xref: /petsc/src/dm/impls/forest/p4est/pforest.h (revision 57168dbe2b4331ffbf7c9254e2e952baf9ea37a0)
10a96aa3bSJed Brown #include <petscds.h>
20a96aa3bSJed Brown #include <petsc/private/dmimpl.h>
30a96aa3bSJed Brown #include <petsc/private/dmforestimpl.h>
40a96aa3bSJed Brown #include <petsc/private/dmpleximpl.h>
50a96aa3bSJed Brown #include <petsc/private/dmlabelimpl.h>
60a96aa3bSJed Brown #include <petsc/private/viewerimpl.h>
70a96aa3bSJed Brown #include <../src/sys/classes/viewer/impls/vtk/vtkvimpl.h>
80a96aa3bSJed Brown #include "petsc_p4est_package.h"
90a96aa3bSJed Brown 
100a96aa3bSJed Brown #if defined(PETSC_HAVE_P4EST)
110a96aa3bSJed Brown 
120a96aa3bSJed Brown #if !defined(P4_TO_P8)
130a96aa3bSJed Brown #include <p4est.h>
140a96aa3bSJed Brown #include <p4est_extended.h>
150a96aa3bSJed Brown #include <p4est_geometry.h>
160a96aa3bSJed Brown #include <p4est_ghost.h>
170a96aa3bSJed Brown #include <p4est_lnodes.h>
180a96aa3bSJed Brown #include <p4est_vtk.h>
190a96aa3bSJed Brown #include <p4est_plex.h>
200a96aa3bSJed Brown #include <p4est_bits.h>
210a96aa3bSJed Brown #include <p4est_algorithms.h>
220a96aa3bSJed Brown #else
230a96aa3bSJed Brown #include <p8est.h>
240a96aa3bSJed Brown #include <p8est_extended.h>
250a96aa3bSJed Brown #include <p8est_geometry.h>
260a96aa3bSJed Brown #include <p8est_ghost.h>
270a96aa3bSJed Brown #include <p8est_lnodes.h>
280a96aa3bSJed Brown #include <p8est_vtk.h>
290a96aa3bSJed Brown #include <p8est_plex.h>
300a96aa3bSJed Brown #include <p8est_bits.h>
310a96aa3bSJed Brown #include <p8est_algorithms.h>
320a96aa3bSJed Brown #endif
330a96aa3bSJed Brown 
340a96aa3bSJed Brown typedef enum {PATTERN_HASH,PATTERN_FRACTAL,PATTERN_CORNER,PATTERN_CENTER,PATTERN_COUNT} DMRefinePattern;
350a96aa3bSJed Brown static const char *DMRefinePatternName[PATTERN_COUNT] = {"hash","fractal","corner","center"};
360a96aa3bSJed Brown 
370a96aa3bSJed Brown typedef struct _DMRefinePatternCtx
380a96aa3bSJed Brown {
390a96aa3bSJed Brown   PetscInt       corner;
400a96aa3bSJed Brown   PetscBool      fractal[P4EST_CHILDREN];
410a96aa3bSJed Brown   PetscReal      hashLikelihood;
420a96aa3bSJed Brown   PetscInt       maxLevel;
430a96aa3bSJed Brown   p4est_refine_t refine_fn;
440a96aa3bSJed Brown }
450a96aa3bSJed Brown DMRefinePatternCtx;
460a96aa3bSJed Brown 
470a96aa3bSJed Brown static int DMRefinePattern_Corner(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
480a96aa3bSJed Brown {
490a96aa3bSJed Brown   p4est_quadrant_t   root, rootcorner;
500a96aa3bSJed Brown   DMRefinePatternCtx *ctx;
510a96aa3bSJed Brown 
520a96aa3bSJed Brown   ctx = (DMRefinePatternCtx*) p4est->user_pointer;
530a96aa3bSJed Brown   if (quadrant->level >= ctx->maxLevel) return 0;
540a96aa3bSJed Brown 
550a96aa3bSJed Brown   root.x = root.y = 0;
560a96aa3bSJed Brown #if defined(P4_TO_P8)
570a96aa3bSJed Brown   root.z = 0;
580a96aa3bSJed Brown #endif
590a96aa3bSJed Brown   root.level = 0;
600a96aa3bSJed Brown   p4est_quadrant_corner_descendant(&root,&rootcorner,ctx->corner,quadrant->level);
610a96aa3bSJed Brown   if (p4est_quadrant_is_equal(quadrant,&rootcorner)) return 1;
620a96aa3bSJed Brown   return 0;
630a96aa3bSJed Brown }
640a96aa3bSJed Brown 
650a96aa3bSJed Brown static int DMRefinePattern_Center(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
660a96aa3bSJed Brown {
670a96aa3bSJed Brown   int                cid;
680a96aa3bSJed Brown   p4est_quadrant_t   ancestor, ancestorcorner;
690a96aa3bSJed Brown   DMRefinePatternCtx *ctx;
700a96aa3bSJed Brown 
710a96aa3bSJed Brown   ctx = (DMRefinePatternCtx*) p4est->user_pointer;
720a96aa3bSJed Brown   if (quadrant->level >= ctx->maxLevel) return 0;
730a96aa3bSJed Brown   if (quadrant->level <= 1) return 1;
740a96aa3bSJed Brown 
750a96aa3bSJed Brown   p4est_quadrant_ancestor(quadrant,1,&ancestor);
760a96aa3bSJed Brown   cid = p4est_quadrant_child_id(&ancestor);
770a96aa3bSJed Brown   p4est_quadrant_corner_descendant(&ancestor,&ancestorcorner,P4EST_CHILDREN - 1 - cid,quadrant->level);
780a96aa3bSJed Brown   if (p4est_quadrant_is_equal(quadrant,&ancestorcorner)) return 1;
790a96aa3bSJed Brown   return 0;
800a96aa3bSJed Brown }
810a96aa3bSJed Brown 
820a96aa3bSJed Brown static int DMRefinePattern_Fractal(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
830a96aa3bSJed Brown {
840a96aa3bSJed Brown   int                cid;
850a96aa3bSJed Brown   DMRefinePatternCtx *ctx;
860a96aa3bSJed Brown 
870a96aa3bSJed Brown   ctx = (DMRefinePatternCtx*) p4est->user_pointer;
880a96aa3bSJed Brown   if (quadrant->level >= ctx->maxLevel) return 0;
890a96aa3bSJed Brown   if (!quadrant->level) return 1;
900a96aa3bSJed Brown   cid = p4est_quadrant_child_id(quadrant);
910a96aa3bSJed Brown   if (ctx->fractal[cid ^ ((int) (quadrant->level % P4EST_CHILDREN))]) return 1;
920a96aa3bSJed Brown   return 0;
930a96aa3bSJed Brown }
940a96aa3bSJed Brown 
950a96aa3bSJed Brown /* simplified from MurmurHash3 by Austin Appleby */
960a96aa3bSJed Brown #define DMPROT32(x, y) ((x << y) | (x >> (32 - y)))
970a96aa3bSJed Brown static uint32_t DMPforestHash(const uint32_t *blocks, uint32_t nblocks)
980a96aa3bSJed Brown {
990a96aa3bSJed Brown   uint32_t c1   = 0xcc9e2d51;
1000a96aa3bSJed Brown   uint32_t c2   = 0x1b873593;
1010a96aa3bSJed Brown   uint32_t r1   = 15;
1020a96aa3bSJed Brown   uint32_t r2   = 13;
1030a96aa3bSJed Brown   uint32_t m    = 5;
1040a96aa3bSJed Brown   uint32_t n    = 0xe6546b64;
1050a96aa3bSJed Brown   uint32_t hash = 0;
1060a96aa3bSJed Brown   int      len  = nblocks * 4;
1070a96aa3bSJed Brown   uint32_t i;
1080a96aa3bSJed Brown 
1090a96aa3bSJed Brown   for (i = 0; i < nblocks; i++) {
1100a96aa3bSJed Brown     uint32_t k;
1110a96aa3bSJed Brown 
1120a96aa3bSJed Brown     k  = blocks[i];
1130a96aa3bSJed Brown     k *= c1;
1140a96aa3bSJed Brown     k  = DMPROT32(k, r1);
1150a96aa3bSJed Brown     k *= c2;
1160a96aa3bSJed Brown 
1170a96aa3bSJed Brown     hash ^= k;
1180a96aa3bSJed Brown     hash  = DMPROT32(hash, r2) * m + n;
1190a96aa3bSJed Brown   }
1200a96aa3bSJed Brown 
1210a96aa3bSJed Brown   hash ^= len;
1220a96aa3bSJed Brown   hash ^= (hash >> 16);
1230a96aa3bSJed Brown   hash *= 0x85ebca6b;
1240a96aa3bSJed Brown   hash ^= (hash >> 13);
1250a96aa3bSJed Brown   hash *= 0xc2b2ae35;
1260a96aa3bSJed Brown   hash ^= (hash >> 16);
1270a96aa3bSJed Brown 
1280a96aa3bSJed Brown   return hash;
1290a96aa3bSJed Brown }
1300a96aa3bSJed Brown 
1310a96aa3bSJed Brown #if defined(UINT32_MAX)
1320a96aa3bSJed Brown #define DMP4EST_HASH_MAX UINT32_MAX
1330a96aa3bSJed Brown #else
1340a96aa3bSJed Brown #define DMP4EST_HASH_MAX ((uint32_t) 0xffffffff)
1350a96aa3bSJed Brown #endif
1360a96aa3bSJed Brown 
1370a96aa3bSJed Brown static int DMRefinePattern_Hash(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
1380a96aa3bSJed Brown {
1390a96aa3bSJed Brown   uint32_t           data[5];
1400a96aa3bSJed Brown   uint32_t           result;
1410a96aa3bSJed Brown   DMRefinePatternCtx *ctx;
1420a96aa3bSJed Brown 
1430a96aa3bSJed Brown   ctx = (DMRefinePatternCtx*) p4est->user_pointer;
1440a96aa3bSJed Brown   if (quadrant->level >= ctx->maxLevel) return 0;
1450a96aa3bSJed Brown   data[0] = ((uint32_t) quadrant->level) << 24;
1460a96aa3bSJed Brown   data[1] = (uint32_t) which_tree;
1470a96aa3bSJed Brown   data[2] = (uint32_t) quadrant->x;
1480a96aa3bSJed Brown   data[3] = (uint32_t) quadrant->y;
1490a96aa3bSJed Brown #if defined(P4_TO_P8)
1500a96aa3bSJed Brown   data[4] = (uint32_t) quadrant->z;
1510a96aa3bSJed Brown #endif
1520a96aa3bSJed Brown 
1530a96aa3bSJed Brown   result = DMPforestHash(data,2+P4EST_DIM);
1540a96aa3bSJed Brown   if (((double) result / (double) DMP4EST_HASH_MAX) < ctx->hashLikelihood) return 1;
1550a96aa3bSJed Brown   return 0;
1560a96aa3bSJed Brown }
1570a96aa3bSJed Brown 
1580a96aa3bSJed Brown #define DMConvert_pforest_plex _infix_pforest(DMConvert,_plex)
1590a96aa3bSJed Brown static PetscErrorCode DMConvert_pforest_plex(DM,DMType,DM*);
1600a96aa3bSJed Brown 
1610a96aa3bSJed Brown #define DMFTopology_pforest _append_pforest(DMFTopology)
1620a96aa3bSJed Brown typedef struct {
1630a96aa3bSJed Brown   PetscInt             refct;
1640a96aa3bSJed Brown   p4est_connectivity_t *conn;
1650a96aa3bSJed Brown   p4est_geometry_t     *geom;
1660a96aa3bSJed Brown   PetscInt             *tree_face_to_uniq; /* p4est does not explicitly enumerate facets, but we must to keep track of labels */
1670a96aa3bSJed Brown } DMFTopology_pforest;
1680a96aa3bSJed Brown 
1690a96aa3bSJed Brown #define DM_Forest_pforest _append_pforest(DM_Forest)
1700a96aa3bSJed Brown typedef struct {
1710a96aa3bSJed Brown   DMFTopology_pforest *topo;
1720a96aa3bSJed Brown   p4est_t             *forest;
1730a96aa3bSJed Brown   p4est_ghost_t       *ghost;
1740a96aa3bSJed Brown   p4est_lnodes_t      *lnodes;
1750a96aa3bSJed Brown   PetscBool           partition_for_coarsening;
1760a96aa3bSJed Brown   PetscBool           coarsen_hierarchy;
1770a96aa3bSJed Brown   PetscBool           labelsFinalized;
1780a96aa3bSJed Brown   PetscBool           adaptivitySuccess;
1790a96aa3bSJed Brown   PetscInt            cLocalStart;
1800a96aa3bSJed Brown   PetscInt            cLocalEnd;
1810a96aa3bSJed Brown   DM                  plex;
1820a96aa3bSJed Brown   char                *ghostName;
1830a96aa3bSJed Brown   PetscSF             pointAdaptToSelfSF;
1840a96aa3bSJed Brown   PetscSF             pointSelfToAdaptSF;
1850a96aa3bSJed Brown   PetscInt            *pointAdaptToSelfCids;
1860a96aa3bSJed Brown   PetscInt            *pointSelfToAdaptCids;
1870a96aa3bSJed Brown } DM_Forest_pforest;
1880a96aa3bSJed Brown 
1890a96aa3bSJed Brown #define DM_Forest_geometry_pforest _append_pforest(DM_Forest_geometry)
1900a96aa3bSJed Brown typedef struct {
1910a96aa3bSJed Brown   DM base;
1920a96aa3bSJed Brown   PetscErrorCode   (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void*);
1930a96aa3bSJed Brown   void             *mapCtx;
1940a96aa3bSJed Brown   PetscInt         coordDim;
1950a96aa3bSJed Brown   p4est_geometry_t *inner;
1960a96aa3bSJed Brown }
1970a96aa3bSJed Brown DM_Forest_geometry_pforest;
1980a96aa3bSJed Brown 
1990a96aa3bSJed Brown #define GeometryMapping_pforest _append_pforest(GeometryMapping)
2000a96aa3bSJed Brown static void GeometryMapping_pforest(p4est_geometry_t *geom, p4est_topidx_t which_tree, const double abc[3], double xyz[3])
2010a96aa3bSJed Brown {
2020a96aa3bSJed Brown   DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest*)geom->user;
2030a96aa3bSJed Brown   PetscReal                  PetscABC[3]   = {0.};
2040a96aa3bSJed Brown   PetscReal                  PetscXYZ[3]   = {0.};
2050a96aa3bSJed Brown   PetscInt                   i, d = PetscMin(3,geom_pforest->coordDim);
2060a96aa3bSJed Brown   double                     ABC[3];
2070a96aa3bSJed Brown   PetscErrorCode             ierr;
2080a96aa3bSJed Brown 
2090a96aa3bSJed Brown   (geom_pforest->inner->X)(geom_pforest->inner,which_tree,abc,ABC);
2100a96aa3bSJed Brown 
2110a96aa3bSJed Brown   for (i = 0; i < d; i++) PetscABC[i] = ABC[i];
2120a96aa3bSJed Brown   ierr = (geom_pforest->map)(geom_pforest->base,(PetscInt) which_tree,geom_pforest->coordDim,PetscABC,PetscXYZ,geom_pforest->mapCtx);PETSC_P4EST_ASSERT(!ierr);
2130a96aa3bSJed Brown   for (i = 0; i < d; i++) xyz[i] = PetscXYZ[i];
2140a96aa3bSJed Brown }
2150a96aa3bSJed Brown 
2160a96aa3bSJed Brown #define GeometryDestroy_pforest _append_pforest(GeometryDestroy)
2170a96aa3bSJed Brown static void GeometryDestroy_pforest(p4est_geometry_t *geom)
2180a96aa3bSJed Brown {
2190a96aa3bSJed Brown   DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest*)geom->user;
2200a96aa3bSJed Brown   PetscErrorCode             ierr;
2210a96aa3bSJed Brown 
2220a96aa3bSJed Brown   p4est_geometry_destroy(geom_pforest->inner);
2230a96aa3bSJed Brown   ierr = PetscFree(geom->user);PETSC_P4EST_ASSERT(!ierr);
2240a96aa3bSJed Brown   ierr = PetscFree(geom);PETSC_P4EST_ASSERT(!ierr);
2250a96aa3bSJed Brown }
2260a96aa3bSJed Brown 
2270a96aa3bSJed Brown #define DMFTopologyDestroy_pforest _append_pforest(DMFTopologyDestroy)
2280a96aa3bSJed Brown static PetscErrorCode DMFTopologyDestroy_pforest(DMFTopology_pforest **topo)
2290a96aa3bSJed Brown {
2300a96aa3bSJed Brown   PetscFunctionBegin;
2310a96aa3bSJed Brown   if (!(*topo)) PetscFunctionReturn(0);
2320a96aa3bSJed Brown   if (--((*topo)->refct) > 0) {
2330a96aa3bSJed Brown     *topo = NULL;
2340a96aa3bSJed Brown     PetscFunctionReturn(0);
2350a96aa3bSJed Brown   }
236792fecdfSBarry Smith   if ((*topo)->geom) PetscCallP4est(p4est_geometry_destroy,((*topo)->geom));
237792fecdfSBarry Smith   PetscCallP4est(p4est_connectivity_destroy,((*topo)->conn));
2389566063dSJacob Faibussowitsch   PetscCall(PetscFree((*topo)->tree_face_to_uniq));
2399566063dSJacob Faibussowitsch   PetscCall(PetscFree(*topo));
2400a96aa3bSJed Brown   *topo = NULL;
2410a96aa3bSJed Brown   PetscFunctionReturn(0);
2420a96aa3bSJed Brown }
2430a96aa3bSJed Brown 
2440a96aa3bSJed Brown static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t*,PetscInt**);
2450a96aa3bSJed Brown 
2460a96aa3bSJed Brown #define DMFTopologyCreateBrick_pforest _append_pforest(DMFTopologyCreateBrick)
2470a96aa3bSJed Brown static PetscErrorCode DMFTopologyCreateBrick_pforest(DM dm,PetscInt N[], PetscInt P[], PetscReal B[],DMFTopology_pforest **topo, PetscBool useMorton)
2480a96aa3bSJed Brown {
2490a96aa3bSJed Brown   double         *vertices;
2500a96aa3bSJed Brown   PetscInt       i, numVerts;
2510a96aa3bSJed Brown 
2520a96aa3bSJed Brown   PetscFunctionBegin;
25328b400f6SJacob Faibussowitsch   PetscCheck(useMorton,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Lexicographic ordering not implemented yet");
2549566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(dm,topo));
2550a96aa3bSJed Brown 
2560a96aa3bSJed Brown   (*topo)->refct = 1;
2570a96aa3bSJed Brown #if !defined(P4_TO_P8)
258792fecdfSBarry Smith   PetscCallP4estReturn((*topo)->conn,p4est_connectivity_new_brick,((int) N[0], (int) N[1], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1));
2590a96aa3bSJed Brown #else
260792fecdfSBarry Smith   PetscCallP4estReturn((*topo)->conn,p8est_connectivity_new_brick,((int) N[0], (int) N[1], (int) N[2], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1, (P[2] == DM_BOUNDARY_NONE) ? 0 : 1));
2610a96aa3bSJed Brown #endif
2620a96aa3bSJed Brown   numVerts = (*topo)->conn->num_vertices;
2630a96aa3bSJed Brown   vertices = (*topo)->conn->vertices;
2640a96aa3bSJed Brown   for (i = 0; i < 3 * numVerts; i++) {
2650a96aa3bSJed Brown     PetscInt j = i % 3;
2660a96aa3bSJed Brown 
2670a96aa3bSJed Brown     vertices[i] = B[2 * j] + (vertices[i]/N[j]) * (B[2 * j + 1] - B[2 * j]);
2680a96aa3bSJed Brown   }
2690a96aa3bSJed Brown   (*topo)->geom = NULL;
2709566063dSJacob Faibussowitsch   PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn,&(*topo)->tree_face_to_uniq));
2710a96aa3bSJed Brown   PetscFunctionReturn(0);
2720a96aa3bSJed Brown }
2730a96aa3bSJed Brown 
2740a96aa3bSJed Brown #define DMFTopologyCreate_pforest _append_pforest(DMFTopologyCreate)
2750a96aa3bSJed Brown static PetscErrorCode DMFTopologyCreate_pforest(DM dm, DMForestTopology topologyName, DMFTopology_pforest **topo)
2760a96aa3bSJed Brown {
2770a96aa3bSJed Brown   const char     *name = (const char*) topologyName;
2780a96aa3bSJed Brown   const char     *prefix;
2790a96aa3bSJed Brown   PetscBool      isBrick, isShell, isSphere, isMoebius;
2800a96aa3bSJed Brown 
2810a96aa3bSJed Brown   PetscFunctionBegin;
2820a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
2830a96aa3bSJed Brown   PetscValidCharPointer(name,2);
2840a96aa3bSJed Brown   PetscValidPointer(topo,3);
2859566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(name,"brick",&isBrick));
2869566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(name,"shell",&isShell));
2879566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(name,"sphere",&isSphere));
2889566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(name,"moebius",&isMoebius));
2899566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm,&prefix));
2900a96aa3bSJed Brown   if (isBrick) {
2910a96aa3bSJed Brown     PetscBool flgN, flgP, flgM, flgB, useMorton = PETSC_TRUE, periodic = PETSC_FALSE;
2920a96aa3bSJed Brown     PetscInt  N[3] = {2,2,2}, P[3] = {0,0,0}, nretN = P4EST_DIM, nretP = P4EST_DIM, nretB = 2 * P4EST_DIM, i;
2934fb89dddSMatthew G. Knepley     PetscReal B[6] = {0.0,1.0,0.0,1.0,0.0,1.0}, Lstart[3] = {0., 0., 0.}, L[3] = {-1.0, -1.0, -1.0}, maxCell[3] = {-1.0, -1.0, -1.0};
2940a96aa3bSJed Brown 
2950a96aa3bSJed Brown     if (dm->setfromoptionscalled) {
2969566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options,prefix,"-dm_p4est_brick_size",N,&nretN,&flgN));
2979566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options,prefix,"-dm_p4est_brick_periodicity",P,&nretP,&flgP));
2989566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetRealArray(((PetscObject)dm)->options,prefix,"-dm_p4est_brick_bounds",B,&nretB,&flgB));
2999566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options,prefix,"-dm_p4est_brick_use_morton_curve",&useMorton,&flgM));
3001dca8a05SBarry Smith       PetscCheck(!flgN || nretN == P4EST_DIM,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_SIZ,"Need to give %d sizes in -dm_p4est_brick_size, gave %" PetscInt_FMT,P4EST_DIM,nretN);
3011dca8a05SBarry Smith       PetscCheck(!flgP || nretP == P4EST_DIM,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_SIZ,"Need to give %d periodicities in -dm_p4est_brick_periodicity, gave %" PetscInt_FMT,P4EST_DIM,nretP);
3021dca8a05SBarry Smith       PetscCheck(!flgB || nretB == 2 * P4EST_DIM,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_SIZ,"Need to give %d bounds in -dm_p4est_brick_bounds, gave %" PetscInt_FMT,P4EST_DIM,nretP);
3030a96aa3bSJed Brown     }
3040a96aa3bSJed Brown     for (i = 0; i < P4EST_DIM; i++) {
3050a96aa3bSJed Brown       P[i]  = (P[i] ? DM_BOUNDARY_PERIODIC : DM_BOUNDARY_NONE);
3060a96aa3bSJed Brown       periodic = (PetscBool)(P[i] || periodic);
3070a96aa3bSJed Brown       if (!flgB) B[2 * i + 1] = N[i];
3086858538eSMatthew G. Knepley       if (P[i]) {
3094fb89dddSMatthew G. Knepley         Lstart[i] = B[2 * i + 0];
3104fb89dddSMatthew G. Knepley         L[i] = B[2 * i + 1] - B[2 * i + 0];
3116858538eSMatthew G. Knepley         maxCell[i] = 1.1 * (L[i] / N[i]);
3126858538eSMatthew G. Knepley       }
3130a96aa3bSJed Brown     }
3149566063dSJacob Faibussowitsch     PetscCall(DMFTopologyCreateBrick_pforest(dm,N,P,B,topo,useMorton));
3154fb89dddSMatthew G. Knepley     if (periodic) PetscCall(DMSetPeriodicity(dm, maxCell, Lstart, L));
3160a96aa3bSJed Brown   } else {
3179566063dSJacob Faibussowitsch     PetscCall(PetscNewLog(dm,topo));
3180a96aa3bSJed Brown 
3190a96aa3bSJed Brown     (*topo)->refct = 1;
320792fecdfSBarry Smith     PetscCallP4estReturn((*topo)->conn,p4est_connectivity_new_byname,(name));
3210a96aa3bSJed Brown     (*topo)->geom = NULL;
3221baa6e33SBarry Smith     if (isMoebius) PetscCall(DMSetCoordinateDim(dm,3));
3230a96aa3bSJed Brown #if defined(P4_TO_P8)
3240a96aa3bSJed Brown     if (isShell) {
3250a96aa3bSJed Brown       PetscReal R2 = 1., R1 = .55;
3260a96aa3bSJed Brown 
3270a96aa3bSJed Brown       if (dm->setfromoptionscalled) {
3289566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_shell_outer_radius",&R2,NULL));
3299566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_shell_inner_radius",&R1,NULL));
3300a96aa3bSJed Brown       }
331792fecdfSBarry Smith       PetscCallP4estReturn((*topo)->geom,p8est_geometry_new_shell,((*topo)->conn,R2,R1));
3320a96aa3bSJed Brown     } else if (isSphere) {
3330a96aa3bSJed Brown       PetscReal R2 = 1., R1 = 0.191728, R0 = 0.039856;
3340a96aa3bSJed Brown 
3350a96aa3bSJed Brown       if (dm->setfromoptionscalled) {
3369566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_sphere_outer_radius",&R2,NULL));
3379566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_sphere_inner_radius",&R1,NULL));
3389566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_sphere_core_radius",&R0,NULL));
3390a96aa3bSJed Brown       }
340792fecdfSBarry Smith       PetscCallP4estReturn((*topo)->geom,p8est_geometry_new_sphere,((*topo)->conn,R2,R1,R0));
3410a96aa3bSJed Brown     }
3420a96aa3bSJed Brown #endif
3439566063dSJacob Faibussowitsch     PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn,&(*topo)->tree_face_to_uniq));
3440a96aa3bSJed Brown   }
3450a96aa3bSJed Brown   PetscFunctionReturn(0);
3460a96aa3bSJed Brown }
3470a96aa3bSJed Brown 
3480a96aa3bSJed Brown #define DMConvert_plex_pforest _append_pforest(DMConvert_plex)
3490a96aa3bSJed Brown static PetscErrorCode DMConvert_plex_pforest(DM dm, DMType newtype, DM *pforest)
3500a96aa3bSJed Brown {
3510a96aa3bSJed Brown   MPI_Comm       comm;
3520a96aa3bSJed Brown   PetscBool      isPlex;
3530a96aa3bSJed Brown   PetscInt       dim;
3540a96aa3bSJed Brown   void           *ctx;
3550a96aa3bSJed Brown 
3560a96aa3bSJed Brown   PetscFunctionBegin;
3570a96aa3bSJed Brown 
3580a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
3590a96aa3bSJed Brown   comm = PetscObjectComm((PetscObject)dm);
3609566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm,DMPLEX,&isPlex));
36128b400f6SJacob Faibussowitsch   PetscCheck(isPlex,comm,PETSC_ERR_ARG_WRONG,"Expected DM type %s, got %s",DMPLEX,((PetscObject)dm)->type_name);
3629566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm,&dim));
36363a3b9bcSJacob Faibussowitsch   PetscCheck(dim == P4EST_DIM,comm,PETSC_ERR_ARG_WRONG,"Expected DM dimension %d, got %" PetscInt_FMT,P4EST_DIM,dim);
3649566063dSJacob Faibussowitsch   PetscCall(DMCreate(comm,pforest));
3659566063dSJacob Faibussowitsch   PetscCall(DMSetType(*pforest,DMPFOREST));
3669566063dSJacob Faibussowitsch   PetscCall(DMForestSetBaseDM(*pforest,dm));
3679566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm,&ctx));
3689566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*pforest,ctx));
3699566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm,*pforest));
3700a96aa3bSJed Brown   PetscFunctionReturn(0);
3710a96aa3bSJed Brown }
3720a96aa3bSJed Brown 
3730a96aa3bSJed Brown #define DMForestDestroy_pforest _append_pforest(DMForestDestroy)
3740a96aa3bSJed Brown static PetscErrorCode DMForestDestroy_pforest(DM dm)
3750a96aa3bSJed Brown {
3760a96aa3bSJed Brown   DM_Forest         *forest  = (DM_Forest*) dm->data;
3770a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data;
3780a96aa3bSJed Brown 
3790a96aa3bSJed Brown   PetscFunctionBegin;
3800a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
381792fecdfSBarry Smith   if (pforest->lnodes) PetscCallP4est(p4est_lnodes_destroy,(pforest->lnodes));
3820a96aa3bSJed Brown   pforest->lnodes = NULL;
383792fecdfSBarry Smith   if (pforest->ghost) PetscCallP4est(p4est_ghost_destroy,(pforest->ghost));
3840a96aa3bSJed Brown   pforest->ghost = NULL;
385792fecdfSBarry Smith   if (pforest->forest) PetscCallP4est(p4est_destroy,(pforest->forest));
3860a96aa3bSJed Brown   pforest->forest = NULL;
3879566063dSJacob Faibussowitsch   PetscCall(DMFTopologyDestroy_pforest(&pforest->topo));
3889566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm,PetscStringize(DMConvert_plex_pforest) "_C",NULL));
3899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm,PetscStringize(DMConvert_pforest_plex) "_C",NULL));
3902e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMSetUpGLVisViewer_C",NULL));
3919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMCreateNeumannOverlap_C",NULL));
3922e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexGetOverlap_C",NULL));
3932e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)dm,"MatComputeNeumannOverlap_C",NULL));
3949566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->ghostName));
3959566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&pforest->plex));
3969566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&pforest->pointAdaptToSelfSF));
3979566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&pforest->pointSelfToAdaptSF));
3989566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->pointAdaptToSelfCids));
3999566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->pointSelfToAdaptCids));
4009566063dSJacob Faibussowitsch   PetscCall(PetscFree(forest->data));
4010a96aa3bSJed Brown   PetscFunctionReturn(0);
4020a96aa3bSJed Brown }
4030a96aa3bSJed Brown 
4040a96aa3bSJed Brown #define DMForestTemplate_pforest _append_pforest(DMForestTemplate)
4050a96aa3bSJed Brown static PetscErrorCode DMForestTemplate_pforest(DM dm, DM tdm)
4060a96aa3bSJed Brown {
4070a96aa3bSJed Brown   DM_Forest_pforest *pforest  = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data;
4080a96aa3bSJed Brown   DM_Forest_pforest *tpforest = (DM_Forest_pforest*) ((DM_Forest*) tdm->data)->data;
4090a96aa3bSJed Brown 
4100a96aa3bSJed Brown   PetscFunctionBegin;
4110a96aa3bSJed Brown   if (pforest->topo) pforest->topo->refct++;
4129566063dSJacob Faibussowitsch   PetscCall(DMFTopologyDestroy_pforest(&(tpforest->topo)));
4130a96aa3bSJed Brown   tpforest->topo = pforest->topo;
4140a96aa3bSJed Brown   PetscFunctionReturn(0);
4150a96aa3bSJed Brown }
4160a96aa3bSJed Brown 
4170a96aa3bSJed Brown #define DMPlexCreateConnectivity_pforest _append_pforest(DMPlexCreateConnectivity)
4180a96aa3bSJed Brown static PetscErrorCode DMPlexCreateConnectivity_pforest(DM,p4est_connectivity_t**,PetscInt**);
4190a96aa3bSJed Brown 
4200a96aa3bSJed Brown typedef struct _PforestAdaptCtx
4210a96aa3bSJed Brown {
4220a96aa3bSJed Brown   PetscInt  maxLevel;
4230a96aa3bSJed Brown   PetscInt  minLevel;
4240a96aa3bSJed Brown   PetscInt  currLevel;
4250a96aa3bSJed Brown   PetscBool anyChange;
4260a96aa3bSJed Brown }
4270a96aa3bSJed Brown PforestAdaptCtx;
4280a96aa3bSJed Brown 
4290a96aa3bSJed Brown static int pforest_coarsen_currlevel(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[])
4300a96aa3bSJed Brown {
4310a96aa3bSJed Brown   PforestAdaptCtx *ctx      = (PforestAdaptCtx*) p4est->user_pointer;
4320a96aa3bSJed Brown   PetscInt        minLevel  = ctx->minLevel;
4330a96aa3bSJed Brown   PetscInt        currLevel = ctx->currLevel;
4340a96aa3bSJed Brown 
4350a96aa3bSJed Brown   if (quadrants[0]->level <= minLevel) return 0;
4360a96aa3bSJed Brown   return (int) ((PetscInt) quadrants[0]->level == currLevel);
4370a96aa3bSJed Brown }
4380a96aa3bSJed Brown 
4390a96aa3bSJed Brown static int pforest_coarsen_uniform(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[])
4400a96aa3bSJed Brown {
4410a96aa3bSJed Brown   PforestAdaptCtx *ctx     = (PforestAdaptCtx*) p4est->user_pointer;
4420a96aa3bSJed Brown   PetscInt        minLevel = ctx->minLevel;
4430a96aa3bSJed Brown 
4440a96aa3bSJed Brown   return (int) ((PetscInt) quadrants[0]->level > minLevel);
4450a96aa3bSJed Brown }
4460a96aa3bSJed Brown 
4470a96aa3bSJed Brown static int pforest_coarsen_flag_any(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[])
