10a96aa3bSJed Brown #include <petscds.h> 20a96aa3bSJed Brown #include <petsc/private/dmimpl.h> 30a96aa3bSJed Brown #include <petsc/private/dmforestimpl.h> 40a96aa3bSJed Brown #include <petsc/private/dmpleximpl.h> 50a96aa3bSJed Brown #include <petsc/private/dmlabelimpl.h> 60a96aa3bSJed Brown #include <petsc/private/viewerimpl.h> 70a96aa3bSJed Brown #include <../src/sys/classes/viewer/impls/vtk/vtkvimpl.h> 80a96aa3bSJed Brown #include "petsc_p4est_package.h" 90a96aa3bSJed Brown 100a96aa3bSJed Brown #if defined(PETSC_HAVE_P4EST) 110a96aa3bSJed Brown 120a96aa3bSJed Brown #if !defined(P4_TO_P8) 130a96aa3bSJed Brown #include <p4est.h> 140a96aa3bSJed Brown #include <p4est_extended.h> 150a96aa3bSJed Brown #include <p4est_geometry.h> 160a96aa3bSJed Brown #include <p4est_ghost.h> 170a96aa3bSJed Brown #include <p4est_lnodes.h> 180a96aa3bSJed Brown #include <p4est_vtk.h> 190a96aa3bSJed Brown #include <p4est_plex.h> 200a96aa3bSJed Brown #include <p4est_bits.h> 210a96aa3bSJed Brown #include <p4est_algorithms.h> 220a96aa3bSJed Brown #else 230a96aa3bSJed Brown #include <p8est.h> 240a96aa3bSJed Brown #include <p8est_extended.h> 250a96aa3bSJed Brown #include <p8est_geometry.h> 260a96aa3bSJed Brown #include <p8est_ghost.h> 270a96aa3bSJed Brown #include <p8est_lnodes.h> 280a96aa3bSJed Brown #include <p8est_vtk.h> 290a96aa3bSJed Brown #include <p8est_plex.h> 300a96aa3bSJed Brown #include <p8est_bits.h> 310a96aa3bSJed Brown #include <p8est_algorithms.h> 320a96aa3bSJed Brown #endif 330a96aa3bSJed Brown 340a96aa3bSJed Brown typedef enum {PATTERN_HASH,PATTERN_FRACTAL,PATTERN_CORNER,PATTERN_CENTER,PATTERN_COUNT} DMRefinePattern; 350a96aa3bSJed Brown static const char *DMRefinePatternName[PATTERN_COUNT] = {"hash","fractal","corner","center"}; 360a96aa3bSJed Brown 370a96aa3bSJed Brown typedef struct _DMRefinePatternCtx 380a96aa3bSJed Brown { 390a96aa3bSJed Brown PetscInt corner; 400a96aa3bSJed Brown PetscBool fractal[P4EST_CHILDREN]; 410a96aa3bSJed Brown PetscReal hashLikelihood; 420a96aa3bSJed Brown PetscInt maxLevel; 430a96aa3bSJed Brown p4est_refine_t refine_fn; 440a96aa3bSJed Brown } 450a96aa3bSJed Brown DMRefinePatternCtx; 460a96aa3bSJed Brown 470a96aa3bSJed Brown static int DMRefinePattern_Corner(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 480a96aa3bSJed Brown { 490a96aa3bSJed Brown p4est_quadrant_t root, rootcorner; 500a96aa3bSJed Brown DMRefinePatternCtx *ctx; 510a96aa3bSJed Brown 520a96aa3bSJed Brown ctx = (DMRefinePatternCtx*) p4est->user_pointer; 530a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 540a96aa3bSJed Brown 550a96aa3bSJed Brown root.x = root.y = 0; 560a96aa3bSJed Brown #if defined(P4_TO_P8) 570a96aa3bSJed Brown root.z = 0; 580a96aa3bSJed Brown #endif 590a96aa3bSJed Brown root.level = 0; 600a96aa3bSJed Brown p4est_quadrant_corner_descendant(&root,&rootcorner,ctx->corner,quadrant->level); 610a96aa3bSJed Brown if (p4est_quadrant_is_equal(quadrant,&rootcorner)) return 1; 620a96aa3bSJed Brown return 0; 630a96aa3bSJed Brown } 640a96aa3bSJed Brown 650a96aa3bSJed Brown static int DMRefinePattern_Center(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 660a96aa3bSJed Brown { 670a96aa3bSJed Brown int cid; 680a96aa3bSJed Brown p4est_quadrant_t ancestor, ancestorcorner; 690a96aa3bSJed Brown DMRefinePatternCtx *ctx; 700a96aa3bSJed Brown 710a96aa3bSJed Brown ctx = (DMRefinePatternCtx*) p4est->user_pointer; 720a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 730a96aa3bSJed Brown if (quadrant->level <= 1) return 1; 740a96aa3bSJed Brown 750a96aa3bSJed Brown p4est_quadrant_ancestor(quadrant,1,&ancestor); 760a96aa3bSJed Brown cid = p4est_quadrant_child_id(&ancestor); 770a96aa3bSJed Brown p4est_quadrant_corner_descendant(&ancestor,&ancestorcorner,P4EST_CHILDREN - 1 - cid,quadrant->level); 780a96aa3bSJed Brown if (p4est_quadrant_is_equal(quadrant,&ancestorcorner)) return 1; 790a96aa3bSJed Brown return 0; 800a96aa3bSJed Brown } 810a96aa3bSJed Brown 820a96aa3bSJed Brown static int DMRefinePattern_Fractal(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 830a96aa3bSJed Brown { 840a96aa3bSJed Brown int cid; 850a96aa3bSJed Brown DMRefinePatternCtx *ctx; 860a96aa3bSJed Brown 870a96aa3bSJed Brown ctx = (DMRefinePatternCtx*) p4est->user_pointer; 880a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 890a96aa3bSJed Brown if (!quadrant->level) return 1; 900a96aa3bSJed Brown cid = p4est_quadrant_child_id(quadrant); 910a96aa3bSJed Brown if (ctx->fractal[cid ^ ((int) (quadrant->level % P4EST_CHILDREN))]) return 1; 920a96aa3bSJed Brown return 0; 930a96aa3bSJed Brown } 940a96aa3bSJed Brown 950a96aa3bSJed Brown /* simplified from MurmurHash3 by Austin Appleby */ 960a96aa3bSJed Brown #define DMPROT32(x, y) ((x << y) | (x >> (32 - y))) 970a96aa3bSJed Brown static uint32_t DMPforestHash(const uint32_t *blocks, uint32_t nblocks) 980a96aa3bSJed Brown { 990a96aa3bSJed Brown uint32_t c1 = 0xcc9e2d51; 1000a96aa3bSJed Brown uint32_t c2 = 0x1b873593; 1010a96aa3bSJed Brown uint32_t r1 = 15; 1020a96aa3bSJed Brown uint32_t r2 = 13; 1030a96aa3bSJed Brown uint32_t m = 5; 1040a96aa3bSJed Brown uint32_t n = 0xe6546b64; 1050a96aa3bSJed Brown uint32_t hash = 0; 1060a96aa3bSJed Brown int len = nblocks * 4; 1070a96aa3bSJed Brown uint32_t i; 1080a96aa3bSJed Brown 1090a96aa3bSJed Brown for (i = 0; i < nblocks; i++) { 1100a96aa3bSJed Brown uint32_t k; 1110a96aa3bSJed Brown 1120a96aa3bSJed Brown k = blocks[i]; 1130a96aa3bSJed Brown k *= c1; 1140a96aa3bSJed Brown k = DMPROT32(k, r1); 1150a96aa3bSJed Brown k *= c2; 1160a96aa3bSJed Brown 1170a96aa3bSJed Brown hash ^= k; 1180a96aa3bSJed Brown hash = DMPROT32(hash, r2) * m + n; 1190a96aa3bSJed Brown } 1200a96aa3bSJed Brown 1210a96aa3bSJed Brown hash ^= len; 1220a96aa3bSJed Brown hash ^= (hash >> 16); 1230a96aa3bSJed Brown hash *= 0x85ebca6b; 1240a96aa3bSJed Brown hash ^= (hash >> 13); 1250a96aa3bSJed Brown hash *= 0xc2b2ae35; 1260a96aa3bSJed Brown hash ^= (hash >> 16); 1270a96aa3bSJed Brown 1280a96aa3bSJed Brown return hash; 1290a96aa3bSJed Brown } 1300a96aa3bSJed Brown 1310a96aa3bSJed Brown #if defined(UINT32_MAX) 1320a96aa3bSJed Brown #define DMP4EST_HASH_MAX UINT32_MAX 1330a96aa3bSJed Brown #else 1340a96aa3bSJed Brown #define DMP4EST_HASH_MAX ((uint32_t) 0xffffffff) 1350a96aa3bSJed Brown #endif 1360a96aa3bSJed Brown 1370a96aa3bSJed Brown static int DMRefinePattern_Hash(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 1380a96aa3bSJed Brown { 1390a96aa3bSJed Brown uint32_t data[5]; 1400a96aa3bSJed Brown uint32_t result; 1410a96aa3bSJed Brown DMRefinePatternCtx *ctx; 1420a96aa3bSJed Brown 1430a96aa3bSJed Brown ctx = (DMRefinePatternCtx*) p4est->user_pointer; 1440a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 1450a96aa3bSJed Brown data[0] = ((uint32_t) quadrant->level) << 24; 1460a96aa3bSJed Brown data[1] = (uint32_t) which_tree; 1470a96aa3bSJed Brown data[2] = (uint32_t) quadrant->x; 1480a96aa3bSJed Brown data[3] = (uint32_t) quadrant->y; 1490a96aa3bSJed Brown #if defined(P4_TO_P8) 1500a96aa3bSJed Brown data[4] = (uint32_t) quadrant->z; 1510a96aa3bSJed Brown #endif 1520a96aa3bSJed Brown 1530a96aa3bSJed Brown result = DMPforestHash(data,2+P4EST_DIM); 1540a96aa3bSJed Brown if (((double) result / (double) DMP4EST_HASH_MAX) < ctx->hashLikelihood) return 1; 1550a96aa3bSJed Brown return 0; 1560a96aa3bSJed Brown } 1570a96aa3bSJed Brown 1580a96aa3bSJed Brown #define DMConvert_pforest_plex _infix_pforest(DMConvert,_plex) 1590a96aa3bSJed Brown static PetscErrorCode DMConvert_pforest_plex(DM,DMType,DM*); 1600a96aa3bSJed Brown 1610a96aa3bSJed Brown #define DMFTopology_pforest _append_pforest(DMFTopology) 1620a96aa3bSJed Brown typedef struct { 1630a96aa3bSJed Brown PetscInt refct; 1640a96aa3bSJed Brown p4est_connectivity_t *conn; 1650a96aa3bSJed Brown p4est_geometry_t *geom; 1660a96aa3bSJed Brown PetscInt *tree_face_to_uniq; /* p4est does not explicitly enumerate facets, but we must to keep track of labels */ 1670a96aa3bSJed Brown } DMFTopology_pforest; 1680a96aa3bSJed Brown 1690a96aa3bSJed Brown #define DM_Forest_pforest _append_pforest(DM_Forest) 1700a96aa3bSJed Brown typedef struct { 1710a96aa3bSJed Brown DMFTopology_pforest *topo; 1720a96aa3bSJed Brown p4est_t *forest; 1730a96aa3bSJed Brown p4est_ghost_t *ghost; 1740a96aa3bSJed Brown p4est_lnodes_t *lnodes; 1750a96aa3bSJed Brown PetscBool partition_for_coarsening; 1760a96aa3bSJed Brown PetscBool coarsen_hierarchy; 1770a96aa3bSJed Brown PetscBool labelsFinalized; 1780a96aa3bSJed Brown PetscBool adaptivitySuccess; 1790a96aa3bSJed Brown PetscInt cLocalStart; 1800a96aa3bSJed Brown PetscInt cLocalEnd; 1810a96aa3bSJed Brown DM plex; 1820a96aa3bSJed Brown char *ghostName; 1830a96aa3bSJed Brown PetscSF pointAdaptToSelfSF; 1840a96aa3bSJed Brown PetscSF pointSelfToAdaptSF; 1850a96aa3bSJed Brown PetscInt *pointAdaptToSelfCids; 1860a96aa3bSJed Brown PetscInt *pointSelfToAdaptCids; 1870a96aa3bSJed Brown } DM_Forest_pforest; 1880a96aa3bSJed Brown 1890a96aa3bSJed Brown #define DM_Forest_geometry_pforest _append_pforest(DM_Forest_geometry) 1900a96aa3bSJed Brown typedef struct { 1910a96aa3bSJed Brown DM base; 1920a96aa3bSJed Brown PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void*); 1930a96aa3bSJed Brown void *mapCtx; 1940a96aa3bSJed Brown PetscInt coordDim; 1950a96aa3bSJed Brown p4est_geometry_t *inner; 1960a96aa3bSJed Brown } 1970a96aa3bSJed Brown DM_Forest_geometry_pforest; 1980a96aa3bSJed Brown 1990a96aa3bSJed Brown #define GeometryMapping_pforest _append_pforest(GeometryMapping) 2000a96aa3bSJed Brown static void GeometryMapping_pforest(p4est_geometry_t *geom, p4est_topidx_t which_tree, const double abc[3], double xyz[3]) 2010a96aa3bSJed Brown { 2020a96aa3bSJed Brown DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest*)geom->user; 2030a96aa3bSJed Brown PetscReal PetscABC[3] = {0.}; 2040a96aa3bSJed Brown PetscReal PetscXYZ[3] = {0.}; 2050a96aa3bSJed Brown PetscInt i, d = PetscMin(3,geom_pforest->coordDim); 2060a96aa3bSJed Brown double ABC[3]; 2070a96aa3bSJed Brown PetscErrorCode ierr; 2080a96aa3bSJed Brown 2090a96aa3bSJed Brown (geom_pforest->inner->X)(geom_pforest->inner,which_tree,abc,ABC); 2100a96aa3bSJed Brown 2110a96aa3bSJed Brown for (i = 0; i < d; i++) PetscABC[i] = ABC[i]; 2120a96aa3bSJed Brown ierr = (geom_pforest->map)(geom_pforest->base,(PetscInt) which_tree,geom_pforest->coordDim,PetscABC,PetscXYZ,geom_pforest->mapCtx);PETSC_P4EST_ASSERT(!ierr); 2130a96aa3bSJed Brown for (i = 0; i < d; i++) xyz[i] = PetscXYZ[i]; 2140a96aa3bSJed Brown } 2150a96aa3bSJed Brown 2160a96aa3bSJed Brown #define GeometryDestroy_pforest _append_pforest(GeometryDestroy) 2170a96aa3bSJed Brown static void GeometryDestroy_pforest(p4est_geometry_t *geom) 2180a96aa3bSJed Brown { 2190a96aa3bSJed Brown DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest*)geom->user; 2200a96aa3bSJed Brown PetscErrorCode ierr; 2210a96aa3bSJed Brown 2220a96aa3bSJed Brown p4est_geometry_destroy(geom_pforest->inner); 2230a96aa3bSJed Brown ierr = PetscFree(geom->user);PETSC_P4EST_ASSERT(!ierr); 2240a96aa3bSJed Brown ierr = PetscFree(geom);PETSC_P4EST_ASSERT(!ierr); 2250a96aa3bSJed Brown } 2260a96aa3bSJed Brown 2270a96aa3bSJed Brown #define DMFTopologyDestroy_pforest _append_pforest(DMFTopologyDestroy) 2280a96aa3bSJed Brown static PetscErrorCode DMFTopologyDestroy_pforest(DMFTopology_pforest **topo) 2290a96aa3bSJed Brown { 2300a96aa3bSJed Brown PetscFunctionBegin; 2310a96aa3bSJed Brown if (!(*topo)) PetscFunctionReturn(0); 2320a96aa3bSJed Brown if (--((*topo)->refct) > 0) { 2330a96aa3bSJed Brown *topo = NULL; 2340a96aa3bSJed Brown PetscFunctionReturn(0); 2350a96aa3bSJed Brown } 2360a96aa3bSJed Brown if ((*topo)->geom) PetscStackCallP4est(p4est_geometry_destroy,((*topo)->geom)); 2370a96aa3bSJed Brown PetscStackCallP4est(p4est_connectivity_destroy,((*topo)->conn)); 2389566063dSJacob Faibussowitsch PetscCall(PetscFree((*topo)->tree_face_to_uniq)); 2399566063dSJacob Faibussowitsch PetscCall(PetscFree(*topo)); 2400a96aa3bSJed Brown *topo = NULL; 2410a96aa3bSJed Brown PetscFunctionReturn(0); 2420a96aa3bSJed Brown } 2430a96aa3bSJed Brown 2440a96aa3bSJed Brown static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t*,PetscInt**); 2450a96aa3bSJed Brown 2460a96aa3bSJed Brown #define DMFTopologyCreateBrick_pforest _append_pforest(DMFTopologyCreateBrick) 2470a96aa3bSJed Brown static PetscErrorCode DMFTopologyCreateBrick_pforest(DM dm,PetscInt N[], PetscInt P[], PetscReal B[],DMFTopology_pforest **topo, PetscBool useMorton) 2480a96aa3bSJed Brown { 2490a96aa3bSJed Brown double *vertices; 2500a96aa3bSJed Brown PetscInt i, numVerts; 2510a96aa3bSJed Brown 2520a96aa3bSJed Brown PetscFunctionBegin; 25328b400f6SJacob Faibussowitsch PetscCheck(useMorton,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Lexicographic ordering not implemented yet"); 2549566063dSJacob Faibussowitsch PetscCall(PetscNewLog(dm,topo)); 2550a96aa3bSJed Brown 2560a96aa3bSJed Brown (*topo)->refct = 1; 2570a96aa3bSJed Brown #if !defined(P4_TO_P8) 2580a96aa3bSJed Brown PetscStackCallP4estReturn((*topo)->conn,p4est_connectivity_new_brick,((int) N[0], (int) N[1], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1)); 2590a96aa3bSJed Brown #else 2600a96aa3bSJed Brown PetscStackCallP4estReturn((*topo)->conn,p8est_connectivity_new_brick,((int) N[0], (int) N[1], (int) N[2], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1, (P[2] == DM_BOUNDARY_NONE) ? 0 : 1)); 2610a96aa3bSJed Brown #endif 2620a96aa3bSJed Brown numVerts = (*topo)->conn->num_vertices; 2630a96aa3bSJed Brown vertices = (*topo)->conn->vertices; 2640a96aa3bSJed Brown for (i = 0; i < 3 * numVerts; i++) { 2650a96aa3bSJed Brown PetscInt j = i % 3; 2660a96aa3bSJed Brown 2670a96aa3bSJed Brown vertices[i] = B[2 * j] + (vertices[i]/N[j]) * (B[2 * j + 1] - B[2 * j]); 2680a96aa3bSJed Brown } 2690a96aa3bSJed Brown (*topo)->geom = NULL; 2709566063dSJacob Faibussowitsch PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn,&(*topo)->tree_face_to_uniq)); 2710a96aa3bSJed Brown PetscFunctionReturn(0); 2720a96aa3bSJed Brown } 2730a96aa3bSJed Brown 2740a96aa3bSJed Brown #define DMFTopologyCreate_pforest _append_pforest(DMFTopologyCreate) 2750a96aa3bSJed Brown static PetscErrorCode DMFTopologyCreate_pforest(DM dm, DMForestTopology topologyName, DMFTopology_pforest **topo) 2760a96aa3bSJed Brown { 2770a96aa3bSJed Brown const char *name = (const char*) topologyName; 2780a96aa3bSJed Brown const char *prefix; 2790a96aa3bSJed Brown PetscBool isBrick, isShell, isSphere, isMoebius; 2800a96aa3bSJed Brown 2810a96aa3bSJed Brown PetscFunctionBegin; 2820a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2830a96aa3bSJed Brown PetscValidCharPointer(name,2); 2840a96aa3bSJed Brown PetscValidPointer(topo,3); 2859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"brick",&isBrick)); 2869566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"shell",&isShell)); 2879566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"sphere",&isSphere)); 2889566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"moebius",&isMoebius)); 2899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm,&prefix)); 2900a96aa3bSJed Brown if (isBrick) { 2910a96aa3bSJed Brown PetscBool flgN, flgP, flgM, flgB, useMorton = PETSC_TRUE, periodic = PETSC_FALSE; 2920a96aa3bSJed Brown PetscInt N[3] = {2,2,2}, P[3] = {0,0,0}, nretN = P4EST_DIM, nretP = P4EST_DIM, nretB = 2 * P4EST_DIM, i; 2930a96aa3bSJed Brown PetscReal B[6] = {0.0,1.0,0.0,1.0,0.0,1.0}; 2940a96aa3bSJed Brown 2950a96aa3bSJed Brown if (dm->setfromoptionscalled) { 2969566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options,prefix,"-dm_p4est_brick_size",N,&nretN,&flgN)); 2979566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options,prefix,"-dm_p4est_brick_periodicity",P,&nretP,&flgP)); 2989566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetRealArray(((PetscObject)dm)->options,prefix,"-dm_p4est_brick_bounds",B,&nretB,&flgB)); 2999566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options,prefix,"-dm_p4est_brick_use_morton_curve",&useMorton,&flgM)); 3001dca8a05SBarry Smith PetscCheck(!flgN || nretN == P4EST_DIM,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_SIZ,"Need to give %d sizes in -dm_p4est_brick_size, gave %" PetscInt_FMT,P4EST_DIM,nretN); 3011dca8a05SBarry Smith PetscCheck(!flgP || nretP == P4EST_DIM,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_SIZ,"Need to give %d periodicities in -dm_p4est_brick_periodicity, gave %" PetscInt_FMT,P4EST_DIM,nretP); 3021dca8a05SBarry Smith PetscCheck(!flgB || nretB == 2 * P4EST_DIM,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_SIZ,"Need to give %d bounds in -dm_p4est_brick_bounds, gave %" PetscInt_FMT,P4EST_DIM,nretP); 3030a96aa3bSJed Brown } 3040a96aa3bSJed Brown for (i = 0; i < P4EST_DIM; i++) { 3050a96aa3bSJed Brown P[i] = (P[i] ? DM_BOUNDARY_PERIODIC : DM_BOUNDARY_NONE); 3060a96aa3bSJed Brown periodic = (PetscBool)(P[i] || periodic); 3070a96aa3bSJed Brown if (!flgB) B[2 * i + 1] = N[i]; 3080a96aa3bSJed Brown } 3099566063dSJacob Faibussowitsch PetscCall(DMFTopologyCreateBrick_pforest(dm,N,P,B,topo,useMorton)); 3100a96aa3bSJed Brown /* the maxCell trick is not robust enough, localize on all cells if periodic */ 3119566063dSJacob Faibussowitsch PetscCall(DMSetPeriodicity(dm,periodic,NULL,NULL,NULL)); 3120a96aa3bSJed Brown } else { 3139566063dSJacob Faibussowitsch PetscCall(PetscNewLog(dm,topo)); 3140a96aa3bSJed Brown 3150a96aa3bSJed Brown (*topo)->refct = 1; 3160a96aa3bSJed Brown PetscStackCallP4estReturn((*topo)->conn,p4est_connectivity_new_byname,(name)); 3170a96aa3bSJed Brown (*topo)->geom = NULL; 318*1baa6e33SBarry Smith if (isMoebius) PetscCall(DMSetCoordinateDim(dm,3)); 3190a96aa3bSJed Brown #if defined(P4_TO_P8) 3200a96aa3bSJed Brown if (isShell) { 3210a96aa3bSJed Brown PetscReal R2 = 1., R1 = .55; 3220a96aa3bSJed Brown 3230a96aa3bSJed Brown if (dm->setfromoptionscalled) { 3249566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_shell_outer_radius",&R2,NULL)); 3259566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_shell_inner_radius",&R1,NULL)); 3260a96aa3bSJed Brown } 3270a96aa3bSJed Brown PetscStackCallP4estReturn((*topo)->geom,p8est_geometry_new_shell,((*topo)->conn,R2,R1)); 3280a96aa3bSJed Brown } else if (isSphere) { 3290a96aa3bSJed Brown PetscReal R2 = 1., R1 = 0.191728, R0 = 0.039856; 3300a96aa3bSJed Brown 3310a96aa3bSJed Brown if (dm->setfromoptionscalled) { 3329566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_sphere_outer_radius",&R2,NULL)); 3339566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_sphere_inner_radius",&R1,NULL)); 3349566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_sphere_core_radius",&R0,NULL)); 3350a96aa3bSJed Brown } 3360a96aa3bSJed Brown PetscStackCallP4estReturn((*topo)->geom,p8est_geometry_new_sphere,((*topo)->conn,R2,R1,R0)); 3370a96aa3bSJed Brown } 3380a96aa3bSJed Brown #endif 3399566063dSJacob Faibussowitsch PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn,&(*topo)->tree_face_to_uniq)); 3400a96aa3bSJed Brown } 3410a96aa3bSJed Brown PetscFunctionReturn(0); 3420a96aa3bSJed Brown } 3430a96aa3bSJed Brown 3440a96aa3bSJed Brown #define DMConvert_plex_pforest _append_pforest(DMConvert_plex) 3450a96aa3bSJed Brown static PetscErrorCode DMConvert_plex_pforest(DM dm, DMType newtype, DM *pforest) 3460a96aa3bSJed Brown { 3470a96aa3bSJed Brown MPI_Comm comm; 3480a96aa3bSJed Brown PetscBool isPlex; 3490a96aa3bSJed Brown PetscInt dim; 3500a96aa3bSJed Brown void *ctx; 3510a96aa3bSJed Brown 3520a96aa3bSJed Brown PetscFunctionBegin; 3530a96aa3bSJed Brown 3540a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3550a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)dm); 3569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm,DMPLEX,&isPlex)); 35728b400f6SJacob Faibussowitsch PetscCheck(isPlex,comm,PETSC_ERR_ARG_WRONG,"Expected DM type %s, got %s",DMPLEX,((PetscObject)dm)->type_name); 3589566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm,&dim)); 35963a3b9bcSJacob Faibussowitsch PetscCheck(dim == P4EST_DIM,comm,PETSC_ERR_ARG_WRONG,"Expected DM dimension %d, got %" PetscInt_FMT,P4EST_DIM,dim); 3609566063dSJacob Faibussowitsch PetscCall(DMCreate(comm,pforest)); 3619566063dSJacob Faibussowitsch PetscCall(DMSetType(*pforest,DMPFOREST)); 3629566063dSJacob Faibussowitsch PetscCall(DMForestSetBaseDM(*pforest,dm)); 3639566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm,&ctx)); 3649566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*pforest,ctx)); 3659566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm,*pforest)); 3660a96aa3bSJed Brown PetscFunctionReturn(0); 3670a96aa3bSJed Brown } 3680a96aa3bSJed Brown 3690a96aa3bSJed Brown #define DMForestDestroy_pforest _append_pforest(DMForestDestroy) 3700a96aa3bSJed Brown static PetscErrorCode DMForestDestroy_pforest(DM dm) 3710a96aa3bSJed Brown { 3720a96aa3bSJed Brown DM_Forest *forest = (DM_Forest*) dm->data; 3730a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data; 3740a96aa3bSJed Brown 3750a96aa3bSJed Brown PetscFunctionBegin; 3760a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3770a96aa3bSJed Brown if (pforest->lnodes) PetscStackCallP4est(p4est_lnodes_destroy,(pforest->lnodes)); 3780a96aa3bSJed Brown pforest->lnodes = NULL; 3790a96aa3bSJed Brown if (pforest->ghost) PetscStackCallP4est(p4est_ghost_destroy,(pforest->ghost)); 3800a96aa3bSJed Brown pforest->ghost = NULL; 3810a96aa3bSJed Brown if (pforest->forest) PetscStackCallP4est(p4est_destroy,(pforest->forest)); 3820a96aa3bSJed Brown pforest->forest = NULL; 3839566063dSJacob Faibussowitsch PetscCall(DMFTopologyDestroy_pforest(&pforest->topo)); 3849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,PetscStringize(DMConvert_plex_pforest) "_C",NULL)); 3859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,PetscStringize(DMConvert_pforest_plex) "_C",NULL)); 3862e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMSetUpGLVisViewer_C",NULL)); 3879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMCreateNeumannOverlap_C",NULL)); 3882e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexGetOverlap_C",NULL)); 3892e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)dm,"MatComputeNeumannOverlap_C",NULL)); 3909566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->ghostName)); 3919566063dSJacob Faibussowitsch PetscCall(DMDestroy(&pforest->plex)); 3929566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pforest->pointAdaptToSelfSF)); 3939566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pforest->pointSelfToAdaptSF)); 3949566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointAdaptToSelfCids)); 3959566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointSelfToAdaptCids)); 3969566063dSJacob Faibussowitsch PetscCall(PetscFree(forest->data)); 3970a96aa3bSJed Brown PetscFunctionReturn(0); 3980a96aa3bSJed Brown } 3990a96aa3bSJed Brown 4000a96aa3bSJed Brown #define DMForestTemplate_pforest _append_pforest(DMForestTemplate) 4010a96aa3bSJed Brown static PetscErrorCode DMForestTemplate_pforest(DM dm, DM tdm) 4020a96aa3bSJed Brown { 4030a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data; 4040a96aa3bSJed Brown DM_Forest_pforest *tpforest = (DM_Forest_pforest*) ((DM_Forest*) tdm->data)->data; 4050a96aa3bSJed Brown 4060a96aa3bSJed Brown PetscFunctionBegin; 4070a96aa3bSJed Brown if (pforest->topo) pforest->topo->refct++; 4089566063dSJacob Faibussowitsch PetscCall(DMFTopologyDestroy_pforest(&(tpforest->topo))); 4090a96aa3bSJed Brown tpforest->topo = pforest->topo; 4100a96aa3bSJed Brown PetscFunctionReturn(0); 4110a96aa3bSJed Brown } 4120a96aa3bSJed Brown 4130a96aa3bSJed Brown #define DMPlexCreateConnectivity_pforest _append_pforest(DMPlexCreateConnectivity) 4140a96aa3bSJed Brown static PetscErrorCode DMPlexCreateConnectivity_pforest(DM,p4est_connectivity_t**,PetscInt**); 4150a96aa3bSJed Brown 4160a96aa3bSJed Brown typedef struct _PforestAdaptCtx 4170a96aa3bSJed Brown { 4180a96aa3bSJed Brown PetscInt maxLevel; 4190a96aa3bSJed Brown PetscInt minLevel; 4200a96aa3bSJed Brown PetscInt currLevel; 4210a96aa3bSJed Brown PetscBool anyChange; 4220a96aa3bSJed Brown } 4230a96aa3bSJed Brown PforestAdaptCtx; 4240a96aa3bSJed Brown 4250a96aa3bSJed Brown static int pforest_coarsen_currlevel(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 4260a96aa3bSJed Brown { 4270a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx*) p4est->user_pointer; 4280a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4290a96aa3bSJed Brown PetscInt currLevel = ctx->currLevel; 4300a96aa3bSJed Brown 4310a96aa3bSJed Brown if (quadrants[0]->level <= minLevel) return 0; 4320a96aa3bSJed Brown return (int) ((PetscInt) quadrants[0]->level == currLevel); 4330a96aa3bSJed Brown } 4340a96aa3bSJed Brown 4350a96aa3bSJed Brown static int pforest_coarsen_uniform(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 4360a96aa3bSJed Brown { 4370a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx*) p4est->user_pointer; 4380a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4390a96aa3bSJed Brown 4400a96aa3bSJed Brown return (int) ((PetscInt) quadrants[0]->level > minLevel); 4410a96aa3bSJed Brown } 4420a96aa3bSJed Brown 4430a96aa3bSJed Brown static int pforest_coarsen_flag_any(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 4440a96aa3bSJed Brown { 4450a96aa3bSJed Brown PetscInt i; 4460a96aa3bSJed Brown PetscBool any = PETSC_FALSE; 4470a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx*) p4est->user_pointer; 4480a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4490a96aa3bSJed Brown 4500a96aa3bSJed Brown if (quadrants[0]->level <= minLevel) return 0; 4510a96aa3bSJed Brown for (i = 0; i < P4EST_CHILDREN; i++) { 4520a96aa3bSJed Brown if (quadrants[i]->p.user_int == DM_ADAPT_KEEP) { 4530a96aa3bSJed Brown any = PETSC_FALSE; 4540a96aa3bSJed Brown break; 4550a96aa3bSJed Brown } 4560a96aa3bSJed Brown if (quadrants[i]->p.user_int == DM_ADAPT_COARSEN) { 4570a96aa3bSJed Brown any = PETSC_TRUE; 4580a96aa3bSJed Brown break; 4590a96aa3bSJed Brown } 4600a96aa3bSJed Brown } 4610a96aa3bSJed Brown return any ? 1 : 0; 4620a96aa3bSJed Brown } 4630a96aa3bSJed Brown 4640a96aa3bSJed Brown static int pforest_coarsen_flag_all(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 4650a96aa3bSJed Brown { 4660a96aa3bSJed Brown PetscInt i; 4670a96aa3bSJed Brown PetscBool all = PETSC_TRUE; 4680a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx*) p4est->user_pointer; 4690a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4700a96aa3bSJed Brown 4710a96aa3bSJed Brown if (quadrants[0]->level <= minLevel) return 0; 4720a96aa3bSJed Brown for (i = 0; i < P4EST_CHILDREN; i++) { 4730a96aa3bSJed Brown if (quadrants[i]->p.user_int != DM_ADAPT_COARSEN) { 4740a96aa3bSJed Brown all = PETSC_FALSE; 4750a96aa3bSJed Brown break; 4760a96aa3bSJed Brown } 4770a96aa3bSJed Brown } 4780a96aa3bSJed Brown return all ? 1 : 0; 4790a96aa3bSJed Brown } 4800a96aa3bSJed Brown 4810a96aa3bSJed Brown static void pforest_init_determine(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 4820a96aa3bSJed Brown { 4830a96aa3bSJed Brown quadrant->p.user_int = DM_ADAPT_DETERMINE; 4840a96aa3bSJed Brown } 4850a96aa3bSJed Brown 4860a96aa3bSJed Brown static int pforest_refine_uniform(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 4870a96aa3bSJed Brown { 4880a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx*) p4est->user_pointer; 4890a96aa3bSJed Brown PetscInt maxLevel = ctx->maxLevel; 4900a96aa3bSJed Brown 4910a96aa3bSJed Brown return ((PetscInt) quadrant->level < maxLevel); 4920a96aa3bSJed Brown } 4930a96aa3bSJed Brown 4940a96aa3bSJed Brown static int pforest_refine_flag(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 4950a96aa3bSJed Brown { 4960a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx*) p4est->user_pointer; 4970a96aa3bSJed Brown PetscInt maxLevel = ctx->maxLevel; 4980a96aa3bSJed Brown 4990a96aa3bSJed Brown if ((PetscInt) quadrant->level >= maxLevel) return 0; 5000a96aa3bSJed Brown 5010a96aa3bSJed Brown return (quadrant->p.user_int == DM_ADAPT_REFINE); 5020a96aa3bSJed Brown } 5030a96aa3bSJed Brown 5040a96aa3bSJed Brown static PetscErrorCode DMPforestComputeLocalCellTransferSF_loop(p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, p4est_topidx_t flt, p4est_topidx_t llt, PetscInt *toFineLeavesCount, PetscInt *toLeaves, PetscSFNode *fromRoots, PetscInt *fromFineLeavesCount, PetscInt *fromLeaves, PetscSFNode *toRoots) 5050a96aa3bSJed Brown { 5060a96aa3bSJed Brown PetscMPIInt rank = p4estFrom->mpirank; 5070a96aa3bSJed Brown p4est_topidx_t t; 5080a96aa3bSJed Brown PetscInt toFineLeaves = 0, fromFineLeaves = 0; 5090a96aa3bSJed Brown 5100a96aa3bSJed Brown PetscFunctionBegin; 5110a96aa3bSJed Brown for (t = flt; t <= llt; t++) { /* count roots and leaves */ 5120a96aa3bSJed Brown p4est_tree_t *treeFrom = &(((p4est_tree_t*) p4estFrom->trees->array)[t]); 5130a96aa3bSJed Brown p4est_tree_t *treeTo = &(((p4est_tree_t*) p4estTo->trees->array)[t]); 5140a96aa3bSJed Brown p4est_quadrant_t *firstFrom = &treeFrom->first_desc; 5150a96aa3bSJed Brown p4est_quadrant_t *firstTo = &treeTo->first_desc; 5160a96aa3bSJed Brown PetscInt numFrom = (PetscInt) treeFrom->quadrants.elem_count; 5170a96aa3bSJed Brown PetscInt numTo = (PetscInt) treeTo->quadrants.elem_count; 5180a96aa3bSJed Brown p4est_quadrant_t *quadsFrom = (p4est_quadrant_t*) treeFrom->quadrants.array; 5190a96aa3bSJed Brown p4est_quadrant_t *quadsTo = (p4est_quadrant_t*) treeTo->quadrants.array; 5200a96aa3bSJed Brown PetscInt currentFrom, currentTo; 5210a96aa3bSJed Brown PetscInt treeOffsetFrom = (PetscInt) treeFrom->quadrants_offset; 5220a96aa3bSJed Brown PetscInt treeOffsetTo = (PetscInt) treeTo->quadrants_offset; 5230a96aa3bSJed Brown int comp; 5240a96aa3bSJed Brown 5250a96aa3bSJed Brown PetscStackCallP4estReturn(comp,p4est_quadrant_is_equal,(firstFrom,firstTo)); 52628b400f6SJacob Faibussowitsch PetscCheck(comp,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"non-matching partitions"); 5270a96aa3bSJed Brown 5280a96aa3bSJed Brown for (currentFrom = 0, currentTo = 0; currentFrom < numFrom && currentTo < numTo;) { 5290a96aa3bSJed Brown p4est_quadrant_t *quadFrom = &quadsFrom[currentFrom]; 5300a96aa3bSJed Brown p4est_quadrant_t *quadTo = &quadsTo[currentTo]; 5310a96aa3bSJed Brown 5320a96aa3bSJed Brown if (quadFrom->level == quadTo->level) { 5330a96aa3bSJed Brown if (toLeaves) { 5340a96aa3bSJed Brown toLeaves[toFineLeaves] = currentTo + treeOffsetTo + ToOffset; 5350a96aa3bSJed Brown fromRoots[toFineLeaves].rank = rank; 5360a96aa3bSJed Brown fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset; 5370a96aa3bSJed Brown } 5380a96aa3bSJed Brown toFineLeaves++; 5390a96aa3bSJed Brown currentFrom++; 5400a96aa3bSJed Brown currentTo++; 5410a96aa3bSJed Brown } else { 5420a96aa3bSJed Brown int fromIsAncestor; 5430a96aa3bSJed Brown 5440a96aa3bSJed Brown PetscStackCallP4estReturn(fromIsAncestor,p4est_quadrant_is_ancestor,(quadFrom,quadTo)); 5450a96aa3bSJed Brown if (fromIsAncestor) { 5460a96aa3bSJed Brown p4est_quadrant_t lastDesc; 5470a96aa3bSJed Brown 5480a96aa3bSJed Brown if (toLeaves) { 5490a96aa3bSJed Brown toLeaves[toFineLeaves] = currentTo + treeOffsetTo + ToOffset; 5500a96aa3bSJed Brown fromRoots[toFineLeaves].rank = rank; 5510a96aa3bSJed Brown fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset; 5520a96aa3bSJed Brown } 5530a96aa3bSJed Brown toFineLeaves++; 5540a96aa3bSJed Brown currentTo++; 5550a96aa3bSJed Brown PetscStackCallP4est(p4est_quadrant_last_descendant,(quadFrom,&lastDesc,quadTo->level)); 5560a96aa3bSJed Brown PetscStackCallP4estReturn(comp,p4est_quadrant_is_equal,(quadTo,&lastDesc)); 5570a96aa3bSJed Brown if (comp) currentFrom++; 5580a96aa3bSJed Brown } else { 5590a96aa3bSJed Brown p4est_quadrant_t lastDesc; 5600a96aa3bSJed Brown 5610a96aa3bSJed Brown if (fromLeaves) { 5620a96aa3bSJed Brown fromLeaves[fromFineLeaves] = currentFrom + treeOffsetFrom + FromOffset; 5630a96aa3bSJed Brown toRoots[fromFineLeaves].rank = rank; 5640a96aa3bSJed Brown toRoots[fromFineLeaves].index = currentTo + treeOffsetTo + ToOffset; 5650a96aa3bSJed Brown } 5660a96aa3bSJed Brown fromFineLeaves++; 5670a96aa3bSJed Brown currentFrom++; 5680a96aa3bSJed Brown PetscStackCallP4est(p4est_quadrant_last_descendant,(quadTo,&lastDesc,quadFrom->level)); 5690a96aa3bSJed Brown PetscStackCallP4estReturn(comp,p4est_quadrant_is_equal,(quadFrom,&lastDesc)); 5700a96aa3bSJed Brown if (comp) currentTo++; 5710a96aa3bSJed Brown } 5720a96aa3bSJed Brown } 5730a96aa3bSJed Brown } 5740a96aa3bSJed Brown } 5750a96aa3bSJed Brown *toFineLeavesCount = toFineLeaves; 5760a96aa3bSJed Brown *fromFineLeavesCount = fromFineLeaves; 5770a96aa3bSJed Brown PetscFunctionReturn(0); 5780a96aa3bSJed Brown } 5790a96aa3bSJed Brown 5800a96aa3bSJed Brown /* Compute the maximum level across all the trees */ 5810a96aa3bSJed Brown static PetscErrorCode DMPforestGetRefinementLevel(DM dm, PetscInt *lev) 5820a96aa3bSJed Brown { 5830a96aa3bSJed Brown p4est_topidx_t t, flt, llt; 5840a96aa3bSJed Brown DM_Forest *forest = (DM_Forest*) dm->data; 5850a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data; 5860a96aa3bSJed Brown PetscInt maxlevelloc = 0; 5870a96aa3bSJed Brown p4est_t *p4est; 5880a96aa3bSJed Brown 5890a96aa3bSJed Brown PetscFunctionBegin; 59028b400f6SJacob Faibussowitsch PetscCheck(pforest,PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing DM_Forest_pforest"); 59128b400f6SJacob Faibussowitsch PetscCheck(pforest->forest,PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing p4est_t"); 5920a96aa3bSJed Brown p4est = pforest->forest; 5930a96aa3bSJed Brown flt = p4est->first_local_tree; 5940a96aa3bSJed Brown llt = p4est->last_local_tree; 5950a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 5960a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t*) p4est->trees->array)[t]); 5970a96aa3bSJed Brown maxlevelloc = PetscMax((PetscInt)tree->maxlevel,maxlevelloc); 5980a96aa3bSJed Brown } 5991c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&maxlevelloc,lev,1,MPIU_INT,MPI_MAX,PetscObjectComm((PetscObject)dm))); 6000a96aa3bSJed Brown PetscFunctionReturn(0); 6010a96aa3bSJed Brown } 6020a96aa3bSJed Brown 6030a96aa3bSJed Brown /* Puts identity in coarseToFine */ 6040a96aa3bSJed Brown /* assumes a matching partition */ 6050a96aa3bSJed Brown static PetscErrorCode DMPforestComputeLocalCellTransferSF(MPI_Comm comm, p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, PetscSF *fromCoarseToFine, PetscSF *toCoarseFromFine) 6060a96aa3bSJed Brown { 6070a96aa3bSJed Brown p4est_topidx_t flt, llt; 6080a96aa3bSJed Brown PetscSF fromCoarse, toCoarse; 6090a96aa3bSJed Brown PetscInt numRootsFrom, numRootsTo, numLeavesFrom, numLeavesTo; 6100a96aa3bSJed Brown PetscInt *fromLeaves = NULL, *toLeaves = NULL; 6110a96aa3bSJed Brown PetscSFNode *fromRoots = NULL, *toRoots = NULL; 6120a96aa3bSJed Brown 6130a96aa3bSJed Brown PetscFunctionBegin; 6140a96aa3bSJed Brown flt = p4estFrom->first_local_tree; 6150a96aa3bSJed Brown llt = p4estFrom->last_local_tree; 6169566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,&fromCoarse)); 6170a96aa3bSJed Brown if (toCoarseFromFine) { 6189566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,&toCoarse)); 6190a96aa3bSJed Brown } 6200a96aa3bSJed Brown numRootsFrom = p4estFrom->local_num_quadrants + FromOffset; 6210a96aa3bSJed Brown numRootsTo = p4estTo->local_num_quadrants + ToOffset; 6229566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom,FromOffset,p4estTo,ToOffset,flt,llt,&numLeavesTo,NULL,NULL,&numLeavesFrom,NULL,NULL)); 6239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesTo,&toLeaves)); 6249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesTo,&fromRoots)); 6250a96aa3bSJed Brown if (toCoarseFromFine) { 6269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesFrom,&fromLeaves)); 6279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesFrom,&fromRoots)); 6280a96aa3bSJed Brown } 6299566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom,FromOffset,p4estTo,ToOffset,flt,llt,&numLeavesTo,toLeaves,fromRoots,&numLeavesFrom,fromLeaves,toRoots)); 6300a96aa3bSJed Brown if (!ToOffset && (numLeavesTo == numRootsTo)) { /* compress */ 6319566063dSJacob Faibussowitsch PetscCall(PetscFree(toLeaves)); 6329566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(fromCoarse,numRootsFrom,numLeavesTo,NULL,PETSC_OWN_POINTER,fromRoots,PETSC_OWN_POINTER)); 633*1baa6e33SBarry Smith } else PetscCall(PetscSFSetGraph(fromCoarse,numRootsFrom,numLeavesTo,toLeaves,PETSC_OWN_POINTER,fromRoots,PETSC_OWN_POINTER)); 6340a96aa3bSJed Brown *fromCoarseToFine = fromCoarse; 6350a96aa3bSJed Brown if (toCoarseFromFine) { 6369566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(toCoarse,numRootsTo,numLeavesFrom,fromLeaves,PETSC_OWN_POINTER,toRoots,PETSC_OWN_POINTER)); 6370a96aa3bSJed Brown *toCoarseFromFine = toCoarse; 6380a96aa3bSJed Brown } 6390a96aa3bSJed Brown PetscFunctionReturn(0); 6400a96aa3bSJed Brown } 6410a96aa3bSJed Brown 6420a96aa3bSJed Brown /* range of processes whose B sections overlap this ranks A section */ 6430a96aa3bSJed Brown static PetscErrorCode DMPforestComputeOverlappingRanks(PetscMPIInt size, PetscMPIInt rank, p4est_t *p4estA, p4est_t *p4estB, PetscInt *startB, PetscInt *endB) 6440a96aa3bSJed Brown { 6450a96aa3bSJed Brown p4est_quadrant_t * myCoarseStart = &(p4estA->global_first_position[rank]); 6460a96aa3bSJed Brown p4est_quadrant_t * myCoarseEnd = &(p4estA->global_first_position[rank+1]); 6470a96aa3bSJed Brown p4est_quadrant_t * globalFirstB = p4estB->global_first_position; 6480a96aa3bSJed Brown 6490a96aa3bSJed Brown PetscFunctionBegin; 6500a96aa3bSJed Brown *startB = -1; 6510a96aa3bSJed Brown *endB = -1; 6520a96aa3bSJed Brown if (p4estA->local_num_quadrants) { 6530a96aa3bSJed Brown PetscInt lo, hi, guess; 6540a96aa3bSJed Brown /* binary search to find interval containing myCoarseStart */ 6550a96aa3bSJed Brown lo = 0; 6560a96aa3bSJed Brown hi = size; 6570a96aa3bSJed Brown guess = rank; 6580a96aa3bSJed Brown while (1) { 6590a96aa3bSJed Brown int startCompMy, myCompEnd; 6600a96aa3bSJed Brown 6610a96aa3bSJed Brown PetscStackCallP4estReturn(startCompMy,p4est_quadrant_compare_piggy,(&globalFirstB[guess],myCoarseStart)); 6620a96aa3bSJed Brown PetscStackCallP4estReturn(myCompEnd,p4est_quadrant_compare_piggy,(myCoarseStart,&globalFirstB[guess+1])); 6630a96aa3bSJed Brown if (startCompMy <= 0 && myCompEnd < 0) { 6640a96aa3bSJed Brown *startB = guess; 6650a96aa3bSJed Brown break; 6660a96aa3bSJed Brown } else if (startCompMy > 0) { /* guess is to high */ 6670a96aa3bSJed Brown hi = guess; 6680a96aa3bSJed Brown } else { /* guess is to low */ 6690a96aa3bSJed Brown lo = guess + 1; 6700a96aa3bSJed Brown } 6710a96aa3bSJed Brown guess = lo + (hi - lo) / 2; 6720a96aa3bSJed Brown } 6730a96aa3bSJed Brown /* reset bounds, but not guess */ 6740a96aa3bSJed Brown lo = 0; 6750a96aa3bSJed Brown hi = size; 6760a96aa3bSJed Brown while (1) { 6770a96aa3bSJed Brown int startCompMy, myCompEnd; 6780a96aa3bSJed Brown 6790a96aa3bSJed Brown PetscStackCallP4estReturn(startCompMy,p4est_quadrant_compare_piggy,(&globalFirstB[guess],myCoarseEnd)); 6800a96aa3bSJed Brown