown *sf = pforestC->pointSelfToAdaptSF; 23780a96aa3bSJed Brown if (childIds) { 23799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &cids)); 23809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(cids, pforestC->pointSelfToAdaptCids, pEndF - pStartF)); 23810a96aa3bSJed Brown *childIds = cids; 23820a96aa3bSJed Brown } 23833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23840a96aa3bSJed Brown } else { 23850a96aa3bSJed Brown saveInCoarse = PETSC_TRUE; 23860a96aa3bSJed Brown formCids = PETSC_TRUE; 23870a96aa3bSJed Brown } 23880a96aa3bSJed Brown } else if (adaptFine && adaptFine->data == coarse->data) { /* fine is adapted from coarse */ 23890a96aa3bSJed Brown if (pforestF->pointAdaptToSelfSF) { 2390f4f49eeaSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)pforestF->pointAdaptToSelfSF)); 23910a96aa3bSJed Brown *sf = pforestF->pointAdaptToSelfSF; 23920a96aa3bSJed Brown if (childIds) { 23939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &cids)); 23949566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(cids, pforestF->pointAdaptToSelfCids, pEndF - pStartF)); 23950a96aa3bSJed Brown *childIds = cids; 23960a96aa3bSJed Brown } 23973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23980a96aa3bSJed Brown } else { 23990a96aa3bSJed Brown saveInFine = PETSC_TRUE; 24000a96aa3bSJed Brown formCids = PETSC_TRUE; 24010a96aa3bSJed Brown } 24020a96aa3bSJed Brown } 24030a96aa3bSJed Brown } 24040a96aa3bSJed Brown 24050a96aa3bSJed Brown /* count the number of closure points that have dofs and create a list */ 24060a96aa3bSJed Brown numClosureIndices = P4EST_INSUL; 24070a96aa3bSJed Brown /* create the datatype */ 24089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(2, MPIU_INT, &nodeType)); 24099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&nodeType)); 24109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(DMPforestMaxSFNode, PETSC_FALSE, &sfNodeReduce)); 24119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(numClosureIndices * 2, MPIU_INT, &nodeClosureType)); 24129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&nodeClosureType)); 24130a96aa3bSJed Brown /* everything has to go through cells: for each cell, create a list of the sfnodes in its closure */ 24140a96aa3bSJed Brown /* get lists of closure point SF nodes for every cell */ 24159566063dSJacob Faibussowitsch PetscCall(DMPforestGetCellSFNodes(coarse, numClosureIndices, &numClosurePointsC, &closurePointsC, PETSC_TRUE)); 24169566063dSJacob Faibussowitsch PetscCall(DMPforestGetCellSFNodes(fine, numClosureIndices, &numClosurePointsF, &closurePointsF, PETSC_FALSE)); 24170a96aa3bSJed Brown /* create pointers for tree lists */ 24180a96aa3bSJed Brown fltF = p4estF->first_local_tree; 24190a96aa3bSJed Brown lltF = p4estF->last_local_tree; 24209566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(lltF + 1 - fltF, &treeQuads, lltF + 1 - fltF, &treeQuadCounts)); 24210a96aa3bSJed Brown /* if the partitions don't match, ship the coarse to cover the fine */ 24220a96aa3bSJed Brown if (size > 1) { 24230a96aa3bSJed Brown PetscInt p; 24240a96aa3bSJed Brown 24250a96aa3bSJed Brown for (p = 0; p < size; p++) { 24260a96aa3bSJed Brown int equal; 24270a96aa3bSJed Brown 2428792fecdfSBarry Smith PetscCallP4estReturn(equal, p4est_quadrant_is_equal_piggy, (&p4estC->global_first_position[p], &p4estF->global_first_position[p])); 24290a96aa3bSJed Brown if (!equal) break; 24300a96aa3bSJed Brown } 24310a96aa3bSJed Brown if (p < size) { /* non-matching distribution: send the coarse to cover the fine */ 24320a96aa3bSJed Brown PetscInt cStartC, cEndC; 24330a96aa3bSJed Brown PetscSF coveringSF; 24340a96aa3bSJed Brown PetscInt nleaves; 24350a96aa3bSJed Brown PetscInt count; 24360a96aa3bSJed Brown PetscSFNode *newClosurePointsC; 24370a96aa3bSJed Brown p4est_quadrant_t *coverQuadsSend; 24380a96aa3bSJed Brown p4est_topidx_t fltC = p4estC->first_local_tree; 24390a96aa3bSJed Brown p4est_topidx_t lltC = p4estC->last_local_tree; 24400a96aa3bSJed Brown p4est_topidx_t t; 24410a96aa3bSJed Brown PetscMPIInt blockSizes[4] = {P4EST_DIM, 2, 1, 1}; 24429371c9d4SSatish Balay MPI_Aint blockOffsets[4] = {offsetof(p4est_quadrant_t, x), offsetof(p4est_quadrant_t, level), offsetof(p4est_quadrant_t, pad16), offsetof(p4est_quadrant_t, p)}; 24430a96aa3bSJed Brown MPI_Datatype blockTypes[4] = {MPI_INT32_T, MPI_INT8_T, MPI_INT16_T, MPI_INT32_T /* p.which_tree */}; 24440a96aa3bSJed Brown MPI_Datatype quadStruct, quadType; 24450a96aa3bSJed Brown 24469566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plexC, 0, &cStartC, &cEndC)); 24479566063dSJacob Faibussowitsch PetscCall(DMPforestGetCellCoveringSF(comm, p4estC, p4estF, pforestC->cLocalStart, pforestC->cLocalEnd, &coveringSF)); 24489566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coveringSF, NULL, &nleaves, NULL, NULL)); 24499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numClosureIndices * nleaves, &newClosurePointsC)); 24509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &coverQuads)); 24519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEndC - cStartC, &coverQuadsSend)); 24520a96aa3bSJed Brown count = 0; 24530a96aa3bSJed Brown for (t = fltC; t <= lltC; t++) { /* unfortunately, we need to pack a send array, since quads are not stored packed in p4est */ 24540a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4estC->trees->array)[t]); 24550a96aa3bSJed Brown PetscInt q; 24560a96aa3bSJed Brown 24579566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(&coverQuadsSend[count], tree->quadrants.array, tree->quadrants.elem_count * sizeof(p4est_quadrant_t))); 24580a96aa3bSJed Brown for (q = 0; (size_t)q < tree->quadrants.elem_count; q++) coverQuadsSend[count + q].p.which_tree = t; 24590a96aa3bSJed Brown count += tree->quadrants.elem_count; 24600a96aa3bSJed Brown } 24610a96aa3bSJed Brown /* p is of a union type p4est_quadrant_data, but only the p.which_tree field is active at this time. So, we 24620a96aa3bSJed Brown have a simple blockTypes[] to use. Note that quadStruct does not count potential padding in array of 24630a96aa3bSJed Brown p4est_quadrant_t. We have to call MPI_Type_create_resized() to change upper-bound of quadStruct. 24640a96aa3bSJed Brown */ 24659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_struct(4, blockSizes, blockOffsets, blockTypes, &quadStruct)); 24669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(quadStruct, 0, sizeof(p4est_quadrant_t), &quadType)); 24679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&quadType)); 24689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coveringSF, nodeClosureType, closurePointsC, newClosurePointsC, MPI_REPLACE)); 24699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coveringSF, quadType, coverQuadsSend, coverQuads, MPI_REPLACE)); 24709566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coveringSF, nodeClosureType, closurePointsC, newClosurePointsC, MPI_REPLACE)); 24719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coveringSF, quadType, coverQuadsSend, coverQuads, MPI_REPLACE)); 24729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&quadStruct)); 24739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&quadType)); 24749566063dSJacob Faibussowitsch PetscCall(PetscFree(coverQuadsSend)); 24759566063dSJacob Faibussowitsch PetscCall(PetscFree(closurePointsC)); 24769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coveringSF)); 24770a96aa3bSJed Brown closurePointsC = newClosurePointsC; 24780a96aa3bSJed Brown 24790a96aa3bSJed Brown /* assign tree quads based on locations in coverQuads */ 24800a96aa3bSJed Brown { 24810a96aa3bSJed Brown PetscInt q; 24820a96aa3bSJed Brown for (q = 0; q < nleaves; q++) { 24830a96aa3bSJed Brown p4est_locidx_t t = coverQuads[q].p.which_tree; 24840a96aa3bSJed Brown if (!treeQuadCounts[t - fltF]++) treeQuads[t - fltF] = &coverQuads[q]; 24850a96aa3bSJed Brown } 24860a96aa3bSJed Brown } 24870a96aa3bSJed Brown } 24880a96aa3bSJed Brown } 24890a96aa3bSJed Brown if (!coverQuads) { /* matching partitions: assign tree quads based on locations in p4est native arrays */ 24900a96aa3bSJed Brown for (t = fltF; t <= lltF; t++) { 24910a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4estC->trees->array)[t]); 24920a96aa3bSJed Brown 24936497c311SBarry Smith treeQuadCounts[t - fltF] = (PetscInt)tree->quadrants.elem_count; 24940a96aa3bSJed Brown treeQuads[t - fltF] = (p4est_quadrant_t *)tree->quadrants.array; 24950a96aa3bSJed Brown } 24960a96aa3bSJed Brown } 24970a96aa3bSJed Brown 24980a96aa3bSJed Brown { 24990a96aa3bSJed Brown PetscInt p; 25000a96aa3bSJed Brown PetscInt cLocalStartF; 25010a96aa3bSJed Brown PetscSF pointSF; 25020a96aa3bSJed Brown PetscSFNode *roots; 25030a96aa3bSJed Brown PetscInt *rootType; 25040a96aa3bSJed Brown DM refTree = NULL; 25050a96aa3bSJed Brown DMLabel canonical; 25060a96aa3bSJed Brown PetscInt *childClosures[P4EST_CHILDREN] = {NULL}; 25070a96aa3bSJed Brown PetscInt *rootClosure = NULL; 25080a96aa3bSJed Brown PetscInt coarseOffset; 25090a96aa3bSJed Brown PetscInt numCoarseQuads; 25100a96aa3bSJed Brown 25119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &roots)); 25129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &rootType)); 25139566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(fine, &pointSF)); 25140a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 25150a96aa3bSJed Brown roots[p - pStartF].rank = -1; 25160a96aa3bSJed Brown roots[p - pStartF].index = -1; 25170a96aa3bSJed Brown rootType[p - pStartF] = -1; 25180a96aa3bSJed Brown } 25190a96aa3bSJed Brown if (formCids) { 25200a96aa3bSJed Brown PetscInt child; 25210a96aa3bSJed Brown 25229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &cids)); 25230a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) cids[p - pStartF] = -2; 25249566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(plexF, &refTree)); 25259566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(refTree, 0, PETSC_TRUE, NULL, &rootClosure)); 25260a96aa3bSJed Brown for (child = 0; child < P4EST_CHILDREN; child++) { /* get the closures of the child cells in the reference tree */ 25279566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(refTree, child + 1, PETSC_TRUE, NULL, &childClosures[child])); 25280a96aa3bSJed Brown } 25299566063dSJacob Faibussowitsch PetscCall(DMGetLabel(refTree, "canonical", &canonical)); 25300a96aa3bSJed Brown } 25310a96aa3bSJed Brown cLocalStartF = pforestF->cLocalStart; 25320a96aa3bSJed Brown for (t = fltF, coarseOffset = 0, numCoarseQuads = 0; t <= lltF; t++, coarseOffset += numCoarseQuads) { 25330a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4estF->trees->array)[t]); 25346497c311SBarry Smith PetscInt numFineQuads = (PetscInt)tree->quadrants.elem_count; 25350a96aa3bSJed Brown p4est_quadrant_t *coarseQuads = treeQuads[t - fltF]; 25360a96aa3bSJed Brown p4est_quadrant_t *fineQuads = (p4est_quadrant_t *)tree->quadrants.array; 25370a96aa3bSJed Brown PetscInt i, coarseCount = 0; 25380a96aa3bSJed Brown PetscInt offset = tree->quadrants_offset; 25390a96aa3bSJed Brown sc_array_t coarseQuadsArray; 25400a96aa3bSJed Brown 25410a96aa3bSJed Brown numCoarseQuads = treeQuadCounts[t - fltF]; 2542792fecdfSBarry Smith PetscCallP4est(sc_array_init_data, (&coarseQuadsArray, coarseQuads, sizeof(p4est_quadrant_t), (size_t)numCoarseQuads)); 25430a96aa3bSJed Brown for (i = 0; i < numFineQuads; i++) { 25440a96aa3bSJed Brown PetscInt c = i + offset; 25450a96aa3bSJed Brown p4est_quadrant_t *quad = &fineQuads[i]; 25460a96aa3bSJed Brown p4est_quadrant_t *quadCoarse = NULL; 25470a96aa3bSJed Brown ssize_t disjoint = -1; 25480a96aa3bSJed Brown 25490a96aa3bSJed Brown while (disjoint < 0 && coarseCount < numCoarseQuads) { 25500a96aa3bSJed Brown quadCoarse = &coarseQuads[coarseCount]; 2551792fecdfSBarry Smith PetscCallP4estReturn(disjoint, p4est_quadrant_disjoint, (quadCoarse, quad)); 25520a96aa3bSJed Brown if (disjoint < 0) coarseCount++; 25530a96aa3bSJed Brown } 255408401ef6SPierre Jolivet PetscCheck(disjoint == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "did not find overlapping coarse quad"); 25550a96aa3bSJed Brown if (quadCoarse->level > quad->level || (quadCoarse->level == quad->level && !transferIdent)) { /* the "coarse" mesh is finer than the fine mesh at the point: continue */ 25560a96aa3bSJed Brown if (transferIdent) { /* find corners */ 25570a96aa3bSJed Brown PetscInt j = 0; 25580a96aa3bSJed Brown 25590a96aa3bSJed Brown do { 25600a96aa3bSJed Brown if (j < P4EST_CHILDREN) { 25610a96aa3bSJed Brown p4est_quadrant_t cornerQuad; 25620a96aa3bSJed Brown int equal; 25630a96aa3bSJed Brown 2564792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_corner_descendant, (quad, &cornerQuad, j, quadCoarse->level)); 2565792fecdfSBarry Smith PetscCallP4estReturn(equal, p4est_quadrant_is_equal, (&cornerQuad, quadCoarse)); 25660a96aa3bSJed Brown if (equal) { 25670a96aa3bSJed Brown PetscInt petscJ = P4estVertToPetscVert[j]; 25680a96aa3bSJed Brown PetscInt p = closurePointsF[numClosureIndices * c + (P4EST_INSUL - P4EST_CHILDREN) + petscJ].index; 25690a96aa3bSJed Brown PetscSFNode q = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + (P4EST_INSUL - P4EST_CHILDREN) + petscJ]; 25700a96aa3bSJed Brown 25710a96aa3bSJed Brown roots[p - pStartF] = q; 2572*1690c2aeSBarry Smith rootType[p - pStartF] = PETSC_INT_MAX; 25730a96aa3bSJed Brown cids[p - pStartF] = -1; 25740a96aa3bSJed Brown j++; 25750a96aa3bSJed Brown } 25760a96aa3bSJed Brown } 25770a96aa3bSJed Brown coarseCount++; 25780a96aa3bSJed Brown disjoint = 1; 25790a96aa3bSJed Brown if (coarseCount < numCoarseQuads) { 25800a96aa3bSJed Brown quadCoarse = &coarseQuads[coarseCount]; 2581792fecdfSBarry Smith PetscCallP4estReturn(disjoint, p4est_quadrant_disjoint, (quadCoarse, quad)); 25820a96aa3bSJed Brown } 25830a96aa3bSJed Brown } while (!disjoint); 25840a96aa3bSJed Brown } 25850a96aa3bSJed Brown continue; 25860a96aa3bSJed Brown } 25870a96aa3bSJed Brown if (quadCoarse->level == quad->level) { /* same quad present in coarse and fine mesh */ 25880a96aa3bSJed Brown PetscInt j; 25890a96aa3bSJed Brown for (j = 0; j < numClosureIndices; j++) { 25900a96aa3bSJed Brown PetscInt p = closurePointsF[numClosureIndices * c + j].index; 25910a96aa3bSJed Brown 25920a96aa3bSJed Brown roots[p - pStartF] = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + j]; 2593*1690c2aeSBarry Smith rootType[p - pStartF] = PETSC_INT_MAX; /* unconditionally accept */ 25940a96aa3bSJed Brown cids[p - pStartF] = -1; 25950a96aa3bSJed Brown } 25960a96aa3bSJed Brown } else { 25970a96aa3bSJed Brown PetscInt levelDiff = quad->level - quadCoarse->level; 25980a96aa3bSJed Brown PetscInt proposedCids[P4EST_INSUL] = {0}; 25990a96aa3bSJed Brown 26000a96aa3bSJed Brown if (formCids) { 26010a96aa3bSJed Brown PetscInt cl; 26020a96aa3bSJed Brown PetscInt *pointClosure = NULL; 26030a96aa3bSJed Brown int cid; 26040a96aa3bSJed Brown 260508401ef6SPierre Jolivet PetscCheck(levelDiff <= 1, PETSC_COMM_SELF, PETSC_ERR_USER, "Recursive child ids not implemented"); 2606792fecdfSBarry Smith PetscCallP4estReturn(cid, p4est_quadrant_child_id, (quad)); 26079566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plexF, c + cLocalStartF, PETSC_TRUE, NULL, &pointClosure)); 26080a96aa3bSJed Brown for (cl = 0; cl < P4EST_INSUL; cl++) { 26090a96aa3bSJed Brown PetscInt p = pointClosure[2 * cl]; 26100a96aa3bSJed Brown PetscInt point = childClosures[cid][2 * cl]; 26110a96aa3bSJed Brown PetscInt ornt = childClosures[cid][2 * cl + 1]; 26120a96aa3bSJed Brown PetscInt newcid = -1; 26130a96aa3bSJed Brown DMPolytopeType ct; 26140a96aa3bSJed Brown 2615*1690c2aeSBarry Smith if (rootType[p - pStartF] == PETSC_INT_MAX) continue; 26169566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(refTree, point, &ct)); 26170a96aa3bSJed Brown ornt = DMPolytopeConvertNewOrientation_Internal(ct, ornt); 26180a96aa3bSJed Brown if (!cl) { 26190a96aa3bSJed Brown newcid = cid + 1; 26200a96aa3bSJed Brown } else { 26210a96aa3bSJed Brown PetscInt rcl, parent, parentOrnt = 0; 26220a96aa3bSJed Brown 26239566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(refTree, point, &parent, NULL)); 26240a96aa3bSJed Brown if (parent == point) { 26250a96aa3bSJed Brown newcid = -1; 26260a96aa3bSJed Brown } else if (!parent) { /* in the root */ 26270a96aa3bSJed Brown newcid = point; 26280a96aa3bSJed Brown } else { 26290a96aa3bSJed Brown DMPolytopeType rct = DM_POLYTOPE_UNKNOWN; 26300a96aa3bSJed Brown 26310a96aa3bSJed Brown for (rcl = 1; rcl < P4EST_INSUL; rcl++) { 26320a96aa3bSJed Brown if (rootClosure[2 * rcl] == parent) { 26339566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(refTree, parent, &rct)); 26340a96aa3bSJed Brown parentOrnt = DMPolytopeConvertNewOrientation_Internal(rct, rootClosure[2 * rcl + 1]); 26350a96aa3bSJed Brown break; 26360a96aa3bSJed Brown } 26370a96aa3bSJed Brown } 263808401ef6SPierre Jolivet PetscCheck(rcl < P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Couldn't find parent in root closure"); 26399566063dSJacob Faibussowitsch PetscCall(DMPlexReferenceTreeGetChildSymmetry(refTree, parent, parentOrnt, ornt, point, DMPolytopeConvertNewOrientation_Internal(rct, pointClosure[2 * rcl + 1]), NULL, &newcid)); 26400a96aa3bSJed Brown } 26410a96aa3bSJed Brown } 26420a96aa3bSJed Brown if (newcid >= 0) { 264348a46eb9SPierre Jolivet if (canonical) PetscCall(DMLabelGetValue(canonical, newcid, &newcid)); 26440a96aa3bSJed Brown proposedCids[cl] = newcid; 26450a96aa3bSJed Brown } 26460a96aa3bSJed Brown } 26479566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plexF, c + cLocalStartF, PETSC_TRUE, NULL, &pointClosure)); 26480a96aa3bSJed Brown } 26499371c9d4SSatish Balay p4est_qcoord_t coarseBound[2][P4EST_DIM] = { 26509371c9d4SSatish Balay {quadCoarse->x, quadCoarse->y, 26510a96aa3bSJed Brown #if defined(P4_TO_P8) 26520a96aa3bSJed Brown quadCoarse->z 26530a96aa3bSJed Brown #endif 26549371c9d4SSatish Balay }, 26559371c9d4SSatish Balay {0} 26569371c9d4SSatish Balay }; 26579371c9d4SSatish Balay p4est_qcoord_t fineBound[2][P4EST_DIM] = { 26589371c9d4SSatish Balay {quad->x, quad->y, 26590a96aa3bSJed Brown #if defined(P4_TO_P8) 26600a96aa3bSJed Brown quad->z 26610a96aa3bSJed Brown #endif 26629371c9d4SSatish Balay }, 26639371c9d4SSatish Balay {0} 26649371c9d4SSatish Balay }; 26650a96aa3bSJed Brown PetscInt j; 26660a96aa3bSJed Brown for (j = 0; j < P4EST_DIM; j++) { /* get the coordinates of cell boundaries in each direction */ 26670a96aa3bSJed Brown coarseBound[1][j] = coarseBound[0][j] + P4EST_QUADRANT_LEN(quadCoarse->level); 26680a96aa3bSJed Brown fineBound[1][j] = fineBound[0][j] + P4EST_QUADRANT_LEN(quad->level); 26690a96aa3bSJed Brown } 26700a96aa3bSJed Brown for (j = 0; j < numClosureIndices; j++) { 26710a96aa3bSJed Brown PetscInt l, p; 26720a96aa3bSJed Brown PetscSFNode q; 26730a96aa3bSJed Brown 26740a96aa3bSJed Brown p = closurePointsF[numClosureIndices * c + j].index; 2675*1690c2aeSBarry Smith if (rootType[p - pStartF] == PETSC_INT_MAX) continue; 26760a96aa3bSJed Brown if (j == 0) { /* volume: ancestor is volume */ 26770a96aa3bSJed Brown l = 0; 26780a96aa3bSJed Brown } else if (j < 1 + P4EST_FACES) { /* facet */ 26790a96aa3bSJed Brown PetscInt face = PetscFaceToP4estFace[j - 1]; 26800a96aa3bSJed Brown PetscInt direction = face / 2; 26810a96aa3bSJed Brown PetscInt coarseFace = -1; 26820a96aa3bSJed Brown 26830a96aa3bSJed Brown if (coarseBound[face % 2][direction] == fineBound[face % 2][direction]) { 26840a96aa3bSJed Brown coarseFace = face; 26850a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 26860a96aa3bSJed Brown } else { 26870a96aa3bSJed Brown l = 0; 26880a96aa3bSJed Brown } 26890a96aa3bSJed Brown #if defined(P4_TO_P8) 26900a96aa3bSJed Brown } else if (j < 1 + P4EST_FACES + P8EST_EDGES) { 26910a96aa3bSJed Brown PetscInt edge = PetscEdgeToP4estEdge[j - (1 + P4EST_FACES)]; 26920a96aa3bSJed Brown PetscInt direction = edge / 4; 26930a96aa3bSJed Brown PetscInt mod = edge % 4; 26940a96aa3bSJed Brown PetscInt coarseEdge = -1, coarseFace = -1; 26950a96aa3bSJed Brown PetscInt minDir = PetscMin((direction + 1) % 3, (direction + 2) % 3); 26960a96aa3bSJed Brown PetscInt maxDir = PetscMax((direction + 1) % 3, (direction + 2) % 3); 26970a96aa3bSJed Brown PetscBool dirTest[2]; 26980a96aa3bSJed Brown 26990a96aa3bSJed Brown dirTest[0] = (PetscBool)(coarseBound[mod % 2][minDir] == fineBound[mod % 2][minDir]); 27000a96aa3bSJed Brown dirTest[1] = (PetscBool)(coarseBound[mod / 2][maxDir] == fineBound[mod / 2][maxDir]); 27010a96aa3bSJed Brown 27020a96aa3bSJed Brown if (dirTest[0] && dirTest[1]) { /* fine edge falls on coarse edge */ 27030a96aa3bSJed Brown coarseEdge = edge; 27040a96aa3bSJed Brown l = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge]; 27050a96aa3bSJed Brown } else if (dirTest[0]) { /* fine edge falls on a coarse face in the minDir direction */ 27060a96aa3bSJed Brown coarseFace = 2 * minDir + (mod % 2); 27070a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27080a96aa3bSJed Brown } else if (dirTest[1]) { /* fine edge falls on a coarse face in the maxDir direction */ 27090a96aa3bSJed Brown coarseFace = 2 * maxDir + (mod / 2); 27100a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27110a96aa3bSJed Brown } else { 27120a96aa3bSJed Brown l = 0; 27130a96aa3bSJed Brown } 27140a96aa3bSJed Brown #endif 27150a96aa3bSJed Brown } else { 27160a96aa3bSJed Brown PetscInt vertex = PetscVertToP4estVert[P4EST_CHILDREN - (P4EST_INSUL - j)]; 27170a96aa3bSJed Brown PetscBool dirTest[P4EST_DIM]; 27180a96aa3bSJed Brown PetscInt m; 27190a96aa3bSJed Brown PetscInt numMatch = 0; 27200a96aa3bSJed Brown PetscInt coarseVertex = -1, coarseFace = -1; 27210a96aa3bSJed Brown #if defined(P4_TO_P8) 27220a96aa3bSJed Brown PetscInt coarseEdge = -1; 27230a96aa3bSJed Brown #endif 27240a96aa3bSJed Brown 27250a96aa3bSJed Brown for (m = 0; m < P4EST_DIM; m++) { 27260a96aa3bSJed Brown dirTest[m] = (PetscBool)(coarseBound[(vertex >> m) & 1][m] == fineBound[(vertex >> m) & 1][m]); 27270a96aa3bSJed Brown if (dirTest[m]) numMatch++; 27280a96aa3bSJed Brown } 27290a96aa3bSJed Brown if (numMatch == P4EST_DIM) { /* vertex on vertex */ 27300a96aa3bSJed Brown coarseVertex = vertex; 27310a96aa3bSJed Brown l = P4EST_INSUL - (P4EST_CHILDREN - P4estVertToPetscVert[coarseVertex]); 27320a96aa3bSJed Brown } else if (numMatch == 1) { /* vertex on face */ 27330a96aa3bSJed Brown for (m = 0; m < P4EST_DIM; m++) { 27340a96aa3bSJed Brown if (dirTest[m]) { 27350a96aa3bSJed Brown coarseFace = 2 * m + ((vertex >> m) & 1); 27360a96aa3bSJed Brown break; 27370a96aa3bSJed Brown } 27380a96aa3bSJed Brown } 27390a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27400a96aa3bSJed Brown #if defined(P4_TO_P8) 27410a96aa3bSJed Brown } else if (numMatch == 2) { /* vertex on edge */ 27420a96aa3bSJed Brown for (m = 0; m < P4EST_DIM; m++) { 27430a96aa3bSJed Brown if (!dirTest[m]) { 27440a96aa3bSJed Brown PetscInt otherDir1 = (m + 1) % 3; 27450a96aa3bSJed Brown PetscInt otherDir2 = (m + 2) % 3; 27460a96aa3bSJed Brown PetscInt minDir = PetscMin(otherDir1, otherDir2); 27470a96aa3bSJed Brown PetscInt maxDir = PetscMax(otherDir1, otherDir2); 27480a96aa3bSJed Brown 27490a96aa3bSJed Brown coarseEdge = m * 4 + 2 * ((vertex >> maxDir) & 1) + ((vertex >> minDir) & 1); 27500a96aa3bSJed Brown break; 27510a96aa3bSJed Brown } 27520a96aa3bSJed Brown } 27530a96aa3bSJed Brown l = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge]; 27540a96aa3bSJed Brown #endif 27550a96aa3bSJed Brown } else { /* volume */ 27560a96aa3bSJed Brown l = 0; 27570a96aa3bSJed Brown } 27580a96aa3bSJed Brown } 27590a96aa3bSJed Brown q = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + l]; 27600a96aa3bSJed Brown if (l > rootType[p - pStartF]) { 27610a96aa3bSJed Brown if (l >= P4EST_INSUL - P4EST_CHILDREN) { /* vertex on vertex: unconditional acceptance */ 27620a96aa3bSJed Brown if (transferIdent) { 27630a96aa3bSJed Brown roots[p - pStartF] = q; 2764*1690c2aeSBarry Smith rootType[p - pStartF] = PETSC_INT_MAX; 27650a96aa3bSJed Brown if (formCids) cids[p - pStartF] = -1; 27660a96aa3bSJed Brown } 27670a96aa3bSJed Brown } else { 27680a96aa3bSJed Brown PetscInt k, thisp = p, limit; 27690a96aa3bSJed Brown 27700a96aa3bSJed Brown roots[p - pStartF] = q; 27710a96aa3bSJed Brown rootType[p - pStartF] = l; 27720a96aa3bSJed Brown if (formCids) cids[p - pStartF] = proposedCids[j]; 27730a96aa3bSJed Brown limit = transferIdent ? levelDiff : (levelDiff - 1); 27740a96aa3bSJed Brown for (k = 0; k < limit; k++) { 27750a96aa3bSJed Brown PetscInt parent; 27760a96aa3bSJed Brown 27779566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plexF, thisp, &parent, NULL)); 27780a96aa3bSJed Brown if (parent == thisp) break; 27790a96aa3bSJed Brown 27800a96aa3bSJed Brown roots[parent - pStartF] = q; 2781*1690c2aeSBarry Smith rootType[parent - pStartF] = PETSC_INT_MAX; 27820a96aa3bSJed Brown if (formCids) cids[parent - pStartF] = -1; 27830a96aa3bSJed Brown thisp = parent; 27840a96aa3bSJed Brown } 27850a96aa3bSJed Brown } 27860a96aa3bSJed Brown } 27870a96aa3bSJed Brown } 27880a96aa3bSJed Brown } 27890a96aa3bSJed Brown } 27900a96aa3bSJed Brown } 27910a96aa3bSJed Brown 27920a96aa3bSJed Brown /* now every cell has labeled the points in its closure, so we first make sure everyone agrees by reducing to roots, and the broadcast the agreements */ 27930a96aa3bSJed Brown if (size > 1) { 27940a96aa3bSJed Brown PetscInt *rootTypeCopy, p; 27950a96aa3bSJed Brown 27969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &rootTypeCopy)); 27979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rootTypeCopy, rootType, pEndF - pStartF)); 279857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_MAX)); 279957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_MAX)); 28009566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_REPLACE)); 28019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_REPLACE)); 28020a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 28030a96aa3bSJed Brown if (rootTypeCopy[p - pStartF] > rootType[p - pStartF]) { /* another process found a root of higher type (e.g. vertex instead of edge), which we want to accept, so nullify this */ 28040a96aa3bSJed Brown roots[p - pStartF].rank = -1; 28050a96aa3bSJed Brown roots[p - pStartF].index = -1; 28060a96aa3bSJed Brown } 2807*1690c2aeSBarry Smith if (formCids && rootTypeCopy[p - pStartF] == PETSC_INT_MAX) { cids[p - pStartF] = -1; /* we have found an antecedent that is the same: no child id */ } 28080a96aa3bSJed Brown } 28099566063dSJacob Faibussowitsch PetscCall(PetscFree(rootTypeCopy)); 28109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(pointSF, nodeType, roots, roots, sfNodeReduce)); 28119566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(pointSF, nodeType, roots, roots, sfNodeReduce)); 28129566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF, nodeType, roots, roots, MPI_REPLACE)); 28139566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF, nodeType, roots, roots, MPI_REPLACE)); 28140a96aa3bSJed Brown } 28159566063dSJacob Faibussowitsch PetscCall(PetscFree(rootType)); 28160a96aa3bSJed Brown 28170a96aa3bSJed Brown { 28180a96aa3bSJed Brown PetscInt numRoots; 28190a96aa3bSJed Brown PetscInt numLeaves; 28200a96aa3bSJed Brown PetscInt *leaves; 28210a96aa3bSJed Brown PetscSFNode *iremote; 28220a96aa3bSJed Brown /* count leaves */ 28230a96aa3bSJed Brown 28240a96aa3bSJed Brown numRoots = pEndC - pStartC; 28250a96aa3bSJed Brown 28260a96aa3bSJed Brown numLeaves = 0; 28270a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 28280a96aa3bSJed Brown if (roots[p - pStartF].index >= 0) numLeaves++; 28290a96aa3bSJed Brown } 28309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &leaves)); 28319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &iremote)); 28320a96aa3bSJed Brown numLeaves = 0; 28330a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 28340a96aa3bSJed Brown if (roots[p - pStartF].index >= 0) { 28350a96aa3bSJed Brown leaves[numLeaves] = p - pStartF; 28360a96aa3bSJed Brown iremote[numLeaves] = roots[p - pStartF]; 28370a96aa3bSJed Brown numLeaves++; 28380a96aa3bSJed Brown } 28390a96aa3bSJed Brown } 28409566063dSJacob Faibussowitsch PetscCall(PetscFree(roots)); 28419566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, sf)); 28420a96aa3bSJed Brown if (numLeaves == (pEndF - pStartF)) { 28439566063dSJacob Faibussowitsch PetscCall(PetscFree(leaves)); 28449566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sf, numRoots, numLeaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 28450a96aa3bSJed Brown } else { 28469566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sf, numRoots, numLeaves, leaves, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 28470a96aa3bSJed Brown } 28480a96aa3bSJed Brown } 28490a96aa3bSJed Brown if (formCids) { 28500a96aa3bSJed Brown PetscSF pointSF; 28510a96aa3bSJed Brown PetscInt child; 28520a96aa3bSJed Brown 28539566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(plexF, &refTree)); 28549566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(plexF, &pointSF)); 285557168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, cids, cids, MPI_MAX)); 285657168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, cids, cids, MPI_MAX)); 28570a96aa3bSJed Brown if (childIds) *childIds = cids; 285848a46eb9SPierre Jolivet for (child = 0; child < P4EST_CHILDREN; child++) PetscCall(DMPlexRestoreTransitiveClosure(refTree, child + 1, PETSC_TRUE, NULL, &childClosures[child])); 28599566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(refTree, 0, PETSC_TRUE, NULL, &rootClosure)); 28600a96aa3bSJed Brown } 28610a96aa3bSJed Brown } 28620a96aa3bSJed Brown if (saveInCoarse) { /* cache results */ 28639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*sf)); 28640a96aa3bSJed Brown pforestC->pointSelfToAdaptSF = *sf; 28650a96aa3bSJed Brown if (!childIds) { 28660a96aa3bSJed Brown pforestC->pointSelfToAdaptCids = cids; 28670a96aa3bSJed Brown } else { 28689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &pforestC->pointSelfToAdaptCids)); 28699566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(pforestC->pointSelfToAdaptCids, cids, pEndF - pStartF)); 28700a96aa3bSJed Brown } 28710a96aa3bSJed Brown } else if (saveInFine) { 28729566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*sf)); 28730a96aa3bSJed Brown pforestF->pointAdaptToSelfSF = *sf; 28740a96aa3bSJed Brown if (!childIds) { 28750a96aa3bSJed Brown pforestF->pointAdaptToSelfCids = cids; 28760a96aa3bSJed Brown } else { 28779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &pforestF->pointAdaptToSelfCids)); 28789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(pforestF->pointAdaptToSelfCids, cids, pEndF - pStartF)); 28790a96aa3bSJed Brown } 28800a96aa3bSJed Brown } 28819566063dSJacob Faibussowitsch PetscCall(PetscFree2(treeQuads, treeQuadCounts)); 28829566063dSJacob Faibussowitsch PetscCall(PetscFree(coverQuads)); 28839566063dSJacob Faibussowitsch PetscCall(PetscFree(closurePointsC)); 28849566063dSJacob Faibussowitsch PetscCall(PetscFree(closurePointsF)); 28859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&nodeClosureType)); 28869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&sfNodeReduce)); 28879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&nodeType)); 28883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28890a96aa3bSJed Brown } 28900a96aa3bSJed Brown 28910a96aa3bSJed Brown /* children are sf leaves of parents */ 2892d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetTransferSF_Internal(DM coarse, DM fine, const PetscInt dofPerDim[], PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[]) 2893d71ae5a4SJacob Faibussowitsch { 28940a96aa3bSJed Brown MPI_Comm comm; 2895d70f29a3SPierre Jolivet PetscMPIInt rank; 28960a96aa3bSJed Brown DM_Forest_pforest *pforestC, *pforestF; 28970a96aa3bSJed Brown DM plexC, plexF; 28980a96aa3bSJed Brown PetscInt pStartC, pEndC, pStartF, pEndF; 28990a96aa3bSJed Brown PetscSF pointTransferSF; 29000a96aa3bSJed Brown PetscBool allOnes = PETSC_TRUE; 29010a96aa3bSJed Brown 29020a96aa3bSJed Brown PetscFunctionBegin; 29030a96aa3bSJed Brown pforestC = (DM_Forest_pforest *)((DM_Forest *)coarse->data)->data; 29040a96aa3bSJed Brown pforestF = (DM_Forest_pforest *)((DM_Forest *)fine->data)->data; 290508401ef6SPierre Jolivet PetscCheck(pforestC->topo == pforestF->topo, PetscObjectComm((PetscObject)coarse), PETSC_ERR_ARG_INCOMP, "DM's must have the same base DM"); 29060a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)coarse); 29079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 29080a96aa3bSJed Brown 29090a96aa3bSJed Brown { 29100a96aa3bSJed Brown PetscInt i; 29110a96aa3bSJed Brown for (i = 0; i <= P4EST_DIM; i++) { 29120a96aa3bSJed Brown if (dofPerDim[i] != 1) { 29130a96aa3bSJed Brown allOnes = PETSC_FALSE; 29140a96aa3bSJed Brown break; 29150a96aa3bSJed Brown } 29160a96aa3bSJed Brown } 29170a96aa3bSJed Brown } 29189566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Point(coarse, fine, &pointTransferSF, transferIdent, childIds)); 29190a96aa3bSJed Brown if (allOnes) { 29200a96aa3bSJed Brown *sf = pointTransferSF; 29213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29220a96aa3bSJed Brown } 29230a96aa3bSJed Brown 29249566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(fine, &plexF)); 29259566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexF, &pStartF, &pEndF)); 29269566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(coarse, &plexC)); 29279566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexC, &pStartC, &pEndC)); 29280a96aa3bSJed Brown { 29290a96aa3bSJed Brown PetscInt numRoots; 29300a96aa3bSJed Brown PetscInt numLeaves; 29310a96aa3bSJed Brown const PetscInt *leaves; 29320a96aa3bSJed Brown const PetscSFNode *iremote; 29330a96aa3bSJed Brown PetscInt d; 29340a96aa3bSJed Brown PetscSection leafSection, rootSection; 29350a96aa3bSJed Brown 2936217f96c1SStefano Zampini /* count leaves */ 29379566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointTransferSF, &numRoots, &numLeaves, &leaves, &iremote)); 29389566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &rootSection)); 29399566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &leafSection)); 29409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection, pStartC, pEndC)); 29419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(leafSection, pStartF, pEndF)); 29420a96aa3bSJed Brown 29430a96aa3bSJed Brown for (d = 0; d <= P4EST_DIM; d++) { 29440a96aa3bSJed Brown PetscInt startC, endC, e; 29450a96aa3bSJed Brown 29469566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plexC, P4EST_DIM - d, &startC, &endC)); 294748a46eb9SPierre Jolivet for (e = startC; e < endC; e++) PetscCall(PetscSectionSetDof(rootSection, e, dofPerDim[d])); 29480a96aa3bSJed Brown } 29490a96aa3bSJed Brown 29500a96aa3bSJed Brown for (d = 0; d <= P4EST_DIM; d++) { 29510a96aa3bSJed Brown PetscInt startF, endF, e; 29520a96aa3bSJed Brown 29539566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plexF, P4EST_DIM - d, &startF, &endF)); 295448a46eb9SPierre Jolivet for (e = startF; e < endF; e++) PetscCall(PetscSectionSetDof(leafSection, e, dofPerDim[d])); 29550a96aa3bSJed Brown } 29560a96aa3bSJed Brown 29579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 29589566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(leafSection)); 29590a96aa3bSJed Brown { 29600a96aa3bSJed Brown PetscInt nroots, nleaves; 29610a96aa3bSJed Brown PetscInt *mine, i, p; 29620a96aa3bSJed Brown PetscInt *offsets, *offsetsRoot; 29630a96aa3bSJed Brown PetscSFNode *remote; 29640a96aa3bSJed Brown 29659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &offsets)); 29669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndC - pStartC, &offsetsRoot)); 296748a46eb9SPierre Jolivet for (p = pStartC; p < pEndC; p++) PetscCall(PetscSectionGetOffset(rootSection, p, &offsetsRoot[p - pStartC])); 29689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointTransferSF, MPIU_INT, offsetsRoot, offsets, MPI_REPLACE)); 29699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointTransferSF, MPIU_INT, offsetsRoot, offsets, MPI_REPLACE)); 29709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection, &nroots)); 29710a96aa3bSJed Brown nleaves = 0; 29720a96aa3bSJed Brown for (i = 0; i < numLeaves; i++) { 29730a96aa3bSJed Brown PetscInt leaf = leaves ? leaves[i] : i; 29740a96aa3bSJed Brown PetscInt dof; 29750a96aa3bSJed Brown 29769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, leaf, &dof)); 29770a96aa3bSJed Brown nleaves += dof; 29780a96aa3bSJed Brown } 29799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &mine)); 29809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &remote)); 29810a96aa3bSJed Brown nleaves = 0; 29820a96aa3bSJed Brown for (i = 0; i < numLeaves; i++) { 29830a96aa3bSJed Brown PetscInt leaf = leaves ? leaves[i] : i; 29840a96aa3bSJed Brown PetscInt dof; 29850a96aa3bSJed Brown PetscInt off, j; 29860a96aa3bSJed Brown 29879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, leaf, &dof)); 29889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection, leaf, &off)); 29890a96aa3bSJed Brown for (j = 0; j < dof; j++) { 29900a96aa3bSJed Brown remote[nleaves].rank = iremote[i].rank; 29910a96aa3bSJed Brown remote[nleaves].index = offsets[leaf] + j; 29920a96aa3bSJed Brown mine[nleaves++] = off + j; 29930a96aa3bSJed Brown } 29940a96aa3bSJed Brown } 29959566063dSJacob Faibussowitsch PetscCall(PetscFree(offsetsRoot)); 29969566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 29979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, sf)); 29989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sf, nroots, nleaves, mine, PETSC_OWN_POINTER, remote, PETSC_OWN_POINTER)); 29990a96aa3bSJed Brown } 30009566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 30019566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 30029566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pointTransferSF)); 30030a96aa3bSJed Brown } 30043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30050a96aa3bSJed Brown } 30060a96aa3bSJed Brown 3007d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetTransferSF(DM dmA, DM dmB, const PetscInt dofPerDim[], PetscSF *sfAtoB, PetscSF *sfBtoA) 3008d71ae5a4SJacob Faibussowitsch { 30090a96aa3bSJed Brown DM adaptA, adaptB; 30100a96aa3bSJed Brown DMAdaptFlag purpose; 30110a96aa3bSJed Brown 30120a96aa3bSJed Brown PetscFunctionBegin; 30139566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmA, &adaptA)); 30149566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmB, &adaptB)); 30150a96aa3bSJed Brown /* it is more efficient when the coarser mesh is the first argument: reorder if we know one is coarser than the other */ 30160a96aa3bSJed Brown if (adaptA && adaptA->data == dmB->data) { /* dmA was adapted from dmB */ 30179566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmA, &purpose)); 30180a96aa3bSJed Brown if (purpose == DM_ADAPT_REFINE) { 30199566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB)); 30203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30210a96aa3bSJed Brown } 30220a96aa3bSJed Brown } else if (adaptB && adaptB->data == dmA->data) { /* dmB was adapted from dmA */ 30239566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmB, &purpose)); 30240a96aa3bSJed Brown if (purpose == DM_ADAPT_COARSEN) { 30259566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB)); 30263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30270a96aa3bSJed Brown } 30280a96aa3bSJed Brown } 30291baa6e33SBarry Smith if (sfAtoB) PetscCall(DMPforestGetTransferSF_Internal(dmA, dmB, dofPerDim, sfAtoB, PETSC_TRUE, NULL)); 30301baa6e33SBarry Smith if (sfBtoA) PetscCall(DMPforestGetTransferSF_Internal(dmB, dmA, dofPerDim, sfBtoA, (PetscBool)(sfAtoB == NULL), NULL)); 30313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30320a96aa3bSJed Brown } 30330a96aa3bSJed Brown 3034d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestLabelsInitialize(DM dm, DM plex) 3035d71ae5a4SJacob Faibussowitsch { 30360a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 30370a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 30380a96aa3bSJed Brown PetscInt cLocalStart, cLocalEnd, cStart, cEnd, fStart, fEnd, eStart, eEnd, vStart, vEnd; 30390a96aa3bSJed Brown PetscInt cStartBase, cEndBase, fStartBase, fEndBase, vStartBase, vEndBase, eStartBase, eEndBase; 30400a96aa3bSJed Brown PetscInt pStart, pEnd, pStartBase, pEndBase, p; 30410a96aa3bSJed Brown DM base; 30420a96aa3bSJed Brown PetscInt *star = NULL, starSize; 30430a96aa3bSJed Brown DMLabelLink next = dm->labels; 30440a96aa3bSJed Brown PetscInt guess = 0; 30450a96aa3bSJed Brown p4est_topidx_t num_trees = pforest->topo->conn->num_trees; 30460a96aa3bSJed Brown 30470a96aa3bSJed Brown PetscFunctionBegin; 30480a96aa3bSJed Brown pforest->labelsFinalized = PETSC_TRUE; 30490a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 30500a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 30519566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 30520a96aa3bSJed Brown if (!base) { 30530a96aa3bSJed Brown if (pforest->ghostName) { /* insert a label to make the boundaries, with stratum values denoting which face of the element touches the boundary */ 30540a96aa3bSJed Brown p4est_connectivity_t *conn = pforest->topo->conn; 30550a96aa3bSJed Brown p4est_t *p4est = pforest->forest; 30560a96aa3bSJed Brown p4est_tree_t *trees = (p4est_tree_t *)p4est->trees->array; 30570a96aa3bSJed Brown p4est_topidx_t t, flt = p4est->first_local_tree; 30580a96aa3bSJed Brown p4est_topidx_t llt = pforest->forest->last_local_tree; 30590a96aa3bSJed Brown DMLabel ghostLabel; 30600a96aa3bSJed Brown PetscInt c; 30610a96aa3bSJed Brown 30629566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(plex, pforest->ghostName)); 30639566063dSJacob Faibussowitsch PetscCall(DMGetLabel(plex, pforest->ghostName, &ghostLabel)); 30640a96aa3bSJed Brown for (c = cLocalStart, t = flt; t <= llt; t++) { 30650a96aa3bSJed Brown p4est_tree_t *tree = &trees[t]; 30660a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 30670a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 30680a96aa3bSJed Brown PetscInt q; 