4480a96aa3bSJed Brown {
4490a96aa3bSJed Brown   PetscInt        i;
4500a96aa3bSJed Brown   PetscBool       any      = PETSC_FALSE;
4510a96aa3bSJed Brown   PforestAdaptCtx *ctx     = (PforestAdaptCtx*) p4est->user_pointer;
4520a96aa3bSJed Brown   PetscInt        minLevel = ctx->minLevel;
4530a96aa3bSJed Brown 
4540a96aa3bSJed Brown   if (quadrants[0]->level <= minLevel) return 0;
4550a96aa3bSJed Brown   for (i = 0; i < P4EST_CHILDREN; i++) {
4560a96aa3bSJed Brown     if (quadrants[i]->p.user_int == DM_ADAPT_KEEP) {
4570a96aa3bSJed Brown       any = PETSC_FALSE;
4580a96aa3bSJed Brown       break;
4590a96aa3bSJed Brown     }
4600a96aa3bSJed Brown     if (quadrants[i]->p.user_int == DM_ADAPT_COARSEN) {
4610a96aa3bSJed Brown       any = PETSC_TRUE;
4620a96aa3bSJed Brown       break;
4630a96aa3bSJed Brown     }
4640a96aa3bSJed Brown   }
4650a96aa3bSJed Brown   return any ? 1 : 0;
4660a96aa3bSJed Brown }
4670a96aa3bSJed Brown 
4680a96aa3bSJed Brown static int pforest_coarsen_flag_all(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[])
4690a96aa3bSJed Brown {
4700a96aa3bSJed Brown   PetscInt        i;
4710a96aa3bSJed Brown   PetscBool       all      = PETSC_TRUE;
4720a96aa3bSJed Brown   PforestAdaptCtx *ctx     = (PforestAdaptCtx*) p4est->user_pointer;
4730a96aa3bSJed Brown   PetscInt        minLevel = ctx->minLevel;
4740a96aa3bSJed Brown 
4750a96aa3bSJed Brown   if (quadrants[0]->level <= minLevel) return 0;
4760a96aa3bSJed Brown   for (i = 0; i < P4EST_CHILDREN; i++) {
4770a96aa3bSJed Brown     if (quadrants[i]->p.user_int != DM_ADAPT_COARSEN) {
4780a96aa3bSJed Brown       all = PETSC_FALSE;
4790a96aa3bSJed Brown       break;
4800a96aa3bSJed Brown     }
4810a96aa3bSJed Brown   }
4820a96aa3bSJed Brown   return all ? 1 : 0;
4830a96aa3bSJed Brown }
4840a96aa3bSJed Brown 
4850a96aa3bSJed Brown static void pforest_init_determine(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
4860a96aa3bSJed Brown {
4870a96aa3bSJed Brown   quadrant->p.user_int = DM_ADAPT_DETERMINE;
4880a96aa3bSJed Brown }
4890a96aa3bSJed Brown 
4900a96aa3bSJed Brown static int pforest_refine_uniform(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
4910a96aa3bSJed Brown {
4920a96aa3bSJed Brown   PforestAdaptCtx *ctx     = (PforestAdaptCtx*) p4est->user_pointer;
4930a96aa3bSJed Brown   PetscInt        maxLevel = ctx->maxLevel;
4940a96aa3bSJed Brown 
4950a96aa3bSJed Brown   return ((PetscInt) quadrant->level < maxLevel);
4960a96aa3bSJed Brown }
4970a96aa3bSJed Brown 
4980a96aa3bSJed Brown static int pforest_refine_flag(p4est_t * p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant)
4990a96aa3bSJed Brown {
5000a96aa3bSJed Brown   PforestAdaptCtx *ctx     = (PforestAdaptCtx*) p4est->user_pointer;
5010a96aa3bSJed Brown   PetscInt        maxLevel = ctx->maxLevel;
5020a96aa3bSJed Brown 
5030a96aa3bSJed Brown   if ((PetscInt) quadrant->level >= maxLevel) return 0;
5040a96aa3bSJed Brown 
5050a96aa3bSJed Brown   return (quadrant->p.user_int == DM_ADAPT_REFINE);
5060a96aa3bSJed Brown }
5070a96aa3bSJed Brown 
5080a96aa3bSJed Brown static PetscErrorCode DMPforestComputeLocalCellTransferSF_loop(p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, p4est_topidx_t flt, p4est_topidx_t llt, PetscInt *toFineLeavesCount, PetscInt *toLeaves, PetscSFNode *fromRoots, PetscInt *fromFineLeavesCount, PetscInt *fromLeaves, PetscSFNode *toRoots)
5090a96aa3bSJed Brown {
5100a96aa3bSJed Brown   PetscMPIInt    rank = p4estFrom->mpirank;
5110a96aa3bSJed Brown   p4est_topidx_t t;
5120a96aa3bSJed Brown   PetscInt       toFineLeaves = 0, fromFineLeaves = 0;
5130a96aa3bSJed Brown 
5140a96aa3bSJed Brown   PetscFunctionBegin;
5150a96aa3bSJed Brown   for (t = flt; t <= llt; t++) { /* count roots and leaves */
5160a96aa3bSJed Brown     p4est_tree_t     *treeFrom  = &(((p4est_tree_t*) p4estFrom->trees->array)[t]);
5170a96aa3bSJed Brown     p4est_tree_t     *treeTo    = &(((p4est_tree_t*) p4estTo->trees->array)[t]);
5180a96aa3bSJed Brown     p4est_quadrant_t *firstFrom = &treeFrom->first_desc;
5190a96aa3bSJed Brown     p4est_quadrant_t *firstTo   = &treeTo->first_desc;
5200a96aa3bSJed Brown     PetscInt         numFrom    = (PetscInt) treeFrom->quadrants.elem_count;
5210a96aa3bSJed Brown     PetscInt         numTo      = (PetscInt) treeTo->quadrants.elem_count;
5220a96aa3bSJed Brown     p4est_quadrant_t *quadsFrom = (p4est_quadrant_t*) treeFrom->quadrants.array;
5230a96aa3bSJed Brown     p4est_quadrant_t *quadsTo   = (p4est_quadrant_t*) treeTo->quadrants.array;
5240a96aa3bSJed Brown     PetscInt         currentFrom, currentTo;
5250a96aa3bSJed Brown     PetscInt         treeOffsetFrom = (PetscInt) treeFrom->quadrants_offset;
5260a96aa3bSJed Brown     PetscInt         treeOffsetTo   = (PetscInt) treeTo->quadrants_offset;
5270a96aa3bSJed Brown     int              comp;
5280a96aa3bSJed Brown 
529792fecdfSBarry Smith     PetscCallP4estReturn(comp,p4est_quadrant_is_equal,(firstFrom,firstTo));
53028b400f6SJacob Faibussowitsch     PetscCheck(comp,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"non-matching partitions");
5310a96aa3bSJed Brown 
5320a96aa3bSJed Brown     for (currentFrom = 0, currentTo = 0; currentFrom < numFrom && currentTo < numTo;) {
5330a96aa3bSJed Brown       p4est_quadrant_t *quadFrom = &quadsFrom[currentFrom];
5340a96aa3bSJed Brown       p4est_quadrant_t *quadTo   = &quadsTo[currentTo];
5350a96aa3bSJed Brown 
5360a96aa3bSJed Brown       if (quadFrom->level == quadTo->level) {
5370a96aa3bSJed Brown         if (toLeaves) {
5380a96aa3bSJed Brown           toLeaves[toFineLeaves]        = currentTo + treeOffsetTo + ToOffset;
5390a96aa3bSJed Brown           fromRoots[toFineLeaves].rank  = rank;
5400a96aa3bSJed Brown           fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset;
5410a96aa3bSJed Brown         }
5420a96aa3bSJed Brown         toFineLeaves++;
5430a96aa3bSJed Brown         currentFrom++;
5440a96aa3bSJed Brown         currentTo++;
5450a96aa3bSJed Brown       } else {
5460a96aa3bSJed Brown         int fromIsAncestor;
5470a96aa3bSJed Brown 
548792fecdfSBarry Smith         PetscCallP4estReturn(fromIsAncestor,p4est_quadrant_is_ancestor,(quadFrom,quadTo));
5490a96aa3bSJed Brown         if (fromIsAncestor) {
5500a96aa3bSJed Brown           p4est_quadrant_t lastDesc;
5510a96aa3bSJed Brown 
5520a96aa3bSJed Brown           if (toLeaves) {
5530a96aa3bSJed Brown             toLeaves[toFineLeaves]        = currentTo + treeOffsetTo + ToOffset;
5540a96aa3bSJed Brown             fromRoots[toFineLeaves].rank  = rank;
5550a96aa3bSJed Brown             fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset;
5560a96aa3bSJed Brown           }
5570a96aa3bSJed Brown           toFineLeaves++;
5580a96aa3bSJed Brown           currentTo++;
559792fecdfSBarry Smith           PetscCallP4est(p4est_quadrant_last_descendant,(quadFrom,&lastDesc,quadTo->level));
560792fecdfSBarry Smith           PetscCallP4estReturn(comp,p4est_quadrant_is_equal,(quadTo,&lastDesc));
5610a96aa3bSJed Brown           if (comp) currentFrom++;
5620a96aa3bSJed Brown         } else {
5630a96aa3bSJed Brown           p4est_quadrant_t lastDesc;
5640a96aa3bSJed Brown 
5650a96aa3bSJed Brown           if (fromLeaves) {
5660a96aa3bSJed Brown             fromLeaves[fromFineLeaves]    = currentFrom + treeOffsetFrom + FromOffset;
5670a96aa3bSJed Brown             toRoots[fromFineLeaves].rank  = rank;
5680a96aa3bSJed Brown             toRoots[fromFineLeaves].index = currentTo + treeOffsetTo + ToOffset;
5690a96aa3bSJed Brown           }
5700a96aa3bSJed Brown           fromFineLeaves++;
5710a96aa3bSJed Brown           currentFrom++;
572792fecdfSBarry Smith           PetscCallP4est(p4est_quadrant_last_descendant,(quadTo,&lastDesc,quadFrom->level));
573792fecdfSBarry Smith           PetscCallP4estReturn(comp,p4est_quadrant_is_equal,(quadFrom,&lastDesc));
5740a96aa3bSJed Brown           if (comp) currentTo++;
5750a96aa3bSJed Brown         }
5760a96aa3bSJed Brown       }
5770a96aa3bSJed Brown     }
5780a96aa3bSJed Brown   }
5790a96aa3bSJed Brown   *toFineLeavesCount   = toFineLeaves;
5800a96aa3bSJed Brown   *fromFineLeavesCount = fromFineLeaves;
5810a96aa3bSJed Brown   PetscFunctionReturn(0);
5820a96aa3bSJed Brown }
5830a96aa3bSJed Brown 
5840a96aa3bSJed Brown /* Compute the maximum level across all the trees */
5850a96aa3bSJed Brown static PetscErrorCode DMPforestGetRefinementLevel(DM dm, PetscInt *lev)
5860a96aa3bSJed Brown {
5870a96aa3bSJed Brown   p4est_topidx_t    t, flt, llt;
5880a96aa3bSJed Brown   DM_Forest         *forest  = (DM_Forest*) dm->data;
5890a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data;
5900a96aa3bSJed Brown   PetscInt          maxlevelloc = 0;
5910a96aa3bSJed Brown   p4est_t           *p4est;
5920a96aa3bSJed Brown 
5930a96aa3bSJed Brown   PetscFunctionBegin;
59428b400f6SJacob Faibussowitsch   PetscCheck(pforest,PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing DM_Forest_pforest");
59528b400f6SJacob Faibussowitsch   PetscCheck(pforest->forest,PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Missing p4est_t");
5960a96aa3bSJed Brown   p4est = pforest->forest;
5970a96aa3bSJed Brown   flt   = p4est->first_local_tree;
5980a96aa3bSJed Brown   llt   = p4est->last_local_tree;
5990a96aa3bSJed Brown   for (t = flt; t <= llt; t++) {
6000a96aa3bSJed Brown     p4est_tree_t *tree  = &(((p4est_tree_t*) p4est->trees->array)[t]);
6010a96aa3bSJed Brown     maxlevelloc = PetscMax((PetscInt)tree->maxlevel,maxlevelloc);
6020a96aa3bSJed Brown   }
6031c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&maxlevelloc,lev,1,MPIU_INT,MPI_MAX,PetscObjectComm((PetscObject)dm)));
6040a96aa3bSJed Brown   PetscFunctionReturn(0);
6050a96aa3bSJed Brown }
6060a96aa3bSJed Brown 
6070a96aa3bSJed Brown /* Puts identity in coarseToFine */
6080a96aa3bSJed Brown /* assumes a matching partition */
6090a96aa3bSJed Brown static PetscErrorCode DMPforestComputeLocalCellTransferSF(MPI_Comm comm, p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, PetscSF *fromCoarseToFine, PetscSF *toCoarseFromFine)
6100a96aa3bSJed Brown {
6110a96aa3bSJed Brown   p4est_topidx_t flt, llt;
6120a96aa3bSJed Brown   PetscSF        fromCoarse, toCoarse;
6130a96aa3bSJed Brown   PetscInt       numRootsFrom, numRootsTo, numLeavesFrom, numLeavesTo;
6140a96aa3bSJed Brown   PetscInt       *fromLeaves = NULL, *toLeaves = NULL;
6150a96aa3bSJed Brown   PetscSFNode    *fromRoots  = NULL, *toRoots = NULL;
6160a96aa3bSJed Brown 
6170a96aa3bSJed Brown   PetscFunctionBegin;
6180a96aa3bSJed Brown   flt  = p4estFrom->first_local_tree;
6190a96aa3bSJed Brown   llt  = p4estFrom->last_local_tree;
6209566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm,&fromCoarse));
6210a96aa3bSJed Brown   if (toCoarseFromFine) {
6229566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm,&toCoarse));
6230a96aa3bSJed Brown   }
6240a96aa3bSJed Brown   numRootsFrom = p4estFrom->local_num_quadrants + FromOffset;
6250a96aa3bSJed Brown   numRootsTo   = p4estTo->local_num_quadrants + ToOffset;
6269566063dSJacob Faibussowitsch   PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom,FromOffset,p4estTo,ToOffset,flt,llt,&numLeavesTo,NULL,NULL,&numLeavesFrom,NULL,NULL));
6279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numLeavesTo,&toLeaves));
6289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numLeavesTo,&fromRoots));
6290a96aa3bSJed Brown   if (toCoarseFromFine) {
6309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeavesFrom,&fromLeaves));
6319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeavesFrom,&fromRoots));
6320a96aa3bSJed Brown   }
6339566063dSJacob Faibussowitsch   PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom,FromOffset,p4estTo,ToOffset,flt,llt,&numLeavesTo,toLeaves,fromRoots,&numLeavesFrom,fromLeaves,toRoots));
6340a96aa3bSJed Brown   if (!ToOffset && (numLeavesTo == numRootsTo)) { /* compress */
6359566063dSJacob Faibussowitsch     PetscCall(PetscFree(toLeaves));
6369566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(fromCoarse,numRootsFrom,numLeavesTo,NULL,PETSC_OWN_POINTER,fromRoots,PETSC_OWN_POINTER));
6371baa6e33SBarry Smith   } else PetscCall(PetscSFSetGraph(fromCoarse,numRootsFrom,numLeavesTo,toLeaves,PETSC_OWN_POINTER,fromRoots,PETSC_OWN_POINTER));
6380a96aa3bSJed Brown   *fromCoarseToFine = fromCoarse;
6390a96aa3bSJed Brown   if (toCoarseFromFine) {
6409566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(toCoarse,numRootsTo,numLeavesFrom,fromLeaves,PETSC_OWN_POINTER,toRoots,PETSC_OWN_POINTER));
6410a96aa3bSJed Brown     *toCoarseFromFine = toCoarse;
6420a96aa3bSJed Brown   }
6430a96aa3bSJed Brown   PetscFunctionReturn(0);
6440a96aa3bSJed Brown }
6450a96aa3bSJed Brown 
6460a96aa3bSJed Brown /* range of processes whose B sections overlap this ranks A section */
6470a96aa3bSJed Brown static PetscErrorCode DMPforestComputeOverlappingRanks(PetscMPIInt size, PetscMPIInt rank, p4est_t *p4estA, p4est_t *p4estB, PetscInt *startB, PetscInt *endB)
6480a96aa3bSJed Brown {
6490a96aa3bSJed Brown   p4est_quadrant_t * myCoarseStart = &(p4estA->global_first_position[rank]);
6500a96aa3bSJed Brown   p4est_quadrant_t * myCoarseEnd   = &(p4estA->global_first_position[rank+1]);
6510a96aa3bSJed Brown   p4est_quadrant_t * globalFirstB  = p4estB->global_first_position;
6520a96aa3bSJed Brown 
6530a96aa3bSJed Brown   PetscFunctionBegin;
6540a96aa3bSJed Brown   *startB = -1;
6550a96aa3bSJed Brown   *endB   = -1;
6560a96aa3bSJed Brown   if (p4estA->local_num_quadrants) {
6570a96aa3bSJed Brown     PetscInt lo, hi, guess;
6580a96aa3bSJed Brown     /* binary search to find interval containing myCoarseStart */
6590a96aa3bSJed Brown     lo    = 0;
6600a96aa3bSJed Brown     hi    = size;
6610a96aa3bSJed Brown     guess = rank;
6620a96aa3bSJed Brown     while (1) {
6630a96aa3bSJed Brown       int startCompMy, myCompEnd;
6640a96aa3bSJed Brown 
665792fecdfSBarry Smith       PetscCallP4estReturn(startCompMy,p4est_quadrant_compare_piggy,(&globalFirstB[guess],myCoarseStart));
666792fecdfSBarry Smith       PetscCallP4estReturn(myCompEnd,p4est_quadrant_compare_piggy,(myCoarseStart,&globalFirstB[guess+1]));
6670a96aa3bSJed Brown       if (startCompMy <= 0 && myCompEnd < 0) {
6680a96aa3bSJed Brown         *startB = guess;
6690a96aa3bSJed Brown         break;
6700a96aa3bSJed Brown       } else if (startCompMy > 0) {  /* guess is to high */
6710a96aa3bSJed Brown         hi = guess;
6720a96aa3bSJed Brown       } else { /* guess is to low */
6730a96aa3bSJed Brown         lo = guess + 1;
6740a96aa3bSJed Brown       }
6750a96aa3bSJed Brown       guess = lo + (hi - lo) / 2;
6760a96aa3bSJed Brown     }
6770a96aa3bSJed Brown     /* reset bounds, but not guess */
6780a96aa3bSJed Brown     lo = 0;
6790a96aa3bSJed Brown     hi = size;
6800a96aa3bSJed Brown     while (1) {
6810a96aa3bSJed Brown       int startCompMy, myCompEnd;
6820a96aa3bSJed Brown 
683792fecdfSBarry Smith       PetscCallP4estReturn(startCompMy,p4est_quadrant_compare_piggy,(&globalFirstB[guess],myCoarseEnd));
684792fecdfSBarry Smith       PetscCallP4estReturn(myCompEnd,p4est_quadrant_compare_piggy,(myCoarseEnd,&globalFirstB[guess+1]));
6850a96aa3bSJed Brown       if (startCompMy < 0 && myCompEnd <= 0) { /* notice that the comparison operators are different from above */
6860a96aa3bSJed Brown         *endB = guess + 1;
6870a96aa3bSJed Brown         break;
6880a96aa3bSJed Brown       } else if (startCompMy >= 0) { /* guess is to high */
6890a96aa3bSJed Brown         hi = guess;
6900a96aa3bSJed Brown       } else { /* guess is to low */
6910a96aa3bSJed Brown         lo = guess + 1;
6920a96aa3bSJed Brown       }
6930a96aa3bSJed Brown       guess = lo + (hi - lo) / 2;
6940a96aa3bSJed Brown     }
6950a96aa3bSJed Brown   }
6960a96aa3bSJed Brown   PetscFunctionReturn(0);
6970a96aa3bSJed Brown }
6980a96aa3bSJed Brown 
6990a96aa3bSJed Brown static PetscErrorCode DMPforestGetPlex(DM,DM*);
7000a96aa3bSJed Brown 
7010a96aa3bSJed Brown #define DMSetUp_pforest _append_pforest(DMSetUp)
7020a96aa3bSJed Brown static PetscErrorCode DMSetUp_pforest(DM dm)
7030a96aa3bSJed Brown {
7040a96aa3bSJed Brown   DM_Forest         *forest  = (DM_Forest*) dm->data;
7050a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data;
7060a96aa3bSJed Brown   DM                base, adaptFrom;
7070a96aa3bSJed Brown   DMForestTopology  topoName;
7080a96aa3bSJed Brown   PetscSF           preCoarseToFine = NULL, coarseToPreFine = NULL;
7090a96aa3bSJed Brown   PforestAdaptCtx   ctx;
7100a96aa3bSJed Brown 
7110a96aa3bSJed Brown   PetscFunctionBegin;
7120a96aa3bSJed Brown   ctx.minLevel  = PETSC_MAX_INT;
7130a96aa3bSJed Brown   ctx.maxLevel  = 0;
7140a96aa3bSJed Brown   ctx.currLevel = 0;
7150a96aa3bSJed Brown   ctx.anyChange = PETSC_FALSE;
7160a96aa3bSJed Brown   /* sanity check */
7179566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dm,&adaptFrom));
7189566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm,&base));
7199566063dSJacob Faibussowitsch   PetscCall(DMForestGetTopology(dm,&topoName));
7201dca8a05SBarry Smith   PetscCheck(adaptFrom || base || topoName,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"A forest needs a topology, a base DM, or a DM to adapt from");
7210a96aa3bSJed Brown 
7220a96aa3bSJed Brown   /* === Step 1: DMFTopology === */
7230a96aa3bSJed Brown   if (adaptFrom) { /* reference already created topology */
7240a96aa3bSJed Brown     PetscBool         ispforest;
7250a96aa3bSJed Brown     DM_Forest         *aforest  = (DM_Forest*) adaptFrom->data;
7260a96aa3bSJed Brown     DM_Forest_pforest *apforest = (DM_Forest_pforest*) aforest->data;
7270a96aa3bSJed Brown 
7289566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)adaptFrom,DMPFOREST,&ispforest));
72928b400f6SJacob Faibussowitsch     PetscCheck(ispforest,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_NOTSAMETYPE,"Trying to adapt from %s, which is not %s",((PetscObject)adaptFrom)->type_name,DMPFOREST);
73028b400f6SJacob Faibussowitsch     PetscCheck(apforest->topo,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"The pre-adaptation forest must have a topology");
7319566063dSJacob Faibussowitsch     PetscCall(DMSetUp(adaptFrom));
7329566063dSJacob Faibussowitsch     PetscCall(DMForestGetBaseDM(dm,&base));
7339566063dSJacob Faibussowitsch     PetscCall(DMForestGetTopology(dm,&topoName));
7340a96aa3bSJed Brown   } else if (base) { /* construct a connectivity from base */
7350a96aa3bSJed Brown     PetscBool isPlex, isDA;
7360a96aa3bSJed Brown 
7379566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)base,&topoName));
7389566063dSJacob Faibussowitsch     PetscCall(DMForestSetTopology(dm,topoName));
7399566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)base,DMPLEX,&isPlex));
7409566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)base,DMDA,&isDA));
7410a96aa3bSJed Brown     if (isPlex) {
7420a96aa3bSJed Brown       MPI_Comm             comm = PetscObjectComm((PetscObject)dm);
7430a96aa3bSJed Brown       PetscInt             depth;
7440a96aa3bSJed Brown       PetscMPIInt          size;
7450a96aa3bSJed Brown       p4est_connectivity_t *conn = NULL;
7460a96aa3bSJed Brown       DMFTopology_pforest  *topo;
7470a96aa3bSJed Brown       PetscInt             *tree_face_to_uniq = NULL;
7480a96aa3bSJed Brown 
7499566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepth(base,&depth));
7500a96aa3bSJed Brown       if (depth == 1) {
7510a96aa3bSJed Brown         DM connDM;
7520a96aa3bSJed Brown 
7539566063dSJacob Faibussowitsch         PetscCall(DMPlexInterpolate(base,&connDM));
7540a96aa3bSJed Brown         base = connDM;
7559566063dSJacob Faibussowitsch         PetscCall(DMForestSetBaseDM(dm,base));
7569566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&connDM));
75763a3b9bcSJacob Faibussowitsch       } else PetscCheck(depth == P4EST_DIM,comm,PETSC_ERR_ARG_WRONG,"Base plex is neither interpolated nor uninterpolated? depth %" PetscInt_FMT ", expected 2 or %d",depth,P4EST_DIM + 1);
7589566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_size(comm,&size));
7590a96aa3bSJed Brown       if (size > 1) {
7600a96aa3bSJed Brown         DM      dmRedundant;
7610a96aa3bSJed Brown         PetscSF sf;
7620a96aa3bSJed Brown 
7639566063dSJacob Faibussowitsch         PetscCall(DMPlexGetRedundantDM(base,&sf,&dmRedundant));
76428b400f6SJacob Faibussowitsch         PetscCheck(dmRedundant,comm,PETSC_ERR_PLIB,"Could not create redundant DM");
7659566063dSJacob Faibussowitsch         PetscCall(PetscObjectCompose((PetscObject)dmRedundant,"_base_migration_sf",(PetscObject)sf));
7669566063dSJacob Faibussowitsch         PetscCall(PetscSFDestroy(&sf));
7670a96aa3bSJed Brown         base = dmRedundant;
7689566063dSJacob Faibussowitsch         PetscCall(DMForestSetBaseDM(dm,base));
7699566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&dmRedundant));
7700a96aa3bSJed Brown       }
7719566063dSJacob Faibussowitsch       PetscCall(DMViewFromOptions(base,NULL,"-dm_p4est_base_view"));
7729566063dSJacob Faibussowitsch       PetscCall(DMPlexCreateConnectivity_pforest(base,&conn,&tree_face_to_uniq));
7739566063dSJacob Faibussowitsch       PetscCall(PetscNewLog(dm,&topo));
7740a96aa3bSJed Brown       topo->refct = 1;
7750a96aa3bSJed Brown       topo->conn  = conn;
7760a96aa3bSJed Brown       topo->geom  = NULL;
7770a96aa3bSJed Brown       {
7780a96aa3bSJed Brown         PetscErrorCode (*map)(DM,PetscInt,PetscInt,const PetscReal[],PetscReal[],void*);
7790a96aa3bSJed Brown         void           *mapCtx;
7800a96aa3bSJed Brown 
7819566063dSJacob Faibussowitsch         PetscCall(DMForestGetBaseCoordinateMapping(dm,&map,&mapCtx));
7820a96aa3bSJed Brown         if (map) {
7830a96aa3bSJed Brown           DM_Forest_geometry_pforest *geom_pforest;
7840a96aa3bSJed Brown           p4est_geometry_t           *geom;
7850a96aa3bSJed Brown 
7869566063dSJacob Faibussowitsch           PetscCall(PetscNew(&geom_pforest));
7879566063dSJacob Faibussowitsch           PetscCall(DMGetCoordinateDim(dm,&geom_pforest->coordDim));
7880a96aa3bSJed Brown           geom_pforest->map    = map;
7890a96aa3bSJed Brown           geom_pforest->mapCtx = mapCtx;
790792fecdfSBarry Smith           PetscCallP4estReturn(geom_pforest->inner,p4est_geometry_new_connectivity,(conn));
7919566063dSJacob Faibussowitsch           PetscCall(PetscNew(&geom));
7920a96aa3bSJed Brown           geom->name    = topoName;
7930a96aa3bSJed Brown           geom->user    = geom_pforest;
7940a96aa3bSJed Brown           geom->X       = GeometryMapping_pforest;
7950a96aa3bSJed Brown           geom->destroy = GeometryDestroy_pforest;
7960a96aa3bSJed Brown           topo->geom    = geom;
7970a96aa3bSJed Brown         }
7980a96aa3bSJed Brown       }
7990a96aa3bSJed Brown       topo->tree_face_to_uniq = tree_face_to_uniq;
8000a96aa3bSJed Brown       pforest->topo           = topo;
80128b400f6SJacob Faibussowitsch     } else PetscCheck(!isDA,PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Not implemented yet");
8020a96aa3bSJed Brown #if 0
8030a96aa3bSJed Brown       PetscInt N[3], P[3];
8040a96aa3bSJed Brown 
8050a96aa3bSJed Brown       /* get the sizes, periodicities */
8060a96aa3bSJed Brown       /* ... */
8070a96aa3bSJed Brown                                                                   /* don't use Morton order */
8089566063dSJacob Faibussowitsch       PetscCall(DMFTopologyCreateBrick_pforest(dm,N,P,&pforest->topo,PETSC_FALSE));
8090a96aa3bSJed Brown #endif
8100a96aa3bSJed Brown     {
8110a96aa3bSJed Brown       PetscInt numLabels, l;
8120a96aa3bSJed Brown 
8139566063dSJacob Faibussowitsch       PetscCall(DMGetNumLabels(base,&numLabels));
8140a96aa3bSJed Brown       for (l = 0; l < numLabels; l++) {
8150a96aa3bSJed Brown         PetscBool  isDepth, isGhost, isVTK, isDim, isCellType;
8160a96aa3bSJed Brown         DMLabel    label, labelNew;
8170a96aa3bSJed Brown         PetscInt   defVal;
8180a96aa3bSJed Brown         const char *name;
8190a96aa3bSJed Brown 
8209566063dSJacob Faibussowitsch         PetscCall(DMGetLabelName(base, l, &name));
8219566063dSJacob Faibussowitsch         PetscCall(DMGetLabelByNum(base, l, &label));
8229566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name,"depth",&isDepth));
8230a96aa3bSJed Brown         if (isDepth) continue;
8249566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name,"dim",&isDim));
8250a96aa3bSJed Brown         if (isDim) continue;
8269566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name,"celltype",&isCellType));
8270a96aa3bSJed Brown         if (isCellType) continue;
8289566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name,"ghost",&isGhost));
8290a96aa3bSJed Brown         if (isGhost) continue;
8309566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name,"vtk",&isVTK));
8310a96aa3bSJed Brown         if (isVTK) continue;
8329566063dSJacob Faibussowitsch         PetscCall(DMCreateLabel(dm,name));
8339566063dSJacob Faibussowitsch         PetscCall(DMGetLabel(dm,name,&labelNew));
8349566063dSJacob Faibussowitsch         PetscCall(DMLabelGetDefaultValue(label,&defVal));
8359566063dSJacob Faibussowitsch         PetscCall(DMLabelSetDefaultValue(labelNew,defVal));
8360a96aa3bSJed Brown       }
8370a96aa3bSJed Brown       /* map dm points (internal plex) to base
8380a96aa3bSJed Brown          we currently create the subpoint_map for the entire hierarchy, starting from the finest forest
8390a96aa3bSJed Brown          and propagating back to the coarsest
8400a96aa3bSJed Brown          This is not an optimal approach, since we need the map only on the coarsest level
8410a96aa3bSJed Brown          during DMForestTransferVecFromBase */
8429566063dSJacob Faibussowitsch       PetscCall(DMForestGetMinimumRefinement(dm,&l));
8430a96aa3bSJed Brown       if (!l) {
8449566063dSJacob Faibussowitsch         PetscCall(DMCreateLabel(dm,"_forest_base_subpoint_map"));
8450a96aa3bSJed Brown       }
8460a96aa3bSJed Brown     }
8470a96aa3bSJed Brown   } else { /* construct from topology name */
8480a96aa3bSJed Brown     DMFTopology_pforest *topo;
8490a96aa3bSJed Brown 
8509566063dSJacob Faibussowitsch     PetscCall(DMFTopologyCreate_pforest(dm,topoName,&topo));
8510a96aa3bSJed Brown     pforest->topo = topo;
8520a96aa3bSJed Brown     /* TODO: construct base? */
8530a96aa3bSJed Brown   }
8540a96aa3bSJed Brown 
8550a96aa3bSJed Brown   /* === Step 2: get the leaves of the forest === */
8560a96aa3bSJed Brown   if (adaptFrom) { /* start with the old forest */
8570a96aa3bSJed Brown     DMLabel           adaptLabel;
8580a96aa3bSJed Brown     PetscInt          defaultValue;
8590a96aa3bSJed Brown     PetscInt          numValues, numValuesGlobal, cLocalStart, count;
8600a96aa3bSJed Brown     DM_Forest         *aforest  = (DM_Forest*) adaptFrom->data;
8610a96aa3bSJed Brown     DM_Forest_pforest *apforest = (DM_Forest_pforest*) aforest->data;
8620a96aa3bSJed Brown     PetscBool         computeAdaptSF;