PetscStackCallP4estReturn(myCompEnd,p4est_quadrant_compare_piggy,(myCoarseEnd,&globalFirstB[guess+1])); 6810a96aa3bSJed Brown if (startCompMy < 0 && myCompEnd <= 0) { /* notice that the comparison operators are different from above */ 6820a96aa3bSJed Brown *endB = guess + 1; 6830a96aa3bSJed Brown break; 6840a96aa3bSJed Brown } else if (startCompMy >= 0) { /* guess is to high */ 6850a96aa3bSJed Brown hi = guess; 6860a96aa3bSJed Brown } else { /* guess is to low */ 6870a96aa3bSJed Brown lo = guess + 1; 6880a96aa3bSJed Brown } 6890a96aa3bSJed Brown guess = lo + (hi - lo) / 2; 6900a96aa3bSJed Brown } 6910a96aa3bSJed Brown } 6920a96aa3bSJed Brown PetscFunctionReturn(0); 6930a96aa3bSJed Brown } 6940a96aa3bSJed Brown 6950a96aa3bSJed Brown static PetscErrorCode DMPforestGetPlex(DM,DM*); 6960a96aa3bSJed Brown 6970a96aa3bSJed Brown #define DMSetUp_pforest _append_pforest(DMSetUp) 6980a96aa3bSJed Brown static PetscErrorCode DMSetUp_pforest(DM dm) 6990a96aa3bSJed Brown { 7000a96aa3bSJed Brown DM_Forest *forest = (DM_Forest*) dm->data; 7010a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data; 7020a96aa3bSJed Brown DM base, adaptFrom; 7030a96aa3bSJed Brown DMForestTopology topoName; 7040a96aa3bSJed Brown PetscSF preCoarseToFine = NULL, coarseToPreFine = NULL; 7050a96aa3bSJed Brown PforestAdaptCtx ctx; 7060a96aa3bSJed Brown 7070a96aa3bSJed Brown PetscFunctionBegin; 7080a96aa3bSJed Brown ctx.minLevel = PETSC_MAX_INT; 7090a96aa3bSJed Brown ctx.maxLevel = 0; 7100a96aa3bSJed Brown ctx.currLevel = 0; 7110a96aa3bSJed Brown ctx.anyChange = PETSC_FALSE; 7120a96aa3bSJed Brown /* sanity check */ 7139566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dm,&adaptFrom)); 7149566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm,&base)); 7159566063dSJacob Faibussowitsch PetscCall(DMForestGetTopology(dm,&topoName)); 7161dca8a05SBarry Smith PetscCheck(adaptFrom || base || topoName,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"A forest needs a topology, a base DM, or a DM to adapt from"); 7170a96aa3bSJed Brown 7180a96aa3bSJed Brown /* === Step 1: DMFTopology === */ 7190a96aa3bSJed Brown if (adaptFrom) { /* reference already created topology */ 7200a96aa3bSJed Brown PetscBool ispforest; 7210a96aa3bSJed Brown DM_Forest *aforest = (DM_Forest*) adaptFrom->data; 7220a96aa3bSJed Brown DM_Forest_pforest *apforest = (DM_Forest_pforest*) aforest->data; 7230a96aa3bSJed Brown 7249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)adaptFrom,DMPFOREST,&ispforest)); 72528b400f6SJacob Faibussowitsch PetscCheck(ispforest,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_NOTSAMETYPE,"Trying to adapt from %s, which is not %s",((PetscObject)adaptFrom)->type_name,DMPFOREST); 72628b400f6SJacob Faibussowitsch PetscCheck(apforest->topo,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"The pre-adaptation forest must have a topology"); 7279566063dSJacob Faibussowitsch PetscCall(DMSetUp(adaptFrom)); 7289566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm,&base)); 7299566063dSJacob Faibussowitsch PetscCall(DMForestGetTopology(dm,&topoName)); 7300a96aa3bSJed Brown } else if (base) { /* construct a connectivity from base */ 7310a96aa3bSJed Brown PetscBool isPlex, isDA; 7320a96aa3bSJed Brown 7339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)base,&topoName)); 7349566063dSJacob Faibussowitsch PetscCall(DMForestSetTopology(dm,topoName)); 7359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)base,DMPLEX,&isPlex)); 7369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)base,DMDA,&isDA)); 7370a96aa3bSJed Brown if (isPlex) { 7380a96aa3bSJed Brown MPI_Comm comm = PetscObjectComm((PetscObject)dm); 7390a96aa3bSJed Brown PetscInt depth; 7400a96aa3bSJed Brown PetscMPIInt size; 7410a96aa3bSJed Brown p4est_connectivity_t *conn = NULL; 7420a96aa3bSJed Brown DMFTopology_pforest *topo; 7430a96aa3bSJed Brown PetscInt *tree_face_to_uniq = NULL; 7440a96aa3bSJed Brown 7459566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(base,&depth)); 7460a96aa3bSJed Brown if (depth == 1) { 7470a96aa3bSJed Brown DM connDM; 7480a96aa3bSJed Brown 7499566063dSJacob Faibussowitsch PetscCall(DMPlexInterpolate(base,&connDM)); 7500a96aa3bSJed Brown base = connDM; 7519566063dSJacob Faibussowitsch PetscCall(DMForestSetBaseDM(dm,base)); 7529566063dSJacob Faibussowitsch PetscCall(DMDestroy(&connDM)); 75363a3b9bcSJacob Faibussowitsch } else PetscCheck(depth == P4EST_DIM,comm,PETSC_ERR_ARG_WRONG,"Base plex is neither interpolated nor uninterpolated? depth %" PetscInt_FMT ", expected 2 or %d",depth,P4EST_DIM + 1); 7549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 7550a96aa3bSJed Brown if (size > 1) { 7560a96aa3bSJed Brown DM dmRedundant; 7570a96aa3bSJed Brown PetscSF sf; 7580a96aa3bSJed Brown 7599566063dSJacob Faibussowitsch PetscCall(DMPlexGetRedundantDM(base,&sf,&dmRedundant)); 76028b400f6SJacob Faibussowitsch PetscCheck(dmRedundant,comm,PETSC_ERR_PLIB,"Could not create redundant DM"); 7619566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dmRedundant,"_base_migration_sf",(PetscObject)sf)); 7629566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 7630a96aa3bSJed Brown base = dmRedundant; 7649566063dSJacob Faibussowitsch PetscCall(DMForestSetBaseDM(dm,base)); 7659566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRedundant)); 7660a96aa3bSJed Brown } 7679566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(base,NULL,"-dm_p4est_base_view")); 7689566063dSJacob Faibussowitsch PetscCall(DMPlexCreateConnectivity_pforest(base,&conn,&tree_face_to_uniq)); 7699566063dSJacob Faibussowitsch PetscCall(PetscNewLog(dm,&topo)); 7700a96aa3bSJed Brown topo->refct = 1; 7710a96aa3bSJed Brown topo->conn = conn; 7720a96aa3bSJed Brown topo->geom = NULL; 7730a96aa3bSJed Brown { 7740a96aa3bSJed Brown PetscErrorCode (*map)(DM,PetscInt,PetscInt,const PetscReal[],PetscReal[],void*); 7750a96aa3bSJed Brown void *mapCtx; 7760a96aa3bSJed Brown 7779566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseCoordinateMapping(dm,&map,&mapCtx)); 7780a96aa3bSJed Brown if (map) { 7790a96aa3bSJed Brown DM_Forest_geometry_pforest *geom_pforest; 7800a96aa3bSJed Brown p4est_geometry_t *geom; 7810a96aa3bSJed Brown 7829566063dSJacob Faibussowitsch PetscCall(PetscNew(&geom_pforest)); 7839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm,&geom_pforest->coordDim)); 7840a96aa3bSJed Brown geom_pforest->map = map; 7850a96aa3bSJed Brown geom_pforest->mapCtx = mapCtx; 7860a96aa3bSJed Brown PetscStackCallP4estReturn(geom_pforest->inner,p4est_geometry_new_connectivity,(conn)); 7879566063dSJacob Faibussowitsch PetscCall(PetscNew(&geom)); 7880a96aa3bSJed Brown geom->name = topoName; 7890a96aa3bSJed Brown geom->user = geom_pforest; 7900a96aa3bSJed Brown geom->X = GeometryMapping_pforest; 7910a96aa3bSJed Brown geom->destroy = GeometryDestroy_pforest; 7920a96aa3bSJed Brown topo->geom = geom; 7930a96aa3bSJed Brown } 7940a96aa3bSJed Brown } 7950a96aa3bSJed Brown topo->tree_face_to_uniq = tree_face_to_uniq; 7960a96aa3bSJed Brown pforest->topo = topo; 79728b400f6SJacob Faibussowitsch } else PetscCheck(!isDA,PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Not implemented yet"); 7980a96aa3bSJed Brown #if 0 7990a96aa3bSJed Brown PetscInt N[3], P[3]; 8000a96aa3bSJed Brown 8010a96aa3bSJed Brown /* get the sizes, periodicities */ 8020a96aa3bSJed Brown /* ... */ 8030a96aa3bSJed Brown /* don't use Morton order */ 8049566063dSJacob Faibussowitsch PetscCall(DMFTopologyCreateBrick_pforest(dm,N,P,&pforest->topo,PETSC_FALSE)); 8050a96aa3bSJed Brown #endif 8060a96aa3bSJed Brown { 8070a96aa3bSJed Brown PetscInt numLabels, l; 8080a96aa3bSJed Brown 8099566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(base,&numLabels)); 8100a96aa3bSJed Brown for (l = 0; l < numLabels; l++) { 8110a96aa3bSJed Brown PetscBool isDepth, isGhost, isVTK, isDim, isCellType; 8120a96aa3bSJed Brown DMLabel label, labelNew; 8130a96aa3bSJed Brown PetscInt defVal; 8140a96aa3bSJed Brown const char *name; 8150a96aa3bSJed Brown 8169566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(base, l, &name)); 8179566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(base, l, &label)); 8189566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"depth",&isDepth)); 8190a96aa3bSJed Brown if (isDepth) continue; 8209566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"dim",&isDim)); 8210a96aa3bSJed Brown if (isDim) continue; 8229566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"celltype",&isCellType)); 8230a96aa3bSJed Brown if (isCellType) continue; 8249566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"ghost",&isGhost)); 8250a96aa3bSJed Brown if (isGhost) continue; 8269566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"vtk",&isVTK)); 8270a96aa3bSJed Brown if (isVTK) continue; 8289566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm,name)); 8299566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm,name,&labelNew)); 8309566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label,&defVal)); 8319566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(labelNew,defVal)); 8320a96aa3bSJed Brown } 8330a96aa3bSJed Brown /* map dm points (internal plex) to base 8340a96aa3bSJed Brown we currently create the subpoint_map for the entire hierarchy, starting from the finest forest 8350a96aa3bSJed Brown and propagating back to the coarsest 8360a96aa3bSJed Brown This is not an optimal approach, since we need the map only on the coarsest level 8370a96aa3bSJed Brown during DMForestTransferVecFromBase */ 8389566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm,&l)); 8390a96aa3bSJed Brown if (!l) { 8409566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm,"_forest_base_subpoint_map")); 8410a96aa3bSJed Brown } 8420a96aa3bSJed Brown } 8430a96aa3bSJed Brown } else { /* construct from topology name */ 8440a96aa3bSJed Brown DMFTopology_pforest *topo; 8450a96aa3bSJed Brown 8469566063dSJacob Faibussowitsch PetscCall(DMFTopologyCreate_pforest(dm,topoName,&topo)); 8470a96aa3bSJed Brown pforest->topo = topo; 8480a96aa3bSJed Brown /* TODO: construct base? */ 8490a96aa3bSJed Brown } 8500a96aa3bSJed Brown 8510a96aa3bSJed Brown /* === Step 2: get the leaves of the forest === */ 8520a96aa3bSJed Brown if (adaptFrom) { /* start with the old forest */ 8530a96aa3bSJed Brown DMLabel adaptLabel; 8540a96aa3bSJed Brown PetscInt defaultValue; 8550a96aa3bSJed Brown PetscInt numValues, numValuesGlobal, cLocalStart, count; 8560a96aa3bSJed Brown DM_Forest *aforest = (DM_Forest*) adaptFrom->data; 8570a96aa3bSJed Brown DM_Forest_pforest *apforest = (DM_Forest_pforest*) aforest->data; 8580a96aa3bSJed Brown PetscBool computeAdaptSF; 8590a96aa3bSJed Brown p4est_topidx_t flt, llt, t; 8600a96aa3bSJed Brown 8610a96aa3bSJed Brown flt = apforest->forest->first_local_tree; 8620a96aa3bSJed Brown llt = apforest->forest->last_local_tree; 8630a96aa3bSJed Brown cLocalStart = apforest->cLocalStart; 8649566063dSJacob Faibussowitsch PetscCall(DMForestGetComputeAdaptivitySF(dm,&computeAdaptSF)); 8650a96aa3bSJed Brown PetscStackCallP4estReturn(pforest->forest,p4est_copy,(apforest->forest, 0)); /* 0 indicates no data copying */ 8669566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityLabel(dm,&adaptLabel)); 8670a96aa3bSJed Brown if (adaptLabel) { 8680a96aa3bSJed Brown /* apply the refinement/coarsening by flags, plus minimum/maximum refinement */ 8699566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(adaptLabel,&numValues)); 8709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&numValues,&numValuesGlobal,1,MPIU_INT,MPI_MAX,PetscObjectComm((PetscObject)adaptFrom))); 8719566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(adaptLabel,&defaultValue)); 8720a96aa3bSJed Brown if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN_LAST) { /* uniform coarsen of the last level only (equivalent to DM_ADAPT_COARSEN for conforming grids) */ 8739566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm,&ctx.minLevel)); 8749566063dSJacob Faibussowitsch PetscCall(DMPforestGetRefinementLevel(dm,&ctx.currLevel)); 8750a96aa3bSJed Brown pforest->forest->user_pointer = (void*) &ctx; 8760a96aa3bSJed Brown PetscStackCallP4est(p4est_coarsen,(pforest->forest,0,pforest_coarsen_currlevel,NULL)); 8770a96aa3bSJed Brown pforest->forest->user_pointer = (void*) dm; 8780a96aa3bSJed Brown PetscStackCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL)); 8790a96aa3bSJed Brown /* we will have to change the offset after we compute the overlap */ 8800a96aa3bSJed Brown if (computeAdaptSF) { 8819566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm),pforest->forest,0,apforest->forest,apforest->cLocalStart,&coarseToPreFine,NULL)); 8820a96aa3bSJed Brown } 8830a96aa3bSJed Brown } else if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN) { /* uniform coarsen */ 8849566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm,&ctx.minLevel)); 8850a96aa3bSJed Brown pforest->forest->user_pointer = (void*) &ctx; 8860a96aa3bSJed Brown PetscStackCallP4est(p4est_coarsen,(pforest->forest,0,pforest_coarsen_uniform,NULL)); 8870a96aa3bSJed Brown pforest->forest->user_pointer = (void*) dm; 8880a96aa3bSJed Brown PetscStackCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL)); 8890a96aa3bSJed Brown /* we will have to change the offset after we compute the overlap */ 8900a96aa3bSJed Brown if (computeAdaptSF) { 8919566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm),pforest->forest,0,apforest->forest,apforest->cLocalStart,&coarseToPreFine,NULL)); 8920a96aa3bSJed Brown } 8930a96aa3bSJed Brown } else if (!numValuesGlobal && defaultValue == DM_ADAPT_REFINE) { /* uniform refine */ 8949566063dSJacob Faibussowitsch PetscCall(DMForestGetMaximumRefinement(dm,&ctx.maxLevel)); 8950a96aa3bSJed Brown pforest->forest->user_pointer = (void*) &ctx; 8960a96aa3bSJed Brown PetscStackCallP4est(p4est_refine,(pforest->forest,0,pforest_refine_uniform,NULL)); 8970a96aa3bSJed Brown pforest->forest->user_pointer = (void*) dm; 8980a96aa3bSJed Brown PetscStackCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL)); 8990a96aa3bSJed Brown /* we will have to change the offset after we compute the overlap */ 9000a96aa3bSJed Brown if (computeAdaptSF) { 9019566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm),apforest->forest,apforest->cLocalStart,pforest->forest,0,&preCoarseToFine,NULL)); 9020a96aa3bSJed Brown } 9030a96aa3bSJed Brown } else if (numValuesGlobal) { 9040a96aa3bSJed Brown p4est_t *p4est = pforest->forest; 9050a96aa3bSJed Brown PetscInt *cellFlags; 9060a96aa3bSJed Brown DMForestAdaptivityStrategy strategy; 9070a96aa3bSJed Brown PetscSF cellSF; 9080a96aa3bSJed Brown PetscInt c, cStart, cEnd; 9090a96aa3bSJed Brown PetscBool adaptAny; 9100a96aa3bSJed Brown 9119566063dSJacob Faibussowitsch PetscCall(DMForestGetMaximumRefinement(dm,&ctx.maxLevel)); 9129566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm,&ctx.minLevel)); 9139566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityStrategy(dm,&strategy)); 9149566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(strategy,"any",3,&adaptAny)); 9159566063dSJacob Faibussowitsch PetscCall(DMForestGetCellChart(adaptFrom,&cStart,&cEnd)); 9169566063dSJacob Faibussowitsch PetscCall(DMForestGetCellSF(adaptFrom,&cellSF)); 9179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEnd-cStart,&cellFlags)); 9189566063dSJacob Faibussowitsch for (c = cStart; c < cEnd; c++) PetscCall(DMLabelGetValue(adaptLabel,c,&cellFlags[c-cStart])); 9190a96aa3bSJed Brown if (cellSF) { 9200a96aa3bSJed Brown if (adaptAny) { 9219566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(cellSF,MPIU_INT,cellFlags,cellFlags,MPI_MAX)); 9229566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(cellSF,MPIU_INT,cellFlags,cellFlags,MPI_MAX)); 9230a96aa3bSJed Brown } else { 9249566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(cellSF,MPIU_INT,cellFlags,cellFlags,MPI_MIN)); 9259566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(cellSF,MPIU_INT,cellFlags,cellFlags,MPI_MIN)); 9260a96aa3bSJed Brown } 9270a96aa3bSJed Brown } 9280a96aa3bSJed Brown for (t = flt, count = cLocalStart; t <= llt; t++) { 9290a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t*) p4est->trees->array)[t]); 9300a96aa3bSJed Brown PetscInt numQuads = (PetscInt) tree->quadrants.elem_count, i; 9310a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *) tree->quadrants.array; 9320a96aa3bSJed Brown 9330a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 9340a96aa3bSJed Brown p4est_quadrant_t *q = &quads[i]; 9350a96aa3bSJed Brown q->p.user_int = cellFlags[count++]; 9360a96aa3bSJed Brown } 9370a96aa3bSJed Brown } 9389566063dSJacob Faibussowitsch PetscCall(PetscFree(cellFlags)); 9390a96aa3bSJed Brown 9400a96aa3bSJed Brown pforest->forest->user_pointer = (void*) &ctx; 941*1baa6e33SBarry Smith if (adaptAny) PetscStackCallP4est(p4est_coarsen,(pforest->forest,0,pforest_coarsen_flag_any,pforest_init_determine)); 942*1baa6e33SBarry Smith else PetscStackCallP4est(p4est_coarsen,(pforest->forest,0,pforest_coarsen_flag_all,pforest_init_determine)); 9430a96aa3bSJed Brown PetscStackCallP4est(p4est_refine,(pforest->forest,0,pforest_refine_flag,NULL)); 9440a96aa3bSJed Brown pforest->forest->user_pointer = (void*) dm; 9450a96aa3bSJed Brown PetscStackCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL)); 9460a96aa3bSJed Brown if (computeAdaptSF) { 9479566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm),apforest->forest,apforest->cLocalStart,pforest->forest,0,&preCoarseToFine,&coarseToPreFine)); 9480a96aa3bSJed Brown } 9490a96aa3bSJed Brown } 9500a96aa3bSJed Brown for (t = flt, count = cLocalStart; t <= llt; t++) { 9510a96aa3bSJed Brown p4est_tree_t *atree = &(((p4est_tree_t*) apforest->forest->trees->array)[t]); 9520a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t*) pforest->forest->trees->array)[t]); 9530a96aa3bSJed Brown PetscInt anumQuads = (PetscInt) atree->quadrants.elem_count, i; 9540a96aa3bSJed Brown PetscInt numQuads = (PetscInt) tree->quadrants.elem_count; 9550a96aa3bSJed Brown p4est_quadrant_t *aquads = (p4est_quadrant_t *) atree->quadrants.array; 9560a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *) tree->quadrants.array; 9570a96aa3bSJed Brown 9580a96aa3bSJed Brown if (anumQuads != numQuads) { 9590a96aa3bSJed Brown ctx.anyChange = PETSC_TRUE; 9600a96aa3bSJed Brown } else { 9610a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 9620a96aa3bSJed Brown p4est_quadrant_t *aq = &aquads[i]; 9630a96aa3bSJed Brown p4est_quadrant_t *q = &quads[i]; 9640a96aa3bSJed Brown 9650a96aa3bSJed Brown if (aq->level != q->level) { 9660a96aa3bSJed Brown ctx.anyChange = PETSC_TRUE; 9670a96aa3bSJed Brown break; 9680a96aa3bSJed Brown } 9690a96aa3bSJed Brown } 9700a96aa3bSJed Brown } 9710a96aa3bSJed Brown if (ctx.anyChange) { 9720a96aa3bSJed Brown break; 9730a96aa3bSJed Brown } 9740a96aa3bSJed Brown } 9750a96aa3bSJed Brown } 9760a96aa3bSJed Brown { 9770a96aa3bSJed Brown PetscInt numLabels, l; 9780a96aa3bSJed Brown 9799566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(adaptFrom,&numLabels)); 9800a96aa3bSJed Brown for (l = 0; l < numLabels; l++) { 9810a96aa3bSJed Brown PetscBool isDepth, isCellType, isGhost, isVTK; 9820a96aa3bSJed Brown DMLabel label, labelNew; 9830a96aa3bSJed Brown PetscInt defVal; 9840a96aa3bSJed Brown const char *name; 9850a96aa3bSJed Brown 9869566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(adaptFrom, l, &name)); 9879566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(adaptFrom, l, &label)); 9889566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"depth",&isDepth)); 9890a96aa3bSJed Brown if (isDepth) continue; 9909566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"celltype",&isCellType)); 9910a96aa3bSJed Brown if (isCellType) continue; 9929566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"ghost",&isGhost)); 9930a96aa3bSJed Brown if (isGhost) continue; 9949566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"vtk",&isVTK)); 9950a96aa3bSJed Brown if (isVTK) continue; 9969566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm,name)); 9979566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm,name,&labelNew)); 9989566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label,&defVal)); 9999566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(labelNew,defVal)); 10000a96aa3bSJed Brown } 10010a96aa3bSJed Brown } 10020a96aa3bSJed Brown } else { /* initial */ 10030a96aa3bSJed Brown PetscInt initLevel, minLevel; 10040a96aa3bSJed Brown 10059566063dSJacob Faibussowitsch PetscCall(DMForestGetInitialRefinement(dm,&initLevel)); 10069566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm,&minLevel)); 10070a96aa3bSJed Brown PetscStackCallP4estReturn(pforest->forest,p4est_new_ext,(PetscObjectComm((PetscObject)dm),pforest->topo->conn, 10080a96aa3bSJed Brown 0, /* minimum number of quadrants per processor */ 10090a96aa3bSJed Brown initLevel, /* level of refinement */ 10100a96aa3bSJed Brown 1, /* uniform refinement */ 10110a96aa3bSJed Brown 0, /* we don't allocate any per quadrant data */ 10120a96aa3bSJed Brown NULL, /* there is no special quadrant initialization */ 10130a96aa3bSJed Brown (void*)dm)); /* this dm is the user context */ 10140a96aa3bSJed Brown 10150a96aa3bSJed Brown if (initLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE; 10160a96aa3bSJed Brown if (dm->setfromoptionscalled) { 10170a96aa3bSJed Brown PetscBool flgPattern, flgFractal; 10180a96aa3bSJed Brown PetscInt corner = 0; 10190a96aa3bSJed Brown PetscInt corners[P4EST_CHILDREN], ncorner = P4EST_CHILDREN; 10200a96aa3bSJed Brown PetscReal likelihood = 1./ P4EST_DIM; 10210a96aa3bSJed Brown PetscInt pattern; 10220a96aa3bSJed Brown const char *prefix; 10230a96aa3bSJed Brown 10249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm,&prefix)); 10259566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEList(((PetscObject)dm)->options,prefix,"-dm_p4est_refine_pattern",DMRefinePatternName,PATTERN_COUNT,&pattern,&flgPattern)); 10269566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(((PetscObject)dm)->options,prefix,"-dm_p4est_refine_corner",&corner,NULL)); 10279566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options,prefix,"-dm_p4est_refine_fractal_corners",corners,&ncorner,&flgFractal)); 10289566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_refine_hash_likelihood",&likelihood,NULL)); 10290a96aa3bSJed Brown 10300a96aa3bSJed Brown if (flgPattern) { 10310a96aa3bSJed Brown DMRefinePatternCtx *ctx; 10320a96aa3bSJed Brown PetscInt maxLevel; 10330a96aa3bSJed Brown 10349566063dSJacob Faibussowitsch PetscCall(DMForestGetMaximumRefinement(dm,&maxLevel)); 10359566063dSJacob Faibussowitsch PetscCall(PetscNewLog(dm,&ctx)); 10360a96aa3bSJed Brown ctx->maxLevel = PetscMin(maxLevel,P4EST_QMAXLEVEL); 10370a96aa3bSJed Brown if (initLevel + ctx->maxLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE; 10380a96aa3bSJed Brown switch (pattern) { 10390a96aa3bSJed Brown case PATTERN_HASH: 10400a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Hash; 10410a96aa3bSJed Brown ctx->hashLikelihood = likelihood; 10420a96aa3bSJed Brown break; 10430a96aa3bSJed Brown case PATTERN_CORNER: 10440a96aa3bSJed Brown ctx->corner = corner; 10450a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Corner; 10460a96aa3bSJed Brown break; 10470a96aa3bSJed Brown case PATTERN_CENTER: 10480a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Center; 10490a96aa3bSJed Brown break; 10500a96aa3bSJed Brown case PATTERN_FRACTAL: 10510a96aa3bSJed Brown if (flgFractal) { 10520a96aa3bSJed Brown PetscInt i; 10530a96aa3bSJed Brown 10540a96aa3bSJed Brown for (i = 0; i < ncorner; i++) ctx->fractal[corners[i]] = PETSC_TRUE; 10550a96aa3bSJed Brown } else { 10560a96aa3bSJed Brown #if !defined(P4_TO_P8) 10570a96aa3bSJed Brown ctx->fractal[0] = ctx->fractal[1] = ctx->fractal[2] = PETSC_TRUE; 10580a96aa3bSJed Brown #else 10590a96aa3bSJed Brown ctx->fractal[0] = ctx->fractal[3] = ctx->fractal[5] = ctx->fractal[6] = PETSC_TRUE; 10600a96aa3bSJed Brown #endif 10610a96aa3bSJed Brown } 10620a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Fractal; 10630a96aa3bSJed Brown break; 10640a96aa3bSJed Brown default: 10650a96aa3bSJed Brown SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Not a valid refinement pattern"); 10660a96aa3bSJed Brown } 10670a96aa3bSJed Brown 10680a96aa3bSJed Brown pforest->forest->user_pointer = (void*) ctx; 10690a96aa3bSJed Brown PetscStackCallP4est(p4est_refine,(pforest->forest,1,ctx->refine_fn,NULL)); 10700a96aa3bSJed Brown PetscStackCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL)); 10719566063dSJacob Faibussowitsch PetscCall(PetscFree(ctx)); 10720a96aa3bSJed Brown pforest->forest->user_pointer = (void*) dm; 10730a96aa3bSJed Brown } 10740a96aa3bSJed Brown } 10750a96aa3bSJed Brown } 10760a96aa3bSJed Brown if (pforest->coarsen_hierarchy) { 10770a96aa3bSJed Brown PetscInt initLevel, currLevel, minLevel; 10780a96aa3bSJed Brown 10799566063dSJacob Faibussowitsch PetscCall(DMPforestGetRefinementLevel(dm,&currLevel)); 10809566063dSJacob Faibussowitsch PetscCall(DMForestGetInitialRefinement(dm,&initLevel)); 10819566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm,&minLevel)); 10820a96aa3bSJed Brown if (currLevel > minLevel) { 10830a96aa3bSJed Brown DM_Forest_pforest *coarse_pforest; 10840a96aa3bSJed Brown DMLabel coarsen; 10850a96aa3bSJed Brown DM coarseDM; 10860a96aa3bSJed Brown 10879566063dSJacob Faibussowitsch PetscCall(DMForestTemplate(dm,MPI_COMM_NULL,&coarseDM)); 10889566063dSJacob Faibussowitsch PetscCall(DMForestSetAdaptivityPurpose(coarseDM,DM_ADAPT_COARSEN)); 10899566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "coarsen",&coarsen)); 10909566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(coarsen,DM_ADAPT_COARSEN)); 10919566063dSJacob Faibussowitsch PetscCall(DMForestSetAdaptivityLabel(coarseDM,coarsen)); 10929566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&coarsen)); 10939566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm,coarseDM)); 10949566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)coarseDM)); 10950a96aa3bSJed Brown initLevel = currLevel == initLevel ? initLevel - 1 : initLevel; 10969566063dSJacob Faibussowitsch PetscCall(DMForestSetInitialRefinement(coarseDM,initLevel)); 10979566063dSJacob Faibussowitsch PetscCall(DMForestSetMinimumRefinement(coarseDM,minLevel)); 10980a96aa3bSJed Brown coarse_pforest = (DM_Forest_pforest*) ((DM_Forest*) coarseDM->data)->data; 10990a96aa3bSJed Brown coarse_pforest->coarsen_hierarchy = PETSC_TRUE; 11000a96aa3bSJed Brown } 11010a96aa3bSJed Brown } 11020a96aa3bSJed Brown 11030a96aa3bSJed Brown { /* repartitioning and overlap */ 11040a96aa3bSJed Brown PetscMPIInt size, rank; 11050a96aa3bSJed Brown 11069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size)); 11079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank)); 11080a96aa3bSJed Brown if ((size > 1) && (pforest->partition_for_coarsening || forest->cellWeights || forest->weightCapacity != 1. || forest->weightsFactor != 1.)) { 11090a96aa3bSJed Brown PetscBool copyForest = PETSC_FALSE; 11100a96aa3bSJed Brown p4est_t *forest_copy = NULL; 11110a96aa3bSJed Brown p4est_gloidx_t shipped = 0; 11120a96aa3bSJed Brown 11130a96aa3bSJed Brown if (preCoarseToFine || coarseToPreFine) copyForest = PETSC_TRUE; 11140a96aa3bSJed Brown if (copyForest) PetscStackCallP4estReturn(forest_copy,p4est_copy,(pforest->forest,0)); 11150a96aa3bSJed Brown 11160a96aa3bSJed Brown if (!forest->cellWeights && forest->weightCapacity == 1. && forest->weightsFactor == 1.) { 11170a96aa3bSJed Brown PetscStackCallP4estReturn(shipped,p4est_partition_ext,(pforest->forest,(int)pforest->partition_for_coarsening,NULL)); 11180a96aa3bSJed Brown } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Non-uniform partition cases not implemented yet"); 11190a96aa3bSJed Brown if (shipped) ctx.anyChange = PETSC_TRUE; 11200a96aa3bSJed Brown if (forest_copy) { 11210a96aa3bSJed Brown if (preCoarseToFine || coarseToPreFine) { 11220a96aa3bSJed Brown PetscSF repartSF; /* repartSF has roots in the old partition */ 11230a96aa3bSJed Brown PetscInt pStart = -1, pEnd = -1, p; 11240a96aa3bSJed Brown PetscInt numRoots, numLeaves; 11250a96aa3bSJed Brown PetscSFNode *repartRoots; 11260a96aa3bSJed Brown p4est_gloidx_t postStart = pforest->forest->global_first_quadrant[rank]; 11270a96aa3bSJed Brown p4est_gloidx_t postEnd = pforest->forest->global_first_quadrant[rank+1]; 11280a96aa3bSJed Brown p4est_gloidx_t partOffset = postStart; 11290a96aa3bSJed Brown 11300a96aa3bSJed Brown numRoots = (PetscInt) (forest_copy->global_first_quadrant[rank + 1] - forest_copy->global_first_quadrant[rank]); 11310a96aa3bSJed Brown numLeaves = (PetscInt) (postEnd - postStart); 11329566063dSJacob Faibussowitsch PetscCall(DMPforestComputeOverlappingRanks(size,rank,pforest->forest,forest_copy,&pStart,&pEnd)); 11339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((PetscInt) pforest->forest->local_num_quadrants,&repartRoots)); 11340a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 11350a96aa3bSJed Brown p4est_gloidx_t preStart = forest_copy->global_first_quadrant[p]; 11360a96aa3bSJed Brown p4est_gloidx_t preEnd = forest_copy->global_first_quadrant[p+1]; 11370a96aa3bSJed Brown PetscInt q; 11380a96aa3bSJed Brown 11390a96aa3bSJed Brown if (preEnd == preStart) continue; 114008401ef6SPierre Jolivet PetscCheck(preStart <= postStart,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Bad partition overlap computation"); 11410a96aa3bSJed Brown preEnd = preEnd > postEnd ? postEnd : preEnd; 11420a96aa3bSJed Brown for (q = partOffset; q < preEnd; q++) { 11430a96aa3bSJed Brown repartRoots[q - postStart].rank = p; 11440a96aa3bSJed Brown repartRoots[q - postStart].index = partOffset - preStart; 11450a96aa3bSJed Brown } 11460a96aa3bSJed Brown partOffset = preEnd; 11470a96aa3bSJed Brown } 11489566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm),&repartSF)); 11499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(repartSF,numRoots,numLeaves,NULL,PETSC_OWN_POINTER,repartRoots,PETSC_OWN_POINTER)); 11509566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(repartSF)); 11510a96aa3bSJed Brown if (preCoarseToFine) { 11520a96aa3bSJed Brown PetscSF repartSFembed, preCoarseToFineNew; 11530a96aa3bSJed Brown PetscInt nleaves; 11540a96aa3bSJed Brown const PetscInt *leaves; 11550a96aa3bSJed Brown 11569566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(preCoarseToFine)); 11579566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(preCoarseToFine,NULL,&nleaves,&leaves,NULL)); 11580a96aa3bSJed Brown if (leaves) { 11599566063dSJacob Faibussowitsch PetscCall(PetscSFCreateEmbeddedRootSF(repartSF,nleaves,leaves,&repartSFembed)); 11600a96aa3bSJed Brown } else { 11610a96aa3bSJed Brown repartSFembed = repartSF; 11629566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)repartSFembed)); 11630a96aa3bSJed Brown } 11649566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(preCoarseToFine,repartSFembed,&preCoarseToFineNew)); 11659566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&preCoarseToFine)); 11669566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&repartSFembed)); 11670a96aa3bSJed Brown preCoarseToFine = preCoarseToFineNew; 11680a96aa3bSJed Brown } 11690a96aa3bSJed Brown if (coarseToPreFine) { 11700a96aa3bSJed Brown PetscSF repartSFinv, coarseToPreFineNew; 11710a96aa3bSJed Brown 11729566063dSJacob Faibussowitsch PetscCall(PetscSFCreateInverseSF(repartSF,&repartSFinv)); 11739566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(repartSFinv,coarseToPreFine,&coarseToPreFineNew)); 11749566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseToPreFine)); 11759566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&repartSFinv)); 11760a96aa3bSJed Brown coarseToPreFine = coarseToPreFineNew; 11770a96aa3bSJed Brown } 11789566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&repartSF)); 11790a96aa3bSJed Brown } 11800a96aa3bSJed Brown PetscStackCallP4est(p4est_destroy,(forest_copy)); 11810a96aa3bSJed Brown } 11820a96aa3bSJed Brown } 11830a96aa3bSJed Brown if (size > 1) { 11840a96aa3bSJed Brown PetscInt overlap; 11850a96aa3bSJed Brown 11869566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm,&overlap)); 11870a96aa3bSJed Brown 11880a96aa3bSJed Brown if (adaptFrom) { 11890a96aa3bSJed Brown PetscInt aoverlap; 11900a96aa3bSJed Brown 11919566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(adaptFrom,&aoverlap)); 11920a96aa3bSJed Brown if (aoverlap != overlap) { 11930a96aa3bSJed Brown ctx.anyChange = PETSC_TRUE; 11940a96aa3bSJed Brown } 11950a96aa3bSJed Brown } 11960a96aa3bSJed Brown 11970a96aa3bSJed Brown if (overlap > 0) { 11980a96aa3bSJed Brown PetscInt i, cLocalStart; 11990a96aa3bSJed Brown PetscInt cEnd; 12000a96aa3bSJed Brown PetscSF preCellSF = NULL, cellSF = NULL; 12010a96aa3bSJed Brown 12020a96aa3bSJed Brown PetscStackCallP4estReturn(pforest->ghost,p4est_ghost_new,(pforest->forest,P4EST_CONNECT_FULL)); 12030a96aa3bSJed Brown PetscStackCallP4estReturn(pforest->lnodes,p4est_lnodes_new,(pforest->forest,pforest->ghost,-P4EST_DIM)); 12040a96aa3bSJed Brown PetscStackCallP4est(p4est_ghost_support_lnodes,(pforest->forest,pforest->lnodes,pforest->ghost)); 12050a96aa3bSJed Brown for (i = 1; i < overlap; i++) PetscStackCallP4est(p4est_ghost_expand_by_lnodes,(pforest->forest,pforest->lnodes,pforest->ghost)); 12060a96aa3bSJed Brown 12070a96aa3bSJed Brown cLocalStart = pforest->cLocalStart = pforest->ghost->proc_offsets[rank]; 12080a96aa3bSJed Brown cEnd = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[size]; 12090a96aa3bSJed Brown 12100a96aa3bSJed Brown /* shift sfs by cLocalStart, expand by cell SFs */ 12110a96aa3bSJed Brown if (preCoarseToFine || coarseToPreFine) { 12129566063dSJacob Faibussowitsch if (adaptFrom) PetscCall(DMForestGetCellSF(adaptFrom,&preCellSF)); 12130a96aa3bSJed Brown dm->setupcalled = PETSC_TRUE; 12149566063dSJacob Faibussowitsch PetscCall(DMForestGetCellSF(dm,&cellSF)); 12150a96aa3bSJed Brown } 12160a96aa3bSJed Brown if (preCoarseToFine) { 12170a96aa3bSJed Brown PetscSF preCoarseToFineNew; 12180a96aa3bSJed Brown PetscInt nleaves, nroots, *leavesNew, i, nleavesNew; 12190a96aa3bSJed Brown const PetscInt *leaves; 12200a96aa3bSJed Brown const PetscSFNode *remotes; 12210a96aa3bSJed Brown PetscSFNode *remotesAll; 12220a96aa3bSJed Brown 12239566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(preCoarseToFine)); 12249566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(preCoarseToFine,&nroots,&nleaves,&leaves,&remotes)); 12259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEnd,&remotesAll)); 12260a96aa3bSJed Brown for (i = 0; i < cEnd; i++) { 12270a96aa3bSJed Brown remotesAll[i].rank = -1; 12280a96aa3bSJed Brown remotesAll[i].index = -1; 12290a96aa3bSJed Brown } 12300a96aa3bSJed Brown for (i = 0; i < nleaves; i++) remotesAll[(leaves ? leaves[i] : i) + cLocalStart] = remotes[i]; 12319566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(cellSF)); 12329566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(cellSF,MPIU_2INT,remotesAll,remotesAll,MPI_REPLACE)); 12339566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(cellSF,MPIU_2INT,remotesAll,remotesAll,MPI_REPLACE)); 12340a96aa3bSJed Brown nleavesNew = 0; 12350a96aa3bSJed Brown for (i = 0; i < nleaves; i++) { 12360a96aa3bSJed Brown if (remotesAll[i].rank >= 0) nleavesNew++; 12370a96aa3bSJed Brown } 12389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleavesNew,&leavesNew)); 12390a96aa3bSJed Brown nleavesNew = 0; 12400a96aa3bSJed Brown for (i = 0; i < nleaves; i++) { 12410a96aa3bSJed Brown if (remotesAll[i].rank >= 0) { 12420a96aa3bSJed Brown leavesNew[nleavesNew] = i; 12430a96aa3bSJed Brown if (i > nleavesNew) remotesAll[nleavesNew] = remotesAll[i]; 12440a96aa3bSJed Brown nleavesNew++; 12450a96aa3bSJed Brown } 12460a96aa3bSJed Brown } 12479566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm),&preCoarseToFineNew)); 12480a96aa3bSJed Brown if (nleavesNew < cEnd) { 12499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(preCoarseToFineNew,nroots,nleavesNew,leavesNew,PETSC_OWN_POINTER,remotesAll,PETSC_COPY_VALUES)); 12500a96aa3bSJed Brown } else { /* all cells are leaves */ 12519566063dSJacob Faibussowitsch PetscCall(PetscFree(leavesNew)); 12529566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(preCoarseToFineNew,nroots,nleavesNew,NULL,PETSC_OWN_POINTER,remotesAll,PETSC_COPY_VALUES)); 12530a96aa3bSJed Brown } 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesAll)); 12559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&preCoarseToFine)); 12560a96aa3bSJed Brown preCoarseToFine = preCoarseToFineNew; 12570a96aa3bSJed Brown preCoarseToFine = preCoarseToFineNew; 12580a96aa3bSJed Brown } 12590a96aa3bSJed Brown if (coarseToPreFine) { 12600a96aa3bSJed Brown PetscSF coarseToPreFineNew; 12610a96aa3bSJed Brown PetscInt nleaves, nroots, i, nleavesCellSF, nleavesExpanded, *leavesNew; 12620a96aa3bSJed Brown const PetscInt *leaves; 12630a96aa3bSJed Brown const PetscSFNode *remotes; 12640a96aa3bSJed Brown PetscSFNode *remotesNew, *remotesNewRoot, *remotesExpanded; 12650a96aa3bSJed Brown 12669566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(coarseToPreFine)); 12679566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseToPreFine,&nroots,&nleaves,&leaves,&remotes)); 12689566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(preCellSF,NULL,&nleavesCellSF,NULL,NULL)); 12699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots,&remotesNewRoot)); 12709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves,&remotesNew)); 12710a96aa3bSJed Brown for (i = 0; i < nroots; i++) { 12720a96aa3bSJed Brown remotesNewRoot[i].rank = rank; 12730a96aa3bSJed Brown remotesNewRoot[i].index = i + cLocalStart; 12740a96aa3bSJed Brown } 12759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coarseToPreFine,MPIU_2INT,remotesNewRoot,remotesNew,MPI_REPLACE)); 12769566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coarseToPreFine,MPIU_2INT,remotesNewRoot,remotesNew,MPI_REPLACE)); 12779566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesNewRoot)); 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleavesCellSF,&remotesExpanded)); 12790a96aa3bSJed Brown for (i = 0; i < nleavesCellSF; i++) { 12800a96aa3bSJed Brown remotesExpanded[i].rank = -1; 12810a96aa3bSJed Brown remotesExpanded[i].index = -1; 12820a96aa3bSJed Brown } 12830a96aa3bSJed Brown for (i = 0; i < nleaves; i++) remotesExpanded[leaves ? leaves[i] : i] = remotesNew[i]; 12849566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesNew)); 12859566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(preCellSF,MPIU_2INT,remotesExpanded,remotesExpanded,MPI_REPLACE)); 12869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(preCellSF,MPIU_2INT,remotesExpanded,remotesExpanded,MPI_REPLACE)); 12870a96aa3bSJed Brown 12880a96aa3bSJed Brown nleavesExpanded = 0; 12890a96aa3bSJed Brown for (i = 0; i < nleavesCellSF; i++) { 12900a96aa3bSJed Brown if (remotesExpanded[i].rank >= 0) nleavesExpanded++; 12910a96aa3bSJed Brown } 12929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleavesExpanded,&leavesNew)); 