30690a96aa3bSJed Brown 30700a96aa3bSJed Brown for (q = 0; q < numQuads; q++, c++) { 30710a96aa3bSJed Brown p4est_quadrant_t *quad = &quads[q]; 30720a96aa3bSJed Brown PetscInt f; 30730a96aa3bSJed Brown 30740a96aa3bSJed Brown for (f = 0; f < P4EST_FACES; f++) { 30750a96aa3bSJed Brown p4est_quadrant_t neigh; 30760a96aa3bSJed Brown int isOutside; 30770a96aa3bSJed Brown 3078792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_face_neighbor, (quad, f, &neigh)); 3079792fecdfSBarry Smith PetscCallP4estReturn(isOutside, p4est_quadrant_is_outside_face, (&neigh)); 30800a96aa3bSJed Brown if (isOutside) { 30810a96aa3bSJed Brown p4est_topidx_t nt; 30820a96aa3bSJed Brown PetscInt nf; 30830a96aa3bSJed Brown 30840a96aa3bSJed Brown nt = conn->tree_to_tree[t * P4EST_FACES + f]; 30850a96aa3bSJed Brown nf = (PetscInt)conn->tree_to_face[t * P4EST_FACES + f]; 30860a96aa3bSJed Brown nf = nf % P4EST_FACES; 30870a96aa3bSJed Brown if (nt == t && nf == f) { 30880a96aa3bSJed Brown PetscInt plexF = P4estFaceToPetscFace[f]; 30890a96aa3bSJed Brown const PetscInt *cone; 30900a96aa3bSJed Brown 30919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex, c, &cone)); 30929566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, cone[plexF], plexF + 1)); 30930a96aa3bSJed Brown } 30940a96aa3bSJed Brown } 30950a96aa3bSJed Brown } 30960a96aa3bSJed Brown } 30970a96aa3bSJed Brown } 30980a96aa3bSJed Brown } 30993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31000a96aa3bSJed Brown } 31019566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(base, 0, &cStartBase, &cEndBase)); 31029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(base, 1, &fStartBase, &fEndBase)); 31039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(base, P4EST_DIM - 1, &eStartBase, &eEndBase)); 31049566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(base, 0, &vStartBase, &vEndBase)); 31050a96aa3bSJed Brown 31069566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plex, 0, &cStart, &cEnd)); 31079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plex, 1, &fStart, &fEnd)); 31089566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plex, P4EST_DIM - 1, &eStart, &eEnd)); 31099566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(plex, 0, &vStart, &vEnd)); 31100a96aa3bSJed Brown 31119566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &pStart, &pEnd)); 31129566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(base, &pStartBase, &pEndBase)); 31130a96aa3bSJed Brown /* go through the mesh: use star to find a quadrant that borders a point. Use the closure to determine the 31140a96aa3bSJed Brown * orientation of the quadrant relative to that point. Use that to relate the point to the numbering in the base 31150a96aa3bSJed Brown * mesh, and extract a label value (since the base mesh is redundantly distributed, can be found locally). */ 31160a96aa3bSJed Brown while (next) { 31170a96aa3bSJed Brown DMLabel baseLabel; 31180a96aa3bSJed Brown DMLabel label = next->label; 31190a96aa3bSJed Brown PetscBool isDepth, isCellType, isGhost, isVTK, isSpmap; 31200a96aa3bSJed Brown const char *name; 31210a96aa3bSJed Brown 31229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 31239566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 31240a96aa3bSJed Brown if (isDepth) { 31250a96aa3bSJed Brown next = next->next; 31260a96aa3bSJed Brown continue; 31270a96aa3bSJed Brown } 31289566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &isCellType)); 31290a96aa3bSJed Brown if (isCellType) { 31300a96aa3bSJed Brown next = next->next; 31310a96aa3bSJed Brown continue; 31320a96aa3bSJed Brown } 31339566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "ghost", &isGhost)); 31340a96aa3bSJed Brown if (isGhost) { 31350a96aa3bSJed Brown next = next->next; 31360a96aa3bSJed Brown continue; 31370a96aa3bSJed Brown } 31389566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "vtk", &isVTK)); 31390a96aa3bSJed Brown if (isVTK) { 31400a96aa3bSJed Brown next = next->next; 31410a96aa3bSJed Brown continue; 31420a96aa3bSJed Brown } 31439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "_forest_base_subpoint_map", &isSpmap)); 31440a96aa3bSJed Brown if (!isSpmap) { 31459566063dSJacob Faibussowitsch PetscCall(DMGetLabel(base, name, &baseLabel)); 31460a96aa3bSJed Brown if (!baseLabel) { 31470a96aa3bSJed Brown next = next->next; 31480a96aa3bSJed Brown continue; 31490a96aa3bSJed Brown } 31509566063dSJacob Faibussowitsch PetscCall(DMLabelCreateIndex(baseLabel, pStartBase, pEndBase)); 31510a96aa3bSJed Brown } else baseLabel = NULL; 31520a96aa3bSJed Brown 31530a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 31540a96aa3bSJed Brown PetscInt s, c = -1, l; 31550a96aa3bSJed Brown PetscInt *closure = NULL, closureSize; 31560a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 31570a96aa3bSJed Brown p4est_tree_t *trees = (p4est_tree_t *)pforest->forest->trees->array; 31580a96aa3bSJed Brown p4est_quadrant_t *q; 31590a96aa3bSJed Brown PetscInt t, val; 31600a96aa3bSJed Brown PetscBool zerosupportpoint = PETSC_FALSE; 31610a96aa3bSJed Brown 31629566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, p, PETSC_FALSE, &starSize, &star)); 31630a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 31640a96aa3bSJed Brown PetscInt point = star[2 * s]; 31650a96aa3bSJed Brown 31660a96aa3bSJed Brown if (cStart <= point && point < cEnd) { 31679566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, point, PETSC_TRUE, &closureSize, &closure)); 31680a96aa3bSJed Brown for (l = 0; l < closureSize; l++) { 31690a96aa3bSJed Brown PetscInt qParent = closure[2 * l], q, pp = p, pParent = p; 31700a96aa3bSJed Brown do { /* check parents of q */ 31710a96aa3bSJed Brown q = qParent; 31720a96aa3bSJed Brown if (q == p) { 31730a96aa3bSJed Brown c = point; 31740a96aa3bSJed Brown break; 31750a96aa3bSJed Brown } 31769566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &qParent, NULL)); 31770a96aa3bSJed Brown } while (qParent != q); 31780a96aa3bSJed Brown if (c != -1) break; 31799566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, pp, &pParent, NULL)); 31800a96aa3bSJed Brown q = closure[2 * l]; 31810a96aa3bSJed Brown while (pParent != pp) { /* check parents of p */ 31820a96aa3bSJed Brown pp = pParent; 31830a96aa3bSJed Brown if (pp == q) { 31840a96aa3bSJed Brown c = point; 31850a96aa3bSJed Brown break; 31860a96aa3bSJed Brown } 31879566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, pp, &pParent, NULL)); 31880a96aa3bSJed Brown } 31890a96aa3bSJed Brown if (c != -1) break; 31900a96aa3bSJed Brown } 31919566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, point, PETSC_TRUE, NULL, &closure)); 31920a96aa3bSJed Brown if (l < closureSize) break; 31930a96aa3bSJed Brown } else { 31940a96aa3bSJed Brown PetscInt supportSize; 31950a96aa3bSJed Brown 31969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(plex, point, &supportSize)); 31970a96aa3bSJed Brown zerosupportpoint = (PetscBool)(zerosupportpoint || !supportSize); 31980a96aa3bSJed Brown } 31990a96aa3bSJed Brown } 32000a96aa3bSJed Brown if (c < 0) { 32010a96aa3bSJed Brown const char *prefix; 32020a96aa3bSJed Brown PetscBool print = PETSC_FALSE; 32030a96aa3bSJed Brown 32049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 32059566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options, prefix, "-dm_forest_print_label_error", &print, NULL)); 32060a96aa3bSJed Brown if (print) { 32070a96aa3bSJed Brown PetscInt i; 32080a96aa3bSJed Brown 320963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Failed to find cell with point %" PetscInt_FMT " in its closure for label %s (starSize %" PetscInt_FMT ")\n", PetscGlobalRank, p, baseLabel ? ((PetscObject)baseLabel)->name : "_forest_base_subpoint_map", starSize)); 321063a3b9bcSJacob Faibussowitsch for (i = 0; i < starSize; i++) PetscCall(PetscPrintf(PETSC_COMM_SELF, " star[%" PetscInt_FMT "] = %" PetscInt_FMT ",%" PetscInt_FMT "\n", i, star[2 * i], star[2 * i + 1])); 32110a96aa3bSJed Brown } 32129566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, p, PETSC_FALSE, NULL, &star)); 32130a96aa3bSJed Brown if (zerosupportpoint) continue; 32149371c9d4SSatish Balay else 32159371c9d4SSatish Balay SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Failed to find cell with point %" PetscInt_FMT " in its closure for label %s. Rerun with -dm_forest_print_label_error for more information", p, baseLabel ? ((PetscObject)baseLabel)->name : "_forest_base_subpoint_map"); 32160a96aa3bSJed Brown } 32179566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, p, PETSC_FALSE, NULL, &star)); 32180a96aa3bSJed Brown 32190a96aa3bSJed Brown if (c < cLocalStart) { 32200a96aa3bSJed Brown /* get from the beginning of the ghost layer */ 3221f4f49eeaSPierre Jolivet q = &ghosts[c]; 32220a96aa3bSJed Brown t = (PetscInt)q->p.which_tree; 32230a96aa3bSJed Brown } else if (c < cLocalEnd) { 32240a96aa3bSJed Brown PetscInt lo = 0, hi = num_trees; 32250a96aa3bSJed Brown /* get from local quadrants: have to find the right tree */ 32260a96aa3bSJed Brown 32270a96aa3bSJed Brown c -= cLocalStart; 32280a96aa3bSJed Brown 32290a96aa3bSJed Brown do { 32300a96aa3bSJed Brown p4est_tree_t *tree; 32310a96aa3bSJed Brown 32321dca8a05SBarry Smith PetscCheck(guess >= lo && guess < num_trees && lo < hi, PETSC_COMM_SELF, PETSC_ERR_PLIB, "failed binary search"); 32330a96aa3bSJed Brown tree = &trees[guess]; 32340a96aa3bSJed Brown if (c < tree->quadrants_offset) { 32350a96aa3bSJed Brown hi = guess; 32360a96aa3bSJed Brown } else if (c < tree->quadrants_offset + (PetscInt)tree->quadrants.elem_count) { 32370a96aa3bSJed Brown q = &((p4est_quadrant_t *)tree->quadrants.array)[c - (PetscInt)tree->quadrants_offset]; 32380a96aa3bSJed Brown t = guess; 32390a96aa3bSJed Brown break; 32400a96aa3bSJed Brown } else { 32410a96aa3bSJed Brown lo = guess + 1; 32420a96aa3bSJed Brown } 32430a96aa3bSJed Brown guess = lo + (hi - lo) / 2; 32440a96aa3bSJed Brown } while (1); 32450a96aa3bSJed Brown } else { 32460a96aa3bSJed Brown /* get from the end of the ghost layer */ 32470a96aa3bSJed Brown c -= (cLocalEnd - cLocalStart); 32480a96aa3bSJed Brown 3249f4f49eeaSPierre Jolivet q = &ghosts[c]; 32500a96aa3bSJed Brown t = (PetscInt)q->p.which_tree; 32510a96aa3bSJed Brown } 32520a96aa3bSJed Brown 32530a96aa3bSJed Brown if (l == 0) { /* cell */ 32540a96aa3bSJed Brown if (baseLabel) { 32559566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val)); 32560a96aa3bSJed Brown } else { 32570a96aa3bSJed Brown val = t + cStartBase; 32580a96aa3bSJed Brown } 32599566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 32600a96aa3bSJed Brown } else if (l >= 1 && l < 1 + P4EST_FACES) { /* facet */ 32610a96aa3bSJed Brown p4est_quadrant_t nq; 32620a96aa3bSJed Brown int isInside; 32630a96aa3bSJed Brown 32640a96aa3bSJed Brown l = PetscFaceToP4estFace[l - 1]; 3265792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_face_neighbor, (q, l, &nq)); 3266792fecdfSBarry Smith PetscCallP4estReturn(isInside, p4est_quadrant_is_inside_root, (&nq)); 32670a96aa3bSJed Brown if (isInside) { 32680a96aa3bSJed Brown /* this facet is in the interior of a tree, so it inherits the label of the tree */ 32690a96aa3bSJed Brown if (baseLabel) { 32709566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val)); 32710a96aa3bSJed Brown } else { 32720a96aa3bSJed Brown val = t + cStartBase; 32730a96aa3bSJed Brown } 32749566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 32750a96aa3bSJed Brown } else { 32760a96aa3bSJed Brown PetscInt f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + l]; 32770a96aa3bSJed Brown 32780a96aa3bSJed Brown if (baseLabel) { 32799566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, f + fStartBase, &val)); 32800a96aa3bSJed Brown } else { 32810a96aa3bSJed Brown val = f + fStartBase; 32820a96aa3bSJed Brown } 32839566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 32840a96aa3bSJed Brown } 32850a96aa3bSJed Brown #if defined(P4_TO_P8) 32860a96aa3bSJed Brown } else if (l >= 1 + P4EST_FACES && l < 1 + P4EST_FACES + P8EST_EDGES) { /* edge */ 32870a96aa3bSJed Brown p4est_quadrant_t nq; 32880a96aa3bSJed Brown int isInside; 32890a96aa3bSJed Brown 32900a96aa3bSJed Brown l = PetscEdgeToP4estEdge[l - (1 + P4EST_FACES)]; 3291792fecdfSBarry Smith PetscCallP4est(p8est_quadrant_edge_neighbor, (q, l, &nq)); 3292792fecdfSBarry Smith PetscCallP4estReturn(isInside, p4est_quadrant_is_inside_root, (&nq)); 32930a96aa3bSJed Brown if (isInside) { 32940a96aa3bSJed Brown /* this edge is in the interior of a tree, so it inherits the label of the tree */ 32950a96aa3bSJed Brown if (baseLabel) { 32969566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val)); 32970a96aa3bSJed Brown } else { 32980a96aa3bSJed Brown val = t + cStartBase; 32990a96aa3bSJed Brown } 33009566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33010a96aa3bSJed Brown } else { 33020a96aa3bSJed Brown int isOutsideFace; 33030a96aa3bSJed Brown 3304792fecdfSBarry Smith PetscCallP4estReturn(isOutsideFace, p4est_quadrant_is_outside_face, (&nq)); 33050a96aa3bSJed Brown if (isOutsideFace) { 33060a96aa3bSJed Brown PetscInt f; 33070a96aa3bSJed Brown 33080a96aa3bSJed Brown if (nq.x < 0) { 33090a96aa3bSJed Brown f = 0; 33100a96aa3bSJed Brown } else if (nq.x >= P4EST_ROOT_LEN) { 33110a96aa3bSJed Brown f = 1; 33120a96aa3bSJed Brown } else if (nq.y < 0) { 33130a96aa3bSJed Brown f = 2; 33140a96aa3bSJed Brown } else if (nq.y >= P4EST_ROOT_LEN) { 33150a96aa3bSJed Brown f = 3; 33160a96aa3bSJed Brown } else if (nq.z < 0) { 33170a96aa3bSJed Brown f = 4; 33180a96aa3bSJed Brown } else { 33190a96aa3bSJed Brown f = 5; 33200a96aa3bSJed Brown } 33210a96aa3bSJed Brown f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f]; 33220a96aa3bSJed Brown if (baseLabel) { 33239566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, f + fStartBase, &val)); 33240a96aa3bSJed Brown } else { 33250a96aa3bSJed Brown val = f + fStartBase; 33260a96aa3bSJed Brown } 33279566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33280a96aa3bSJed Brown } else { /* the quadrant edge corresponds to the tree edge */ 33290a96aa3bSJed Brown PetscInt e = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + l]; 33300a96aa3bSJed Brown 33310a96aa3bSJed Brown if (baseLabel) { 33329566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, e + eStartBase, &val)); 33330a96aa3bSJed Brown } else { 33340a96aa3bSJed Brown val = e + eStartBase; 33350a96aa3bSJed Brown } 33369566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33370a96aa3bSJed Brown } 33380a96aa3bSJed Brown } 33390a96aa3bSJed Brown #endif 33400a96aa3bSJed Brown } else { /* vertex */ 33410a96aa3bSJed Brown p4est_quadrant_t nq; 33420a96aa3bSJed Brown int isInside; 33430a96aa3bSJed Brown 33440a96aa3bSJed Brown #if defined(P4_TO_P8) 33450a96aa3bSJed Brown l = PetscVertToP4estVert[l - (1 + P4EST_FACES + P8EST_EDGES)]; 33460a96aa3bSJed Brown #else 33470a96aa3bSJed Brown l = PetscVertToP4estVert[l - (1 + P4EST_FACES)]; 33480a96aa3bSJed Brown #endif 3349792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_corner_neighbor, (q, l, &nq)); 3350792fecdfSBarry Smith PetscCallP4estReturn(isInside, p4est_quadrant_is_inside_root, (&nq)); 33510a96aa3bSJed Brown if (isInside) { 33520a96aa3bSJed Brown if (baseLabel) { 33539566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val)); 33540a96aa3bSJed Brown } else { 33550a96aa3bSJed Brown val = t + cStartBase; 33560a96aa3bSJed Brown } 33579566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33580a96aa3bSJed Brown } else { 33590a96aa3bSJed Brown int isOutside; 33600a96aa3bSJed Brown 3361792fecdfSBarry Smith PetscCallP4estReturn(isOutside, p4est_quadrant_is_outside_face, (&nq)); 33620a96aa3bSJed Brown if (isOutside) { 33630a96aa3bSJed Brown PetscInt f = -1; 33640a96aa3bSJed Brown 33650a96aa3bSJed Brown if (nq.x < 0) { 33660a96aa3bSJed Brown f = 0; 33670a96aa3bSJed Brown } else if (nq.x >= P4EST_ROOT_LEN) { 33680a96aa3bSJed Brown f = 1; 33690a96aa3bSJed Brown } else if (nq.y < 0) { 33700a96aa3bSJed Brown f = 2; 33710a96aa3bSJed Brown } else if (nq.y >= P4EST_ROOT_LEN) { 33720a96aa3bSJed Brown f = 3; 33730a96aa3bSJed Brown #if defined(P4_TO_P8) 33740a96aa3bSJed Brown } else if (nq.z < 0) { 33750a96aa3bSJed Brown f = 4; 33760a96aa3bSJed Brown } else { 33770a96aa3bSJed Brown f = 5; 33780a96aa3bSJed Brown #endif 33790a96aa3bSJed Brown } 33800a96aa3bSJed Brown f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f]; 33810a96aa3bSJed Brown if (baseLabel) { 33829566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, f + fStartBase, &val)); 33830a96aa3bSJed Brown } else { 33840a96aa3bSJed Brown val = f + fStartBase; 33850a96aa3bSJed Brown } 33869566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33870a96aa3bSJed Brown continue; 33880a96aa3bSJed Brown } 33890a96aa3bSJed Brown #if defined(P4_TO_P8) 3390792fecdfSBarry Smith PetscCallP4estReturn(isOutside, p8est_quadrant_is_outside_edge, (&nq)); 33910a96aa3bSJed Brown if (isOutside) { 33920a96aa3bSJed Brown /* outside edge */ 33930a96aa3bSJed Brown PetscInt e = -1; 33940a96aa3bSJed Brown 33950a96aa3bSJed Brown if (nq.x >= 0 && nq.x < P4EST_ROOT_LEN) { 33960a96aa3bSJed Brown if (nq.z < 0) { 33970a96aa3bSJed Brown if (nq.y < 0) { 33980a96aa3bSJed Brown e = 0; 33990a96aa3bSJed Brown } else { 34000a96aa3bSJed Brown e = 1; 34010a96aa3bSJed Brown } 34020a96aa3bSJed Brown } else { 34030a96aa3bSJed Brown if (nq.y < 0) { 34040a96aa3bSJed Brown e = 2; 34050a96aa3bSJed Brown } else { 34060a96aa3bSJed Brown e = 3; 34070a96aa3bSJed Brown } 34080a96aa3bSJed Brown } 34090a96aa3bSJed Brown } else if (nq.y >= 0 && nq.y < P4EST_ROOT_LEN) { 34100a96aa3bSJed Brown if (nq.z < 0) { 34110a96aa3bSJed Brown if (nq.x < 0) { 34120a96aa3bSJed Brown e = 4; 34130a96aa3bSJed Brown } else { 34140a96aa3bSJed Brown e = 5; 34150a96aa3bSJed Brown } 34160a96aa3bSJed Brown } else { 34170a96aa3bSJed Brown if (nq.x < 0) { 34180a96aa3bSJed Brown e = 6; 34190a96aa3bSJed Brown } else { 34200a96aa3bSJed Brown e = 7; 34210a96aa3bSJed Brown } 34220a96aa3bSJed Brown } 34230a96aa3bSJed Brown } else { 34240a96aa3bSJed Brown if (nq.y < 0) { 34250a96aa3bSJed Brown if (nq.x < 0) { 34260a96aa3bSJed Brown e = 8; 34270a96aa3bSJed Brown } else { 34280a96aa3bSJed Brown e = 9; 34290a96aa3bSJed Brown } 34300a96aa3bSJed Brown } else { 34310a96aa3bSJed Brown if (nq.x < 0) { 34320a96aa3bSJed Brown e = 10; 34330a96aa3bSJed Brown } else { 34340a96aa3bSJed Brown e = 11; 34350a96aa3bSJed Brown } 34360a96aa3bSJed Brown } 34370a96aa3bSJed Brown } 34380a96aa3bSJed Brown 34390a96aa3bSJed Brown e = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + e]; 34400a96aa3bSJed Brown if (baseLabel) { 34419566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, e + eStartBase, &val)); 34420a96aa3bSJed Brown } else { 34430a96aa3bSJed Brown val = e + eStartBase; 34440a96aa3bSJed Brown } 34459566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 34460a96aa3bSJed Brown continue; 34470a96aa3bSJed Brown } 34480a96aa3bSJed Brown #endif 34490a96aa3bSJed Brown { 34500a96aa3bSJed Brown /* outside vertex: same corner as quadrant corner */ 34510a96aa3bSJed Brown PetscInt v = pforest->topo->conn->tree_to_corner[P4EST_CHILDREN * t + l]; 34520a96aa3bSJed Brown 34530a96aa3bSJed Brown if (baseLabel) { 34549566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, v + vStartBase, &val)); 34550a96aa3bSJed Brown } else { 34560a96aa3bSJed Brown val = v + vStartBase; 34570a96aa3bSJed Brown } 34589566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 34590a96aa3bSJed Brown } 34600a96aa3bSJed Brown } 34610a96aa3bSJed Brown } 34620a96aa3bSJed Brown } 34630a96aa3bSJed Brown next = next->next; 34640a96aa3bSJed Brown } 34653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34660a96aa3bSJed Brown } 34670a96aa3bSJed Brown 3468d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestLabelsFinalize(DM dm, DM plex) 3469d71ae5a4SJacob Faibussowitsch { 34700a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 34710a96aa3bSJed Brown DM adapt; 34720a96aa3bSJed Brown 34730a96aa3bSJed Brown PetscFunctionBegin; 34743ba16761SJacob Faibussowitsch if (pforest->labelsFinalized) PetscFunctionReturn(PETSC_SUCCESS); 34750a96aa3bSJed Brown pforest->labelsFinalized = PETSC_TRUE; 34769566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dm, &adapt)); 34770a96aa3bSJed Brown if (!adapt) { 34780a96aa3bSJed Brown /* Initialize labels from the base dm */ 34799566063dSJacob Faibussowitsch PetscCall(DMPforestLabelsInitialize(dm, plex)); 34800a96aa3bSJed Brown } else { 34810a96aa3bSJed Brown PetscInt dofPerDim[4] = {1, 1, 1, 1}; 34820a96aa3bSJed Brown PetscSF transferForward, transferBackward, pointSF; 34830a96aa3bSJed Brown PetscInt pStart, pEnd, pStartA, pEndA; 34840a96aa3bSJed Brown PetscInt *values, *adaptValues; 34850a96aa3bSJed Brown DMLabelLink next = adapt->labels; 34860a96aa3bSJed Brown DMLabel adaptLabel; 34870a96aa3bSJed Brown DM adaptPlex; 34880a96aa3bSJed Brown 34899566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityLabel(dm, &adaptLabel)); 34909566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(adapt, &adaptPlex)); 