8630a96aa3bSJed Brown     p4est_topidx_t    flt, llt, t;
8640a96aa3bSJed Brown 
8650a96aa3bSJed Brown     flt         = apforest->forest->first_local_tree;
8660a96aa3bSJed Brown     llt         = apforest->forest->last_local_tree;
8670a96aa3bSJed Brown     cLocalStart = apforest->cLocalStart;
8689566063dSJacob Faibussowitsch     PetscCall(DMForestGetComputeAdaptivitySF(dm,&computeAdaptSF));
869792fecdfSBarry Smith     PetscCallP4estReturn(pforest->forest,p4est_copy,(apforest->forest, 0)); /* 0 indicates no data copying */
8709566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityLabel(dm,&adaptLabel));
8710a96aa3bSJed Brown     if (adaptLabel) {
8720a96aa3bSJed Brown       /* apply the refinement/coarsening by flags, plus minimum/maximum refinement */
8739566063dSJacob Faibussowitsch       PetscCall(DMLabelGetNumValues(adaptLabel,&numValues));
8749566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allreduce(&numValues,&numValuesGlobal,1,MPIU_INT,MPI_MAX,PetscObjectComm((PetscObject)adaptFrom)));
8759566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(adaptLabel,&defaultValue));
8760a96aa3bSJed Brown       if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN_LAST) { /* uniform coarsen of the last level only (equivalent to DM_ADAPT_COARSEN for conforming grids)  */
8779566063dSJacob Faibussowitsch         PetscCall(DMForestGetMinimumRefinement(dm,&ctx.minLevel));
8789566063dSJacob Faibussowitsch         PetscCall(DMPforestGetRefinementLevel(dm,&ctx.currLevel));
8790a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) &ctx;
880792fecdfSBarry Smith         PetscCallP4est(p4est_coarsen,(pforest->forest,0,pforest_coarsen_currlevel,NULL));
8810a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) dm;
882792fecdfSBarry Smith         PetscCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL));
8830a96aa3bSJed Brown         /* we will have to change the offset after we compute the overlap */
8840a96aa3bSJed Brown         if (computeAdaptSF) {
8859566063dSJacob Faibussowitsch           PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm),pforest->forest,0,apforest->forest,apforest->cLocalStart,&coarseToPreFine,NULL));
8860a96aa3bSJed Brown         }
8870a96aa3bSJed Brown       } else if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN) { /* uniform coarsen */
8889566063dSJacob Faibussowitsch         PetscCall(DMForestGetMinimumRefinement(dm,&ctx.minLevel));
8890a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) &ctx;
890792fecdfSBarry Smith         PetscCallP4est(p4est_coarsen,(pforest->forest,0,pforest_coarsen_uniform,NULL));
8910a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) dm;
892792fecdfSBarry Smith         PetscCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL));
8930a96aa3bSJed Brown         /* we will have to change the offset after we compute the overlap */
8940a96aa3bSJed Brown         if (computeAdaptSF) {
8959566063dSJacob Faibussowitsch           PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm),pforest->forest,0,apforest->forest,apforest->cLocalStart,&coarseToPreFine,NULL));
8960a96aa3bSJed Brown         }
8970a96aa3bSJed Brown       } else if (!numValuesGlobal && defaultValue == DM_ADAPT_REFINE) { /* uniform refine */
8989566063dSJacob Faibussowitsch         PetscCall(DMForestGetMaximumRefinement(dm,&ctx.maxLevel));
8990a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) &ctx;
900792fecdfSBarry Smith         PetscCallP4est(p4est_refine,(pforest->forest,0,pforest_refine_uniform,NULL));
9010a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) dm;
902792fecdfSBarry Smith         PetscCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL));
9030a96aa3bSJed Brown         /* we will have to change the offset after we compute the overlap */
9040a96aa3bSJed Brown         if (computeAdaptSF) {
9059566063dSJacob Faibussowitsch           PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm),apforest->forest,apforest->cLocalStart,pforest->forest,0,&preCoarseToFine,NULL));
9060a96aa3bSJed Brown         }
9070a96aa3bSJed Brown       } else if (numValuesGlobal) {
9080a96aa3bSJed Brown         p4est_t                    *p4est = pforest->forest;
9090a96aa3bSJed Brown         PetscInt                   *cellFlags;
9100a96aa3bSJed Brown         DMForestAdaptivityStrategy strategy;
9110a96aa3bSJed Brown         PetscSF                    cellSF;
9120a96aa3bSJed Brown         PetscInt                   c, cStart, cEnd;
9130a96aa3bSJed Brown         PetscBool                  adaptAny;
9140a96aa3bSJed Brown 
9159566063dSJacob Faibussowitsch         PetscCall(DMForestGetMaximumRefinement(dm,&ctx.maxLevel));
9169566063dSJacob Faibussowitsch         PetscCall(DMForestGetMinimumRefinement(dm,&ctx.minLevel));
9179566063dSJacob Faibussowitsch         PetscCall(DMForestGetAdaptivityStrategy(dm,&strategy));
9189566063dSJacob Faibussowitsch         PetscCall(PetscStrncmp(strategy,"any",3,&adaptAny));
9199566063dSJacob Faibussowitsch         PetscCall(DMForestGetCellChart(adaptFrom,&cStart,&cEnd));
9209566063dSJacob Faibussowitsch         PetscCall(DMForestGetCellSF(adaptFrom,&cellSF));
9219566063dSJacob Faibussowitsch         PetscCall(PetscMalloc1(cEnd-cStart,&cellFlags));
9229566063dSJacob Faibussowitsch         for (c = cStart; c < cEnd; c++) PetscCall(DMLabelGetValue(adaptLabel,c,&cellFlags[c-cStart]));
9230a96aa3bSJed Brown         if (cellSF) {
9240a96aa3bSJed Brown           if (adaptAny) {
9259566063dSJacob Faibussowitsch             PetscCall(PetscSFReduceBegin(cellSF,MPIU_INT,cellFlags,cellFlags,MPI_MAX));
9269566063dSJacob Faibussowitsch             PetscCall(PetscSFReduceEnd(cellSF,MPIU_INT,cellFlags,cellFlags,MPI_MAX));
9270a96aa3bSJed Brown           } else {
9289566063dSJacob Faibussowitsch             PetscCall(PetscSFReduceBegin(cellSF,MPIU_INT,cellFlags,cellFlags,MPI_MIN));
9299566063dSJacob Faibussowitsch             PetscCall(PetscSFReduceEnd(cellSF,MPIU_INT,cellFlags,cellFlags,MPI_MIN));
9300a96aa3bSJed Brown           }
9310a96aa3bSJed Brown         }
9320a96aa3bSJed Brown         for (t = flt, count = cLocalStart; t <= llt; t++) {
9330a96aa3bSJed Brown           p4est_tree_t       *tree    = &(((p4est_tree_t*) p4est->trees->array)[t]);
9340a96aa3bSJed Brown           PetscInt           numQuads = (PetscInt) tree->quadrants.elem_count, i;
9350a96aa3bSJed Brown           p4est_quadrant_t   *quads   = (p4est_quadrant_t *) tree->quadrants.array;
9360a96aa3bSJed Brown 
9370a96aa3bSJed Brown           for (i = 0; i < numQuads; i++) {
9380a96aa3bSJed Brown             p4est_quadrant_t *q = &quads[i];
9390a96aa3bSJed Brown             q->p.user_int = cellFlags[count++];
9400a96aa3bSJed Brown           }
9410a96aa3bSJed Brown         }
9429566063dSJacob Faibussowitsch         PetscCall(PetscFree(cellFlags));
9430a96aa3bSJed Brown 
9440a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) &ctx;
945792fecdfSBarry Smith         if (adaptAny) PetscCallP4est(p4est_coarsen,(pforest->forest,0,pforest_coarsen_flag_any,pforest_init_determine));
946792fecdfSBarry Smith         else PetscCallP4est(p4est_coarsen,(pforest->forest,0,pforest_coarsen_flag_all,pforest_init_determine));
947792fecdfSBarry Smith         PetscCallP4est(p4est_refine,(pforest->forest,0,pforest_refine_flag,NULL));
9480a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) dm;
949792fecdfSBarry Smith         PetscCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL));
9500a96aa3bSJed Brown         if (computeAdaptSF) {
9519566063dSJacob Faibussowitsch           PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm),apforest->forest,apforest->cLocalStart,pforest->forest,0,&preCoarseToFine,&coarseToPreFine));
9520a96aa3bSJed Brown         }
9530a96aa3bSJed Brown       }
9540a96aa3bSJed Brown       for (t = flt, count = cLocalStart; t <= llt; t++) {
9550a96aa3bSJed Brown         p4est_tree_t       *atree    = &(((p4est_tree_t*) apforest->forest->trees->array)[t]);
9560a96aa3bSJed Brown         p4est_tree_t       *tree     = &(((p4est_tree_t*) pforest->forest->trees->array)[t]);
9570a96aa3bSJed Brown         PetscInt           anumQuads = (PetscInt) atree->quadrants.elem_count, i;
9580a96aa3bSJed Brown         PetscInt           numQuads  = (PetscInt) tree->quadrants.elem_count;
9590a96aa3bSJed Brown         p4est_quadrant_t   *aquads   = (p4est_quadrant_t *) atree->quadrants.array;
9600a96aa3bSJed Brown         p4est_quadrant_t   *quads    = (p4est_quadrant_t *) tree->quadrants.array;
9610a96aa3bSJed Brown 
9620a96aa3bSJed Brown         if (anumQuads != numQuads) {
9630a96aa3bSJed Brown           ctx.anyChange = PETSC_TRUE;
9640a96aa3bSJed Brown         } else {
9650a96aa3bSJed Brown           for (i = 0; i < numQuads; i++) {
9660a96aa3bSJed Brown             p4est_quadrant_t *aq = &aquads[i];
9670a96aa3bSJed Brown             p4est_quadrant_t *q  = &quads[i];
9680a96aa3bSJed Brown 
9690a96aa3bSJed Brown             if (aq->level != q->level) {
9700a96aa3bSJed Brown               ctx.anyChange = PETSC_TRUE;
9710a96aa3bSJed Brown               break;
9720a96aa3bSJed Brown             }
9730a96aa3bSJed Brown           }
9740a96aa3bSJed Brown         }
9750a96aa3bSJed Brown         if (ctx.anyChange) {
9760a96aa3bSJed Brown           break;
9770a96aa3bSJed Brown         }
9780a96aa3bSJed Brown       }
9790a96aa3bSJed Brown     }
9800a96aa3bSJed Brown     {
9810a96aa3bSJed Brown       PetscInt numLabels, l;
9820a96aa3bSJed Brown 
9839566063dSJacob Faibussowitsch       PetscCall(DMGetNumLabels(adaptFrom,&numLabels));
9840a96aa3bSJed Brown       for (l = 0; l < numLabels; l++) {
9850a96aa3bSJed Brown         PetscBool  isDepth, isCellType, isGhost, isVTK;
9860a96aa3bSJed Brown         DMLabel    label, labelNew;
9870a96aa3bSJed Brown         PetscInt   defVal;
9880a96aa3bSJed Brown         const char *name;
9890a96aa3bSJed Brown 
9909566063dSJacob Faibussowitsch         PetscCall(DMGetLabelName(adaptFrom, l, &name));
9919566063dSJacob Faibussowitsch         PetscCall(DMGetLabelByNum(adaptFrom, l, &label));
9929566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name,"depth",&isDepth));
9930a96aa3bSJed Brown         if (isDepth) continue;
9949566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name,"celltype",&isCellType));
9950a96aa3bSJed Brown         if (isCellType) continue;
9969566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name,"ghost",&isGhost));
9970a96aa3bSJed Brown         if (isGhost) continue;
9989566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(name,"vtk",&isVTK));
9990a96aa3bSJed Brown         if (isVTK) continue;
10009566063dSJacob Faibussowitsch         PetscCall(DMCreateLabel(dm,name));
10019566063dSJacob Faibussowitsch         PetscCall(DMGetLabel(dm,name,&labelNew));
10029566063dSJacob Faibussowitsch         PetscCall(DMLabelGetDefaultValue(label,&defVal));
10039566063dSJacob Faibussowitsch         PetscCall(DMLabelSetDefaultValue(labelNew,defVal));
10040a96aa3bSJed Brown       }
10050a96aa3bSJed Brown     }
10060a96aa3bSJed Brown   } else { /* initial */
10070a96aa3bSJed Brown     PetscInt initLevel, minLevel;
100866c0a4b5SToby Isaac #if defined(PETSC_HAVE_MPIUNI)
100966c0a4b5SToby Isaac     sc_MPI_Comm comm = sc_MPI_COMM_WORLD;
101066c0a4b5SToby Isaac #else
101166c0a4b5SToby Isaac     MPI_Comm comm = PetscObjectComm((PetscObject)dm);
101266c0a4b5SToby Isaac #endif
10130a96aa3bSJed Brown 
10149566063dSJacob Faibussowitsch     PetscCall(DMForestGetInitialRefinement(dm,&initLevel));
10159566063dSJacob Faibussowitsch     PetscCall(DMForestGetMinimumRefinement(dm,&minLevel));
1016792fecdfSBarry Smith     PetscCallP4estReturn(pforest->forest,p4est_new_ext,(comm,pforest->topo->conn,
10170a96aa3bSJed Brown                                                              0,           /* minimum number of quadrants per processor */
10180a96aa3bSJed Brown                                                              initLevel,   /* level of refinement */
10190a96aa3bSJed Brown                                                              1,           /* uniform refinement */
10200a96aa3bSJed Brown                                                              0,           /* we don't allocate any per quadrant data */
10210a96aa3bSJed Brown                                                              NULL,        /* there is no special quadrant initialization */
10220a96aa3bSJed Brown                                                              (void*)dm)); /* this dm is the user context */
10230a96aa3bSJed Brown 
10240a96aa3bSJed Brown     if (initLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE;
10250a96aa3bSJed Brown     if (dm->setfromoptionscalled) {
10260a96aa3bSJed Brown       PetscBool  flgPattern, flgFractal;
10270a96aa3bSJed Brown       PetscInt   corner = 0;
10280a96aa3bSJed Brown       PetscInt   corners[P4EST_CHILDREN], ncorner = P4EST_CHILDREN;
10290a96aa3bSJed Brown       PetscReal  likelihood = 1./ P4EST_DIM;
10300a96aa3bSJed Brown       PetscInt   pattern;
10310a96aa3bSJed Brown       const char *prefix;
10320a96aa3bSJed Brown 
10339566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm,&prefix));
10349566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetEList(((PetscObject)dm)->options,prefix,"-dm_p4est_refine_pattern",DMRefinePatternName,PATTERN_COUNT,&pattern,&flgPattern));
10359566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetInt(((PetscObject)dm)->options,prefix,"-dm_p4est_refine_corner",&corner,NULL));
10369566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options,prefix,"-dm_p4est_refine_fractal_corners",corners,&ncorner,&flgFractal));
10379566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options,prefix,"-dm_p4est_refine_hash_likelihood",&likelihood,NULL));
10380a96aa3bSJed Brown 
10390a96aa3bSJed Brown       if (flgPattern) {
10400a96aa3bSJed Brown         DMRefinePatternCtx *ctx;
10410a96aa3bSJed Brown         PetscInt           maxLevel;
10420a96aa3bSJed Brown 
10439566063dSJacob Faibussowitsch         PetscCall(DMForestGetMaximumRefinement(dm,&maxLevel));
10449566063dSJacob Faibussowitsch         PetscCall(PetscNewLog(dm,&ctx));
10450a96aa3bSJed Brown         ctx->maxLevel = PetscMin(maxLevel,P4EST_QMAXLEVEL);
10460a96aa3bSJed Brown         if (initLevel + ctx->maxLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE;
10470a96aa3bSJed Brown         switch (pattern) {
10480a96aa3bSJed Brown         case PATTERN_HASH:
10490a96aa3bSJed Brown           ctx->refine_fn      = DMRefinePattern_Hash;
10500a96aa3bSJed Brown           ctx->hashLikelihood = likelihood;
10510a96aa3bSJed Brown           break;
10520a96aa3bSJed Brown         case PATTERN_CORNER:
10530a96aa3bSJed Brown           ctx->corner    = corner;
10540a96aa3bSJed Brown           ctx->refine_fn = DMRefinePattern_Corner;
10550a96aa3bSJed Brown           break;
10560a96aa3bSJed Brown         case PATTERN_CENTER:
10570a96aa3bSJed Brown           ctx->refine_fn = DMRefinePattern_Center;
10580a96aa3bSJed Brown           break;
10590a96aa3bSJed Brown         case PATTERN_FRACTAL:
10600a96aa3bSJed Brown           if (flgFractal) {
10610a96aa3bSJed Brown             PetscInt i;
10620a96aa3bSJed Brown 
10630a96aa3bSJed Brown             for (i = 0; i < ncorner; i++) ctx->fractal[corners[i]] = PETSC_TRUE;
10640a96aa3bSJed Brown           } else {
10650a96aa3bSJed Brown #if !defined(P4_TO_P8)
10660a96aa3bSJed Brown             ctx->fractal[0] = ctx->fractal[1] = ctx->fractal[2] = PETSC_TRUE;
10670a96aa3bSJed Brown #else
10680a96aa3bSJed Brown             ctx->fractal[0] = ctx->fractal[3] = ctx->fractal[5] = ctx->fractal[6] = PETSC_TRUE;
10690a96aa3bSJed Brown #endif
10700a96aa3bSJed Brown           }
10710a96aa3bSJed Brown           ctx->refine_fn = DMRefinePattern_Fractal;
10720a96aa3bSJed Brown           break;
10730a96aa3bSJed Brown         default:
10740a96aa3bSJed Brown           SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Not a valid refinement pattern");
10750a96aa3bSJed Brown         }
10760a96aa3bSJed Brown 
10770a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) ctx;
1078792fecdfSBarry Smith         PetscCallP4est(p4est_refine,(pforest->forest,1,ctx->refine_fn,NULL));
1079792fecdfSBarry Smith         PetscCallP4est(p4est_balance,(pforest->forest,P4EST_CONNECT_FULL,NULL));
10809566063dSJacob Faibussowitsch         PetscCall(PetscFree(ctx));
10810a96aa3bSJed Brown         pforest->forest->user_pointer = (void*) dm;
10820a96aa3bSJed Brown       }
10830a96aa3bSJed Brown     }
10840a96aa3bSJed Brown   }
10850a96aa3bSJed Brown   if (pforest->coarsen_hierarchy) {
10860a96aa3bSJed Brown     PetscInt initLevel, currLevel, minLevel;
10870a96aa3bSJed Brown 
10889566063dSJacob Faibussowitsch     PetscCall(DMPforestGetRefinementLevel(dm,&currLevel));
10899566063dSJacob Faibussowitsch     PetscCall(DMForestGetInitialRefinement(dm,&initLevel));
10909566063dSJacob Faibussowitsch     PetscCall(DMForestGetMinimumRefinement(dm,&minLevel));
10910a96aa3bSJed Brown     if (currLevel > minLevel) {
10920a96aa3bSJed Brown       DM_Forest_pforest *coarse_pforest;
10930a96aa3bSJed Brown       DMLabel           coarsen;
10940a96aa3bSJed Brown       DM                coarseDM;
10950a96aa3bSJed Brown 
10969566063dSJacob Faibussowitsch       PetscCall(DMForestTemplate(dm,MPI_COMM_NULL,&coarseDM));
10979566063dSJacob Faibussowitsch       PetscCall(DMForestSetAdaptivityPurpose(coarseDM,DM_ADAPT_COARSEN));
10989566063dSJacob Faibussowitsch       PetscCall(DMLabelCreate(PETSC_COMM_SELF, "coarsen",&coarsen));
10999566063dSJacob Faibussowitsch       PetscCall(DMLabelSetDefaultValue(coarsen,DM_ADAPT_COARSEN));
11009566063dSJacob Faibussowitsch       PetscCall(DMForestSetAdaptivityLabel(coarseDM,coarsen));
11019566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&coarsen));
11029566063dSJacob Faibussowitsch       PetscCall(DMSetCoarseDM(dm,coarseDM));
11039566063dSJacob Faibussowitsch       PetscCall(PetscObjectDereference((PetscObject)coarseDM));
11040a96aa3bSJed Brown       initLevel = currLevel == initLevel ? initLevel - 1 : initLevel;
11059566063dSJacob Faibussowitsch       PetscCall(DMForestSetInitialRefinement(coarseDM,initLevel));
11069566063dSJacob Faibussowitsch       PetscCall(DMForestSetMinimumRefinement(coarseDM,minLevel));
11070a96aa3bSJed Brown       coarse_pforest                    = (DM_Forest_pforest*) ((DM_Forest*) coarseDM->data)->data;
11080a96aa3bSJed Brown       coarse_pforest->coarsen_hierarchy = PETSC_TRUE;
11090a96aa3bSJed Brown     }
11100a96aa3bSJed Brown   }
11110a96aa3bSJed Brown 
11120a96aa3bSJed Brown   { /* repartitioning and overlap */
11130a96aa3bSJed Brown     PetscMPIInt size, rank;
11140a96aa3bSJed Brown 
11159566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size));
11169566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank));
11170a96aa3bSJed Brown     if ((size > 1) && (pforest->partition_for_coarsening || forest->cellWeights || forest->weightCapacity != 1. || forest->weightsFactor != 1.)) {
11180a96aa3bSJed Brown       PetscBool      copyForest   = PETSC_FALSE;
11190a96aa3bSJed Brown       p4est_t        *forest_copy = NULL;
11200a96aa3bSJed Brown       p4est_gloidx_t shipped      = 0;
11210a96aa3bSJed Brown 
11220a96aa3bSJed Brown       if (preCoarseToFine || coarseToPreFine) copyForest = PETSC_TRUE;
1123792fecdfSBarry Smith       if (copyForest) PetscCallP4estReturn(forest_copy,p4est_copy,(pforest->forest,0));
11240a96aa3bSJed Brown 
11250a96aa3bSJed Brown       if (!forest->cellWeights && forest->weightCapacity == 1. && forest->weightsFactor == 1.) {
1126792fecdfSBarry Smith         PetscCallP4estReturn(shipped,p4est_partition_ext,(pforest->forest,(int)pforest->partition_for_coarsening,NULL));
11270a96aa3bSJed Brown       } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_PLIB,"Non-uniform partition cases not implemented yet");
11280a96aa3bSJed Brown       if (shipped) ctx.anyChange = PETSC_TRUE;
11290a96aa3bSJed Brown       if (forest_copy) {
11300a96aa3bSJed Brown         if (preCoarseToFine || coarseToPreFine) {
11310a96aa3bSJed Brown           PetscSF        repartSF; /* repartSF has roots in the old partition */
11320a96aa3bSJed Brown           PetscInt       pStart = -1, pEnd = -1, p;
11330a96aa3bSJed Brown           PetscInt       numRoots, numLeaves;
11340a96aa3bSJed Brown           PetscSFNode    *repartRoots;
11350a96aa3bSJed Brown           p4est_gloidx_t postStart  = pforest->forest->global_first_quadrant[rank];
11360a96aa3bSJed Brown           p4est_gloidx_t postEnd    = pforest->forest->global_first_quadrant[rank+1];
11370a96aa3bSJed Brown           p4est_gloidx_t partOffset = postStart;
11380a96aa3bSJed Brown 
11390a96aa3bSJed Brown           numRoots  = (PetscInt) (forest_copy->global_first_quadrant[rank + 1] - forest_copy->global_first_quadrant[rank]);
11400a96aa3bSJed Brown           numLeaves = (PetscInt) (postEnd - postStart);
11419566063dSJacob Faibussowitsch           PetscCall(DMPforestComputeOverlappingRanks(size,rank,pforest->forest,forest_copy,&pStart,&pEnd));
11429566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1((PetscInt) pforest->forest->local_num_quadrants,&repartRoots));
11430a96aa3bSJed Brown           for (p = pStart; p < pEnd; p++) {
11440a96aa3bSJed Brown             p4est_gloidx_t preStart = forest_copy->global_first_quadrant[p];
11450a96aa3bSJed Brown             p4est_gloidx_t preEnd   = forest_copy->global_first_quadrant[p+1];
11460a96aa3bSJed Brown             PetscInt       q;
11470a96aa3bSJed Brown 
11480a96aa3bSJed Brown             if (preEnd == preStart) continue;
114908401ef6SPierre Jolivet             PetscCheck(preStart <= postStart,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Bad partition overlap computation");
11500a96aa3bSJed Brown             preEnd = preEnd > postEnd ? postEnd : preEnd;
11510a96aa3bSJed Brown             for (q = partOffset; q < preEnd; q++) {
11520a96aa3bSJed Brown               repartRoots[q - postStart].rank  = p;
11530a96aa3bSJed Brown               repartRoots[q - postStart].index = partOffset - preStart;
11540a96aa3bSJed Brown             }
11550a96aa3bSJed Brown             partOffset = preEnd;
11560a96aa3bSJed Brown           }
11579566063dSJacob Faibussowitsch           PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm),&repartSF));
11589566063dSJacob Faibussowitsch           PetscCall(PetscSFSetGraph(repartSF,numRoots,numLeaves,NULL,PETSC_OWN_POINTER,repartRoots,PETSC_OWN_POINTER));
11599566063dSJacob Faibussowitsch           PetscCall(PetscSFSetUp(repartSF));
11600a96aa3bSJed Brown           if (preCoarseToFine) {
11610a96aa3bSJed Brown             PetscSF        repartSFembed, preCoarseToFineNew;
11620a96aa3bSJed Brown             PetscInt       nleaves;
11630a96aa3bSJed Brown             const PetscInt *leaves;
11640a96aa3bSJed Brown 
11659566063dSJacob Faibussowitsch             PetscCall(PetscSFSetUp(preCoarseToFine));
11669566063dSJacob Faibussowitsch             PetscCall(PetscSFGetGraph(preCoarseToFine,NULL,&nleaves,&leaves,NULL));
11670a96aa3bSJed Brown             if (leaves) {
11689566063dSJacob Faibussowitsch               PetscCall(PetscSFCreateEmbeddedRootSF(repartSF,nleaves,leaves,&repartSFembed));
11690a96aa3bSJed Brown             } else {
11700a96aa3bSJed Brown               repartSFembed = repartSF;
11719566063dSJacob Faibussowitsch               PetscCall(PetscObjectReference((PetscObject)repartSFembed));
11720a96aa3bSJed Brown             }
11739566063dSJacob Faibussowitsch             PetscCall(PetscSFCompose(preCoarseToFine,repartSFembed,&preCoarseToFineNew));
11749566063dSJacob Faibussowitsch             PetscCall(PetscSFDestroy(&preCoarseToFine));
11759566063dSJacob Faibussowitsch             PetscCall(PetscSFDestroy(&repartSFembed));
11760a96aa3bSJed Brown             preCoarseToFine = preCoarseToFineNew;
11770a96aa3bSJed Brown           }
11780a96aa3bSJed Brown           if (coarseToPreFine) {
11790a96aa3bSJed Brown             PetscSF repartSFinv, coarseToPreFineNew;
11800a96aa3bSJed Brown 
11819566063dSJacob Faibussowitsch             PetscCall(PetscSFCreateInverseSF(repartSF,&repartSFinv));
11829566063dSJacob Faibussowitsch             PetscCall(PetscSFCompose(repartSFinv,coarseToPreFine,&coarseToPreFineNew));
11839566063dSJacob Faibussowitsch             PetscCall(PetscSFDestroy(&coarseToPreFine));
11849566063dSJacob Faibussowitsch             PetscCall(PetscSFDestroy(&repartSFinv));
11850a96aa3bSJed Brown             coarseToPreFine = coarseToPreFineNew;
11860a96aa3bSJed Brown           }
11879566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&repartSF));
11880a96aa3bSJed Brown         }
1189792fecdfSBarry Smith         PetscCallP4est(p4est_destroy,(forest_copy));
11900a96aa3bSJed Brown       }
11910a96aa3bSJed Brown     }
11920a96aa3bSJed Brown     if (size > 1) {
11930a96aa3bSJed Brown       PetscInt overlap;
11940a96aa3bSJed Brown 
11959566063dSJacob Faibussowitsch       PetscCall(DMForestGetPartitionOverlap(dm,&overlap));
11960a96aa3bSJed Brown 
11970a96aa3bSJed Brown       if (adaptFrom) {
11980a96aa3bSJed Brown         PetscInt aoverlap;
11990a96aa3bSJed Brown 
12009566063dSJacob Faibussowitsch         PetscCall(DMForestGetPartitionOverlap(adaptFrom,&aoverlap));
12010a96aa3bSJed Brown         if (aoverlap != overlap) {
12020a96aa3bSJed Brown           ctx.anyChange = PETSC_TRUE;
12030a96aa3bSJed Brown         }
12040a96aa3bSJed Brown       }
12050a96aa3bSJed Brown 
12060a96aa3bSJed Brown       if (overlap > 0) {
12070a96aa3bSJed Brown         PetscInt i, cLocalStart;
12080a96aa3bSJed Brown         PetscInt cEnd;
12090a96aa3bSJed Brown         PetscSF  preCellSF = NULL, cellSF = NULL;
12100a96aa3bSJed Brown 
1211792fecdfSBarry Smith         PetscCallP4estReturn(pforest->ghost,p4est_ghost_new,(pforest->forest,P4EST_CONNECT_FULL));
1212792fecdfSBarry Smith         PetscCallP4estReturn(pforest->lnodes,p4est_lnodes_new,(pforest->forest,pforest->ghost,-P4EST_DIM));
1213792fecdfSBarry Smith         PetscCallP4est(p4est_ghost_support_lnodes,(pforest->forest,pforest->lnodes,pforest->ghost));
1214792fecdfSBarry Smith         for (i = 1; i < overlap; i++) PetscCallP4est(p4est_ghost_expand_by_lnodes,(pforest->forest,pforest->lnodes,pforest->ghost));
12150a96aa3bSJed Brown 
12160a96aa3bSJed Brown         cLocalStart = pforest->cLocalStart = pforest->ghost->proc_offsets[rank];
12170a96aa3bSJed Brown         cEnd        = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[size];
12180a96aa3bSJed Brown 
12190a96aa3bSJed Brown         /* shift sfs by cLocalStart, expand by cell SFs */
12200a96aa3bSJed Brown         if (preCoarseToFine || coarseToPreFine) {
12219566063dSJacob Faibussowitsch           if (adaptFrom) PetscCall(DMForestGetCellSF(adaptFrom,&preCellSF));
12220a96aa3bSJed Brown           dm->setupcalled = PETSC_TRUE;