12930a96aa3bSJed Brown nleavesExpanded = 0; 12940a96aa3bSJed Brown for (i = 0; i < nleavesCellSF; i++) { 12950a96aa3bSJed Brown if (remotesExpanded[i].rank >= 0) { 12960a96aa3bSJed Brown leavesNew[nleavesExpanded] = i; 12970a96aa3bSJed Brown if (i > nleavesExpanded) remotesExpanded[nleavesExpanded] = remotes[i]; 12980a96aa3bSJed Brown nleavesExpanded++; 12990a96aa3bSJed Brown } 13000a96aa3bSJed Brown } 13019566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm),&coarseToPreFineNew)); 13020a96aa3bSJed Brown if (nleavesExpanded < nleavesCellSF) { 13039566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(coarseToPreFineNew,cEnd,nleavesExpanded,leavesNew,PETSC_OWN_POINTER,remotesExpanded,PETSC_COPY_VALUES)); 13040a96aa3bSJed Brown } else { 13059566063dSJacob Faibussowitsch PetscCall(PetscFree(leavesNew)); 13069566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(coarseToPreFineNew,cEnd,nleavesExpanded,NULL,PETSC_OWN_POINTER,remotesExpanded,PETSC_COPY_VALUES)); 13070a96aa3bSJed Brown } 13089566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesExpanded)); 13099566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseToPreFine)); 13100a96aa3bSJed Brown coarseToPreFine = coarseToPreFineNew; 13110a96aa3bSJed Brown } 13120a96aa3bSJed Brown } 13130a96aa3bSJed Brown } 13140a96aa3bSJed Brown } 13150a96aa3bSJed Brown forest->preCoarseToFine = preCoarseToFine; 13160a96aa3bSJed Brown forest->coarseToPreFine = coarseToPreFine; 13170a96aa3bSJed Brown dm->setupcalled = PETSC_TRUE; 13189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&ctx.anyChange,&(pforest->adaptivitySuccess),1,MPIU_BOOL,MPI_LOR,PetscObjectComm((PetscObject)dm))); 13199566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,NULL)); 13200a96aa3bSJed Brown PetscFunctionReturn(0); 13210a96aa3bSJed Brown } 13220a96aa3bSJed Brown 13230a96aa3bSJed Brown #define DMForestGetAdaptivitySuccess_pforest _append_pforest(DMForestGetAdaptivitySuccess) 13240a96aa3bSJed Brown static PetscErrorCode DMForestGetAdaptivitySuccess_pforest(DM dm, PetscBool *success) 13250a96aa3bSJed Brown { 13260a96aa3bSJed Brown DM_Forest *forest; 13270a96aa3bSJed Brown DM_Forest_pforest *pforest; 13280a96aa3bSJed Brown 13290a96aa3bSJed Brown PetscFunctionBegin; 13300a96aa3bSJed Brown forest = (DM_Forest *) dm->data; 13310a96aa3bSJed Brown pforest = (DM_Forest_pforest *) forest->data; 13320a96aa3bSJed Brown *success = pforest->adaptivitySuccess; 13330a96aa3bSJed Brown PetscFunctionReturn(0); 13340a96aa3bSJed Brown } 13350a96aa3bSJed Brown 13360a96aa3bSJed Brown #define DMView_ASCII_pforest _append_pforest(DMView_ASCII) 13370a96aa3bSJed Brown static PetscErrorCode DMView_ASCII_pforest(PetscObject odm, PetscViewer viewer) 13380a96aa3bSJed Brown { 13390a96aa3bSJed Brown DM dm = (DM) odm; 13400a96aa3bSJed Brown 13410a96aa3bSJed Brown PetscFunctionBegin; 13420a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13430a96aa3bSJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 13449566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 13450a96aa3bSJed Brown switch (viewer->format) { 13460a96aa3bSJed Brown case PETSC_VIEWER_DEFAULT: 13470a96aa3bSJed Brown case PETSC_VIEWER_ASCII_INFO: 13480a96aa3bSJed Brown { 13490a96aa3bSJed Brown PetscInt dim; 13500a96aa3bSJed Brown const char *name; 13510a96aa3bSJed Brown 13529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) dm, &name)); 13539566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 135463a3b9bcSJacob Faibussowitsch if (name) PetscCall(PetscViewerASCIIPrintf(viewer, "Forest %s in %" PetscInt_FMT " dimensions:\n", name, dim)); 135563a3b9bcSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Forest in %" PetscInt_FMT " dimensions:\n", dim)); 13560a96aa3bSJed Brown } 13570a96aa3bSJed Brown case PETSC_VIEWER_ASCII_INFO_DETAIL: 13580a96aa3bSJed Brown case PETSC_VIEWER_LOAD_BALANCE: 13590a96aa3bSJed Brown { 13600a96aa3bSJed Brown DM plex; 13610a96aa3bSJed Brown 13629566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 13639566063dSJacob Faibussowitsch PetscCall(DMView(plex, viewer)); 13640a96aa3bSJed Brown } 13650a96aa3bSJed Brown break; 136698921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]); 13670a96aa3bSJed Brown } 13680a96aa3bSJed Brown PetscFunctionReturn(0); 13690a96aa3bSJed Brown } 13700a96aa3bSJed Brown 13710a96aa3bSJed Brown #define DMView_VTK_pforest _append_pforest(DMView_VTK) 13720a96aa3bSJed Brown static PetscErrorCode DMView_VTK_pforest(PetscObject odm, PetscViewer viewer) 13730a96aa3bSJed Brown { 13740a96aa3bSJed Brown DM dm = (DM) odm; 13750a96aa3bSJed Brown DM_Forest *forest = (DM_Forest*) dm->data; 13760a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data; 13770a96aa3bSJed Brown PetscBool isvtk; 13780a96aa3bSJed Brown PetscReal vtkScale = 1. - PETSC_MACHINE_EPSILON; 13790a96aa3bSJed Brown PetscViewer_VTK *vtk = (PetscViewer_VTK*)viewer->data; 13800a96aa3bSJed Brown const char *name; 13810a96aa3bSJed Brown char *filenameStrip = NULL; 13820a96aa3bSJed Brown PetscBool hasExt; 13830a96aa3bSJed Brown size_t len; 13840a96aa3bSJed Brown p4est_geometry_t *geom; 13850a96aa3bSJed Brown 13860a96aa3bSJed Brown PetscFunctionBegin; 13870a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13880a96aa3bSJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 13899566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 13900a96aa3bSJed Brown geom = pforest->topo->geom; 13919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 139228b400f6SJacob Faibussowitsch PetscCheck(isvtk,PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Cannot use viewer type %s", ((PetscObject)viewer)->type_name); 13930a96aa3bSJed Brown switch (viewer->format) { 13940a96aa3bSJed Brown case PETSC_VIEWER_VTK_VTU: 139528b400f6SJacob Faibussowitsch PetscCheck(pforest->forest,PetscObjectComm(odm),PETSC_ERR_ARG_WRONG,"DM has not been setup with a valid forest"); 13960a96aa3bSJed Brown name = vtk->filename; 13979566063dSJacob Faibussowitsch PetscCall(PetscStrlen(name,&len)); 13989566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp(name+len-4,".vtu",&hasExt)); 13990a96aa3bSJed Brown if (hasExt) { 14009566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name,&filenameStrip)); 14010a96aa3bSJed Brown filenameStrip[len-4]='\0'; 14020a96aa3bSJed Brown name = filenameStrip; 14030a96aa3bSJed Brown } 14040a96aa3bSJed Brown if (!pforest->topo->geom) PetscStackCallP4estReturn(geom,p4est_geometry_new_connectivity,(pforest->topo->conn)); 14050a96aa3bSJed Brown { 14060a96aa3bSJed Brown p4est_vtk_context_t *pvtk; 14070a96aa3bSJed Brown int footerr; 14080a96aa3bSJed Brown 14090a96aa3bSJed Brown PetscStackCallP4estReturn(pvtk,p4est_vtk_context_new,(pforest->forest,name)); 14100a96aa3bSJed Brown PetscStackCallP4est(p4est_vtk_context_set_geom,(pvtk,geom)); 14110a96aa3bSJed Brown PetscStackCallP4est(p4est_vtk_context_set_scale,(pvtk,(double)vtkScale)); 14120a96aa3bSJed Brown PetscStackCallP4estReturn(pvtk,p4est_vtk_write_header,(pvtk)); 141328b400f6SJacob Faibussowitsch PetscCheck(pvtk,PetscObjectComm((PetscObject)odm),PETSC_ERR_LIB,P4EST_STRING "_vtk_write_header() failed"); 14140a96aa3bSJed Brown PetscStackCallP4estReturn(pvtk,p4est_vtk_write_cell_dataf,(pvtk, 14150a96aa3bSJed Brown 1, /* write tree */ 14160a96aa3bSJed Brown 1, /* write level */ 14170a96aa3bSJed Brown 1, /* write rank */ 14180a96aa3bSJed Brown 0, /* do not wrap rank */ 14190a96aa3bSJed Brown 0, /* no scalar fields */ 14200a96aa3bSJed Brown 0, /* no vector fields */ 14210a96aa3bSJed Brown pvtk)); 142228b400f6SJacob Faibussowitsch PetscCheck(pvtk,PetscObjectComm((PetscObject)odm),PETSC_ERR_LIB,P4EST_STRING "_vtk_write_cell_dataf() failed"); 14230a96aa3bSJed Brown PetscStackCallP4estReturn(footerr,p4est_vtk_write_footer,(pvtk)); 142428b400f6SJacob Faibussowitsch PetscCheck(!footerr,PetscObjectComm((PetscObject)odm),PETSC_ERR_LIB,P4EST_STRING "_vtk_write_footer() failed"); 14250a96aa3bSJed Brown } 14260a96aa3bSJed Brown if (!pforest->topo->geom) PetscStackCallP4est(p4est_geometry_destroy,(geom)); 14279566063dSJacob Faibussowitsch PetscCall(PetscFree(filenameStrip)); 14280a96aa3bSJed Brown break; 142998921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]); 14300a96aa3bSJed Brown } 14310a96aa3bSJed Brown PetscFunctionReturn(0); 14320a96aa3bSJed Brown } 14330a96aa3bSJed Brown 14340a96aa3bSJed Brown #define DMView_HDF5_pforest _append_pforest(DMView_HDF5) 14350a96aa3bSJed Brown static PetscErrorCode DMView_HDF5_pforest(DM dm, PetscViewer viewer) 14360a96aa3bSJed Brown { 14370a96aa3bSJed Brown DM plex; 14380a96aa3bSJed Brown 14390a96aa3bSJed Brown PetscFunctionBegin; 14409566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 14419566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 14429566063dSJacob Faibussowitsch PetscCall(DMView(plex, viewer)); 14430a96aa3bSJed Brown PetscFunctionReturn(0); 14440a96aa3bSJed Brown } 14450a96aa3bSJed Brown 14460a96aa3bSJed Brown #define DMView_GLVis_pforest _append_pforest(DMView_GLVis) 14470a96aa3bSJed Brown static PetscErrorCode DMView_GLVis_pforest(DM dm, PetscViewer viewer) 14480a96aa3bSJed Brown { 14490a96aa3bSJed Brown DM plex; 14500a96aa3bSJed Brown 14510a96aa3bSJed Brown PetscFunctionBegin; 14529566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 14539566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 14549566063dSJacob Faibussowitsch PetscCall(DMView(plex, viewer)); 14550a96aa3bSJed Brown PetscFunctionReturn(0); 14560a96aa3bSJed Brown } 14570a96aa3bSJed Brown 14580a96aa3bSJed Brown #define DMView_pforest _append_pforest(DMView) 14590a96aa3bSJed Brown static PetscErrorCode DMView_pforest(DM dm, PetscViewer viewer) 14600a96aa3bSJed Brown { 14610a96aa3bSJed Brown PetscBool isascii, isvtk, ishdf5, isglvis; 14620a96aa3bSJed Brown 14630a96aa3bSJed Brown PetscFunctionBegin; 14640a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14650a96aa3bSJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 14669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERASCII, &isascii)); 14679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 14689566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 14699566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERGLVIS, &isglvis)); 14700a96aa3bSJed Brown if (isascii) { 14719566063dSJacob Faibussowitsch PetscCall(DMView_ASCII_pforest((PetscObject) dm,viewer)); 14720a96aa3bSJed Brown } else if (isvtk) { 14739566063dSJacob Faibussowitsch PetscCall(DMView_VTK_pforest((PetscObject) dm,viewer)); 14740a96aa3bSJed Brown } else if (ishdf5) { 14759566063dSJacob Faibussowitsch PetscCall(DMView_HDF5_pforest(dm, viewer)); 14760a96aa3bSJed Brown } else if (isglvis) { 14779566063dSJacob Faibussowitsch PetscCall(DMView_GLVis_pforest(dm, viewer)); 14780a96aa3bSJed Brown } else SETERRQ(PetscObjectComm((PetscObject) dm),PETSC_ERR_SUP,"Viewer not supported (not VTK, HDF5, or GLVis)"); 14790a96aa3bSJed Brown PetscFunctionReturn(0); 14800a96aa3bSJed Brown } 14810a96aa3bSJed Brown 14820a96aa3bSJed Brown static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t *conn, PetscInt **tree_face_to_uniq) 14830a96aa3bSJed Brown { 14840a96aa3bSJed Brown PetscInt *ttf, f, t, g, count; 14850a96aa3bSJed Brown PetscInt numFacets; 14860a96aa3bSJed Brown 14870a96aa3bSJed Brown PetscFunctionBegin; 14880a96aa3bSJed Brown numFacets = conn->num_trees * P4EST_FACES; 14899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFacets,&ttf)); 14900a96aa3bSJed Brown for (f = 0; f < numFacets; f++) ttf[f] = -1; 14910a96aa3bSJed Brown for (g = 0, count = 0, t = 0; t < conn->num_trees; t++) { 14920a96aa3bSJed Brown for (f = 0; f < P4EST_FACES; f++, g++) { 14930a96aa3bSJed Brown if (ttf[g] == -1) { 14940a96aa3bSJed Brown PetscInt ng; 14950a96aa3bSJed Brown 14960a96aa3bSJed Brown ttf[g] = count++; 14970a96aa3bSJed Brown ng = conn->tree_to_tree[g] * P4EST_FACES + (conn->tree_to_face[g] % P4EST_FACES); 14980a96aa3bSJed Brown ttf[ng] = ttf[g]; 14990a96aa3bSJed Brown } 15000a96aa3bSJed Brown } 15010a96aa3bSJed Brown } 15020a96aa3bSJed Brown *tree_face_to_uniq = ttf; 15030a96aa3bSJed Brown PetscFunctionReturn(0); 15040a96aa3bSJed Brown } 15050a96aa3bSJed Brown 15060a96aa3bSJed Brown static PetscErrorCode DMPlexCreateConnectivity_pforest(DM dm, p4est_connectivity_t **connOut, PetscInt **tree_face_to_uniq) 15070a96aa3bSJed Brown { 15080a96aa3bSJed Brown p4est_topidx_t numTrees, numVerts, numCorns, numCtt; 15090a96aa3bSJed Brown PetscSection ctt; 15100a96aa3bSJed Brown #if defined(P4_TO_P8) 15110a96aa3bSJed Brown p4est_topidx_t numEdges, numEtt; 15120a96aa3bSJed Brown PetscSection ett; 15130a96aa3bSJed Brown PetscInt eStart, eEnd, e, ettSize; 15140a96aa3bSJed Brown PetscInt vertOff = 1 + P4EST_FACES + P8EST_EDGES; 15150a96aa3bSJed Brown PetscInt edgeOff = 1 + P4EST_FACES; 15160a96aa3bSJed Brown #else 15170a96aa3bSJed Brown PetscInt vertOff = 1 + P4EST_FACES; 15180a96aa3bSJed Brown #endif 15190a96aa3bSJed Brown p4est_connectivity_t *conn; 15200a96aa3bSJed Brown PetscInt cStart, cEnd, c, vStart, vEnd, v, fStart, fEnd, f; 15210a96aa3bSJed Brown PetscInt *star = NULL, *closure = NULL, closureSize, starSize, cttSize; 15220a96aa3bSJed Brown PetscInt *ttf; 15230a96aa3bSJed Brown 15240a96aa3bSJed Brown PetscFunctionBegin; 15250a96aa3bSJed Brown /* 1: count objects, allocate */ 15269566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm,0,&cStart,&cEnd)); 15279566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(cEnd-cStart,&numTrees)); 15280a96aa3bSJed Brown numVerts = P4EST_CHILDREN * numTrees; 15299566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,0,&vStart,&vEnd)); 15309566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(vEnd-vStart,&numCorns)); 15319566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF,&ctt)); 15329566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ctt,vStart,vEnd)); 15330a96aa3bSJed Brown for (v = vStart; v < vEnd; v++) { 15340a96aa3bSJed Brown PetscInt s; 15350a96aa3bSJed Brown 15369566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm,v,PETSC_FALSE,&starSize,&star)); 15370a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 15380a96aa3bSJed Brown PetscInt p = star[2*s]; 15390a96aa3bSJed Brown 15400a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 15410a96aa3bSJed Brown /* we want to count every time cell p references v, so we see how many times it comes up in the closure. This 15420a96aa3bSJed Brown * only protects against periodicity problems */ 15439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure)); 154463a3b9bcSJacob Faibussowitsch PetscCheck(closureSize == P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Cell %" PetscInt_FMT " with wrong closure size %" PetscInt_FMT " != %d", p, closureSize, P4EST_INSUL); 15450a96aa3bSJed Brown for (c = 0; c < P4EST_CHILDREN; c++) { 15460a96aa3bSJed Brown PetscInt cellVert = closure[2 * (c + vertOff)]; 15470a96aa3bSJed Brown 15481dca8a05SBarry Smith PetscCheck(cellVert >= vStart && cellVert < vEnd,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Non-standard closure: vertices"); 15490a96aa3bSJed Brown if (cellVert == v) { 15509566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ctt,v,1)); 15510a96aa3bSJed Brown } 15520a96aa3bSJed Brown } 15539566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure)); 15540a96aa3bSJed Brown } 15550a96aa3bSJed Brown } 15569566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm,v,PETSC_FALSE,&starSize,&star)); 15570a96aa3bSJed Brown } 15589566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ctt)); 15599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(ctt,&cttSize)); 15609566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(cttSize,&numCtt)); 15610a96aa3bSJed Brown #if defined(P4_TO_P8) 15629566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm,P4EST_DIM-1,&eStart,&eEnd)); 15639566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(eEnd-eStart,&numEdges)); 15649566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF,&ett)); 15659566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ett,eStart,eEnd)); 15660a96aa3bSJed Brown for (e = eStart; e < eEnd; e++) { 15670a96aa3bSJed Brown PetscInt s; 15680a96aa3bSJed Brown 15699566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm,e,PETSC_FALSE,&starSize,&star)); 15700a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 15710a96aa3bSJed Brown PetscInt p = star[2*s]; 15720a96aa3bSJed Brown 15730a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 15740a96aa3bSJed Brown /* we want to count every time cell p references e, so we see how many times it comes up in the closure. This 15750a96aa3bSJed Brown * only protects against periodicity problems */ 15769566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure)); 157708401ef6SPierre Jolivet PetscCheck(closureSize == P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Cell with wrong closure size"); 15780a96aa3bSJed Brown for (c = 0; c < P8EST_EDGES; c++) { 15790a96aa3bSJed Brown PetscInt cellEdge = closure[2 * (c + edgeOff)]; 15800a96aa3bSJed Brown 15811dca8a05SBarry Smith PetscCheck(cellEdge >= eStart && cellEdge < eEnd,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Non-standard closure: edges"); 15820a96aa3bSJed Brown if (cellEdge == e) { 15839566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ett,e,1)); 15840a96aa3bSJed Brown } 15850a96aa3bSJed Brown } 15869566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure)); 15870a96aa3bSJed Brown } 15880a96aa3bSJed Brown } 15899566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm,e,PETSC_FALSE,&starSize,&star)); 15900a96aa3bSJed Brown } 15919566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ett)); 15929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(ett,&ettSize)); 15939566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(ettSize,&numEtt)); 15940a96aa3bSJed Brown 15950a96aa3bSJed Brown /* This routine allocates space for the arrays, which we fill below */ 15960a96aa3bSJed Brown PetscStackCallP4estReturn(conn,p8est_connectivity_new,(numVerts,numTrees,numEdges,numEtt,numCorns,numCtt)); 15970a96aa3bSJed Brown #else 15980a96aa3bSJed Brown PetscStackCallP4estReturn(conn,p4est_connectivity_new,(numVerts,numTrees,numCorns,numCtt)); 15990a96aa3bSJed Brown #endif 16000a96aa3bSJed Brown 16010a96aa3bSJed Brown /* 2: visit every face, determine neighboring cells(trees) */ 16029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm,1,&fStart,&fEnd)); 16039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((cEnd-cStart) * P4EST_FACES,&ttf)); 16040a96aa3bSJed Brown for (f = fStart; f < fEnd; f++) { 16050a96aa3bSJed Brown PetscInt numSupp, s; 16060a96aa3bSJed Brown PetscInt myFace[2] = {-1, -1}; 16070a96aa3bSJed Brown PetscInt myOrnt[2] = {PETSC_MIN_INT, PETSC_MIN_INT}; 16080a96aa3bSJed Brown const PetscInt *supp; 16090a96aa3bSJed Brown 16109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &numSupp)); 16111dca8a05SBarry Smith PetscCheck(numSupp == 1 || numSupp == 2,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"point %" PetscInt_FMT " has facet with %" PetscInt_FMT " sides: must be 1 or 2 (boundary or conformal)",f,numSupp); 16129566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, f, &supp)); 16130a96aa3bSJed Brown 16140a96aa3bSJed Brown for (s = 0; s < numSupp; s++) { 16150a96aa3bSJed Brown PetscInt p = supp[s]; 16160a96aa3bSJed Brown 16170a96aa3bSJed Brown if (p >= cEnd) { 16180a96aa3bSJed Brown numSupp--; 16190a96aa3bSJed Brown if (s) supp = &supp[1 - s]; 16200a96aa3bSJed Brown break; 16210a96aa3bSJed Brown } 16220a96aa3bSJed Brown } 16230a96aa3bSJed Brown for (s = 0; s < numSupp; s++) { 16240a96aa3bSJed Brown PetscInt p = supp[s], i; 16250a96aa3bSJed Brown PetscInt numCone; 16260a96aa3bSJed Brown DMPolytopeType ct; 16270a96aa3bSJed Brown const PetscInt *cone; 16280a96aa3bSJed Brown const PetscInt *ornt; 16290a96aa3bSJed Brown PetscInt orient = PETSC_MIN_INT; 16300a96aa3bSJed Brown 16319566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &numCone)); 163263a3b9bcSJacob Faibussowitsch PetscCheck(numCone == P4EST_FACES,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"cell %" PetscInt_FMT " has %" PetscInt_FMT " facets, expect %d",p,numCone,P4EST_FACES); 16339566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 16349566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[0], &ct)); 16359566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &ornt)); 16360a96aa3bSJed Brown for (i = 0; i < P4EST_FACES; i++) { 16370a96aa3bSJed Brown if (cone[i] == f) { 16380a96aa3bSJed Brown orient = DMPolytopeConvertNewOrientation_Internal(ct, ornt[i]); 16390a96aa3bSJed Brown break; 16400a96aa3bSJed Brown } 16410a96aa3bSJed Brown } 164263a3b9bcSJacob Faibussowitsch PetscCheck(i < P4EST_FACES,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"cell %" PetscInt_FMT " faced %" PetscInt_FMT " mismatch",p,f); 16430a96aa3bSJed Brown if (p < cStart || p >= cEnd) { 16440a96aa3bSJed Brown DMPolytopeType ct; 16459566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 164663a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"cell %" PetscInt_FMT " (%s) should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")",p,DMPolytopeTypes[ct],cStart,cEnd); 16470a96aa3bSJed Brown } 16480a96aa3bSJed Brown ttf[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = f - fStart; 16490a96aa3bSJed Brown if (numSupp == 1) { 16500a96aa3bSJed Brown /* boundary faces indicated by self reference */ 16510a96aa3bSJed Brown conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = p - cStart; 16520a96aa3bSJed Brown conn->tree_to_face[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = (int8_t) PetscFaceToP4estFace[i]; 16530a96aa3bSJed Brown } else { 16540a96aa3bSJed Brown const PetscInt N = P4EST_CHILDREN / 2; 16550a96aa3bSJed Brown 16560a96aa3bSJed Brown conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = supp[1 - s] - cStart; 16570a96aa3bSJed Brown myFace[s] = PetscFaceToP4estFace[i]; 16580a96aa3bSJed Brown /* get the orientation of cell p in p4est-type closure to facet f, by composing the p4est-closure to 16590a96aa3bSJed Brown * petsc-closure permutation and the petsc-closure to facet orientation */ 16600a96aa3bSJed Brown myOrnt[s] = DihedralCompose(N,orient,DMPolytopeConvertNewOrientation_Internal(ct, P4estFaceToPetscOrnt[myFace[s]])); 16610a96aa3bSJed Brown } 16620a96aa3bSJed Brown } 16630a96aa3bSJed Brown if (numSupp == 2) { 16640a96aa3bSJed Brown for (s = 0; s < numSupp; s++) { 16650a96aa3bSJed Brown PetscInt p = supp[s]; 16660a96aa3bSJed Brown PetscInt orntAtoB; 16670a96aa3bSJed Brown PetscInt p4estOrient; 16680a96aa3bSJed Brown const PetscInt N = P4EST_CHILDREN / 2; 16690a96aa3bSJed Brown 16700a96aa3bSJed Brown /* composing the forward permutation with the other cell's inverse permutation gives the self-to-neighbor 16710a96aa3bSJed Brown * permutation of this cell-facet's cone */ 16720a96aa3bSJed Brown orntAtoB = DihedralCompose(N,DihedralInvert(N,myOrnt[1-s]),myOrnt[s]); 16730a96aa3bSJed Brown 16740a96aa3bSJed Brown /* convert cone-description permutation (i.e., edges around facet) to cap-description permutation (i.e., 16750a96aa3bSJed Brown * vertices around facet) */ 16760a96aa3bSJed Brown #if !defined(P4_TO_P8) 16770a96aa3bSJed Brown p4estOrient = orntAtoB < 0 ? -(orntAtoB + 1) : orntAtoB; 16780a96aa3bSJed Brown #else 16790a96aa3bSJed Brown { 16800a96aa3bSJed Brown PetscInt firstVert = orntAtoB < 0 ? ((-orntAtoB) % N) : orntAtoB; 16810a96aa3bSJed Brown PetscInt p4estFirstVert = firstVert < 2 ? firstVert : (firstVert ^ 1); 16820a96aa3bSJed Brown 16830a96aa3bSJed Brown /* swap bits */ 16840a96aa3bSJed Brown p4estOrient = ((myFace[s] <= myFace[1 - s]) || (orntAtoB < 0)) ? p4estFirstVert : ((p4estFirstVert >> 1) | ((p4estFirstVert & 1) << 1)); 16850a96aa3bSJed Brown } 16860a96aa3bSJed Brown #endif 16870a96aa3bSJed Brown /* encode neighbor face and orientation in tree_to_face per p4est_connectivity standard (see 16880a96aa3bSJed Brown * p4est_connectivity.h, p8est_connectivity.h) */ 16890a96aa3bSJed Brown conn->tree_to_face[P4EST_FACES * (p - cStart) + myFace[s]] = (int8_t) myFace[1 - s] + p4estOrient * P4EST_FACES; 16900a96aa3bSJed Brown } 16910a96aa3bSJed Brown } 16920a96aa3bSJed Brown } 16930a96aa3bSJed Brown 16940a96aa3bSJed Brown #if defined(P4_TO_P8) 16950a96aa3bSJed Brown /* 3: visit every edge */ 16960a96aa3bSJed Brown conn->ett_offset[0] = 0; 16970a96aa3bSJed Brown for (e = eStart; e < eEnd; e++) { 16980a96aa3bSJed Brown PetscInt off, s; 16990a96aa3bSJed Brown 17009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(ett,e,&off)); 17010a96aa3bSJed Brown conn->ett_offset[e - eStart] = (p4est_topidx_t) off; 17029566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm,e,PETSC_FALSE,&starSize,&star)); 17030a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 17040a96aa3bSJed Brown PetscInt p = star[2 * s]; 17050a96aa3bSJed Brown 17060a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 17079566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure)); 170808401ef6SPierre Jolivet PetscCheck(closureSize == P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Non-standard closure"); 17090a96aa3bSJed Brown for (c = 0; c < P8EST_EDGES; c++) { 17100a96aa3bSJed Brown PetscInt cellEdge = closure[2 * (c + edgeOff)]; 17110a96aa3bSJed Brown PetscInt cellOrnt = closure[2 * (c + edgeOff) + 1]; 17120a96aa3bSJed Brown DMPolytopeType ct; 17130a96aa3bSJed Brown 17149566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cellEdge, &ct)); 17150a96aa3bSJed Brown cellOrnt = DMPolytopeConvertNewOrientation_Internal(ct, cellOrnt); 17160a96aa3bSJed Brown if (cellEdge == e) { 17170a96aa3bSJed Brown PetscInt p4estEdge = PetscEdgeToP4estEdge[c]; 17180a96aa3bSJed Brown PetscInt totalOrient; 17190a96aa3bSJed Brown 17200a96aa3bSJed Brown /* compose p4est-closure to petsc-closure permutation and petsc-closure to edge orientation */ 17210a96aa3bSJed Brown totalOrient = DihedralCompose(2,cellOrnt,DMPolytopeConvertNewOrientation_Internal(DM_POLYTOPE_SEGMENT, P4estEdgeToPetscOrnt[p4estEdge])); 17220a96aa3bSJed Brown /* p4est orientations are positive: -2 => 1, -1 => 0 */ 17230a96aa3bSJed Brown totalOrient = (totalOrient < 0) ? -(totalOrient + 1) : totalOrient; 17240a96aa3bSJed Brown conn->edge_to_tree[off] = (p4est_locidx_t) (p - cStart); 17250a96aa3bSJed Brown /* encode cell-edge and orientation in edge_to_edge per p8est_connectivity standart (see 17260a96aa3bSJed Brown * p8est_connectivity.h) */ 17270a96aa3bSJed Brown conn->edge_to_edge[off++] = (int8_t) p4estEdge + P8EST_EDGES * totalOrient; 17280a96aa3bSJed Brown conn->tree_to_edge[P8EST_EDGES * (p - cStart) + p4estEdge] = e - eStart; 17290a96aa3bSJed Brown } 17300a96aa3bSJed Brown } 17319566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure)); 17320a96aa3bSJed Brown } 17330a96aa3bSJed Brown } 17349566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm,e,PETSC_FALSE,&starSize,&star)); 17350a96aa3bSJed Brown } 17369566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&ett)); 17370a96aa3bSJed Brown #endif 17380a96aa3bSJed Brown 17390a96aa3bSJed Brown /* 4: visit every vertex */ 17400a96aa3bSJed Brown conn->ctt_offset[0] = 0; 17410a96aa3bSJed Brown for (v = vStart; v < vEnd; v++) { 17420a96aa3bSJed Brown PetscInt off, s; 17430a96aa3bSJed Brown 17449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(ctt,v,&off)); 17450a96aa3bSJed Brown conn->ctt_offset[v - vStart] = (p4est_topidx_t) off; 17469566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm,v,PETSC_FALSE,&starSize,&star)); 17470a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 17480a96aa3bSJed Brown PetscInt p = star[2 * s]; 17490a96aa3bSJed Brown 17500a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 17519566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure)); 175208401ef6SPierre Jolivet PetscCheck(closureSize == P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Non-standard closure"); 17530a96aa3bSJed Brown for (c = 0; c < P4EST_CHILDREN; c++) { 17540a96aa3bSJed Brown PetscInt cellVert = closure[2 * (c + vertOff)]; 17550a96aa3bSJed Brown 17560a96aa3bSJed Brown if (cellVert == v) { 17570a96aa3bSJed Brown PetscInt p4estVert = PetscVertToP4estVert[c]; 17580a96aa3bSJed Brown 17590a96aa3bSJed Brown conn->corner_to_tree[off] = (p4est_locidx_t) (p - cStart); 17600a96aa3bSJed Brown conn->corner_to_corner[off++] = (int8_t) p4estVert; 17610a96aa3bSJed Brown conn->tree_to_corner[P4EST_CHILDREN * (p - cStart) + p4estVert] = v - vStart; 17620a96aa3bSJed Brown } 17630a96aa3bSJed Brown } 17649566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure)); 17650a96aa3bSJed Brown } 17660a96aa3bSJed Brown } 17679566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm,v,PETSC_FALSE,&starSize,&star)); 17680a96aa3bSJed Brown } 17699566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&ctt)); 17700a96aa3bSJed Brown 17710a96aa3bSJed Brown /* 5: Compute the coordinates */ 17720a96aa3bSJed Brown { 17730a96aa3bSJed Brown PetscInt coordDim; 17740a96aa3bSJed Brown Vec coordVec; 17750a96aa3bSJed Brown PetscSection coordSec; 17760a96aa3bSJed Brown PetscBool localized; 17770a96aa3bSJed Brown 17789566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 17799566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordVec)); 17809566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocalizedLocal(dm, &localized)); 17819566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSec)); 17820a96aa3bSJed Brown for (c = cStart; c < cEnd; c++) { 17830a96aa3bSJed Brown PetscInt dof; 17840a96aa3bSJed Brown PetscScalar *cellCoords = NULL; 17850a96aa3bSJed Brown 17869566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, coordSec, coordVec, c, &dof, &cellCoords)); 17871dca8a05SBarry Smith PetscCheck(localized || dof == P4EST_CHILDREN * coordDim,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Need coordinates at the corners: (dof) %" PetscInt_FMT " != %d * %" PetscInt_FMT " (sdim)", dof, P4EST_CHILDREN, coordDim); 17880a96aa3bSJed Brown for (v = 0; v < P4EST_CHILDREN; v++) { 17890a96aa3bSJed Brown PetscInt i, lim = PetscMin(3, coordDim); 17900a96aa3bSJed Brown PetscInt p4estVert = PetscVertToP4estVert[v]; 17910a96aa3bSJed Brown 17920a96aa3bSJed Brown conn->tree_to_vertex[P4EST_CHILDREN * (c - cStart) + v] = P4EST_CHILDREN * (c - cStart) + v; 17930a96aa3bSJed Brown /* p4est vertices are always embedded in R^3 */ 17940a96aa3bSJed Brown for (i = 0; i < 3; i++) conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = 0.; 17950a96aa3bSJed Brown for (i = 0; i < lim; i++) conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = PetscRealPart(cellCoords[v * coordDim + i]); 17960a96aa3bSJed Brown } 17979566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, coordSec, coordVec, c, &dof, &cellCoords)); 17980a96aa3bSJed Brown } 17990a96aa3bSJed Brown } 18000a96aa3bSJed Brown 18010a96aa3bSJed Brown #if defined(P4EST_ENABLE_DEBUG) 180208401ef6SPierre Jolivet PetscCheck(p4est_connectivity_is_valid(conn),PETSC_COMM_SELF,PETSC_ERR_PLIB,"Plex to p4est conversion failed"); 18030a96aa3bSJed Brown #endif 18040a96aa3bSJed Brown 18050a96aa3bSJed Brown *connOut = conn; 18060a96aa3bSJed Brown 18070a96aa3bSJed Brown *tree_face_to_uniq = ttf; 18080a96aa3bSJed Brown 18090a96aa3bSJed Brown PetscFunctionReturn(0); 18100a96aa3bSJed Brown } 18110a96aa3bSJed Brown 18120a96aa3bSJed Brown static PetscErrorCode locidx_to_PetscInt(sc_array_t * array) 18130a96aa3bSJed Brown { 18140a96aa3bSJed Brown sc_array_t *newarray; 18150a96aa3bSJed Brown size_t zz, count = array->elem_count; 18160a96aa3bSJed Brown 18170a96aa3bSJed Brown PetscFunctionBegin; 181808401ef6SPierre Jolivet PetscCheck(array->elem_size == sizeof(p4est_locidx_t),PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong locidx size"); 18190a96aa3bSJed Brown 18200a96aa3bSJed Brown if (sizeof(p4est_locidx_t) == sizeof(PetscInt)) PetscFunctionReturn(0); 18210a96aa3bSJed Brown 18220a96aa3bSJed Brown newarray = sc_array_new_size (sizeof(PetscInt), array->elem_count); 18230a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 18240a96aa3bSJed Brown p4est_locidx_t il = *((p4est_locidx_t*) sc_array_index (array, zz)); 18250a96aa3bSJed Brown PetscInt *ip = (PetscInt*) sc_array_index (newarray, zz); 18260a96aa3bSJed Brown 18270a96aa3bSJed Brown *ip = (PetscInt) il; 18280a96aa3bSJed Brown } 18290a96aa3bSJed Brown 18300a96aa3bSJed Brown sc_array_reset (array); 18310a96aa3bSJed Brown sc_array_init_size (array, sizeof(PetscInt), count); 18320a96aa3bSJed Brown sc_array_copy (array, newarray); 18330a96aa3bSJed Brown sc_array_destroy (newarray); 18340a96aa3bSJed Brown PetscFunctionReturn(0); 18350a96aa3bSJed Brown } 18360a96aa3bSJed Brown 18370a96aa3bSJed Brown static PetscErrorCode coords_double_to_PetscScalar(sc_array_t * array, PetscInt dim) 18380a96aa3bSJed Brown { 18390a96aa3bSJed Brown sc_array_t *newarray; 18400a96aa3bSJed Brown size_t zz, count = array->elem_count; 18410a96aa3bSJed Brown 18420a96aa3bSJed Brown PetscFunctionBegin; 18431dca8a05SBarry Smith PetscCheck(array->elem_size == 3 * sizeof(double),PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong coordinate size"); 18440a96aa3bSJed Brown #if !defined(PETSC_USE_COMPLEX) 18450a96aa3bSJed Brown if (sizeof(double) == sizeof(PetscScalar) && dim == 3) PetscFunctionReturn(0); 18460a96aa3bSJed Brown #endif 18470a96aa3bSJed Brown 18480a96aa3bSJed Brown newarray = sc_array_new_size (dim * sizeof(PetscScalar), array->elem_count); 18490a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 18500a96aa3bSJed Brown int i; 18510a96aa3bSJed Brown double *id = (double*) sc_array_index (array, zz); 18520a96aa3bSJed Brown PetscScalar *ip = (PetscScalar*) sc_array_index (newarray, zz); 18530a96aa3bSJed Brown 18540a96aa3bSJed Brown for (i = 0; i < dim; i++) ip[i] = 0.; 18550a96aa3bSJed Brown for (i = 0; i < PetscMin(dim,3); i++) ip[i] = (PetscScalar) id[i]; 18560a96aa3bSJed Brown } 18570a96aa3bSJed Brown 18580a96aa3bSJed Brown sc_array_reset (array); 18590a96aa3bSJed Brown sc_array_init_size (array, dim * sizeof(PetscScalar), count); 18600a96aa3bSJed Brown sc_array_copy (array, newarray); 18610a96aa3bSJed Brown sc_array_destroy (newarray); 18620a96aa3bSJed Brown PetscFunctionReturn(0); 18630a96aa3bSJed Brown } 18640a96aa3bSJed Brown 18650a96aa3bSJed Brown static PetscErrorCode locidx_pair_to_PetscSFNode(sc_array_t * array) 18660a96aa3bSJed Brown { 18670a96aa3bSJed Brown sc_array_t *newarray; 18680a96aa3bSJed Brown size_t zz, count = array->elem_count; 18690a96aa3bSJed Brown 18700a96aa3bSJed Brown PetscFunctionBegin; 18711dca8a05SBarry Smith PetscCheck(array->elem_size == 2 * sizeof(p4est_locidx_t),PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong locidx size"); 18720a96aa3bSJed Brown 18730a96aa3bSJed Brown newarray = sc_array_new_size (sizeof(PetscSFNode), array->elem_count); 18740a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 18750a96aa3bSJed Brown p4est_locidx_t *il = (p4est_locidx_t*) sc_array_index (array, zz); 18760a96aa3bSJed Brown PetscSFNode *ip = (PetscSFNode*) sc_array_index (newarray, zz); 18770a96aa3bSJed Brown 18780a96aa3bSJed Brown ip->rank = (PetscInt) il[0]; 18790a96aa3bSJed Brown ip->index = (PetscInt) il[1]; 18800a96aa3bSJed Brown } 18810a96aa3bSJed Brown 18820a96aa3bSJed Brown sc_array_reset (array); 18830a96aa3bSJed Brown sc_array_init_size (array, sizeof(PetscSFNode), count); 18840a96aa3bSJed Brown sc_array_copy (array, newarray); 18850a96aa3bSJed Brown sc_array_destroy (newarray); 18860a96aa3bSJed Brown PetscFunctionReturn(0); 18870a96aa3bSJed Brown } 18880a96aa3bSJed Brown 18890a96aa3bSJed Brown static PetscErrorCode P4estToPlex_Local(p4est_t *p4est, DM * plex) 18900a96aa3bSJed Brown { 18910a96aa3bSJed Brown PetscFunctionBegin; 18920a96aa3bSJed Brown { 18930a96aa3bSJed Brown sc_array_t *points_per_dim = sc_array_new(sizeof(p4est_locidx_t)); 18940a96aa3bSJed Brown sc_array_t *cone_sizes = sc_array_new(sizeof(p4est_locidx_t)); 18950a96aa3bSJed Brown sc_array_t *cones = sc_array_new(sizeof(p4est_locidx_t)); 18960a96aa3bSJed Brown sc_array_t *cone_orientations = sc_array_new(sizeof(p4est_locidx_t)); 18970a96aa3bSJed Brown sc_array_t *coords = sc_array_new(3 * sizeof(double)); 18980a96aa3bSJed Brown sc_array_t *children = sc_array_new(sizeof(p4est_locidx_t)); 18990a96aa3bSJed Brown sc_array_t *parents = sc_array_new(sizeof(p4est_locidx_t)); 19000a96aa3bSJed Brown sc_array_t *childids = sc_array_new(sizeof(p4est_locidx_t)); 19010a96aa3bSJed Brown sc_array_t *leaves = sc_array_new(sizeof(p4est_locidx_t)); 19020a96aa3bSJed Brown sc_array_t *remotes = sc_array_new(2 * sizeof(p4est_locidx_t)); 19030a96aa3bSJed Brown p4est_locidx_t first_local_quad; 19040a96aa3bSJed Brown 19050a96aa3bSJed Brown PetscStackCallP4est(p4est_get_plex_data,(p4est,P4EST_CONNECT_FULL,0,&first_local_quad,points_per_dim,cone_sizes,cones,cone_orientations,coords,children,parents,childids,leaves,remotes)); 19060a96aa3bSJed Brown 19079566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(points_per_dim)); 19089566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_sizes)); 19099566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cones)); 19109566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_orientations)); 19119566063dSJacob Faibussowitsch PetscCall(coords_double_to_PetscScalar(coords, P4EST_DIM)); 19120a96aa3bSJed Brown 19139566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(PETSC_COMM_SELF,plex)); 19149566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*plex,P4EST_DIM)); 19159566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromDAG(*plex,P4EST_DIM,(PetscInt*)points_per_dim->array,(PetscInt*)cone_sizes->array,(PetscInt*)cones->array,(PetscInt*)cone_orientations->array,(PetscScalar*)coords->array)); 19169566063dSJacob Faibussowitsch PetscCall(DMPlexConvertOldOrientations_Internal(*plex)); 19170a96aa3bSJed Brown sc_array_destroy (points_per_dim); 19180a96aa3bSJed Brown sc_array_destroy (cone_sizes); 19190a96aa3bSJed Brown sc_array_destroy (cones); 19200a96aa3bSJed Brown sc_array_destroy (cone_orientations); 19210a96aa3bSJed Brown sc_array_destroy (coords); 19220a96aa3bSJed Brown sc_array_destroy (children); 19230a96aa3bSJed Brown sc_array_destroy (parents); 19240a96aa3bSJed Brown sc_array_destroy (childids); 19250a96aa3bSJed Brown sc_array_destroy (leaves); 19260a96aa3bSJed Brown sc_array_destroy (remotes); 19270a96aa3bSJed Brown } 19280a96aa3bSJed Brown PetscFunctionReturn(0); 19290a96aa3bSJed Brown } 19300a96aa3bSJed Brown 19310a96aa3bSJed Brown #define DMReferenceTreeGetChildSymmetry_pforest _append_pforest(DMReferenceTreeGetChildSymmetry) 19320a96aa3bSJed Brown static PetscErrorCode DMReferenceTreeGetChildSymmetry_pforest(DM dm, PetscInt parent, PetscInt parentOrientA, PetscInt childOrientA, PetscInt childA, PetscInt parentOrientB, PetscInt *childOrientB,PetscInt *childB) 19330a96aa3bSJed Brown { 19340a96aa3bSJed Brown PetscInt coneSize, dStart, dEnd, vStart, vEnd, dim, ABswap, oAvert, oBvert, ABswapVert; 19350a96aa3bSJed Brown 19360a96aa3bSJed Brown PetscFunctionBegin; 19370a96aa3bSJed Brown if (parentOrientA == parentOrientB) { 