34919566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF(adapt, dm, dofPerDim, &transferForward, &transferBackward)); 34929566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &pStart, &pEnd)); 34939566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(adaptPlex, &pStartA, &pEndA)); 34949566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &values, pEndA - pStartA, &adaptValues)); 34959566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(plex, &pointSF)); 34960a96aa3bSJed Brown if (PetscDefined(USE_DEBUG)) { 34970a96aa3bSJed Brown PetscInt p; 34980a96aa3bSJed Brown for (p = pStartA; p < pEndA; p++) adaptValues[p - pStartA] = -1; 34990a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) values[p - pStart] = -2; 35000a96aa3bSJed Brown if (transferForward) { 35019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE)); 35029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE)); 35030a96aa3bSJed Brown } 35040a96aa3bSJed Brown if (transferBackward) { 350557168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX)); 350657168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX)); 35070a96aa3bSJed Brown } 35080a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 35090a96aa3bSJed Brown PetscInt q = p, parent; 35100a96aa3bSJed Brown 35119566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL)); 35120a96aa3bSJed Brown while (parent != q) { 35130a96aa3bSJed Brown if (values[parent] == -2) values[parent] = values[q]; 35140a96aa3bSJed Brown q = parent; 35159566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL)); 35160a96aa3bSJed Brown } 35170a96aa3bSJed Brown } 351857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, values, values, MPI_MAX)); 351957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, values, values, MPI_MAX)); 35209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF, MPIU_INT, values, values, MPI_REPLACE)); 35219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF, MPIU_INT, values, values, MPI_REPLACE)); 3522ad540459SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCheck(values[p - pStart] != -2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "uncovered point %" PetscInt_FMT, p); 35230a96aa3bSJed Brown } 35240a96aa3bSJed Brown while (next) { 35250a96aa3bSJed Brown DMLabel nextLabel = next->label; 35260a96aa3bSJed Brown const char *name; 35270a96aa3bSJed Brown PetscBool isDepth, isCellType, isGhost, isVTK; 35280a96aa3bSJed Brown DMLabel label; 35290a96aa3bSJed Brown PetscInt p; 35300a96aa3bSJed Brown 35319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)nextLabel, &name)); 35329566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 35330a96aa3bSJed Brown if (isDepth) { 35340a96aa3bSJed Brown next = next->next; 35350a96aa3bSJed Brown continue; 35360a96aa3bSJed Brown } 35379566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &isCellType)); 35380a96aa3bSJed Brown if (isCellType) { 35390a96aa3bSJed Brown next = next->next; 35400a96aa3bSJed Brown continue; 35410a96aa3bSJed Brown } 35429566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "ghost", &isGhost)); 35430a96aa3bSJed Brown if (isGhost) { 35440a96aa3bSJed Brown next = next->next; 35450a96aa3bSJed Brown continue; 35460a96aa3bSJed Brown } 35479566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "vtk", &isVTK)); 35480a96aa3bSJed Brown if (isVTK) { 35490a96aa3bSJed Brown next = next->next; 35500a96aa3bSJed Brown continue; 35510a96aa3bSJed Brown } 35520a96aa3bSJed Brown if (nextLabel == adaptLabel) { 35530a96aa3bSJed Brown next = next->next; 35540a96aa3bSJed Brown continue; 35550a96aa3bSJed Brown } 35560a96aa3bSJed Brown /* label was created earlier */ 35579566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 355848a46eb9SPierre Jolivet for (p = pStartA; p < pEndA; p++) PetscCall(DMLabelGetValue(nextLabel, p, &adaptValues[p])); 3559*1690c2aeSBarry Smith for (p = pStart; p < pEnd; p++) values[p] = PETSC_INT_MIN; 35600a96aa3bSJed Brown 35611baa6e33SBarry Smith if (transferForward) PetscCall(PetscSFBcastBegin(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE)); 356257168dbeSPierre Jolivet if (transferBackward) PetscCall(PetscSFReduceBegin(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX)); 35631baa6e33SBarry Smith if (transferForward) PetscCall(PetscSFBcastEnd(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE)); 356457168dbeSPierre Jolivet if (transferBackward) PetscCall(PetscSFReduceEnd(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX)); 35650a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 35660a96aa3bSJed Brown PetscInt q = p, parent; 35670a96aa3bSJed Brown 35689566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL)); 35690a96aa3bSJed Brown while (parent != q) { 3570*1690c2aeSBarry Smith if (values[parent] == PETSC_INT_MIN) values[parent] = values[q]; 35710a96aa3bSJed Brown q = parent; 35729566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL)); 35730a96aa3bSJed Brown } 35740a96aa3bSJed Brown } 357557168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, values, values, MPI_MAX)); 357657168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, values, values, MPI_MAX)); 35779566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF, MPIU_INT, values, values, MPI_REPLACE)); 35789566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF, MPIU_INT, values, values, MPI_REPLACE)); 35790a96aa3bSJed Brown 358048a46eb9SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCall(DMLabelSetValue(label, p, values[p])); 35810a96aa3bSJed Brown next = next->next; 35820a96aa3bSJed Brown } 35839566063dSJacob Faibussowitsch PetscCall(PetscFree2(values, adaptValues)); 35849566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&transferForward)); 35859566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&transferBackward)); 35860a96aa3bSJed Brown pforest->labelsFinalized = PETSC_TRUE; 35870a96aa3bSJed Brown } 35883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35890a96aa3bSJed Brown } 35900a96aa3bSJed Brown 3591d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestMapCoordinates_Cell(DM plex, p4est_geometry_t *geom, PetscInt cell, p4est_quadrant_t *q, p4est_topidx_t t, p4est_connectivity_t *conn, PetscScalar *coords) 3592d71ae5a4SJacob Faibussowitsch { 35930a96aa3bSJed Brown PetscInt closureSize, c, coordStart, coordEnd, coordDim; 35940a96aa3bSJed Brown PetscInt *closure = NULL; 35950a96aa3bSJed Brown PetscSection coordSec; 35960a96aa3bSJed Brown 35970a96aa3bSJed Brown PetscFunctionBegin; 35989566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(plex, &coordSec)); 35999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSec, &coordStart, &coordEnd)); 36009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(plex, &coordDim)); 36019566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, cell, PETSC_TRUE, &closureSize, &closure)); 36020a96aa3bSJed Brown for (c = 0; c < closureSize; c++) { 36030a96aa3bSJed Brown PetscInt point = closure[2 * c]; 36040a96aa3bSJed Brown 36050a96aa3bSJed Brown if (point >= coordStart && point < coordEnd) { 36060a96aa3bSJed Brown PetscInt dof, off; 36070a96aa3bSJed Brown PetscInt nCoords, i; 36089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSec, point, &dof)); 360908401ef6SPierre Jolivet PetscCheck(dof % coordDim == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Did not understand coordinate layout"); 36100a96aa3bSJed Brown nCoords = dof / coordDim; 36119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSec, point, &off)); 36120a96aa3bSJed Brown for (i = 0; i < nCoords; i++) { 36130a96aa3bSJed Brown PetscScalar *coord = &coords[off + i * coordDim]; 36140a96aa3bSJed Brown double coordP4est[3] = {0.}; 36150a96aa3bSJed Brown double coordP4estMapped[3] = {0.}; 36160a96aa3bSJed Brown PetscInt j; 36170a96aa3bSJed Brown PetscReal treeCoords[P4EST_CHILDREN][3] = {{0.}}; 36180a96aa3bSJed Brown PetscReal eta[3] = {0.}; 36190a96aa3bSJed Brown PetscInt numRounds = 10; 36200a96aa3bSJed Brown PetscReal coordGuess[3] = {0.}; 36210a96aa3bSJed Brown 36220a96aa3bSJed Brown eta[0] = (PetscReal)q->x / (PetscReal)P4EST_ROOT_LEN; 36230a96aa3bSJed Brown eta[1] = (PetscReal)q->y / (PetscReal)P4EST_ROOT_LEN; 36240a96aa3bSJed Brown #if defined(P4_TO_P8) 36250a96aa3bSJed Brown eta[2] = (PetscReal)q->z / (PetscReal)P4EST_ROOT_LEN; 36260a96aa3bSJed Brown #endif 36270a96aa3bSJed Brown 36280a96aa3bSJed Brown for (j = 0; j < P4EST_CHILDREN; j++) { 36290a96aa3bSJed Brown PetscInt k; 36300a96aa3bSJed Brown 36310a96aa3bSJed Brown for (k = 0; k < 3; k++) treeCoords[j][k] = conn->vertices[3 * conn->tree_to_vertex[P4EST_CHILDREN * t + j] + k]; 36320a96aa3bSJed Brown } 36330a96aa3bSJed Brown 36340a96aa3bSJed Brown for (j = 0; j < P4EST_CHILDREN; j++) { 36350a96aa3bSJed Brown PetscInt k; 36360a96aa3bSJed Brown PetscReal prod = 1.; 36370a96aa3bSJed Brown 36380a96aa3bSJed Brown for (k = 0; k < P4EST_DIM; k++) prod *= (j & (1 << k)) ? eta[k] : (1. - eta[k]); 36390a96aa3bSJed Brown for (k = 0; k < 3; k++) coordGuess[k] += prod * treeCoords[j][k]; 36400a96aa3bSJed Brown } 36410a96aa3bSJed Brown 36420a96aa3bSJed Brown for (j = 0; j < numRounds; j++) { 36430a96aa3bSJed Brown PetscInt dir; 36440a96aa3bSJed Brown 36450a96aa3bSJed Brown for (dir = 0; dir < P4EST_DIM; dir++) { 36460a96aa3bSJed Brown PetscInt k; 36470a96aa3bSJed Brown PetscReal diff[3]; 36480a96aa3bSJed Brown PetscReal dXdeta[3] = {0.}; 36490a96aa3bSJed Brown PetscReal rhs, scale, update; 36500a96aa3bSJed Brown 36510a96aa3bSJed Brown for (k = 0; k < 3; k++) diff[k] = coordP4est[k] - coordGuess[k]; 36520a96aa3bSJed Brown for (k = 0; k < P4EST_CHILDREN; k++) { 36530a96aa3bSJed Brown PetscInt l; 36540a96aa3bSJed Brown PetscReal prod = 1.; 36550a96aa3bSJed Brown 36560a96aa3bSJed Brown for (l = 0; l < P4EST_DIM; l++) { 36570a96aa3bSJed Brown if (l == dir) { 36580a96aa3bSJed Brown prod *= (k & (1 << l)) ? 1. : -1.; 36590a96aa3bSJed Brown } else { 36600a96aa3bSJed Brown prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]); 36610a96aa3bSJed Brown } 36620a96aa3bSJed Brown } 36630a96aa3bSJed Brown for (l = 0; l < 3; l++) dXdeta[l] += prod * treeCoords[k][l]; 36640a96aa3bSJed Brown } 36650a96aa3bSJed Brown rhs = 0.; 36660a96aa3bSJed Brown scale = 0; 36670a96aa3bSJed Brown for (k = 0; k < 3; k++) { 36680a96aa3bSJed Brown rhs += diff[k] * dXdeta[k]; 36690a96aa3bSJed Brown scale += dXdeta[k] * dXdeta[k]; 36700a96aa3bSJed Brown } 36710a96aa3bSJed Brown update = rhs / scale; 36720a96aa3bSJed Brown eta[dir] += update; 36730a96aa3bSJed Brown eta[dir] = PetscMin(eta[dir], 1.); 36740a96aa3bSJed Brown eta[dir] = PetscMax(eta[dir], 0.); 36750a96aa3bSJed Brown 36760a96aa3bSJed Brown coordGuess[0] = coordGuess[1] = coordGuess[2] = 0.; 36770a96aa3bSJed Brown for (k = 0; k < P4EST_CHILDREN; k++) { 36780a96aa3bSJed Brown PetscInt l; 36790a96aa3bSJed Brown PetscReal prod = 1.; 36800a96aa3bSJed Brown 36810a96aa3bSJed Brown for (l = 0; l < P4EST_DIM; l++) prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]); 36820a96aa3bSJed Brown for (l = 0; l < 3; l++) coordGuess[l] += prod * treeCoords[k][l]; 36830a96aa3bSJed Brown } 36840a96aa3bSJed Brown } 36850a96aa3bSJed Brown } 36860a96aa3bSJed Brown for (j = 0; j < 3; j++) coordP4est[j] = (double)eta[j]; 36870a96aa3bSJed Brown 36880a96aa3bSJed Brown if (geom) { 36890a96aa3bSJed Brown (geom->X)(geom, t, coordP4est, coordP4estMapped); 36900a96aa3bSJed Brown for (j = 0; j < coordDim; j++) coord[j] = (PetscScalar)coordP4estMapped[j]; 36910a96aa3bSJed Brown } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded"); 36920a96aa3bSJed Brown } 36930a96aa3bSJed Brown } 36940a96aa3bSJed Brown } 36959566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, cell, PETSC_TRUE, &closureSize, &closure)); 36963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36970a96aa3bSJed Brown } 36980a96aa3bSJed Brown 3699d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestMapCoordinates(DM dm, DM plex) 3700d71ae5a4SJacob Faibussowitsch { 37010a96aa3bSJed Brown DM_Forest *forest; 37020a96aa3bSJed Brown DM_Forest_pforest *pforest; 37030a96aa3bSJed Brown p4est_geometry_t *geom; 37040a96aa3bSJed Brown PetscInt cLocalStart, cLocalEnd; 37050a96aa3bSJed Brown Vec coordLocalVec; 37060a96aa3bSJed Brown PetscScalar *coords; 37070a96aa3bSJed Brown p4est_topidx_t flt, llt, t; 37080a96aa3bSJed Brown p4est_tree_t *trees; 37090a96aa3bSJed Brown PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *); 37100a96aa3bSJed Brown void *mapCtx; 37110a96aa3bSJed Brown 37120a96aa3bSJed Brown PetscFunctionBegin; 37130a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 37140a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 37150a96aa3bSJed Brown geom = pforest->topo->geom; 37169566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseCoordinateMapping(dm, &map, &mapCtx)); 37173ba16761SJacob Faibussowitsch if (!geom && !map) PetscFunctionReturn(PETSC_SUCCESS); 37189566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(plex, &coordLocalVec)); 37199566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordLocalVec, &coords)); 37200a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 37210a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 37220a96aa3bSJed Brown flt = pforest->forest->first_local_tree; 37230a96aa3bSJed Brown llt = pforest->forest->last_local_tree; 37240a96aa3bSJed Brown trees = (p4est_tree_t *)pforest->forest->trees->array; 37250a96aa3bSJed Brown if (map) { /* apply the map directly to the existing coordinates */ 37260a96aa3bSJed Brown PetscSection coordSec; 37270a96aa3bSJed Brown PetscInt coordStart, coordEnd, p, coordDim, p4estCoordDim, cStart, cEnd, cEndInterior; 37280a96aa3bSJed Brown DM base; 37290a96aa3bSJed Brown 37309566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd)); 37312827ebadSStefano Zampini PetscCall(DMPlexGetCellTypeStratum(plex, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL)); 37320a96aa3bSJed Brown cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 37339566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 37349566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(plex, &coordSec)); 37359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSec, &coordStart, &coordEnd)); 37369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(plex, &coordDim)); 37370a96aa3bSJed Brown p4estCoordDim = PetscMin(coordDim, 3); 37380a96aa3bSJed Brown for (p = coordStart; p < coordEnd; p++) { 37390a96aa3bSJed Brown PetscInt *star = NULL, starSize; 37400a96aa3bSJed Brown PetscInt dof, off, cell = -1, coarsePoint = -1; 37410a96aa3bSJed Brown PetscInt nCoords, i; 37429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSec, p, &dof)); 374308401ef6SPierre Jolivet PetscCheck(dof % coordDim == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Did not understand coordinate layout"); 37440a96aa3bSJed Brown nCoords = dof / coordDim; 37459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSec, p, &off)); 37469566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, p, PETSC_FALSE, &starSize, &star)); 37470a96aa3bSJed Brown for (i = 0; i < starSize; i++) { 37480a96aa3bSJed Brown PetscInt point = star[2 * i]; 37490a96aa3bSJed Brown 37500a96aa3bSJed Brown if (cStart <= point && point < cEnd) { 37510a96aa3bSJed Brown cell = point; 37520a96aa3bSJed Brown break; 37530a96aa3bSJed Brown } 37540a96aa3bSJed Brown } 37559566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, p, PETSC_FALSE, &starSize, &star)); 37560a96aa3bSJed Brown if (cell >= 0) { 37570a96aa3bSJed Brown if (cell < cLocalStart) { 37580a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 37590a96aa3bSJed Brown 37600a96aa3bSJed Brown coarsePoint = ghosts[cell].p.which_tree; 37610a96aa3bSJed Brown } else if (cell < cLocalEnd) { 37620a96aa3bSJed Brown cell -= cLocalStart; 37630a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 3764f4f49eeaSPierre Jolivet p4est_tree_t *tree = &trees[t]; 37650a96aa3bSJed Brown 37660a96aa3bSJed Brown if (cell >= tree->quadrants_offset && (size_t)cell < tree->quadrants_offset + tree->quadrants.elem_count) { 37670a96aa3bSJed Brown coarsePoint = t; 37680a96aa3bSJed Brown break; 37690a96aa3bSJed Brown } 37700a96aa3bSJed Brown } 37710a96aa3bSJed Brown } else { 37720a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 37730a96aa3bSJed Brown 37740a96aa3bSJed Brown coarsePoint = ghosts[cell - cLocalEnd].p.which_tree; 37750a96aa3bSJed Brown } 37760a96aa3bSJed Brown } 37770a96aa3bSJed Brown for (i = 0; i < nCoords; i++) { 37780a96aa3bSJed Brown PetscScalar *coord = &coords[off + i * coordDim]; 37790a96aa3bSJed Brown PetscReal coordP4est[3] = {0.}; 37800a96aa3bSJed Brown PetscReal coordP4estMapped[3] = {0.}; 37810a96aa3bSJed Brown PetscInt j; 37820a96aa3bSJed Brown 37830a96aa3bSJed Brown for (j = 0; j < p4estCoordDim; j++) coordP4est[j] = PetscRealPart(coord[j]); 37849566063dSJacob Faibussowitsch PetscCall((map)(base, coarsePoint, p4estCoordDim, coordP4est, coordP4estMapped, mapCtx)); 37850a96aa3bSJed Brown for (j = 0; j < p4estCoordDim; j++) coord[j] = (PetscScalar)coordP4estMapped[j]; 37860a96aa3bSJed Brown } 37870a96aa3bSJed Brown } 37880a96aa3bSJed Brown } else { /* we have to transform coordinates back to the unit cube (where geom is defined), and then apply geom */ 37890a96aa3bSJed Brown PetscInt cStart, cEnd, cEndInterior; 37900a96aa3bSJed Brown 37919566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd)); 37922827ebadSStefano Zampini PetscCall(DMPlexGetCellTypeStratum(plex, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL)); 37930a96aa3bSJed Brown cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 37940a96aa3bSJed Brown if (cLocalStart > 0) { 37950a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 37960a96aa3bSJed Brown PetscInt count; 37970a96aa3bSJed Brown 37980a96aa3bSJed Brown for (count = 0; count < cLocalStart; count++) { 37990a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count]; 38000a96aa3bSJed Brown p4est_topidx_t t = quad->p.which_tree; 38010a96aa3bSJed Brown 38029566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates_Cell(plex, geom, count, quad, t, pforest->topo->conn, coords)); 38030a96aa3bSJed Brown } 38040a96aa3bSJed Brown } 38050a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 3806f4f49eeaSPierre Jolivet p4est_tree_t *tree = &trees[t]; 38070a96aa3bSJed Brown PetscInt offset = cLocalStart + tree->quadrants_offset, i; 38080a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 38090a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 38100a96aa3bSJed Brown 38110a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 38120a96aa3bSJed Brown PetscInt count = i + offset; 38130a96aa3bSJed Brown 38149566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates_Cell(plex, geom, count, &quads[i], t, pforest->topo->conn, coords)); 38150a96aa3bSJed Brown } 38160a96aa3bSJed Brown } 38170a96aa3bSJed Brown if (cLocalEnd - cLocalStart < cEnd - cStart) { 38180a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 38190a96aa3bSJed Brown PetscInt numGhosts = (PetscInt)pforest->ghost->ghosts.elem_count; 38200a96aa3bSJed Brown PetscInt count; 38210a96aa3bSJed Brown 38220a96aa3bSJed Brown for (count = 0; count < numGhosts - cLocalStart; count++) { 38230a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count + cLocalStart]; 38240a96aa3bSJed Brown p4est_topidx_t t = quad->p.which_tree; 38250a96aa3bSJed Brown 38269566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates_Cell(plex, geom, count + cLocalEnd, quad, t, pforest->topo->conn, coords)); 38270a96aa3bSJed Brown } 38280a96aa3bSJed Brown } 38290a96aa3bSJed Brown } 38309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordLocalVec, &coords)); 38313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38320a96aa3bSJed Brown } 38330a96aa3bSJed Brown 3834d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestQuadrantIsInterior(p4est_quadrant_t *quad, PetscBool *is_interior) 3835d71ae5a4SJacob Faibussowitsch { 3836852b71a7SToby Isaac PetscFunctionBegin; 3837852b71a7SToby Isaac p4est_qcoord_t h = P4EST_QUADRANT_LEN(quad->level); 3838852b71a7SToby Isaac if ((quad->x > 0) && (quad->x + h < P4EST_ROOT_LEN) 3839852b71a7SToby Isaac #ifdef P4_TO_P8 3840852b71a7SToby Isaac && (quad->z > 0) && (quad->z + h < P4EST_ROOT_LEN) 3841852b71a7SToby Isaac #endif 3842852b71a7SToby Isaac && (quad->y > 0) && (quad->y + h < P4EST_ROOT_LEN)) { 3843852b71a7SToby Isaac *is_interior = PETSC_TRUE; 3844852b71a7SToby Isaac } else { 3845852b71a7SToby Isaac *is_interior = PETSC_FALSE; 3846852b71a7SToby Isaac } 38473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3848852b71a7SToby Isaac } 3849852b71a7SToby Isaac 3850852b71a7SToby Isaac /* We always use DG coordinates with p4est: if they do not match the vertex 3851852b71a7SToby Isaac coordinates, add space for them in the section */ 3852d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestCheckLocalizeCell(DM plex, PetscInt cDim, Vec cVecOld, DM_Forest_pforest *pforest, PetscSection oldSection, PetscSection newSection, PetscInt cell, PetscInt coarsePoint, p4est_quadrant_t *quad) 