12239566063dSJacob Faibussowitsch           PetscCall(DMForestGetCellSF(dm,&cellSF));
12240a96aa3bSJed Brown         }
12250a96aa3bSJed Brown         if (preCoarseToFine) {
12260a96aa3bSJed Brown           PetscSF           preCoarseToFineNew;
12270a96aa3bSJed Brown           PetscInt          nleaves, nroots, *leavesNew, i, nleavesNew;
12280a96aa3bSJed Brown           const PetscInt    *leaves;
12290a96aa3bSJed Brown           const PetscSFNode *remotes;
12300a96aa3bSJed Brown           PetscSFNode       *remotesAll;
12310a96aa3bSJed Brown 
12329566063dSJacob Faibussowitsch           PetscCall(PetscSFSetUp(preCoarseToFine));
12339566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(preCoarseToFine,&nroots,&nleaves,&leaves,&remotes));
12349566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(cEnd,&remotesAll));
12350a96aa3bSJed Brown           for (i = 0; i < cEnd; i++) {
12360a96aa3bSJed Brown             remotesAll[i].rank  = -1;
12370a96aa3bSJed Brown             remotesAll[i].index = -1;
12380a96aa3bSJed Brown           }
12390a96aa3bSJed Brown           for (i = 0; i < nleaves; i++) remotesAll[(leaves ? leaves[i] : i) + cLocalStart] = remotes[i];
12409566063dSJacob Faibussowitsch           PetscCall(PetscSFSetUp(cellSF));
12419566063dSJacob Faibussowitsch           PetscCall(PetscSFBcastBegin(cellSF,MPIU_2INT,remotesAll,remotesAll,MPI_REPLACE));
12429566063dSJacob Faibussowitsch           PetscCall(PetscSFBcastEnd(cellSF,MPIU_2INT,remotesAll,remotesAll,MPI_REPLACE));
12430a96aa3bSJed Brown           nleavesNew = 0;
12440a96aa3bSJed Brown           for (i = 0; i < nleaves; i++) {
12450a96aa3bSJed Brown             if (remotesAll[i].rank >= 0) nleavesNew++;
12460a96aa3bSJed Brown           }
12479566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nleavesNew,&leavesNew));
12480a96aa3bSJed Brown           nleavesNew = 0;
12490a96aa3bSJed Brown           for (i = 0; i < nleaves; i++) {
12500a96aa3bSJed Brown             if (remotesAll[i].rank >= 0) {
12510a96aa3bSJed Brown               leavesNew[nleavesNew] = i;
12520a96aa3bSJed Brown               if (i > nleavesNew) remotesAll[nleavesNew] = remotesAll[i];
12530a96aa3bSJed Brown               nleavesNew++;
12540a96aa3bSJed Brown             }
12550a96aa3bSJed Brown           }
12569566063dSJacob Faibussowitsch           PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm),&preCoarseToFineNew));
12570a96aa3bSJed Brown           if (nleavesNew < cEnd) {
12589566063dSJacob Faibussowitsch             PetscCall(PetscSFSetGraph(preCoarseToFineNew,nroots,nleavesNew,leavesNew,PETSC_OWN_POINTER,remotesAll,PETSC_COPY_VALUES));
12590a96aa3bSJed Brown           } else { /* all cells are leaves */
12609566063dSJacob Faibussowitsch             PetscCall(PetscFree(leavesNew));
12619566063dSJacob Faibussowitsch             PetscCall(PetscSFSetGraph(preCoarseToFineNew,nroots,nleavesNew,NULL,PETSC_OWN_POINTER,remotesAll,PETSC_COPY_VALUES));
12620a96aa3bSJed Brown           }
12639566063dSJacob Faibussowitsch           PetscCall(PetscFree(remotesAll));
12649566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&preCoarseToFine));
12650a96aa3bSJed Brown           preCoarseToFine = preCoarseToFineNew;
12660a96aa3bSJed Brown           preCoarseToFine = preCoarseToFineNew;
12670a96aa3bSJed Brown         }
12680a96aa3bSJed Brown         if (coarseToPreFine) {
12690a96aa3bSJed Brown           PetscSF           coarseToPreFineNew;
12700a96aa3bSJed Brown           PetscInt          nleaves, nroots, i, nleavesCellSF, nleavesExpanded, *leavesNew;
12710a96aa3bSJed Brown           const PetscInt    *leaves;
12720a96aa3bSJed Brown           const PetscSFNode *remotes;
12730a96aa3bSJed Brown           PetscSFNode       *remotesNew, *remotesNewRoot, *remotesExpanded;
12740a96aa3bSJed Brown 
12759566063dSJacob Faibussowitsch           PetscCall(PetscSFSetUp(coarseToPreFine));
12769566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseToPreFine,&nroots,&nleaves,&leaves,&remotes));
12779566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(preCellSF,NULL,&nleavesCellSF,NULL,NULL));
12789566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nroots,&remotesNewRoot));
12799566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nleaves,&remotesNew));
12800a96aa3bSJed Brown           for (i = 0; i < nroots; i++) {
12810a96aa3bSJed Brown             remotesNewRoot[i].rank  = rank;
12820a96aa3bSJed Brown             remotesNewRoot[i].index = i + cLocalStart;
12830a96aa3bSJed Brown           }
12849566063dSJacob Faibussowitsch           PetscCall(PetscSFBcastBegin(coarseToPreFine,MPIU_2INT,remotesNewRoot,remotesNew,MPI_REPLACE));
12859566063dSJacob Faibussowitsch           PetscCall(PetscSFBcastEnd(coarseToPreFine,MPIU_2INT,remotesNewRoot,remotesNew,MPI_REPLACE));
12869566063dSJacob Faibussowitsch           PetscCall(PetscFree(remotesNewRoot));
12879566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nleavesCellSF,&remotesExpanded));
12880a96aa3bSJed Brown           for (i = 0; i < nleavesCellSF; i++) {
12890a96aa3bSJed Brown             remotesExpanded[i].rank  = -1;
12900a96aa3bSJed Brown             remotesExpanded[i].index = -1;
12910a96aa3bSJed Brown           }
12920a96aa3bSJed Brown           for (i = 0; i < nleaves; i++) remotesExpanded[leaves ? leaves[i] : i] = remotesNew[i];
12939566063dSJacob Faibussowitsch           PetscCall(PetscFree(remotesNew));
12949566063dSJacob Faibussowitsch           PetscCall(PetscSFBcastBegin(preCellSF,MPIU_2INT,remotesExpanded,remotesExpanded,MPI_REPLACE));
12959566063dSJacob Faibussowitsch           PetscCall(PetscSFBcastEnd(preCellSF,MPIU_2INT,remotesExpanded,remotesExpanded,MPI_REPLACE));
12960a96aa3bSJed Brown 
12970a96aa3bSJed Brown           nleavesExpanded = 0;
12980a96aa3bSJed Brown           for (i = 0; i < nleavesCellSF; i++) {
12990a96aa3bSJed Brown             if (remotesExpanded[i].rank >= 0) nleavesExpanded++;
13000a96aa3bSJed Brown           }
13019566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(nleavesExpanded,&leavesNew));
13020a96aa3bSJed Brown           nleavesExpanded = 0;
13030a96aa3bSJed Brown           for (i = 0; i < nleavesCellSF; i++) {
13040a96aa3bSJed Brown             if (remotesExpanded[i].rank >= 0) {
13050a96aa3bSJed Brown               leavesNew[nleavesExpanded] = i;
13060a96aa3bSJed Brown               if (i > nleavesExpanded) remotesExpanded[nleavesExpanded] = remotes[i];
13070a96aa3bSJed Brown               nleavesExpanded++;
13080a96aa3bSJed Brown             }
13090a96aa3bSJed Brown           }
13109566063dSJacob Faibussowitsch           PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm),&coarseToPreFineNew));
13110a96aa3bSJed Brown           if (nleavesExpanded < nleavesCellSF) {
13129566063dSJacob Faibussowitsch             PetscCall(PetscSFSetGraph(coarseToPreFineNew,cEnd,nleavesExpanded,leavesNew,PETSC_OWN_POINTER,remotesExpanded,PETSC_COPY_VALUES));
13130a96aa3bSJed Brown           } else {
13149566063dSJacob Faibussowitsch             PetscCall(PetscFree(leavesNew));
13159566063dSJacob Faibussowitsch             PetscCall(PetscSFSetGraph(coarseToPreFineNew,cEnd,nleavesExpanded,NULL,PETSC_OWN_POINTER,remotesExpanded,PETSC_COPY_VALUES));
13160a96aa3bSJed Brown           }
13179566063dSJacob Faibussowitsch           PetscCall(PetscFree(remotesExpanded));
13189566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseToPreFine));
13190a96aa3bSJed Brown           coarseToPreFine = coarseToPreFineNew;
13200a96aa3bSJed Brown         }
13210a96aa3bSJed Brown       }
13220a96aa3bSJed Brown     }
13230a96aa3bSJed Brown   }
13240a96aa3bSJed Brown   forest->preCoarseToFine = preCoarseToFine;
13250a96aa3bSJed Brown   forest->coarseToPreFine = coarseToPreFine;
13260a96aa3bSJed Brown   dm->setupcalled         = PETSC_TRUE;
13279566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&ctx.anyChange,&(pforest->adaptivitySuccess),1,MPIU_BOOL,MPI_LOR,PetscObjectComm((PetscObject)dm)));
13289566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,NULL));
13290a96aa3bSJed Brown   PetscFunctionReturn(0);
13300a96aa3bSJed Brown }
13310a96aa3bSJed Brown 
13320a96aa3bSJed Brown #define DMForestGetAdaptivitySuccess_pforest _append_pforest(DMForestGetAdaptivitySuccess)
13330a96aa3bSJed Brown static PetscErrorCode DMForestGetAdaptivitySuccess_pforest(DM dm, PetscBool *success)
13340a96aa3bSJed Brown {
13350a96aa3bSJed Brown   DM_Forest         *forest;
13360a96aa3bSJed Brown   DM_Forest_pforest *pforest;
13370a96aa3bSJed Brown 
13380a96aa3bSJed Brown   PetscFunctionBegin;
13390a96aa3bSJed Brown   forest   = (DM_Forest *) dm->data;
13400a96aa3bSJed Brown   pforest  = (DM_Forest_pforest *) forest->data;
13410a96aa3bSJed Brown   *success = pforest->adaptivitySuccess;
13420a96aa3bSJed Brown   PetscFunctionReturn(0);
13430a96aa3bSJed Brown }
13440a96aa3bSJed Brown 
13450a96aa3bSJed Brown #define DMView_ASCII_pforest _append_pforest(DMView_ASCII)
13460a96aa3bSJed Brown static PetscErrorCode DMView_ASCII_pforest(PetscObject odm, PetscViewer viewer)
13470a96aa3bSJed Brown {
13480a96aa3bSJed Brown   DM             dm = (DM) odm;
13490a96aa3bSJed Brown 
13500a96aa3bSJed Brown   PetscFunctionBegin;
13510a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13520a96aa3bSJed Brown   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
13539566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
13540a96aa3bSJed Brown   switch (viewer->format) {
13550a96aa3bSJed Brown   case PETSC_VIEWER_DEFAULT:
13560a96aa3bSJed Brown   case PETSC_VIEWER_ASCII_INFO:
13570a96aa3bSJed Brown   {
13580a96aa3bSJed Brown     PetscInt   dim;
13590a96aa3bSJed Brown     const char *name;
13600a96aa3bSJed Brown 
13619566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject) dm, &name));
13629566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(dm, &dim));
136363a3b9bcSJacob Faibussowitsch     if (name) PetscCall(PetscViewerASCIIPrintf(viewer, "Forest %s in %" PetscInt_FMT " dimensions:\n", name, dim));
136463a3b9bcSJacob Faibussowitsch     else      PetscCall(PetscViewerASCIIPrintf(viewer, "Forest in %" PetscInt_FMT " dimensions:\n", dim));
13650a96aa3bSJed Brown   }
13660a96aa3bSJed Brown   case PETSC_VIEWER_ASCII_INFO_DETAIL:
13670a96aa3bSJed Brown   case PETSC_VIEWER_LOAD_BALANCE:
13680a96aa3bSJed Brown   {
13690a96aa3bSJed Brown     DM plex;
13700a96aa3bSJed Brown 
13719566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dm, &plex));
13729566063dSJacob Faibussowitsch     PetscCall(DMView(plex, viewer));
13730a96aa3bSJed Brown   }
13740a96aa3bSJed Brown   break;
137598921bdaSJacob Faibussowitsch   default: SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]);
13760a96aa3bSJed Brown   }
13770a96aa3bSJed Brown   PetscFunctionReturn(0);
13780a96aa3bSJed Brown }
13790a96aa3bSJed Brown 
13800a96aa3bSJed Brown #define DMView_VTK_pforest _append_pforest(DMView_VTK)
13810a96aa3bSJed Brown static PetscErrorCode DMView_VTK_pforest(PetscObject odm, PetscViewer viewer)
13820a96aa3bSJed Brown {
13830a96aa3bSJed Brown   DM                dm       = (DM) odm;
13840a96aa3bSJed Brown   DM_Forest         *forest  = (DM_Forest*) dm->data;
13850a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data;
13860a96aa3bSJed Brown   PetscBool         isvtk;
13870a96aa3bSJed Brown   PetscReal         vtkScale = 1. - PETSC_MACHINE_EPSILON;
13880a96aa3bSJed Brown   PetscViewer_VTK   *vtk     = (PetscViewer_VTK*)viewer->data;
13890a96aa3bSJed Brown   const char        *name;
13900a96aa3bSJed Brown   char              *filenameStrip = NULL;
13910a96aa3bSJed Brown   PetscBool         hasExt;
13920a96aa3bSJed Brown   size_t            len;
13930a96aa3bSJed Brown   p4est_geometry_t  *geom;
13940a96aa3bSJed Brown 
13950a96aa3bSJed Brown   PetscFunctionBegin;
13960a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13970a96aa3bSJed Brown   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
13989566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
13990a96aa3bSJed Brown   geom = pforest->topo->geom;
14009566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk));
140128b400f6SJacob Faibussowitsch   PetscCheck(isvtk,PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Cannot use viewer type %s", ((PetscObject)viewer)->type_name);
14020a96aa3bSJed Brown   switch (viewer->format) {
14030a96aa3bSJed Brown   case PETSC_VIEWER_VTK_VTU:
140428b400f6SJacob Faibussowitsch     PetscCheck(pforest->forest,PetscObjectComm(odm),PETSC_ERR_ARG_WRONG,"DM has not been setup with a valid forest");
14050a96aa3bSJed Brown     name = vtk->filename;
14069566063dSJacob Faibussowitsch     PetscCall(PetscStrlen(name,&len));
14079566063dSJacob Faibussowitsch     PetscCall(PetscStrcasecmp(name+len-4,".vtu",&hasExt));
14080a96aa3bSJed Brown     if (hasExt) {
14099566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(name,&filenameStrip));
14100a96aa3bSJed Brown       filenameStrip[len-4]='\0';
14110a96aa3bSJed Brown       name                = filenameStrip;
14120a96aa3bSJed Brown     }
1413792fecdfSBarry Smith     if (!pforest->topo->geom) PetscCallP4estReturn(geom,p4est_geometry_new_connectivity,(pforest->topo->conn));
14140a96aa3bSJed Brown     {
14150a96aa3bSJed Brown       p4est_vtk_context_t *pvtk;
14160a96aa3bSJed Brown       int                 footerr;
14170a96aa3bSJed Brown 
1418792fecdfSBarry Smith       PetscCallP4estReturn(pvtk,p4est_vtk_context_new,(pforest->forest,name));
1419792fecdfSBarry Smith       PetscCallP4est(p4est_vtk_context_set_geom,(pvtk,geom));
1420792fecdfSBarry Smith       PetscCallP4est(p4est_vtk_context_set_scale,(pvtk,(double)vtkScale));
1421792fecdfSBarry Smith       PetscCallP4estReturn(pvtk,p4est_vtk_write_header,(pvtk));
142228b400f6SJacob Faibussowitsch       PetscCheck(pvtk,PetscObjectComm((PetscObject)odm),PETSC_ERR_LIB,P4EST_STRING "_vtk_write_header() failed");
1423792fecdfSBarry Smith       PetscCallP4estReturn(pvtk,p4est_vtk_write_cell_dataf,(pvtk,
14240a96aa3bSJed Brown                                                                  1, /* write tree */
14250a96aa3bSJed Brown                                                                  1, /* write level */
14260a96aa3bSJed Brown                                                                  1, /* write rank */
14270a96aa3bSJed Brown                                                                  0, /* do not wrap rank */
14280a96aa3bSJed Brown                                                                  0, /* no scalar fields */
14290a96aa3bSJed Brown                                                                  0, /* no vector fields */
14300a96aa3bSJed Brown                                                                  pvtk));
143128b400f6SJacob Faibussowitsch       PetscCheck(pvtk,PetscObjectComm((PetscObject)odm),PETSC_ERR_LIB,P4EST_STRING "_vtk_write_cell_dataf() failed");
1432792fecdfSBarry Smith       PetscCallP4estReturn(footerr,p4est_vtk_write_footer,(pvtk));
143328b400f6SJacob Faibussowitsch       PetscCheck(!footerr,PetscObjectComm((PetscObject)odm),PETSC_ERR_LIB,P4EST_STRING "_vtk_write_footer() failed");
14340a96aa3bSJed Brown     }
1435792fecdfSBarry Smith     if (!pforest->topo->geom) PetscCallP4est(p4est_geometry_destroy,(geom));
14369566063dSJacob Faibussowitsch     PetscCall(PetscFree(filenameStrip));
14370a96aa3bSJed Brown     break;
143898921bdaSJacob Faibussowitsch   default: SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]);
14390a96aa3bSJed Brown   }
14400a96aa3bSJed Brown   PetscFunctionReturn(0);
14410a96aa3bSJed Brown }
14420a96aa3bSJed Brown 
14430a96aa3bSJed Brown #define DMView_HDF5_pforest _append_pforest(DMView_HDF5)
14440a96aa3bSJed Brown static PetscErrorCode DMView_HDF5_pforest(DM dm, PetscViewer viewer)
14450a96aa3bSJed Brown {
14460a96aa3bSJed Brown   DM             plex;
14470a96aa3bSJed Brown 
14480a96aa3bSJed Brown   PetscFunctionBegin;
14499566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
14509566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
14519566063dSJacob Faibussowitsch   PetscCall(DMView(plex, viewer));
14520a96aa3bSJed Brown   PetscFunctionReturn(0);
14530a96aa3bSJed Brown }
14540a96aa3bSJed Brown 
14550a96aa3bSJed Brown #define DMView_GLVis_pforest _append_pforest(DMView_GLVis)
14560a96aa3bSJed Brown static PetscErrorCode DMView_GLVis_pforest(DM dm, PetscViewer viewer)
14570a96aa3bSJed Brown {
14580a96aa3bSJed Brown   DM             plex;
14590a96aa3bSJed Brown 
14600a96aa3bSJed Brown   PetscFunctionBegin;
14619566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
14629566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm, &plex));
14639566063dSJacob Faibussowitsch   PetscCall(DMView(plex, viewer));
14640a96aa3bSJed Brown   PetscFunctionReturn(0);
14650a96aa3bSJed Brown }
14660a96aa3bSJed Brown 
14670a96aa3bSJed Brown #define DMView_pforest _append_pforest(DMView)
14680a96aa3bSJed Brown static PetscErrorCode DMView_pforest(DM dm, PetscViewer viewer)
14690a96aa3bSJed Brown {
14700a96aa3bSJed Brown   PetscBool      isascii, isvtk, ishdf5, isglvis;
14710a96aa3bSJed Brown 
14720a96aa3bSJed Brown   PetscFunctionBegin;
14730a96aa3bSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14740a96aa3bSJed Brown   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
14759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERASCII, &isascii));
14769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK,   &isvtk));
14779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5,  &ishdf5));
14789566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERGLVIS, &isglvis));
14790a96aa3bSJed Brown   if (isascii) {
14809566063dSJacob Faibussowitsch     PetscCall(DMView_ASCII_pforest((PetscObject) dm,viewer));
14810a96aa3bSJed Brown   } else if (isvtk) {
14829566063dSJacob Faibussowitsch     PetscCall(DMView_VTK_pforest((PetscObject) dm,viewer));
14830a96aa3bSJed Brown   } else if (ishdf5) {
14849566063dSJacob Faibussowitsch     PetscCall(DMView_HDF5_pforest(dm, viewer));
14850a96aa3bSJed Brown   } else if (isglvis) {
14869566063dSJacob Faibussowitsch     PetscCall(DMView_GLVis_pforest(dm, viewer));
14870a96aa3bSJed Brown   } else SETERRQ(PetscObjectComm((PetscObject) dm),PETSC_ERR_SUP,"Viewer not supported (not VTK, HDF5, or GLVis)");
14880a96aa3bSJed Brown   PetscFunctionReturn(0);
14890a96aa3bSJed Brown }
14900a96aa3bSJed Brown 
14910a96aa3bSJed Brown static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t *conn, PetscInt **tree_face_to_uniq)
14920a96aa3bSJed Brown {
14930a96aa3bSJed Brown   PetscInt       *ttf, f, t, g, count;
14940a96aa3bSJed Brown   PetscInt       numFacets;
14950a96aa3bSJed Brown 
14960a96aa3bSJed Brown   PetscFunctionBegin;
14970a96aa3bSJed Brown   numFacets = conn->num_trees * P4EST_FACES;
14989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFacets,&ttf));
14990a96aa3bSJed Brown   for (f = 0; f < numFacets; f++) ttf[f] = -1;
15000a96aa3bSJed Brown   for (g = 0, count = 0, t = 0; t < conn->num_trees; t++) {
15010a96aa3bSJed Brown     for (f = 0; f < P4EST_FACES; f++, g++) {
15020a96aa3bSJed Brown       if (ttf[g] == -1) {
15030a96aa3bSJed Brown         PetscInt ng;
15040a96aa3bSJed Brown 
15050a96aa3bSJed Brown         ttf[g]  = count++;
15060a96aa3bSJed Brown         ng      = conn->tree_to_tree[g] * P4EST_FACES + (conn->tree_to_face[g] % P4EST_FACES);
15070a96aa3bSJed Brown         ttf[ng] = ttf[g];
15080a96aa3bSJed Brown       }
15090a96aa3bSJed Brown     }
15100a96aa3bSJed Brown   }
15110a96aa3bSJed Brown   *tree_face_to_uniq = ttf;
15120a96aa3bSJed Brown   PetscFunctionReturn(0);
15130a96aa3bSJed Brown }
15140a96aa3bSJed Brown 
15150a96aa3bSJed Brown static PetscErrorCode DMPlexCreateConnectivity_pforest(DM dm, p4est_connectivity_t **connOut, PetscInt **tree_face_to_uniq)
15160a96aa3bSJed Brown {
15170a96aa3bSJed Brown   p4est_topidx_t       numTrees, numVerts, numCorns, numCtt;
15180a96aa3bSJed Brown   PetscSection         ctt;
15190a96aa3bSJed Brown #if defined(P4_TO_P8)
15200a96aa3bSJed Brown   p4est_topidx_t       numEdges, numEtt;
15210a96aa3bSJed Brown   PetscSection         ett;
15220a96aa3bSJed Brown   PetscInt             eStart, eEnd, e, ettSize;
15230a96aa3bSJed Brown   PetscInt             vertOff = 1 + P4EST_FACES + P8EST_EDGES;
15240a96aa3bSJed Brown   PetscInt             edgeOff = 1 + P4EST_FACES;
15250a96aa3bSJed Brown #else
15260a96aa3bSJed Brown   PetscInt             vertOff = 1 + P4EST_FACES;
15270a96aa3bSJed Brown #endif
15280a96aa3bSJed Brown   p4est_connectivity_t *conn;
15290a96aa3bSJed Brown   PetscInt             cStart, cEnd, c, vStart, vEnd, v, fStart, fEnd, f;
15300a96aa3bSJed Brown   PetscInt             *star = NULL, *closure = NULL, closureSize, starSize, cttSize;
15310a96aa3bSJed Brown   PetscInt             *ttf;
15320a96aa3bSJed Brown 
15330a96aa3bSJed Brown   PetscFunctionBegin;
15340a96aa3bSJed Brown   /* 1: count objects, allocate */
15359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm,0,&cStart,&cEnd));
15369566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(cEnd-cStart,&numTrees));
15370a96aa3bSJed Brown   numVerts = P4EST_CHILDREN * numTrees;
15389566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm,0,&vStart,&vEnd));
15399566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(vEnd-vStart,&numCorns));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF,&ctt));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ctt,vStart,vEnd));
15420a96aa3bSJed Brown   for (v = vStart; v < vEnd; v++) {
15430a96aa3bSJed Brown     PetscInt s;
15440a96aa3bSJed Brown 
15459566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm,v,PETSC_FALSE,&starSize,&star));
15460a96aa3bSJed Brown     for (s = 0; s < starSize; s++) {
15470a96aa3bSJed Brown       PetscInt p = star[2*s];
15480a96aa3bSJed Brown 
15490a96aa3bSJed Brown       if (p >= cStart && p < cEnd) {
15500a96aa3bSJed Brown         /* we want to count every time cell p references v, so we see how many times it comes up in the closure.  This
15510a96aa3bSJed Brown          * only protects against periodicity problems */
15529566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure));
155363a3b9bcSJacob Faibussowitsch         PetscCheck(closureSize == P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Cell %" PetscInt_FMT " with wrong closure size %" PetscInt_FMT " != %d", p, closureSize, P4EST_INSUL);
15540a96aa3bSJed Brown         for (c = 0; c < P4EST_CHILDREN; c++) {
15550a96aa3bSJed Brown           PetscInt cellVert = closure[2 * (c + vertOff)];
15560a96aa3bSJed Brown 
15571dca8a05SBarry Smith           PetscCheck(cellVert >= vStart && cellVert < vEnd,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Non-standard closure: vertices");
15580a96aa3bSJed Brown           if (cellVert == v) {
15599566063dSJacob Faibussowitsch             PetscCall(PetscSectionAddDof(ctt,v,1));
15600a96aa3bSJed Brown           }
15610a96aa3bSJed Brown         }
15629566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure));
15630a96aa3bSJed Brown       }
15640a96aa3bSJed Brown     }
15659566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm,v,PETSC_FALSE,&starSize,&star));
15660a96aa3bSJed Brown   }
15679566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ctt));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(ctt,&cttSize));
15699566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(cttSize,&numCtt));
15700a96aa3bSJed Brown #if defined(P4_TO_P8)
15719566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm,P4EST_DIM-1,&eStart,&eEnd));
15729566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(eEnd-eStart,&numEdges));
15739566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF,&ett));
15749566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ett,eStart,eEnd));
15750a96aa3bSJed Brown   for (e = eStart; e < eEnd; e++) {
15760a96aa3bSJed Brown     PetscInt s;
15770a96aa3bSJed Brown 
15789566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm,e,PETSC_FALSE,&starSize,&star));
15790a96aa3bSJed Brown     for (s = 0; s < starSize; s++) {
15800a96aa3bSJed Brown       PetscInt p = star[2*s];
15810a96aa3bSJed Brown 
15820a96aa3bSJed Brown       if (p >= cStart && p < cEnd) {
15830a96aa3bSJed Brown         /* we want to count every time cell p references e, so we see how many times it comes up in the closure.  This
15840a96aa3bSJed Brown          * only protects against periodicity problems */
15859566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure));
158608401ef6SPierre Jolivet         PetscCheck(closureSize == P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Cell with wrong closure size");
15870a96aa3bSJed Brown         for (c = 0; c < P8EST_EDGES; c++) {
15880a96aa3bSJed Brown           PetscInt cellEdge = closure[2 * (c + edgeOff)];
15890a96aa3bSJed Brown 
15901dca8a05SBarry Smith           PetscCheck(cellEdge >= eStart && cellEdge < eEnd,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Non-standard closure: edges");
15910a96aa3bSJed Brown           if (cellEdge == e) {
15929566063dSJacob Faibussowitsch             PetscCall(PetscSectionAddDof(ett,e,1));
15930a96aa3bSJed Brown           }
15940a96aa3bSJed Brown         }
15959566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure));
15960a96aa3bSJed Brown       }
15970a96aa3bSJed Brown     }
15989566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm,e,PETSC_FALSE,&starSize,&star));
15990a96aa3bSJed Brown   }
16009566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ett));
16019566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(ett,&ettSize));
16029566063dSJacob Faibussowitsch   PetscCall(P4estTopidxCast(ettSize,&numEtt));
16030a96aa3bSJed Brown 
16040a96aa3bSJed Brown   /* This routine allocates space for the arrays, which we fill below */
1605792fecdfSBarry Smith   PetscCallP4estReturn(conn,p8est_connectivity_new,(numVerts,numTrees,numEdges,numEtt,numCorns,numCtt));
16060a96aa3bSJed Brown #else
1607792fecdfSBarry Smith   PetscCallP4estReturn(conn,p4est_connectivity_new,(numVerts,numTrees,numCorns,numCtt));
16080a96aa3bSJed Brown #endif
16090a96aa3bSJed Brown 
16100a96aa3bSJed Brown   /* 2: visit every face, determine neighboring cells(trees) */
16119566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm,1,&fStart,&fEnd));
16129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1((cEnd-cStart) * P4EST_FACES,&ttf));
16130a96aa3bSJed Brown   for (f = fStart; f < fEnd; f++) {
16140a96aa3bSJed Brown     PetscInt       numSupp, s;
16150a96aa3bSJed Brown     PetscInt       myFace[2] = {-1, -1};
16160a96aa3bSJed Brown     PetscInt       myOrnt[2] = {PETSC_MIN_INT, PETSC_MIN_INT};
16170a96aa3bSJed Brown     const PetscInt *supp;
16180a96aa3bSJed Brown 
16199566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, f, &numSupp));