19380a96aa3bSJed Brown if (childOrientB) *childOrientB = childOrientA; 19390a96aa3bSJed Brown if (childB) *childB = childA; 19400a96aa3bSJed Brown PetscFunctionReturn(0); 19410a96aa3bSJed Brown } 19429566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,0,&vStart,&vEnd)); 19436aad120cSJose E. Roman if (childA >= vStart && childA < vEnd) { /* vertices (always in the middle) are invariant under rotation */ 19440a96aa3bSJed Brown if (childOrientB) *childOrientB = 0; 19450a96aa3bSJed Brown if (childB) *childB = childA; 19460a96aa3bSJed Brown PetscFunctionReturn(0); 19470a96aa3bSJed Brown } 19480a96aa3bSJed Brown for (dim = 0; dim < 3; dim++) { 19499566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,dim,&dStart,&dEnd)); 19500a96aa3bSJed Brown if (parent >= dStart && parent <= dEnd) break; 19510a96aa3bSJed Brown } 195263a3b9bcSJacob Faibussowitsch PetscCheck(dim <= 2,PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot perform child symmetry for %" PetscInt_FMT "-cells",dim); 195328b400f6SJacob Faibussowitsch PetscCheck(dim,PETSC_COMM_SELF,PETSC_ERR_PLIB,"A vertex has no children"); 19540a96aa3bSJed Brown if (childA < dStart || childA >= dEnd) { /* a 1-cell in a 2-cell */ 19550a96aa3bSJed Brown /* this is a lower-dimensional child: bootstrap */ 19560a96aa3bSJed Brown PetscInt size, i, sA = -1, sB, sOrientB, sConeSize; 19570a96aa3bSJed Brown const PetscInt *supp, *coneA, *coneB, *oA, *oB; 19580a96aa3bSJed Brown 19599566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm,childA,&size)); 19609566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm,childA,&supp)); 19610a96aa3bSJed Brown 19620a96aa3bSJed Brown /* find a point sA in supp(childA) that has the same parent */ 19630a96aa3bSJed Brown for (i = 0; i < size; i++) { 19640a96aa3bSJed Brown PetscInt sParent; 19650a96aa3bSJed Brown 19660a96aa3bSJed Brown sA = supp[i]; 19670a96aa3bSJed Brown if (sA == parent) continue; 19689566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(dm,sA,&sParent,NULL)); 19690a96aa3bSJed Brown if (sParent == parent) break; 19700a96aa3bSJed Brown } 197108401ef6SPierre Jolivet PetscCheck(i != size,PETSC_COMM_SELF,PETSC_ERR_PLIB,"could not find support in children"); 19720a96aa3bSJed Brown /* find out which point sB is in an equivalent position to sA under 19730a96aa3bSJed Brown * parentOrientB */ 19749566063dSJacob Faibussowitsch PetscCall(DMReferenceTreeGetChildSymmetry_pforest(dm,parent,parentOrientA,0,sA,parentOrientB,&sOrientB,&sB)); 19759566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm,sA,&sConeSize)); 19769566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm,sA,&coneA)); 19779566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm,sB,&coneB)); 19789566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm,sA,&oA)); 19799566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm,sB,&oB)); 19800a96aa3bSJed Brown /* step through the cone of sA in natural order */ 19810a96aa3bSJed Brown for (i = 0; i < sConeSize; i++) { 19820a96aa3bSJed Brown if (coneA[i] == childA) { 19830a96aa3bSJed Brown /* if childA is at position i in coneA, 19840a96aa3bSJed Brown * then we want the point that is at sOrientB*i in coneB */ 19850a96aa3bSJed Brown PetscInt j = (sOrientB >= 0) ? ((sOrientB + i) % sConeSize) : ((sConeSize -(sOrientB+1) - i) % sConeSize); 19860a96aa3bSJed Brown if (childB) *childB = coneB[j]; 19870a96aa3bSJed Brown if (childOrientB) { 19880a96aa3bSJed Brown DMPolytopeType ct; 19890a96aa3bSJed Brown PetscInt oBtrue; 19900a96aa3bSJed Brown 19919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm,childA,&coneSize)); 19920a96aa3bSJed Brown /* compose sOrientB and oB[j] */ 19931dca8a05SBarry Smith PetscCheck(coneSize == 0 || coneSize == 2,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Expected a vertex or an edge"); 19940a96aa3bSJed Brown ct = coneSize ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 19950a96aa3bSJed Brown /* we may have to flip an edge */ 19960a96aa3bSJed Brown oBtrue = (sOrientB >= 0) ? oB[j] : DMPolytopeTypeComposeOrientationInv(ct, -1, oB[j]); 19970a96aa3bSJed Brown oBtrue = DMPolytopeConvertNewOrientation_Internal(ct, oBtrue); 19980a96aa3bSJed Brown ABswap = DihedralSwap(coneSize,DMPolytopeConvertNewOrientation_Internal(ct, oA[i]),oBtrue); 19990a96aa3bSJed Brown *childOrientB = DihedralCompose(coneSize,childOrientA,ABswap); 20000a96aa3bSJed Brown } 20010a96aa3bSJed Brown break; 20020a96aa3bSJed Brown } 20030a96aa3bSJed Brown } 200408401ef6SPierre Jolivet PetscCheck(i != sConeSize,PETSC_COMM_SELF,PETSC_ERR_PLIB,"support cone mismatch"); 20050a96aa3bSJed Brown PetscFunctionReturn(0); 20060a96aa3bSJed Brown } 20070a96aa3bSJed Brown /* get the cone size and symmetry swap */ 20089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm,parent,&coneSize)); 20090a96aa3bSJed Brown ABswap = DihedralSwap(coneSize, parentOrientA, parentOrientB); 20100a96aa3bSJed Brown if (dim == 2) { 20110a96aa3bSJed Brown /* orientations refer to cones: we want them to refer to vertices: 20120a96aa3bSJed Brown * if it's a rotation, they are the same, but if the order is reversed, a 20130a96aa3bSJed Brown * permutation that puts side i first does *not* put vertex i first */ 20140a96aa3bSJed Brown oAvert = (parentOrientA >= 0) ? parentOrientA : -((-parentOrientA % coneSize) + 1); 20150a96aa3bSJed Brown oBvert = (parentOrientB >= 0) ? parentOrientB : -((-parentOrientB % coneSize) + 1); 20160a96aa3bSJed Brown ABswapVert = DihedralSwap(coneSize, oAvert, oBvert); 20170a96aa3bSJed Brown } else { 20180a96aa3bSJed Brown oAvert = parentOrientA; 20190a96aa3bSJed Brown oBvert = parentOrientB; 20200a96aa3bSJed Brown ABswapVert = ABswap; 20210a96aa3bSJed Brown } 20220a96aa3bSJed Brown if (childB) { 20230a96aa3bSJed Brown /* assume that each child corresponds to a vertex, in the same order */ 20240a96aa3bSJed Brown PetscInt p, posA = -1, numChildren, i; 20250a96aa3bSJed Brown const PetscInt *children; 20260a96aa3bSJed Brown 20270a96aa3bSJed Brown /* count which position the child is in */ 20289566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,parent,&numChildren,&children)); 20290a96aa3bSJed Brown for (i = 0; i < numChildren; i++) { 20300a96aa3bSJed Brown p = children[i]; 20310a96aa3bSJed Brown if (p == childA) { 20320a96aa3bSJed Brown if (dim == 1) { 20330a96aa3bSJed Brown posA = i; 20340a96aa3bSJed Brown } else { /* 2D Morton to rotation */ 20350a96aa3bSJed Brown posA = (i & 2) ? (i ^ 1) : i; 20360a96aa3bSJed Brown } 20370a96aa3bSJed Brown break; 20380a96aa3bSJed Brown } 20390a96aa3bSJed Brown } 20400a96aa3bSJed Brown if (posA >= coneSize) { 20410a96aa3bSJed Brown SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find childA in children of parent"); 20420a96aa3bSJed Brown } else { 20430a96aa3bSJed Brown /* figure out position B by applying ABswapVert */ 20440a96aa3bSJed Brown PetscInt posB, childIdB; 20450a96aa3bSJed Brown 20460a96aa3bSJed Brown posB = (ABswapVert >= 0) ? ((ABswapVert + posA) % coneSize) : ((coneSize -(ABswapVert + 1) - posA) % coneSize); 20470a96aa3bSJed Brown if (dim == 1) { 20480a96aa3bSJed Brown childIdB = posB; 20490a96aa3bSJed Brown } else { /* 2D rotation to Morton */ 20500a96aa3bSJed Brown childIdB = (posB & 2) ? (posB ^ 1) : posB; 20510a96aa3bSJed Brown } 20520a96aa3bSJed Brown if (childB) *childB = children[childIdB]; 20530a96aa3bSJed Brown } 20540a96aa3bSJed Brown } 20550a96aa3bSJed Brown if (childOrientB) *childOrientB = DihedralCompose(coneSize,childOrientA,ABswap); 20560a96aa3bSJed Brown PetscFunctionReturn(0); 20570a96aa3bSJed Brown } 20580a96aa3bSJed Brown 20590a96aa3bSJed Brown #define DMCreateReferenceTree_pforest _append_pforest(DMCreateReferenceTree) 20600a96aa3bSJed Brown static PetscErrorCode DMCreateReferenceTree_pforest(MPI_Comm comm, DM *dm) 20610a96aa3bSJed Brown { 20620a96aa3bSJed Brown p4est_connectivity_t *refcube; 20630a96aa3bSJed Brown p4est_t *root, *refined; 20640a96aa3bSJed Brown DM dmRoot, dmRefined; 20650a96aa3bSJed Brown DM_Plex *mesh; 20660a96aa3bSJed Brown PetscMPIInt rank; 20670a96aa3bSJed Brown 20680a96aa3bSJed Brown PetscFunctionBegin; 20690a96aa3bSJed Brown PetscStackCallP4estReturn(refcube,p4est_connectivity_new_byname,("unit")); 20700a96aa3bSJed Brown { /* [-1,1]^d geometry */ 20710a96aa3bSJed Brown PetscInt i, j; 20720a96aa3bSJed Brown 20730a96aa3bSJed Brown for (i = 0; i < P4EST_CHILDREN; i++) { 20740a96aa3bSJed Brown for (j = 0; j < 3; j++) { 20750a96aa3bSJed Brown refcube->vertices[3 * i + j] *= 2.; 20760a96aa3bSJed Brown refcube->vertices[3 * i + j] -= 1.; 20770a96aa3bSJed Brown } 20780a96aa3bSJed Brown } 20790a96aa3bSJed Brown } 20800a96aa3bSJed Brown PetscStackCallP4estReturn(root,p4est_new,(PETSC_COMM_SELF,refcube,0,NULL,NULL)); 20810a96aa3bSJed Brown PetscStackCallP4estReturn(refined,p4est_new_ext,(PETSC_COMM_SELF,refcube,0,1,1,0,NULL,NULL)); 20829566063dSJacob Faibussowitsch PetscCall(P4estToPlex_Local(root,&dmRoot)); 20839566063dSJacob Faibussowitsch PetscCall(P4estToPlex_Local(refined,&dmRefined)); 20840a96aa3bSJed Brown { 20850a96aa3bSJed Brown #if !defined(P4_TO_P8) 20860a96aa3bSJed Brown PetscInt nPoints = 25; 20870a96aa3bSJed Brown PetscInt perm[25] = {0, 1, 2, 3, 20880a96aa3bSJed Brown 4, 12, 8, 14, 20890a96aa3bSJed Brown 6, 9, 15, 20900a96aa3bSJed Brown 5, 13, 10, 20910a96aa3bSJed Brown 7, 11, 20920a96aa3bSJed Brown 16, 22, 20, 24, 20930a96aa3bSJed Brown 17, 21, 20940a96aa3bSJed Brown 18, 23, 20950a96aa3bSJed Brown 19}; 20960a96aa3bSJed Brown PetscInt ident[25] = {0, 0, 0, 0, 20970a96aa3bSJed Brown 1, 1, 2, 2, 3, 3, 4, 4, 0, 0, 0, 0, 20980a96aa3bSJed Brown 5, 6, 7, 8, 1, 2, 3, 4, 0}; 20990a96aa3bSJed Brown #else 21000a96aa3bSJed Brown PetscInt nPoints = 125; 21010a96aa3bSJed Brown PetscInt perm[125] = {0, 1, 2, 3, 4, 5, 6, 7, 21020a96aa3bSJed Brown 8, 32, 16, 36, 24, 40, 21030a96aa3bSJed Brown 12, 17, 37, 25, 41, 21040a96aa3bSJed Brown 9, 33, 20, 26, 42, 21050a96aa3bSJed Brown 13, 21, 27, 43, 21060a96aa3bSJed Brown 10, 34, 18, 38, 28, 21070a96aa3bSJed Brown 14, 19, 39, 29, 21080a96aa3bSJed Brown 11, 35, 22, 30, 21090a96aa3bSJed Brown 15, 23, 31, 21100a96aa3bSJed Brown 44, 84, 76, 92, 52, 86, 68, 94, 60, 78, 70, 96, 21110a96aa3bSJed Brown 45, 85, 77, 93, 54, 72, 62, 74, 21120a96aa3bSJed Brown 46, 80, 53, 87, 69, 95, 64, 82, 21130a96aa3bSJed Brown 47, 81, 55, 73, 66, 21140a96aa3bSJed Brown 48, 88, 56, 90, 61, 79, 71, 97, 21150a96aa3bSJed Brown 49, 89, 58, 63, 75, 21160a96aa3bSJed Brown 50, 57, 91, 65, 83, 21170a96aa3bSJed Brown 51, 59, 67, 21180a96aa3bSJed Brown 98, 106, 110, 122, 114, 120, 118, 124, 21190a96aa3bSJed Brown 99, 111, 115, 119, 21200a96aa3bSJed Brown 100, 107, 116, 121, 21210a96aa3bSJed Brown 101, 117, 21220a96aa3bSJed Brown 102, 108, 112, 123, 21230a96aa3bSJed Brown 103, 113, 21240a96aa3bSJed Brown 104, 109, 21250a96aa3bSJed Brown 105}; 21260a96aa3bSJed Brown PetscInt ident[125] = {0, 0, 0, 0, 0, 0, 0, 0, 21270a96aa3bSJed Brown 1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6, 21280a96aa3bSJed Brown 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 21290a96aa3bSJed Brown 7, 7, 8, 8, 9, 9, 10, 10, 11, 11, 12, 12, 13, 13, 14, 14, 15, 15, 16, 16, 17, 17, 18, 18, 21300a96aa3bSJed Brown 1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6, 21310a96aa3bSJed Brown 0, 0, 0, 0, 0, 0, 21320a96aa3bSJed Brown 19, 20, 21, 22, 23, 24, 25, 26, 21330a96aa3bSJed Brown 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 21340a96aa3bSJed Brown 1, 2, 3, 4, 5, 6, 21350a96aa3bSJed Brown 0}; 21360a96aa3bSJed Brown 21370a96aa3bSJed Brown #endif 21380a96aa3bSJed Brown IS permIS; 21390a96aa3bSJed Brown DM dmPerm; 21400a96aa3bSJed Brown 21419566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF,nPoints,perm,PETSC_USE_POINTER,&permIS)); 21429566063dSJacob Faibussowitsch PetscCall(DMPlexPermute(dmRefined,permIS,&dmPerm)); 21430a96aa3bSJed Brown if (dmPerm) { 21449566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRefined)); 21450a96aa3bSJed Brown dmRefined = dmPerm; 21460a96aa3bSJed Brown } 21479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&permIS)); 21480a96aa3bSJed Brown { 21490a96aa3bSJed Brown PetscInt p; 21509566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmRoot,"identity")); 21519566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmRefined,"identity")); 21520a96aa3bSJed Brown for (p = 0; p < P4EST_INSUL; p++) { 21539566063dSJacob Faibussowitsch PetscCall(DMSetLabelValue(dmRoot,"identity",p,p)); 21540a96aa3bSJed Brown } 21550a96aa3bSJed Brown for (p = 0; p < nPoints; p++) { 21569566063dSJacob Faibussowitsch PetscCall(DMSetLabelValue(dmRefined,"identity",p,ident[p])); 21570a96aa3bSJed Brown } 21580a96aa3bSJed Brown } 21590a96aa3bSJed Brown } 21609566063dSJacob Faibussowitsch PetscCall(DMPlexCreateReferenceTree_Union(dmRoot,dmRefined,"identity",dm)); 21610a96aa3bSJed Brown mesh = (DM_Plex*) (*dm)->data; 21620a96aa3bSJed Brown mesh->getchildsymmetry = DMReferenceTreeGetChildSymmetry_pforest; 21639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 21640a96aa3bSJed Brown if (rank == 0) { 21659566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmRoot, NULL,"-dm_p4est_ref_root_view")); 21669566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmRefined,NULL,"-dm_p4est_ref_refined_view")); 21679566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmRefined,NULL,"-dm_p4est_ref_tree_view")); 21680a96aa3bSJed Brown } 21699566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRefined)); 21709566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRoot)); 21710a96aa3bSJed Brown PetscStackCallP4est(p4est_destroy,(refined)); 21720a96aa3bSJed Brown PetscStackCallP4est(p4est_destroy,(root)); 21730a96aa3bSJed Brown PetscStackCallP4est(p4est_connectivity_destroy,(refcube)); 21740a96aa3bSJed Brown PetscFunctionReturn(0); 21750a96aa3bSJed Brown } 21760a96aa3bSJed Brown 21770a96aa3bSJed Brown static PetscErrorCode DMShareDiscretization(DM dmA, DM dmB) 21780a96aa3bSJed Brown { 21790a96aa3bSJed Brown void *ctx; 21800a96aa3bSJed Brown PetscInt num; 21810a96aa3bSJed Brown PetscReal val; 21820a96aa3bSJed Brown 21830a96aa3bSJed Brown PetscFunctionBegin; 21849566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dmA,&ctx)); 21859566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(dmB,ctx)); 21869566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dmA,dmB)); 21879566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dmA,&num,&val)); 21889566063dSJacob Faibussowitsch PetscCall(DMSetOutputSequenceNumber(dmB,num,val)); 21890a96aa3bSJed Brown if (dmB->localSection != dmA->localSection || dmB->globalSection != dmA->globalSection) { 21909566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(dmB)); 21919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->localSection)); 21929566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(dmB->localSection))); 21930a96aa3bSJed Brown dmB->localSection = dmA->localSection; 21949566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(dmB)); 21959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->globalSection)); 21969566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(dmB->globalSection))); 21970a96aa3bSJed Brown dmB->globalSection = dmA->globalSection; 21989566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.section)); 21999566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(dmB->defaultConstraint.section))); 22003b8ba7d1SJed Brown dmB->defaultConstraint.section = dmA->defaultConstraint.section; 22019566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.mat)); 22029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(dmB->defaultConstraint.mat))); 22033b8ba7d1SJed Brown dmB->defaultConstraint.mat = dmA->defaultConstraint.mat; 22049566063dSJacob Faibussowitsch if (dmA->map) PetscCall(PetscLayoutReference(dmA->map, &dmB->map)); 22050a96aa3bSJed Brown } 22060a96aa3bSJed Brown if (dmB->sectionSF != dmA->sectionSF) { 22079566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->sectionSF)); 22089566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dmB->sectionSF)); 22090a96aa3bSJed Brown dmB->sectionSF = dmA->sectionSF; 22100a96aa3bSJed Brown } 22110a96aa3bSJed Brown PetscFunctionReturn(0); 22120a96aa3bSJed Brown } 22130a96aa3bSJed Brown 22140a96aa3bSJed Brown /* Get an SF that broadcasts a coarse-cell covering of the local fine cells */ 22150a96aa3bSJed Brown static PetscErrorCode DMPforestGetCellCoveringSF(MPI_Comm comm,p4est_t *p4estC, p4est_t *p4estF, PetscInt cStart, PetscInt cEnd, PetscSF *coveringSF) 22160a96aa3bSJed Brown { 22170a96aa3bSJed Brown PetscInt startF, endF, startC, endC, p, nLeaves; 22180a96aa3bSJed Brown PetscSFNode *leaves; 22190a96aa3bSJed Brown PetscSF sf; 22200a96aa3bSJed Brown PetscInt *recv, *send; 22210a96aa3bSJed Brown PetscMPIInt tag; 22220a96aa3bSJed Brown MPI_Request *recvReqs, *sendReqs; 22230a96aa3bSJed Brown PetscSection section; 22240a96aa3bSJed Brown 22250a96aa3bSJed Brown PetscFunctionBegin; 22269566063dSJacob Faibussowitsch PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize,p4estC->mpirank,p4estF,p4estC,&startC,&endC)); 22279566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2*(endC-startC),&recv,endC-startC,&recvReqs)); 22289566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm,&tag)); 22290a96aa3bSJed Brown for (p = startC; p < endC; p++) { 22300a96aa3bSJed Brown recvReqs[p-startC] = MPI_REQUEST_NULL; /* just in case we don't initiate a receive */ 22310a96aa3bSJed Brown if (p4estC->global_first_quadrant[p] == p4estC->global_first_quadrant[p+1]) { /* empty coarse partition */ 22320a96aa3bSJed Brown recv[2*(p-startC)] = 0; 22330a96aa3bSJed Brown recv[2*(p-startC)+1] = 0; 22340a96aa3bSJed Brown continue; 22350a96aa3bSJed Brown } 22360a96aa3bSJed Brown 22379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(&recv[2*(p-startC)],2,MPIU_INT,p,tag,comm,&recvReqs[p-startC])); 22380a96aa3bSJed Brown } 22399566063dSJacob Faibussowitsch PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize,p4estC->mpirank,p4estC,p4estF,&startF,&endF)); 22409566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2*(endF-startF),&send,endF-startF,&sendReqs)); 22410a96aa3bSJed Brown /* count the quadrants rank will send to each of [startF,endF) */ 22420a96aa3bSJed Brown for (p = startF; p < endF; p++) { 22430a96aa3bSJed Brown p4est_quadrant_t *myFineStart = &p4estF->global_first_position[p]; 22440a96aa3bSJed Brown p4est_quadrant_t *myFineEnd = &p4estF->global_first_position[p+1]; 22450a96aa3bSJed Brown PetscInt tStart = (PetscInt) myFineStart->p.which_tree; 22460a96aa3bSJed Brown PetscInt tEnd = (PetscInt) myFineEnd->p.which_tree; 22470a96aa3bSJed Brown PetscInt firstCell = -1, lastCell = -1; 22480a96aa3bSJed Brown p4est_tree_t *treeStart = &(((p4est_tree_t*) p4estC->trees->array)[tStart]); 22490a96aa3bSJed Brown p4est_tree_t *treeEnd = (size_t) tEnd < p4estC->trees->elem_count ? &(((p4est_tree_t*) p4estC->trees->array)[tEnd]) : NULL; 22500a96aa3bSJed Brown ssize_t overlapIndex; 22510a96aa3bSJed Brown 22520a96aa3bSJed Brown sendReqs[p-startF] = MPI_REQUEST_NULL; /* just in case we don't initiate a send */ 22530a96aa3bSJed Brown if (p4estF->global_first_quadrant[p] == p4estF->global_first_quadrant[p+1]) continue; 22540a96aa3bSJed Brown 22550a96aa3bSJed Brown /* locate myFineStart in (or before) a cell */ 22560a96aa3bSJed Brown if (treeStart->quadrants.elem_count) { 22570a96aa3bSJed Brown PetscStackCallP4estReturn(overlapIndex,sc_array_bsearch,(&(treeStart->quadrants),myFineStart,p4est_quadrant_disjoint)); 22580a96aa3bSJed Brown if (overlapIndex < 0) { 22590a96aa3bSJed Brown firstCell = 0; 22600a96aa3bSJed Brown } else { 22610a96aa3bSJed Brown firstCell = treeStart->quadrants_offset + overlapIndex; 22620a96aa3bSJed Brown } 22630a96aa3bSJed Brown } else { 22640a96aa3bSJed Brown firstCell = 0; 22650a96aa3bSJed Brown } 22660a96aa3bSJed Brown if (treeEnd && treeEnd->quadrants.elem_count) { 22670a96aa3bSJed Brown PetscStackCallP4estReturn(overlapIndex,sc_array_bsearch,(&(treeEnd->quadrants),myFineEnd,p4est_quadrant_disjoint)); 22680a96aa3bSJed Brown if (overlapIndex < 0) { /* all of this local section is overlapped */ 22690a96aa3bSJed Brown lastCell = p4estC->local_num_quadrants; 22700a96aa3bSJed Brown } else { 22710a96aa3bSJed Brown p4est_quadrant_t *container = &(((p4est_quadrant_t*) treeEnd->quadrants.array)[overlapIndex]); 22720a96aa3bSJed Brown p4est_quadrant_t first_desc; 22730a96aa3bSJed Brown int equal; 22740a96aa3bSJed Brown 22750a96aa3bSJed Brown PetscStackCallP4est(p4est_quadrant_first_descendant,(container,&first_desc,P4EST_QMAXLEVEL)); 22760a96aa3bSJed Brown PetscStackCallP4estReturn(equal,p4est_quadrant_is_equal,(myFineEnd,&first_desc)); 22770a96aa3bSJed Brown if (equal) { 22780a96aa3bSJed Brown lastCell = treeEnd->quadrants_offset + overlapIndex; 22790a96aa3bSJed Brown } else { 22800a96aa3bSJed Brown lastCell = treeEnd->quadrants_offset + overlapIndex + 1; 22810a96aa3bSJed Brown } 22820a96aa3bSJed Brown } 22830a96aa3bSJed Brown } else { 22840a96aa3bSJed Brown lastCell = p4estC->local_num_quadrants; 22850a96aa3bSJed Brown } 22860a96aa3bSJed Brown send[2*(p-startF)] = firstCell; 22870a96aa3bSJed Brown send[2*(p-startF)+1] = lastCell - firstCell; 22889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(&send[2*(p-startF)],2,MPIU_INT,p,tag,comm,&sendReqs[p-startF])); 22890a96aa3bSJed Brown } 22909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall((PetscMPIInt)(endC-startC),recvReqs,MPI_STATUSES_IGNORE)); 22919566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF,§ion)); 22929566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(section,startC,endC)); 22930a96aa3bSJed Brown for (p = startC; p < endC; p++) { 22940a96aa3bSJed Brown PetscInt numCells = recv[2*(p-startC)+1]; 22959566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(section,p,numCells)); 22960a96aa3bSJed Brown } 22979566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(section)); 22989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section,&nLeaves)); 22999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves,&leaves)); 23000a96aa3bSJed Brown for (p = startC; p < endC; p++) { 23010a96aa3bSJed Brown PetscInt firstCell = recv[2*(p-startC)]; 23020a96aa3bSJed Brown PetscInt numCells = recv[2*(p-startC)+1]; 23030a96aa3bSJed Brown PetscInt off, i; 23040a96aa3bSJed Brown 23059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section,p,&off)); 23060a96aa3bSJed Brown for (i = 0; i < numCells; i++) { 23070a96aa3bSJed Brown leaves[off+i].rank = p; 23080a96aa3bSJed Brown leaves[off+i].index = firstCell + i; 23090a96aa3bSJed Brown } 23100a96aa3bSJed Brown } 23119566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,&sf)); 23129566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf,cEnd-cStart,nLeaves,NULL,PETSC_OWN_POINTER,leaves,PETSC_OWN_POINTER)); 23139566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ion)); 23149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall((PetscMPIInt)(endF-startF),sendReqs,MPI_STATUSES_IGNORE)); 23159566063dSJacob Faibussowitsch PetscCall(PetscFree2(send,sendReqs)); 23169566063dSJacob Faibussowitsch PetscCall(PetscFree2(recv,recvReqs)); 23170a96aa3bSJed Brown *coveringSF = sf; 23180a96aa3bSJed Brown PetscFunctionReturn(0); 23190a96aa3bSJed Brown } 23200a96aa3bSJed Brown 23210a96aa3bSJed Brown /* closure points for locally-owned cells */ 23220a96aa3bSJed Brown static PetscErrorCode DMPforestGetCellSFNodes(DM dm, PetscInt numClosureIndices, PetscInt *numClosurePoints, PetscSFNode **closurePoints,PetscBool redirect) 23230a96aa3bSJed Brown { 23240a96aa3bSJed Brown PetscInt cStart, cEnd; 23250a96aa3bSJed Brown PetscInt count, c; 23260a96aa3bSJed Brown PetscMPIInt rank; 23270a96aa3bSJed Brown PetscInt closureSize = -1; 23280a96aa3bSJed Brown PetscInt *closure = NULL; 23290a96aa3bSJed Brown PetscSF pointSF; 23300a96aa3bSJed Brown PetscInt nleaves, nroots; 23310a96aa3bSJed Brown const PetscInt *ilocal; 23320a96aa3bSJed Brown const PetscSFNode *iremote; 23330a96aa3bSJed Brown DM plex; 23340a96aa3bSJed Brown DM_Forest *forest; 23350a96aa3bSJed Brown DM_Forest_pforest *pforest; 23360a96aa3bSJed Brown 23370a96aa3bSJed Brown PetscFunctionBegin; 23380a96aa3bSJed Brown forest = (DM_Forest *) dm->data; 23390a96aa3bSJed Brown pforest = (DM_Forest_pforest *) forest->data; 23400a96aa3bSJed Brown cStart = pforest->cLocalStart; 23410a96aa3bSJed Brown cEnd = pforest->cLocalEnd; 23429566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 23439566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm,&pointSF)); 23449566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF,&nroots,&nleaves,&ilocal,&iremote)); 23450a96aa3bSJed Brown nleaves = PetscMax(0,nleaves); 23460a96aa3bSJed Brown nroots = PetscMax(0,nroots); 23470a96aa3bSJed Brown *numClosurePoints = numClosureIndices * (cEnd - cStart); 23489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numClosurePoints,closurePoints)); 23499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank)); 23500a96aa3bSJed Brown for (c = cStart, count = 0; c < cEnd; c++) { 23510a96aa3bSJed Brown PetscInt i; 23529566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex,c,PETSC_TRUE,&closureSize,&closure)); 23530a96aa3bSJed Brown 23540a96aa3bSJed Brown for (i = 0; i < numClosureIndices; i++, count++) { 23550a96aa3bSJed Brown PetscInt p = closure[2 * i]; 23560a96aa3bSJed Brown PetscInt loc = -1; 23570a96aa3bSJed Brown 23589566063dSJacob Faibussowitsch PetscCall(PetscFindInt(p,nleaves,ilocal,&loc)); 23590a96aa3bSJed Brown if (redirect && loc >= 0) { 23600a96aa3bSJed Brown (*closurePoints)[count].rank = iremote[loc].rank; 23610a96aa3bSJed Brown (*closurePoints)[count].index = iremote[loc].index; 23620a96aa3bSJed Brown } else { 23630a96aa3bSJed Brown (*closurePoints)[count].rank = rank; 23640a96aa3bSJed Brown (*closurePoints)[count].index = p; 23650a96aa3bSJed Brown } 23660a96aa3bSJed Brown } 23679566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex,c,PETSC_TRUE,&closureSize,&closure)); 23680a96aa3bSJed Brown } 23690a96aa3bSJed Brown PetscFunctionReturn(0); 23700a96aa3bSJed Brown } 23710a96aa3bSJed Brown 23720a96aa3bSJed Brown static void MPIAPI DMPforestMaxSFNode(void *a, void *b, PetscMPIInt *len, MPI_Datatype *type) 23730a96aa3bSJed Brown { 23740a96aa3bSJed Brown PetscMPIInt i; 23750a96aa3bSJed Brown 23760a96aa3bSJed Brown for (i = 0; i < *len; i++) { 23770a96aa3bSJed Brown PetscSFNode *A = (PetscSFNode*)a; 23780a96aa3bSJed Brown PetscSFNode *B = (PetscSFNode*)b; 23790a96aa3bSJed Brown 23800a96aa3bSJed Brown if (B->rank < 0) *B = *A; 23810a96aa3bSJed Brown } 23820a96aa3bSJed Brown } 23830a96aa3bSJed Brown 23840a96aa3bSJed Brown static PetscErrorCode DMPforestGetTransferSF_Point(DM coarse, DM fine, PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[]) 23850a96aa3bSJed Brown { 23860a96aa3bSJed Brown MPI_Comm comm; 23870a96aa3bSJed Brown PetscMPIInt rank, size; 23880a96aa3bSJed Brown DM_Forest_pforest *pforestC, *pforestF; 23890a96aa3bSJed Brown p4est_t *p4estC, *p4estF; 23900a96aa3bSJed Brown PetscInt numClosureIndices; 23910a96aa3bSJed Brown PetscInt numClosurePointsC, numClosurePointsF; 23920a96aa3bSJed Brown PetscSFNode *closurePointsC, *closurePointsF; 23930a96aa3bSJed Brown p4est_quadrant_t *coverQuads = NULL; 23940a96aa3bSJed Brown p4est_quadrant_t **treeQuads; 23950a96aa3bSJed Brown PetscInt *treeQuadCounts; 23960a96aa3bSJed Brown MPI_Datatype nodeType; 23970a96aa3bSJed Brown MPI_Datatype nodeClosureType; 23980a96aa3bSJed Brown MPI_Op sfNodeReduce; 23990a96aa3bSJed Brown p4est_topidx_t fltF, lltF, t; 24000a96aa3bSJed Brown DM plexC, plexF; 24010a96aa3bSJed Brown PetscInt pStartF, pEndF, pStartC, pEndC; 24020a96aa3bSJed Brown PetscBool saveInCoarse = PETSC_FALSE; 24030a96aa3bSJed Brown PetscBool saveInFine = PETSC_FALSE; 24040a96aa3bSJed Brown PetscBool formCids = (childIds != NULL) ? PETSC_TRUE : PETSC_FALSE; 24050a96aa3bSJed Brown PetscInt *cids = NULL; 24060a96aa3bSJed Brown 24070a96aa3bSJed Brown PetscFunctionBegin; 24080a96aa3bSJed Brown pforestC = (DM_Forest_pforest*) ((DM_Forest*) coarse->data)->data; 24090a96aa3bSJed Brown pforestF = (DM_Forest_pforest*) ((DM_Forest*) fine->data)->data; 24100a96aa3bSJed Brown p4estC = pforestC->forest; 24110a96aa3bSJed Brown p4estF = pforestF->forest; 241208401ef6SPierre Jolivet PetscCheck(pforestC->topo == pforestF->topo,PetscObjectComm((PetscObject)coarse),PETSC_ERR_ARG_INCOMP,"DM's must have the same base DM"); 24130a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)coarse); 24149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 24159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 24169566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(fine,&plexF)); 24179566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexF,&pStartF,&pEndF)); 24189566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(coarse,&plexC)); 24199566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexC,&pStartC,&pEndC)); 24200a96aa3bSJed Brown { /* check if the results have been cached */ 24210a96aa3bSJed Brown DM adaptCoarse, adaptFine; 24220a96aa3bSJed Brown 24239566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(coarse,&adaptCoarse)); 24249566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(fine,&adaptFine)); 24250a96aa3bSJed Brown if (adaptCoarse && adaptCoarse->data == fine->data) { /* coarse is adapted from fine */ 24260a96aa3bSJed Brown if (pforestC->pointSelfToAdaptSF) { 24279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)(pforestC->pointSelfToAdaptSF))); 24280a96aa3bSJed Brown *sf = pforestC->pointSelfToAdaptSF; 24290a96aa3bSJed Brown if (childIds) { 24309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF-pStartF,&cids)); 24319566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(cids,pforestC->pointSelfToAdaptCids,pEndF-pStartF)); 24320a96aa3bSJed Brown *childIds = cids; 24330a96aa3bSJed Brown } 24340a96aa3bSJed Brown PetscFunctionReturn(0); 24350a96aa3bSJed Brown } else { 24360a96aa3bSJed Brown saveInCoarse = PETSC_TRUE; 24370a96aa3bSJed Brown formCids = PETSC_TRUE; 24380a96aa3bSJed Brown } 24390a96aa3bSJed Brown } else if (adaptFine && adaptFine->data == coarse->data) { /* fine is adapted from coarse */ 24400a96aa3bSJed Brown if (pforestF->pointAdaptToSelfSF) { 24419566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)(pforestF->pointAdaptToSelfSF))); 24420a96aa3bSJed Brown *sf = pforestF->pointAdaptToSelfSF; 24430a96aa3bSJed Brown if (childIds) { 24449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF-pStartF,&cids)); 24459566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(cids,pforestF->pointAdaptToSelfCids,pEndF-pStartF)); 24460a96aa3bSJed Brown *childIds = cids; 24470a96aa3bSJed Brown } 24480a96aa3bSJed Brown PetscFunctionReturn(0); 24490a96aa3bSJed Brown } else { 24500a96aa3bSJed Brown saveInFine = PETSC_TRUE; 24510a96aa3bSJed Brown formCids = PETSC_TRUE; 24520a96aa3bSJed Brown } 24530a96aa3bSJed Brown } 24540a96aa3bSJed Brown } 24550a96aa3bSJed Brown 24560a96aa3bSJed Brown /* count the number of closure points that have dofs and create a list */ 24570a96aa3bSJed Brown numClosureIndices = P4EST_INSUL; 24580a96aa3bSJed Brown /* create the datatype */ 24599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(2,MPIU_INT,&nodeType)); 24609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&nodeType)); 24619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(DMPforestMaxSFNode,PETSC_FALSE,&sfNodeReduce)); 24629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(numClosureIndices*2,MPIU_INT,&nodeClosureType)); 24639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&nodeClosureType)); 24640a96aa3bSJed Brown /* everything has to go through cells: for each cell, create a list of the sfnodes in its closure */ 24650a96aa3bSJed Brown /* get lists of closure point SF nodes for every cell */ 24669566063dSJacob Faibussowitsch PetscCall(DMPforestGetCellSFNodes(coarse,numClosureIndices,&numClosurePointsC,&closurePointsC,PETSC_TRUE)); 24679566063dSJacob Faibussowitsch PetscCall(DMPforestGetCellSFNodes(fine ,numClosureIndices,&numClosurePointsF,&closurePointsF,PETSC_FALSE)); 24680a96aa3bSJed Brown /* create pointers for tree lists */ 24690a96aa3bSJed Brown fltF = p4estF->first_local_tree; 24700a96aa3bSJed Brown lltF = p4estF->last_local_tree; 24719566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(lltF + 1 - fltF, &treeQuads, lltF + 1 - fltF, &treeQuadCounts)); 24720a96aa3bSJed Brown /* if the partitions don't match, ship the coarse to cover the fine */ 24730a96aa3bSJed Brown if (size > 1) { 24740a96aa3bSJed Brown PetscInt p; 24750a96aa3bSJed Brown 24760a96aa3bSJed Brown for (p = 0; p < size; p++) { 24770a96aa3bSJed Brown int equal; 24780a96aa3bSJed Brown 24790a96aa3bSJed Brown PetscStackCallP4estReturn(equal,p4est_quadrant_is_equal_piggy,(&p4estC->global_first_position[p],&p4estF->global_first_position[p])); 24800a96aa3bSJed Brown if (!equal) break; 24810a96aa3bSJed Brown } 24820a96aa3bSJed Brown if (p < size) { /* non-matching distribution: send the coarse to cover the fine */ 24830a96aa3bSJed Brown PetscInt cStartC, cEndC; 24840a96aa3bSJed Brown PetscSF coveringSF; 24850a96aa3bSJed Brown PetscInt nleaves; 24860a96aa3bSJed Brown PetscInt count; 24870a96aa3bSJed Brown PetscSFNode *newClosurePointsC; 24880a96aa3bSJed Brown p4est_quadrant_t *coverQuadsSend; 24890a96aa3bSJed Brown p4est_topidx_t fltC = p4estC->first_local_tree; 24900a96aa3bSJed Brown p4est_topidx_t lltC = p4estC->last_local_tree; 24910a96aa3bSJed Brown p4est_topidx_t t; 24920a96aa3bSJed Brown PetscMPIInt blockSizes[4] = {P4EST_DIM,2,1,1}; 24930a96aa3bSJed Brown MPI_Aint blockOffsets[4] = {offsetof(p4est_quadrant_t,x), 24940a96aa3bSJed Brown offsetof(p4est_quadrant_t,level), 24950a96aa3bSJed Brown offsetof(p4est_quadrant_t,pad16), 24960a96aa3bSJed Brown offsetof(p4est_quadrant_t,p)}; 24970a96aa3bSJed Brown MPI_Datatype blockTypes[4] = {MPI_INT32_T,MPI_INT8_T,MPI_INT16_T,MPI_INT32_T/* p.which_tree */}; 24980a96aa3bSJed Brown MPI_Datatype quadStruct,quadType; 24990a96aa3bSJed Brown 25009566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plexC,0,&cStartC,&cEndC)); 25019566063dSJacob Faibussowitsch PetscCall(DMPforestGetCellCoveringSF(comm,p4estC,p4estF,pforestC->cLocalStart,pforestC->cLocalEnd,&coveringSF)); 25029566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coveringSF,NULL,&nleaves,NULL,NULL)); 25039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numClosureIndices*nleaves,&newClosurePointsC)); 25049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves,&coverQuads)); 25059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEndC-cStartC,&coverQuadsSend)); 25060a96aa3bSJed Brown count = 0; 25070a96aa3bSJed Brown for (t = fltC; t <= lltC; t++) { /* unfortunately, we need to pack a send array, since quads are not stored packed in p4est */ 25080a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t*) p4estC->trees->array)[t]); 25090a96aa3bSJed Brown PetscInt q; 25100a96aa3bSJed Brown 25119566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(&coverQuadsSend[count],tree->quadrants.array,tree->quadrants.elem_count * sizeof(p4est_quadrant_t))); 25120a96aa3bSJed Brown for (q = 0; (size_t) q < tree->quadrants.elem_count; q++) coverQuadsSend[count+q].p.which_tree = t; 25130a96aa3bSJed Brown count += tree->quadrants.elem_count; 25140a96aa3bSJed Brown } 25150a96aa3bSJed Brown /* p is of a union type p4est_quadrant_data, but only the p.which_tree field is active at this time. So, we 25160a96aa3bSJed Brown have a simple blockTypes[] to use. Note that quadStruct does not count potential padding in array of 25170a96aa3bSJed Brown p4est_quadrant_t. We have to call MPI_Type_create_resized() to change upper-bound of quadStruct. 