3853d71ae5a4SJacob Faibussowitsch { 3854852b71a7SToby Isaac PetscBool is_interior; 3855852b71a7SToby Isaac 3856852b71a7SToby Isaac PetscFunctionBegin; 3857852b71a7SToby Isaac PetscCall(PforestQuadrantIsInterior(quad, &is_interior)); 3858852b71a7SToby Isaac if (is_interior) { // quads in the interior of a coarse cell can't touch periodic interfaces 3859852b71a7SToby Isaac PetscCall(PetscSectionSetDof(newSection, cell, 0)); 3860852b71a7SToby Isaac PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, 0)); 3861852b71a7SToby Isaac } else { 3862852b71a7SToby Isaac PetscInt cSize; 3863852b71a7SToby Isaac PetscScalar *values = NULL; 3864852b71a7SToby Isaac PetscBool same_coords = PETSC_TRUE; 3865852b71a7SToby Isaac 3866852b71a7SToby Isaac PetscCall(DMPlexVecGetClosure(plex, oldSection, cVecOld, cell, &cSize, &values)); 3867852b71a7SToby Isaac PetscAssert(cSize == cDim * P4EST_CHILDREN, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected closure size"); 3868852b71a7SToby Isaac for (int c = 0; c < P4EST_CHILDREN; c++) { 3869852b71a7SToby Isaac p4est_qcoord_t quad_coords[3]; 3870852b71a7SToby Isaac p4est_qcoord_t h = P4EST_QUADRANT_LEN(quad->level); 3871852b71a7SToby Isaac double corner_coords[3]; 3872852b71a7SToby Isaac double vert_coords[3]; 3873852b71a7SToby Isaac PetscInt corner = PetscVertToP4estVert[c]; 3874852b71a7SToby Isaac 3875ad540459SPierre Jolivet for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) vert_coords[d] = PetscRealPart(values[c * cDim + d]); 3876852b71a7SToby Isaac 3877852b71a7SToby Isaac quad_coords[0] = quad->x; 3878852b71a7SToby Isaac quad_coords[1] = quad->y; 3879852b71a7SToby Isaac #ifdef P4_TO_P8 3880852b71a7SToby Isaac quad_coords[2] = quad->z; 3881852b71a7SToby Isaac #endif 3882ad540459SPierre Jolivet for (int d = 0; d < 3; d++) quad_coords[d] += (corner & (1 << d)) ? h : 0; 3883852b71a7SToby Isaac #ifndef P4_TO_P8 3884648bc8c4SBarry Smith PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], corner_coords)); 3885852b71a7SToby Isaac #else 3886648bc8c4SBarry Smith PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], quad_coords[2], corner_coords)); 3887852b71a7SToby Isaac #endif 3888852b71a7SToby Isaac for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) { 3889852b71a7SToby Isaac if (fabs(vert_coords[d] - corner_coords[d]) > PETSC_SMALL) { 3890852b71a7SToby Isaac same_coords = PETSC_FALSE; 3891852b71a7SToby Isaac break; 3892852b71a7SToby Isaac } 3893852b71a7SToby Isaac } 3894852b71a7SToby Isaac } 3895852b71a7SToby Isaac if (same_coords) { 3896852b71a7SToby Isaac PetscCall(PetscSectionSetDof(newSection, cell, 0)); 3897852b71a7SToby Isaac PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, 0)); 3898852b71a7SToby Isaac } else { 3899852b71a7SToby Isaac PetscCall(PetscSectionSetDof(newSection, cell, cSize)); 3900852b71a7SToby Isaac PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, cSize)); 3901852b71a7SToby Isaac } 3902852b71a7SToby Isaac PetscCall(DMPlexVecRestoreClosure(plex, oldSection, cVecOld, cell, &cSize, &values)); 3903852b71a7SToby Isaac } 39043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3905852b71a7SToby Isaac } 3906852b71a7SToby Isaac 3907d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestLocalizeCell(DM plex, PetscInt cDim, DM_Forest_pforest *pforest, PetscSection newSection, PetscInt cell, PetscInt coarsePoint, p4est_quadrant_t *quad, PetscScalar coords[]) 3908d71ae5a4SJacob Faibussowitsch { 3909852b71a7SToby Isaac PetscInt cdof, off; 3910852b71a7SToby Isaac 3911852b71a7SToby Isaac PetscFunctionBegin; 3912852b71a7SToby Isaac PetscCall(PetscSectionGetDof(newSection, cell, &cdof)); 39133ba16761SJacob Faibussowitsch if (!cdof) PetscFunctionReturn(PETSC_SUCCESS); 3914852b71a7SToby Isaac 3915852b71a7SToby Isaac PetscCall(PetscSectionGetOffset(newSection, cell, &off)); 3916852b71a7SToby Isaac for (PetscInt c = 0, pos = off; c < P4EST_CHILDREN; c++) { 3917852b71a7SToby Isaac p4est_qcoord_t quad_coords[3]; 3918852b71a7SToby Isaac p4est_qcoord_t h = P4EST_QUADRANT_LEN(quad->level); 3919852b71a7SToby Isaac double corner_coords[3]; 3920852b71a7SToby Isaac PetscInt corner = PetscVertToP4estVert[c]; 3921852b71a7SToby Isaac 3922852b71a7SToby Isaac quad_coords[0] = quad->x; 3923852b71a7SToby Isaac quad_coords[1] = quad->y; 3924852b71a7SToby Isaac #ifdef P4_TO_P8 3925852b71a7SToby Isaac quad_coords[2] = quad->z; 3926852b71a7SToby Isaac #endif 3927ad540459SPierre Jolivet for (int d = 0; d < 3; d++) quad_coords[d] += (corner & (1 << d)) ? h : 0; 3928852b71a7SToby Isaac #ifndef P4_TO_P8 3929648bc8c4SBarry Smith PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], corner_coords)); 3930852b71a7SToby Isaac #else 3931648bc8c4SBarry Smith PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], quad_coords[2], corner_coords)); 3932852b71a7SToby Isaac #endif 3933ad540459SPierre Jolivet for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) coords[pos++] = corner_coords[d]; 3934ad540459SPierre Jolivet for (PetscInt d = PetscMin(cDim, 3); d < cDim; d++) coords[pos++] = 0.; 3935852b71a7SToby Isaac } 39363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3937852b71a7SToby Isaac } 3938852b71a7SToby Isaac 3939d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestLocalizeCoordinates(DM dm, DM plex) 3940d71ae5a4SJacob Faibussowitsch { 39410a96aa3bSJed Brown DM_Forest *forest; 39420a96aa3bSJed Brown DM_Forest_pforest *pforest; 39436858538eSMatthew G. Knepley DM base, cdm, cdmCell; 3944852b71a7SToby Isaac Vec cVec, cVecOld; 3945852b71a7SToby Isaac PetscSection oldSection, newSection; 39460a96aa3bSJed Brown PetscScalar *coords2; 39476858538eSMatthew G. Knepley const PetscReal *L; 39480a96aa3bSJed Brown PetscInt cLocalStart, cLocalEnd, coarsePoint; 3949852b71a7SToby Isaac PetscInt cDim, newStart, newEnd; 3950852b71a7SToby Isaac PetscInt v, vStart, vEnd, cp, cStart, cEnd, cEndInterior; 39510a96aa3bSJed Brown p4est_topidx_t flt, llt, t; 39520a96aa3bSJed Brown p4est_tree_t *trees; 39536858538eSMatthew G. Knepley PetscBool baseLocalized = PETSC_FALSE; 39540a96aa3bSJed Brown 39550a96aa3bSJed Brown PetscFunctionBegin; 39564fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, NULL, NULL, &L)); 39570a96aa3bSJed Brown /* we localize on all cells if we don't have a base DM or the base DM coordinates have not been localized */ 39589566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cDim)); 39599566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 39606858538eSMatthew G. Knepley if (base) PetscCall(DMGetCoordinatesLocalized(base, &baseLocalized)); 39610a96aa3bSJed Brown if (!baseLocalized) base = NULL; 39623ba16761SJacob Faibussowitsch if (!baseLocalized && !L) PetscFunctionReturn(PETSC_SUCCESS); 39639566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &newStart, &newEnd)); 39640a96aa3bSJed Brown 39659566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newSection)); 39669566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newSection, 1)); 39679566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newSection, 0, cDim)); 39689566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newSection, newStart, newEnd)); 39690a96aa3bSJed Brown 39709566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(plex, &oldSection)); 39719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(plex, 0, &vStart, &vEnd)); 3972852b71a7SToby Isaac PetscCall(DMGetCoordinatesLocal(plex, &cVecOld)); 39730a96aa3bSJed Brown 39740a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 39750a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 39760a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 39770a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 39780a96aa3bSJed Brown flt = pforest->forest->first_local_tree; 39790a96aa3bSJed Brown llt = pforest->forest->last_local_tree; 39800a96aa3bSJed Brown trees = (p4est_tree_t *)pforest->forest->trees->array; 39810a96aa3bSJed Brown 39829566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd)); 39832827ebadSStefano Zampini PetscCall(DMPlexGetCellTypeStratum(plex, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL)); 39840a96aa3bSJed Brown cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 3985852b71a7SToby Isaac cp = 0; 39860a96aa3bSJed Brown if (cLocalStart > 0) { 39870a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 3988852b71a7SToby Isaac PetscInt cell; 39890a96aa3bSJed Brown 3990852b71a7SToby Isaac for (cell = 0; cell < cLocalStart; ++cell, cp++) { 3991852b71a7SToby Isaac p4est_quadrant_t *quad = &ghosts[cell]; 3992852b71a7SToby Isaac 39930a96aa3bSJed Brown coarsePoint = quad->p.which_tree; 3994852b71a7SToby Isaac PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad)); 39950a96aa3bSJed Brown } 39960a96aa3bSJed Brown } 39970a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 3998f4f49eeaSPierre Jolivet p4est_tree_t *tree = &trees[t]; 39990a96aa3bSJed Brown PetscInt offset = cLocalStart + tree->quadrants_offset; 40000a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 4001852b71a7SToby Isaac p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 40020a96aa3bSJed Brown PetscInt i; 40030a96aa3bSJed Brown 40040a96aa3bSJed Brown if (!numQuads) continue; 40050a96aa3bSJed Brown coarsePoint = t; 4006852b71a7SToby Isaac for (i = 0; i < numQuads; i++, cp++) { 4007852b71a7SToby Isaac PetscInt cell = i + offset; 4008852b71a7SToby Isaac p4est_quadrant_t *quad = &quads[i]; 40090a96aa3bSJed Brown 4010852b71a7SToby Isaac PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad)); 40110a96aa3bSJed Brown } 40120a96aa3bSJed Brown } 40130a96aa3bSJed Brown if (cLocalEnd - cLocalStart < cEnd - cStart) { 40140a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 40150a96aa3bSJed Brown PetscInt numGhosts = (PetscInt)pforest->ghost->ghosts.elem_count; 40160a96aa3bSJed Brown PetscInt count; 40170a96aa3bSJed Brown 4018852b71a7SToby Isaac for (count = 0; count < numGhosts - cLocalStart; count++, cp++) { 40190a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count + cLocalStart]; 40200a96aa3bSJed Brown coarsePoint = quad->p.which_tree; 4021852b71a7SToby Isaac PetscInt cell = count + cLocalEnd; 40220a96aa3bSJed Brown 4023852b71a7SToby Isaac PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad)); 40240a96aa3bSJed Brown } 40250a96aa3bSJed Brown } 4026852b71a7SToby Isaac PetscAssert(cp == cEnd - cStart, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected number of fine cells %" PetscInt_FMT " != %" PetscInt_FMT, cp, cEnd - cStart); 40270a96aa3bSJed Brown 40289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newSection)); 40296858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(plex, &cdm)); 40306858538eSMatthew G. Knepley PetscCall(DMClone(cdm, &cdmCell)); 40316858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateDM(plex, cdmCell)); 40326858538eSMatthew G. Knepley PetscCall(DMDestroy(&cdmCell)); 40336858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateSection(plex, cDim, newSection)); 40349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &v)); 40359566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &cVec)); 40369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)cVec, "coordinates")); 40379566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(cVec, cDim)); 40389566063dSJacob Faibussowitsch PetscCall(VecSetSizes(cVec, v, PETSC_DETERMINE)); 40399566063dSJacob Faibussowitsch PetscCall(VecSetType(cVec, VECSTANDARD)); 40409566063dSJacob Faibussowitsch PetscCall(VecSet(cVec, PETSC_MIN_REAL)); 40410a96aa3bSJed Brown 40420a96aa3bSJed Brown /* Localize coordinates on cells if needed */ 40436858538eSMatthew G. Knepley PetscCall(VecGetArray(cVec, &coords2)); 4044852b71a7SToby Isaac cp = 0; 4045852b71a7SToby Isaac if (cLocalStart > 0) { 4046852b71a7SToby Isaac p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 4047852b71a7SToby Isaac PetscInt cell; 4048852b71a7SToby Isaac 4049852b71a7SToby Isaac for (cell = 0; cell < cLocalStart; ++cell, cp++) { 4050852b71a7SToby Isaac p4est_quadrant_t *quad = &ghosts[cell]; 4051852b71a7SToby Isaac 4052852b71a7SToby Isaac coarsePoint = quad->p.which_tree; 4053852b71a7SToby Isaac PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2)); 4054852b71a7SToby Isaac } 4055852b71a7SToby Isaac } 40560a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 4057f4f49eeaSPierre Jolivet p4est_tree_t *tree = &trees[t]; 40580a96aa3bSJed Brown PetscInt offset = cLocalStart + tree->quadrants_offset; 40590a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 4060852b71a7SToby Isaac p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 4061852b71a7SToby Isaac PetscInt i; 40620a96aa3bSJed Brown 40630a96aa3bSJed Brown if (!numQuads) continue; 4064852b71a7SToby Isaac coarsePoint = t; 4065852b71a7SToby Isaac for (i = 0; i < numQuads; i++, cp++) { 4066852b71a7SToby Isaac PetscInt cell = i + offset; 40670a96aa3bSJed Brown p4est_quadrant_t *quad = &quads[i]; 40680a96aa3bSJed Brown 4069852b71a7SToby Isaac PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2)); 4070852b71a7SToby Isaac } 4071852b71a7SToby Isaac } 4072852b71a7SToby Isaac if (cLocalEnd - cLocalStart < cEnd - cStart) { 4073852b71a7SToby Isaac p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 4074852b71a7SToby Isaac PetscInt numGhosts = (PetscInt)pforest->ghost->ghosts.elem_count; 4075852b71a7SToby Isaac PetscInt count; 40760a96aa3bSJed Brown 4077852b71a7SToby Isaac for (count = 0; count < numGhosts - cLocalStart; count++, cp++) { 4078852b71a7SToby Isaac p4est_quadrant_t *quad = &ghosts[count + cLocalStart]; 4079852b71a7SToby Isaac coarsePoint = quad->p.which_tree; 4080852b71a7SToby Isaac PetscInt cell = count + cLocalEnd; 40810a96aa3bSJed Brown 4082852b71a7SToby Isaac PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2)); 40830a96aa3bSJed Brown } 40840a96aa3bSJed Brown } 40859566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cVec, &coords2)); 40866858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(plex, cVec)); 40879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 40889566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 40893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 40900a96aa3bSJed Brown } 40910a96aa3bSJed Brown 40920a96aa3bSJed Brown #define DMForestClearAdaptivityForest_pforest _append_pforest(DMForestClearAdaptivityForest) 4093d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestClearAdaptivityForest_pforest(DM dm) 4094d71ae5a4SJacob Faibussowitsch { 40950a96aa3bSJed Brown DM_Forest *forest; 40960a96aa3bSJed Brown DM_Forest_pforest *pforest; 40970a96aa3bSJed Brown 40980a96aa3bSJed Brown PetscFunctionBegin; 40990a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 41000a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 4101f4f49eeaSPierre Jolivet PetscCall(PetscSFDestroy(&pforest->pointAdaptToSelfSF)); 4102f4f49eeaSPierre Jolivet PetscCall(PetscSFDestroy(&pforest->pointSelfToAdaptSF)); 41039566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointAdaptToSelfCids)); 41049566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointSelfToAdaptCids)); 41053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41060a96aa3bSJed Brown } 41070a96aa3bSJed Brown 4108d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvert_pforest_plex(DM dm, DMType newtype, DM *plex) 4109d71ae5a4SJacob Faibussowitsch { 41100a96aa3bSJed Brown DM_Forest *forest; 41110a96aa3bSJed Brown DM_Forest_pforest *pforest; 41120a96aa3bSJed Brown DM refTree, newPlex, base; 41130a96aa3bSJed Brown PetscInt adjDim, adjCodim, coordDim; 41140a96aa3bSJed Brown MPI_Comm comm; 41150a96aa3bSJed Brown PetscBool isPforest; 41160a96aa3bSJed Brown PetscInt dim; 41170a96aa3bSJed Brown PetscInt overlap; 41180a96aa3bSJed Brown p4est_connect_type_t ctype; 41190a96aa3bSJed Brown p4est_locidx_t first_local_quad = -1; 41200a96aa3bSJed Brown sc_array_t *points_per_dim, *cone_sizes, *cones, *cone_orientations, *coords, *children, *parents, *childids, *leaves, *remotes; 41210a96aa3bSJed Brown PetscSection parentSection; 41220a96aa3bSJed Brown PetscSF pointSF; 41230a96aa3bSJed Brown size_t zz, count; 41240a96aa3bSJed Brown PetscInt pStart, pEnd; 41250a96aa3bSJed Brown DMLabel ghostLabelBase = NULL; 41260a96aa3bSJed Brown 41270a96aa3bSJed Brown PetscFunctionBegin; 41280a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 41290a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)dm); 41309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPFOREST, &isPforest)); 413128b400f6SJacob Faibussowitsch PetscCheck(isPforest, comm, PETSC_ERR_ARG_WRONG, "Expected DM type %s, got %s", DMPFOREST, ((PetscObject)dm)->type_name); 4132671c294aSToby Isaac PetscCall(DMSetUp(dm)); 41339566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 413463a3b9bcSJacob Faibussowitsch PetscCheck(dim == P4EST_DIM, comm, PETSC_ERR_ARG_WRONG, "Expected DM dimension %d, got %" PetscInt_FMT, P4EST_DIM, dim); 41350a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 41360a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 41379566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 413848a46eb9SPierre Jolivet if (base) PetscCall(DMGetLabel(base, "ghost", &ghostLabelBase)); 41390a96aa3bSJed Brown if (!pforest->plex) { 41400a96aa3bSJed Brown PetscMPIInt size; 4141c7d28b7cSMatthew G. Knepley const char *name; 41420a96aa3bSJed Brown 41439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 41449566063dSJacob Faibussowitsch PetscCall(DMCreate(comm, &newPlex)); 4145c7d28b7cSMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject)dm, &name)); 4146c7d28b7cSMatthew G. Knepley PetscCall(PetscObjectSetName((PetscObject)newPlex, name)); 41479566063dSJacob Faibussowitsch PetscCall(DMSetType(newPlex, DMPLEX)); 41489566063dSJacob Faibussowitsch PetscCall(DMSetMatType(newPlex, dm->mattype)); 41490a96aa3bSJed Brown /* share labels */ 41509566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, newPlex, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 41519566063dSJacob Faibussowitsch PetscCall(DMForestGetAdjacencyDimension(dm, &adjDim)); 41529566063dSJacob Faibussowitsch PetscCall(DMForestGetAdjacencyCodimension(dm, &adjCodim)); 41539566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 41540a96aa3bSJed Brown if (adjDim == 0) { 41550a96aa3bSJed Brown ctype = P4EST_CONNECT_FULL; 41560a96aa3bSJed Brown } else if (adjCodim == 1) { 41570a96aa3bSJed Brown ctype = P4EST_CONNECT_FACE; 41580a96aa3bSJed Brown #if defined(P4_TO_P8) 41590a96aa3bSJed Brown } else if (adjDim == 1) { 41600a96aa3bSJed Brown ctype = P8EST_CONNECT_EDGE; 41610a96aa3bSJed Brown #endif 41620a96aa3bSJed Brown } else { 416363a3b9bcSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid adjacency dimension %" PetscInt_FMT, adjDim); 41640a96aa3bSJed Brown } 416563a3b9bcSJacob Faibussowitsch PetscCheck(ctype == P4EST_CONNECT_FULL, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Adjacency dimension %" PetscInt_FMT " / codimension %" PetscInt_FMT " not supported yet", adjDim, adjCodim); 41669566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm, &overlap)); 416760667520SVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(newPlex, NULL, overlap)); 41680a96aa3bSJed Brown 41690a96aa3bSJed Brown points_per_dim = sc_array_new(sizeof(p4est_locidx_t)); 41700a96aa3bSJed Brown cone_sizes = sc_array_new(sizeof(p4est_locidx_t)); 41710a96aa3bSJed Brown cones = sc_array_new(sizeof(p4est_locidx_t)); 41720a96aa3bSJed Brown cone_orientations = sc_array_new(sizeof(p4est_locidx_t)); 41730a96aa3bSJed Brown coords = sc_array_new(3 * sizeof(double)); 41740a96aa3bSJed Brown children = sc_array_new(sizeof(p4est_locidx_t)); 41750a96aa3bSJed Brown parents = sc_array_new(sizeof(p4est_locidx_t)); 41760a96aa3bSJed Brown childids = sc_array_new(sizeof(p4est_locidx_t)); 41770a96aa3bSJed Brown leaves = sc_array_new(sizeof(p4est_locidx_t)); 41780a96aa3bSJed Brown remotes = sc_array_new(2 * sizeof(p4est_locidx_t)); 41790a96aa3bSJed Brown 4180792fecdfSBarry Smith PetscCallP4est(p4est_get_plex_data_ext, (pforest->forest, &pforest->ghost, &pforest->lnodes, ctype, (int)((size > 1) ? overlap : 0), &first_local_quad, points_per_dim, cone_sizes, cones, cone_orientations, coords, children, parents, childids, leaves, remotes, 1)); 41810a96aa3bSJed Brown 41820a96aa3bSJed Brown pforest->cLocalStart = (PetscInt)first_local_quad; 41830a96aa3bSJed Brown pforest->cLocalEnd = pforest->cLocalStart + (PetscInt)pforest->forest->local_num_quadrants; 41849566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(points_per_dim)); 41859566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_sizes)); 41869566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cones)); 41879566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_orientations)); 41889566063dSJacob Faibussowitsch PetscCall(coords_double_to_PetscScalar(coords, coordDim)); 41899566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(children)); 41909566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(parents)); 41919566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(childids)); 41929566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(leaves)); 41939566063dSJacob Faibussowitsch PetscCall(locidx_pair_to_PetscSFNode(remotes)); 41940a96aa3bSJed Brown 41959566063dSJacob Faibussowitsch PetscCall(DMSetDimension(newPlex, P4EST_DIM)); 41969566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(newPlex, coordDim)); 41979566063dSJacob Faibussowitsch PetscCall(DMPlexSetMaxProjectionHeight(newPlex, P4EST_DIM - 1)); 41989566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromDAG(newPlex, P4EST_DIM, (PetscInt *)points_per_dim->array, (PetscInt *)cone_sizes->array, (PetscInt *)cones->array, (PetscInt *)cone_orientations->array, (PetscScalar *)coords->array)); 41999566063dSJacob Faibussowitsch PetscCall(DMPlexConvertOldOrientations_Internal(newPlex)); 42009566063dSJacob Faibussowitsch PetscCall(DMCreateReferenceTree_pforest(comm, &refTree)); 42019566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(newPlex, refTree)); 42029566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &parentSection)); 42039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(newPlex, &pStart, &pEnd)); 42049566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(parentSection, pStart, pEnd)); 42050a96aa3bSJed Brown count = children->elem_count; 42060a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 42070a96aa3bSJed Brown PetscInt child = *((PetscInt *)sc_array_index(children, zz)); 42080a96aa3bSJed Brown 42099566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(parentSection, child, 1)); 42100a96aa3bSJed Brown } 42119566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(parentSection)); 42129566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(newPlex, parentSection, (PetscInt *)parents->array, (PetscInt *)childids->array)); 42139566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&parentSection)); 42149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &pointSF)); 42150a96aa3bSJed Brown /* 42160a96aa3bSJed Brown These arrays defining the sf are from the p4est library, but the code there shows the leaves being populated in increasing order. 