16201dca8a05SBarry Smith     PetscCheck(numSupp == 1 || numSupp == 2,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"point %" PetscInt_FMT " has facet with %" PetscInt_FMT " sides: must be 1 or 2 (boundary or conformal)",f,numSupp);
16219566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, f, &supp));
16220a96aa3bSJed Brown 
16230a96aa3bSJed Brown     for (s = 0; s < numSupp; s++) {
16240a96aa3bSJed Brown       PetscInt p = supp[s];
16250a96aa3bSJed Brown 
16260a96aa3bSJed Brown       if (p >= cEnd) {
16270a96aa3bSJed Brown         numSupp--;
16280a96aa3bSJed Brown         if (s) supp = &supp[1 - s];
16290a96aa3bSJed Brown         break;
16300a96aa3bSJed Brown       }
16310a96aa3bSJed Brown     }
16320a96aa3bSJed Brown     for (s = 0; s < numSupp; s++) {
16330a96aa3bSJed Brown       PetscInt       p = supp[s], i;
16340a96aa3bSJed Brown       PetscInt       numCone;
16350a96aa3bSJed Brown       DMPolytopeType ct;
16360a96aa3bSJed Brown       const PetscInt *cone;
16370a96aa3bSJed Brown       const PetscInt *ornt;
16380a96aa3bSJed Brown       PetscInt       orient = PETSC_MIN_INT;
16390a96aa3bSJed Brown 
16409566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, p, &numCone));
164163a3b9bcSJacob Faibussowitsch       PetscCheck(numCone == P4EST_FACES,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"cell %" PetscInt_FMT " has %" PetscInt_FMT " facets, expect %d",p,numCone,P4EST_FACES);
16429566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, p, &cone));
16439566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, cone[0], &ct));
16449566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeOrientation(dm, p, &ornt));
16450a96aa3bSJed Brown       for (i = 0; i < P4EST_FACES; i++) {
16460a96aa3bSJed Brown         if (cone[i] == f) {
16470a96aa3bSJed Brown           orient = DMPolytopeConvertNewOrientation_Internal(ct, ornt[i]);
16480a96aa3bSJed Brown           break;
16490a96aa3bSJed Brown         }
16500a96aa3bSJed Brown       }
165163a3b9bcSJacob Faibussowitsch       PetscCheck(i < P4EST_FACES,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"cell %" PetscInt_FMT " faced %" PetscInt_FMT " mismatch",p,f);
16520a96aa3bSJed Brown       if (p < cStart || p >= cEnd) {
16530a96aa3bSJed Brown         DMPolytopeType ct;
16549566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, p, &ct));
165563a3b9bcSJacob Faibussowitsch         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"cell %" PetscInt_FMT " (%s) should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")",p,DMPolytopeTypes[ct],cStart,cEnd);
16560a96aa3bSJed Brown       }
16570a96aa3bSJed Brown       ttf[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = f - fStart;
16580a96aa3bSJed Brown       if (numSupp == 1) {
16590a96aa3bSJed Brown         /* boundary faces indicated by self reference */
16600a96aa3bSJed Brown         conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = p - cStart;
16610a96aa3bSJed Brown         conn->tree_to_face[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = (int8_t) PetscFaceToP4estFace[i];
16620a96aa3bSJed Brown       } else {
16630a96aa3bSJed Brown         const PetscInt N = P4EST_CHILDREN / 2;
16640a96aa3bSJed Brown 
16650a96aa3bSJed Brown         conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = supp[1 - s] - cStart;
16660a96aa3bSJed Brown         myFace[s] = PetscFaceToP4estFace[i];
16670a96aa3bSJed Brown         /* get the orientation of cell p in p4est-type closure to facet f, by composing the p4est-closure to
16680a96aa3bSJed Brown          * petsc-closure permutation and the petsc-closure to facet orientation */
16690a96aa3bSJed Brown         myOrnt[s] = DihedralCompose(N,orient,DMPolytopeConvertNewOrientation_Internal(ct, P4estFaceToPetscOrnt[myFace[s]]));
16700a96aa3bSJed Brown       }
16710a96aa3bSJed Brown     }
16720a96aa3bSJed Brown     if (numSupp == 2) {
16730a96aa3bSJed Brown       for (s = 0; s < numSupp; s++) {
16740a96aa3bSJed Brown         PetscInt       p = supp[s];
16750a96aa3bSJed Brown         PetscInt       orntAtoB;
16760a96aa3bSJed Brown         PetscInt       p4estOrient;
16770a96aa3bSJed Brown         const PetscInt N = P4EST_CHILDREN / 2;
16780a96aa3bSJed Brown 
16790a96aa3bSJed Brown         /* composing the forward permutation with the other cell's inverse permutation gives the self-to-neighbor
16800a96aa3bSJed Brown          * permutation of this cell-facet's cone */
16810a96aa3bSJed Brown         orntAtoB = DihedralCompose(N,DihedralInvert(N,myOrnt[1-s]),myOrnt[s]);
16820a96aa3bSJed Brown 
16830a96aa3bSJed Brown         /* convert cone-description permutation (i.e., edges around facet) to cap-description permutation (i.e.,
16840a96aa3bSJed Brown          * vertices around facet) */
16850a96aa3bSJed Brown #if !defined(P4_TO_P8)
16860a96aa3bSJed Brown         p4estOrient = orntAtoB < 0 ? -(orntAtoB + 1) : orntAtoB;
16870a96aa3bSJed Brown #else
16880a96aa3bSJed Brown         {
16890a96aa3bSJed Brown           PetscInt firstVert      = orntAtoB < 0 ? ((-orntAtoB) % N) : orntAtoB;
16900a96aa3bSJed Brown           PetscInt p4estFirstVert = firstVert < 2 ? firstVert : (firstVert ^ 1);
16910a96aa3bSJed Brown 
16920a96aa3bSJed Brown                                                                                            /* swap bits */
16930a96aa3bSJed Brown           p4estOrient = ((myFace[s] <= myFace[1 - s]) || (orntAtoB < 0)) ? p4estFirstVert : ((p4estFirstVert >> 1) | ((p4estFirstVert & 1) << 1));
16940a96aa3bSJed Brown         }
16950a96aa3bSJed Brown #endif
16960a96aa3bSJed Brown         /* encode neighbor face and orientation in tree_to_face per p4est_connectivity standard (see
16970a96aa3bSJed Brown          * p4est_connectivity.h, p8est_connectivity.h) */
16980a96aa3bSJed Brown         conn->tree_to_face[P4EST_FACES * (p - cStart) + myFace[s]] = (int8_t) myFace[1 - s] + p4estOrient * P4EST_FACES;
16990a96aa3bSJed Brown       }
17000a96aa3bSJed Brown     }
17010a96aa3bSJed Brown   }
17020a96aa3bSJed Brown 
17030a96aa3bSJed Brown #if defined(P4_TO_P8)
17040a96aa3bSJed Brown   /* 3: visit every edge */
17050a96aa3bSJed Brown   conn->ett_offset[0] = 0;
17060a96aa3bSJed Brown   for (e = eStart; e < eEnd; e++) {
17070a96aa3bSJed Brown     PetscInt off, s;
17080a96aa3bSJed Brown 
17099566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(ett,e,&off));
17100a96aa3bSJed Brown     conn->ett_offset[e - eStart] = (p4est_topidx_t) off;
17119566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm,e,PETSC_FALSE,&starSize,&star));
17120a96aa3bSJed Brown     for (s = 0; s < starSize; s++) {
17130a96aa3bSJed Brown       PetscInt p = star[2 * s];
17140a96aa3bSJed Brown 
17150a96aa3bSJed Brown       if (p >= cStart && p < cEnd) {
17169566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure));
171708401ef6SPierre Jolivet         PetscCheck(closureSize == P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Non-standard closure");
17180a96aa3bSJed Brown         for (c = 0; c < P8EST_EDGES; c++) {
17190a96aa3bSJed Brown           PetscInt cellEdge = closure[2 * (c + edgeOff)];
17200a96aa3bSJed Brown           PetscInt cellOrnt = closure[2 * (c + edgeOff) + 1];
17210a96aa3bSJed Brown           DMPolytopeType ct;
17220a96aa3bSJed Brown 
17239566063dSJacob Faibussowitsch           PetscCall(DMPlexGetCellType(dm, cellEdge, &ct));
17240a96aa3bSJed Brown           cellOrnt = DMPolytopeConvertNewOrientation_Internal(ct, cellOrnt);
17250a96aa3bSJed Brown           if (cellEdge == e) {
17260a96aa3bSJed Brown             PetscInt p4estEdge = PetscEdgeToP4estEdge[c];
17270a96aa3bSJed Brown             PetscInt totalOrient;
17280a96aa3bSJed Brown 
17290a96aa3bSJed Brown             /* compose p4est-closure to petsc-closure permutation and petsc-closure to edge orientation */
17300a96aa3bSJed Brown             totalOrient = DihedralCompose(2,cellOrnt,DMPolytopeConvertNewOrientation_Internal(DM_POLYTOPE_SEGMENT, P4estEdgeToPetscOrnt[p4estEdge]));
17310a96aa3bSJed Brown             /* p4est orientations are positive: -2 => 1, -1 => 0 */
17320a96aa3bSJed Brown             totalOrient             = (totalOrient < 0) ? -(totalOrient + 1) : totalOrient;
17330a96aa3bSJed Brown             conn->edge_to_tree[off] = (p4est_locidx_t) (p - cStart);
17340a96aa3bSJed Brown             /* encode cell-edge and orientation in edge_to_edge per p8est_connectivity standart (see
17350a96aa3bSJed Brown              * p8est_connectivity.h) */
17360a96aa3bSJed Brown             conn->edge_to_edge[off++] = (int8_t) p4estEdge + P8EST_EDGES * totalOrient;
17370a96aa3bSJed Brown             conn->tree_to_edge[P8EST_EDGES * (p - cStart) + p4estEdge] = e - eStart;
17380a96aa3bSJed Brown           }
17390a96aa3bSJed Brown         }
17409566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure));
17410a96aa3bSJed Brown       }
17420a96aa3bSJed Brown     }
17439566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm,e,PETSC_FALSE,&starSize,&star));
17440a96aa3bSJed Brown   }
17459566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&ett));
17460a96aa3bSJed Brown #endif
17470a96aa3bSJed Brown 
17480a96aa3bSJed Brown   /* 4: visit every vertex */
17490a96aa3bSJed Brown   conn->ctt_offset[0] = 0;
17500a96aa3bSJed Brown   for (v = vStart; v < vEnd; v++) {
17510a96aa3bSJed Brown     PetscInt off, s;
17520a96aa3bSJed Brown 
17539566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(ctt,v,&off));
17540a96aa3bSJed Brown     conn->ctt_offset[v - vStart] = (p4est_topidx_t) off;
17559566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm,v,PETSC_FALSE,&starSize,&star));
17560a96aa3bSJed Brown     for (s = 0; s < starSize; s++) {
17570a96aa3bSJed Brown       PetscInt p = star[2 * s];
17580a96aa3bSJed Brown 
17590a96aa3bSJed Brown       if (p >= cStart && p < cEnd) {
17609566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure));
176108401ef6SPierre Jolivet         PetscCheck(closureSize == P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Non-standard closure");
17620a96aa3bSJed Brown         for (c = 0; c < P4EST_CHILDREN; c++) {
17630a96aa3bSJed Brown           PetscInt cellVert = closure[2 * (c + vertOff)];
17640a96aa3bSJed Brown 
17650a96aa3bSJed Brown           if (cellVert == v) {
17660a96aa3bSJed Brown             PetscInt p4estVert = PetscVertToP4estVert[c];
17670a96aa3bSJed Brown 
17680a96aa3bSJed Brown             conn->corner_to_tree[off]     = (p4est_locidx_t) (p - cStart);
17690a96aa3bSJed Brown             conn->corner_to_corner[off++] = (int8_t) p4estVert;
17700a96aa3bSJed Brown             conn->tree_to_corner[P4EST_CHILDREN * (p - cStart) + p4estVert] = v - vStart;
17710a96aa3bSJed Brown           }
17720a96aa3bSJed Brown         }
17739566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm,p,PETSC_TRUE,&closureSize,&closure));
17740a96aa3bSJed Brown       }
17750a96aa3bSJed Brown     }
17769566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm,v,PETSC_FALSE,&starSize,&star));
17770a96aa3bSJed Brown   }
17789566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&ctt));
17790a96aa3bSJed Brown 
17800a96aa3bSJed Brown   /* 5: Compute the coordinates */
17810a96aa3bSJed Brown   {
17820a96aa3bSJed Brown     PetscInt coordDim;
17830a96aa3bSJed Brown 
17849566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(dm, &coordDim));
17856858538eSMatthew G. Knepley     PetscCall(DMGetCoordinatesLocalSetUp(dm));
17860a96aa3bSJed Brown     for (c = cStart; c < cEnd; c++) {
17870a96aa3bSJed Brown       PetscInt           dof;
17886858538eSMatthew G. Knepley       PetscBool          isDG;
17890a96aa3bSJed Brown       PetscScalar       *cellCoords = NULL;
17906858538eSMatthew G. Knepley       const PetscScalar *array;
17910a96aa3bSJed Brown 
17926858538eSMatthew G. Knepley       PetscCall(DMPlexGetCellCoordinates(dm, c, &isDG, &dof, &array, &cellCoords));
17936858538eSMatthew G. Knepley       PetscCheck(dof == P4EST_CHILDREN * coordDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Need coordinates at the corners: (dof) %" PetscInt_FMT " != %d * %" PetscInt_FMT " (sdim)", dof, P4EST_CHILDREN, coordDim);
17940a96aa3bSJed Brown       for (v = 0; v < P4EST_CHILDREN; v++) {
17950a96aa3bSJed Brown         PetscInt i, lim = PetscMin(3, coordDim);
17960a96aa3bSJed Brown         PetscInt p4estVert = PetscVertToP4estVert[v];
17970a96aa3bSJed Brown 
17980a96aa3bSJed Brown         conn->tree_to_vertex[P4EST_CHILDREN * (c - cStart) + v] = P4EST_CHILDREN * (c - cStart) + v;
17990a96aa3bSJed Brown         /* p4est vertices are always embedded in R^3 */
18000a96aa3bSJed Brown         for (i = 0; i < 3; i++)   conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = 0.;
18010a96aa3bSJed Brown         for (i = 0; i < lim; i++) conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = PetscRealPart(cellCoords[v * coordDim + i]);
18020a96aa3bSJed Brown       }
18036858538eSMatthew G. Knepley       PetscCall(DMPlexRestoreCellCoordinates(dm, c, &isDG, &dof, &array, &cellCoords));
18040a96aa3bSJed Brown     }
18050a96aa3bSJed Brown   }
18060a96aa3bSJed Brown 
18070a96aa3bSJed Brown #if defined(P4EST_ENABLE_DEBUG)
180808401ef6SPierre Jolivet   PetscCheck(p4est_connectivity_is_valid(conn),PETSC_COMM_SELF,PETSC_ERR_PLIB,"Plex to p4est conversion failed");
18090a96aa3bSJed Brown #endif
18100a96aa3bSJed Brown 
18110a96aa3bSJed Brown   *connOut = conn;
18120a96aa3bSJed Brown 
18130a96aa3bSJed Brown   *tree_face_to_uniq = ttf;
18140a96aa3bSJed Brown 
18150a96aa3bSJed Brown   PetscFunctionReturn(0);
18160a96aa3bSJed Brown }
18170a96aa3bSJed Brown 
18180a96aa3bSJed Brown static PetscErrorCode locidx_to_PetscInt(sc_array_t * array)
18190a96aa3bSJed Brown {
18200a96aa3bSJed Brown   sc_array_t *newarray;
18210a96aa3bSJed Brown   size_t     zz, count = array->elem_count;
18220a96aa3bSJed Brown 
18230a96aa3bSJed Brown   PetscFunctionBegin;
182408401ef6SPierre Jolivet   PetscCheck(array->elem_size == sizeof(p4est_locidx_t),PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong locidx size");
18250a96aa3bSJed Brown 
18260a96aa3bSJed Brown   if (sizeof(p4est_locidx_t) == sizeof(PetscInt)) PetscFunctionReturn(0);
18270a96aa3bSJed Brown 
18280a96aa3bSJed Brown   newarray = sc_array_new_size (sizeof(PetscInt), array->elem_count);
18290a96aa3bSJed Brown   for (zz = 0; zz < count; zz++) {
18300a96aa3bSJed Brown     p4est_locidx_t il  = *((p4est_locidx_t*) sc_array_index (array, zz));
18310a96aa3bSJed Brown     PetscInt       *ip = (PetscInt*) sc_array_index (newarray, zz);
18320a96aa3bSJed Brown 
18330a96aa3bSJed Brown     *ip = (PetscInt) il;
18340a96aa3bSJed Brown   }
18350a96aa3bSJed Brown 
18360a96aa3bSJed Brown   sc_array_reset (array);
18370a96aa3bSJed Brown   sc_array_init_size (array, sizeof(PetscInt), count);
18380a96aa3bSJed Brown   sc_array_copy (array, newarray);
18390a96aa3bSJed Brown   sc_array_destroy (newarray);
18400a96aa3bSJed Brown   PetscFunctionReturn(0);
18410a96aa3bSJed Brown }
18420a96aa3bSJed Brown 
18430a96aa3bSJed Brown static PetscErrorCode coords_double_to_PetscScalar(sc_array_t * array, PetscInt dim)
18440a96aa3bSJed Brown {
18450a96aa3bSJed Brown   sc_array_t *newarray;
18460a96aa3bSJed Brown   size_t     zz, count = array->elem_count;
18470a96aa3bSJed Brown 
18480a96aa3bSJed Brown   PetscFunctionBegin;
18491dca8a05SBarry Smith   PetscCheck(array->elem_size == 3 * sizeof(double),PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong coordinate size");
18500a96aa3bSJed Brown #if !defined(PETSC_USE_COMPLEX)
18510a96aa3bSJed Brown   if (sizeof(double) == sizeof(PetscScalar) && dim == 3) PetscFunctionReturn(0);
18520a96aa3bSJed Brown #endif
18530a96aa3bSJed Brown 
18540a96aa3bSJed Brown   newarray = sc_array_new_size (dim * sizeof(PetscScalar), array->elem_count);
18550a96aa3bSJed Brown   for (zz = 0; zz < count; zz++) {
18560a96aa3bSJed Brown     int         i;
18570a96aa3bSJed Brown     double      *id = (double*) sc_array_index (array, zz);
18580a96aa3bSJed Brown     PetscScalar *ip = (PetscScalar*) sc_array_index (newarray, zz);
18590a96aa3bSJed Brown 
18600a96aa3bSJed Brown     for (i = 0; i < dim; i++) ip[i] = 0.;
18610a96aa3bSJed Brown     for (i = 0; i < PetscMin(dim,3); i++) ip[i] = (PetscScalar) id[i];
18620a96aa3bSJed Brown   }
18630a96aa3bSJed Brown 
18640a96aa3bSJed Brown   sc_array_reset (array);
18650a96aa3bSJed Brown   sc_array_init_size (array, dim * sizeof(PetscScalar), count);
18660a96aa3bSJed Brown   sc_array_copy (array, newarray);
18670a96aa3bSJed Brown   sc_array_destroy (newarray);
18680a96aa3bSJed Brown   PetscFunctionReturn(0);
18690a96aa3bSJed Brown }
18700a96aa3bSJed Brown 
18710a96aa3bSJed Brown static PetscErrorCode locidx_pair_to_PetscSFNode(sc_array_t * array)
18720a96aa3bSJed Brown {
18730a96aa3bSJed Brown   sc_array_t *newarray;
18740a96aa3bSJed Brown   size_t     zz, count = array->elem_count;
18750a96aa3bSJed Brown 
18760a96aa3bSJed Brown   PetscFunctionBegin;
18771dca8a05SBarry Smith   PetscCheck(array->elem_size == 2 * sizeof(p4est_locidx_t),PETSC_COMM_SELF,PETSC_ERR_PLIB,"Wrong locidx size");
18780a96aa3bSJed Brown 
18790a96aa3bSJed Brown   newarray = sc_array_new_size (sizeof(PetscSFNode), array->elem_count);
18800a96aa3bSJed Brown   for (zz = 0; zz < count; zz++) {
18810a96aa3bSJed Brown     p4est_locidx_t *il = (p4est_locidx_t*) sc_array_index (array, zz);
18820a96aa3bSJed Brown     PetscSFNode    *ip = (PetscSFNode*) sc_array_index (newarray, zz);
18830a96aa3bSJed Brown 
18840a96aa3bSJed Brown     ip->rank  = (PetscInt) il[0];
18850a96aa3bSJed Brown     ip->index = (PetscInt) il[1];
18860a96aa3bSJed Brown   }
18870a96aa3bSJed Brown 
18880a96aa3bSJed Brown   sc_array_reset (array);
18890a96aa3bSJed Brown   sc_array_init_size (array, sizeof(PetscSFNode), count);
18900a96aa3bSJed Brown   sc_array_copy (array, newarray);
18910a96aa3bSJed Brown   sc_array_destroy (newarray);
18920a96aa3bSJed Brown   PetscFunctionReturn(0);
18930a96aa3bSJed Brown }
18940a96aa3bSJed Brown 
18950a96aa3bSJed Brown static PetscErrorCode P4estToPlex_Local(p4est_t *p4est, DM * plex)
18960a96aa3bSJed Brown {
18970a96aa3bSJed Brown   PetscFunctionBegin;
18980a96aa3bSJed Brown   {
18990a96aa3bSJed Brown     sc_array_t     *points_per_dim    = sc_array_new(sizeof(p4est_locidx_t));
19000a96aa3bSJed Brown     sc_array_t     *cone_sizes        = sc_array_new(sizeof(p4est_locidx_t));
19010a96aa3bSJed Brown     sc_array_t     *cones             = sc_array_new(sizeof(p4est_locidx_t));
19020a96aa3bSJed Brown     sc_array_t     *cone_orientations = sc_array_new(sizeof(p4est_locidx_t));
19030a96aa3bSJed Brown     sc_array_t     *coords            = sc_array_new(3 * sizeof(double));
19040a96aa3bSJed Brown     sc_array_t     *children          = sc_array_new(sizeof(p4est_locidx_t));
19050a96aa3bSJed Brown     sc_array_t     *parents           = sc_array_new(sizeof(p4est_locidx_t));
19060a96aa3bSJed Brown     sc_array_t     *childids          = sc_array_new(sizeof(p4est_locidx_t));
19070a96aa3bSJed Brown     sc_array_t     *leaves            = sc_array_new(sizeof(p4est_locidx_t));
19080a96aa3bSJed Brown     sc_array_t     *remotes           = sc_array_new(2 * sizeof(p4est_locidx_t));
19090a96aa3bSJed Brown     p4est_locidx_t first_local_quad;
19100a96aa3bSJed Brown 
1911792fecdfSBarry Smith     PetscCallP4est(p4est_get_plex_data,(p4est,P4EST_CONNECT_FULL,0,&first_local_quad,points_per_dim,cone_sizes,cones,cone_orientations,coords,children,parents,childids,leaves,remotes));
19120a96aa3bSJed Brown 
19139566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(points_per_dim));
19149566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cone_sizes));
19159566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cones));
19169566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cone_orientations));
19179566063dSJacob Faibussowitsch     PetscCall(coords_double_to_PetscScalar(coords, P4EST_DIM));
19180a96aa3bSJed Brown 
19199566063dSJacob Faibussowitsch     PetscCall(DMPlexCreate(PETSC_COMM_SELF,plex));
19209566063dSJacob Faibussowitsch     PetscCall(DMSetDimension(*plex,P4EST_DIM));
19219566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateFromDAG(*plex,P4EST_DIM,(PetscInt*)points_per_dim->array,(PetscInt*)cone_sizes->array,(PetscInt*)cones->array,(PetscInt*)cone_orientations->array,(PetscScalar*)coords->array));
19229566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertOldOrientations_Internal(*plex));
19230a96aa3bSJed Brown     sc_array_destroy (points_per_dim);
19240a96aa3bSJed Brown     sc_array_destroy (cone_sizes);
19250a96aa3bSJed Brown     sc_array_destroy (cones);
19260a96aa3bSJed Brown     sc_array_destroy (cone_orientations);
19270a96aa3bSJed Brown     sc_array_destroy (coords);
19280a96aa3bSJed Brown     sc_array_destroy (children);
19290a96aa3bSJed Brown     sc_array_destroy (parents);
19300a96aa3bSJed Brown     sc_array_destroy (childids);
19310a96aa3bSJed Brown     sc_array_destroy (leaves);
19320a96aa3bSJed Brown     sc_array_destroy (remotes);
19330a96aa3bSJed Brown   }
19340a96aa3bSJed Brown   PetscFunctionReturn(0);
19350a96aa3bSJed Brown }
19360a96aa3bSJed Brown 
19370a96aa3bSJed Brown #define DMReferenceTreeGetChildSymmetry_pforest _append_pforest(DMReferenceTreeGetChildSymmetry)
19380a96aa3bSJed Brown static PetscErrorCode DMReferenceTreeGetChildSymmetry_pforest(DM dm, PetscInt parent, PetscInt parentOrientA, PetscInt childOrientA, PetscInt childA, PetscInt parentOrientB, PetscInt *childOrientB,PetscInt *childB)
19390a96aa3bSJed Brown {
19400a96aa3bSJed Brown   PetscInt       coneSize, dStart, dEnd, vStart, vEnd, dim, ABswap, oAvert, oBvert, ABswapVert;
19410a96aa3bSJed Brown 
19420a96aa3bSJed Brown   PetscFunctionBegin;
19430a96aa3bSJed Brown   if (parentOrientA == parentOrientB) {
19440a96aa3bSJed Brown     if (childOrientB) *childOrientB = childOrientA;
19450a96aa3bSJed Brown     if (childB) *childB = childA;
19460a96aa3bSJed Brown     PetscFunctionReturn(0);
19470a96aa3bSJed Brown   }
19489566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm,0,&vStart,&vEnd));
19496aad120cSJose E. Roman   if (childA >= vStart && childA < vEnd) { /* vertices (always in the middle) are invariant under rotation */
19500a96aa3bSJed Brown     if (childOrientB) *childOrientB = 0;
19510a96aa3bSJed Brown     if (childB) *childB = childA;
19520a96aa3bSJed Brown     PetscFunctionReturn(0);
19530a96aa3bSJed Brown   }
19540a96aa3bSJed Brown   for (dim = 0; dim < 3; dim++) {
19559566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm,dim,&dStart,&dEnd));
19560a96aa3bSJed Brown     if (parent >= dStart && parent <= dEnd) break;
19570a96aa3bSJed Brown   }
195863a3b9bcSJacob Faibussowitsch   PetscCheck(dim <= 2,PETSC_COMM_SELF,PETSC_ERR_SUP,"Cannot perform child symmetry for %" PetscInt_FMT "-cells",dim);
195928b400f6SJacob Faibussowitsch   PetscCheck(dim,PETSC_COMM_SELF,PETSC_ERR_PLIB,"A vertex has no children");
19600a96aa3bSJed Brown   if (childA < dStart || childA >= dEnd) { /* a 1-cell in a 2-cell */
19610a96aa3bSJed Brown     /* this is a lower-dimensional child: bootstrap */
19620a96aa3bSJed Brown     PetscInt       size, i, sA = -1, sB, sOrientB, sConeSize;
19630a96aa3bSJed Brown     const PetscInt *supp, *coneA, *coneB, *oA, *oB;
19640a96aa3bSJed Brown 
19659566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm,childA,&size));
19669566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm,childA,&supp));
19670a96aa3bSJed Brown 
19680a96aa3bSJed Brown     /* find a point sA in supp(childA) that has the same parent */
19690a96aa3bSJed Brown     for (i = 0; i < size; i++) {
19700a96aa3bSJed Brown       PetscInt sParent;
19710a96aa3bSJed Brown 
19720a96aa3bSJed Brown       sA = supp[i];
19730a96aa3bSJed Brown       if (sA == parent) continue;
19749566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTreeParent(dm,sA,&sParent,NULL));
19750a96aa3bSJed Brown       if (sParent == parent) break;
19760a96aa3bSJed Brown     }
197708401ef6SPierre Jolivet     PetscCheck(i != size,PETSC_COMM_SELF,PETSC_ERR_PLIB,"could not find support in children");
19780a96aa3bSJed Brown     /* find out which point sB is in an equivalent position to sA under
19790a96aa3bSJed Brown      * parentOrientB */
19809566063dSJacob Faibussowitsch     PetscCall(DMReferenceTreeGetChildSymmetry_pforest(dm,parent,parentOrientA,0,sA,parentOrientB,&sOrientB,&sB));
19819566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm,sA,&sConeSize));
19829566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm,sA,&coneA));
19839566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm,sB,&coneB));
19849566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm,sA,&oA));
19859566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm,sB,&oB));
19860a96aa3bSJed Brown     /* step through the cone of sA in natural order */
19870a96aa3bSJed Brown     for (i = 0; i < sConeSize; i++) {
19880a96aa3bSJed Brown       if (coneA[i] == childA) {
19890a96aa3bSJed Brown         /* if childA is at position i in coneA,
19900a96aa3bSJed Brown          * then we want the point that is at sOrientB*i in coneB */
19910a96aa3bSJed Brown         PetscInt j = (sOrientB >= 0) ? ((sOrientB + i) % sConeSize) : ((sConeSize -(sOrientB+1) - i) % sConeSize);
19920a96aa3bSJed Brown         if (childB) *childB = coneB[j];
19930a96aa3bSJed Brown         if (childOrientB) {
19940a96aa3bSJed Brown           DMPolytopeType ct;
19950a96aa3bSJed Brown           PetscInt       oBtrue;
19960a96aa3bSJed Brown 
19979566063dSJacob Faibussowitsch           PetscCall(DMPlexGetConeSize(dm,childA,&coneSize));
19980a96aa3bSJed Brown           /* compose sOrientB and oB[j] */
19991dca8a05SBarry Smith           PetscCheck(coneSize == 0 || coneSize == 2,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Expected a vertex or an edge");
20000a96aa3bSJed Brown           ct = coneSize ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT;
20010a96aa3bSJed Brown           /* we may have to flip an edge */
20020a96aa3bSJed Brown           oBtrue        = (sOrientB >= 0) ? oB[j] : DMPolytopeTypeComposeOrientationInv(ct, -1, oB[j]);
20030a96aa3bSJed Brown           oBtrue        = DMPolytopeConvertNewOrientation_Internal(ct, oBtrue);
20040a96aa3bSJed Brown           ABswap        = DihedralSwap(coneSize,DMPolytopeConvertNewOrientation_Internal(ct, oA[i]),oBtrue);
20050a96aa3bSJed Brown           *childOrientB = DihedralCompose(coneSize,childOrientA,ABswap);
20060a96aa3bSJed Brown         }
20070a96aa3bSJed Brown         break;
20080a96aa3bSJed Brown       }
20090a96aa3bSJed Brown     }
201008401ef6SPierre Jolivet     PetscCheck(i != sConeSize,PETSC_COMM_SELF,PETSC_ERR_PLIB,"support cone mismatch");
20110a96aa3bSJed Brown     PetscFunctionReturn(0);
20120a96aa3bSJed Brown   }
20130a96aa3bSJed Brown   /* get the cone size and symmetry swap */
20149566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm,parent,&coneSize));
20150a96aa3bSJed Brown   ABswap = DihedralSwap(coneSize, parentOrientA, parentOrientB);