25180a96aa3bSJed Brown */ 25199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_struct(4,blockSizes,blockOffsets,blockTypes,&quadStruct)); 25209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(quadStruct,0,sizeof(p4est_quadrant_t),&quadType)); 25219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&quadType)); 25229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coveringSF,nodeClosureType,closurePointsC,newClosurePointsC,MPI_REPLACE)); 25239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coveringSF,quadType,coverQuadsSend,coverQuads,MPI_REPLACE)); 25249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coveringSF,nodeClosureType,closurePointsC,newClosurePointsC,MPI_REPLACE)); 25259566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coveringSF,quadType,coverQuadsSend,coverQuads,MPI_REPLACE)); 25269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&quadStruct)); 25279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&quadType)); 25289566063dSJacob Faibussowitsch PetscCall(PetscFree(coverQuadsSend)); 25299566063dSJacob Faibussowitsch PetscCall(PetscFree(closurePointsC)); 25309566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coveringSF)); 25310a96aa3bSJed Brown closurePointsC = newClosurePointsC; 25320a96aa3bSJed Brown 25330a96aa3bSJed Brown /* assign tree quads based on locations in coverQuads */ 25340a96aa3bSJed Brown { 25350a96aa3bSJed Brown PetscInt q; 25360a96aa3bSJed Brown for (q = 0; q < nleaves; q++) { 25370a96aa3bSJed Brown p4est_locidx_t t = coverQuads[q].p.which_tree; 25380a96aa3bSJed Brown if (!treeQuadCounts[t-fltF]++) treeQuads[t-fltF] = &coverQuads[q]; 25390a96aa3bSJed Brown } 25400a96aa3bSJed Brown } 25410a96aa3bSJed Brown } 25420a96aa3bSJed Brown } 25430a96aa3bSJed Brown if (!coverQuads) { /* matching partitions: assign tree quads based on locations in p4est native arrays */ 25440a96aa3bSJed Brown for (t = fltF; t <= lltF; t++) { 25450a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t*) p4estC->trees->array)[t]); 25460a96aa3bSJed Brown 25470a96aa3bSJed Brown treeQuadCounts[t - fltF] = tree->quadrants.elem_count; 25480a96aa3bSJed Brown treeQuads[t - fltF] = (p4est_quadrant_t*) tree->quadrants.array; 25490a96aa3bSJed Brown } 25500a96aa3bSJed Brown } 25510a96aa3bSJed Brown 25520a96aa3bSJed Brown { 25530a96aa3bSJed Brown PetscInt p; 25540a96aa3bSJed Brown PetscInt cLocalStartF; 25550a96aa3bSJed Brown PetscSF pointSF; 25560a96aa3bSJed Brown PetscSFNode *roots; 25570a96aa3bSJed Brown PetscInt *rootType; 25580a96aa3bSJed Brown DM refTree = NULL; 25590a96aa3bSJed Brown DMLabel canonical; 25600a96aa3bSJed Brown PetscInt *childClosures[P4EST_CHILDREN] = {NULL}; 25610a96aa3bSJed Brown PetscInt *rootClosure = NULL; 25620a96aa3bSJed Brown PetscInt coarseOffset; 25630a96aa3bSJed Brown PetscInt numCoarseQuads; 25640a96aa3bSJed Brown 25659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF-pStartF,&roots)); 25669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF-pStartF,&rootType)); 25679566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(fine,&pointSF)); 25680a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 25690a96aa3bSJed Brown roots[p-pStartF].rank = -1; 25700a96aa3bSJed Brown roots[p-pStartF].index = -1; 25710a96aa3bSJed Brown rootType[p-pStartF] = -1; 25720a96aa3bSJed Brown } 25730a96aa3bSJed Brown if (formCids) { 25740a96aa3bSJed Brown PetscInt child; 25750a96aa3bSJed Brown 25769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF-pStartF,&cids)); 25770a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) cids[p - pStartF] = -2; 25789566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(plexF,&refTree)); 25799566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(refTree,0,PETSC_TRUE,NULL,&rootClosure)); 25800a96aa3bSJed Brown for (child = 0; child < P4EST_CHILDREN; child++) { /* get the closures of the child cells in the reference tree */ 25819566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(refTree,child+1,PETSC_TRUE,NULL,&childClosures[child])); 25820a96aa3bSJed Brown } 25839566063dSJacob Faibussowitsch PetscCall(DMGetLabel(refTree,"canonical",&canonical)); 25840a96aa3bSJed Brown } 25850a96aa3bSJed Brown cLocalStartF = pforestF->cLocalStart; 25860a96aa3bSJed Brown for (t = fltF, coarseOffset = 0, numCoarseQuads = 0; t <= lltF; t++, coarseOffset += numCoarseQuads) { 25870a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t*) p4estF->trees->array)[t]); 25880a96aa3bSJed Brown PetscInt numFineQuads = tree->quadrants.elem_count; 25890a96aa3bSJed Brown p4est_quadrant_t *coarseQuads = treeQuads[t - fltF]; 25900a96aa3bSJed Brown p4est_quadrant_t *fineQuads = (p4est_quadrant_t*) tree->quadrants.array; 25910a96aa3bSJed Brown PetscInt i, coarseCount = 0; 25920a96aa3bSJed Brown PetscInt offset = tree->quadrants_offset; 25930a96aa3bSJed Brown sc_array_t coarseQuadsArray; 25940a96aa3bSJed Brown 25950a96aa3bSJed Brown numCoarseQuads = treeQuadCounts[t - fltF]; 25960a96aa3bSJed Brown PetscStackCallP4est(sc_array_init_data,(&coarseQuadsArray,coarseQuads,sizeof(p4est_quadrant_t),(size_t) numCoarseQuads)); 25970a96aa3bSJed Brown for (i = 0; i < numFineQuads; i++) { 25980a96aa3bSJed Brown PetscInt c = i + offset; 25990a96aa3bSJed Brown p4est_quadrant_t *quad = &fineQuads[i]; 26000a96aa3bSJed Brown p4est_quadrant_t *quadCoarse = NULL; 26010a96aa3bSJed Brown ssize_t disjoint = -1; 26020a96aa3bSJed Brown 26030a96aa3bSJed Brown while (disjoint < 0 && coarseCount < numCoarseQuads) { 26040a96aa3bSJed Brown quadCoarse = &coarseQuads[coarseCount]; 26050a96aa3bSJed Brown PetscStackCallP4estReturn(disjoint,p4est_quadrant_disjoint,(quadCoarse,quad)); 26060a96aa3bSJed Brown if (disjoint < 0) coarseCount++; 26070a96aa3bSJed Brown } 260808401ef6SPierre Jolivet PetscCheck(disjoint == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"did not find overlapping coarse quad"); 26090a96aa3bSJed Brown if (quadCoarse->level > quad->level || (quadCoarse->level == quad->level && !transferIdent)) { /* the "coarse" mesh is finer than the fine mesh at the point: continue */ 26100a96aa3bSJed Brown if (transferIdent) { /* find corners */ 26110a96aa3bSJed Brown PetscInt j = 0; 26120a96aa3bSJed Brown 26130a96aa3bSJed Brown do { 26140a96aa3bSJed Brown if (j < P4EST_CHILDREN) { 26150a96aa3bSJed Brown p4est_quadrant_t cornerQuad; 26160a96aa3bSJed Brown int equal; 26170a96aa3bSJed Brown 26180a96aa3bSJed Brown PetscStackCallP4est(p4est_quadrant_corner_descendant,(quad,&cornerQuad,j,quadCoarse->level)); 26190a96aa3bSJed Brown PetscStackCallP4estReturn(equal,p4est_quadrant_is_equal,(&cornerQuad,quadCoarse)); 26200a96aa3bSJed Brown if (equal) { 26210a96aa3bSJed Brown PetscInt petscJ = P4estVertToPetscVert[j]; 26220a96aa3bSJed Brown PetscInt p = closurePointsF[numClosureIndices * c + (P4EST_INSUL - P4EST_CHILDREN) + petscJ].index; 26230a96aa3bSJed Brown PetscSFNode q = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + (P4EST_INSUL - P4EST_CHILDREN) + petscJ]; 26240a96aa3bSJed Brown 26250a96aa3bSJed Brown roots[p-pStartF] = q; 26260a96aa3bSJed Brown rootType[p-pStartF] = PETSC_MAX_INT; 26270a96aa3bSJed Brown cids[p-pStartF] = -1; 26280a96aa3bSJed Brown j++; 26290a96aa3bSJed Brown } 26300a96aa3bSJed Brown } 26310a96aa3bSJed Brown coarseCount++; 26320a96aa3bSJed Brown disjoint = 1; 26330a96aa3bSJed Brown if (coarseCount < numCoarseQuads) { 26340a96aa3bSJed Brown quadCoarse = &coarseQuads[coarseCount]; 26350a96aa3bSJed Brown PetscStackCallP4estReturn(disjoint,p4est_quadrant_disjoint,(quadCoarse,quad)); 26360a96aa3bSJed Brown } 26370a96aa3bSJed Brown } while (!disjoint); 26380a96aa3bSJed Brown } 26390a96aa3bSJed Brown continue; 26400a96aa3bSJed Brown } 26410a96aa3bSJed Brown if (quadCoarse->level == quad->level) { /* same quad present in coarse and fine mesh */ 26420a96aa3bSJed Brown PetscInt j; 26430a96aa3bSJed Brown for (j = 0; j < numClosureIndices; j++) { 26440a96aa3bSJed Brown PetscInt p = closurePointsF[numClosureIndices * c + j].index; 26450a96aa3bSJed Brown 26460a96aa3bSJed Brown roots[p-pStartF] = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + j]; 26470a96aa3bSJed Brown rootType[p-pStartF] = PETSC_MAX_INT; /* unconditionally accept */ 26480a96aa3bSJed Brown cids[p-pStartF] = -1; 26490a96aa3bSJed Brown } 26500a96aa3bSJed Brown } else { 26510a96aa3bSJed Brown PetscInt levelDiff = quad->level - quadCoarse->level; 26520a96aa3bSJed Brown PetscInt proposedCids[P4EST_INSUL] = {0}; 26530a96aa3bSJed Brown 26540a96aa3bSJed Brown if (formCids) { 26550a96aa3bSJed Brown PetscInt cl; 26560a96aa3bSJed Brown PetscInt *pointClosure = NULL; 26570a96aa3bSJed Brown int cid; 26580a96aa3bSJed Brown 265908401ef6SPierre Jolivet PetscCheck(levelDiff <= 1,PETSC_COMM_SELF,PETSC_ERR_USER,"Recursive child ids not implemented"); 26600a96aa3bSJed Brown PetscStackCallP4estReturn(cid,p4est_quadrant_child_id,(quad)); 26619566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plexF,c + cLocalStartF,PETSC_TRUE,NULL,&pointClosure)); 26620a96aa3bSJed Brown for (cl = 0; cl < P4EST_INSUL; cl++) { 26630a96aa3bSJed Brown PetscInt p = pointClosure[2 * cl]; 26640a96aa3bSJed Brown PetscInt point = childClosures[cid][2 * cl]; 26650a96aa3bSJed Brown PetscInt ornt = childClosures[cid][2 * cl + 1]; 26660a96aa3bSJed Brown PetscInt newcid = -1; 26670a96aa3bSJed Brown DMPolytopeType ct; 26680a96aa3bSJed Brown 26690a96aa3bSJed Brown if (rootType[p-pStartF] == PETSC_MAX_INT) continue; 26709566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(refTree, point, &ct)); 26710a96aa3bSJed Brown ornt = DMPolytopeConvertNewOrientation_Internal(ct, ornt); 26720a96aa3bSJed Brown if (!cl) { 26730a96aa3bSJed Brown newcid = cid + 1; 26740a96aa3bSJed Brown } else { 26750a96aa3bSJed Brown PetscInt rcl, parent, parentOrnt = 0; 26760a96aa3bSJed Brown 26779566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(refTree,point,&parent,NULL)); 26780a96aa3bSJed Brown if (parent == point) { 26790a96aa3bSJed Brown newcid = -1; 26800a96aa3bSJed Brown } else if (!parent) { /* in the root */ 26810a96aa3bSJed Brown newcid = point; 26820a96aa3bSJed Brown } else { 26830a96aa3bSJed Brown DMPolytopeType rct = DM_POLYTOPE_UNKNOWN; 26840a96aa3bSJed Brown 26850a96aa3bSJed Brown for (rcl = 1; rcl < P4EST_INSUL; rcl++) { 26860a96aa3bSJed Brown if (rootClosure[2 * rcl] == parent) { 26879566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(refTree, parent, &rct)); 26880a96aa3bSJed Brown parentOrnt = DMPolytopeConvertNewOrientation_Internal(rct, rootClosure[2 * rcl + 1]); 26890a96aa3bSJed Brown break; 26900a96aa3bSJed Brown } 26910a96aa3bSJed Brown } 269208401ef6SPierre Jolivet PetscCheck(rcl < P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Couldn't find parent in root closure"); 26939566063dSJacob Faibussowitsch PetscCall(DMPlexReferenceTreeGetChildSymmetry(refTree,parent,parentOrnt,ornt,point,DMPolytopeConvertNewOrientation_Internal(rct, pointClosure[2 * rcl + 1]),NULL,&newcid)); 26940a96aa3bSJed Brown } 26950a96aa3bSJed Brown } 26960a96aa3bSJed Brown if (newcid >= 0) { 26970a96aa3bSJed Brown 26980a96aa3bSJed Brown if (canonical) { 26999566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(canonical,newcid,&newcid)); 27000a96aa3bSJed Brown } 27010a96aa3bSJed Brown proposedCids[cl] = newcid; 27020a96aa3bSJed Brown } 27030a96aa3bSJed Brown } 27049566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plexF,c + cLocalStartF,PETSC_TRUE,NULL,&pointClosure)); 27050a96aa3bSJed Brown } 27060a96aa3bSJed Brown p4est_qcoord_t coarseBound[2][P4EST_DIM] = {{quadCoarse->x,quadCoarse->y, 27070a96aa3bSJed Brown #if defined(P4_TO_P8) 27080a96aa3bSJed Brown quadCoarse->z 27090a96aa3bSJed Brown #endif 27100a96aa3bSJed Brown },{0}}; 27110a96aa3bSJed Brown p4est_qcoord_t fineBound[2][P4EST_DIM] = {{quad->x,quad->y, 27120a96aa3bSJed Brown #if defined(P4_TO_P8) 27130a96aa3bSJed Brown quad->z 27140a96aa3bSJed Brown #endif 27150a96aa3bSJed Brown },{0}}; 27160a96aa3bSJed Brown PetscInt j; 27170a96aa3bSJed Brown for (j = 0; j < P4EST_DIM; j++) { /* get the coordinates of cell boundaries in each direction */ 27180a96aa3bSJed Brown coarseBound[1][j] = coarseBound[0][j] + P4EST_QUADRANT_LEN(quadCoarse->level); 27190a96aa3bSJed Brown fineBound[1][j] = fineBound[0][j] + P4EST_QUADRANT_LEN(quad->level); 27200a96aa3bSJed Brown } 27210a96aa3bSJed Brown for (j = 0; j < numClosureIndices; j++) { 27220a96aa3bSJed Brown PetscInt l, p; 27230a96aa3bSJed Brown PetscSFNode q; 27240a96aa3bSJed Brown 27250a96aa3bSJed Brown p = closurePointsF[numClosureIndices * c + j].index; 27260a96aa3bSJed Brown if (rootType[p-pStartF] == PETSC_MAX_INT) continue; 27270a96aa3bSJed Brown if (j == 0) { /* volume: ancestor is volume */ 27280a96aa3bSJed Brown l = 0; 27290a96aa3bSJed Brown } else if (j < 1 + P4EST_FACES) { /* facet */ 27300a96aa3bSJed Brown PetscInt face = PetscFaceToP4estFace[j - 1]; 27310a96aa3bSJed Brown PetscInt direction = face / 2; 27320a96aa3bSJed Brown PetscInt coarseFace = -1; 27330a96aa3bSJed Brown 27340a96aa3bSJed Brown if (coarseBound[face % 2][direction] == fineBound[face % 2][direction]) { 27350a96aa3bSJed Brown coarseFace = face; 27360a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27370a96aa3bSJed Brown } else { 27380a96aa3bSJed Brown l = 0; 27390a96aa3bSJed Brown } 27400a96aa3bSJed Brown #if defined(P4_TO_P8) 27410a96aa3bSJed Brown } else if (j < 1 + P4EST_FACES + P8EST_EDGES) { 27420a96aa3bSJed Brown PetscInt edge = PetscEdgeToP4estEdge[j - (1 + P4EST_FACES)]; 27430a96aa3bSJed Brown PetscInt direction = edge / 4; 27440a96aa3bSJed Brown PetscInt mod = edge % 4; 27450a96aa3bSJed Brown PetscInt coarseEdge = -1, coarseFace = -1; 27460a96aa3bSJed Brown PetscInt minDir = PetscMin((direction + 1) % 3,(direction + 2) % 3); 27470a96aa3bSJed Brown PetscInt maxDir = PetscMax((direction + 1) % 3,(direction + 2) % 3); 27480a96aa3bSJed Brown PetscBool dirTest[2]; 27490a96aa3bSJed Brown 27500a96aa3bSJed Brown dirTest[0] = (PetscBool) (coarseBound[mod % 2][minDir] == fineBound[mod % 2][minDir]); 27510a96aa3bSJed Brown dirTest[1] = (PetscBool) (coarseBound[mod / 2][maxDir] == fineBound[mod / 2][maxDir]); 27520a96aa3bSJed Brown 27530a96aa3bSJed Brown if (dirTest[0] && dirTest[1]) { /* fine edge falls on coarse edge */ 27540a96aa3bSJed Brown coarseEdge = edge; 27550a96aa3bSJed Brown l = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge]; 27560a96aa3bSJed Brown } else if (dirTest[0]) { /* fine edge falls on a coarse face in the minDir direction */ 27570a96aa3bSJed Brown coarseFace = 2 * minDir + (mod % 2); 27580a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27590a96aa3bSJed Brown } else if (dirTest[1]) { /* fine edge falls on a coarse face in the maxDir direction */ 27600a96aa3bSJed Brown coarseFace = 2 * maxDir + (mod / 2); 27610a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27620a96aa3bSJed Brown } else { 27630a96aa3bSJed Brown l = 0; 27640a96aa3bSJed Brown } 27650a96aa3bSJed Brown #endif 27660a96aa3bSJed Brown } else { 27670a96aa3bSJed Brown PetscInt vertex = PetscVertToP4estVert[P4EST_CHILDREN - (P4EST_INSUL - j)]; 27680a96aa3bSJed Brown PetscBool dirTest[P4EST_DIM]; 27690a96aa3bSJed Brown PetscInt m; 27700a96aa3bSJed Brown PetscInt numMatch = 0; 27710a96aa3bSJed Brown PetscInt coarseVertex = -1, coarseFace = -1; 27720a96aa3bSJed Brown #if defined(P4_TO_P8) 27730a96aa3bSJed Brown PetscInt coarseEdge = -1; 27740a96aa3bSJed Brown #endif 27750a96aa3bSJed Brown 27760a96aa3bSJed Brown for (m = 0; m < P4EST_DIM; m++) { 27770a96aa3bSJed Brown dirTest[m] = (PetscBool) (coarseBound[(vertex >> m) & 1][m] == fineBound[(vertex >> m) & 1][m]); 27780a96aa3bSJed Brown if (dirTest[m]) numMatch++; 27790a96aa3bSJed Brown } 27800a96aa3bSJed Brown if (numMatch == P4EST_DIM) { /* vertex on vertex */ 27810a96aa3bSJed Brown coarseVertex = vertex; 27820a96aa3bSJed Brown l = P4EST_INSUL - (P4EST_CHILDREN - P4estVertToPetscVert[coarseVertex]); 27830a96aa3bSJed Brown } else if (numMatch == 1) { /* vertex on face */ 27840a96aa3bSJed Brown for (m = 0; m < P4EST_DIM; m++) { 27850a96aa3bSJed Brown if (dirTest[m]) { 27860a96aa3bSJed Brown coarseFace = 2 * m + ((vertex >> m) & 1); 27870a96aa3bSJed Brown break; 27880a96aa3bSJed Brown } 27890a96aa3bSJed Brown } 27900a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27910a96aa3bSJed Brown #if defined(P4_TO_P8) 27920a96aa3bSJed Brown } else if (numMatch == 2) { /* vertex on edge */ 27930a96aa3bSJed Brown for (m = 0; m < P4EST_DIM; m++) { 27940a96aa3bSJed Brown if (!dirTest[m]) { 27950a96aa3bSJed Brown PetscInt otherDir1 = (m + 1) % 3; 27960a96aa3bSJed Brown PetscInt otherDir2 = (m + 2) % 3; 27970a96aa3bSJed Brown PetscInt minDir = PetscMin(otherDir1,otherDir2); 27980a96aa3bSJed Brown PetscInt maxDir = PetscMax(otherDir1,otherDir2); 27990a96aa3bSJed Brown 28000a96aa3bSJed Brown coarseEdge = m * 4 + 2 * ((vertex >> maxDir) & 1) + ((vertex >> minDir) & 1); 28010a96aa3bSJed Brown break; 28020a96aa3bSJed Brown } 28030a96aa3bSJed Brown } 28040a96aa3bSJed Brown l = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge]; 28050a96aa3bSJed Brown #endif 28060a96aa3bSJed Brown } else { /* volume */ 28070a96aa3bSJed Brown l = 0; 28080a96aa3bSJed Brown } 28090a96aa3bSJed Brown } 28100a96aa3bSJed Brown q = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + l]; 28110a96aa3bSJed Brown if (l > rootType[p-pStartF]) { 28120a96aa3bSJed Brown if (l >= P4EST_INSUL - P4EST_CHILDREN) { /* vertex on vertex: unconditional acceptance */ 28130a96aa3bSJed Brown if (transferIdent) { 28140a96aa3bSJed Brown roots[p-pStartF] = q; 28150a96aa3bSJed Brown rootType[p-pStartF] = PETSC_MAX_INT; 28160a96aa3bSJed Brown if (formCids) cids[p-pStartF] = -1; 28170a96aa3bSJed Brown } 28180a96aa3bSJed Brown } else { 28190a96aa3bSJed Brown PetscInt k, thisp = p, limit; 28200a96aa3bSJed Brown 28210a96aa3bSJed Brown roots[p-pStartF] = q; 28220a96aa3bSJed Brown rootType[p-pStartF] = l; 28230a96aa3bSJed Brown if (formCids) cids[p - pStartF] = proposedCids[j]; 28240a96aa3bSJed Brown limit = transferIdent ? levelDiff : (levelDiff - 1); 28250a96aa3bSJed Brown for (k = 0; k < limit; k++) { 28260a96aa3bSJed Brown PetscInt parent; 28270a96aa3bSJed Brown 28289566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plexF,thisp,&parent,NULL)); 28290a96aa3bSJed Brown if (parent == thisp) break; 28300a96aa3bSJed Brown 28310a96aa3bSJed Brown roots[parent-pStartF] = q; 28320a96aa3bSJed Brown rootType[parent-pStartF] = PETSC_MAX_INT; 28330a96aa3bSJed Brown if (formCids) cids[parent-pStartF] = -1; 28340a96aa3bSJed Brown thisp = parent; 28350a96aa3bSJed Brown } 28360a96aa3bSJed Brown } 28370a96aa3bSJed Brown } 28380a96aa3bSJed Brown } 28390a96aa3bSJed Brown } 28400a96aa3bSJed Brown } 28410a96aa3bSJed Brown } 28420a96aa3bSJed Brown 28430a96aa3bSJed Brown /* now every cell has labeled the points in its closure, so we first make sure everyone agrees by reducing to roots, and the broadcast the agreements */ 28440a96aa3bSJed Brown if (size > 1) { 28450a96aa3bSJed Brown PetscInt *rootTypeCopy, p; 28460a96aa3bSJed Brown 28479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF-pStartF,&rootTypeCopy)); 28489566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rootTypeCopy,rootType,pEndF-pStartF)); 28499566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(pointSF,MPIU_INT,rootTypeCopy,rootTypeCopy,MPIU_MAX)); 28509566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(pointSF,MPIU_INT,rootTypeCopy,rootTypeCopy,MPIU_MAX)); 28519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF,MPIU_INT,rootTypeCopy,rootTypeCopy,MPI_REPLACE)); 28529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF,MPIU_INT,rootTypeCopy,rootTypeCopy,MPI_REPLACE)); 28530a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 28540a96aa3bSJed Brown if (rootTypeCopy[p-pStartF] > rootType[p-pStartF]) { /* another process found a root of higher type (e.g. vertex instead of edge), which we want to accept, so nullify this */ 28550a96aa3bSJed Brown roots[p-pStartF].rank = -1; 28560a96aa3bSJed Brown roots[p-pStartF].index = -1; 28570a96aa3bSJed Brown } 28580a96aa3bSJed Brown if (formCids && rootTypeCopy[p-pStartF] == PETSC_MAX_INT) { 28590a96aa3bSJed Brown cids[p-pStartF] = -1; /* we have found an antecedent that is the same: no child id */ 28600a96aa3bSJed Brown } 28610a96aa3bSJed Brown } 28629566063dSJacob Faibussowitsch PetscCall(PetscFree(rootTypeCopy)); 28639566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(pointSF,nodeType,roots,roots,sfNodeReduce)); 28649566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(pointSF,nodeType,roots,roots,sfNodeReduce)); 28659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF,nodeType,roots,roots,MPI_REPLACE)); 28669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF,nodeType,roots,roots,MPI_REPLACE)); 28670a96aa3bSJed Brown } 28689566063dSJacob Faibussowitsch PetscCall(PetscFree(rootType)); 28690a96aa3bSJed Brown 28700a96aa3bSJed Brown { 28710a96aa3bSJed Brown PetscInt numRoots; 28720a96aa3bSJed Brown PetscInt numLeaves; 28730a96aa3bSJed Brown PetscInt *leaves; 28740a96aa3bSJed Brown PetscSFNode *iremote; 28750a96aa3bSJed Brown /* count leaves */ 28760a96aa3bSJed Brown 28770a96aa3bSJed Brown numRoots = pEndC - pStartC; 28780a96aa3bSJed Brown 28790a96aa3bSJed Brown numLeaves = 0; 28800a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 28810a96aa3bSJed Brown if (roots[p-pStartF].index >= 0) numLeaves++; 28820a96aa3bSJed Brown } 28839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves,&leaves)); 28849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves,&iremote)); 28850a96aa3bSJed Brown numLeaves = 0; 28860a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 28870a96aa3bSJed Brown if (roots[p-pStartF].index >= 0) { 28880a96aa3bSJed Brown leaves[numLeaves] = p-pStartF; 28890a96aa3bSJed Brown iremote[numLeaves] = roots[p-pStartF]; 28900a96aa3bSJed Brown numLeaves++; 28910a96aa3bSJed Brown } 28920a96aa3bSJed Brown } 28939566063dSJacob Faibussowitsch PetscCall(PetscFree(roots)); 28949566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,sf)); 28950a96aa3bSJed Brown if (numLeaves == (pEndF-pStartF)) { 28969566063dSJacob Faibussowitsch PetscCall(PetscFree(leaves)); 28979566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sf,numRoots,numLeaves,NULL,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER)); 28980a96aa3bSJed Brown } else { 28999566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sf,numRoots,numLeaves,leaves,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER)); 29000a96aa3bSJed Brown } 29010a96aa3bSJed Brown } 29020a96aa3bSJed Brown if (formCids) { 29030a96aa3bSJed Brown PetscSF pointSF; 29040a96aa3bSJed Brown PetscInt child; 29050a96aa3bSJed Brown 29069566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(plexF,&refTree)); 29079566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(plexF,&pointSF)); 29089566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(pointSF,MPIU_INT,cids,cids,MPIU_MAX)); 29099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(pointSF,MPIU_INT,cids,cids,MPIU_MAX)); 29100a96aa3bSJed Brown if (childIds) *childIds = cids; 29110a96aa3bSJed Brown for (child = 0; child < P4EST_CHILDREN; child++) { 29129566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(refTree,child+1,PETSC_TRUE,NULL,&childClosures[child])); 29130a96aa3bSJed Brown } 29149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(refTree,0,PETSC_TRUE,NULL,&rootClosure)); 29150a96aa3bSJed Brown } 29160a96aa3bSJed Brown } 29170a96aa3bSJed Brown if (saveInCoarse) { /* cache results */ 29189566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*sf)); 29190a96aa3bSJed Brown pforestC->pointSelfToAdaptSF = *sf; 29200a96aa3bSJed Brown if (!childIds) { 29210a96aa3bSJed Brown pforestC->pointSelfToAdaptCids = cids; 29220a96aa3bSJed Brown } else { 29239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF-pStartF,&pforestC->pointSelfToAdaptCids)); 29249566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(pforestC->pointSelfToAdaptCids,cids,pEndF-pStartF)); 29250a96aa3bSJed Brown } 29260a96aa3bSJed Brown } else if (saveInFine) { 29279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*sf)); 29280a96aa3bSJed Brown pforestF->pointAdaptToSelfSF = *sf; 29290a96aa3bSJed Brown if (!childIds) { 29300a96aa3bSJed Brown pforestF->pointAdaptToSelfCids = cids; 29310a96aa3bSJed Brown } else { 29329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF-pStartF,&pforestF->pointAdaptToSelfCids)); 29339566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(pforestF->pointAdaptToSelfCids,cids,pEndF-pStartF)); 29340a96aa3bSJed Brown } 29350a96aa3bSJed Brown } 29369566063dSJacob Faibussowitsch PetscCall(PetscFree2(treeQuads,treeQuadCounts)); 29379566063dSJacob Faibussowitsch PetscCall(PetscFree(coverQuads)); 29389566063dSJacob Faibussowitsch PetscCall(PetscFree(closurePointsC)); 29399566063dSJacob Faibussowitsch PetscCall(PetscFree(closurePointsF)); 29409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&nodeClosureType)); 29419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&sfNodeReduce)); 29429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&nodeType)); 29430a96aa3bSJed Brown PetscFunctionReturn(0); 29440a96aa3bSJed Brown } 29450a96aa3bSJed Brown 29460a96aa3bSJed Brown /* children are sf leaves of parents */ 29470a96aa3bSJed Brown static PetscErrorCode DMPforestGetTransferSF_Internal(DM coarse, DM fine, const PetscInt dofPerDim[], PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[]) 29480a96aa3bSJed Brown { 29490a96aa3bSJed Brown MPI_Comm comm; 2950d70f29a3SPierre Jolivet PetscMPIInt rank; 29510a96aa3bSJed Brown DM_Forest_pforest *pforestC, *pforestF; 29520a96aa3bSJed Brown DM plexC, plexF; 29530a96aa3bSJed Brown PetscInt pStartC, pEndC, pStartF, pEndF; 29540a96aa3bSJed Brown PetscSF pointTransferSF; 29550a96aa3bSJed Brown PetscBool allOnes = PETSC_TRUE; 29560a96aa3bSJed Brown 29570a96aa3bSJed Brown PetscFunctionBegin; 29580a96aa3bSJed Brown pforestC = (DM_Forest_pforest*) ((DM_Forest*) coarse->data)->data; 29590a96aa3bSJed Brown pforestF = (DM_Forest_pforest*) ((DM_Forest*) fine->data)->data; 296008401ef6SPierre Jolivet PetscCheck(pforestC->topo == pforestF->topo,PetscObjectComm((PetscObject)coarse),PETSC_ERR_ARG_INCOMP,"DM's must have the same base DM"); 29610a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)coarse); 29629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 29630a96aa3bSJed Brown 29640a96aa3bSJed Brown { 29650a96aa3bSJed Brown PetscInt i; 29660a96aa3bSJed Brown for (i = 0; i <= P4EST_DIM; i++) { 29670a96aa3bSJed Brown if (dofPerDim[i] != 1) { 29680a96aa3bSJed Brown allOnes = PETSC_FALSE; 29690a96aa3bSJed Brown break; 29700a96aa3bSJed Brown } 29710a96aa3bSJed Brown } 29720a96aa3bSJed Brown } 29739566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Point(coarse,fine,&pointTransferSF,transferIdent,childIds)); 29740a96aa3bSJed Brown if (allOnes) { 29750a96aa3bSJed Brown *sf = pointTransferSF; 29760a96aa3bSJed Brown PetscFunctionReturn(0); 29770a96aa3bSJed Brown } 29780a96aa3bSJed Brown 29799566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(fine,&plexF)); 29809566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexF,&pStartF,&pEndF)); 29819566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(coarse,&plexC)); 29829566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexC,&pStartC,&pEndC)); 29830a96aa3bSJed Brown { 29840a96aa3bSJed Brown PetscInt numRoots; 29850a96aa3bSJed Brown PetscInt numLeaves; 29860a96aa3bSJed Brown const PetscInt *leaves; 29870a96aa3bSJed Brown const PetscSFNode *iremote; 29880a96aa3bSJed Brown PetscInt d; 29890a96aa3bSJed Brown PetscSection leafSection, rootSection; 29900a96aa3bSJed Brown /* count leaves */ 29910a96aa3bSJed Brown 29929566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointTransferSF,&numRoots,&numLeaves,&leaves,&iremote)); 29939566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF,&rootSection)); 29949566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF,&leafSection)); 29959566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection,pStartC,pEndC)); 29969566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(leafSection,pStartF,pEndF)); 29970a96aa3bSJed Brown 29980a96aa3bSJed Brown for (d = 0; d <= P4EST_DIM; d++) { 29990a96aa3bSJed Brown PetscInt startC, endC, e; 30000a96aa3bSJed Brown 30019566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plexC,P4EST_DIM-d,&startC,&endC)); 30020a96aa3bSJed Brown for (e = startC; e < endC; e++) { 30039566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(rootSection,e,dofPerDim[d])); 30040a96aa3bSJed Brown } 30050a96aa3bSJed Brown } 30060a96aa3bSJed Brown 30070a96aa3bSJed Brown for (d = 0; d <= P4EST_DIM; d++) { 30080a96aa3bSJed Brown PetscInt startF, endF, e; 30090a96aa3bSJed Brown 30109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plexF,P4EST_DIM-d,&startF,&endF)); 30110a96aa3bSJed Brown for (e = startF; e < endF; e++) { 30129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(leafSection,e,dofPerDim[d])); 30130a96aa3bSJed Brown } 30140a96aa3bSJed Brown } 30150a96aa3bSJed Brown 30169566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 30179566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(leafSection)); 30180a96aa3bSJed Brown { 30190a96aa3bSJed Brown PetscInt nroots, nleaves; 30200a96aa3bSJed Brown PetscInt *mine, i, p; 30210a96aa3bSJed Brown PetscInt *offsets, *offsetsRoot; 30220a96aa3bSJed Brown PetscSFNode *remote; 30230a96aa3bSJed Brown 30249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF-pStartF,&offsets)); 30259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndC-pStartC,&offsetsRoot)); 30260a96aa3bSJed Brown for (p = pStartC; p < pEndC; p++) { 30279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootSection,p,&offsetsRoot[p-pStartC])); 30280a96aa3bSJed Brown } 30299566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointTransferSF,MPIU_INT,offsetsRoot,offsets,MPI_REPLACE)); 30309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointTransferSF,MPIU_INT,offsetsRoot,offsets,MPI_REPLACE)); 30319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection,&nroots)); 30320a96aa3bSJed Brown nleaves = 0; 30330a96aa3bSJed Brown for (i = 0; i < numLeaves; i++) { 30340a96aa3bSJed Brown PetscInt leaf = leaves ? leaves[i] : i; 30350a96aa3bSJed Brown PetscInt dof; 30360a96aa3bSJed Brown 30379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection,leaf,&dof)); 30380a96aa3bSJed Brown nleaves += dof; 30390a96aa3bSJed Brown } 30409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves,&mine)); 30419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves,&remote)); 30420a96aa3bSJed Brown nleaves = 0; 30430a96aa3bSJed Brown for (i = 0; i < numLeaves; i++) { 30440a96aa3bSJed Brown PetscInt leaf = leaves ? leaves[i] : i; 30450a96aa3bSJed Brown PetscInt dof; 30460a96aa3bSJed Brown PetscInt off, j; 30470a96aa3bSJed Brown 30489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection,leaf,&dof)); 30499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection,leaf,&off)); 30500a96aa3bSJed Brown for (j = 0; j < dof; j++) { 30510a96aa3bSJed Brown remote[nleaves].rank = iremote[i].rank; 30520a96aa3bSJed Brown remote[nleaves].index = offsets[leaf] + j; 30530a96aa3bSJed Brown mine[nleaves++] = off + j; 30540a96aa3bSJed Brown } 30550a96aa3bSJed Brown } 30569566063dSJacob Faibussowitsch PetscCall(PetscFree(offsetsRoot)); 30579566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 30589566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,sf)); 30599566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sf,nroots,nleaves,mine,PETSC_OWN_POINTER,remote,PETSC_OWN_POINTER)); 30600a96aa3bSJed Brown } 30619566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 30629566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 30639566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pointTransferSF)); 30640a96aa3bSJed Brown } 30650a96aa3bSJed Brown PetscFunctionReturn(0); 30660a96aa3bSJed Brown } 30670a96aa3bSJed Brown 30680a96aa3bSJed Brown static PetscErrorCode DMPforestGetTransferSF(DM dmA, DM dmB, const PetscInt dofPerDim[], PetscSF *sfAtoB, PetscSF *sfBtoA) 30690a96aa3bSJed Brown { 30700a96aa3bSJed Brown DM adaptA, adaptB; 30710a96aa3bSJed Brown DMAdaptFlag purpose; 30720a96aa3bSJed Brown 30730a96aa3bSJed Brown PetscFunctionBegin; 30749566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmA,&adaptA)); 30759566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmB,&adaptB)); 30760a96aa3bSJed Brown /* it is more efficient when the coarser mesh is the first argument: reorder if we know one is coarser than the other */ 30770a96aa3bSJed Brown if (adaptA && adaptA->data == dmB->data) { /* dmA was adapted from dmB */ 30789566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmA,&purpose)); 30790a96aa3bSJed Brown if (purpose == DM_ADAPT_REFINE) { 30809566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB)); 30810a96aa3bSJed Brown PetscFunctionReturn(0); 30820a96aa3bSJed Brown } 30830a96aa3bSJed Brown } else if (adaptB && adaptB->data == dmA->data) { /* dmB was adapted from dmA */ 30849566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmB,&purpose)); 30850a96aa3bSJed Brown if (purpose == DM_ADAPT_COARSEN) { 30869566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB)); 30870a96aa3bSJed Brown PetscFunctionReturn(0); 30880a96aa3bSJed Brown } 30890a96aa3bSJed Brown } 3090*1baa6e33SBarry Smith if (sfAtoB) PetscCall(DMPforestGetTransferSF_Internal(dmA,dmB,dofPerDim,sfAtoB,PETSC_TRUE,NULL)); 3091*1baa6e33SBarry Smith if (sfBtoA) PetscCall(DMPforestGetTransferSF_Internal(dmB,dmA,dofPerDim,sfBtoA,(PetscBool) (sfAtoB == NULL),NULL)); 30920a96aa3bSJed Brown PetscFunctionReturn(0); 30930a96aa3bSJed Brown } 30940a96aa3bSJed Brown 30950a96aa3bSJed Brown static PetscErrorCode DMPforestLabelsInitialize(DM dm, DM plex) 30960a96aa3bSJed Brown { 30970a96aa3bSJed Brown DM_Forest *forest = (DM_Forest*) dm->data; 30980a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data; 30990a96aa3bSJed Brown PetscInt cLocalStart, cLocalEnd, cStart, cEnd, fStart, fEnd, eStart, eEnd, vStart, vEnd; 31000a96aa3bSJed Brown PetscInt cStartBase, cEndBase, fStartBase, fEndBase, vStartBase, vEndBase, eStartBase, eEndBase; 31010a96aa3bSJed Brown PetscInt pStart, pEnd, pStartBase, pEndBase, p; 31020a96aa3bSJed Brown DM base; 31030a96aa3bSJed Brown PetscInt *star = NULL, starSize; 31040a96aa3bSJed Brown DMLabelLink next = dm->labels; 31050a96aa3bSJed Brown PetscInt guess = 0; 31060a96aa3bSJed Brown p4est_topidx_t num_trees = pforest->topo->conn->num_trees; 31070a96aa3bSJed Brown 31080a96aa3bSJed Brown PetscFunctionBegin; 31090a96aa3bSJed Brown pforest->labelsFinalized = PETSC_TRUE; 31100a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 31110a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 31129566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm,&base)); 31130a96aa3bSJed Brown if (!base) { 31140a96aa3bSJed Brown if (pforest->ghostName) { /* insert a label to make the boundaries, with stratum values denoting which face of the element touches the boundary */ 31150a96aa3bSJed Brown p4est_connectivity_t *conn = pforest->topo->conn; 31160a96aa3bSJed Brown p4est_t *p4est = pforest->forest; 31170a96aa3bSJed Brown p4est_tree_t *trees = (p4est_tree_t*) p4est->trees->array; 31180a96aa3bSJed Brown p4est_topidx_t t, flt = p4est->first_local_tree; 31190a96aa3bSJed Brown p4est_topidx_t llt = pforest->forest->last_local_tree; 31200a96aa3bSJed Brown DMLabel ghostLabel; 31210a96aa3bSJed Brown PetscInt c; 31220a96aa3bSJed Brown 31239566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(plex,pforest->ghostName)); 31249566063dSJacob Faibussowitsch PetscCall(DMGetLabel(plex,pforest->ghostName,&ghostLabel)); 31250a96aa3bSJed Brown for (c = cLocalStart, t = flt; t <= llt; t++) { 31260a96aa3bSJed Brown p4est_tree_t *tree = &trees[t]; 31270a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t*) tree->quadrants.array; 31280a96aa3bSJed Brown PetscInt numQuads = (PetscInt) tree->quadrants.elem_count; 31290a96aa3bSJed Brown PetscInt q; 31300a96aa3bSJed Brown 31310a96aa3bSJed Brown for (q = 0; q < numQuads; q++, c++) { 31320a96aa3bSJed Brown p4est_quadrant_t *quad = &quads[q]; 31330a96aa3bSJed Brown PetscInt f; 31340a96aa3bSJed Brown 31350a96aa3bSJed Brown for (f = 0; f < P4EST_FACES; f++) { 31360a96aa3bSJed Brown p4est_quadrant_t neigh; 31370a96aa3bSJed Brown int isOutside; 31380a96aa3bSJed Brown 31390a96aa3bSJed Brown PetscStackCallP4est(p4est_quadrant_face_neighbor,(quad,f,&neigh)); 31400a96aa3bSJed Brown PetscStackCallP4estReturn(isOutside,p4est_quadrant_is_outside_face,(&neigh)); 31410a96aa3bSJed Brown if (isOutside) { 31420a96aa3bSJed Brown p4est_topidx_t nt; 31430a96aa3bSJed Brown PetscInt nf; 31440a96aa3bSJed Brown 31450a96aa3bSJed Brown nt = conn->tree_to_tree[t * P4EST_FACES + f]; 31460a96aa3bSJed Brown nf = (PetscInt) conn->tree_to_face[t * P4EST_FACES + f]; 31470a96aa3bSJed Brown nf = nf % P4EST_FACES; 31480a96aa3bSJed Brown if (nt == t && nf == f) { 31490a96aa3bSJed Brown PetscInt plexF = P4estFaceToPetscFace[f]; 31500a96aa3bSJed Brown const PetscInt *cone; 31510a96aa3bSJed Brown 31529566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex,c,&cone)); 31539566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel,cone[plexF],plexF+1)); 31540a96aa3bSJed Brown } 31550a96aa3bSJed Brown } 31560a96aa3bSJed Brown } 31570a96aa3bSJed Brown } 31580a96aa3bSJed Brown } 31590a96aa3bSJed Brown } 31600a96aa3bSJed Brown PetscFunctionReturn(0); 31610a96aa3bSJed Brown } 31629566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(base,0,&cStartBase,&cEndBase)); 31639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(base,1,&fStartBase,&fEndBase)); 31649566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(base,P4EST_DIM-1,&eStartBase,&eEndBase)); 31659566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(base,0,&vStartBase,&vEndBase)); 31660a96aa3bSJed Brown 31679566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plex,0,&cStart,&cEnd)); 31689566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plex,1,&fStart,&fEnd)); 31699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plex,P4EST_DIM-1,&eStart,&eEnd)); 31709566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(plex,0,&vStart,&vEnd)); 31710a96aa3bSJed Brown 31729566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex,&pStart,&pEnd)); 31739566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(base,&pStartBase,&pEndBase)); 31740a96aa3bSJed Brown /* go through the mesh: use star to find a quadrant that borders a point. Use the closure to determine the 31750a96aa3bSJed Brown * orientation of the quadrant relative to that point. Use that to relate the point to the numbering in the base 31760a96aa3bSJed Brown * mesh, and extract a label value (since the base mesh is redundantly distributed, can be found locally). */ 31770a96aa3bSJed Brown while (next) { 31780a96aa3bSJed Brown DMLabel baseLabel; 31790a96aa3bSJed Brown DMLabel label = next->label; 31800a96aa3bSJed Brown PetscBool isDepth, isCellType, isGhost, isVTK, isSpmap; 31810a96aa3bSJed Brown const char *name; 31820a96aa3bSJed Brown 31839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) label, &name)); 31849566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"depth",&isDepth)); 31850a96aa3bSJed Brown if (isDepth) { 31860a96aa3bSJed Brown next = next->next; 31870a96aa3bSJed Brown continue; 31880a96aa3bSJed Brown } 31899566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"celltype",&isCellType)); 31900a96aa3bSJed Brown if (isCellType) { 31910a96aa3bSJed Brown next = next->next; 31920a96aa3bSJed Brown continue; 31930a96aa3bSJed Brown } 31949566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"ghost",&isGhost)); 31950a96aa3bSJed Brown if (isGhost) { 31960a96aa3bSJed Brown next = next->next; 31970a96aa3bSJed Brown continue; 31980a96aa3bSJed Brown } 31999566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"vtk",&isVTK)); 32000a96aa3bSJed Brown if (isVTK) { 32010a96aa3bSJed Brown next = next->next; 32020a96aa3bSJed Brown continue; 32030a96aa3bSJed Brown } 32049566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"_forest_base_subpoint_map",&isSpmap)); 32050a96aa3bSJed Brown if (!isSpmap) { 32069566063dSJacob Faibussowitsch PetscCall(DMGetLabel(base,name,&baseLabel)); 32070a96aa3bSJed Brown if (!baseLabel) { 32080a96aa3bSJed Brown next = next->next; 32090a96aa3bSJed Brown continue; 32100a96aa3bSJed Brown } 32119566063dSJacob Faibussowitsch PetscCall(DMLabelCreateIndex(baseLabel,pStartBase,pEndBase)); 32120a96aa3bSJed Brown } else baseLabel = NULL; 32130a96aa3bSJed Brown 32140a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 32150a96aa3bSJed Brown PetscInt s, c = -1, l; 32160a96aa3bSJed Brown PetscInt *closure = NULL, closureSize; 32170a96aa3bSJed Brown p4est_quadrant_t * ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array; 32180a96aa3bSJed Brown p4est_tree_t *trees = (p4est_tree_t*) pforest->forest->trees->array; 32190a96aa3bSJed Brown p4est_quadrant_t * q; 32200a96aa3bSJed Brown PetscInt t, val; 32210a96aa3bSJed Brown PetscBool zerosupportpoint = PETSC_FALSE; 32220a96aa3bSJed Brown 32239566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex,p,PETSC_FALSE,&starSize,&star)); 32240a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 32250a96aa3bSJed Brown PetscInt point = star[2*s]; 32260a96aa3bSJed Brown 32270a96aa3bSJed Brown if (cStart <= point && point < cEnd) { 32289566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex,point,PETSC_TRUE,&closureSize,&closure)); 32290a96aa3bSJed Brown for (l = 0; l < closureSize; l++) { 32300a96aa3bSJed Brown PetscInt qParent = closure[2 * l], q, pp = p, pParent = p; 32310a96aa3bSJed Brown do { /* check parents of q */ 32320a96aa3bSJed Brown q = qParent; 32330a96aa3bSJed Brown if (q == p) { 32340a96aa3bSJed Brown c = point; 32350a96aa3bSJed Brown break; 32360a96aa3bSJed Brown } 32379566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex,q,&qParent,NULL)); 32380a96aa3bSJed Brown } while (qParent != q); 32390a96aa3bSJed Brown if (c != -1) break; 32409566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex,pp,&pParent,NULL)); 32410a96aa3bSJed Brown q = closure[2 * l]; 32420a96aa3bSJed Brown while (pParent != pp) { /* check parents of p */ 32430a96aa3bSJed Brown pp = pParent; 32440a96aa3bSJed Brown if (pp == q) { 32450a96aa3bSJed Brown c = point; 32460a96aa3bSJed Brown