42170a96aa3bSJed Brown https://gitlab.com/petsc/petsc/merge_requests/2248#note_240186391 42180a96aa3bSJed Brown */ 42199566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(pointSF, pEnd - pStart, (PetscInt)leaves->elem_count, (PetscInt *)leaves->array, PETSC_COPY_VALUES, (PetscSFNode *)remotes->array, PETSC_COPY_VALUES)); 42209566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(newPlex, pointSF)); 42219566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(dm, pointSF)); 42220a96aa3bSJed Brown { 42230a96aa3bSJed Brown DM coordDM; 42240a96aa3bSJed Brown 42259566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(newPlex, &coordDM)); 42269566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(coordDM, pointSF)); 42270a96aa3bSJed Brown } 42289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pointSF)); 42290a96aa3bSJed Brown sc_array_destroy(points_per_dim); 42300a96aa3bSJed Brown sc_array_destroy(cone_sizes); 42310a96aa3bSJed Brown sc_array_destroy(cones); 42320a96aa3bSJed Brown sc_array_destroy(cone_orientations); 42330a96aa3bSJed Brown sc_array_destroy(coords); 42340a96aa3bSJed Brown sc_array_destroy(children); 42350a96aa3bSJed Brown sc_array_destroy(parents); 42360a96aa3bSJed Brown sc_array_destroy(childids); 42370a96aa3bSJed Brown sc_array_destroy(leaves); 42380a96aa3bSJed Brown sc_array_destroy(remotes); 42390a96aa3bSJed Brown 42400a96aa3bSJed Brown { 42414fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 42420a96aa3bSJed Brown 42434fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 42444fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(newPlex, maxCell, Lstart, L)); 42459566063dSJacob Faibussowitsch PetscCall(DMPforestLocalizeCoordinates(dm, newPlex)); 42460a96aa3bSJed Brown } 42470a96aa3bSJed Brown 42480a96aa3bSJed Brown if (overlap > 0) { /* the p4est routine can't set all of the coordinates in its routine if there is overlap */ 42490a96aa3bSJed Brown Vec coordsGlobal, coordsLocal; 42500a96aa3bSJed Brown const PetscScalar *globalArray; 42510a96aa3bSJed Brown PetscScalar *localArray; 42520a96aa3bSJed Brown PetscSF coordSF; 42530a96aa3bSJed Brown DM coordDM; 42540a96aa3bSJed Brown 42559566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(newPlex, &coordDM)); 42569566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(coordDM, &coordSF)); 42579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(newPlex, &coordsGlobal)); 42589566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(newPlex, &coordsLocal)); 42599566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordsGlobal, &globalArray)); 42609566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordsLocal, &localArray)); 42619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coordSF, MPIU_SCALAR, globalArray, localArray, MPI_REPLACE)); 42629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coordSF, MPIU_SCALAR, globalArray, localArray, MPI_REPLACE)); 42639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordsLocal, &localArray)); 42649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordsGlobal, &globalArray)); 42659566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(newPlex, coordsLocal)); 42660a96aa3bSJed Brown } 42679566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates(dm, newPlex)); 42680a96aa3bSJed Brown 42690a96aa3bSJed Brown pforest->plex = newPlex; 42700a96aa3bSJed Brown 42710a96aa3bSJed Brown /* copy labels */ 42729566063dSJacob Faibussowitsch PetscCall(DMPforestLabelsFinalize(dm, newPlex)); 42730a96aa3bSJed Brown 42740a96aa3bSJed Brown if (ghostLabelBase || pforest->ghostName) { /* we have to do this after copying labels because the labels drive the construction of ghost cells */ 42750a96aa3bSJed Brown PetscInt numAdded; 42760a96aa3bSJed Brown DM newPlexGhosted; 42770a96aa3bSJed Brown void *ctx; 42780a96aa3bSJed Brown 42799566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells(newPlex, pforest->ghostName, &numAdded, &newPlexGhosted)); 42809566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(newPlex, &ctx)); 42819566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(newPlexGhosted, ctx)); 42820a96aa3bSJed Brown /* we want the sf for the ghost dm to be the one for the p4est dm as well */ 42839566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(newPlexGhosted, &pointSF)); 42849566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(dm, pointSF)); 42859566063dSJacob Faibussowitsch PetscCall(DMDestroy(&newPlex)); 42869566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(newPlexGhosted, refTree)); 42879566063dSJacob Faibussowitsch PetscCall(DMForestClearAdaptivityForest_pforest(dm)); 42880a96aa3bSJed Brown newPlex = newPlexGhosted; 42890a96aa3bSJed Brown 42900a96aa3bSJed Brown /* share the labels back */ 42919566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(dm)); 42929566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(newPlex, dm, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 42930a96aa3bSJed Brown pforest->plex = newPlex; 42940a96aa3bSJed Brown } 42959566063dSJacob Faibussowitsch PetscCall(DMDestroy(&refTree)); 42960a96aa3bSJed Brown if (dm->setfromoptionscalled) { 4297d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)newPlex); 4298dbbe0bcdSBarry Smith PetscCall(DMSetFromOptions_NonRefinement_Plex(newPlex, PetscOptionsObject)); 4299dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)newPlex, PetscOptionsObject)); 4300d0609cedSBarry Smith PetscOptionsEnd(); 43010a96aa3bSJed Brown } 43029566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(newPlex, NULL, "-dm_p4est_plex_view")); 43030a96aa3bSJed Brown { 43046858538eSMatthew G. Knepley DM cdm; 43050a96aa3bSJed Brown PetscSection coordsSec; 43060a96aa3bSJed Brown Vec coords; 43070a96aa3bSJed Brown PetscInt cDim; 43080a96aa3bSJed Brown 43099566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(newPlex, &cDim)); 43109566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(newPlex, &coordsSec)); 43119566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dm, cDim, coordsSec)); 43129566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(newPlex, &coords)); 43139566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dm, coords)); 4314707c51c7SToby Isaac PetscCall(DMGetCoordinateDM(newPlex, &cdm)); 4315707c51c7SToby Isaac if (cdm) { 4316707c51c7SToby Isaac PetscFE fe; 4317707c51c7SToby Isaac #if !defined(P4_TO_P8) 4318707c51c7SToby Isaac DMPolytopeType celltype = DM_POLYTOPE_QUADRILATERAL; 4319707c51c7SToby Isaac #else 4320707c51c7SToby Isaac DMPolytopeType celltype = DM_POLYTOPE_HEXAHEDRON; 4321707c51c7SToby Isaac #endif 4322707c51c7SToby Isaac 4323707c51c7SToby Isaac PetscCall(PetscFECreateLagrangeByCell(PETSC_COMM_SELF, dim, dim, celltype, 1, PETSC_DEFAULT, &fe)); 4324707c51c7SToby Isaac PetscCall(DMSetField(cdm, 0, NULL, (PetscObject)fe)); 4325707c51c7SToby Isaac PetscCall(PetscFEDestroy(&fe)); 4326707c51c7SToby Isaac PetscCall(DMCreateDS(cdm)); 4327707c51c7SToby Isaac } 43286858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(newPlex, &cdm)); 43296858538eSMatthew G. Knepley if (cdm) PetscCall(DMSetCellCoordinateDM(dm, cdm)); 43306858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateSection(newPlex, &coordsSec)); 43316858538eSMatthew G. Knepley if (coordsSec) PetscCall(DMSetCellCoordinateSection(dm, cDim, coordsSec)); 43326858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(newPlex, &coords)); 43336858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinatesLocal(dm, coords)); 43340a96aa3bSJed Brown } 4335cdf84abbSMatthew G. Knepley } else { 4336cdf84abbSMatthew G. Knepley PetscCall(DMCopyLabels(dm, pforest->plex, PETSC_OWN_POINTER, PETSC_FALSE, DM_COPY_LABELS_REPLACE)); 43370a96aa3bSJed Brown } 43380a96aa3bSJed Brown newPlex = pforest->plex; 43390a96aa3bSJed Brown if (plex) { 43409566063dSJacob Faibussowitsch PetscCall(DMClone(newPlex, plex)); 43416858538eSMatthew G. Knepley #if 0 43429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(newPlex,&coordDM)); 43439566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDM(*plex,coordDM)); 43446858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(newPlex,&coordDM)); 43456858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateDM(*plex,coordDM)); 43466858538eSMatthew G. Knepley #endif 43479566063dSJacob Faibussowitsch PetscCall(DMShareDiscretization(dm, *plex)); 43480a96aa3bSJed Brown } 43493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43500a96aa3bSJed Brown } 43510a96aa3bSJed Brown 4352d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetFromOptions_pforest(DM dm, PetscOptionItems *PetscOptionsObject) 4353d71ae5a4SJacob Faibussowitsch { 43540a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 43550a96aa3bSJed Brown char stringBuffer[256]; 43560a96aa3bSJed Brown PetscBool flg; 43570a96aa3bSJed Brown 43580a96aa3bSJed Brown PetscFunctionBegin; 4359dbbe0bcdSBarry Smith PetscCall(DMSetFromOptions_Forest(dm, PetscOptionsObject)); 4360d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "DM" P4EST_STRING " options"); 4361217f96c1SStefano Zampini PetscCall(PetscOptionsBool("-dm_p4est_partition_for_coarsening", "partition forest to allow for coarsening", "DMP4estSetPartitionForCoarsening", pforest->partition_for_coarsening, &pforest->partition_for_coarsening, NULL)); 43629566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-dm_p4est_ghost_label_name", "the name of the ghost label when converting from a DMPlex", NULL, NULL, stringBuffer, sizeof(stringBuffer), &flg)); 4363d0609cedSBarry Smith PetscOptionsHeadEnd(); 43640a96aa3bSJed Brown if (flg) { 43659566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->ghostName)); 43669566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(stringBuffer, &pforest->ghostName)); 43670a96aa3bSJed Brown } 43683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43690a96aa3bSJed Brown } 43700a96aa3bSJed Brown 43710a96aa3bSJed Brown #if !defined(P4_TO_P8) 43720a96aa3bSJed Brown #define DMPforestGetPartitionForCoarsening DMP4estGetPartitionForCoarsening 43730a96aa3bSJed Brown #define DMPforestSetPartitionForCoarsening DMP4estSetPartitionForCoarsening 43740a96aa3bSJed Brown #else 43750a96aa3bSJed Brown #define DMPforestGetPartitionForCoarsening DMP8estGetPartitionForCoarsening 43760a96aa3bSJed Brown #define DMPforestSetPartitionForCoarsening DMP8estSetPartitionForCoarsening 43770a96aa3bSJed Brown #endif 43780a96aa3bSJed Brown 4379d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMPforestGetPartitionForCoarsening(DM dm, PetscBool *flg) 4380d71ae5a4SJacob Faibussowitsch { 43810a96aa3bSJed Brown DM_Forest_pforest *pforest; 43820a96aa3bSJed Brown 43830a96aa3bSJed Brown PetscFunctionBegin; 43840a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43850a96aa3bSJed Brown pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 43860a96aa3bSJed Brown *flg = pforest->partition_for_coarsening; 43873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43880a96aa3bSJed Brown } 43890a96aa3bSJed Brown 4390d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMPforestSetPartitionForCoarsening(DM dm, PetscBool flg) 4391d71ae5a4SJacob Faibussowitsch { 43920a96aa3bSJed Brown DM_Forest_pforest *pforest; 43930a96aa3bSJed Brown 43940a96aa3bSJed Brown PetscFunctionBegin; 43950a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43960a96aa3bSJed Brown pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 43970a96aa3bSJed Brown pforest->partition_for_coarsening = flg; 43983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43990a96aa3bSJed Brown } 44000a96aa3bSJed Brown 4401d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetPlex(DM dm, DM *plex) 4402d71ae5a4SJacob Faibussowitsch { 44030a96aa3bSJed Brown DM_Forest_pforest *pforest; 44040a96aa3bSJed Brown 44050a96aa3bSJed Brown PetscFunctionBegin; 44060a96aa3bSJed Brown if (plex) *plex = NULL; 44079566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 44080a96aa3bSJed Brown pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 440948a46eb9SPierre Jolivet if (!pforest->plex) PetscCall(DMConvert_pforest_plex(dm, DMPLEX, NULL)); 44109566063dSJacob Faibussowitsch PetscCall(DMShareDiscretization(dm, pforest->plex)); 44110a96aa3bSJed Brown if (plex) *plex = pforest->plex; 44123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44130a96aa3bSJed Brown } 44140a96aa3bSJed Brown 44150a96aa3bSJed Brown #define DMCreateInterpolation_pforest _append_pforest(DMCreateInterpolation) 4416d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateInterpolation_pforest(DM dmCoarse, DM dmFine, Mat *interpolation, Vec *scaling) 4417d71ae5a4SJacob Faibussowitsch { 44180a96aa3bSJed Brown PetscSection gsc, gsf; 44190a96aa3bSJed Brown PetscInt m, n; 44200a96aa3bSJed Brown DM cdm; 44210a96aa3bSJed Brown 44220a96aa3bSJed Brown PetscFunctionBegin; 44239566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 44249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &m)); 44259566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 44269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &n)); 44270a96aa3bSJed Brown 44289566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)dmFine), interpolation)); 44299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*interpolation, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 44309566063dSJacob Faibussowitsch PetscCall(MatSetType(*interpolation, MATAIJ)); 44310a96aa3bSJed Brown 44329566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 443308401ef6SPierre Jolivet PetscCheck(cdm == dmCoarse, PetscObjectComm((PetscObject)dmFine), PETSC_ERR_SUP, "Only interpolation from coarse DM for now"); 44340a96aa3bSJed Brown 44350a96aa3bSJed Brown { 44360a96aa3bSJed Brown DM plexF, plexC; 44370a96aa3bSJed Brown PetscSF sf; 44380a96aa3bSJed Brown PetscInt *cids; 44390a96aa3bSJed Brown PetscInt dofPerDim[4] = {1, 1, 1, 1}; 44400a96aa3bSJed Brown 44419566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmCoarse, &plexC)); 44429566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmFine, &plexF)); 44439566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids)); 44449566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 44459566063dSJacob Faibussowitsch PetscCall(DMPlexComputeInterpolatorTree(plexC, plexF, sf, cids, *interpolation)); 44469566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 44479566063dSJacob Faibussowitsch PetscCall(PetscFree(cids)); 44480a96aa3bSJed Brown } 44499566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*interpolation, NULL, "-interp_mat_view")); 44500a96aa3bSJed Brown /* Use naive scaling */ 44519566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolationScale(dmCoarse, dmFine, *interpolation, scaling)); 44523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44530a96aa3bSJed Brown } 44540a96aa3bSJed Brown 44550a96aa3bSJed Brown #define DMCreateInjection_pforest _append_pforest(DMCreateInjection) 4456d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateInjection_pforest(DM dmCoarse, DM dmFine, Mat *injection) 4457d71ae5a4SJacob Faibussowitsch { 44580a96aa3bSJed Brown PetscSection gsc, gsf; 44590a96aa3bSJed Brown PetscInt m, n; 44600a96aa3bSJed Brown DM cdm; 44610a96aa3bSJed Brown 44620a96aa3bSJed Brown PetscFunctionBegin; 44639566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 44649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &n)); 44659566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 44669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &m)); 44670a96aa3bSJed Brown 44689566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)dmFine), injection)); 44699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*injection, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 44709566063dSJacob Faibussowitsch PetscCall(MatSetType(*injection, MATAIJ)); 44710a96aa3bSJed Brown 44729566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 447308401ef6SPierre Jolivet PetscCheck(cdm == dmCoarse, PetscObjectComm((PetscObject)dmFine), PETSC_ERR_SUP, "Only injection to coarse DM for now"); 44740a96aa3bSJed Brown 44750a96aa3bSJed Brown { 44760a96aa3bSJed Brown DM plexF, plexC; 44770a96aa3bSJed Brown PetscSF sf; 44780a96aa3bSJed Brown PetscInt *cids; 44790a96aa3bSJed Brown PetscInt dofPerDim[4] = {1, 1, 1, 1}; 44800a96aa3bSJed Brown 44819566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmCoarse, &plexC)); 44829566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmFine, &plexF)); 44839566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids)); 44849566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 44859566063dSJacob Faibussowitsch PetscCall(DMPlexComputeInjectorTree(plexC, plexF, sf, cids, *injection)); 44869566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 44879566063dSJacob Faibussowitsch PetscCall(PetscFree(cids)); 44880a96aa3bSJed Brown } 44899566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*injection, NULL, "-inject_mat_view")); 44900a96aa3bSJed Brown /* Use naive scaling */ 44913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44920a96aa3bSJed Brown } 44930a96aa3bSJed Brown 44940a96aa3bSJed Brown #define DMForestTransferVecFromBase_pforest _append_pforest(DMForestTransferVecFromBase) 4495d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestTransferVecFromBase_pforest(DM dm, Vec vecIn, Vec vecOut) 4496d71ae5a4SJacob Faibussowitsch { 44970a96aa3bSJed Brown DM dmIn, dmVecIn, base, basec, plex, coarseDM; 44980a96aa3bSJed Brown DM *hierarchy; 44990a96aa3bSJed Brown PetscSF sfRed = NULL; 45000a96aa3bSJed Brown PetscDS ds; 45010a96aa3bSJed Brown Vec vecInLocal, vecOutLocal; 45020a96aa3bSJed Brown DMLabel subpointMap; 45030a96aa3bSJed Brown PetscInt minLevel, mh, n_hi, i; 45040a96aa3bSJed Brown PetscBool hiforest, *hierarchy_forest; 45050a96aa3bSJed Brown 45060a96aa3bSJed Brown PetscFunctionBegin; 45079566063dSJacob Faibussowitsch PetscCall(VecGetDM(vecIn, &dmVecIn)); 45089566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmVecIn, &ds)); 450928b400f6SJacob Faibussowitsch PetscCheck(ds, PetscObjectComm((PetscObject)dmVecIn), PETSC_ERR_SUP, "Cannot transfer without a PetscDS object"); 45100a96aa3bSJed Brown { /* we cannot stick user contexts into function callbacks for DMProjectFieldLocal! */ 45110a96aa3bSJed Brown PetscSection section; 45120a96aa3bSJed Brown PetscInt Nf; 45130a96aa3bSJed Brown 45149566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmVecIn, §ion)); 45159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 451663a3b9bcSJacob Faibussowitsch PetscCheck(Nf <= 3, PetscObjectComm((PetscObject)dmVecIn), PETSC_ERR_SUP, "Number of fields %" PetscInt_FMT " are currently not supported! Send an email at petsc-dev@mcs.anl.gov", Nf); 45170a96aa3bSJed Brown } 45189566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &minLevel)); 451963a3b9bcSJacob Faibussowitsch PetscCheck(!minLevel, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Cannot transfer with minimum refinement set to %" PetscInt_FMT ". Rerun with