20160a96aa3bSJed Brown   if (dim == 2) {
20170a96aa3bSJed Brown     /* orientations refer to cones: we want them to refer to vertices:
20180a96aa3bSJed Brown      * if it's a rotation, they are the same, but if the order is reversed, a
20190a96aa3bSJed Brown      * permutation that puts side i first does *not* put vertex i first */
20200a96aa3bSJed Brown     oAvert     = (parentOrientA >= 0) ? parentOrientA : -((-parentOrientA % coneSize) + 1);
20210a96aa3bSJed Brown     oBvert     = (parentOrientB >= 0) ? parentOrientB : -((-parentOrientB % coneSize) + 1);
20220a96aa3bSJed Brown     ABswapVert = DihedralSwap(coneSize, oAvert, oBvert);
20230a96aa3bSJed Brown   } else {
20240a96aa3bSJed Brown     oAvert     = parentOrientA;
20250a96aa3bSJed Brown     oBvert     = parentOrientB;
20260a96aa3bSJed Brown     ABswapVert = ABswap;
20270a96aa3bSJed Brown   }
20280a96aa3bSJed Brown   if (childB) {
20290a96aa3bSJed Brown     /* assume that each child corresponds to a vertex, in the same order */
20300a96aa3bSJed Brown     PetscInt       p, posA = -1, numChildren, i;
20310a96aa3bSJed Brown     const PetscInt *children;
20320a96aa3bSJed Brown 
20330a96aa3bSJed Brown     /* count which position the child is in */
20349566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm,parent,&numChildren,&children));
20350a96aa3bSJed Brown     for (i = 0; i < numChildren; i++) {
20360a96aa3bSJed Brown       p = children[i];
20370a96aa3bSJed Brown       if (p == childA) {
20380a96aa3bSJed Brown         if (dim == 1) {
20390a96aa3bSJed Brown           posA = i;
20400a96aa3bSJed Brown         } else { /* 2D Morton to rotation */
20410a96aa3bSJed Brown           posA = (i & 2) ? (i ^ 1) : i;
20420a96aa3bSJed Brown         }
20430a96aa3bSJed Brown         break;
20440a96aa3bSJed Brown       }
20450a96aa3bSJed Brown     }
20460a96aa3bSJed Brown     if (posA >= coneSize) {
20470a96aa3bSJed Brown       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find childA in children of parent");
20480a96aa3bSJed Brown     } else {
20490a96aa3bSJed Brown       /* figure out position B by applying ABswapVert */
20500a96aa3bSJed Brown       PetscInt posB, childIdB;
20510a96aa3bSJed Brown 
20520a96aa3bSJed Brown       posB = (ABswapVert >= 0) ? ((ABswapVert + posA) % coneSize) : ((coneSize -(ABswapVert + 1) - posA) % coneSize);
20530a96aa3bSJed Brown       if (dim == 1) {
20540a96aa3bSJed Brown         childIdB = posB;
20550a96aa3bSJed Brown       } else { /* 2D rotation to Morton */
20560a96aa3bSJed Brown         childIdB = (posB & 2) ? (posB ^ 1) : posB;
20570a96aa3bSJed Brown       }
20580a96aa3bSJed Brown       if (childB) *childB = children[childIdB];
20590a96aa3bSJed Brown     }
20600a96aa3bSJed Brown   }
20610a96aa3bSJed Brown   if (childOrientB) *childOrientB = DihedralCompose(coneSize,childOrientA,ABswap);
20620a96aa3bSJed Brown   PetscFunctionReturn(0);
20630a96aa3bSJed Brown }
20640a96aa3bSJed Brown 
20650a96aa3bSJed Brown #define DMCreateReferenceTree_pforest _append_pforest(DMCreateReferenceTree)
20660a96aa3bSJed Brown static PetscErrorCode DMCreateReferenceTree_pforest(MPI_Comm comm, DM *dm)
20670a96aa3bSJed Brown {
20680a96aa3bSJed Brown   p4est_connectivity_t *refcube;
20690a96aa3bSJed Brown   p4est_t              *root, *refined;
20700a96aa3bSJed Brown   DM                   dmRoot, dmRefined;
20710a96aa3bSJed Brown   DM_Plex              *mesh;
20720a96aa3bSJed Brown   PetscMPIInt          rank;
207366c0a4b5SToby Isaac #if defined(PETSC_HAVE_MPIUNI)
207466c0a4b5SToby Isaac   sc_MPI_Comm          comm_self = sc_MPI_COMM_SELF;
207566c0a4b5SToby Isaac #else
207666c0a4b5SToby Isaac   MPI_Comm             comm_self = PETSC_COMM_SELF;
207766c0a4b5SToby Isaac #endif
20780a96aa3bSJed Brown 
20790a96aa3bSJed Brown   PetscFunctionBegin;
2080792fecdfSBarry Smith   PetscCallP4estReturn(refcube,p4est_connectivity_new_byname,("unit"));
20810a96aa3bSJed Brown   { /* [-1,1]^d geometry */
20820a96aa3bSJed Brown     PetscInt i, j;
20830a96aa3bSJed Brown 
20840a96aa3bSJed Brown     for (i = 0; i < P4EST_CHILDREN; i++) {
20850a96aa3bSJed Brown       for (j = 0; j < 3; j++) {
20860a96aa3bSJed Brown         refcube->vertices[3 * i + j] *= 2.;
20870a96aa3bSJed Brown         refcube->vertices[3 * i + j] -= 1.;
20880a96aa3bSJed Brown       }
20890a96aa3bSJed Brown     }
20900a96aa3bSJed Brown   }
2091792fecdfSBarry Smith   PetscCallP4estReturn(root,p4est_new,(comm_self,refcube,0,NULL,NULL));
2092792fecdfSBarry Smith   PetscCallP4estReturn(refined,p4est_new_ext,(comm_self,refcube,0,1,1,0,NULL,NULL));
20939566063dSJacob Faibussowitsch   PetscCall(P4estToPlex_Local(root,&dmRoot));
20949566063dSJacob Faibussowitsch   PetscCall(P4estToPlex_Local(refined,&dmRefined));
20950a96aa3bSJed Brown   {
20960a96aa3bSJed Brown #if !defined(P4_TO_P8)
20970a96aa3bSJed Brown     PetscInt nPoints  = 25;
20980a96aa3bSJed Brown     PetscInt perm[25] = {0, 1, 2, 3,
20990a96aa3bSJed Brown                           4, 12, 8, 14,
21000a96aa3bSJed Brown                               6, 9, 15,
21010a96aa3bSJed Brown                           5, 13,    10,
21020a96aa3bSJed Brown                               7,    11,
21030a96aa3bSJed Brown                          16, 22, 20, 24,
21040a96aa3bSJed Brown                              17,     21,
21050a96aa3bSJed Brown                                  18, 23,
21060a96aa3bSJed Brown                                      19};
21070a96aa3bSJed Brown     PetscInt ident[25] = {0, 0, 0, 0,
21080a96aa3bSJed Brown                           1, 1, 2, 2, 3, 3, 4, 4, 0, 0, 0, 0,
21090a96aa3bSJed Brown                           5, 6, 7, 8, 1, 2, 3, 4, 0};
21100a96aa3bSJed Brown #else
21110a96aa3bSJed Brown     PetscInt nPoints   = 125;
21120a96aa3bSJed Brown     PetscInt perm[125] = {0, 1, 2, 3, 4, 5, 6, 7,
21130a96aa3bSJed Brown                            8, 32, 16, 36, 24, 40,
21140a96aa3bSJed Brown                               12, 17, 37, 25, 41,
21150a96aa3bSJed Brown                            9, 33,     20, 26, 42,
21160a96aa3bSJed Brown                               13,     21, 27, 43,
21170a96aa3bSJed Brown                           10, 34, 18, 38,     28,
21180a96aa3bSJed Brown                               14, 19, 39,     29,
21190a96aa3bSJed Brown                           11, 35,     22,     30,
21200a96aa3bSJed Brown                               15,     23,     31,
21210a96aa3bSJed Brown                           44, 84, 76, 92, 52, 86, 68, 94, 60, 78, 70, 96,
21220a96aa3bSJed Brown                           45, 85, 77, 93,     54,     72,     62,     74,
21230a96aa3bSJed Brown                               46,     80, 53, 87, 69, 95,         64, 82,
21240a96aa3bSJed Brown                               47,     81,     55,     73,             66,
21250a96aa3bSJed Brown                                   48, 88,         56, 90, 61, 79, 71, 97,
21260a96aa3bSJed Brown                                   49, 89,             58,     63,     75,
21270a96aa3bSJed Brown                                       50,         57, 91,         65, 83,
21280a96aa3bSJed Brown                                       51,             59,             67,
21290a96aa3bSJed Brown                            98, 106, 110, 122, 114, 120, 118, 124,
21300a96aa3bSJed Brown                                 99,      111,      115,      119,
21310a96aa3bSJed Brown                                     100, 107,           116, 121,
21320a96aa3bSJed Brown                                          101,                117,
21330a96aa3bSJed Brown                                               102, 108, 112, 123,
21340a96aa3bSJed Brown                                                    103,      113,
21350a96aa3bSJed Brown                                                         104, 109,
21360a96aa3bSJed Brown                                                              105};
21370a96aa3bSJed Brown     PetscInt ident[125] = {0, 0, 0, 0, 0, 0, 0, 0,
21380a96aa3bSJed Brown                            1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6,
21390a96aa3bSJed Brown                            0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
21400a96aa3bSJed Brown                            7, 7, 8, 8, 9, 9, 10, 10, 11, 11, 12, 12, 13, 13, 14, 14, 15, 15, 16, 16, 17, 17, 18, 18,
21410a96aa3bSJed Brown                            1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6,
21420a96aa3bSJed Brown                            0, 0, 0, 0, 0, 0,
21430a96aa3bSJed Brown                            19, 20, 21, 22, 23, 24, 25, 26,
21440a96aa3bSJed Brown                            7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,
21450a96aa3bSJed Brown                            1, 2, 3, 4, 5, 6,
21460a96aa3bSJed Brown                            0};
21470a96aa3bSJed Brown 
21480a96aa3bSJed Brown #endif
21490a96aa3bSJed Brown     IS permIS;
21500a96aa3bSJed Brown     DM dmPerm;
21510a96aa3bSJed Brown 
21529566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF,nPoints,perm,PETSC_USE_POINTER,&permIS));
21539566063dSJacob Faibussowitsch     PetscCall(DMPlexPermute(dmRefined,permIS,&dmPerm));
21540a96aa3bSJed Brown     if (dmPerm) {
21559566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&dmRefined));
21560a96aa3bSJed Brown       dmRefined = dmPerm;
21570a96aa3bSJed Brown     }
21589566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&permIS));
21590a96aa3bSJed Brown     {
21600a96aa3bSJed Brown       PetscInt p;
21619566063dSJacob Faibussowitsch       PetscCall(DMCreateLabel(dmRoot,"identity"));
21629566063dSJacob Faibussowitsch       PetscCall(DMCreateLabel(dmRefined,"identity"));
21630a96aa3bSJed Brown       for (p = 0; p < P4EST_INSUL; p++) {
21649566063dSJacob Faibussowitsch         PetscCall(DMSetLabelValue(dmRoot,"identity",p,p));
21650a96aa3bSJed Brown       }
21660a96aa3bSJed Brown       for (p = 0; p < nPoints; p++) {
21679566063dSJacob Faibussowitsch         PetscCall(DMSetLabelValue(dmRefined,"identity",p,ident[p]));
21680a96aa3bSJed Brown       }
21690a96aa3bSJed Brown     }
21700a96aa3bSJed Brown   }
21719566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateReferenceTree_Union(dmRoot,dmRefined,"identity",dm));
21720a96aa3bSJed Brown   mesh                   = (DM_Plex*) (*dm)->data;
21730a96aa3bSJed Brown   mesh->getchildsymmetry = DMReferenceTreeGetChildSymmetry_pforest;
21749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
21750a96aa3bSJed Brown   if (rank == 0) {
21769566063dSJacob Faibussowitsch     PetscCall(DMViewFromOptions(dmRoot,   NULL,"-dm_p4est_ref_root_view"));
21779566063dSJacob Faibussowitsch     PetscCall(DMViewFromOptions(dmRefined,NULL,"-dm_p4est_ref_refined_view"));
21789566063dSJacob Faibussowitsch     PetscCall(DMViewFromOptions(dmRefined,NULL,"-dm_p4est_ref_tree_view"));
21790a96aa3bSJed Brown   }
21809566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dmRefined));
21819566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dmRoot));
2182792fecdfSBarry Smith   PetscCallP4est(p4est_destroy,(refined));
2183792fecdfSBarry Smith   PetscCallP4est(p4est_destroy,(root));
2184792fecdfSBarry Smith   PetscCallP4est(p4est_connectivity_destroy,(refcube));
21850a96aa3bSJed Brown   PetscFunctionReturn(0);
21860a96aa3bSJed Brown }
21870a96aa3bSJed Brown 
21880a96aa3bSJed Brown static PetscErrorCode DMShareDiscretization(DM dmA, DM dmB)
21890a96aa3bSJed Brown {
21900a96aa3bSJed Brown   void          *ctx;
21910a96aa3bSJed Brown   PetscInt       num;
21920a96aa3bSJed Brown   PetscReal      val;
21930a96aa3bSJed Brown 
21940a96aa3bSJed Brown   PetscFunctionBegin;
21959566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dmA,&ctx));
21969566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(dmB,ctx));
21979566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dmA,dmB));
21989566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dmA,&num,&val));
21999566063dSJacob Faibussowitsch   PetscCall(DMSetOutputSequenceNumber(dmB,num,val));
22000a96aa3bSJed Brown   if (dmB->localSection != dmA->localSection || dmB->globalSection != dmA->globalSection) {
22019566063dSJacob Faibussowitsch     PetscCall(DMClearLocalVectors(dmB));
22029566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->localSection));
22039566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&(dmB->localSection)));
22040a96aa3bSJed Brown     dmB->localSection = dmA->localSection;
22059566063dSJacob Faibussowitsch     PetscCall(DMClearGlobalVectors(dmB));
22069566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->globalSection));
22079566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&(dmB->globalSection)));
22080a96aa3bSJed Brown     dmB->globalSection = dmA->globalSection;
22099566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.section));
22109566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&(dmB->defaultConstraint.section)));
22113b8ba7d1SJed Brown     dmB->defaultConstraint.section = dmA->defaultConstraint.section;
22129566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.mat));
22139566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&(dmB->defaultConstraint.mat)));
22143b8ba7d1SJed Brown     dmB->defaultConstraint.mat = dmA->defaultConstraint.mat;
22159566063dSJacob Faibussowitsch     if (dmA->map) PetscCall(PetscLayoutReference(dmA->map, &dmB->map));
22160a96aa3bSJed Brown   }
22170a96aa3bSJed Brown   if (dmB->sectionSF != dmA->sectionSF) {
22189566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dmA->sectionSF));
22199566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&dmB->sectionSF));
22200a96aa3bSJed Brown     dmB->sectionSF = dmA->sectionSF;
22210a96aa3bSJed Brown   }
22220a96aa3bSJed Brown   PetscFunctionReturn(0);
22230a96aa3bSJed Brown }
22240a96aa3bSJed Brown 
22250a96aa3bSJed Brown /* Get an SF that broadcasts a coarse-cell covering of the local fine cells */
22260a96aa3bSJed Brown static PetscErrorCode DMPforestGetCellCoveringSF(MPI_Comm comm,p4est_t *p4estC, p4est_t *p4estF, PetscInt cStart, PetscInt cEnd, PetscSF *coveringSF)
22270a96aa3bSJed Brown {
22280a96aa3bSJed Brown   PetscInt       startF, endF, startC, endC, p, nLeaves;
22290a96aa3bSJed Brown   PetscSFNode    *leaves;
22300a96aa3bSJed Brown   PetscSF        sf;
22310a96aa3bSJed Brown   PetscInt       *recv, *send;
22320a96aa3bSJed Brown   PetscMPIInt    tag;
22330a96aa3bSJed Brown   MPI_Request    *recvReqs, *sendReqs;
22340a96aa3bSJed Brown   PetscSection   section;
22350a96aa3bSJed Brown 
22360a96aa3bSJed Brown   PetscFunctionBegin;
22379566063dSJacob Faibussowitsch   PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize,p4estC->mpirank,p4estF,p4estC,&startC,&endC));
22389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(2*(endC-startC),&recv,endC-startC,&recvReqs));
22399566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tag));
22400a96aa3bSJed Brown   for (p = startC; p < endC; p++) {
22410a96aa3bSJed Brown     recvReqs[p-startC] = MPI_REQUEST_NULL; /* just in case we don't initiate a receive */
22420a96aa3bSJed Brown     if (p4estC->global_first_quadrant[p] == p4estC->global_first_quadrant[p+1]) { /* empty coarse partition */
22430a96aa3bSJed Brown       recv[2*(p-startC)]   = 0;
22440a96aa3bSJed Brown       recv[2*(p-startC)+1] = 0;
22450a96aa3bSJed Brown       continue;
22460a96aa3bSJed Brown     }
22470a96aa3bSJed Brown 
22489566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(&recv[2*(p-startC)],2,MPIU_INT,p,tag,comm,&recvReqs[p-startC]));
22490a96aa3bSJed Brown   }
22509566063dSJacob Faibussowitsch   PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize,p4estC->mpirank,p4estC,p4estF,&startF,&endF));
22519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(2*(endF-startF),&send,endF-startF,&sendReqs));
22520a96aa3bSJed Brown   /* count the quadrants rank will send to each of [startF,endF) */
22530a96aa3bSJed Brown   for (p = startF; p < endF; p++) {
22540a96aa3bSJed Brown     p4est_quadrant_t *myFineStart = &p4estF->global_first_position[p];
22550a96aa3bSJed Brown     p4est_quadrant_t *myFineEnd   = &p4estF->global_first_position[p+1];
22560a96aa3bSJed Brown     PetscInt         tStart       = (PetscInt) myFineStart->p.which_tree;
22570a96aa3bSJed Brown     PetscInt         tEnd         = (PetscInt) myFineEnd->p.which_tree;
22580a96aa3bSJed Brown     PetscInt         firstCell    = -1, lastCell = -1;
22590a96aa3bSJed Brown     p4est_tree_t     *treeStart   = &(((p4est_tree_t*) p4estC->trees->array)[tStart]);
22600a96aa3bSJed Brown     p4est_tree_t     *treeEnd     = (size_t) tEnd < p4estC->trees->elem_count ? &(((p4est_tree_t*) p4estC->trees->array)[tEnd]) : NULL;
22610a96aa3bSJed Brown     ssize_t          overlapIndex;
22620a96aa3bSJed Brown 
22630a96aa3bSJed Brown     sendReqs[p-startF] = MPI_REQUEST_NULL; /* just in case we don't initiate a send */
22640a96aa3bSJed Brown     if (p4estF->global_first_quadrant[p] == p4estF->global_first_quadrant[p+1]) continue;
22650a96aa3bSJed Brown 
22660a96aa3bSJed Brown     /* locate myFineStart in (or before) a cell */
22670a96aa3bSJed Brown     if (treeStart->quadrants.elem_count) {
2268792fecdfSBarry Smith       PetscCallP4estReturn(overlapIndex,sc_array_bsearch,(&(treeStart->quadrants),myFineStart,p4est_quadrant_disjoint));
22690a96aa3bSJed Brown       if (overlapIndex < 0) {
22700a96aa3bSJed Brown         firstCell = 0;
22710a96aa3bSJed Brown       } else {
22720a96aa3bSJed Brown         firstCell = treeStart->quadrants_offset + overlapIndex;
22730a96aa3bSJed Brown       }
22740a96aa3bSJed Brown     } else {
22750a96aa3bSJed Brown       firstCell = 0;
22760a96aa3bSJed Brown     }
22770a96aa3bSJed Brown     if (treeEnd && treeEnd->quadrants.elem_count) {
2278792fecdfSBarry Smith       PetscCallP4estReturn(overlapIndex,sc_array_bsearch,(&(treeEnd->quadrants),myFineEnd,p4est_quadrant_disjoint));
22790a96aa3bSJed Brown       if (overlapIndex < 0) { /* all of this local section is overlapped */
22800a96aa3bSJed Brown         lastCell = p4estC->local_num_quadrants;
22810a96aa3bSJed Brown       } else {
22820a96aa3bSJed Brown         p4est_quadrant_t *container = &(((p4est_quadrant_t*) treeEnd->quadrants.array)[overlapIndex]);
22830a96aa3bSJed Brown         p4est_quadrant_t first_desc;
22840a96aa3bSJed Brown         int              equal;
22850a96aa3bSJed Brown 
2286792fecdfSBarry Smith         PetscCallP4est(p4est_quadrant_first_descendant,(container,&first_desc,P4EST_QMAXLEVEL));
2287792fecdfSBarry Smith         PetscCallP4estReturn(equal,p4est_quadrant_is_equal,(myFineEnd,&first_desc));
22880a96aa3bSJed Brown         if (equal) {
22890a96aa3bSJed Brown           lastCell = treeEnd->quadrants_offset + overlapIndex;
22900a96aa3bSJed Brown         } else {
22910a96aa3bSJed Brown           lastCell = treeEnd->quadrants_offset + overlapIndex + 1;
22920a96aa3bSJed Brown         }
22930a96aa3bSJed Brown       }
22940a96aa3bSJed Brown     } else {
22950a96aa3bSJed Brown       lastCell = p4estC->local_num_quadrants;
22960a96aa3bSJed Brown     }
22970a96aa3bSJed Brown     send[2*(p-startF)]   = firstCell;
22980a96aa3bSJed Brown     send[2*(p-startF)+1] = lastCell - firstCell;
22999566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(&send[2*(p-startF)],2,MPIU_INT,p,tag,comm,&sendReqs[p-startF]));
23000a96aa3bSJed Brown   }
23019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Waitall((PetscMPIInt)(endC-startC),recvReqs,MPI_STATUSES_IGNORE));
23029566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF,&section));
23039566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(section,startC,endC));
23040a96aa3bSJed Brown   for (p = startC; p < endC; p++) {
23050a96aa3bSJed Brown     PetscInt numCells = recv[2*(p-startC)+1];
23069566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetDof(section,p,numCells));
23070a96aa3bSJed Brown   }
23089566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(section));
23099566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(section,&nLeaves));
23109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nLeaves,&leaves));
23110a96aa3bSJed Brown   for (p = startC; p < endC; p++) {
23120a96aa3bSJed Brown     PetscInt firstCell = recv[2*(p-startC)];
23130a96aa3bSJed Brown     PetscInt numCells  = recv[2*(p-startC)+1];
23140a96aa3bSJed Brown     PetscInt off, i;
23150a96aa3bSJed Brown 
23169566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(section,p,&off));
23170a96aa3bSJed Brown     for (i = 0; i < numCells; i++) {
23180a96aa3bSJed Brown       leaves[off+i].rank  = p;
23190a96aa3bSJed Brown       leaves[off+i].index = firstCell + i;
23200a96aa3bSJed Brown     }
23210a96aa3bSJed Brown   }
23229566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm,&sf));
23239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf,cEnd-cStart,nLeaves,NULL,PETSC_OWN_POINTER,leaves,PETSC_OWN_POINTER));
23249566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&section));
23259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Waitall((PetscMPIInt)(endF-startF),sendReqs,MPI_STATUSES_IGNORE));
23269566063dSJacob Faibussowitsch   PetscCall(PetscFree2(send,sendReqs));
23279566063dSJacob Faibussowitsch   PetscCall(PetscFree2(recv,recvReqs));
23280a96aa3bSJed Brown   *coveringSF = sf;
23290a96aa3bSJed Brown   PetscFunctionReturn(0);
23300a96aa3bSJed Brown }
23310a96aa3bSJed Brown 
23320a96aa3bSJed Brown /* closure points for locally-owned cells */
23330a96aa3bSJed Brown static PetscErrorCode DMPforestGetCellSFNodes(DM dm, PetscInt numClosureIndices, PetscInt *numClosurePoints, PetscSFNode **closurePoints,PetscBool redirect)
23340a96aa3bSJed Brown {
23350a96aa3bSJed Brown   PetscInt          cStart, cEnd;
23360a96aa3bSJed Brown   PetscInt          count, c;
23370a96aa3bSJed Brown   PetscMPIInt       rank;
23380a96aa3bSJed Brown   PetscInt          closureSize = -1;
23390a96aa3bSJed Brown   PetscInt          *closure    = NULL;
23400a96aa3bSJed Brown   PetscSF           pointSF;
23410a96aa3bSJed Brown   PetscInt          nleaves, nroots;
23420a96aa3bSJed Brown   const PetscInt    *ilocal;
23430a96aa3bSJed Brown   const PetscSFNode *iremote;
23440a96aa3bSJed Brown   DM                plex;
23450a96aa3bSJed Brown   DM_Forest         *forest;
23460a96aa3bSJed Brown   DM_Forest_pforest *pforest;
23470a96aa3bSJed Brown 
23480a96aa3bSJed Brown   PetscFunctionBegin;
23490a96aa3bSJed Brown   forest            = (DM_Forest *) dm->data;
23500a96aa3bSJed Brown   pforest           = (DM_Forest_pforest *) forest->data;
23510a96aa3bSJed Brown   cStart            = pforest->cLocalStart;
23520a96aa3bSJed Brown   cEnd              = pforest->cLocalEnd;
23539566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
23549566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm,&pointSF));
23559566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(pointSF,&nroots,&nleaves,&ilocal,&iremote));
23560a96aa3bSJed Brown   nleaves           = PetscMax(0,nleaves);
23570a96aa3bSJed Brown   nroots            = PetscMax(0,nroots);
23580a96aa3bSJed Brown   *numClosurePoints = numClosureIndices * (cEnd - cStart);
23599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(*numClosurePoints,closurePoints));
23609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank));
23610a96aa3bSJed Brown   for (c = cStart, count = 0; c < cEnd; c++) {
23620a96aa3bSJed Brown     PetscInt i;
23639566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(plex,c,PETSC_TRUE,&closureSize,&closure));
23640a96aa3bSJed Brown 
23650a96aa3bSJed Brown     for (i = 0; i < numClosureIndices; i++, count++) {
23660a96aa3bSJed Brown       PetscInt p   = closure[2 * i];
23670a96aa3bSJed Brown       PetscInt loc = -1;
23680a96aa3bSJed Brown 
23699566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(p,nleaves,ilocal,&loc));
23700a96aa3bSJed Brown       if (redirect && loc >= 0) {
23710a96aa3bSJed Brown         (*closurePoints)[count].rank  = iremote[loc].rank;
23720a96aa3bSJed Brown         (*closurePoints)[count].index = iremote[loc].index;
23730a96aa3bSJed Brown       } else {
23740a96aa3bSJed Brown         (*closurePoints)[count].rank  = rank;
23750a96aa3bSJed Brown         (*closurePoints)[count].index = p;
23760a96aa3bSJed Brown       }
23770a96aa3bSJed Brown     }
23789566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(plex,c,PETSC_TRUE,&closureSize,&closure));
23790a96aa3bSJed Brown   }
23800a96aa3bSJed Brown   PetscFunctionReturn(0);
23810a96aa3bSJed Brown }
23820a96aa3bSJed Brown 
23830a96aa3bSJed Brown static void MPIAPI DMPforestMaxSFNode(void *a, void *b, PetscMPIInt *len, MPI_Datatype *type)
23840a96aa3bSJed Brown {
23850a96aa3bSJed Brown   PetscMPIInt i;
23860a96aa3bSJed Brown 
23870a96aa3bSJed Brown   for (i = 0; i < *len; i++) {
23880a96aa3bSJed Brown     PetscSFNode *A = (PetscSFNode*)a;
23890a96aa3bSJed Brown     PetscSFNode *B = (PetscSFNode*)b;
23900a96aa3bSJed Brown 
23910a96aa3bSJed Brown     if (B->rank < 0) *B = *A;
23920a96aa3bSJed Brown   }
23930a96aa3bSJed Brown }
23940a96aa3bSJed Brown 
23950a96aa3bSJed Brown static PetscErrorCode DMPforestGetTransferSF_Point(DM coarse, DM fine, PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[])
23960a96aa3bSJed Brown {
23970a96aa3bSJed Brown   MPI_Comm          comm;
23980a96aa3bSJed Brown   PetscMPIInt       rank, size;
23990a96aa3bSJed Brown   DM_Forest_pforest *pforestC, *pforestF;
24000a96aa3bSJed Brown   p4est_t           *p4estC, *p4estF;
24010a96aa3bSJed Brown   PetscInt          numClosureIndices;
24020a96aa3bSJed Brown   PetscInt          numClosurePointsC, numClosurePointsF;
24030a96aa3bSJed Brown   PetscSFNode       *closurePointsC, *closurePointsF;
24040a96aa3bSJed Brown   p4est_quadrant_t  *coverQuads = NULL;
24050a96aa3bSJed Brown   p4est_quadrant_t  **treeQuads;
24060a96aa3bSJed Brown   PetscInt          *treeQuadCounts;
24070a96aa3bSJed Brown   MPI_Datatype      nodeType;
24080a96aa3bSJed Brown   MPI_Datatype      nodeClosureType;
24090a96aa3bSJed Brown   MPI_Op            sfNodeReduce;
24100a96aa3bSJed Brown   p4est_topidx_t    fltF, lltF, t;
24110a96aa3bSJed Brown   DM                plexC, plexF;
24120a96aa3bSJed Brown   PetscInt          pStartF, pEndF, pStartC, pEndC;
24130a96aa3bSJed Brown   PetscBool         saveInCoarse = PETSC_FALSE;
24140a96aa3bSJed Brown   PetscBool         saveInFine   = PETSC_FALSE;
24150a96aa3bSJed Brown   PetscBool         formCids     = (childIds != NULL) ? PETSC_TRUE : PETSC_FALSE;
24160a96aa3bSJed Brown   PetscInt          *cids        = NULL;
24170a96aa3bSJed Brown 
24180a96aa3bSJed Brown   PetscFunctionBegin;
24190a96aa3bSJed Brown   pforestC = (DM_Forest_pforest*) ((DM_Forest*) coarse->data)->data;
24200a96aa3bSJed Brown   pforestF = (DM_Forest_pforest*) ((DM_Forest*) fine->data)->data;
24210a96aa3bSJed Brown   p4estC   = pforestC->forest;
24220a96aa3bSJed Brown   p4estF   = pforestF->forest;