break; 32470a96aa3bSJed Brown } 32489566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex,pp,&pParent,NULL)); 32490a96aa3bSJed Brown } 32500a96aa3bSJed Brown if (c != -1) break; 32510a96aa3bSJed Brown } 32529566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex,point,PETSC_TRUE,NULL,&closure)); 32530a96aa3bSJed Brown if (l < closureSize) break; 32540a96aa3bSJed Brown } else { 32550a96aa3bSJed Brown PetscInt supportSize; 32560a96aa3bSJed Brown 32579566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(plex,point,&supportSize)); 32580a96aa3bSJed Brown zerosupportpoint = (PetscBool) (zerosupportpoint || !supportSize); 32590a96aa3bSJed Brown } 32600a96aa3bSJed Brown } 32610a96aa3bSJed Brown if (c < 0) { 32620a96aa3bSJed Brown const char* prefix; 32630a96aa3bSJed Brown PetscBool print = PETSC_FALSE; 32640a96aa3bSJed Brown 32659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm,&prefix)); 32669566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options,prefix,"-dm_forest_print_label_error",&print,NULL)); 32670a96aa3bSJed Brown if (print) { 32680a96aa3bSJed Brown PetscInt i; 32690a96aa3bSJed Brown 327063a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF,"[%d] Failed to find cell with point %" PetscInt_FMT " in its closure for label %s (starSize %" PetscInt_FMT ")\n",PetscGlobalRank,p,baseLabel ? ((PetscObject)baseLabel)->name : "_forest_base_subpoint_map",starSize)); 327163a3b9bcSJacob Faibussowitsch for (i = 0; i < starSize; i++) PetscCall(PetscPrintf(PETSC_COMM_SELF," star[%" PetscInt_FMT "] = %" PetscInt_FMT ",%" PetscInt_FMT "\n",i,star[2*i],star[2*i+1])); 32720a96aa3bSJed Brown } 32739566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex,p,PETSC_FALSE,NULL,&star)); 32740a96aa3bSJed Brown if (zerosupportpoint) continue; 327563a3b9bcSJacob Faibussowitsch else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Failed to find cell with point %" PetscInt_FMT " in its closure for label %s. Rerun with -dm_forest_print_label_error for more information",p,baseLabel ? ((PetscObject) baseLabel)->name : "_forest_base_subpoint_map"); 32760a96aa3bSJed Brown } 32779566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex,p,PETSC_FALSE,NULL,&star)); 32780a96aa3bSJed Brown 32790a96aa3bSJed Brown if (c < cLocalStart) { 32800a96aa3bSJed Brown /* get from the beginning of the ghost layer */ 32810a96aa3bSJed Brown q = &(ghosts[c]); 32820a96aa3bSJed Brown t = (PetscInt) q->p.which_tree; 32830a96aa3bSJed Brown } else if (c < cLocalEnd) { 32840a96aa3bSJed Brown PetscInt lo = 0, hi = num_trees; 32850a96aa3bSJed Brown /* get from local quadrants: have to find the right tree */ 32860a96aa3bSJed Brown 32870a96aa3bSJed Brown c -= cLocalStart; 32880a96aa3bSJed Brown 32890a96aa3bSJed Brown do { 32900a96aa3bSJed Brown p4est_tree_t *tree; 32910a96aa3bSJed Brown 32921dca8a05SBarry Smith PetscCheck(guess >= lo && guess < num_trees && lo < hi,PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed binary search"); 32930a96aa3bSJed Brown tree = &trees[guess]; 32940a96aa3bSJed Brown if (c < tree->quadrants_offset) { 32950a96aa3bSJed Brown hi = guess; 32960a96aa3bSJed Brown } else if (c < tree->quadrants_offset + (PetscInt) tree->quadrants.elem_count) { 32970a96aa3bSJed Brown q = &((p4est_quadrant_t *)tree->quadrants.array)[c - (PetscInt) tree->quadrants_offset]; 32980a96aa3bSJed Brown t = guess; 32990a96aa3bSJed Brown break; 33000a96aa3bSJed Brown } else { 33010a96aa3bSJed Brown lo = guess + 1; 33020a96aa3bSJed Brown } 33030a96aa3bSJed Brown guess = lo + (hi - lo) / 2; 33040a96aa3bSJed Brown } while (1); 33050a96aa3bSJed Brown } else { 33060a96aa3bSJed Brown /* get from the end of the ghost layer */ 33070a96aa3bSJed Brown c -= (cLocalEnd - cLocalStart); 33080a96aa3bSJed Brown 33090a96aa3bSJed Brown q = &(ghosts[c]); 33100a96aa3bSJed Brown t = (PetscInt) q->p.which_tree; 33110a96aa3bSJed Brown } 33120a96aa3bSJed Brown 33130a96aa3bSJed Brown if (l == 0) { /* cell */ 33140a96aa3bSJed Brown if (baseLabel) { 33159566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,t+cStartBase,&val)); 33160a96aa3bSJed Brown } else { 33170a96aa3bSJed Brown val = t+cStartBase; 33180a96aa3bSJed Brown } 33199566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 33200a96aa3bSJed Brown } else if (l >= 1 && l < 1 + P4EST_FACES) { /* facet */ 33210a96aa3bSJed Brown p4est_quadrant_t nq; 33220a96aa3bSJed Brown int isInside; 33230a96aa3bSJed Brown 33240a96aa3bSJed Brown l = PetscFaceToP4estFace[l - 1]; 33250a96aa3bSJed Brown PetscStackCallP4est(p4est_quadrant_face_neighbor,(q,l,&nq)); 33260a96aa3bSJed Brown PetscStackCallP4estReturn(isInside,p4est_quadrant_is_inside_root,(&nq)); 33270a96aa3bSJed Brown if (isInside) { 33280a96aa3bSJed Brown /* this facet is in the interior of a tree, so it inherits the label of the tree */ 33290a96aa3bSJed Brown if (baseLabel) { 33309566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,t+cStartBase,&val)); 33310a96aa3bSJed Brown } else { 33320a96aa3bSJed Brown val = t+cStartBase; 33330a96aa3bSJed Brown } 33349566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 33350a96aa3bSJed Brown } else { 33360a96aa3bSJed Brown PetscInt f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + l]; 33370a96aa3bSJed Brown 33380a96aa3bSJed Brown if (baseLabel) { 33399566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,f+fStartBase,&val)); 33400a96aa3bSJed Brown } else { 33410a96aa3bSJed Brown val = f+fStartBase; 33420a96aa3bSJed Brown } 33439566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 33440a96aa3bSJed Brown } 33450a96aa3bSJed Brown #if defined(P4_TO_P8) 33460a96aa3bSJed Brown } else if (l >= 1 + P4EST_FACES && l < 1 + P4EST_FACES + P8EST_EDGES) { /* edge */ 33470a96aa3bSJed Brown p4est_quadrant_t nq; 33480a96aa3bSJed Brown int isInside; 33490a96aa3bSJed Brown 33500a96aa3bSJed Brown l = PetscEdgeToP4estEdge[l - (1 + P4EST_FACES)]; 33510a96aa3bSJed Brown PetscStackCallP4est(p8est_quadrant_edge_neighbor,(q,l,&nq)); 33520a96aa3bSJed Brown PetscStackCallP4estReturn(isInside,p4est_quadrant_is_inside_root,(&nq)); 33530a96aa3bSJed Brown if (isInside) { 33540a96aa3bSJed Brown /* this edge is in the interior of a tree, so it inherits the label of the tree */ 33550a96aa3bSJed Brown if (baseLabel) { 33569566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,t+cStartBase,&val)); 33570a96aa3bSJed Brown } else { 33580a96aa3bSJed Brown val = t+cStartBase; 33590a96aa3bSJed Brown } 33609566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 33610a96aa3bSJed Brown } else { 33620a96aa3bSJed Brown int isOutsideFace; 33630a96aa3bSJed Brown 33640a96aa3bSJed Brown PetscStackCallP4estReturn(isOutsideFace,p4est_quadrant_is_outside_face,(&nq)); 33650a96aa3bSJed Brown if (isOutsideFace) { 33660a96aa3bSJed Brown PetscInt f; 33670a96aa3bSJed Brown 33680a96aa3bSJed Brown if (nq.x < 0) { 33690a96aa3bSJed Brown f = 0; 33700a96aa3bSJed Brown } else if (nq.x >= P4EST_ROOT_LEN) { 33710a96aa3bSJed Brown f = 1; 33720a96aa3bSJed Brown } else if (nq.y < 0) { 33730a96aa3bSJed Brown f = 2; 33740a96aa3bSJed Brown } else if (nq.y >= P4EST_ROOT_LEN) { 33750a96aa3bSJed Brown f = 3; 33760a96aa3bSJed Brown } else if (nq.z < 0) { 33770a96aa3bSJed Brown f = 4; 33780a96aa3bSJed Brown } else { 33790a96aa3bSJed Brown f = 5; 33800a96aa3bSJed Brown } 33810a96aa3bSJed Brown f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f]; 33820a96aa3bSJed Brown if (baseLabel) { 33839566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,f+fStartBase,&val)); 33840a96aa3bSJed Brown } else { 33850a96aa3bSJed Brown val = f+fStartBase; 33860a96aa3bSJed Brown } 33879566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 33880a96aa3bSJed Brown } else { /* the quadrant edge corresponds to the tree edge */ 33890a96aa3bSJed Brown PetscInt e = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + l]; 33900a96aa3bSJed Brown 33910a96aa3bSJed Brown if (baseLabel) { 33929566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,e+eStartBase,&val)); 33930a96aa3bSJed Brown } else { 33940a96aa3bSJed Brown val = e+eStartBase; 33950a96aa3bSJed Brown } 33969566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 33970a96aa3bSJed Brown } 33980a96aa3bSJed Brown } 33990a96aa3bSJed Brown #endif 34000a96aa3bSJed Brown } else { /* vertex */ 34010a96aa3bSJed Brown p4est_quadrant_t nq; 34020a96aa3bSJed Brown int isInside; 34030a96aa3bSJed Brown 34040a96aa3bSJed Brown #if defined(P4_TO_P8) 34050a96aa3bSJed Brown l = PetscVertToP4estVert[l - (1 + P4EST_FACES + P8EST_EDGES)]; 34060a96aa3bSJed Brown #else 34070a96aa3bSJed Brown l = PetscVertToP4estVert[l - (1 + P4EST_FACES)]; 34080a96aa3bSJed Brown #endif 34090a96aa3bSJed Brown PetscStackCallP4est(p4est_quadrant_corner_neighbor,(q,l,&nq)); 34100a96aa3bSJed Brown PetscStackCallP4estReturn(isInside,p4est_quadrant_is_inside_root,(&nq)); 34110a96aa3bSJed Brown if (isInside) { 34120a96aa3bSJed Brown if (baseLabel) { 34139566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,t+cStartBase,&val)); 34140a96aa3bSJed Brown } else { 34150a96aa3bSJed Brown val = t+cStartBase; 34160a96aa3bSJed Brown } 34179566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 34180a96aa3bSJed Brown } else { 34190a96aa3bSJed Brown int isOutside; 34200a96aa3bSJed Brown 34210a96aa3bSJed Brown PetscStackCallP4estReturn(isOutside,p4est_quadrant_is_outside_face,(&nq)); 34220a96aa3bSJed Brown if (isOutside) { 34230a96aa3bSJed Brown PetscInt f = -1; 34240a96aa3bSJed Brown 34250a96aa3bSJed Brown if (nq.x < 0) { 34260a96aa3bSJed Brown f = 0; 34270a96aa3bSJed Brown } else if (nq.x >= P4EST_ROOT_LEN) { 34280a96aa3bSJed Brown f = 1; 34290a96aa3bSJed Brown } else if (nq.y < 0) { 34300a96aa3bSJed Brown f = 2; 34310a96aa3bSJed Brown } else if (nq.y >= P4EST_ROOT_LEN) { 34320a96aa3bSJed Brown f = 3; 34330a96aa3bSJed Brown #if defined(P4_TO_P8) 34340a96aa3bSJed Brown } else if (nq.z < 0) { 34350a96aa3bSJed Brown f = 4; 34360a96aa3bSJed Brown } else { 34370a96aa3bSJed Brown f = 5; 34380a96aa3bSJed Brown #endif 34390a96aa3bSJed Brown } 34400a96aa3bSJed Brown f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f]; 34410a96aa3bSJed Brown if (baseLabel) { 34429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,f+fStartBase,&val)); 34430a96aa3bSJed Brown } else { 34440a96aa3bSJed Brown val = f+fStartBase; 34450a96aa3bSJed Brown } 34469566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 34470a96aa3bSJed Brown continue; 34480a96aa3bSJed Brown } 34490a96aa3bSJed Brown #if defined(P4_TO_P8) 34500a96aa3bSJed Brown PetscStackCallP4estReturn(isOutside,p8est_quadrant_is_outside_edge,(&nq)); 34510a96aa3bSJed Brown if (isOutside) { 34520a96aa3bSJed Brown /* outside edge */ 34530a96aa3bSJed Brown PetscInt e = -1; 34540a96aa3bSJed Brown 34550a96aa3bSJed Brown if (nq.x >= 0 && nq.x < P4EST_ROOT_LEN) { 34560a96aa3bSJed Brown if (nq.z < 0) { 34570a96aa3bSJed Brown if (nq.y < 0) { 34580a96aa3bSJed Brown e = 0; 34590a96aa3bSJed Brown } else { 34600a96aa3bSJed Brown e = 1; 34610a96aa3bSJed Brown } 34620a96aa3bSJed Brown } else { 34630a96aa3bSJed Brown if (nq.y < 0) { 34640a96aa3bSJed Brown e = 2; 34650a96aa3bSJed Brown } else { 34660a96aa3bSJed Brown e = 3; 34670a96aa3bSJed Brown } 34680a96aa3bSJed Brown } 34690a96aa3bSJed Brown } else if (nq.y >= 0 && nq.y < P4EST_ROOT_LEN) { 34700a96aa3bSJed Brown if (nq.z < 0) { 34710a96aa3bSJed Brown if (nq.x < 0) { 34720a96aa3bSJed Brown e = 4; 34730a96aa3bSJed Brown } else { 34740a96aa3bSJed Brown e = 5; 34750a96aa3bSJed Brown } 34760a96aa3bSJed Brown } else { 34770a96aa3bSJed Brown if (nq.x < 0) { 34780a96aa3bSJed Brown e = 6; 34790a96aa3bSJed Brown } else { 34800a96aa3bSJed Brown e = 7; 34810a96aa3bSJed Brown } 34820a96aa3bSJed Brown } 34830a96aa3bSJed Brown } else { 34840a96aa3bSJed Brown if (nq.y < 0) { 34850a96aa3bSJed Brown if (nq.x < 0) { 34860a96aa3bSJed Brown e = 8; 34870a96aa3bSJed Brown } else { 34880a96aa3bSJed Brown e = 9; 34890a96aa3bSJed Brown } 34900a96aa3bSJed Brown } else { 34910a96aa3bSJed Brown if (nq.x < 0) { 34920a96aa3bSJed Brown e = 10; 34930a96aa3bSJed Brown } else { 34940a96aa3bSJed Brown e = 11; 34950a96aa3bSJed Brown } 34960a96aa3bSJed Brown } 34970a96aa3bSJed Brown } 34980a96aa3bSJed Brown 34990a96aa3bSJed Brown e = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + e]; 35000a96aa3bSJed Brown if (baseLabel) { 35019566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,e+eStartBase,&val)); 35020a96aa3bSJed Brown } else { 35030a96aa3bSJed Brown val = e+eStartBase; 35040a96aa3bSJed Brown } 35059566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 35060a96aa3bSJed Brown continue; 35070a96aa3bSJed Brown } 35080a96aa3bSJed Brown #endif 35090a96aa3bSJed Brown { 35100a96aa3bSJed Brown /* outside vertex: same corner as quadrant corner */ 35110a96aa3bSJed Brown PetscInt v = pforest->topo->conn->tree_to_corner[P4EST_CHILDREN * t + l]; 35120a96aa3bSJed Brown 35130a96aa3bSJed Brown if (baseLabel) { 35149566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel,v+vStartBase,&val)); 35150a96aa3bSJed Brown } else { 35160a96aa3bSJed Brown val = v+vStartBase; 35170a96aa3bSJed Brown } 35189566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,val)); 35190a96aa3bSJed Brown } 35200a96aa3bSJed Brown } 35210a96aa3bSJed Brown } 35220a96aa3bSJed Brown } 35230a96aa3bSJed Brown next = next->next; 35240a96aa3bSJed Brown } 35250a96aa3bSJed Brown PetscFunctionReturn(0); 35260a96aa3bSJed Brown } 35270a96aa3bSJed Brown 35280a96aa3bSJed Brown static PetscErrorCode DMPforestLabelsFinalize(DM dm, DM plex) 35290a96aa3bSJed Brown { 35300a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data; 35310a96aa3bSJed Brown DM adapt; 35320a96aa3bSJed Brown 35330a96aa3bSJed Brown PetscFunctionBegin; 35340a96aa3bSJed Brown if (pforest->labelsFinalized) PetscFunctionReturn(0); 35350a96aa3bSJed Brown pforest->labelsFinalized = PETSC_TRUE; 35369566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dm,&adapt)); 35370a96aa3bSJed Brown if (!adapt) { 35380a96aa3bSJed Brown /* Initialize labels from the base dm */ 35399566063dSJacob Faibussowitsch PetscCall(DMPforestLabelsInitialize(dm,plex)); 35400a96aa3bSJed Brown } else { 35410a96aa3bSJed Brown PetscInt dofPerDim[4]={1, 1, 1, 1}; 35420a96aa3bSJed Brown PetscSF transferForward, transferBackward, pointSF; 35430a96aa3bSJed Brown PetscInt pStart, pEnd, pStartA, pEndA; 35440a96aa3bSJed Brown PetscInt *values, *adaptValues; 35450a96aa3bSJed Brown DMLabelLink next = adapt->labels; 35460a96aa3bSJed Brown DMLabel adaptLabel; 35470a96aa3bSJed Brown DM adaptPlex; 35480a96aa3bSJed Brown 35499566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityLabel(dm,&adaptLabel)); 35509566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(adapt,&adaptPlex)); 35519566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF(adapt,dm,dofPerDim,&transferForward,&transferBackward)); 35529566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex,&pStart,&pEnd)); 35539566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(adaptPlex,&pStartA,&pEndA)); 35549566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd-pStart,&values,pEndA-pStartA,&adaptValues)); 35559566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(plex,&pointSF)); 35560a96aa3bSJed Brown if (PetscDefined(USE_DEBUG)) { 35570a96aa3bSJed Brown PetscInt p; 35580a96aa3bSJed Brown for (p = pStartA; p < pEndA; p++) adaptValues[p-pStartA] = -1; 35590a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) values[p-pStart] = -2; 35600a96aa3bSJed Brown if (transferForward) { 35619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(transferForward,MPIU_INT,adaptValues,values,MPI_REPLACE)); 35629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(transferForward,MPIU_INT,adaptValues,values,MPI_REPLACE)); 35630a96aa3bSJed Brown } 35640a96aa3bSJed Brown if (transferBackward) { 35659566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(transferBackward,MPIU_INT,adaptValues,values,MPIU_MAX)); 35669566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(transferBackward,MPIU_INT,adaptValues,values,MPIU_MAX)); 35670a96aa3bSJed Brown } 35680a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 35690a96aa3bSJed Brown PetscInt q = p, parent; 35700a96aa3bSJed Brown 35719566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex,q,&parent,NULL)); 35720a96aa3bSJed Brown while (parent != q) { 35730a96aa3bSJed Brown if (values[parent] == -2) values[parent] = values[q]; 35740a96aa3bSJed Brown q = parent; 35759566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex,q,&parent,NULL)); 35760a96aa3bSJed Brown } 35770a96aa3bSJed Brown } 35789566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(pointSF,MPIU_INT,values,values,MPIU_MAX)); 35799566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(pointSF,MPIU_INT,values,values,MPIU_MAX)); 35809566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF,MPIU_INT,values,values,MPI_REPLACE)); 35819566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF,MPIU_INT,values,values,MPI_REPLACE)); 35820a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 358363a3b9bcSJacob Faibussowitsch PetscCheck(values[p-pStart] != -2,PETSC_COMM_SELF,PETSC_ERR_PLIB,"uncovered point %" PetscInt_FMT,p); 35840a96aa3bSJed Brown } 35850a96aa3bSJed Brown } 35860a96aa3bSJed Brown while (next) { 35870a96aa3bSJed Brown DMLabel nextLabel = next->label; 35880a96aa3bSJed Brown const char *name; 35890a96aa3bSJed Brown PetscBool isDepth, isCellType, isGhost, isVTK; 35900a96aa3bSJed Brown DMLabel label; 35910a96aa3bSJed Brown PetscInt p; 35920a96aa3bSJed Brown 35939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) nextLabel, &name)); 35949566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"depth",&isDepth)); 35950a96aa3bSJed Brown if (isDepth) { 35960a96aa3bSJed Brown next = next->next; 35970a96aa3bSJed Brown continue; 35980a96aa3bSJed Brown } 35999566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"celltype",&isCellType)); 36000a96aa3bSJed Brown if (isCellType) { 36010a96aa3bSJed Brown next = next->next; 36020a96aa3bSJed Brown continue; 36030a96aa3bSJed Brown } 36049566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"ghost",&isGhost)); 36050a96aa3bSJed Brown if (isGhost) { 36060a96aa3bSJed Brown next = next->next; 36070a96aa3bSJed Brown continue; 36080a96aa3bSJed Brown } 36099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name,"vtk",&isVTK)); 36100a96aa3bSJed Brown if (isVTK) { 36110a96aa3bSJed Brown next = next->next; 36120a96aa3bSJed Brown continue; 36130a96aa3bSJed Brown } 36140a96aa3bSJed Brown if (nextLabel == adaptLabel) { 36150a96aa3bSJed Brown next = next->next; 36160a96aa3bSJed Brown continue; 36170a96aa3bSJed Brown } 36180a96aa3bSJed Brown /* label was created earlier */ 36199566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm,name,&label)); 36200a96aa3bSJed Brown for (p = pStartA; p < pEndA; p++) { 36219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(nextLabel,p,&adaptValues[p])); 36220a96aa3bSJed Brown } 36230a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) values[p] = PETSC_MIN_INT; 36240a96aa3bSJed Brown 3625*1baa6e33SBarry Smith if (transferForward) PetscCall(PetscSFBcastBegin(transferForward,MPIU_INT,adaptValues,values,MPI_REPLACE)); 3626*1baa6e33SBarry Smith if (transferBackward) PetscCall(PetscSFReduceBegin(transferBackward,MPIU_INT,adaptValues,values,MPIU_MAX)); 3627*1baa6e33SBarry Smith if (transferForward) PetscCall(PetscSFBcastEnd(transferForward,MPIU_INT,adaptValues,values,MPI_REPLACE)); 3628*1baa6e33SBarry Smith if (transferBackward) PetscCall(PetscSFReduceEnd(transferBackward,MPIU_INT,adaptValues,values,MPIU_MAX)); 36290a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 36300a96aa3bSJed Brown PetscInt q = p, parent; 36310a96aa3bSJed Brown 36329566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex,q,&parent,NULL)); 36330a96aa3bSJed Brown while (parent != q) { 36340a96aa3bSJed Brown if (values[parent] == PETSC_MIN_INT) values[parent] = values[q]; 36350a96aa3bSJed Brown q = parent; 36369566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex,q,&parent,NULL)); 36370a96aa3bSJed Brown } 36380a96aa3bSJed Brown } 36399566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(pointSF,MPIU_INT,values,values,MPIU_MAX)); 36409566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(pointSF,MPIU_INT,values,values,MPIU_MAX)); 36419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF,MPIU_INT,values,values,MPI_REPLACE)); 36429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF,MPIU_INT,values,values,MPI_REPLACE)); 36430a96aa3bSJed Brown 36440a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 36459566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label,p,values[p])); 36460a96aa3bSJed Brown } 36470a96aa3bSJed Brown next = next->next; 36480a96aa3bSJed Brown } 36499566063dSJacob Faibussowitsch PetscCall(PetscFree2(values,adaptValues)); 36509566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&transferForward)); 36519566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&transferBackward)); 36520a96aa3bSJed Brown pforest->labelsFinalized = PETSC_TRUE; 36530a96aa3bSJed Brown } 36540a96aa3bSJed Brown PetscFunctionReturn(0); 36550a96aa3bSJed Brown } 36560a96aa3bSJed Brown 36570a96aa3bSJed Brown static PetscErrorCode DMPforestMapCoordinates_Cell(DM plex, p4est_geometry_t *geom, PetscInt cell, p4est_quadrant_t *q, p4est_topidx_t t, p4est_connectivity_t * conn, PetscScalar *coords) 36580a96aa3bSJed Brown { 36590a96aa3bSJed Brown PetscInt closureSize, c, coordStart, coordEnd, coordDim; 36600a96aa3bSJed Brown PetscInt *closure = NULL; 36610a96aa3bSJed Brown PetscSection coordSec; 36620a96aa3bSJed Brown 36630a96aa3bSJed Brown PetscFunctionBegin; 36649566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(plex,&coordSec)); 36659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSec,&coordStart,&coordEnd)); 36669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(plex,&coordDim)); 36679566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex,cell,PETSC_TRUE,&closureSize,&closure)); 36680a96aa3bSJed Brown for (c = 0; c < closureSize; c++) { 36690a96aa3bSJed Brown PetscInt point = closure[2 * c]; 36700a96aa3bSJed Brown 36710a96aa3bSJed Brown if (point >= coordStart && point < coordEnd) { 36720a96aa3bSJed Brown PetscInt dof, off; 36730a96aa3bSJed Brown PetscInt nCoords, i; 36749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSec,point,&dof)); 367508401ef6SPierre Jolivet PetscCheck(dof % coordDim == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Did not understand coordinate layout"); 36760a96aa3bSJed Brown nCoords = dof / coordDim; 36779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSec,point,&off)); 36780a96aa3bSJed Brown for (i = 0; i < nCoords; i++) { 36790a96aa3bSJed Brown PetscScalar *coord = &coords[off + i * coordDim]; 36800a96aa3bSJed Brown double coordP4est[3] = {0.}; 36810a96aa3bSJed Brown double coordP4estMapped[3] = {0.}; 36820a96aa3bSJed Brown PetscInt j; 36830a96aa3bSJed Brown PetscReal treeCoords[P4EST_CHILDREN][3] = {{0.}}; 36840a96aa3bSJed Brown PetscReal eta[3] = {0.}; 36850a96aa3bSJed Brown PetscInt numRounds = 10; 36860a96aa3bSJed Brown PetscReal coordGuess[3] = {0.}; 36870a96aa3bSJed Brown 36880a96aa3bSJed Brown eta[0] = (PetscReal) q->x / (PetscReal) P4EST_ROOT_LEN; 36890a96aa3bSJed Brown eta[1] = (PetscReal) q->y / (PetscReal) P4EST_ROOT_LEN; 36900a96aa3bSJed Brown #if defined(P4_TO_P8) 36910a96aa3bSJed Brown eta[2] = (PetscReal) q->z / (PetscReal) P4EST_ROOT_LEN; 36920a96aa3bSJed Brown #endif 36930a96aa3bSJed Brown 36940a96aa3bSJed Brown for (j = 0; j < P4EST_CHILDREN; j++) { 36950a96aa3bSJed Brown PetscInt k; 36960a96aa3bSJed Brown 36970a96aa3bSJed Brown for (k = 0; k < 3; k++) treeCoords[j][k] = conn->vertices[3 * conn->tree_to_vertex[P4EST_CHILDREN * t + j] + k]; 36980a96aa3bSJed Brown } 36990a96aa3bSJed Brown 37000a96aa3bSJed Brown for (j = 0; j < P4EST_CHILDREN; j++) { 37010a96aa3bSJed Brown PetscInt k; 37020a96aa3bSJed Brown PetscReal prod = 1.; 37030a96aa3bSJed Brown 37040a96aa3bSJed Brown for (k = 0; k < P4EST_DIM; k++) prod *= (j & (1 << k)) ? eta[k] : (1. - eta[k]); 37050a96aa3bSJed Brown for (k = 0; k < 3; k++) coordGuess[k] += prod * treeCoords[j][k]; 37060a96aa3bSJed Brown } 37070a96aa3bSJed Brown 37080a96aa3bSJed Brown for (j = 0; j < numRounds; j++) { 37090a96aa3bSJed Brown PetscInt dir; 37100a96aa3bSJed Brown 37110a96aa3bSJed Brown for (dir = 0; dir < P4EST_DIM; dir++) { 37120a96aa3bSJed Brown PetscInt k; 37130a96aa3bSJed Brown PetscReal diff[3]; 37140a96aa3bSJed Brown PetscReal dXdeta[3] = {0.}; 37150a96aa3bSJed Brown PetscReal rhs, scale, update; 37160a96aa3bSJed Brown 37170a96aa3bSJed Brown for (k = 0; k < 3; k++) diff[k] = coordP4est[k] - coordGuess[k]; 37180a96aa3bSJed Brown for (k = 0; k < P4EST_CHILDREN; k++) { 37190a96aa3bSJed Brown PetscInt l; 37200a96aa3bSJed Brown PetscReal prod = 1.; 37210a96aa3bSJed Brown 37220a96aa3bSJed Brown for (l = 0; l < P4EST_DIM; l++) { 37230a96aa3bSJed Brown if (l == dir) { 37240a96aa3bSJed Brown prod *= (k & (1 << l)) ? 1. : -1.; 37250a96aa3bSJed Brown } else { 37260a96aa3bSJed Brown prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]); 37270a96aa3bSJed Brown } 37280a96aa3bSJed Brown } 37290a96aa3bSJed Brown for (l = 0; l < 3; l++) dXdeta[l] += prod * treeCoords[k][l]; 37300a96aa3bSJed Brown } 37310a96aa3bSJed Brown rhs = 0.; 37320a96aa3bSJed Brown scale = 0; 37330a96aa3bSJed Brown for (k = 0; k < 3; k++) { 37340a96aa3bSJed Brown rhs += diff[k] * dXdeta[k]; 37350a96aa3bSJed Brown scale += dXdeta[k] * dXdeta[k]; 37360a96aa3bSJed Brown } 37370a96aa3bSJed Brown update = rhs / scale; 37380a96aa3bSJed Brown eta[dir] += update; 37390a96aa3bSJed Brown eta[dir] = PetscMin(eta[dir],1.); 37400a96aa3bSJed Brown eta[dir] = PetscMax(eta[dir],0.); 37410a96aa3bSJed Brown 37420a96aa3bSJed Brown coordGuess[0] = coordGuess[1] = coordGuess[2] = 0.; 37430a96aa3bSJed Brown for (k = 0; k < P4EST_CHILDREN; k++) { 37440a96aa3bSJed Brown PetscInt l; 37450a96aa3bSJed Brown PetscReal prod = 1.; 37460a96aa3bSJed Brown 37470a96aa3bSJed Brown for (l = 0; l < P4EST_DIM; l++) prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]); 37480a96aa3bSJed Brown for (l = 0; l < 3; l++) coordGuess[l] += prod * treeCoords[k][l]; 37490a96aa3bSJed Brown } 37500a96aa3bSJed Brown } 37510a96aa3bSJed Brown } 37520a96aa3bSJed Brown for (j = 0; j < 3; j++) coordP4est[j] = (double) eta[j]; 37530a96aa3bSJed Brown 37540a96aa3bSJed Brown if (geom) { 37550a96aa3bSJed Brown (geom->X)(geom,t,coordP4est,coordP4estMapped); 37560a96aa3bSJed Brown for (j = 0; j < coordDim; j++) coord[j] = (PetscScalar) coordP4estMapped[j]; 37570a96aa3bSJed Brown } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded"); 37580a96aa3bSJed Brown } 37590a96aa3bSJed Brown } 37600a96aa3bSJed Brown } 37619566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex,cell,PETSC_TRUE,&closureSize,&closure)); 37620a96aa3bSJed Brown PetscFunctionReturn(0); 37630a96aa3bSJed Brown } 37640a96aa3bSJed Brown 37650a96aa3bSJed Brown static PetscErrorCode DMPforestMapCoordinates(DM dm, DM plex) 37660a96aa3bSJed Brown { 37670a96aa3bSJed Brown DM_Forest *forest; 37680a96aa3bSJed Brown DM_Forest_pforest *pforest; 37690a96aa3bSJed Brown p4est_geometry_t *geom; 37700a96aa3bSJed Brown PetscInt cLocalStart, cLocalEnd; 37710a96aa3bSJed Brown Vec coordLocalVec; 37720a96aa3bSJed Brown PetscScalar *coords; 37730a96aa3bSJed Brown p4est_topidx_t flt, llt, t; 37740a96aa3bSJed Brown p4est_tree_t *trees; 37750a96aa3bSJed Brown PetscErrorCode (*map)(DM,PetscInt, PetscInt, const PetscReal [], PetscReal [], void*); 37760a96aa3bSJed Brown void *mapCtx; 37770a96aa3bSJed Brown 37780a96aa3bSJed Brown PetscFunctionBegin; 37790a96aa3bSJed Brown forest = (DM_Forest*) dm->data; 37800a96aa3bSJed Brown pforest = (DM_Forest_pforest*) forest->data; 37810a96aa3bSJed Brown geom = pforest->topo->geom; 37829566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseCoordinateMapping(dm,&map,&mapCtx)); 37830a96aa3bSJed Brown if (!geom && !map) PetscFunctionReturn(0); 37849566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(plex,&coordLocalVec)); 37859566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordLocalVec,&coords)); 37860a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 37870a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 37880a96aa3bSJed Brown flt = pforest->forest->first_local_tree; 37890a96aa3bSJed Brown llt = pforest->forest->last_local_tree; 37900a96aa3bSJed Brown trees = (p4est_tree_t*) pforest->forest->trees->array; 37910a96aa3bSJed Brown if (map) { /* apply the map directly to the existing coordinates */ 37920a96aa3bSJed Brown PetscSection coordSec; 37930a96aa3bSJed Brown PetscInt coordStart, coordEnd, p, coordDim, p4estCoordDim, cStart, cEnd, cEndInterior; 37940a96aa3bSJed Brown DM base; 37950a96aa3bSJed Brown 37969566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex,0,&cStart,&cEnd)); 37979566063dSJacob Faibussowitsch PetscCall(DMPlexGetGhostCellStratum(plex,&cEndInterior,NULL)); 37980a96aa3bSJed Brown cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 37999566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm,&base)); 38009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(plex,&coordSec)); 38019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSec,&coordStart,&coordEnd)); 38029566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(plex,&coordDim)); 38030a96aa3bSJed Brown p4estCoordDim = PetscMin(coordDim,3); 38040a96aa3bSJed Brown for (p = coordStart; p < coordEnd; p++) { 38050a96aa3bSJed Brown PetscInt *star = NULL, starSize; 38060a96aa3bSJed Brown PetscInt dof, off, cell = -1, coarsePoint = -1; 38070a96aa3bSJed Brown PetscInt nCoords, i; 38089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSec,p,&dof)); 380908401ef6SPierre Jolivet PetscCheck(dof % coordDim == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Did not understand coordinate layout"); 38100a96aa3bSJed Brown nCoords = dof / coordDim; 38119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSec,p,&off)); 38129566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex,p,PETSC_FALSE,&starSize,&star)); 38130a96aa3bSJed Brown for (i = 0; i < starSize; i++) { 38140a96aa3bSJed Brown PetscInt point = star[2 * i]; 38150a96aa3bSJed Brown 38160a96aa3bSJed Brown if (cStart <= point && point < cEnd) { 38170a96aa3bSJed Brown cell = point; 38180a96aa3bSJed Brown break; 38190a96aa3bSJed Brown } 38200a96aa3bSJed Brown } 38219566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex,p,PETSC_FALSE,&starSize,&star)); 38220a96aa3bSJed Brown if (cell >= 0) { 38230a96aa3bSJed Brown if (cell < cLocalStart) { 38240a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array; 38250a96aa3bSJed Brown 38260a96aa3bSJed Brown coarsePoint = ghosts[cell].p.which_tree; 38270a96aa3bSJed Brown } else if (cell < cLocalEnd) { 38280a96aa3bSJed Brown cell -= cLocalStart; 38290a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 38300a96aa3bSJed Brown p4est_tree_t *tree = &(trees[t]); 38310a96aa3bSJed Brown 38320a96aa3bSJed Brown if (cell >= tree->quadrants_offset && (size_t) cell < tree->quadrants_offset + tree->quadrants.elem_count) { 38330a96aa3bSJed Brown coarsePoint = t; 38340a96aa3bSJed Brown break; 38350a96aa3bSJed Brown } 38360a96aa3bSJed Brown } 38370a96aa3bSJed Brown } else { 38380a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array; 38390a96aa3bSJed Brown 38400a96aa3bSJed Brown coarsePoint = ghosts[cell - cLocalEnd].p.which_tree; 38410a96aa3bSJed Brown } 38420a96aa3bSJed Brown } 38430a96aa3bSJed Brown for (i = 0; i < nCoords; i++) { 38440a96aa3bSJed Brown PetscScalar *coord = &coords[off + i * coordDim]; 38450a96aa3bSJed Brown PetscReal coordP4est[3] = {0.}; 38460a96aa3bSJed Brown PetscReal coordP4estMapped[3] = {0.}; 38470a96aa3bSJed Brown PetscInt j; 38480a96aa3bSJed Brown 38490a96aa3bSJed Brown for (j = 0; j < p4estCoordDim; j++) coordP4est[j] = PetscRealPart(coord[j]); 38509566063dSJacob Faibussowitsch PetscCall((map)(base,coarsePoint,p4estCoordDim,coordP4est,coordP4estMapped,mapCtx)); 38510a96aa3bSJed Brown for (j = 0; j < p4estCoordDim; j++) coord[j] = (PetscScalar) coordP4estMapped[j]; 38520a96aa3bSJed Brown } 38530a96aa3bSJed Brown } 38540a96aa3bSJed Brown } else { /* we have to transform coordinates back to the unit cube (where geom is defined), and then apply geom */ 38550a96aa3bSJed Brown PetscInt cStart, cEnd, cEndInterior; 38560a96aa3bSJed Brown 38579566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex,0,&cStart,&cEnd)); 38589566063dSJacob Faibussowitsch PetscCall(DMPlexGetGhostCellStratum(plex,&cEndInterior,NULL)); 38590a96aa3bSJed Brown cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 38600a96aa3bSJed Brown if (cLocalStart > 0) { 38610a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array; 38620a96aa3bSJed Brown PetscInt count; 38630a96aa3bSJed Brown 38640a96aa3bSJed Brown for (count = 0; count < cLocalStart; count++) { 38650a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count]; 38660a96aa3bSJed Brown p4est_topidx_t t = quad->p.which_tree; 38670a96aa3bSJed Brown 38689566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates_Cell(plex,geom,count,quad,t,pforest->topo->conn,coords)); 38690a96aa3bSJed Brown } 38700a96aa3bSJed Brown } 38710a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 38720a96aa3bSJed Brown p4est_tree_t *tree = &(trees[t]); 38730a96aa3bSJed Brown PetscInt offset = cLocalStart + tree->quadrants_offset, i; 38740a96aa3bSJed Brown PetscInt numQuads = (PetscInt) tree->quadrants.elem_count; 38750a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t*) tree->quadrants.array; 38760a96aa3bSJed Brown 38770a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 38780a96aa3bSJed Brown PetscInt count = i + offset; 38790a96aa3bSJed Brown 38809566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates_Cell(plex,geom,count,&quads[i],t,pforest->topo->conn,coords)); 38810a96aa3bSJed Brown } 38820a96aa3bSJed Brown } 38830a96aa3bSJed Brown if (cLocalEnd - cLocalStart < cEnd - cStart) { 38840a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array; 38850a96aa3bSJed Brown PetscInt numGhosts = (PetscInt) pforest->ghost->ghosts.elem_count; 38860a96aa3bSJed Brown PetscInt count; 38870a96aa3bSJed Brown 38880a96aa3bSJed Brown for (count = 0; count < numGhosts - cLocalStart; count++) { 38890a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count + cLocalStart]; 38900a96aa3bSJed Brown p4est_topidx_t t = quad->p.which_tree; 38910a96aa3bSJed Brown 38929566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates_Cell(plex,geom,count + cLocalEnd,quad,t,pforest->topo->conn,coords)); 38930a96aa3bSJed Brown } 38940a96aa3bSJed Brown } 38950a96aa3bSJed Brown } 38969566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordLocalVec,&coords)); 38970a96aa3bSJed Brown PetscFunctionReturn(0); 38980a96aa3bSJed Brown } 38990a96aa3bSJed Brown 39000a96aa3bSJed Brown static PetscErrorCode DMPforestLocalizeCoordinates(DM dm, DM plex) 39010a96aa3bSJed Brown { 39020a96aa3bSJed Brown DM_Forest *forest; 39030a96aa3bSJed Brown DM_Forest_pforest *pforest; 39040a96aa3bSJed Brown DM base; 39050a96aa3bSJed Brown Vec coordinates, cVec; 39060a96aa3bSJed Brown PetscSection oldSection, baseSection = NULL, newSection; 39070a96aa3bSJed Brown const PetscScalar *coords; 39080a96aa3bSJed Brown PetscScalar *coords2; 39090a96aa3bSJed Brown PetscInt cLocalStart, cLocalEnd, coarsePoint; 39100a96aa3bSJed Brown PetscInt cDim, newStart, newEnd, dof, cdof = -1; 39110a96aa3bSJed Brown PetscInt v, vStart, vEnd, cp, cStart, cEnd, cEndInterior, *coarsePoints; 39120a96aa3bSJed Brown PetscInt *localize, overlap; 39130a96aa3bSJed Brown p4est_topidx_t flt, llt, t; 39140a96aa3bSJed Brown p4est_tree_t *trees; 39150a96aa3bSJed Brown PetscBool isper, baseLocalized = PETSC_FALSE; 39160a96aa3bSJed Brown 39170a96aa3bSJed Brown PetscFunctionBegin; 39189566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm,&isper,NULL,NULL,NULL)); 39190a96aa3bSJed Brown if (!isper) PetscFunctionReturn(0); 39200a96aa3bSJed Brown /* we localize on all cells if we don't have a base DM or the base DM coordinates have not been localized */ 39219566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cDim)); 39220a96aa3bSJed Brown cdof = P4EST_CHILDREN*cDim; 39239566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm,&base)); 39240a96aa3bSJed Brown if (base) { 39259566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocalized(base,&baseLocalized)); 39260a96aa3bSJed Brown } 39270a96aa3bSJed Brown if (!baseLocalized) base = NULL; 39289566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &newStart, &newEnd)); 39290a96aa3bSJed Brown 39309566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm,&overlap)); 39319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(overlap ? newEnd - newStart : 0,&localize)); 39320a96aa3bSJed Brown 39339566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject) dm), &newSection)); 39349566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newSection, 1)); 39359566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newSection, 0, cDim)); 39369566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newSection, newStart, newEnd)); 39370a96aa3bSJed Brown 39389566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(plex, &oldSection)); 39399566063dSJacob Faibussowitsch if (base) PetscCall(DMGetCoordinateSection(base, &baseSection)); 39409566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(plex,0,&vStart,&vEnd)); 39410a96aa3bSJed Brown for (v = vStart; v < vEnd; ++v) { 39429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(oldSection, v, &dof)); 39439566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newSection, v, dof)); 39449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newSection, v, 0, dof)); 39450a96aa3bSJed Brown if (overlap) localize[v] = dof; 39460a96aa3bSJed Brown } 39470a96aa3bSJed Brown 39480a96aa3bSJed Brown forest = (DM_Forest*) dm->data; 39490a96aa3bSJed Brown pforest = (DM_Forest_pforest*) forest->data; 39500a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 39510a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 39520a96aa3bSJed Brown flt = pforest->forest->first_local_tree; 39530a96aa3bSJed Brown llt = pforest->forest->last_local_tree; 39540a96aa3bSJed Brown trees = (p4est_tree_t*) pforest->forest->trees->array; 39550a96aa3bSJed Brown 39560a96aa3bSJed Brown cp = 0; 39579566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex,0,&cStart,&cEnd)); 39589566063dSJacob Faibussowitsch PetscCall(DMPlexGetGhostCellStratum(plex,&cEndInterior,NULL)); 39590a96aa3bSJed Brown cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 39609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEnd-cStart,&coarsePoints)); 39610a96aa3bSJed Brown if (cLocalStart > 0) { 39620a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array; 39630a96aa3bSJed Brown PetscInt count; 39640a96aa3bSJed Brown 39650a96aa3bSJed Brown for (count = 0; count < cLocalStart; count++) { 39660a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count]; 