DMForestSetMinimumRefinement(dm,0)", minLevel); 45209566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 452128b400f6SJacob Faibussowitsch PetscCheck(base, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Missing base DM"); 45220a96aa3bSJed Brown 45239566063dSJacob Faibussowitsch PetscCall(VecSet(vecOut, 0.0)); 45240a96aa3bSJed Brown if (dmVecIn == base) { /* sequential runs */ 45259566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)vecIn)); 45260a96aa3bSJed Brown } else { 45270a96aa3bSJed Brown PetscSection secIn, secInRed; 45280a96aa3bSJed Brown Vec vecInRed, vecInLocal; 45290a96aa3bSJed Brown 45309566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)base, "_base_migration_sf", (PetscObject *)&sfRed)); 453128b400f6SJacob Faibussowitsch PetscCheck(sfRed, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not the DM set with DMForestSetBaseDM()"); 45329566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmVecIn), &secInRed)); 45339566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &vecInRed)); 45349566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmVecIn, &secIn)); 45359566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmVecIn, &vecInLocal)); 45369566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmVecIn, vecIn, INSERT_VALUES, vecInLocal)); 45379566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmVecIn, vecIn, INSERT_VALUES, vecInLocal)); 45389566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dmVecIn, sfRed, secIn, vecInLocal, secInRed, vecInRed)); 45399566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmVecIn, &vecInLocal)); 45409566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&secInRed)); 45410a96aa3bSJed Brown vecIn = vecInRed; 45420a96aa3bSJed Brown } 45430a96aa3bSJed Brown 45440a96aa3bSJed Brown /* we first search through the AdaptivityForest hierarchy 45450a96aa3bSJed Brown once we found the first disconnected forest, we upsweep the DM hierarchy */ 45460a96aa3bSJed Brown hiforest = PETSC_TRUE; 45470a96aa3bSJed Brown 45480a96aa3bSJed Brown /* upsweep to the coarsest DM */ 45490a96aa3bSJed Brown n_hi = 0; 45500a96aa3bSJed Brown coarseDM = dm; 45510a96aa3bSJed Brown do { 45520a96aa3bSJed Brown PetscBool isforest; 45530a96aa3bSJed Brown 45540a96aa3bSJed Brown dmIn = coarseDM; 45550a96aa3bSJed Brown /* need to call DMSetUp to have the hierarchy recursively setup */ 45569566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmIn)); 45579566063dSJacob Faibussowitsch PetscCall(DMIsForest(dmIn, &isforest)); 455828b400f6SJacob Faibussowitsch PetscCheck(isforest, PetscObjectComm((PetscObject)dmIn), PETSC_ERR_SUP, "Cannot currently transfer through a mixed hierarchy! Found DM type %s", ((PetscObject)dmIn)->type_name); 45590a96aa3bSJed Brown coarseDM = NULL; 456048a46eb9SPierre Jolivet if (hiforest) PetscCall(DMForestGetAdaptivityForest(dmIn, &coarseDM)); 45610a96aa3bSJed Brown if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */ 45620a96aa3bSJed Brown hiforest = PETSC_FALSE; 45639566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmIn, &coarseDM)); 45640a96aa3bSJed Brown } 45650a96aa3bSJed Brown n_hi++; 45660a96aa3bSJed Brown } while (coarseDM); 45670a96aa3bSJed Brown 45689566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(n_hi, &hierarchy, n_hi, &hierarchy_forest)); 45690a96aa3bSJed Brown 45700a96aa3bSJed Brown i = 0; 45710a96aa3bSJed Brown hiforest = PETSC_TRUE; 45720a96aa3bSJed Brown coarseDM = dm; 45730a96aa3bSJed Brown do { 45740a96aa3bSJed Brown dmIn = coarseDM; 45750a96aa3bSJed Brown coarseDM = NULL; 457648a46eb9SPierre Jolivet if (hiforest) PetscCall(DMForestGetAdaptivityForest(dmIn, &coarseDM)); 45770a96aa3bSJed Brown if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */ 45780a96aa3bSJed Brown hiforest = PETSC_FALSE; 45799566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmIn, &coarseDM)); 45800a96aa3bSJed Brown } 45810a96aa3bSJed Brown i++; 45820a96aa3bSJed Brown hierarchy[n_hi - i] = dmIn; 45830a96aa3bSJed Brown } while (coarseDM); 45840a96aa3bSJed Brown 45850a96aa3bSJed Brown /* project base vector on the coarsest forest (minimum refinement = 0) */ 45869566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmIn, &plex)); 45870a96aa3bSJed Brown 45880a96aa3bSJed Brown /* Check this plex is compatible with the base */ 45890a96aa3bSJed Brown { 45900a96aa3bSJed Brown IS gnum[2]; 45910a96aa3bSJed Brown PetscInt ncells[2], gncells[2]; 45920a96aa3bSJed Brown 45939566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellNumbering(base, &gnum[0])); 45949566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellNumbering(plex, &gnum[1])); 45959566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(gnum[0], NULL, &ncells[0])); 45969566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(gnum[1], NULL, &ncells[1])); 45971c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(ncells, gncells, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 459863a3b9bcSJacob Faibussowitsch PetscCheck(gncells[0] == gncells[1], PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Invalid number of base cells! Expected %" PetscInt_FMT ", found %" PetscInt_FMT, gncells[0] + 1, gncells[1] + 1); 45990a96aa3bSJed Brown } 46000a96aa3bSJed Brown 46019566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmIn, "_forest_base_subpoint_map", &subpointMap)); 460228b400f6SJacob Faibussowitsch PetscCheck(subpointMap, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing _forest_base_subpoint_map label"); 46030a96aa3bSJed Brown 46049566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxProjectionHeight(base, &mh)); 46059566063dSJacob Faibussowitsch PetscCall(DMPlexSetMaxProjectionHeight(plex, mh)); 46060a96aa3bSJed Brown 46079566063dSJacob Faibussowitsch PetscCall(DMClone(base, &basec)); 46089566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dmVecIn, basec)); 46090a96aa3bSJed Brown if (sfRed) { 46109566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)vecIn)); 46110a96aa3bSJed Brown vecInLocal = vecIn; 46120a96aa3bSJed Brown } else { 46139566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(basec, &vecInLocal)); 46149566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(basec, vecIn, INSERT_VALUES, vecInLocal)); 46159566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(basec, vecIn, INSERT_VALUES, vecInLocal)); 46160a96aa3bSJed Brown } 46170a96aa3bSJed Brown 46189566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmIn, &vecOutLocal)); 46190a96aa3bSJed Brown { /* get degrees of freedom ordered onto dmIn */ 46200a96aa3bSJed Brown PetscSF basetocoarse; 46210a96aa3bSJed Brown PetscInt bStart, bEnd, nroots; 46220a96aa3bSJed Brown PetscInt iStart, iEnd, nleaves, leaf; 46230a96aa3bSJed Brown PetscMPIInt rank; 46240a96aa3bSJed Brown PetscSFNode *remotes; 46250a96aa3bSJed Brown PetscSection secIn, secOut; 46260a96aa3bSJed Brown PetscInt *remoteOffsets; 46270a96aa3bSJed Brown PetscSF transferSF; 46280a96aa3bSJed Brown const PetscScalar *inArray; 46290a96aa3bSJed Brown PetscScalar *outArray; 46300a96aa3bSJed Brown 46319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)basec), &rank)); 46329566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(basec, &bStart, &bEnd)); 46330a96aa3bSJed Brown nroots = PetscMax(bEnd - bStart, 0); 46349566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &iStart, &iEnd)); 46350a96aa3bSJed Brown nleaves = PetscMax(iEnd - iStart, 0); 46360a96aa3bSJed Brown 46379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &remotes)); 46380a96aa3bSJed Brown for (leaf = iStart; leaf < iEnd; leaf++) { 46390a96aa3bSJed Brown PetscInt index; 46400a96aa3bSJed Brown 46410a96aa3bSJed Brown remotes[leaf - iStart].rank = rank; 46429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, leaf, &index)); 46430a96aa3bSJed Brown remotes[leaf - iStart].index = index; 46440a96aa3bSJed Brown } 46450a96aa3bSJed Brown 46469566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)basec), &basetocoarse)); 46479566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(basetocoarse, nroots, nleaves, NULL, PETSC_OWN_POINTER, remotes, PETSC_OWN_POINTER)); 46489566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(basetocoarse)); 46499566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(basec, &secIn)); 46509566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmIn), &secOut)); 46519566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(basetocoarse, secIn, &remoteOffsets, secOut)); 46529566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(basetocoarse, secIn, remoteOffsets, secOut, &transferSF)); 46539566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 46549566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vecOutLocal, &outArray)); 46559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vecInLocal, &inArray)); 46569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(transferSF, MPIU_SCALAR, inArray, outArray, MPI_REPLACE)); 46579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(transferSF, MPIU_SCALAR, inArray, outArray, MPI_REPLACE)); 46589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vecInLocal, &inArray)); 46599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vecOutLocal, &outArray)); 46609566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&transferSF)); 46619566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&secOut)); 46629566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&basetocoarse)); 46630a96aa3bSJed Brown } 46649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vecInLocal)); 46659566063dSJacob Faibussowitsch PetscCall(DMDestroy(&basec)); 46669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vecIn)); 46670a96aa3bSJed Brown 46680a96aa3bSJed Brown /* output */ 46690a96aa3bSJed Brown if (n_hi > 1) { /* downsweep the stored hierarchy */ 46700a96aa3bSJed Brown Vec vecOut1, vecOut2; 46710a96aa3bSJed Brown DM fineDM; 46720a96aa3bSJed Brown 46739566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmIn, &vecOut1)); 46749566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobal(dmIn, vecOutLocal, INSERT_VALUES, vecOut1)); 46759566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmIn, &vecOutLocal)); 46760a96aa3bSJed Brown for (i = 1; i < n_hi - 1; i++) { 46770a96aa3bSJed Brown fineDM = hierarchy[i]; 46789566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(fineDM, &vecOut2)); 46799566063dSJacob Faibussowitsch PetscCall(DMForestTransferVec(dmIn, vecOut1, fineDM, vecOut2, PETSC_TRUE, 0.0)); 46809566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmIn, &vecOut1)); 46810a96aa3bSJed Brown vecOut1 = vecOut2; 46820a96aa3bSJed Brown dmIn = fineDM; 46830a96aa3bSJed Brown } 46849566063dSJacob Faibussowitsch PetscCall(DMForestTransferVec(dmIn, vecOut1, dm, vecOut, PETSC_TRUE, 0.0)); 46859566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmIn, &vecOut1)); 46860a96aa3bSJed Brown } else { 46879566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobal(dmIn, vecOutLocal, INSERT_VALUES, vecOut)); 46889566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmIn, &vecOutLocal)); 46890a96aa3bSJed Brown } 46909566063dSJacob Faibussowitsch PetscCall(PetscFree2(hierarchy, hierarchy_forest)); 46913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46920a96aa3bSJed Brown } 46930a96aa3bSJed Brown 46940a96aa3bSJed Brown #define DMForestTransferVec_pforest _append_pforest(DMForestTransferVec) 4695d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestTransferVec_pforest(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut, PetscBool useBCs, PetscReal time) 4696d71ae5a4SJacob Faibussowitsch { 46970a96aa3bSJed Brown DM adaptIn, adaptOut, plexIn, plexOut; 46980a96aa3bSJed Brown DM_Forest *forestIn, *forestOut, *forestAdaptIn, *forestAdaptOut; 46990a96aa3bSJed Brown PetscInt dofPerDim[] = {1, 1, 1, 1}; 47000a96aa3bSJed Brown PetscSF inSF = NULL, outSF = NULL; 47010a96aa3bSJed Brown PetscInt *inCids = NULL, *outCids = NULL; 47020a96aa3bSJed Brown DMAdaptFlag purposeIn, purposeOut; 47030a96aa3bSJed Brown 47040a96aa3bSJed Brown PetscFunctionBegin; 47050a96aa3bSJed Brown forestOut = (DM_Forest *)dmOut->data; 47060a96aa3bSJed Brown forestIn = (DM_Forest *)dmIn->data; 47070a96aa3bSJed Brown 47089566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmOut, &adaptOut)); 47099566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmOut, &purposeOut)); 47100a96aa3bSJed Brown forestAdaptOut = adaptOut ? (DM_Forest *)adaptOut->data : NULL; 47110a96aa3bSJed Brown 47129566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmIn, &adaptIn)); 47139566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmIn, &purposeIn)); 47140a96aa3bSJed Brown forestAdaptIn = adaptIn ? (DM_Forest *)adaptIn->data : NULL; 47150a96aa3bSJed Brown 47160a96aa3bSJed Brown if (forestAdaptOut == forestIn) { 47170a96aa3bSJed Brown switch (purposeOut) { 47180a96aa3bSJed Brown case DM_ADAPT_REFINE: 47199566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids)); 47209566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47210a96aa3bSJed Brown break; 47220a96aa3bSJed Brown case DM_ADAPT_COARSEN: 47230a96aa3bSJed Brown case DM_ADAPT_COARSEN_LAST: 47249566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_TRUE, &outCids)); 47259566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47260a96aa3bSJed Brown break; 47270a96aa3bSJed Brown default: 47289566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids)); 47299566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_FALSE, &outCids)); 47309566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47319566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47320a96aa3bSJed Brown } 47330a96aa3bSJed Brown } else if (forestAdaptIn == forestOut) { 47340a96aa3bSJed Brown switch (purposeIn) { 47350a96aa3bSJed Brown case DM_ADAPT_REFINE: 47369566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_TRUE, &inCids)); 47379566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47380a96aa3bSJed Brown break; 47390a96aa3bSJed Brown case DM_ADAPT_COARSEN: 47400a96aa3bSJed Brown case DM_ADAPT_COARSEN_LAST: 47419566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids)); 47429566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47430a96aa3bSJed Brown break; 47440a96aa3bSJed Brown default: 47459566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids)); 47469566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_FALSE, &outCids)); 47479566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47489566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47490a96aa3bSJed Brown } 47500a96aa3bSJed Brown } else SETERRQ(PetscObjectComm((PetscObject)dmIn), PETSC_ERR_SUP, "Only support transfer from pre-adaptivity to post-adaptivity right now"); 47519566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmIn, &plexIn)); 47529566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmOut, &plexOut)); 47530a96aa3bSJed Brown 47549566063dSJacob Faibussowitsch PetscCall(DMPlexTransferVecTree(plexIn, vecIn, plexOut, vecOut, inSF, outSF, inCids, outCids, useBCs, time)); 47559566063dSJacob Faibussowitsch PetscCall(PetscFree(inCids)); 47569566063dSJacob Faibussowitsch PetscCall(PetscFree(outCids)); 47579566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&inSF)); 47589566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&outSF)); 47599566063dSJacob Faibussowitsch PetscCall(PetscFree(inCids)); 47609566063dSJacob Faibussowitsch PetscCall(PetscFree(outCids)); 47613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47620a96aa3bSJed Brown } 47630a96aa3bSJed Brown 47640a96aa3bSJed Brown #define DMCreateCoordinateDM_pforest _append_pforest(DMCreateCoordinateDM) 4765d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateCoordinateDM_pforest(DM dm, DM *cdm) 4766d71ae5a4SJacob Faibussowitsch { 47670a96aa3bSJed Brown DM plex; 47680a96aa3bSJed Brown 47690a96aa3bSJed Brown PetscFunctionBegin; 47700a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47719566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 47729566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(plex, cdm)); 47739566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*cdm)); 47743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47750a96aa3bSJed Brown } 47760a96aa3bSJed Brown 47770a96aa3bSJed Brown #define VecViewLocal_pforest _append_pforest(VecViewLocal) 4778d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecViewLocal_pforest(Vec vec, PetscViewer viewer) 4779d71ae5a4SJacob Faibussowitsch { 47800a96aa3bSJed Brown DM dm, plex; 47810a96aa3bSJed Brown 47820a96aa3bSJed Brown PetscFunctionBegin; 47839566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4784217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 47859566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 47869566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 47879566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local(vec, viewer)); 47889566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4789217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 47903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47910a96aa3bSJed Brown } 47920a96aa3bSJed Brown 47930a96aa3bSJed Brown #define VecView_pforest _append_pforest(VecView) 4794d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecView_pforest(Vec vec, PetscViewer viewer) 4795d71ae5a4SJacob Faibussowitsch { 47960a96aa3bSJed Brown DM dm, plex; 47970a96aa3bSJed Brown 47980a96aa3bSJed Brown PetscFunctionBegin; 47999566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4800217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 48019566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48029566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 48039566063dSJacob Faibussowitsch PetscCall(VecView_Plex(vec, viewer)); 48049566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4805217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 48063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48070a96aa3bSJed Brown } 48080a96aa3bSJed Brown 48090a96aa3bSJed Brown #define VecView_pforest_Native _infix_pforest(VecView, _Native) 4810d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecView_pforest_Native(Vec vec, PetscViewer viewer) 4811d71ae5a4SJacob Faibussowitsch { 48120a96aa3bSJed Brown DM dm, plex; 48130a96aa3bSJed Brown 48140a96aa3bSJed Brown PetscFunctionBegin; 48159566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4816217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 48179566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48189566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 48199566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Native(vec, viewer)); 48209566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4821217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 48223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48230a96aa3bSJed Brown } 48240a96aa3bSJed Brown 48250a96aa3bSJed Brown #define VecLoad_pforest _append_pforest(VecLoad) 4826d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecLoad_pforest(Vec vec, PetscViewer viewer) 4827d71ae5a4SJacob Faibussowitsch { 48280a96aa3bSJed Brown DM dm, plex; 48290a96aa3bSJed Brown 48300a96aa3bSJed Brown PetscFunctionBegin; 48319566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4832217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 48339566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48349566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 48359566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex(vec, viewer)); 48369566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4837217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 48383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48390a96aa3bSJed Brown } 48400a96aa3bSJed Brown 48410a96aa3bSJed Brown #define VecLoad_pforest_Native _infix_pforest(VecLoad, _Native) 4842d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecLoad_pforest_Native(Vec vec, PetscViewer viewer) 4843d71ae5a4SJacob Faibussowitsch { 48440a96aa3bSJed Brown DM dm, plex; 48450a96aa3bSJed Brown 48460a96aa3bSJed Brown PetscFunctionBegin; 48479566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4848217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 48499566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48509566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 48519566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex_Native(vec, viewer)); 48529566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4853217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 48543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48550a96aa3bSJed Brown } 48560a96aa3bSJed Brown 48570a96aa3bSJed Brown #define DMCreateGlobalVector_pforest _append_pforest(DMCreateGlobalVector) 4858d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateGlobalVector_pforest(DM dm, Vec *vec) 4859d71ae5a4SJacob Faibussowitsch { 48600a96aa3bSJed Brown PetscFunctionBegin; 48619566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector_Section_Private(dm, vec)); 48629566063dSJacob