242308401ef6SPierre Jolivet   PetscCheck(pforestC->topo == pforestF->topo,PetscObjectComm((PetscObject)coarse),PETSC_ERR_ARG_INCOMP,"DM's must have the same base DM");
24240a96aa3bSJed Brown   comm = PetscObjectComm((PetscObject)coarse);
24259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
24269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
24279566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(fine,&plexF));
24289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexF,&pStartF,&pEndF));
24299566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(coarse,&plexC));
24309566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexC,&pStartC,&pEndC));
24310a96aa3bSJed Brown   { /* check if the results have been cached */
24320a96aa3bSJed Brown     DM adaptCoarse, adaptFine;
24330a96aa3bSJed Brown 
24349566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityForest(coarse,&adaptCoarse));
24359566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityForest(fine,&adaptFine));
24360a96aa3bSJed Brown     if (adaptCoarse && adaptCoarse->data == fine->data) { /* coarse is adapted from fine */
24370a96aa3bSJed Brown       if (pforestC->pointSelfToAdaptSF) {
24389566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)(pforestC->pointSelfToAdaptSF)));
24390a96aa3bSJed Brown         *sf  = pforestC->pointSelfToAdaptSF;
24400a96aa3bSJed Brown         if (childIds) {
24419566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(pEndF-pStartF,&cids));
24429566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(cids,pforestC->pointSelfToAdaptCids,pEndF-pStartF));
24430a96aa3bSJed Brown           *childIds = cids;
24440a96aa3bSJed Brown         }
24450a96aa3bSJed Brown         PetscFunctionReturn(0);
24460a96aa3bSJed Brown       } else {
24470a96aa3bSJed Brown         saveInCoarse = PETSC_TRUE;
24480a96aa3bSJed Brown         formCids     = PETSC_TRUE;
24490a96aa3bSJed Brown       }
24500a96aa3bSJed Brown     } else if (adaptFine && adaptFine->data == coarse->data) { /* fine is adapted from coarse */
24510a96aa3bSJed Brown       if (pforestF->pointAdaptToSelfSF) {
24529566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)(pforestF->pointAdaptToSelfSF)));
24530a96aa3bSJed Brown         *sf  = pforestF->pointAdaptToSelfSF;
24540a96aa3bSJed Brown         if (childIds) {
24559566063dSJacob Faibussowitsch           PetscCall(PetscMalloc1(pEndF-pStartF,&cids));
24569566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(cids,pforestF->pointAdaptToSelfCids,pEndF-pStartF));
24570a96aa3bSJed Brown           *childIds = cids;
24580a96aa3bSJed Brown         }
24590a96aa3bSJed Brown         PetscFunctionReturn(0);
24600a96aa3bSJed Brown       } else {
24610a96aa3bSJed Brown         saveInFine = PETSC_TRUE;
24620a96aa3bSJed Brown         formCids   = PETSC_TRUE;
24630a96aa3bSJed Brown       }
24640a96aa3bSJed Brown     }
24650a96aa3bSJed Brown   }
24660a96aa3bSJed Brown 
24670a96aa3bSJed Brown   /* count the number of closure points that have dofs and create a list */
24680a96aa3bSJed Brown   numClosureIndices = P4EST_INSUL;
24690a96aa3bSJed Brown   /* create the datatype */
24709566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(2,MPIU_INT,&nodeType));
24719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&nodeType));
24729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Op_create(DMPforestMaxSFNode,PETSC_FALSE,&sfNodeReduce));
24739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_contiguous(numClosureIndices*2,MPIU_INT,&nodeClosureType));
24749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_commit(&nodeClosureType));
24750a96aa3bSJed Brown   /* everything has to go through cells: for each cell, create a list of the sfnodes in its closure */
24760a96aa3bSJed Brown   /* get lists of closure point SF nodes for every cell */
24779566063dSJacob Faibussowitsch   PetscCall(DMPforestGetCellSFNodes(coarse,numClosureIndices,&numClosurePointsC,&closurePointsC,PETSC_TRUE));
24789566063dSJacob Faibussowitsch   PetscCall(DMPforestGetCellSFNodes(fine  ,numClosureIndices,&numClosurePointsF,&closurePointsF,PETSC_FALSE));
24790a96aa3bSJed Brown   /* create pointers for tree lists */
24800a96aa3bSJed Brown   fltF = p4estF->first_local_tree;
24810a96aa3bSJed Brown   lltF = p4estF->last_local_tree;
24829566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(lltF + 1  - fltF, &treeQuads, lltF + 1 - fltF, &treeQuadCounts));
24830a96aa3bSJed Brown   /* if the partitions don't match, ship the coarse to cover the fine */
24840a96aa3bSJed Brown   if (size > 1) {
24850a96aa3bSJed Brown     PetscInt p;
24860a96aa3bSJed Brown 
24870a96aa3bSJed Brown     for (p = 0; p < size; p++) {
24880a96aa3bSJed Brown       int equal;
24890a96aa3bSJed Brown 
2490792fecdfSBarry Smith       PetscCallP4estReturn(equal,p4est_quadrant_is_equal_piggy,(&p4estC->global_first_position[p],&p4estF->global_first_position[p]));
24910a96aa3bSJed Brown       if (!equal) break;
24920a96aa3bSJed Brown     }
24930a96aa3bSJed Brown     if (p < size) { /* non-matching distribution: send the coarse to cover the fine */
24940a96aa3bSJed Brown       PetscInt         cStartC, cEndC;
24950a96aa3bSJed Brown       PetscSF          coveringSF;
24960a96aa3bSJed Brown       PetscInt         nleaves;
24970a96aa3bSJed Brown       PetscInt         count;
24980a96aa3bSJed Brown       PetscSFNode      *newClosurePointsC;
24990a96aa3bSJed Brown       p4est_quadrant_t *coverQuadsSend;
25000a96aa3bSJed Brown       p4est_topidx_t   fltC = p4estC->first_local_tree;
25010a96aa3bSJed Brown       p4est_topidx_t   lltC = p4estC->last_local_tree;
25020a96aa3bSJed Brown       p4est_topidx_t   t;
25030a96aa3bSJed Brown       PetscMPIInt      blockSizes[4]   = {P4EST_DIM,2,1,1};
25040a96aa3bSJed Brown       MPI_Aint         blockOffsets[4] = {offsetof(p4est_quadrant_t,x),
25050a96aa3bSJed Brown                                           offsetof(p4est_quadrant_t,level),
25060a96aa3bSJed Brown                                           offsetof(p4est_quadrant_t,pad16),
25070a96aa3bSJed Brown                                           offsetof(p4est_quadrant_t,p)};
25080a96aa3bSJed Brown       MPI_Datatype     blockTypes[4] = {MPI_INT32_T,MPI_INT8_T,MPI_INT16_T,MPI_INT32_T/* p.which_tree */};
25090a96aa3bSJed Brown       MPI_Datatype     quadStruct,quadType;
25100a96aa3bSJed Brown 
25119566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(plexC,0,&cStartC,&cEndC));
25129566063dSJacob Faibussowitsch       PetscCall(DMPforestGetCellCoveringSF(comm,p4estC,p4estF,pforestC->cLocalStart,pforestC->cLocalEnd,&coveringSF));
25139566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coveringSF,NULL,&nleaves,NULL,NULL));
25149566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numClosureIndices*nleaves,&newClosurePointsC));
25159566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nleaves,&coverQuads));
25169566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(cEndC-cStartC,&coverQuadsSend));
25170a96aa3bSJed Brown       count = 0;
25180a96aa3bSJed Brown       for (t = fltC; t <= lltC; t++) { /* unfortunately, we need to pack a send array, since quads are not stored packed in p4est */
25190a96aa3bSJed Brown         p4est_tree_t *tree = &(((p4est_tree_t*) p4estC->trees->array)[t]);
25200a96aa3bSJed Brown         PetscInt     q;
25210a96aa3bSJed Brown 
25229566063dSJacob Faibussowitsch         PetscCall(PetscMemcpy(&coverQuadsSend[count],tree->quadrants.array,tree->quadrants.elem_count * sizeof(p4est_quadrant_t)));
25230a96aa3bSJed Brown         for (q = 0; (size_t) q < tree->quadrants.elem_count; q++) coverQuadsSend[count+q].p.which_tree = t;
25240a96aa3bSJed Brown         count += tree->quadrants.elem_count;
25250a96aa3bSJed Brown       }
25260a96aa3bSJed Brown       /* p is of a union type p4est_quadrant_data, but only the p.which_tree field is active at this time. So, we
25270a96aa3bSJed Brown          have a simple blockTypes[] to use. Note that quadStruct does not count potential padding in array of
25280a96aa3bSJed Brown          p4est_quadrant_t. We have to call MPI_Type_create_resized() to change upper-bound of quadStruct.
25290a96aa3bSJed Brown        */
25309566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_create_struct(4,blockSizes,blockOffsets,blockTypes,&quadStruct));
25319566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_create_resized(quadStruct,0,sizeof(p4est_quadrant_t),&quadType));
25329566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_commit(&quadType));
25339566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(coveringSF,nodeClosureType,closurePointsC,newClosurePointsC,MPI_REPLACE));
25349566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(coveringSF,quadType,coverQuadsSend,coverQuads,MPI_REPLACE));
25359566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(coveringSF,nodeClosureType,closurePointsC,newClosurePointsC,MPI_REPLACE));
25369566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(coveringSF,quadType,coverQuadsSend,coverQuads,MPI_REPLACE));
25379566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_free(&quadStruct));
25389566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Type_free(&quadType));
25399566063dSJacob Faibussowitsch       PetscCall(PetscFree(coverQuadsSend));
25409566063dSJacob Faibussowitsch       PetscCall(PetscFree(closurePointsC));
25419566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coveringSF));
25420a96aa3bSJed Brown       closurePointsC = newClosurePointsC;
25430a96aa3bSJed Brown 
25440a96aa3bSJed Brown       /* assign tree quads based on locations in coverQuads */
25450a96aa3bSJed Brown       {
25460a96aa3bSJed Brown         PetscInt q;
25470a96aa3bSJed Brown         for (q = 0; q < nleaves; q++) {
25480a96aa3bSJed Brown           p4est_locidx_t t = coverQuads[q].p.which_tree;
25490a96aa3bSJed Brown           if (!treeQuadCounts[t-fltF]++) treeQuads[t-fltF] = &coverQuads[q];
25500a96aa3bSJed Brown         }
25510a96aa3bSJed Brown       }
25520a96aa3bSJed Brown     }
25530a96aa3bSJed Brown   }
25540a96aa3bSJed Brown   if (!coverQuads) { /* matching partitions: assign tree quads based on locations in p4est native arrays */
25550a96aa3bSJed Brown     for (t = fltF; t <= lltF; t++) {
25560a96aa3bSJed Brown       p4est_tree_t *tree = &(((p4est_tree_t*) p4estC->trees->array)[t]);
25570a96aa3bSJed Brown 
25580a96aa3bSJed Brown       treeQuadCounts[t - fltF] = tree->quadrants.elem_count;
25590a96aa3bSJed Brown       treeQuads[t - fltF]      = (p4est_quadrant_t*) tree->quadrants.array;
25600a96aa3bSJed Brown     }
25610a96aa3bSJed Brown   }
25620a96aa3bSJed Brown 
25630a96aa3bSJed Brown   {
25640a96aa3bSJed Brown     PetscInt    p;
25650a96aa3bSJed Brown     PetscInt    cLocalStartF;
25660a96aa3bSJed Brown     PetscSF     pointSF;
25670a96aa3bSJed Brown     PetscSFNode *roots;
25680a96aa3bSJed Brown     PetscInt    *rootType;
25690a96aa3bSJed Brown     DM          refTree = NULL;
25700a96aa3bSJed Brown     DMLabel     canonical;
25710a96aa3bSJed Brown     PetscInt    *childClosures[P4EST_CHILDREN] = {NULL};
25720a96aa3bSJed Brown     PetscInt    *rootClosure                   = NULL;
25730a96aa3bSJed Brown     PetscInt    coarseOffset;
25740a96aa3bSJed Brown     PetscInt    numCoarseQuads;
25750a96aa3bSJed Brown 
25769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(pEndF-pStartF,&roots));
25779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(pEndF-pStartF,&rootType));
25789566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(fine,&pointSF));
25790a96aa3bSJed Brown     for (p = pStartF; p < pEndF; p++) {
25800a96aa3bSJed Brown       roots[p-pStartF].rank  = -1;
25810a96aa3bSJed Brown       roots[p-pStartF].index = -1;
25820a96aa3bSJed Brown       rootType[p-pStartF]    = -1;
25830a96aa3bSJed Brown     }
25840a96aa3bSJed Brown     if (formCids) {
25850a96aa3bSJed Brown       PetscInt child;
25860a96aa3bSJed Brown 
25879566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF-pStartF,&cids));
25880a96aa3bSJed Brown       for (p = pStartF; p < pEndF; p++) cids[p - pStartF] = -2;
25899566063dSJacob Faibussowitsch       PetscCall(DMPlexGetReferenceTree(plexF,&refTree));
25909566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(refTree,0,PETSC_TRUE,NULL,&rootClosure));
25910a96aa3bSJed Brown       for (child = 0; child < P4EST_CHILDREN; child++) { /* get the closures of the child cells in the reference tree */
25929566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(refTree,child+1,PETSC_TRUE,NULL,&childClosures[child]));
25930a96aa3bSJed Brown       }
25949566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(refTree,"canonical",&canonical));
25950a96aa3bSJed Brown     }
25960a96aa3bSJed Brown     cLocalStartF = pforestF->cLocalStart;
25970a96aa3bSJed Brown     for (t = fltF, coarseOffset = 0, numCoarseQuads = 0; t <= lltF; t++, coarseOffset += numCoarseQuads) {
25980a96aa3bSJed Brown       p4est_tree_t     *tree        = &(((p4est_tree_t*) p4estF->trees->array)[t]);
25990a96aa3bSJed Brown       PetscInt         numFineQuads = tree->quadrants.elem_count;
26000a96aa3bSJed Brown       p4est_quadrant_t *coarseQuads = treeQuads[t - fltF];
26010a96aa3bSJed Brown       p4est_quadrant_t *fineQuads   = (p4est_quadrant_t*) tree->quadrants.array;
26020a96aa3bSJed Brown       PetscInt         i, coarseCount = 0;
26030a96aa3bSJed Brown       PetscInt         offset = tree->quadrants_offset;
26040a96aa3bSJed Brown       sc_array_t       coarseQuadsArray;
26050a96aa3bSJed Brown 
26060a96aa3bSJed Brown       numCoarseQuads = treeQuadCounts[t - fltF];
2607792fecdfSBarry Smith       PetscCallP4est(sc_array_init_data,(&coarseQuadsArray,coarseQuads,sizeof(p4est_quadrant_t),(size_t) numCoarseQuads));
26080a96aa3bSJed Brown       for (i = 0; i < numFineQuads; i++) {
26090a96aa3bSJed Brown         PetscInt         c     = i + offset;
26100a96aa3bSJed Brown         p4est_quadrant_t *quad = &fineQuads[i];
26110a96aa3bSJed Brown         p4est_quadrant_t *quadCoarse = NULL;
26120a96aa3bSJed Brown         ssize_t          disjoint = -1;
26130a96aa3bSJed Brown 
26140a96aa3bSJed Brown         while (disjoint < 0 && coarseCount < numCoarseQuads) {
26150a96aa3bSJed Brown           quadCoarse = &coarseQuads[coarseCount];
2616792fecdfSBarry Smith           PetscCallP4estReturn(disjoint,p4est_quadrant_disjoint,(quadCoarse,quad));
26170a96aa3bSJed Brown           if (disjoint < 0) coarseCount++;
26180a96aa3bSJed Brown         }
261908401ef6SPierre Jolivet         PetscCheck(disjoint == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"did not find overlapping coarse quad");
26200a96aa3bSJed Brown         if (quadCoarse->level > quad->level || (quadCoarse->level == quad->level && !transferIdent)) { /* the "coarse" mesh is finer than the fine mesh at the point: continue */
26210a96aa3bSJed Brown           if (transferIdent) { /* find corners */
26220a96aa3bSJed Brown             PetscInt j = 0;
26230a96aa3bSJed Brown 
26240a96aa3bSJed Brown             do {
26250a96aa3bSJed Brown               if (j < P4EST_CHILDREN) {
26260a96aa3bSJed Brown                 p4est_quadrant_t cornerQuad;
26270a96aa3bSJed Brown                 int              equal;
26280a96aa3bSJed Brown 
2629792fecdfSBarry Smith                 PetscCallP4est(p4est_quadrant_corner_descendant,(quad,&cornerQuad,j,quadCoarse->level));
2630792fecdfSBarry Smith                 PetscCallP4estReturn(equal,p4est_quadrant_is_equal,(&cornerQuad,quadCoarse));
26310a96aa3bSJed Brown                 if (equal) {
26320a96aa3bSJed Brown                   PetscInt    petscJ = P4estVertToPetscVert[j];
26330a96aa3bSJed Brown                   PetscInt    p      = closurePointsF[numClosureIndices * c + (P4EST_INSUL - P4EST_CHILDREN) + petscJ].index;
26340a96aa3bSJed Brown                   PetscSFNode q      = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + (P4EST_INSUL - P4EST_CHILDREN) + petscJ];
26350a96aa3bSJed Brown 
26360a96aa3bSJed Brown                   roots[p-pStartF]    = q;
26370a96aa3bSJed Brown                   rootType[p-pStartF] = PETSC_MAX_INT;
26380a96aa3bSJed Brown                   cids[p-pStartF]     = -1;
26390a96aa3bSJed Brown                   j++;
26400a96aa3bSJed Brown                 }
26410a96aa3bSJed Brown               }
26420a96aa3bSJed Brown               coarseCount++;
26430a96aa3bSJed Brown               disjoint = 1;
26440a96aa3bSJed Brown               if (coarseCount < numCoarseQuads) {
26450a96aa3bSJed Brown                 quadCoarse = &coarseQuads[coarseCount];
2646792fecdfSBarry Smith                 PetscCallP4estReturn(disjoint,p4est_quadrant_disjoint,(quadCoarse,quad));
26470a96aa3bSJed Brown               }
26480a96aa3bSJed Brown             } while (!disjoint);
26490a96aa3bSJed Brown           }
26500a96aa3bSJed Brown           continue;
26510a96aa3bSJed Brown         }
26520a96aa3bSJed Brown         if (quadCoarse->level == quad->level) { /* same quad present in coarse and fine mesh */
26530a96aa3bSJed Brown           PetscInt j;
26540a96aa3bSJed Brown           for (j = 0; j < numClosureIndices; j++) {
26550a96aa3bSJed Brown             PetscInt p = closurePointsF[numClosureIndices * c + j].index;
26560a96aa3bSJed Brown 
26570a96aa3bSJed Brown             roots[p-pStartF]    = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + j];
26580a96aa3bSJed Brown             rootType[p-pStartF] = PETSC_MAX_INT; /* unconditionally accept */
26590a96aa3bSJed Brown             cids[p-pStartF]     = -1;
26600a96aa3bSJed Brown           }
26610a96aa3bSJed Brown         } else {
26620a96aa3bSJed Brown           PetscInt levelDiff = quad->level - quadCoarse->level;
26630a96aa3bSJed Brown           PetscInt proposedCids[P4EST_INSUL] = {0};
26640a96aa3bSJed Brown 
26650a96aa3bSJed Brown           if (formCids) {
26660a96aa3bSJed Brown             PetscInt cl;
26670a96aa3bSJed Brown             PetscInt *pointClosure = NULL;
26680a96aa3bSJed Brown             int      cid;
26690a96aa3bSJed Brown 
267008401ef6SPierre Jolivet             PetscCheck(levelDiff <= 1,PETSC_COMM_SELF,PETSC_ERR_USER,"Recursive child ids not implemented");
2671792fecdfSBarry Smith             PetscCallP4estReturn(cid,p4est_quadrant_child_id,(quad));
26729566063dSJacob Faibussowitsch             PetscCall(DMPlexGetTransitiveClosure(plexF,c + cLocalStartF,PETSC_TRUE,NULL,&pointClosure));
26730a96aa3bSJed Brown             for (cl = 0; cl < P4EST_INSUL; cl++) {
26740a96aa3bSJed Brown               PetscInt p      = pointClosure[2 * cl];
26750a96aa3bSJed Brown               PetscInt point  = childClosures[cid][2 * cl];
26760a96aa3bSJed Brown               PetscInt ornt   = childClosures[cid][2 * cl + 1];
26770a96aa3bSJed Brown               PetscInt newcid = -1;
26780a96aa3bSJed Brown               DMPolytopeType ct;
26790a96aa3bSJed Brown 
26800a96aa3bSJed Brown               if (rootType[p-pStartF] == PETSC_MAX_INT) continue;
26819566063dSJacob Faibussowitsch               PetscCall(DMPlexGetCellType(refTree, point, &ct));
26820a96aa3bSJed Brown               ornt = DMPolytopeConvertNewOrientation_Internal(ct, ornt);
26830a96aa3bSJed Brown               if (!cl) {
26840a96aa3bSJed Brown                 newcid = cid + 1;
26850a96aa3bSJed Brown               } else {
26860a96aa3bSJed Brown                 PetscInt rcl, parent, parentOrnt = 0;
26870a96aa3bSJed Brown 
26889566063dSJacob Faibussowitsch                 PetscCall(DMPlexGetTreeParent(refTree,point,&parent,NULL));
26890a96aa3bSJed Brown                 if (parent == point) {
26900a96aa3bSJed Brown                   newcid = -1;
26910a96aa3bSJed Brown                 } else if (!parent) { /* in the root */
26920a96aa3bSJed Brown                   newcid = point;
26930a96aa3bSJed Brown                 } else {
26940a96aa3bSJed Brown                   DMPolytopeType rct = DM_POLYTOPE_UNKNOWN;
26950a96aa3bSJed Brown 
26960a96aa3bSJed Brown                   for (rcl = 1; rcl < P4EST_INSUL; rcl++) {
26970a96aa3bSJed Brown                     if (rootClosure[2 * rcl] == parent) {
26989566063dSJacob Faibussowitsch                       PetscCall(DMPlexGetCellType(refTree, parent, &rct));
26990a96aa3bSJed Brown                       parentOrnt = DMPolytopeConvertNewOrientation_Internal(rct, rootClosure[2 * rcl + 1]);
27000a96aa3bSJed Brown                       break;
27010a96aa3bSJed Brown                     }
27020a96aa3bSJed Brown                   }
270308401ef6SPierre Jolivet                   PetscCheck(rcl < P4EST_INSUL,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Couldn't find parent in root closure");
27049566063dSJacob Faibussowitsch                   PetscCall(DMPlexReferenceTreeGetChildSymmetry(refTree,parent,parentOrnt,ornt,point,DMPolytopeConvertNewOrientation_Internal(rct, pointClosure[2 * rcl + 1]),NULL,&newcid));
27050a96aa3bSJed Brown                 }
27060a96aa3bSJed Brown               }
27070a96aa3bSJed Brown               if (newcid >= 0) {
27080a96aa3bSJed Brown 
27090a96aa3bSJed Brown                 if (canonical) {
27109566063dSJacob Faibussowitsch                   PetscCall(DMLabelGetValue(canonical,newcid,&newcid));
27110a96aa3bSJed Brown                 }
27120a96aa3bSJed Brown                 proposedCids[cl] = newcid;
27130a96aa3bSJed Brown               }
27140a96aa3bSJed Brown             }
27159566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreTransitiveClosure(plexF,c + cLocalStartF,PETSC_TRUE,NULL,&pointClosure));
27160a96aa3bSJed Brown           }
27170a96aa3bSJed Brown           p4est_qcoord_t coarseBound[2][P4EST_DIM] = {{quadCoarse->x,quadCoarse->y,
27180a96aa3bSJed Brown #if defined(P4_TO_P8)
27190a96aa3bSJed Brown                                                        quadCoarse->z
27200a96aa3bSJed Brown #endif
27210a96aa3bSJed Brown                                                       },{0}};
27220a96aa3bSJed Brown           p4est_qcoord_t fineBound[2][P4EST_DIM] = {{quad->x,quad->y,
27230a96aa3bSJed Brown #if defined(P4_TO_P8)
27240a96aa3bSJed Brown                                                      quad->z
27250a96aa3bSJed Brown #endif
27260a96aa3bSJed Brown                                                     },{0}};
27270a96aa3bSJed Brown           PetscInt       j;
27280a96aa3bSJed Brown           for (j = 0; j < P4EST_DIM; j++) { /* get the coordinates of cell boundaries in each direction */
27290a96aa3bSJed Brown             coarseBound[1][j] = coarseBound[0][j] + P4EST_QUADRANT_LEN(quadCoarse->level);
27300a96aa3bSJed Brown             fineBound[1][j]   = fineBound[0][j]   + P4EST_QUADRANT_LEN(quad->level);
27310a96aa3bSJed Brown           }
27320a96aa3bSJed Brown           for (j = 0; j < numClosureIndices; j++) {
27330a96aa3bSJed Brown             PetscInt    l, p;
27340a96aa3bSJed Brown             PetscSFNode q;
27350a96aa3bSJed Brown 
27360a96aa3bSJed Brown             p = closurePointsF[numClosureIndices * c + j].index;
27370a96aa3bSJed Brown             if (rootType[p-pStartF] == PETSC_MAX_INT) continue;
27380a96aa3bSJed Brown             if (j == 0) { /* volume: ancestor is volume */
27390a96aa3bSJed Brown               l = 0;
27400a96aa3bSJed Brown             } else if (j < 1 + P4EST_FACES) { /* facet */
27410a96aa3bSJed Brown               PetscInt face = PetscFaceToP4estFace[j - 1];
27420a96aa3bSJed Brown               PetscInt direction = face / 2;
27430a96aa3bSJed Brown               PetscInt coarseFace = -1;
27440a96aa3bSJed Brown 
27450a96aa3bSJed Brown               if (coarseBound[face % 2][direction] == fineBound[face % 2][direction]) {
27460a96aa3bSJed Brown                 coarseFace = face;
27470a96aa3bSJed Brown                 l = 1 + P4estFaceToPetscFace[coarseFace];
27480a96aa3bSJed Brown               } else {
27490a96aa3bSJed Brown                 l = 0;
27500a96aa3bSJed Brown               }
27510a96aa3bSJed Brown #if defined(P4_TO_P8)
27520a96aa3bSJed Brown             } else if (j < 1 + P4EST_FACES + P8EST_EDGES) {
27530a96aa3bSJed Brown               PetscInt  edge       = PetscEdgeToP4estEdge[j - (1 + P4EST_FACES)];
27540a96aa3bSJed Brown               PetscInt  direction  = edge / 4;
27550a96aa3bSJed Brown               PetscInt  mod        = edge % 4;
27560a96aa3bSJed Brown               PetscInt  coarseEdge = -1, coarseFace = -1;
27570a96aa3bSJed Brown               PetscInt  minDir     = PetscMin((direction + 1) % 3,(direction + 2) % 3);
27580a96aa3bSJed Brown               PetscInt  maxDir     = PetscMax((direction + 1) % 3,(direction + 2) % 3);
27590a96aa3bSJed Brown               PetscBool dirTest[2];
27600a96aa3bSJed Brown 
27610a96aa3bSJed Brown               dirTest[0] = (PetscBool) (coarseBound[mod % 2][minDir] == fineBound[mod % 2][minDir]);
27620a96aa3bSJed Brown               dirTest[1] = (PetscBool) (coarseBound[mod / 2][maxDir] == fineBound[mod / 2][maxDir]);
27630a96aa3bSJed Brown 
27640a96aa3bSJed Brown               if (dirTest[0] && dirTest[1]) { /* fine edge falls on coarse edge */
27650a96aa3bSJed Brown                 coarseEdge = edge;
27660a96aa3bSJed Brown                 l          = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge];
27670a96aa3bSJed Brown               } else if (dirTest[0]) { /* fine edge falls on a coarse face in the minDir direction */
27680a96aa3bSJed Brown                 coarseFace = 2 * minDir + (mod % 2);
27690a96aa3bSJed Brown                 l = 1 + P4estFaceToPetscFace[coarseFace];
27700a96aa3bSJed Brown               } else if (dirTest[1]) { /* fine edge falls on a coarse face in the maxDir direction */
27710a96aa3bSJed Brown                 coarseFace = 2 * maxDir + (mod / 2);
27720a96aa3bSJed Brown                 l = 1 + P4estFaceToPetscFace[coarseFace];
27730a96aa3bSJed Brown               } else {
27740a96aa3bSJed Brown                 l = 0;
27750a96aa3bSJed Brown               }
27760a96aa3bSJed Brown #endif
27770a96aa3bSJed Brown             } else {
27780a96aa3bSJed Brown               PetscInt  vertex = PetscVertToP4estVert[P4EST_CHILDREN - (P4EST_INSUL - j)];
27790a96aa3bSJed Brown               PetscBool dirTest[P4EST_DIM];
27800a96aa3bSJed Brown               PetscInt  m;
27810a96aa3bSJed Brown               PetscInt  numMatch     = 0;
27820a96aa3bSJed Brown               PetscInt  coarseVertex = -1, coarseFace = -1;
27830a96aa3bSJed Brown #if defined(P4_TO_P8)
27840a96aa3bSJed Brown               PetscInt coarseEdge = -1;
27850a96aa3bSJed Brown #endif
27860a96aa3bSJed Brown 
27870a96aa3bSJed Brown               for (m = 0; m < P4EST_DIM; m++) {
27880a96aa3bSJed Brown                 dirTest[m] = (PetscBool) (coarseBound[(vertex >> m) & 1][m] == fineBound[(vertex >> m) & 1][m]);
27890a96aa3bSJed Brown                 if (dirTest[m]) numMatch++;
27900a96aa3bSJed Brown               }
27910a96aa3bSJed Brown               if (numMatch == P4EST_DIM) { /* vertex on vertex */