39670a96aa3bSJed Brown coarsePoint = quad->p.which_tree; 39680a96aa3bSJed Brown 39699566063dSJacob Faibussowitsch if (baseSection) PetscCall(PetscSectionGetFieldDof(baseSection, coarsePoint, 0, &cdof)); 39709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newSection, count, cdof)); 39719566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newSection, count, 0, cdof)); 39720a96aa3bSJed Brown coarsePoints[cp++] = cdof ? coarsePoint : -1; 39730a96aa3bSJed Brown if (overlap) localize[count] = cdof; 39740a96aa3bSJed Brown } 39750a96aa3bSJed Brown } 39760a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 39770a96aa3bSJed Brown p4est_tree_t *tree = &(trees[t]); 39780a96aa3bSJed Brown PetscInt offset = cLocalStart + tree->quadrants_offset; 39790a96aa3bSJed Brown PetscInt numQuads = (PetscInt) tree->quadrants.elem_count; 39800a96aa3bSJed Brown PetscInt i; 39810a96aa3bSJed Brown 39820a96aa3bSJed Brown if (!numQuads) continue; 39830a96aa3bSJed Brown coarsePoint = t; 39849566063dSJacob Faibussowitsch if (baseSection) PetscCall(PetscSectionGetFieldDof(baseSection, coarsePoint, 0, &cdof)); 39850a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 39860a96aa3bSJed Brown PetscInt newCell = i + offset; 39870a96aa3bSJed Brown 39889566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newSection, newCell, cdof)); 39899566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newSection, newCell, 0, cdof)); 39900a96aa3bSJed Brown coarsePoints[cp++] = cdof ? coarsePoint : -1; 39910a96aa3bSJed Brown if (overlap) localize[newCell] = cdof; 39920a96aa3bSJed Brown } 39930a96aa3bSJed Brown } 39940a96aa3bSJed Brown if (cLocalEnd - cLocalStart < cEnd - cStart) { 39950a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array; 39960a96aa3bSJed Brown PetscInt numGhosts = (PetscInt) pforest->ghost->ghosts.elem_count; 39970a96aa3bSJed Brown PetscInt count; 39980a96aa3bSJed Brown 39990a96aa3bSJed Brown for (count = 0; count < numGhosts - cLocalStart; count++) { 40000a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count + cLocalStart]; 40010a96aa3bSJed Brown coarsePoint = quad->p.which_tree; 40020a96aa3bSJed Brown PetscInt newCell = count + cLocalEnd; 40030a96aa3bSJed Brown 40049566063dSJacob Faibussowitsch if (baseSection) PetscCall(PetscSectionGetFieldDof(baseSection, coarsePoint, 0, &cdof)); 40059566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newSection, newCell, cdof)); 40069566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newSection, newCell, 0, cdof)); 40070a96aa3bSJed Brown coarsePoints[cp++] = cdof ? coarsePoint : -1; 40080a96aa3bSJed Brown if (overlap) localize[newCell] = cdof; 40090a96aa3bSJed Brown } 40100a96aa3bSJed Brown } 40111dca8a05SBarry Smith PetscCheck(cp == cEnd - cStart,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected number of fine cells %" PetscInt_FMT " != %" PetscInt_FMT,cp,cEnd-cStart); 40120a96aa3bSJed Brown 40130a96aa3bSJed Brown if (base) { /* we need to localize on all the cells in the star of the coarse cell vertices */ 40140a96aa3bSJed Brown PetscInt *closure = NULL, closureSize; 40150a96aa3bSJed Brown PetscInt p, i, c, vStartBase, vEndBase, cStartBase, cEndBase; 40160a96aa3bSJed Brown 40179566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(base,0,&cStartBase,&cEndBase)); 40189566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(base,0,&vStartBase,&vEndBase)); 40190a96aa3bSJed Brown for (p = cStart; p < cEnd; p++) { 40200a96aa3bSJed Brown coarsePoint = coarsePoints[p-cStart]; 40210a96aa3bSJed Brown if (coarsePoint < 0) continue; 40229566063dSJacob Faibussowitsch if (baseSection) PetscCall(PetscSectionGetFieldDof(baseSection, coarsePoint, 0, &cdof)); 40239566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(base,coarsePoint,PETSC_TRUE,&closureSize,&closure)); 40240a96aa3bSJed Brown for (c = 0; c < closureSize; c++) { 40250a96aa3bSJed Brown PetscInt *star = NULL, starSize; 40260a96aa3bSJed Brown PetscInt j, v = closure[2 * c]; 40270a96aa3bSJed Brown 40280a96aa3bSJed Brown if (v < vStartBase || v > vEndBase) continue; 40299566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(base,v,PETSC_FALSE,&starSize,&star)); 40300a96aa3bSJed Brown for (j = 0; j < starSize; j++) { 40310a96aa3bSJed Brown PetscInt cell = star[2 * j]; 40320a96aa3bSJed Brown 40330a96aa3bSJed Brown if (cStartBase <= cell && cell < cEndBase) { 40340a96aa3bSJed Brown p4est_tree_t *tree; 40350a96aa3bSJed Brown PetscInt offset,numQuads; 40360a96aa3bSJed Brown 40370a96aa3bSJed Brown if (cell < flt || cell > llt) continue; 40380a96aa3bSJed Brown tree = &(trees[cell]); 40390a96aa3bSJed Brown offset = cLocalStart + tree->quadrants_offset; 40400a96aa3bSJed Brown numQuads = (PetscInt) tree->quadrants.elem_count; 40410a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 40420a96aa3bSJed Brown PetscInt newCell = i + offset; 40430a96aa3bSJed Brown 40449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newSection, newCell, cdof)); 40459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newSection, newCell, 0, cdof)); 40460a96aa3bSJed Brown if (overlap) localize[newCell] = cdof; 40470a96aa3bSJed Brown } 40480a96aa3bSJed Brown } 40490a96aa3bSJed Brown } 40509566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(base,v,PETSC_FALSE,&starSize,&star)); 40510a96aa3bSJed Brown } 40529566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(base,coarsePoint,PETSC_TRUE,&closureSize,&closure)); 40530a96aa3bSJed Brown } 40540a96aa3bSJed Brown } 40559566063dSJacob Faibussowitsch PetscCall(PetscFree(coarsePoints)); 40560a96aa3bSJed Brown 40570a96aa3bSJed Brown /* final consensus with overlap */ 40580a96aa3bSJed Brown if (overlap) { 40590a96aa3bSJed Brown PetscSF sf; 40600a96aa3bSJed Brown PetscInt *localizeGlobal; 40610a96aa3bSJed Brown 40629566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(plex,&sf)); 40639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newEnd-newStart,&localizeGlobal)); 40640a96aa3bSJed Brown for (v = newStart; v < newEnd; v++) localizeGlobal[v - newStart] = localize[v - newStart]; 40659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf,MPIU_INT,localize,localizeGlobal,MPI_REPLACE)); 40669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf,MPIU_INT,localize,localizeGlobal,MPI_REPLACE)); 40670a96aa3bSJed Brown for (v = newStart; v < newEnd; v++) { 40689566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newSection, v, localizeGlobal[v-newStart])); 40699566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newSection, v, 0, localizeGlobal[v-newStart])); 40700a96aa3bSJed Brown } 40719566063dSJacob Faibussowitsch PetscCall(PetscFree(localizeGlobal)); 40720a96aa3bSJed Brown } 40739566063dSJacob Faibussowitsch PetscCall(PetscFree(localize)); 40749566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newSection)); 40759566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldSection)); 40769566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(plex, cDim, newSection)); 40779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &v)); 40789566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &cVec)); 40799566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)cVec,"coordinates")); 40809566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(cVec, cDim)); 40819566063dSJacob Faibussowitsch PetscCall(VecSetSizes(cVec, v, PETSC_DETERMINE)); 40829566063dSJacob Faibussowitsch PetscCall(VecSetType(cVec, VECSTANDARD)); 40839566063dSJacob Faibussowitsch PetscCall(VecSet(cVec, PETSC_MIN_REAL)); 40840a96aa3bSJed Brown 40850a96aa3bSJed Brown /* Copy over vertex coordinates */ 40869566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(plex, &coordinates)); 408728b400f6SJacob Faibussowitsch PetscCheck(coordinates,PetscObjectComm((PetscObject)plex),PETSC_ERR_SUP,"Missing local coordinates vector"); 40889566063dSJacob Faibussowitsch PetscCall(VecGetArray(cVec, &coords2)); 40899566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &coords)); 40900a96aa3bSJed Brown for (v = vStart; v < vEnd; ++v) { 40910a96aa3bSJed Brown PetscInt d, off,off2; 40920a96aa3bSJed Brown 40939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(oldSection, v, &dof)); 40949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(oldSection, v, &off)); 40959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newSection, v, &off2)); 40960a96aa3bSJed Brown for (d = 0; d < dof; ++d) coords2[off2+d] = coords[off+d]; 40970a96aa3bSJed Brown } 40989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &coords)); 40990a96aa3bSJed Brown 41000a96aa3bSJed Brown /* Localize coordinates on cells if needed */ 41010a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 41020a96aa3bSJed Brown p4est_tree_t *tree = &(trees[t]); 41030a96aa3bSJed Brown const double *v = pforest->topo->conn->vertices; 41040a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t*) tree->quadrants.array; 41050a96aa3bSJed Brown PetscInt offset = cLocalStart + tree->quadrants_offset; 41060a96aa3bSJed Brown PetscInt numQuads = (PetscInt) tree->quadrants.elem_count; 41070a96aa3bSJed Brown p4est_topidx_t vt[8] = {0,0,0,0,0,0,0,0}; 41080a96aa3bSJed Brown PetscInt i,k; 41090a96aa3bSJed Brown 41100a96aa3bSJed Brown if (!numQuads) continue; 41110a96aa3bSJed Brown for (k = 0; k < P4EST_CHILDREN; ++k) { 41120a96aa3bSJed Brown vt[k] = pforest->topo->conn->tree_to_vertex[t * P4EST_CHILDREN + k]; 41130a96aa3bSJed Brown } 41140a96aa3bSJed Brown 41150a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 41160a96aa3bSJed Brown p4est_quadrant_t *quad = &quads[i]; 41170a96aa3bSJed Brown const PetscReal intsize = 1.0 / P4EST_ROOT_LEN; 41180a96aa3bSJed Brown PetscReal h2; 41190a96aa3bSJed Brown PetscScalar xyz[3]; 41200a96aa3bSJed Brown #ifdef P4_TO_P8 41210a96aa3bSJed Brown PetscInt zi; 41220a96aa3bSJed Brown #endif 41230a96aa3bSJed Brown PetscInt yi,xi; 41240a96aa3bSJed Brown PetscInt off2; 41250a96aa3bSJed Brown PetscInt newCell = i + offset; 41260a96aa3bSJed Brown 41279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(newSection, newCell, 0, &cdof)); 41280a96aa3bSJed Brown if (!cdof) continue; 41290a96aa3bSJed Brown 41300a96aa3bSJed Brown h2 = .5 * intsize * P4EST_QUADRANT_LEN (quad->level); 41310a96aa3bSJed Brown k = 0; 41329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newSection, newCell, &off2)); 41330a96aa3bSJed Brown #ifdef P4_TO_P8 41340a96aa3bSJed Brown for (zi = 0; zi < 2; ++zi) { 41350a96aa3bSJed Brown const PetscReal eta_z = intsize * quad->z + h2 * (1. + (zi * 2 - 1)); 41360a96aa3bSJed Brown #else 41370a96aa3bSJed Brown { 41380a96aa3bSJed Brown const PetscReal eta_z = 0.0; 41390a96aa3bSJed Brown #endif 41400a96aa3bSJed Brown for (yi = 0; yi < 2; ++yi) { 41410a96aa3bSJed Brown const PetscReal eta_y = intsize * quad->y + h2 * (1. + (yi * 2 - 1)); 41420a96aa3bSJed Brown for (xi = 0; xi < 2; ++xi) { 41430a96aa3bSJed Brown const PetscReal eta_x = intsize * quad->x + h2 * (1. + (xi * 2 - 1)); 41440a96aa3bSJed Brown PetscInt j; 41450a96aa3bSJed Brown 41460a96aa3bSJed Brown for (j = 0; j < 3; ++j) { 41470a96aa3bSJed Brown xyz[j] = ((1. - eta_z) * ((1. - eta_y) * ((1. - eta_x) * v[3 * vt[0] + j] + 41480a96aa3bSJed Brown eta_x * v[3 * vt[1] + j]) + 41490a96aa3bSJed Brown eta_y * ((1. - eta_x) * v[3 * vt[2] + j] + 41500a96aa3bSJed Brown eta_x * v[3 * vt[3] + j])) 41510a96aa3bSJed Brown + eta_z * ((1. - eta_y) * ((1. - eta_x) * v[3 * vt[4] + j] + 41520a96aa3bSJed Brown eta_x * v[3 * vt[5] + j]) + 41530a96aa3bSJed Brown eta_y * ((1. - eta_x) * v[3 * vt[6] + j] + 41540a96aa3bSJed Brown eta_x * v[3 * vt[7] + j]))); 41550a96aa3bSJed Brown } 41560a96aa3bSJed Brown for (j = 0; j < cDim; ++j) coords2[off2 + cDim*P4estVertToPetscVert[k] + j] = xyz[j]; 41570a96aa3bSJed Brown ++k; 41580a96aa3bSJed Brown } 41590a96aa3bSJed Brown } 41600a96aa3bSJed Brown } 41610a96aa3bSJed Brown } 41620a96aa3bSJed Brown } 41639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cVec, &coords2)); 41649566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(plex, cVec)); 41659566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 41669566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 41679566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&oldSection)); 41680a96aa3bSJed Brown PetscFunctionReturn(0); 41690a96aa3bSJed Brown } 41700a96aa3bSJed Brown 41710a96aa3bSJed Brown #define DMForestClearAdaptivityForest_pforest _append_pforest(DMForestClearAdaptivityForest) 41720a96aa3bSJed Brown static PetscErrorCode DMForestClearAdaptivityForest_pforest(DM dm) 41730a96aa3bSJed Brown { 41740a96aa3bSJed Brown DM_Forest *forest; 41750a96aa3bSJed Brown DM_Forest_pforest *pforest; 41760a96aa3bSJed Brown 41770a96aa3bSJed Brown PetscFunctionBegin; 41780a96aa3bSJed Brown forest = (DM_Forest*) dm->data; 41790a96aa3bSJed Brown pforest = (DM_Forest_pforest *) forest->data; 41809566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(pforest->pointAdaptToSelfSF))); 41819566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(pforest->pointSelfToAdaptSF))); 41829566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointAdaptToSelfCids)); 41839566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointSelfToAdaptCids)); 41840a96aa3bSJed Brown PetscFunctionReturn(0); 41850a96aa3bSJed Brown } 41860a96aa3bSJed Brown 41870a96aa3bSJed Brown static PetscErrorCode DMConvert_pforest_plex(DM dm, DMType newtype, DM *plex) 41880a96aa3bSJed Brown { 41890a96aa3bSJed Brown DM_Forest *forest; 41900a96aa3bSJed Brown DM_Forest_pforest *pforest; 41910a96aa3bSJed Brown DM refTree, newPlex, base; 41920a96aa3bSJed Brown PetscInt adjDim, adjCodim, coordDim; 41930a96aa3bSJed Brown MPI_Comm comm; 41940a96aa3bSJed Brown PetscBool isPforest; 41950a96aa3bSJed Brown PetscInt dim; 41960a96aa3bSJed Brown PetscInt overlap; 41970a96aa3bSJed Brown p4est_connect_type_t ctype; 41980a96aa3bSJed Brown p4est_locidx_t first_local_quad = -1; 41990a96aa3bSJed Brown sc_array_t *points_per_dim, *cone_sizes, *cones, *cone_orientations, *coords, *children, *parents, *childids, *leaves, *remotes; 42000a96aa3bSJed Brown PetscSection parentSection; 42010a96aa3bSJed Brown PetscSF pointSF; 42020a96aa3bSJed Brown size_t zz, count; 42030a96aa3bSJed Brown PetscInt pStart, pEnd; 42040a96aa3bSJed Brown DMLabel ghostLabelBase = NULL; 42050a96aa3bSJed Brown 42060a96aa3bSJed Brown PetscFunctionBegin; 42070a96aa3bSJed Brown 42080a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 42090a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)dm); 42109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm,DMPFOREST,&isPforest)); 421128b400f6SJacob Faibussowitsch PetscCheck(isPforest,comm,PETSC_ERR_ARG_WRONG,"Expected DM type %s, got %s",DMPFOREST,((PetscObject)dm)->type_name); 42129566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm,&dim)); 421363a3b9bcSJacob Faibussowitsch PetscCheck(dim == P4EST_DIM,comm,PETSC_ERR_ARG_WRONG,"Expected DM dimension %d, got %" PetscInt_FMT,P4EST_DIM,dim); 42140a96aa3bSJed Brown forest = (DM_Forest*) dm->data; 42150a96aa3bSJed Brown pforest = (DM_Forest_pforest*) forest->data; 42169566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm,&base)); 42170a96aa3bSJed Brown if (base) { 42189566063dSJacob Faibussowitsch PetscCall(DMGetLabel(base,"ghost",&ghostLabelBase)); 42190a96aa3bSJed Brown } 42200a96aa3bSJed Brown if (!pforest->plex) { 42210a96aa3bSJed Brown PetscMPIInt size; 42220a96aa3bSJed Brown 42239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 42249566063dSJacob Faibussowitsch PetscCall(DMCreate(comm,&newPlex)); 42259566063dSJacob Faibussowitsch PetscCall(DMSetType(newPlex,DMPLEX)); 42269566063dSJacob Faibussowitsch PetscCall(DMSetMatType(newPlex,dm->mattype)); 42270a96aa3bSJed Brown /* share labels */ 42289566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, newPlex, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 42299566063dSJacob Faibussowitsch PetscCall(DMForestGetAdjacencyDimension(dm,&adjDim)); 42309566063dSJacob Faibussowitsch PetscCall(DMForestGetAdjacencyCodimension(dm,&adjCodim)); 42319566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm,&coordDim)); 42320a96aa3bSJed Brown if (adjDim == 0) { 42330a96aa3bSJed Brown ctype = P4EST_CONNECT_FULL; 42340a96aa3bSJed Brown } else if (adjCodim == 1) { 42350a96aa3bSJed Brown ctype = P4EST_CONNECT_FACE; 42360a96aa3bSJed Brown #if defined(P4_TO_P8) 42370a96aa3bSJed Brown } else if (adjDim == 1) { 42380a96aa3bSJed Brown ctype = P8EST_CONNECT_EDGE; 42390a96aa3bSJed Brown #endif 42400a96aa3bSJed Brown } else { 424163a3b9bcSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONG,"Invalid adjacency dimension %" PetscInt_FMT,adjDim); 42420a96aa3bSJed Brown } 424363a3b9bcSJacob Faibussowitsch PetscCheck(ctype == P4EST_CONNECT_FULL,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONG,"Adjacency dimension %" PetscInt_FMT " / codimension %" PetscInt_FMT " not supported yet",adjDim,adjCodim); 42449566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm,&overlap)); 424560667520SVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(newPlex,NULL,overlap)); 42460a96aa3bSJed Brown 42470a96aa3bSJed Brown points_per_dim = sc_array_new(sizeof(p4est_locidx_t)); 42480a96aa3bSJed Brown cone_sizes = sc_array_new(sizeof(p4est_locidx_t)); 42490a96aa3bSJed Brown cones = sc_array_new(sizeof(p4est_locidx_t)); 42500a96aa3bSJed Brown cone_orientations = sc_array_new(sizeof(p4est_locidx_t)); 42510a96aa3bSJed Brown coords = sc_array_new(3 * sizeof(double)); 42520a96aa3bSJed Brown children = sc_array_new(sizeof(p4est_locidx_t)); 42530a96aa3bSJed Brown parents = sc_array_new(sizeof(p4est_locidx_t)); 42540a96aa3bSJed Brown childids = sc_array_new(sizeof(p4est_locidx_t)); 42550a96aa3bSJed Brown leaves = sc_array_new(sizeof(p4est_locidx_t)); 42560a96aa3bSJed Brown remotes = sc_array_new(2 * sizeof(p4est_locidx_t)); 42570a96aa3bSJed Brown 42580a96aa3bSJed Brown PetscStackCallP4est(p4est_get_plex_data_ext,(pforest->forest,&pforest->ghost,&pforest->lnodes,ctype,(int)((size > 1) ? overlap : 0),&first_local_quad,points_per_dim,cone_sizes,cones,cone_orientations,coords,children,parents,childids,leaves,remotes,1)); 42590a96aa3bSJed Brown 42600a96aa3bSJed Brown pforest->cLocalStart = (PetscInt) first_local_quad; 42610a96aa3bSJed Brown pforest->cLocalEnd = pforest->cLocalStart + (PetscInt) pforest->forest->local_num_quadrants; 42629566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(points_per_dim)); 42639566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_sizes)); 42649566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cones)); 42659566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_orientations)); 42669566063dSJacob Faibussowitsch PetscCall(coords_double_to_PetscScalar(coords, coordDim)); 42679566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(children)); 42689566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(parents)); 42699566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(childids)); 42709566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(leaves)); 42719566063dSJacob Faibussowitsch PetscCall(locidx_pair_to_PetscSFNode(remotes)); 42720a96aa3bSJed Brown 42739566063dSJacob Faibussowitsch PetscCall(DMSetDimension(newPlex,P4EST_DIM)); 42749566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(newPlex,coordDim)); 42759566063dSJacob Faibussowitsch PetscCall(DMPlexSetMaxProjectionHeight(newPlex,P4EST_DIM - 1)); 42769566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromDAG(newPlex,P4EST_DIM,(PetscInt*)points_per_dim->array,(PetscInt*)cone_sizes->array,(PetscInt*)cones->array,(PetscInt*)cone_orientations->array,(PetscScalar*)coords->array)); 42779566063dSJacob Faibussowitsch PetscCall(DMPlexConvertOldOrientations_Internal(newPlex)); 42789566063dSJacob Faibussowitsch PetscCall(DMCreateReferenceTree_pforest(comm,&refTree)); 42799566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(newPlex,refTree)); 42809566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm,&parentSection)); 42819566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(newPlex,&pStart,&pEnd)); 42829566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(parentSection,pStart,pEnd)); 42830a96aa3bSJed Brown count = children->elem_count; 42840a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 42850a96aa3bSJed Brown PetscInt child = *((PetscInt*) sc_array_index(children,zz)); 42860a96aa3bSJed Brown 42879566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(parentSection,child,1)); 42880a96aa3bSJed Brown } 42899566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(parentSection)); 42909566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(newPlex,parentSection,(PetscInt*)parents->array,(PetscInt*)childids->array)); 42919566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&parentSection)); 42929566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,&pointSF)); 42930a96aa3bSJed Brown /* 42940a96aa3bSJed Brown These arrays defining the sf are from the p4est library, but the code there shows the leaves being populated in increasing order. 42950a96aa3bSJed Brown https://gitlab.com/petsc/petsc/merge_requests/2248#note_240186391 42960a96aa3bSJed Brown */ 42979566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(pointSF,pEnd - pStart,(PetscInt)leaves->elem_count,(PetscInt*)leaves->array,PETSC_COPY_VALUES,(PetscSFNode*)remotes->array,PETSC_COPY_VALUES)); 42989566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(newPlex,pointSF)); 42999566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(dm,pointSF)); 43000a96aa3bSJed Brown { 43010a96aa3bSJed Brown DM coordDM; 43020a96aa3bSJed Brown 43039566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(newPlex,&coordDM)); 43049566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(coordDM,pointSF)); 43050a96aa3bSJed Brown } 43069566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pointSF)); 43070a96aa3bSJed Brown sc_array_destroy (points_per_dim); 43080a96aa3bSJed Brown sc_array_destroy (cone_sizes); 43090a96aa3bSJed Brown sc_array_destroy (cones); 43100a96aa3bSJed Brown sc_array_destroy (cone_orientations); 43110a96aa3bSJed Brown sc_array_destroy (coords); 43120a96aa3bSJed Brown sc_array_destroy (children); 43130a96aa3bSJed Brown sc_array_destroy (parents); 43140a96aa3bSJed Brown sc_array_destroy (childids); 43150a96aa3bSJed Brown sc_array_destroy (leaves); 43160a96aa3bSJed Brown sc_array_destroy (remotes); 43170a96aa3bSJed Brown 43180a96aa3bSJed Brown { 43190a96aa3bSJed Brown PetscBool isper; 43200a96aa3bSJed Brown const PetscReal *maxCell, *L; 43210a96aa3bSJed Brown const DMBoundaryType *bd; 43220a96aa3bSJed Brown 43239566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd)); 43249566063dSJacob Faibussowitsch PetscCall(DMSetPeriodicity(newPlex,isper,maxCell,L,bd)); 43259566063dSJacob Faibussowitsch PetscCall(DMPforestLocalizeCoordinates(dm,newPlex)); 43260a96aa3bSJed Brown } 43270a96aa3bSJed Brown 43280a96aa3bSJed Brown if (overlap > 0) { /* the p4est routine can't set all of the coordinates in its routine if there is overlap */ 43290a96aa3bSJed Brown Vec coordsGlobal, coordsLocal; 43300a96aa3bSJed Brown const PetscScalar *globalArray; 43310a96aa3bSJed Brown PetscScalar *localArray; 43320a96aa3bSJed Brown PetscSF coordSF; 43330a96aa3bSJed Brown DM coordDM; 43340a96aa3bSJed Brown 43359566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(newPlex,&coordDM)); 43369566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(coordDM,&coordSF)); 43379566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(newPlex, &coordsGlobal)); 43389566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(newPlex, &coordsLocal)); 43399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordsGlobal, &globalArray)); 43409566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordsLocal, &localArray)); 43419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coordSF,MPIU_SCALAR,globalArray,localArray,MPI_REPLACE)); 43429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coordSF,MPIU_SCALAR,globalArray,localArray,MPI_REPLACE)); 43439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordsLocal, &localArray)); 43449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordsGlobal, &globalArray)); 43459566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(newPlex, coordsLocal)); 43460a96aa3bSJed Brown } 43479566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates(dm,newPlex)); 43480a96aa3bSJed Brown 43490a96aa3bSJed Brown pforest->plex = newPlex; 43500a96aa3bSJed Brown 43510a96aa3bSJed Brown /* copy labels */ 43529566063dSJacob Faibussowitsch PetscCall(DMPforestLabelsFinalize(dm,newPlex)); 43530a96aa3bSJed Brown 43540a96aa3bSJed Brown if (ghostLabelBase || pforest->ghostName) { /* we have to do this after copying labels because the labels drive the construction of ghost cells */ 43550a96aa3bSJed Brown PetscInt numAdded; 43560a96aa3bSJed Brown DM newPlexGhosted; 43570a96aa3bSJed Brown void *ctx; 43580a96aa3bSJed Brown 43599566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells(newPlex,pforest->ghostName,&numAdded,&newPlexGhosted)); 43609566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(newPlex,&ctx)); 43619566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(newPlexGhosted,ctx)); 43620a96aa3bSJed Brown /* we want the sf for the ghost dm to be the one for the p4est dm as well */ 43639566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(newPlexGhosted,&pointSF)); 43649566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(dm,pointSF)); 43659566063dSJacob Faibussowitsch PetscCall(DMDestroy(&newPlex)); 43669566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(newPlexGhosted,refTree)); 43679566063dSJacob Faibussowitsch PetscCall(DMForestClearAdaptivityForest_pforest(dm)); 43680a96aa3bSJed Brown newPlex = newPlexGhosted; 43690a96aa3bSJed Brown 43700a96aa3bSJed Brown /* share the labels back */ 43719566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(dm)); 43729566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(newPlex, dm, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 43730a96aa3bSJed Brown pforest->plex = newPlex; 43740a96aa3bSJed Brown } 43759566063dSJacob Faibussowitsch PetscCall(DMDestroy(&refTree)); 43760a96aa3bSJed Brown if (dm->setfromoptionscalled) { 43775f80ce2aSJacob Faibussowitsch 4378d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)newPlex); 43799566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions_NonRefinement_Plex(PetscOptionsObject,newPlex)); 43809566063dSJacob Faibussowitsch PetscCall(PetscObjectProcessOptionsHandlers(PetscOptionsObject,(PetscObject)newPlex)); 4381d0609cedSBarry Smith PetscOptionsEnd(); 43820a96aa3bSJed Brown } 43839566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(newPlex,NULL,"-dm_p4est_plex_view")); 43840a96aa3bSJed Brown { 43850a96aa3bSJed Brown PetscSection coordsSec; 43860a96aa3bSJed Brown Vec coords; 43870a96aa3bSJed Brown PetscInt cDim; 43880a96aa3bSJed Brown 43899566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(newPlex,&cDim)); 43909566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(newPlex,&coordsSec)); 43919566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dm,cDim,coordsSec)); 43929566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(newPlex,&coords)); 43939566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dm,coords)); 43940a96aa3bSJed Brown } 43950a96aa3bSJed Brown } 43960a96aa3bSJed Brown newPlex = pforest->plex; 43970a96aa3bSJed Brown if (plex) { 43980a96aa3bSJed Brown DM coordDM; 43990a96aa3bSJed Brown 44009566063dSJacob Faibussowitsch PetscCall(DMClone(newPlex,plex)); 44019566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(newPlex,&coordDM)); 44029566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDM(*plex,coordDM)); 44039566063dSJacob Faibussowitsch PetscCall(DMShareDiscretization(dm,*plex)); 44040a96aa3bSJed Brown } 44050a96aa3bSJed Brown PetscFunctionReturn(0); 44060a96aa3bSJed Brown } 44070a96aa3bSJed Brown 44080a96aa3bSJed Brown static PetscErrorCode DMSetFromOptions_pforest(PetscOptionItems *PetscOptionsObject,DM dm) 44090a96aa3bSJed Brown { 44100a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data; 44110a96aa3bSJed Brown char stringBuffer[256]; 44120a96aa3bSJed Brown PetscBool flg; 44130a96aa3bSJed Brown 44140a96aa3bSJed Brown PetscFunctionBegin; 44159566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions_Forest(PetscOptionsObject,dm)); 4416d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject,"DM" P4EST_STRING " options"); 44179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_p4est_partition_for_coarsening","partition forest to allow for coarsening","DMP4estSetPartitionForCoarsening",pforest->partition_for_coarsening,&(pforest->partition_for_coarsening),NULL)); 44189566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-dm_p4est_ghost_label_name","the name of the ghost label when converting from a DMPlex",NULL,NULL,stringBuffer,sizeof(stringBuffer),&flg)); 4419d0609cedSBarry Smith PetscOptionsHeadEnd(); 44200a96aa3bSJed Brown if (flg) { 44219566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->ghostName)); 44229566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(stringBuffer,&pforest->ghostName)); 44230a96aa3bSJed Brown } 44240a96aa3bSJed Brown PetscFunctionReturn(0); 44250a96aa3bSJed Brown } 44260a96aa3bSJed Brown 44270a96aa3bSJed Brown #if !defined(P4_TO_P8) 44280a96aa3bSJed Brown #define DMPforestGetPartitionForCoarsening DMP4estGetPartitionForCoarsening 44290a96aa3bSJed Brown #define DMPforestSetPartitionForCoarsening DMP4estSetPartitionForCoarsening 44300a96aa3bSJed Brown #else 44310a96aa3bSJed Brown #define DMPforestGetPartitionForCoarsening DMP8estGetPartitionForCoarsening 44320a96aa3bSJed Brown #define DMPforestSetPartitionForCoarsening DMP8estSetPartitionForCoarsening 44330a96aa3bSJed Brown #endif 44340a96aa3bSJed Brown 44350a96aa3bSJed Brown PETSC_EXTERN PetscErrorCode DMPforestGetPartitionForCoarsening(DM dm, PetscBool *flg) 44360a96aa3bSJed Brown { 44370a96aa3bSJed Brown DM_Forest_pforest *pforest; 44380a96aa3bSJed Brown 44390a96aa3bSJed Brown PetscFunctionBegin; 44400a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 44410a96aa3bSJed Brown pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data; 44420a96aa3bSJed Brown *flg = pforest->partition_for_coarsening; 44430a96aa3bSJed Brown PetscFunctionReturn(0); 44440a96aa3bSJed Brown } 44450a96aa3bSJed Brown 44460a96aa3bSJed Brown PETSC_EXTERN PetscErrorCode DMPforestSetPartitionForCoarsening(DM dm, PetscBool flg) 44470a96aa3bSJed Brown { 44480a96aa3bSJed Brown DM_Forest_pforest *pforest; 44490a96aa3bSJed Brown 44500a96aa3bSJed Brown PetscFunctionBegin; 44510a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 44520a96aa3bSJed Brown pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data; 44530a96aa3bSJed Brown pforest->partition_for_coarsening = flg; 44540a96aa3bSJed Brown PetscFunctionReturn(0); 44550a96aa3bSJed Brown } 44560a96aa3bSJed Brown 44570a96aa3bSJed Brown static PetscErrorCode DMPforestGetPlex(DM dm,DM *plex) 44580a96aa3bSJed Brown { 44590a96aa3bSJed Brown DM_Forest_pforest *pforest; 44600a96aa3bSJed Brown 44610a96aa3bSJed Brown PetscFunctionBegin; 44620a96aa3bSJed Brown if (plex) *plex = NULL; 44639566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 44640a96aa3bSJed Brown pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data; 44650a96aa3bSJed Brown if (!pforest->plex) { 44669566063dSJacob Faibussowitsch PetscCall(DMConvert_pforest_plex(dm,DMPLEX,NULL)); 44670a96aa3bSJed Brown } 44689566063dSJacob Faibussowitsch PetscCall(DMShareDiscretization(dm,pforest->plex)); 44690a96aa3bSJed Brown if (plex) *plex = pforest->plex; 44700a96aa3bSJed Brown PetscFunctionReturn(0); 44710a96aa3bSJed Brown } 44720a96aa3bSJed Brown 44730a96aa3bSJed Brown #define DMCreateInterpolation_pforest _append_pforest(DMCreateInterpolation) 44740a96aa3bSJed Brown static PetscErrorCode DMCreateInterpolation_pforest(DM dmCoarse, DM dmFine, Mat *interpolation, Vec *scaling) 44750a96aa3bSJed Brown { 44760a96aa3bSJed Brown PetscSection gsc, gsf; 44770a96aa3bSJed Brown PetscInt m, n; 44780a96aa3bSJed Brown DM cdm; 44790a96aa3bSJed Brown 44800a96aa3bSJed Brown PetscFunctionBegin; 44819566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 44829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &m)); 44839566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 44849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &n)); 44850a96aa3bSJed Brown 44869566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject) dmFine), interpolation)); 44879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*interpolation, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 44889566063dSJacob Faibussowitsch PetscCall(MatSetType(*interpolation, MATAIJ)); 44890a96aa3bSJed Brown 44909566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 449108401ef6SPierre Jolivet PetscCheck(cdm == dmCoarse,PetscObjectComm((PetscObject)dmFine),PETSC_ERR_SUP,"Only interpolation from coarse DM for now"); 44920a96aa3bSJed Brown 44930a96aa3bSJed Brown { 44940a96aa3bSJed Brown DM plexF, plexC; 44950a96aa3bSJed Brown PetscSF sf; 44960a96aa3bSJed Brown PetscInt *cids; 44970a96aa3bSJed Brown PetscInt dofPerDim[4] = {1,1,1,1}; 44980a96aa3bSJed Brown 44999566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmCoarse,&plexC)); 45009566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmFine,&plexF)); 45019566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids)); 45029566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 45039566063dSJacob Faibussowitsch PetscCall(DMPlexComputeInterpolatorTree(plexC, plexF, sf, cids, *interpolation)); 45049566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 45059566063dSJacob Faibussowitsch PetscCall(PetscFree(cids)); 45060a96aa3bSJed Brown } 45079566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*interpolation, NULL, "-interp_mat_view")); 45080a96aa3bSJed Brown /* Use naive scaling */ 45099566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolationScale(dmCoarse, dmFine, *interpolation, scaling)); 45100a96aa3bSJed Brown PetscFunctionReturn(0); 45110a96aa3bSJed Brown } 45120a96aa3bSJed Brown 45130a96aa3bSJed Brown #define DMCreateInjection_pforest _append_pforest(DMCreateInjection) 45140a96aa3bSJed Brown static PetscErrorCode DMCreateInjection_pforest(DM dmCoarse, DM dmFine, Mat *injection) 45150a96aa3bSJed Brown { 45160a96aa3bSJed Brown PetscSection gsc, gsf; 45170a96aa3bSJed Brown PetscInt m, n; 45180a96aa3bSJed Brown DM cdm; 45190a96aa3bSJed Brown 45200a96aa3bSJed Brown PetscFunctionBegin; 45219566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 45229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &n)); 45239566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 45249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &m)); 45250a96aa3bSJed Brown 45269566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject) dmFine), injection)); 45279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*injection, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 45289566063dSJacob Faibussowitsch PetscCall(MatSetType(*injection, MATAIJ)); 45290a96aa3bSJed Brown 45309566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 453108401ef6SPierre Jolivet PetscCheck(cdm == dmCoarse,PetscObjectComm((PetscObject)dmFine),PETSC_ERR_SUP,"Only injection to coarse DM for now"); 45320a96aa3bSJed Brown 45330a96aa3bSJed Brown { 45340a96aa3bSJed Brown DM plexF, plexC; 45350a96aa3bSJed Brown PetscSF sf; 45360a96aa3bSJed Brown PetscInt *cids; 45370a96aa3bSJed Brown PetscInt dofPerDim[4] = {1,1,1,1}; 45380a96aa3bSJed Brown 45399566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmCoarse,&plexC)); 45409566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmFine,&plexF)); 45419566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids)); 45429566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 45439566063dSJacob Faibussowitsch PetscCall(DMPlexComputeInjectorTree(plexC, plexF, sf, cids, *injection)); 45449566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 45459566063dSJacob Faibussowitsch PetscCall(PetscFree(cids)); 45460a96aa3bSJed Brown } 45479566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*injection, NULL, "-inject_mat_view")); 45480a96aa3bSJed Brown /* Use naive scaling */ 45490a96aa3bSJed Brown PetscFunctionReturn(0); 45500a96aa3bSJed Brown } 45510a96aa3bSJed Brown 45520a96aa3bSJed Brown #define DMForestTransferVecFromBase_pforest _append_pforest(DMForestTransferVecFromBase) 45530a96aa3bSJed Brown static PetscErrorCode DMForestTransferVecFromBase_pforest(DM dm, Vec vecIn, Vec vecOut) 45540a96aa3bSJed Brown { 45550a96aa3bSJed Brown DM dmIn, dmVecIn, base, basec, plex, coarseDM; 45560a96aa3bSJed Brown DM *hierarchy; 45570a96aa3bSJed Brown PetscSF sfRed = NULL; 45580a96aa3bSJed Brown PetscDS ds; 45590a96aa3bSJed Brown Vec vecInLocal, vecOutLocal; 45600a96aa3bSJed Brown DMLabel subpointMap; 45610a96aa3bSJed Brown PetscInt minLevel, mh, n_hi, i; 45620a96aa3bSJed Brown PetscBool hiforest, *hierarchy_forest; 45630a96aa3bSJed Brown 45640a96aa3bSJed Brown PetscFunctionBegin; 45659566063dSJacob Faibussowitsch PetscCall(VecGetDM(vecIn,&dmVecIn)); 45669566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmVecIn,&ds)); 456728b400f6SJacob Faibussowitsch PetscCheck(ds,PetscObjectComm((PetscObject)dmVecIn),PETSC_ERR_SUP,"Cannot transfer without a PetscDS object"); 45680a96aa3bSJed Brown { /* we cannot stick user contexts into function callbacks for DMProjectFieldLocal! */ 45690a96aa3bSJed Brown PetscSection section; 45700a96aa3bSJed Brown PetscInt Nf; 45710a96aa3bSJed Brown 45729566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmVecIn,§ion)); 45739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section,&Nf)); 457463a3b9bcSJacob Faibussowitsch PetscCheck(Nf <= 3,PetscObjectComm((PetscObject)dmVecIn),PETSC_ERR_SUP,"Number of fields %" PetscInt_FMT " are currently not supported! Send an email at petsc-dev@mcs.anl.gov",Nf); 45750a96aa3bSJed Brown } 45769566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm,&minLevel)); 457763a3b9bcSJacob Faibussowitsch PetscCheck(!minLevel,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Cannot transfer with minimum refinement set to %" PetscInt_FMT ". Rerun with DMForestSetMinimumRefinement(dm,0)",minLevel); 45789566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm,&base)); 457928b400f6SJacob Faibussowitsch PetscCheck(base,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Missing base DM"); 45800a96aa3bSJed Brown 45819566063dSJacob Faibussowitsch PetscCall(VecSet(vecOut,0.0)); 45820a96aa3bSJed Brown if (dmVecIn == base) { /* sequential runs */ 45839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)vecIn)); 45840a96aa3bSJed Brown } else { 45850a96aa3bSJed Brown PetscSection secIn, secInRed; 45860a96aa3bSJed Brown Vec vecInRed, vecInLocal; 45870a96aa3bSJed Brown 45889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)base,"_base_migration_sf",(PetscObject*)&sfRed)); 458928b400f6SJacob Faibussowitsch