Faibussowitsch /* PetscCall(VecSetOperation(*vec, VECOP_DUPLICATE, (void(*)(void)) VecDuplicate_MPI_DM)); */ 48639566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_VIEW, (void (*)(void))VecView_pforest)); 48649566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_VIEWNATIVE, (void (*)(void))VecView_pforest_Native)); 48659566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_LOAD, (void (*)(void))VecLoad_pforest)); 48669566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_LOADNATIVE, (void (*)(void))VecLoad_pforest_Native)); 48673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48680a96aa3bSJed Brown } 48690a96aa3bSJed Brown 48700a96aa3bSJed Brown #define DMCreateLocalVector_pforest _append_pforest(DMCreateLocalVector) 4871d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateLocalVector_pforest(DM dm, Vec *vec) 4872d71ae5a4SJacob Faibussowitsch { 48730a96aa3bSJed Brown PetscFunctionBegin; 48749566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector_Section_Private(dm, vec)); 48759566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_VIEW, (void (*)(void))VecViewLocal_pforest)); 48763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48770a96aa3bSJed Brown } 48780a96aa3bSJed Brown 48790a96aa3bSJed Brown #define DMCreateMatrix_pforest _append_pforest(DMCreateMatrix) 4880d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateMatrix_pforest(DM dm, Mat *mat) 4881d71ae5a4SJacob Faibussowitsch { 48820a96aa3bSJed Brown DM plex; 48830a96aa3bSJed Brown 48840a96aa3bSJed Brown PetscFunctionBegin; 48850a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48869566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48870a96aa3bSJed Brown if (plex->prealloc_only != dm->prealloc_only) plex->prealloc_only = dm->prealloc_only; /* maybe this should go into forest->plex */ 48882495aca6SStefano Zampini PetscCall(DMSetMatType(plex, dm->mattype)); 48899566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(plex, mat)); 48909566063dSJacob Faibussowitsch PetscCall(MatSetDM(*mat, dm)); 48913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48920a96aa3bSJed Brown } 48930a96aa3bSJed Brown 48940a96aa3bSJed Brown #define DMProjectFunctionLocal_pforest _append_pforest(DMProjectFunctionLocal) 4895d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMProjectFunctionLocal_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 4896d71ae5a4SJacob Faibussowitsch { 48970a96aa3bSJed Brown DM plex; 48980a96aa3bSJed Brown 48990a96aa3bSJed Brown PetscFunctionBegin; 49000a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49019566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49029566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(plex, time, funcs, ctxs, mode, localX)); 49033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49040a96aa3bSJed Brown } 49050a96aa3bSJed Brown 49060a96aa3bSJed Brown #define DMProjectFunctionLabelLocal_pforest _append_pforest(DMProjectFunctionLabelLocal) 4907d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMProjectFunctionLabelLocal_pforest(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Ncc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 4908d71ae5a4SJacob Faibussowitsch { 49090a96aa3bSJed Brown DM plex; 49100a96aa3bSJed Brown 49110a96aa3bSJed Brown PetscFunctionBegin; 49120a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49139566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49149566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(plex, time, label, numIds, ids, Ncc, comps, funcs, ctxs, mode, localX)); 49153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49160a96aa3bSJed Brown } 49170a96aa3bSJed Brown 49180a96aa3bSJed Brown #define DMProjectFieldLocal_pforest _append_pforest(DMProjectFieldLocal) 4919d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal_pforest(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 4920d71ae5a4SJacob Faibussowitsch { 49210a96aa3bSJed Brown DM plex; 49220a96aa3bSJed Brown 49230a96aa3bSJed Brown PetscFunctionBegin; 49240a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49259566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49269566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLocal(plex, time, localU, funcs, mode, localX)); 49273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49280a96aa3bSJed Brown } 49290a96aa3bSJed Brown 49300a96aa3bSJed Brown #define DMComputeL2Diff_pforest _append_pforest(DMComputeL2Diff) 4931d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 4932d71ae5a4SJacob Faibussowitsch { 49330a96aa3bSJed Brown DM plex; 49340a96aa3bSJed Brown 49350a96aa3bSJed Brown PetscFunctionBegin; 49360a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49379566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49389566063dSJacob Faibussowitsch PetscCall(DMComputeL2Diff(plex, time, funcs, ctxs, X, diff)); 49393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49400a96aa3bSJed Brown } 49410a96aa3bSJed Brown 49420a96aa3bSJed Brown #define DMComputeL2FieldDiff_pforest _append_pforest(DMComputeL2FieldDiff) 4943d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 4944d71ae5a4SJacob Faibussowitsch { 49450a96aa3bSJed Brown DM plex; 49460a96aa3bSJed Brown 49470a96aa3bSJed Brown PetscFunctionBegin; 49480a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49499566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49509566063dSJacob Faibussowitsch PetscCall(DMComputeL2FieldDiff(plex, time, funcs, ctxs, X, diff)); 49513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49520a96aa3bSJed Brown } 49530a96aa3bSJed Brown 49540a96aa3bSJed Brown #define DMCreatelocalsection_pforest _append_pforest(DMCreatelocalsection) 4955d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreatelocalsection_pforest(DM dm) 4956d71ae5a4SJacob Faibussowitsch { 49570a96aa3bSJed Brown DM plex; 49580a96aa3bSJed Brown PetscSection section; 49590a96aa3bSJed Brown 49600a96aa3bSJed Brown PetscFunctionBegin; 49610a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49629566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49639566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex, §ion)); 49649566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 49653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49660a96aa3bSJed Brown } 49670a96aa3bSJed Brown 49680a96aa3bSJed Brown #define DMCreateDefaultConstraints_pforest _append_pforest(DMCreateDefaultConstraints) 4969d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateDefaultConstraints_pforest(DM dm) 4970d71ae5a4SJacob Faibussowitsch { 49710a96aa3bSJed Brown DM plex; 49720a96aa3bSJed Brown Mat mat; 497379769bd5SJed Brown Vec bias; 49740a96aa3bSJed Brown PetscSection section; 49750a96aa3bSJed Brown 49760a96aa3bSJed Brown PetscFunctionBegin; 49770a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49789566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49799566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(plex, §ion, &mat, &bias)); 49809566063dSJacob Faibussowitsch PetscCall(DMSetDefaultConstraints(dm, section, mat, bias)); 49813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49820a96aa3bSJed Brown } 49830a96aa3bSJed Brown 49840a96aa3bSJed Brown #define DMGetDimPoints_pforest _append_pforest(DMGetDimPoints) 4985d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGetDimPoints_pforest(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 4986d71ae5a4SJacob Faibussowitsch { 49870a96aa3bSJed Brown DM plex; 49880a96aa3bSJed Brown 49890a96aa3bSJed Brown PetscFunctionBegin; 49900a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49919566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49929566063dSJacob Faibussowitsch PetscCall(DMGetDimPoints(plex, dim, cStart, cEnd)); 49933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49940a96aa3bSJed Brown } 49950a96aa3bSJed Brown 49960a96aa3bSJed Brown /* Need to forward declare */ 49970a96aa3bSJed Brown #define DMInitialize_pforest _append_pforest(DMInitialize) 49980a96aa3bSJed Brown static PetscErrorCode DMInitialize_pforest(DM dm); 49990a96aa3bSJed Brown 50000a96aa3bSJed Brown #define DMClone_pforest _append_pforest(DMClone) 5001d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMClone_pforest(DM dm, DM *newdm) 5002d71ae5a4SJacob Faibussowitsch { 50030a96aa3bSJed Brown PetscFunctionBegin; 50049566063dSJacob Faibussowitsch PetscCall(DMClone_Forest(dm, newdm)); 50059566063dSJacob Faibussowitsch PetscCall(DMInitialize_pforest(*newdm)); 50063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50070a96aa3bSJed Brown } 50080a96aa3bSJed Brown 50090a96aa3bSJed Brown #define DMForestCreateCellChart_pforest _append_pforest(DMForestCreateCellChart) 5010d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestCreateCellChart_pforest(DM dm, PetscInt *cStart, PetscInt *cEnd) 5011d71ae5a4SJacob Faibussowitsch { 50120a96aa3bSJed Brown DM_Forest *forest; 50130a96aa3bSJed Brown DM_Forest_pforest *pforest; 50140a96aa3bSJed Brown PetscInt overlap; 50150a96aa3bSJed Brown 50160a96aa3bSJed Brown PetscFunctionBegin; 50179566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 50180a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 50190a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 50200a96aa3bSJed Brown *cStart = 0; 50219566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm, &overlap)); 50220a96aa3bSJed Brown if (overlap && pforest->ghost) { 50230a96aa3bSJed Brown *cEnd = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[pforest->forest->mpisize]; 50240a96aa3bSJed Brown } else { 50250a96aa3bSJed Brown *cEnd = pforest->forest->local_num_quadrants; 50260a96aa3bSJed Brown } 50273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50280a96aa3bSJed Brown } 50290a96aa3bSJed Brown 50300a96aa3bSJed Brown #define DMForestCreateCellSF_pforest _append_pforest(DMForestCreateCellSF) 5031d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestCreateCellSF_pforest(DM dm, PetscSF *cellSF) 5032d71ae5a4SJacob Faibussowitsch { 50330a96aa3bSJed Brown DM_Forest *forest; 50340a96aa3bSJed Brown DM_Forest_pforest *pforest; 50350a96aa3bSJed Brown PetscMPIInt rank; 50360a96aa3bSJed Brown PetscInt overlap; 50370a96aa3bSJed Brown PetscInt cStart, cEnd, cLocalStart, cLocalEnd; 50380a96aa3bSJed Brown PetscInt nRoots, nLeaves, *mine = NULL; 50390a96aa3bSJed Brown PetscSFNode *remote = NULL; 50400a96aa3bSJed Brown PetscSF sf; 50410a96aa3bSJed Brown 50420a96aa3bSJed Brown PetscFunctionBegin; 50439566063dSJacob Faibussowitsch PetscCall(DMForestGetCellChart(dm, &cStart, &cEnd)); 50440a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 50450a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 50460a96aa3bSJed Brown nRoots = cEnd - cStart; 50470a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 50480a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 50490a96aa3bSJed Brown nLeaves = 0; 50509566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm, &overlap)); 50519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 50520a96aa3bSJed Brown if (overlap && pforest->ghost) { 50530a96aa3bSJed Brown PetscSFNode *mirror; 50540a96aa3bSJed Brown p4est_quadrant_t *mirror_array; 50550a96aa3bSJed Brown PetscInt nMirror, nGhostPre, nSelf, q; 50560a96aa3bSJed Brown void **mirrorPtrs; 50570a96aa3bSJed Brown 50580a96aa3bSJed Brown nMirror = (PetscInt)pforest->ghost->mirrors.elem_count; 50590a96aa3bSJed Brown nSelf = cLocalEnd - cLocalStart; 50600a96aa3bSJed Brown nLeaves = nRoots - nSelf; 50610a96aa3bSJed Brown nGhostPre = (PetscInt)pforest->ghost->proc_offsets[rank]; 50629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &mine)); 50639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &remote)); 50649566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nMirror, &mirror, nMirror, &mirrorPtrs)); 50650a96aa3bSJed Brown mirror_array = (p4est_quadrant_t *)pforest->ghost->mirrors.array; 50660a96aa3bSJed Brown for (q = 0; q < nMirror; q++) { 5067f4f49eeaSPierre Jolivet p4est_quadrant_t *mir = &mirror_array[q]; 50680a96aa3bSJed Brown 50690a96aa3bSJed Brown mirror[q].rank = rank; 50700a96aa3bSJed Brown mirror[q].index = (PetscInt)mir->p.piggy3.local_num + cLocalStart; 5071f4f49eeaSPierre Jolivet mirrorPtrs[q] = (void *)&mirror[q]; 50720a96aa3bSJed Brown } 5073792fecdfSBarry Smith PetscCallP4est(p4est_ghost_exchange_custom, (pforest->forest, pforest->ghost, sizeof(PetscSFNode), mirrorPtrs, remote)); 50749566063dSJacob Faibussowitsch PetscCall(PetscFree2(mirror, mirrorPtrs)); 50750a96aa3bSJed Brown for (q = 0; q < nGhostPre; q++) mine[q] = q; 50760a96aa3bSJed Brown for (; q < nLeaves; q++) mine[q] = (q - nGhostPre) + cLocalEnd; 50770a96aa3bSJed Brown } 50789566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &sf)); 50799566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, nRoots, nLeaves, mine, PETSC_OWN_POINTER, remote, PETSC_OWN_POINTER)); 50800a96aa3bSJed Brown *cellSF = sf; 50813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50820a96aa3bSJed Brown } 50830a96aa3bSJed Brown 5084d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateNeumannOverlap_pforest(DM dm, IS *ovl, Mat *J, PetscErrorCode (**setup)(Mat, PetscReal, Vec, Vec, PetscReal, IS, void *), void **setup_ctx) 5085d71ae5a4SJacob Faibussowitsch { 50860a96aa3bSJed Brown DM plex; 50870a96aa3bSJed Brown 50880a96aa3bSJed Brown PetscFunctionBegin; 50899566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 5090e4d5475eSStefano Zampini PetscCall(DMCopyAuxiliaryVec(dm, plex)); 50919566063dSJacob Faibussowitsch PetscCall(DMCreateNeumannOverlap_Plex(plex, ovl, J, setup, setup_ctx)); 5092e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(plex)); 50930a96aa3bSJed Brown if (!*setup) { 50949566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, "MatComputeNeumannOverlap_C", setup)); 509548a46eb9SPierre Jolivet if (*setup) PetscCall(PetscObjectCompose((PetscObject)*ovl, "_DM_Original_HPDDM", (PetscObject)dm)); 50960a96aa3bSJed Brown } 50973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50980a96aa3bSJed Brown } 50990a96aa3bSJed Brown 5100907a3e9cSStefano Zampini #define DMCreateDomainDecomposition_pforest _append_pforest(DMCreateDomainDecomposition) 5101907a3e9cSStefano Zampini static PetscErrorCode DMCreateDomainDecomposition_pforest(DM dm, PetscInt *nsub, char ***names, IS **innerises, IS **outerises, DM **dms) 5102907a3e9cSStefano Zampini { 5103907a3e9cSStefano Zampini DM plex; 5104907a3e9cSStefano Zampini 5105907a3e9cSStefano Zampini PetscFunctionBegin; 5106907a3e9cSStefano Zampini PetscCall(DMPforestGetPlex(dm, &plex)); 5107e4d5475eSStefano Zampini PetscCall(DMCopyAuxiliaryVec(dm, plex)); 5108907a3e9cSStefano Zampini PetscCall(DMCreateDomainDecomposition(plex, nsub, names, innerises, outerises, dms)); 5109e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(plex)); 5110907a3e9cSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 5111907a3e9cSStefano Zampini } 5112907a3e9cSStefano Zampini 5113907a3e9cSStefano Zampini #define DMCreateDomainDecompositionScatters_pforest _append_pforest(DMCreateDomainDecompositionScatters) 5114907a3e9cSStefano Zampini static PetscErrorCode DMCreateDomainDecompositionScatters_pforest(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **lscat) 5115907a3e9cSStefano Zampini { 5116907a3e9cSStefano Zampini DM plex; 5117907a3e9cSStefano Zampini 5118907a3e9cSStefano Zampini PetscFunctionBegin; 5119907a3e9cSStefano Zampini PetscCall(DMPforestGetPlex(dm, &plex)); 5120e4d5475eSStefano Zampini PetscCall(DMCopyAuxiliaryVec(dm, plex)); 5121907a3e9cSStefano Zampini PetscCall(DMCreateDomainDecompositionScatters(plex, n, subdms, iscat, oscat, lscat)); 5122907a3e9cSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 5123907a3e9cSStefano Zampini } 5124907a3e9cSStefano Zampini 5125d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMInitialize_pforest(DM dm) 5126d71ae5a4SJacob Faibussowitsch { 51270a96aa3bSJed Brown PetscFunctionBegin; 51280a96aa3bSJed Brown dm->ops->setup = DMSetUp_pforest; 51290a96aa3bSJed Brown dm->ops->view = DMView_pforest; 51300a96aa3bSJed Brown dm->ops->clone = DMClone_pforest; 51310a96aa3bSJed Brown dm->ops->createinterpolation = DMCreateInterpolation_pforest; 51320a96aa3bSJed Brown dm->ops->createinjection = DMCreateInjection_pforest; 51330a96aa3bSJed Brown dm->ops->setfromoptions = DMSetFromOptions_pforest; 51340a96aa3bSJed Brown dm->ops->createcoordinatedm = DMCreateCoordinateDM_pforest; 51350a96aa3bSJed Brown dm->ops->createglobalvector = DMCreateGlobalVector_pforest; 51360a96aa3bSJed Brown dm->ops->createlocalvector = DMCreateLocalVector_pforest; 51370a96aa3bSJed Brown dm->ops->creatematrix = DMCreateMatrix_pforest; 51380a96aa3bSJed Brown dm->ops->projectfunctionlocal = DMProjectFunctionLocal_pforest; 51390a96aa3bSJed Brown dm->ops->projectfunctionlabellocal = DMProjectFunctionLabelLocal_pforest; 51400a96aa3bSJed Brown dm->ops->projectfieldlocal = DMProjectFieldLocal_pforest; 51410a96aa3bSJed Brown dm->ops->createlocalsection = DMCreatelocalsection_pforest; 51420a96aa3bSJed Brown dm->ops->createdefaultconstraints = DMCreateDefaultConstraints_pforest; 51430a96aa3bSJed Brown dm->ops->computel2diff = DMComputeL2Diff_pforest; 51440a96aa3bSJed Brown dm->ops->computel2fielddiff = DMComputeL2FieldDiff_pforest; 51450a96aa3bSJed Brown dm->ops->getdimpoints = DMGetDimPoints_pforest; 5146907a3e9cSStefano Zampini dm->ops->createdomaindecomposition = DMCreateDomainDecomposition_pforest; 5147907a3e9cSStefano Zampini dm->ops->createddscatters = DMCreateDomainDecompositionScatters_pforest; 51480a96aa3bSJed Brown 51499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, PetscStringize(DMConvert_plex_pforest) "_C", DMConvert_plex_pforest)); 51509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, PetscStringize(DMConvert_pforest_plex) "_C", DMConvert_pforest_plex)); 51519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, "DMCreateNeumannOverlap_C", DMCreateNeumannOverlap_pforest)); 51529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, "DMPlexGetOverlap_C", DMForestGetPartitionOverlap)); 51533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51540a96aa3bSJed Brown } 51550a96aa3bSJed Brown 51560a96aa3bSJed Brown #define DMCreate_pforest _append_pforest(DMCreate) 5157d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreate_pforest(DM dm) 5158d71ae5a4SJacob Faibussowitsch { 51590a96aa3bSJed Brown DM_Forest *forest; 51600a96aa3bSJed Brown DM_Forest_pforest *pforest; 51610a96aa3bSJed Brown 51620a96aa3bSJed Brown PetscFunctionBegin; 51639566063dSJacob Faibussowitsch PetscCall(PetscP4estInitialize()); 51649566063dSJacob Faibussowitsch PetscCall(DMCreate_Forest(dm)); 51659566063dSJacob Faibussowitsch PetscCall(DMInitialize_pforest(dm)); 51669566063dSJacob Faibussowitsch PetscCall(DMSetDimension(dm, P4EST_DIM)); 51670a96aa3bSJed Brown 51680a96aa3bSJed Brown /* set forest defaults */ 51699566063dSJacob Faibussowitsch PetscCall(DMForestSetTopology(dm, "unit")); 51709566063dSJacob Faibussowitsch PetscCall(DMForestSetMinimumRefinement(dm, 0)); 51719566063dSJacob Faibussowitsch PetscCall(DMForestSetInitialRefinement(dm, 0)); 51729566063dSJacob Faibussowitsch PetscCall(DMForestSetMaximumRefinement(dm, P4EST_QMAXLEVEL)); 51739566063dSJacob Faibussowitsch PetscCall(DMForestSetGradeFactor(dm, 2)); 51749566063dSJacob Faibussowitsch PetscCall(DMForestSetAdjacencyDimension(dm, 0)); 51759566063dSJacob Faibussowitsch PetscCall(DMForestSetPartitionOverlap(dm, 0)); 51760a96aa3bSJed Brown 51770a96aa3bSJed Brown /* create p4est data */ 51784dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&pforest)); 51790a96aa3bSJed Brown 51800a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 51810a96aa3bSJed Brown forest->data = pforest; 51820a96aa3bSJed Brown forest->destroy = DMForestDestroy_pforest; 51830a96aa3bSJed Brown forest->ftemplate = DMForestTemplate_pforest; 51840a96aa3bSJed Brown forest->transfervec = DMForestTransferVec_pforest; 51850a96aa3bSJed Brown forest->transfervecfrombase = DMForestTransferVecFromBase_pforest; 51860a96aa3bSJed Brown forest->createcellchart = DMForestCreateCellChart_pforest; 51870a96aa3bSJed Brown forest->createcellsf = DMForestCreateCellSF_pforest; 51880a96aa3bSJed Brown forest->clearadaptivityforest = DMForestClearAdaptivityForest_pforest; 51890a96aa3bSJed Brown forest->getadaptivitysuccess = DMForestGetAdaptivitySuccess_pforest; 51900a96aa3bSJed Brown pforest->topo = NULL; 51910a96aa3bSJed Brown pforest->forest = NULL; 51920a96aa3bSJed Brown pforest->ghost = NULL; 51930a96aa3bSJed Brown pforest->lnodes = NULL; 51940a96aa3bSJed Brown pforest->partition_for_coarsening = PETSC_TRUE; 51950a96aa3bSJed Brown pforest->coarsen_hierarchy = PETSC_FALSE; 51960a96aa3bSJed Brown pforest->cLocalStart = -1; 51970a96aa3bSJed Brown pforest->cLocalEnd = -1; 51980a96aa3bSJed Brown pforest->labelsFinalized = PETSC_FALSE; 51990a96aa3bSJed Brown pforest->ghostName = NULL; 52003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52010a96aa3bSJed Brown } 52020a96aa3bSJed Brown 52030a96aa3bSJed Brown #endif /* defined(PETSC_HAVE_P4EST) */ 5204