PetscCheck(sfRed,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not the DM set with DMForestSetBaseDM()"); 45909566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmVecIn),&secInRed)); 45919566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF,&vecInRed)); 45929566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmVecIn,&secIn)); 45939566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmVecIn,&vecInLocal)); 45949566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmVecIn,vecIn,INSERT_VALUES,vecInLocal)); 45959566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmVecIn,vecIn,INSERT_VALUES,vecInLocal)); 45969566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dmVecIn,sfRed,secIn,vecInLocal,secInRed,vecInRed)); 45979566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmVecIn,&vecInLocal)); 45989566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&secInRed)); 45990a96aa3bSJed Brown vecIn = vecInRed; 46000a96aa3bSJed Brown } 46010a96aa3bSJed Brown 46020a96aa3bSJed Brown /* we first search through the AdaptivityForest hierarchy 46030a96aa3bSJed Brown once we found the first disconnected forest, we upsweep the DM hierarchy */ 46040a96aa3bSJed Brown hiforest = PETSC_TRUE; 46050a96aa3bSJed Brown 46060a96aa3bSJed Brown /* upsweep to the coarsest DM */ 46070a96aa3bSJed Brown n_hi = 0; 46080a96aa3bSJed Brown coarseDM = dm; 46090a96aa3bSJed Brown do { 46100a96aa3bSJed Brown PetscBool isforest; 46110a96aa3bSJed Brown 46120a96aa3bSJed Brown dmIn = coarseDM; 46130a96aa3bSJed Brown /* need to call DMSetUp to have the hierarchy recursively setup */ 46149566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmIn)); 46159566063dSJacob Faibussowitsch PetscCall(DMIsForest(dmIn,&isforest)); 461628b400f6SJacob Faibussowitsch PetscCheck(isforest,PetscObjectComm((PetscObject)dmIn),PETSC_ERR_SUP,"Cannot currently transfer through a mixed hierarchy! Found DM type %s",((PetscObject)dmIn)->type_name); 46170a96aa3bSJed Brown coarseDM = NULL; 46180a96aa3bSJed Brown if (hiforest) { 46199566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmIn,&coarseDM)); 46200a96aa3bSJed Brown } 46210a96aa3bSJed Brown if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */ 46220a96aa3bSJed Brown hiforest = PETSC_FALSE; 46239566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmIn,&coarseDM)); 46240a96aa3bSJed Brown } 46250a96aa3bSJed Brown n_hi++; 46260a96aa3bSJed Brown } while (coarseDM); 46270a96aa3bSJed Brown 46289566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(n_hi,&hierarchy,n_hi,&hierarchy_forest)); 46290a96aa3bSJed Brown 46300a96aa3bSJed Brown i = 0; 46310a96aa3bSJed Brown hiforest = PETSC_TRUE; 46320a96aa3bSJed Brown coarseDM = dm; 46330a96aa3bSJed Brown do { 46340a96aa3bSJed Brown dmIn = coarseDM; 46350a96aa3bSJed Brown coarseDM = NULL; 46360a96aa3bSJed Brown if (hiforest) { 46379566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmIn,&coarseDM)); 46380a96aa3bSJed Brown } 46390a96aa3bSJed Brown if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */ 46400a96aa3bSJed Brown hiforest = PETSC_FALSE; 46419566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmIn,&coarseDM)); 46420a96aa3bSJed Brown } 46430a96aa3bSJed Brown i++; 46440a96aa3bSJed Brown hierarchy[n_hi - i] = dmIn; 46450a96aa3bSJed Brown } while (coarseDM); 46460a96aa3bSJed Brown 46470a96aa3bSJed Brown /* project base vector on the coarsest forest (minimum refinement = 0) */ 46489566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmIn,&plex)); 46490a96aa3bSJed Brown 46500a96aa3bSJed Brown /* Check this plex is compatible with the base */ 46510a96aa3bSJed Brown { 46520a96aa3bSJed Brown IS gnum[2]; 46530a96aa3bSJed Brown PetscInt ncells[2],gncells[2]; 46540a96aa3bSJed Brown 46559566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellNumbering(base,&gnum[0])); 46569566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellNumbering(plex,&gnum[1])); 46579566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(gnum[0],NULL,&ncells[0])); 46589566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(gnum[1],NULL,&ncells[1])); 46591c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(ncells,gncells,2,MPIU_INT,MPI_MAX,PetscObjectComm((PetscObject)dm))); 466063a3b9bcSJacob Faibussowitsch PetscCheck(gncells[0] == gncells[1],PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Invalid number of base cells! Expected %" PetscInt_FMT ", found %" PetscInt_FMT,gncells[0]+1,gncells[1]+1); 46610a96aa3bSJed Brown } 46620a96aa3bSJed Brown 46639566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmIn,"_forest_base_subpoint_map",&subpointMap)); 466428b400f6SJacob Faibussowitsch PetscCheck(subpointMap,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing _forest_base_subpoint_map label"); 46650a96aa3bSJed Brown 46669566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxProjectionHeight(base,&mh)); 46679566063dSJacob Faibussowitsch PetscCall(DMPlexSetMaxProjectionHeight(plex,mh)); 46680a96aa3bSJed Brown 46699566063dSJacob Faibussowitsch PetscCall(DMClone(base,&basec)); 46709566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dmVecIn,basec)); 46710a96aa3bSJed Brown if (sfRed) { 46729566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)vecIn)); 46730a96aa3bSJed Brown vecInLocal = vecIn; 46740a96aa3bSJed Brown } else { 46759566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(basec,&vecInLocal)); 46769566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(basec,vecIn,INSERT_VALUES,vecInLocal)); 46779566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(basec,vecIn,INSERT_VALUES,vecInLocal)); 46780a96aa3bSJed Brown } 46790a96aa3bSJed Brown 46809566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmIn,&vecOutLocal)); 46810a96aa3bSJed Brown { /* get degrees of freedom ordered onto dmIn */ 46820a96aa3bSJed Brown PetscSF basetocoarse; 46830a96aa3bSJed Brown PetscInt bStart, bEnd, nroots; 46840a96aa3bSJed Brown PetscInt iStart, iEnd, nleaves, leaf; 46850a96aa3bSJed Brown PetscMPIInt rank; 46860a96aa3bSJed Brown PetscSFNode *remotes; 46870a96aa3bSJed Brown PetscSection secIn, secOut; 46880a96aa3bSJed Brown PetscInt *remoteOffsets; 46890a96aa3bSJed Brown PetscSF transferSF; 46900a96aa3bSJed Brown const PetscScalar *inArray; 46910a96aa3bSJed Brown PetscScalar *outArray; 46920a96aa3bSJed Brown 46939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)basec), &rank)); 46949566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(basec, &bStart, &bEnd)); 46950a96aa3bSJed Brown nroots = PetscMax(bEnd - bStart, 0); 46969566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &iStart, &iEnd)); 46970a96aa3bSJed Brown nleaves = PetscMax(iEnd - iStart, 0); 46980a96aa3bSJed Brown 46999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &remotes)); 47000a96aa3bSJed Brown for (leaf = iStart; leaf < iEnd; leaf++) { 47010a96aa3bSJed Brown PetscInt index; 47020a96aa3bSJed Brown 47030a96aa3bSJed Brown remotes[leaf - iStart].rank = rank; 47049566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, leaf, &index)); 47050a96aa3bSJed Brown remotes[leaf - iStart].index = index; 47060a96aa3bSJed Brown } 47070a96aa3bSJed Brown 47089566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)basec), &basetocoarse)); 47099566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(basetocoarse, nroots, nleaves, NULL, PETSC_OWN_POINTER, remotes, PETSC_OWN_POINTER)); 47109566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(basetocoarse)); 47119566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(basec,&secIn)); 47129566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmIn),&secOut)); 47139566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(basetocoarse, secIn, &remoteOffsets, secOut)); 47149566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(basetocoarse, secIn, remoteOffsets, secOut, &transferSF)); 47159566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 47169566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vecOutLocal, &outArray)); 47179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vecInLocal, &inArray)); 47189566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(transferSF, MPIU_SCALAR, inArray, outArray,MPI_REPLACE)); 47199566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(transferSF, MPIU_SCALAR, inArray, outArray,MPI_REPLACE)); 47209566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vecInLocal, &inArray)); 47219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vecOutLocal, &outArray)); 47229566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&transferSF)); 47239566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&secOut)); 47249566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&basetocoarse)); 47250a96aa3bSJed Brown } 47269566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vecInLocal)); 47279566063dSJacob Faibussowitsch PetscCall(DMDestroy(&basec)); 47289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vecIn)); 47290a96aa3bSJed Brown 47300a96aa3bSJed Brown /* output */ 47310a96aa3bSJed Brown if (n_hi > 1) { /* downsweep the stored hierarchy */ 47320a96aa3bSJed Brown Vec vecOut1, vecOut2; 47330a96aa3bSJed Brown DM fineDM; 47340a96aa3bSJed Brown 47359566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmIn,&vecOut1)); 47369566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobal(dmIn,vecOutLocal,INSERT_VALUES,vecOut1)); 47379566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmIn,&vecOutLocal)); 47380a96aa3bSJed Brown for (i = 1; i < n_hi-1; i++) { 47390a96aa3bSJed Brown fineDM = hierarchy[i]; 47409566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(fineDM,&vecOut2)); 47419566063dSJacob Faibussowitsch PetscCall(DMForestTransferVec(dmIn,vecOut1,fineDM,vecOut2,PETSC_TRUE,0.0)); 47429566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmIn,&vecOut1)); 47430a96aa3bSJed Brown vecOut1 = vecOut2; 47440a96aa3bSJed Brown dmIn = fineDM; 47450a96aa3bSJed Brown } 47469566063dSJacob Faibussowitsch PetscCall(DMForestTransferVec(dmIn,vecOut1,dm,vecOut,PETSC_TRUE,0.0)); 47479566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmIn,&vecOut1)); 47480a96aa3bSJed Brown } else { 47499566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobal(dmIn,vecOutLocal,INSERT_VALUES,vecOut)); 47509566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmIn,&vecOutLocal)); 47510a96aa3bSJed Brown } 47529566063dSJacob Faibussowitsch PetscCall(PetscFree2(hierarchy,hierarchy_forest)); 47530a96aa3bSJed Brown PetscFunctionReturn(0); 47540a96aa3bSJed Brown } 47550a96aa3bSJed Brown 47560a96aa3bSJed Brown #define DMForestTransferVec_pforest _append_pforest(DMForestTransferVec) 47570a96aa3bSJed Brown static PetscErrorCode DMForestTransferVec_pforest(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut, PetscBool useBCs, PetscReal time) 47580a96aa3bSJed Brown { 47590a96aa3bSJed Brown DM adaptIn, adaptOut, plexIn, plexOut; 47600a96aa3bSJed Brown DM_Forest *forestIn, *forestOut, *forestAdaptIn, *forestAdaptOut; 47610a96aa3bSJed Brown PetscInt dofPerDim[] = {1, 1, 1, 1}; 47620a96aa3bSJed Brown PetscSF inSF = NULL, outSF = NULL; 47630a96aa3bSJed Brown PetscInt *inCids = NULL, *outCids = NULL; 47640a96aa3bSJed Brown DMAdaptFlag purposeIn, purposeOut; 47650a96aa3bSJed Brown 47660a96aa3bSJed Brown PetscFunctionBegin; 47670a96aa3bSJed Brown forestOut = (DM_Forest *) dmOut->data; 47680a96aa3bSJed Brown forestIn = (DM_Forest *) dmIn->data; 47690a96aa3bSJed Brown 47709566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmOut,&adaptOut)); 47719566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmOut,&purposeOut)); 47720a96aa3bSJed Brown forestAdaptOut = adaptOut ? (DM_Forest *) adaptOut->data : NULL; 47730a96aa3bSJed Brown 47749566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmIn,&adaptIn)); 47759566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmIn,&purposeIn)); 47760a96aa3bSJed Brown forestAdaptIn = adaptIn ? (DM_Forest *) adaptIn->data : NULL; 47770a96aa3bSJed Brown 47780a96aa3bSJed Brown if (forestAdaptOut == forestIn) { 47790a96aa3bSJed Brown switch (purposeOut) { 47800a96aa3bSJed Brown case DM_ADAPT_REFINE: 47819566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn,dmOut,dofPerDim,&inSF,PETSC_TRUE,&inCids)); 47829566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47830a96aa3bSJed Brown break; 47840a96aa3bSJed Brown case DM_ADAPT_COARSEN: 47850a96aa3bSJed Brown case DM_ADAPT_COARSEN_LAST: 47869566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut,dmIn,dofPerDim,&outSF,PETSC_TRUE,&outCids)); 47879566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47880a96aa3bSJed Brown break; 47890a96aa3bSJed Brown default: 47909566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn,dmOut,dofPerDim,&inSF,PETSC_TRUE,&inCids)); 47919566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut,dmIn,dofPerDim,&outSF,PETSC_FALSE,&outCids)); 47929566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47939566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47940a96aa3bSJed Brown } 47950a96aa3bSJed Brown } else if (forestAdaptIn == forestOut) { 47960a96aa3bSJed Brown switch (purposeIn) { 47970a96aa3bSJed Brown case DM_ADAPT_REFINE: 47989566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut,dmIn,dofPerDim,&outSF,PETSC_TRUE,&inCids)); 47999566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 48000a96aa3bSJed Brown break; 48010a96aa3bSJed Brown case DM_ADAPT_COARSEN: 48020a96aa3bSJed Brown case DM_ADAPT_COARSEN_LAST: 48039566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn,dmOut,dofPerDim,&inSF,PETSC_TRUE,&inCids)); 48049566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 48050a96aa3bSJed Brown break; 48060a96aa3bSJed Brown default: 48079566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn,dmOut,dofPerDim,&inSF,PETSC_TRUE,&inCids)); 48089566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut,dmIn,dofPerDim,&outSF,PETSC_FALSE,&outCids)); 48099566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 48109566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 48110a96aa3bSJed Brown } 48120a96aa3bSJed Brown } else SETERRQ(PetscObjectComm((PetscObject)dmIn),PETSC_ERR_SUP,"Only support transfer from pre-adaptivity to post-adaptivity right now"); 48139566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmIn,&plexIn)); 48149566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmOut,&plexOut)); 48150a96aa3bSJed Brown 48169566063dSJacob Faibussowitsch PetscCall(DMPlexTransferVecTree(plexIn,vecIn,plexOut,vecOut,inSF,outSF,inCids,outCids,useBCs,time)); 48179566063dSJacob Faibussowitsch PetscCall(PetscFree(inCids)); 48189566063dSJacob Faibussowitsch PetscCall(PetscFree(outCids)); 48199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&inSF)); 48209566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&outSF)); 48219566063dSJacob Faibussowitsch PetscCall(PetscFree(inCids)); 48229566063dSJacob Faibussowitsch PetscCall(PetscFree(outCids)); 48230a96aa3bSJed Brown PetscFunctionReturn(0); 48240a96aa3bSJed Brown } 48250a96aa3bSJed Brown 48260a96aa3bSJed Brown #define DMCreateCoordinateDM_pforest _append_pforest(DMCreateCoordinateDM) 48270a96aa3bSJed Brown static PetscErrorCode DMCreateCoordinateDM_pforest(DM dm,DM *cdm) 48280a96aa3bSJed Brown { 48290a96aa3bSJed Brown DM plex; 48300a96aa3bSJed Brown 48310a96aa3bSJed Brown PetscFunctionBegin; 48320a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 48339566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 48349566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(plex,cdm)); 48359566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*cdm)); 48360a96aa3bSJed Brown PetscFunctionReturn(0); 48370a96aa3bSJed Brown } 48380a96aa3bSJed Brown 48390a96aa3bSJed Brown #define VecViewLocal_pforest _append_pforest(VecViewLocal) 48400a96aa3bSJed Brown static PetscErrorCode VecViewLocal_pforest(Vec vec,PetscViewer viewer) 48410a96aa3bSJed Brown { 48420a96aa3bSJed Brown DM dm, plex; 48430a96aa3bSJed Brown 48440a96aa3bSJed Brown PetscFunctionBegin; 48459566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec,&dm)); 48469566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 48479566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,plex)); 48489566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local(vec,viewer)); 48499566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,dm)); 48500a96aa3bSJed Brown PetscFunctionReturn(0); 48510a96aa3bSJed Brown } 48520a96aa3bSJed Brown 48530a96aa3bSJed Brown #define VecView_pforest _append_pforest(VecView) 48540a96aa3bSJed Brown static PetscErrorCode VecView_pforest(Vec vec,PetscViewer viewer) 48550a96aa3bSJed Brown { 48560a96aa3bSJed Brown DM dm, plex; 48570a96aa3bSJed Brown 48580a96aa3bSJed Brown PetscFunctionBegin; 48599566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec,&dm)); 48609566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 48619566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,plex)); 48629566063dSJacob Faibussowitsch PetscCall(VecView_Plex(vec,viewer)); 48639566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,dm)); 48640a96aa3bSJed Brown PetscFunctionReturn(0); 48650a96aa3bSJed Brown } 48660a96aa3bSJed Brown 48670a96aa3bSJed Brown #define VecView_pforest_Native _infix_pforest(VecView,_Native) 48680a96aa3bSJed Brown static PetscErrorCode VecView_pforest_Native(Vec vec,PetscViewer viewer) 48690a96aa3bSJed Brown { 48700a96aa3bSJed Brown DM dm, plex; 48710a96aa3bSJed Brown 48720a96aa3bSJed Brown PetscFunctionBegin; 48739566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec,&dm)); 48749566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 48759566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,plex)); 48769566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Native(vec,viewer)); 48779566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,dm)); 48780a96aa3bSJed Brown PetscFunctionReturn(0); 48790a96aa3bSJed Brown } 48800a96aa3bSJed Brown 48810a96aa3bSJed Brown #define VecLoad_pforest _append_pforest(VecLoad) 48820a96aa3bSJed Brown static PetscErrorCode VecLoad_pforest(Vec vec,PetscViewer viewer) 48830a96aa3bSJed Brown { 48840a96aa3bSJed Brown DM dm, plex; 48850a96aa3bSJed Brown 48860a96aa3bSJed Brown PetscFunctionBegin; 48879566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec,&dm)); 48889566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 48899566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,plex)); 48909566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex(vec,viewer)); 48919566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,dm)); 48920a96aa3bSJed Brown PetscFunctionReturn(0); 48930a96aa3bSJed Brown } 48940a96aa3bSJed Brown 48950a96aa3bSJed Brown #define VecLoad_pforest_Native _infix_pforest(VecLoad,_Native) 48960a96aa3bSJed Brown static PetscErrorCode VecLoad_pforest_Native(Vec vec,PetscViewer viewer) 48970a96aa3bSJed Brown { 48980a96aa3bSJed Brown DM dm, plex; 48990a96aa3bSJed Brown 49000a96aa3bSJed Brown PetscFunctionBegin; 49019566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec,&dm)); 49029566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 49039566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,plex)); 49049566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex_Native(vec,viewer)); 49059566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec,dm)); 49060a96aa3bSJed Brown PetscFunctionReturn(0); 49070a96aa3bSJed Brown } 49080a96aa3bSJed Brown 49090a96aa3bSJed Brown #define DMCreateGlobalVector_pforest _append_pforest(DMCreateGlobalVector) 49100a96aa3bSJed Brown static PetscErrorCode DMCreateGlobalVector_pforest(DM dm,Vec *vec) 49110a96aa3bSJed Brown { 49120a96aa3bSJed Brown PetscFunctionBegin; 49139566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector_Section_Private(dm,vec)); 49149566063dSJacob Faibussowitsch /* PetscCall(VecSetOperation(*vec, VECOP_DUPLICATE, (void(*)(void)) VecDuplicate_MPI_DM)); */ 49159566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_VIEW, (void (*)(void))VecView_pforest)); 49169566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_VIEWNATIVE, (void (*)(void))VecView_pforest_Native)); 49179566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_LOAD, (void (*)(void))VecLoad_pforest)); 49189566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_LOADNATIVE, (void (*)(void))VecLoad_pforest_Native)); 49190a96aa3bSJed Brown PetscFunctionReturn(0); 49200a96aa3bSJed Brown } 49210a96aa3bSJed Brown 49220a96aa3bSJed Brown #define DMCreateLocalVector_pforest _append_pforest(DMCreateLocalVector) 49230a96aa3bSJed Brown static PetscErrorCode DMCreateLocalVector_pforest(DM dm,Vec *vec) 49240a96aa3bSJed Brown { 49250a96aa3bSJed Brown PetscFunctionBegin; 49269566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector_Section_Private(dm,vec)); 49279566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_VIEW, (void (*)(void))VecViewLocal_pforest)); 49280a96aa3bSJed Brown PetscFunctionReturn(0); 49290a96aa3bSJed Brown } 49300a96aa3bSJed Brown 49310a96aa3bSJed Brown #define DMCreateMatrix_pforest _append_pforest(DMCreateMatrix) 49320a96aa3bSJed Brown static PetscErrorCode DMCreateMatrix_pforest(DM dm,Mat *mat) 49330a96aa3bSJed Brown { 49340a96aa3bSJed Brown DM plex; 49350a96aa3bSJed Brown 49360a96aa3bSJed Brown PetscFunctionBegin; 49370a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 49389566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 49390a96aa3bSJed Brown if (plex->prealloc_only != dm->prealloc_only) plex->prealloc_only = dm->prealloc_only; /* maybe this should go into forest->plex */ 49409566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(plex,mat)); 49419566063dSJacob Faibussowitsch PetscCall(MatSetDM(*mat,dm)); 49420a96aa3bSJed Brown PetscFunctionReturn(0); 49430a96aa3bSJed Brown } 49440a96aa3bSJed Brown 49450a96aa3bSJed Brown #define DMProjectFunctionLocal_pforest _append_pforest(DMProjectFunctionLocal) 49460a96aa3bSJed Brown static PetscErrorCode DMProjectFunctionLocal_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs) (PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void*), void **ctxs, InsertMode mode, Vec localX) 49470a96aa3bSJed Brown { 49480a96aa3bSJed Brown DM plex; 49490a96aa3bSJed Brown 49500a96aa3bSJed Brown PetscFunctionBegin; 49510a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 49529566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 49539566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(plex,time,funcs,ctxs,mode,localX)); 49540a96aa3bSJed Brown PetscFunctionReturn(0); 49550a96aa3bSJed Brown } 49560a96aa3bSJed Brown 49570a96aa3bSJed Brown #define DMProjectFunctionLabelLocal_pforest _append_pforest(DMProjectFunctionLabelLocal) 49580a96aa3bSJed Brown static PetscErrorCode DMProjectFunctionLabelLocal_pforest(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Ncc, const PetscInt comps[], PetscErrorCode (**funcs) (PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void*), void **ctxs, InsertMode mode, Vec localX) 49590a96aa3bSJed Brown { 49600a96aa3bSJed Brown DM plex; 49610a96aa3bSJed Brown 49620a96aa3bSJed Brown PetscFunctionBegin; 49630a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 49649566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 49659566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(plex,time,label,numIds,ids,Ncc,comps,funcs,ctxs,mode,localX)); 49660a96aa3bSJed Brown PetscFunctionReturn(0); 49670a96aa3bSJed Brown } 49680a96aa3bSJed Brown 49690a96aa3bSJed Brown #define DMProjectFieldLocal_pforest _append_pforest(DMProjectFieldLocal) 49700a96aa3bSJed Brown PetscErrorCode DMProjectFieldLocal_pforest(DM dm, PetscReal time, Vec localU,void (**funcs) (PetscInt, PetscInt, PetscInt, 49710a96aa3bSJed Brown const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 49720a96aa3bSJed Brown const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 49730a96aa3bSJed Brown PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]),InsertMode mode, Vec localX) 49740a96aa3bSJed Brown { 49750a96aa3bSJed Brown DM plex; 49760a96aa3bSJed Brown 49770a96aa3bSJed Brown PetscFunctionBegin; 49780a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 49799566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 49809566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLocal(plex,time,localU,funcs,mode,localX)); 49810a96aa3bSJed Brown PetscFunctionReturn(0); 49820a96aa3bSJed Brown } 49830a96aa3bSJed Brown 49840a96aa3bSJed Brown #define DMComputeL2Diff_pforest _append_pforest(DMComputeL2Diff) 49850a96aa3bSJed Brown PetscErrorCode DMComputeL2Diff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs) (PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void*), void **ctxs, Vec X, PetscReal *diff) 49860a96aa3bSJed Brown { 49870a96aa3bSJed Brown DM plex; 49880a96aa3bSJed Brown 49890a96aa3bSJed Brown PetscFunctionBegin; 49900a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 49919566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 49929566063dSJacob Faibussowitsch PetscCall(DMComputeL2Diff(plex,time,funcs,ctxs,X,diff)); 49930a96aa3bSJed Brown PetscFunctionReturn(0); 49940a96aa3bSJed Brown } 49950a96aa3bSJed Brown 49960a96aa3bSJed Brown #define DMComputeL2FieldDiff_pforest _append_pforest(DMComputeL2FieldDiff) 49970a96aa3bSJed Brown PetscErrorCode DMComputeL2FieldDiff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs) (PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void*), void **ctxs, Vec X, PetscReal diff[]) 49980a96aa3bSJed Brown { 49990a96aa3bSJed Brown DM plex; 50000a96aa3bSJed Brown 50010a96aa3bSJed Brown PetscFunctionBegin; 50020a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 50039566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 50049566063dSJacob Faibussowitsch PetscCall(DMComputeL2FieldDiff(plex,time,funcs,ctxs,X,diff)); 50050a96aa3bSJed Brown PetscFunctionReturn(0); 50060a96aa3bSJed Brown } 50070a96aa3bSJed Brown 50080a96aa3bSJed Brown #define DMCreatelocalsection_pforest _append_pforest(DMCreatelocalsection) 50090a96aa3bSJed Brown static PetscErrorCode DMCreatelocalsection_pforest(DM dm) 50100a96aa3bSJed Brown { 50110a96aa3bSJed Brown DM plex; 50120a96aa3bSJed Brown PetscSection section; 50130a96aa3bSJed Brown 50140a96aa3bSJed Brown PetscFunctionBegin; 50150a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 50169566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 50179566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex,§ion)); 50189566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm,section)); 50190a96aa3bSJed Brown PetscFunctionReturn(0); 50200a96aa3bSJed Brown } 50210a96aa3bSJed Brown 50220a96aa3bSJed Brown #define DMCreateDefaultConstraints_pforest _append_pforest(DMCreateDefaultConstraints) 50230a96aa3bSJed Brown static PetscErrorCode DMCreateDefaultConstraints_pforest(DM dm) 50240a96aa3bSJed Brown { 50250a96aa3bSJed Brown DM plex; 50260a96aa3bSJed Brown Mat mat; 502779769bd5SJed Brown Vec bias; 50280a96aa3bSJed Brown PetscSection section; 50290a96aa3bSJed Brown 50300a96aa3bSJed Brown PetscFunctionBegin; 50310a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 50329566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 50339566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(plex,§ion,&mat,&bias)); 50349566063dSJacob Faibussowitsch PetscCall(DMSetDefaultConstraints(dm,section,mat,bias)); 50350a96aa3bSJed Brown PetscFunctionReturn(0); 50360a96aa3bSJed Brown } 50370a96aa3bSJed Brown 50380a96aa3bSJed Brown #define DMGetDimPoints_pforest _append_pforest(DMGetDimPoints) 50390a96aa3bSJed Brown static PetscErrorCode DMGetDimPoints_pforest(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 50400a96aa3bSJed Brown { 50410a96aa3bSJed Brown DM plex; 50420a96aa3bSJed Brown 50430a96aa3bSJed Brown PetscFunctionBegin; 50440a96aa3bSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 50459566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 50469566063dSJacob Faibussowitsch PetscCall(DMGetDimPoints(plex,dim,cStart,cEnd)); 50470a96aa3bSJed Brown PetscFunctionReturn(0); 50480a96aa3bSJed Brown } 50490a96aa3bSJed Brown 50500a96aa3bSJed Brown /* Need to forward declare */ 50510a96aa3bSJed Brown #define DMInitialize_pforest _append_pforest(DMInitialize) 50520a96aa3bSJed Brown static PetscErrorCode DMInitialize_pforest(DM dm); 50530a96aa3bSJed Brown 50540a96aa3bSJed Brown #define DMClone_pforest _append_pforest(DMClone) 50550a96aa3bSJed Brown static PetscErrorCode DMClone_pforest(DM dm, DM *newdm) 50560a96aa3bSJed Brown { 50570a96aa3bSJed Brown PetscFunctionBegin; 50589566063dSJacob Faibussowitsch PetscCall(DMClone_Forest(dm,newdm)); 50599566063dSJacob Faibussowitsch PetscCall(DMInitialize_pforest(*newdm)); 50600a96aa3bSJed Brown PetscFunctionReturn(0); 50610a96aa3bSJed Brown } 50620a96aa3bSJed Brown 50630a96aa3bSJed Brown #define DMForestCreateCellChart_pforest _append_pforest(DMForestCreateCellChart) 50640a96aa3bSJed Brown static PetscErrorCode DMForestCreateCellChart_pforest(DM dm, PetscInt *cStart, PetscInt *cEnd) 50650a96aa3bSJed Brown { 50660a96aa3bSJed Brown DM_Forest *forest; 50670a96aa3bSJed Brown DM_Forest_pforest *pforest; 50680a96aa3bSJed Brown PetscInt overlap; 50690a96aa3bSJed Brown 50700a96aa3bSJed Brown PetscFunctionBegin; 50719566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 50720a96aa3bSJed Brown forest = (DM_Forest*) dm->data; 50730a96aa3bSJed Brown pforest = (DM_Forest_pforest*) forest->data; 50740a96aa3bSJed Brown *cStart = 0; 50759566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm,&overlap)); 50760a96aa3bSJed Brown if (overlap && pforest->ghost) { 50770a96aa3bSJed Brown *cEnd = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[pforest->forest->mpisize]; 50780a96aa3bSJed Brown } else { 50790a96aa3bSJed Brown *cEnd = pforest->forest->local_num_quadrants; 50800a96aa3bSJed Brown } 50810a96aa3bSJed Brown PetscFunctionReturn(0); 50820a96aa3bSJed Brown } 50830a96aa3bSJed Brown 50840a96aa3bSJed Brown #define DMForestCreateCellSF_pforest _append_pforest(DMForestCreateCellSF) 50850a96aa3bSJed Brown static PetscErrorCode DMForestCreateCellSF_pforest(DM dm, PetscSF *cellSF) 50860a96aa3bSJed Brown { 50870a96aa3bSJed Brown DM_Forest *forest; 50880a96aa3bSJed Brown DM_Forest_pforest *pforest; 50890a96aa3bSJed Brown PetscMPIInt rank; 50900a96aa3bSJed Brown PetscInt overlap; 50910a96aa3bSJed Brown PetscInt cStart, cEnd, cLocalStart, cLocalEnd; 50920a96aa3bSJed Brown PetscInt nRoots, nLeaves, *mine = NULL; 50930a96aa3bSJed Brown PetscSFNode *remote = NULL; 50940a96aa3bSJed Brown PetscSF sf; 50950a96aa3bSJed Brown 50960a96aa3bSJed Brown PetscFunctionBegin; 50979566063dSJacob Faibussowitsch PetscCall(DMForestGetCellChart(dm,&cStart,&cEnd)); 50980a96aa3bSJed Brown forest = (DM_Forest*) dm->data; 50990a96aa3bSJed Brown pforest = (DM_Forest_pforest*) forest->data; 51000a96aa3bSJed Brown nRoots = cEnd - cStart; 51010a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 51020a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 51030a96aa3bSJed Brown nLeaves = 0; 51049566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm,&overlap)); 51059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank)); 51060a96aa3bSJed Brown if (overlap && pforest->ghost) { 51070a96aa3bSJed Brown PetscSFNode *mirror; 51080a96aa3bSJed Brown p4est_quadrant_t *mirror_array; 51090a96aa3bSJed Brown PetscInt nMirror, nGhostPre, nSelf, q; 51100a96aa3bSJed Brown void **mirrorPtrs; 51110a96aa3bSJed Brown 51120a96aa3bSJed Brown nMirror = (PetscInt) pforest->ghost->mirrors.elem_count; 51130a96aa3bSJed Brown nSelf = cLocalEnd - cLocalStart; 51140a96aa3bSJed Brown nLeaves = nRoots - nSelf; 51150a96aa3bSJed Brown nGhostPre = (PetscInt) pforest->ghost->proc_offsets[rank]; 51169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves,&mine)); 51179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves,&remote)); 51189566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nMirror,&mirror,nMirror,&mirrorPtrs)); 51190a96aa3bSJed Brown mirror_array = (p4est_quadrant_t*) pforest->ghost->mirrors.array; 51200a96aa3bSJed Brown for (q = 0; q < nMirror; q++) { 51210a96aa3bSJed Brown p4est_quadrant_t *mir = &(mirror_array[q]); 51220a96aa3bSJed Brown 51230a96aa3bSJed Brown mirror[q].rank = rank; 51240a96aa3bSJed Brown mirror[q].index = (PetscInt) mir->p.piggy3.local_num + cLocalStart; 51250a96aa3bSJed Brown mirrorPtrs[q] = (void*) &(mirror[q]); 51260a96aa3bSJed Brown } 51270a96aa3bSJed Brown PetscStackCallP4est(p4est_ghost_exchange_custom,(pforest->forest,pforest->ghost,sizeof(PetscSFNode),mirrorPtrs,remote)); 51289566063dSJacob Faibussowitsch PetscCall(PetscFree2(mirror,mirrorPtrs)); 51290a96aa3bSJed Brown for (q = 0; q < nGhostPre; q++) mine[q] = q; 51300a96aa3bSJed Brown for (; q < nLeaves; q++) mine[q] = (q - nGhostPre) + cLocalEnd; 51310a96aa3bSJed Brown } 51329566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm),&sf)); 51339566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf,nRoots,nLeaves,mine,PETSC_OWN_POINTER,remote,PETSC_OWN_POINTER)); 51340a96aa3bSJed Brown *cellSF = sf; 51350a96aa3bSJed Brown PetscFunctionReturn(0); 51360a96aa3bSJed Brown } 51370a96aa3bSJed Brown 51380a96aa3bSJed Brown static PetscErrorCode DMCreateNeumannOverlap_pforest(DM dm, IS* ovl, Mat *J, PetscErrorCode (**setup)(Mat, PetscReal, Vec, Vec, PetscReal, IS, void*), void **setup_ctx) 51390a96aa3bSJed Brown { 51400a96aa3bSJed Brown DM plex; 51410a96aa3bSJed Brown 51420a96aa3bSJed Brown PetscFunctionBegin; 51439566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm,&plex)); 51449566063dSJacob Faibussowitsch PetscCall(DMCreateNeumannOverlap_Plex(plex,ovl,J,setup,setup_ctx)); 51450a96aa3bSJed Brown if (!*setup) { 51469566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, "MatComputeNeumannOverlap_C", setup)); 51470a96aa3bSJed Brown if (*setup) { 51489566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*ovl, "_DM_Original_HPDDM", (PetscObject)dm)); 51490a96aa3bSJed Brown } 51500a96aa3bSJed Brown } 51510a96aa3bSJed Brown PetscFunctionReturn(0); 51520a96aa3bSJed Brown } 51530a96aa3bSJed Brown 51540a96aa3bSJed Brown static PetscErrorCode DMInitialize_pforest(DM dm) 51550a96aa3bSJed Brown { 51560a96aa3bSJed Brown PetscFunctionBegin; 51570a96aa3bSJed Brown dm->ops->setup = DMSetUp_pforest; 51580a96aa3bSJed Brown dm->ops->view = DMView_pforest; 51590a96aa3bSJed Brown dm->ops->clone = DMClone_pforest; 51600a96aa3bSJed Brown dm->ops->createinterpolation = DMCreateInterpolation_pforest; 51610a96aa3bSJed Brown dm->ops->createinjection = DMCreateInjection_pforest; 51620a96aa3bSJed Brown dm->ops->setfromoptions = DMSetFromOptions_pforest; 51630a96aa3bSJed Brown dm->ops->createcoordinatedm = DMCreateCoordinateDM_pforest; 51640a96aa3bSJed Brown dm->ops->createglobalvector = DMCreateGlobalVector_pforest; 51650a96aa3bSJed Brown dm->ops->createlocalvector = DMCreateLocalVector_pforest; 51660a96aa3bSJed Brown dm->ops->creatematrix = DMCreateMatrix_pforest; 51670a96aa3bSJed Brown dm->ops->projectfunctionlocal = DMProjectFunctionLocal_pforest; 51680a96aa3bSJed Brown dm->ops->projectfunctionlabellocal = DMProjectFunctionLabelLocal_pforest; 51690a96aa3bSJed Brown dm->ops->projectfieldlocal = DMProjectFieldLocal_pforest; 51700a96aa3bSJed Brown dm->ops->createlocalsection = DMCreatelocalsection_pforest; 51710a96aa3bSJed Brown dm->ops->createdefaultconstraints = DMCreateDefaultConstraints_pforest; 51720a96aa3bSJed Brown dm->ops->computel2diff = DMComputeL2Diff_pforest; 51730a96aa3bSJed Brown dm->ops->computel2fielddiff = DMComputeL2FieldDiff_pforest; 51740a96aa3bSJed Brown dm->ops->getdimpoints = DMGetDimPoints_pforest; 51750a96aa3bSJed Brown 51769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,PetscStringize(DMConvert_plex_pforest) "_C",DMConvert_plex_pforest)); 51779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,PetscStringize(DMConvert_pforest_plex) "_C",DMConvert_pforest_plex)); 51789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMCreateNeumannOverlap_C",DMCreateNeumannOverlap_pforest)); 51799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexGetOverlap_C",DMForestGetPartitionOverlap)); 51800a96aa3bSJed Brown PetscFunctionReturn(0); 51810a96aa3bSJed Brown } 51820a96aa3bSJed Brown 51830a96aa3bSJed Brown #define DMCreate_pforest _append_pforest(DMCreate) 51840a96aa3bSJed Brown PETSC_EXTERN PetscErrorCode DMCreate_pforest(DM dm) 51850a96aa3bSJed Brown { 51860a96aa3bSJed Brown DM_Forest *forest; 51870a96aa3bSJed Brown DM_Forest_pforest *pforest; 51880a96aa3bSJed Brown 51890a96aa3bSJed Brown PetscFunctionBegin; 51909566063dSJacob Faibussowitsch PetscCall(PetscP4estInitialize()); 51919566063dSJacob Faibussowitsch PetscCall(DMCreate_Forest(dm)); 51929566063dSJacob Faibussowitsch PetscCall(DMInitialize_pforest(dm)); 51939566063dSJacob Faibussowitsch PetscCall(DMSetDimension(dm,P4EST_DIM)); 51940a96aa3bSJed Brown 51950a96aa3bSJed Brown /* set forest defaults */ 51969566063dSJacob Faibussowitsch PetscCall(DMForestSetTopology(dm,"unit")); 51979566063dSJacob Faibussowitsch PetscCall(DMForestSetMinimumRefinement(dm,0)); 51989566063dSJacob Faibussowitsch PetscCall(DMForestSetInitialRefinement(dm,0)); 51999566063dSJacob Faibussowitsch PetscCall(DMForestSetMaximumRefinement(dm,P4EST_QMAXLEVEL)); 52009566063dSJacob Faibussowitsch PetscCall(DMForestSetGradeFactor(dm,2)); 52019566063dSJacob Faibussowitsch PetscCall(DMForestSetAdjacencyDimension(dm,0)); 52029566063dSJacob Faibussowitsch PetscCall(DMForestSetPartitionOverlap(dm,0)); 52030a96aa3bSJed Brown 52040a96aa3bSJed Brown /* create p4est data */ 52059566063dSJacob Faibussowitsch PetscCall(PetscNewLog(dm,&pforest)); 52060a96aa3bSJed Brown 52070a96aa3bSJed Brown forest = (DM_Forest*) dm->data; 52080a96aa3bSJed Brown forest->data = pforest; 52090a96aa3bSJed Brown forest->destroy = DMForestDestroy_pforest; 52100a96aa3bSJed Brown forest->ftemplate = DMForestTemplate_pforest; 52110a96aa3bSJed Brown forest->transfervec = DMForestTransferVec_pforest; 52120a96aa3bSJed Brown forest->transfervecfrombase = DMForestTransferVecFromBase_pforest; 52130a96aa3bSJed Brown forest->createcellchart = DMForestCreateCellChart_pforest; 52140a96aa3bSJed Brown forest->createcellsf = DMForestCreateCellSF_pforest; 52150a96aa3bSJed Brown forest->clearadaptivityforest = DMForestClearAdaptivityForest_pforest; 52160a96aa3bSJed Brown forest->getadaptivitysuccess = DMForestGetAdaptivitySuccess_pforest; 52170a96aa3bSJed Brown pforest->topo = NULL; 52180a96aa3bSJed Brown pforest->forest = NULL; 52190a96aa3bSJed Brown pforest->ghost = NULL; 52200a96aa3bSJed Brown pforest->lnodes = NULL; 52210a96aa3bSJed Brown pforest->partition_for_coarsening = PETSC_TRUE; 52220a96aa3bSJed Brown pforest->coarsen_hierarchy = PETSC_FALSE; 52230a96aa3bSJed Brown pforest->cLocalStart = -1; 52240a96aa3bSJed Brown pforest->cLocalEnd = -1; 52250a96aa3bSJed Brown pforest->labelsFinalized = PETSC_FALSE; 52260a96aa3bSJed Brown pforest->ghostName = NULL; 52270a96aa3bSJed Brown PetscFunctionReturn(0); 52280a96aa3bSJed Brown } 52290a96aa3bSJed Brown 52300a96aa3bSJed Brown #endif /* defined(PETSC_HAVE_P4EST) */ 5231