27920a96aa3bSJed Brown                 coarseVertex = vertex;
27930a96aa3bSJed Brown                 l            = P4EST_INSUL - (P4EST_CHILDREN - P4estVertToPetscVert[coarseVertex]);
27940a96aa3bSJed Brown               } else if (numMatch == 1) { /* vertex on face */
27950a96aa3bSJed Brown                 for (m = 0; m < P4EST_DIM; m++) {
27960a96aa3bSJed Brown                   if (dirTest[m]) {
27970a96aa3bSJed Brown                     coarseFace = 2 * m + ((vertex >> m) & 1);
27980a96aa3bSJed Brown                     break;
27990a96aa3bSJed Brown                   }
28000a96aa3bSJed Brown                 }
28010a96aa3bSJed Brown                 l = 1 + P4estFaceToPetscFace[coarseFace];
28020a96aa3bSJed Brown #if defined(P4_TO_P8)
28030a96aa3bSJed Brown               } else if (numMatch == 2) { /* vertex on edge */
28040a96aa3bSJed Brown                 for (m = 0; m < P4EST_DIM; m++) {
28050a96aa3bSJed Brown                   if (!dirTest[m]) {
28060a96aa3bSJed Brown                     PetscInt otherDir1 = (m + 1) % 3;
28070a96aa3bSJed Brown                     PetscInt otherDir2 = (m + 2) % 3;
28080a96aa3bSJed Brown                     PetscInt minDir    = PetscMin(otherDir1,otherDir2);
28090a96aa3bSJed Brown                     PetscInt maxDir    = PetscMax(otherDir1,otherDir2);
28100a96aa3bSJed Brown 
28110a96aa3bSJed Brown                     coarseEdge = m * 4 + 2 * ((vertex >> maxDir) & 1) + ((vertex >> minDir) & 1);
28120a96aa3bSJed Brown                     break;
28130a96aa3bSJed Brown                   }
28140a96aa3bSJed Brown                 }
28150a96aa3bSJed Brown                 l = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge];
28160a96aa3bSJed Brown #endif
28170a96aa3bSJed Brown               } else { /* volume */
28180a96aa3bSJed Brown                 l = 0;
28190a96aa3bSJed Brown               }
28200a96aa3bSJed Brown             }
28210a96aa3bSJed Brown             q = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + l];
28220a96aa3bSJed Brown             if (l > rootType[p-pStartF]) {
28230a96aa3bSJed Brown               if (l >= P4EST_INSUL - P4EST_CHILDREN) { /* vertex on vertex: unconditional acceptance */
28240a96aa3bSJed Brown                 if (transferIdent) {
28250a96aa3bSJed Brown                   roots[p-pStartF] = q;
28260a96aa3bSJed Brown                   rootType[p-pStartF] = PETSC_MAX_INT;
28270a96aa3bSJed Brown                   if (formCids) cids[p-pStartF] = -1;
28280a96aa3bSJed Brown                 }
28290a96aa3bSJed Brown               } else {
28300a96aa3bSJed Brown                 PetscInt k, thisp = p, limit;
28310a96aa3bSJed Brown 
28320a96aa3bSJed Brown                 roots[p-pStartF] = q;
28330a96aa3bSJed Brown                 rootType[p-pStartF] = l;
28340a96aa3bSJed Brown                 if (formCids) cids[p - pStartF] = proposedCids[j];
28350a96aa3bSJed Brown                 limit = transferIdent ? levelDiff : (levelDiff - 1);
28360a96aa3bSJed Brown                 for (k = 0; k < limit; k++) {
28370a96aa3bSJed Brown                   PetscInt parent;
28380a96aa3bSJed Brown 
28399566063dSJacob Faibussowitsch                   PetscCall(DMPlexGetTreeParent(plexF,thisp,&parent,NULL));
28400a96aa3bSJed Brown                   if (parent == thisp) break;
28410a96aa3bSJed Brown 
28420a96aa3bSJed Brown                   roots[parent-pStartF] = q;
28430a96aa3bSJed Brown                   rootType[parent-pStartF] = PETSC_MAX_INT;
28440a96aa3bSJed Brown                   if (formCids) cids[parent-pStartF] = -1;
28450a96aa3bSJed Brown                   thisp = parent;
28460a96aa3bSJed Brown                 }
28470a96aa3bSJed Brown               }
28480a96aa3bSJed Brown             }
28490a96aa3bSJed Brown           }
28500a96aa3bSJed Brown         }
28510a96aa3bSJed Brown       }
28520a96aa3bSJed Brown     }
28530a96aa3bSJed Brown 
28540a96aa3bSJed Brown     /* now every cell has labeled the points in its closure, so we first make sure everyone agrees by reducing to roots, and the broadcast the agreements */
28550a96aa3bSJed Brown     if (size > 1) {
28560a96aa3bSJed Brown       PetscInt *rootTypeCopy, p;
28570a96aa3bSJed Brown 
28589566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF-pStartF,&rootTypeCopy));
28599566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(rootTypeCopy,rootType,pEndF-pStartF));
2860*57168dbeSPierre Jolivet       PetscCall(PetscSFReduceBegin(pointSF,MPIU_INT,rootTypeCopy,rootTypeCopy,MPI_MAX));
2861*57168dbeSPierre Jolivet       PetscCall(PetscSFReduceEnd(pointSF,MPIU_INT,rootTypeCopy,rootTypeCopy,MPI_MAX));
28629566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointSF,MPIU_INT,rootTypeCopy,rootTypeCopy,MPI_REPLACE));
28639566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointSF,MPIU_INT,rootTypeCopy,rootTypeCopy,MPI_REPLACE));
28640a96aa3bSJed Brown       for (p = pStartF; p < pEndF; p++) {
28650a96aa3bSJed Brown         if (rootTypeCopy[p-pStartF] > rootType[p-pStartF]) { /* another process found a root of higher type (e.g. vertex instead of edge), which we want to accept, so nullify this */
28660a96aa3bSJed Brown           roots[p-pStartF].rank  = -1;
28670a96aa3bSJed Brown           roots[p-pStartF].index = -1;
28680a96aa3bSJed Brown         }
28690a96aa3bSJed Brown         if (formCids && rootTypeCopy[p-pStartF] == PETSC_MAX_INT) {
28700a96aa3bSJed Brown           cids[p-pStartF] = -1; /* we have found an antecedent that is the same: no child id */
28710a96aa3bSJed Brown         }
28720a96aa3bSJed Brown       }
28739566063dSJacob Faibussowitsch       PetscCall(PetscFree(rootTypeCopy));
28749566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceBegin(pointSF,nodeType,roots,roots,sfNodeReduce));
28759566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceEnd(pointSF,nodeType,roots,roots,sfNodeReduce));
28769566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointSF,nodeType,roots,roots,MPI_REPLACE));
28779566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointSF,nodeType,roots,roots,MPI_REPLACE));
28780a96aa3bSJed Brown     }
28799566063dSJacob Faibussowitsch     PetscCall(PetscFree(rootType));
28800a96aa3bSJed Brown 
28810a96aa3bSJed Brown     {
28820a96aa3bSJed Brown       PetscInt    numRoots;
28830a96aa3bSJed Brown       PetscInt    numLeaves;
28840a96aa3bSJed Brown       PetscInt    *leaves;
28850a96aa3bSJed Brown       PetscSFNode *iremote;
28860a96aa3bSJed Brown       /* count leaves */
28870a96aa3bSJed Brown 
28880a96aa3bSJed Brown       numRoots = pEndC - pStartC;
28890a96aa3bSJed Brown 
28900a96aa3bSJed Brown       numLeaves = 0;
28910a96aa3bSJed Brown       for (p = pStartF; p < pEndF; p++) {
28920a96aa3bSJed Brown         if (roots[p-pStartF].index >= 0) numLeaves++;
28930a96aa3bSJed Brown       }
28949566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numLeaves,&leaves));
28959566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numLeaves,&iremote));
28960a96aa3bSJed Brown       numLeaves = 0;
28970a96aa3bSJed Brown       for (p = pStartF; p < pEndF; p++) {
28980a96aa3bSJed Brown         if (roots[p-pStartF].index >= 0) {
28990a96aa3bSJed Brown           leaves[numLeaves]  = p-pStartF;
29000a96aa3bSJed Brown           iremote[numLeaves] = roots[p-pStartF];
29010a96aa3bSJed Brown           numLeaves++;
29020a96aa3bSJed Brown         }
29030a96aa3bSJed Brown       }
29049566063dSJacob Faibussowitsch       PetscCall(PetscFree(roots));
29059566063dSJacob Faibussowitsch       PetscCall(PetscSFCreate(comm,sf));
29060a96aa3bSJed Brown       if (numLeaves == (pEndF-pStartF)) {
29079566063dSJacob Faibussowitsch         PetscCall(PetscFree(leaves));
29089566063dSJacob Faibussowitsch         PetscCall(PetscSFSetGraph(*sf,numRoots,numLeaves,NULL,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER));
29090a96aa3bSJed Brown       } else {
29109566063dSJacob Faibussowitsch         PetscCall(PetscSFSetGraph(*sf,numRoots,numLeaves,leaves,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER));
29110a96aa3bSJed Brown       }
29120a96aa3bSJed Brown     }
29130a96aa3bSJed Brown     if (formCids) {
29140a96aa3bSJed Brown       PetscSF  pointSF;
29150a96aa3bSJed Brown       PetscInt child;
29160a96aa3bSJed Brown 
29179566063dSJacob Faibussowitsch       PetscCall(DMPlexGetReferenceTree(plexF,&refTree));
29189566063dSJacob Faibussowitsch       PetscCall(DMGetPointSF(plexF,&pointSF));
2919*57168dbeSPierre Jolivet       PetscCall(PetscSFReduceBegin(pointSF,MPIU_INT,cids,cids,MPI_MAX));
2920*57168dbeSPierre Jolivet       PetscCall(PetscSFReduceEnd(pointSF,MPIU_INT,cids,cids,MPI_MAX));
29210a96aa3bSJed Brown       if (childIds) *childIds = cids;
29220a96aa3bSJed Brown       for (child = 0; child < P4EST_CHILDREN; child++) {
29239566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(refTree,child+1,PETSC_TRUE,NULL,&childClosures[child]));
29240a96aa3bSJed Brown       }
29259566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(refTree,0,PETSC_TRUE,NULL,&rootClosure));
29260a96aa3bSJed Brown     }
29270a96aa3bSJed Brown   }
29280a96aa3bSJed Brown   if (saveInCoarse) { /* cache results */
29299566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)*sf));
29300a96aa3bSJed Brown     pforestC->pointSelfToAdaptSF = *sf;
29310a96aa3bSJed Brown     if (!childIds) {
29320a96aa3bSJed Brown       pforestC->pointSelfToAdaptCids = cids;
29330a96aa3bSJed Brown     } else {
29349566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF-pStartF,&pforestC->pointSelfToAdaptCids));
29359566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(pforestC->pointSelfToAdaptCids,cids,pEndF-pStartF));
29360a96aa3bSJed Brown     }
29370a96aa3bSJed Brown   } else if (saveInFine) {
29389566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)*sf));
29390a96aa3bSJed Brown     pforestF->pointAdaptToSelfSF = *sf;
29400a96aa3bSJed Brown     if (!childIds) {
29410a96aa3bSJed Brown       pforestF->pointAdaptToSelfCids = cids;
29420a96aa3bSJed Brown     } else {
29439566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF-pStartF,&pforestF->pointAdaptToSelfCids));
29449566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(pforestF->pointAdaptToSelfCids,cids,pEndF-pStartF));
29450a96aa3bSJed Brown     }
29460a96aa3bSJed Brown   }
29479566063dSJacob Faibussowitsch   PetscCall(PetscFree2(treeQuads,treeQuadCounts));
29489566063dSJacob Faibussowitsch   PetscCall(PetscFree(coverQuads));
29499566063dSJacob Faibussowitsch   PetscCall(PetscFree(closurePointsC));
29509566063dSJacob Faibussowitsch   PetscCall(PetscFree(closurePointsF));
29519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&nodeClosureType));
29529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Op_free(&sfNodeReduce));
29539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_free(&nodeType));
29540a96aa3bSJed Brown   PetscFunctionReturn(0);
29550a96aa3bSJed Brown }
29560a96aa3bSJed Brown 
29570a96aa3bSJed Brown /* children are sf leaves of parents */
29580a96aa3bSJed Brown static PetscErrorCode DMPforestGetTransferSF_Internal(DM coarse, DM fine, const PetscInt dofPerDim[], PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[])
29590a96aa3bSJed Brown {
29600a96aa3bSJed Brown   MPI_Comm          comm;
2961d70f29a3SPierre Jolivet   PetscMPIInt       rank;
29620a96aa3bSJed Brown   DM_Forest_pforest *pforestC, *pforestF;
29630a96aa3bSJed Brown   DM                plexC, plexF;
29640a96aa3bSJed Brown   PetscInt          pStartC, pEndC, pStartF, pEndF;
29650a96aa3bSJed Brown   PetscSF           pointTransferSF;
29660a96aa3bSJed Brown   PetscBool         allOnes = PETSC_TRUE;
29670a96aa3bSJed Brown 
29680a96aa3bSJed Brown   PetscFunctionBegin;
29690a96aa3bSJed Brown   pforestC = (DM_Forest_pforest*) ((DM_Forest*) coarse->data)->data;
29700a96aa3bSJed Brown   pforestF = (DM_Forest_pforest*) ((DM_Forest*) fine->data)->data;
297108401ef6SPierre Jolivet   PetscCheck(pforestC->topo == pforestF->topo,PetscObjectComm((PetscObject)coarse),PETSC_ERR_ARG_INCOMP,"DM's must have the same base DM");
29720a96aa3bSJed Brown   comm = PetscObjectComm((PetscObject)coarse);
29739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
29740a96aa3bSJed Brown 
29750a96aa3bSJed Brown   {
29760a96aa3bSJed Brown     PetscInt i;
29770a96aa3bSJed Brown     for (i = 0; i <= P4EST_DIM; i++) {
29780a96aa3bSJed Brown       if (dofPerDim[i] != 1) {
29790a96aa3bSJed Brown         allOnes = PETSC_FALSE;
29800a96aa3bSJed Brown         break;
29810a96aa3bSJed Brown       }
29820a96aa3bSJed Brown     }
29830a96aa3bSJed Brown   }
29849566063dSJacob Faibussowitsch   PetscCall(DMPforestGetTransferSF_Point(coarse,fine,&pointTransferSF,transferIdent,childIds));
29850a96aa3bSJed Brown   if (allOnes) {
29860a96aa3bSJed Brown     *sf = pointTransferSF;
29870a96aa3bSJed Brown     PetscFunctionReturn(0);
29880a96aa3bSJed Brown   }
29890a96aa3bSJed Brown 
29909566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(fine,&plexF));
29919566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexF,&pStartF,&pEndF));
29929566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(coarse,&plexC));
29939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexC,&pStartC,&pEndC));
29940a96aa3bSJed Brown   {
29950a96aa3bSJed Brown     PetscInt          numRoots;
29960a96aa3bSJed Brown     PetscInt          numLeaves;
29970a96aa3bSJed Brown     const PetscInt    *leaves;
29980a96aa3bSJed Brown     const PetscSFNode *iremote;
29990a96aa3bSJed Brown     PetscInt          d;
30000a96aa3bSJed Brown     PetscSection      leafSection, rootSection;
30010a96aa3bSJed Brown     /* count leaves */
30020a96aa3bSJed Brown 
30039566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(pointTransferSF,&numRoots,&numLeaves,&leaves,&iremote));
30049566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PETSC_COMM_SELF,&rootSection));
30059566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PETSC_COMM_SELF,&leafSection));
30069566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(rootSection,pStartC,pEndC));
30079566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(leafSection,pStartF,pEndF));
30080a96aa3bSJed Brown 
30090a96aa3bSJed Brown     for (d = 0; d <= P4EST_DIM; d++) {
30100a96aa3bSJed Brown       PetscInt startC, endC, e;
30110a96aa3bSJed Brown 
30129566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(plexC,P4EST_DIM-d,&startC,&endC));
30130a96aa3bSJed Brown       for (e = startC; e < endC; e++) {
30149566063dSJacob Faibussowitsch         PetscCall(PetscSectionSetDof(rootSection,e,dofPerDim[d]));
30150a96aa3bSJed Brown       }
30160a96aa3bSJed Brown     }
30170a96aa3bSJed Brown 
30180a96aa3bSJed Brown     for (d = 0; d <= P4EST_DIM; d++) {
30190a96aa3bSJed Brown       PetscInt startF, endF, e;
30200a96aa3bSJed Brown 
30219566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(plexF,P4EST_DIM-d,&startF,&endF));
30220a96aa3bSJed Brown       for (e = startF; e < endF; e++) {
30239566063dSJacob Faibussowitsch         PetscCall(PetscSectionSetDof(leafSection,e,dofPerDim[d]));
30240a96aa3bSJed Brown       }
30250a96aa3bSJed Brown     }
30260a96aa3bSJed Brown 
30279566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(rootSection));
30289566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(leafSection));
30290a96aa3bSJed Brown     {
30300a96aa3bSJed Brown       PetscInt    nroots, nleaves;
30310a96aa3bSJed Brown       PetscInt    *mine, i, p;
30320a96aa3bSJed Brown       PetscInt    *offsets, *offsetsRoot;
30330a96aa3bSJed Brown       PetscSFNode *remote;
30340a96aa3bSJed Brown 
30359566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndF-pStartF,&offsets));
30369566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(pEndC-pStartC,&offsetsRoot));
30370a96aa3bSJed Brown       for (p = pStartC; p < pEndC; p++) {
30389566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(rootSection,p,&offsetsRoot[p-pStartC]));
30390a96aa3bSJed Brown       }
30409566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointTransferSF,MPIU_INT,offsetsRoot,offsets,MPI_REPLACE));
30419566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointTransferSF,MPIU_INT,offsetsRoot,offsets,MPI_REPLACE));
30429566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(rootSection,&nroots));
30430a96aa3bSJed Brown       nleaves = 0;
30440a96aa3bSJed Brown       for (i = 0; i < numLeaves; i++) {
30450a96aa3bSJed Brown         PetscInt leaf = leaves ? leaves[i] : i;
30460a96aa3bSJed Brown         PetscInt dof;
30470a96aa3bSJed Brown 
30489566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(leafSection,leaf,&dof));
30490a96aa3bSJed Brown         nleaves += dof;
30500a96aa3bSJed Brown       }
30519566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nleaves,&mine));
30529566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nleaves,&remote));
30530a96aa3bSJed Brown       nleaves = 0;
30540a96aa3bSJed Brown       for (i = 0; i < numLeaves; i++) {
30550a96aa3bSJed Brown         PetscInt leaf = leaves ? leaves[i] : i;
30560a96aa3bSJed Brown         PetscInt dof;
30570a96aa3bSJed Brown         PetscInt off, j;
30580a96aa3bSJed Brown 
30599566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(leafSection,leaf,&dof));
30609566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(leafSection,leaf,&off));
30610a96aa3bSJed Brown         for (j = 0; j < dof; j++) {
30620a96aa3bSJed Brown           remote[nleaves].rank  = iremote[i].rank;
30630a96aa3bSJed Brown           remote[nleaves].index = offsets[leaf] + j;
30640a96aa3bSJed Brown           mine[nleaves++]       = off + j;
30650a96aa3bSJed Brown         }
30660a96aa3bSJed Brown       }
30679566063dSJacob Faibussowitsch       PetscCall(PetscFree(offsetsRoot));
30689566063dSJacob Faibussowitsch       PetscCall(PetscFree(offsets));
30699566063dSJacob Faibussowitsch       PetscCall(PetscSFCreate(comm,sf));
30709566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(*sf,nroots,nleaves,mine,PETSC_OWN_POINTER,remote,PETSC_OWN_POINTER));
30710a96aa3bSJed Brown     }
30729566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&leafSection));
30739566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&rootSection));
30749566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&pointTransferSF));
30750a96aa3bSJed Brown   }
30760a96aa3bSJed Brown   PetscFunctionReturn(0);
30770a96aa3bSJed Brown }
30780a96aa3bSJed Brown 
30790a96aa3bSJed Brown static PetscErrorCode DMPforestGetTransferSF(DM dmA, DM dmB, const PetscInt dofPerDim[], PetscSF *sfAtoB, PetscSF *sfBtoA)
30800a96aa3bSJed Brown {
30810a96aa3bSJed Brown   DM             adaptA, adaptB;
30820a96aa3bSJed Brown   DMAdaptFlag    purpose;
30830a96aa3bSJed Brown 
30840a96aa3bSJed Brown   PetscFunctionBegin;
30859566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dmA,&adaptA));
30869566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dmB,&adaptB));
30870a96aa3bSJed Brown   /* it is more efficient when the coarser mesh is the first argument: reorder if we know one is coarser than the other */
30880a96aa3bSJed Brown   if (adaptA && adaptA->data == dmB->data) { /* dmA was adapted from dmB */
30899566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityPurpose(dmA,&purpose));
30900a96aa3bSJed Brown     if (purpose == DM_ADAPT_REFINE) {
30919566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB));
30920a96aa3bSJed Brown       PetscFunctionReturn(0);
30930a96aa3bSJed Brown     }
30940a96aa3bSJed Brown   } else if (adaptB && adaptB->data == dmA->data) { /* dmB was adapted from dmA */
30959566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityPurpose(dmB,&purpose));
30960a96aa3bSJed Brown     if (purpose == DM_ADAPT_COARSEN) {
30979566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB));
30980a96aa3bSJed Brown       PetscFunctionReturn(0);
30990a96aa3bSJed Brown     }
31000a96aa3bSJed Brown   }
31011baa6e33SBarry Smith   if (sfAtoB) PetscCall(DMPforestGetTransferSF_Internal(dmA,dmB,dofPerDim,sfAtoB,PETSC_TRUE,NULL));
31021baa6e33SBarry Smith   if (sfBtoA) PetscCall(DMPforestGetTransferSF_Internal(dmB,dmA,dofPerDim,sfBtoA,(PetscBool) (sfAtoB == NULL),NULL));
31030a96aa3bSJed Brown   PetscFunctionReturn(0);
31040a96aa3bSJed Brown }
31050a96aa3bSJed Brown 
31060a96aa3bSJed Brown static PetscErrorCode DMPforestLabelsInitialize(DM dm, DM plex)
31070a96aa3bSJed Brown {
31080a96aa3bSJed Brown   DM_Forest         *forest  = (DM_Forest*) dm->data;
31090a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest*) forest->data;
31100a96aa3bSJed Brown   PetscInt          cLocalStart, cLocalEnd, cStart, cEnd, fStart, fEnd, eStart, eEnd, vStart, vEnd;
31110a96aa3bSJed Brown   PetscInt          cStartBase, cEndBase, fStartBase, fEndBase, vStartBase, vEndBase, eStartBase, eEndBase;
31120a96aa3bSJed Brown   PetscInt          pStart, pEnd, pStartBase, pEndBase, p;
31130a96aa3bSJed Brown   DM                base;
31140a96aa3bSJed Brown   PetscInt          *star     = NULL, starSize;
31150a96aa3bSJed Brown   DMLabelLink       next      = dm->labels;
31160a96aa3bSJed Brown   PetscInt          guess     = 0;
31170a96aa3bSJed Brown   p4est_topidx_t    num_trees = pforest->topo->conn->num_trees;
31180a96aa3bSJed Brown 
31190a96aa3bSJed Brown   PetscFunctionBegin;
31200a96aa3bSJed Brown   pforest->labelsFinalized = PETSC_TRUE;
31210a96aa3bSJed Brown   cLocalStart              = pforest->cLocalStart;
31220a96aa3bSJed Brown   cLocalEnd                = pforest->cLocalEnd;
31239566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm,&base));
31240a96aa3bSJed Brown   if (!base) {
31250a96aa3bSJed Brown     if (pforest->ghostName) { /* insert a label to make the boundaries, with stratum values denoting which face of the element touches the boundary */
31260a96aa3bSJed Brown       p4est_connectivity_t *conn  = pforest->topo->conn;
31270a96aa3bSJed Brown       p4est_t              *p4est = pforest->forest;
31280a96aa3bSJed Brown       p4est_tree_t         *trees = (p4est_tree_t*) p4est->trees->array;
31290a96aa3bSJed Brown       p4est_topidx_t       t, flt = p4est->first_local_tree;
31300a96aa3bSJed Brown       p4est_topidx_t       llt = pforest->forest->last_local_tree;
31310a96aa3bSJed Brown       DMLabel              ghostLabel;
31320a96aa3bSJed Brown       PetscInt             c;
31330a96aa3bSJed Brown 
31349566063dSJacob Faibussowitsch       PetscCall(DMCreateLabel(plex,pforest->ghostName));
31359566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(plex,pforest->ghostName,&ghostLabel));
31360a96aa3bSJed Brown       for (c = cLocalStart, t = flt; t <= llt; t++) {
31370a96aa3bSJed Brown         p4est_tree_t     *tree    = &trees[t];
31380a96aa3bSJed Brown         p4est_quadrant_t *quads   = (p4est_quadrant_t*) tree->quadrants.array;
31390a96aa3bSJed Brown         PetscInt         numQuads = (PetscInt) tree->quadrants.elem_count;
31400a96aa3bSJed Brown         PetscInt         q;
31410a96aa3bSJed Brown 
31420a96aa3bSJed Brown         for (q = 0; q < numQuads; q++, c++) {
31430a96aa3bSJed Brown           p4est_quadrant_t *quad = &quads[q];
31440a96aa3bSJed Brown           PetscInt         f;
31450a96aa3bSJed Brown 
31460a96aa3bSJed Brown           for (f = 0; f < P4EST_FACES; f++) {
31470a96aa3bSJed Brown             p4est_quadrant_t neigh;
31480a96aa3bSJed Brown             int              isOutside;
31490a96aa3bSJed Brown 
3150792fecdfSBarry Smith             PetscCallP4est(p4est_quadrant_face_neighbor,(quad,f,&neigh));
3151792fecdfSBarry Smith             PetscCallP4estReturn(isOutside,p4est_quadrant_is_outside_face,(&neigh));
31520a96aa3bSJed Brown             if (isOutside) {
31530a96aa3bSJed Brown               p4est_topidx_t nt;
31540a96aa3bSJed Brown               PetscInt       nf;
31550a96aa3bSJed Brown 
31560a96aa3bSJed Brown               nt = conn->tree_to_tree[t * P4EST_FACES + f];
31570a96aa3bSJed Brown               nf = (PetscInt) conn->tree_to_face[t * P4EST_FACES + f];
31580a96aa3bSJed Brown               nf = nf % P4EST_FACES;
31590a96aa3bSJed Brown               if (nt == t && nf == f) {
31600a96aa3bSJed Brown                 PetscInt       plexF = P4estFaceToPetscFace[f];
31610a96aa3bSJed Brown                 const PetscInt *cone;
31620a96aa3bSJed Brown 
31639566063dSJacob Faibussowitsch                 PetscCall(DMPlexGetCone(plex,c,&cone));
31649566063dSJacob Faibussowitsch                 PetscCall(DMLabelSetValue(ghostLabel,cone[plexF],plexF+1));
31650a96aa3bSJed Brown               }
31660a96aa3bSJed Brown             }
31670a96aa3bSJed Brown           }
31680a96aa3bSJed Brown         }
31690a96aa3bSJed Brown       }
31700a96aa3bSJed Brown     }
31710a96aa3bSJed Brown     PetscFunctionReturn(0);
31720a96aa3bSJed Brown   }
31739566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(base,0,&cStartBase,&cEndBase));
31749566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(base,1,&fStartBase,&fEndBase));
31759566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(base,P4EST_DIM-1,&eStartBase,&eEndBase));
31769566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(base,0,&vStartBase,&vEndBase));
31770a96aa3bSJed Brown 
31789566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(plex,0,&cStart,&cEnd));
31799566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(plex,1,&fStart,&fEnd));
31809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(plex,P4EST_DIM-1,&eStart,&eEnd));
31819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(plex,0,&vStart,&vEnd));
31820a96aa3bSJed Brown 
31839566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plex,&pStart,&pEnd));
31849566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(base,&pStartBase,&pEndBase));
31850a96aa3bSJed Brown   /* go through the mesh: use star to find a quadrant that borders a point.  Use the closure to determine the
31860a96aa3bSJed Brown    * orientation of the quadrant relative to that point.  Use that to relate the point to the numbering in the base
31870a96aa3bSJed Brown    * mesh, and extract a label value (since the base mesh is redundantly distributed, can be found locally). */
31880a96aa3bSJed Brown   while (next) {
31890a96aa3bSJed Brown     DMLabel   baseLabel;
31900a96aa3bSJed Brown     DMLabel   label = next->label;
31910a96aa3bSJed Brown     PetscBool isDepth, isCellType, isGhost, isVTK, isSpmap;
31920a96aa3bSJed Brown     const char *name;
31930a96aa3bSJed Brown 
31949566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject) label, &name));
31959566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name,"depth",&isDepth));
31960a96aa3bSJed Brown     if (isDepth) {
31970a96aa3bSJed Brown       next = next->next;
31980a96aa3bSJed Brown       continue;
31990a96aa3bSJed Brown     }
32009566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name,"celltype",&isCellType));
32010a96aa3bSJed Brown     if (isCellType) {
32020a96aa3bSJed Brown       next = next->next;
32030a96aa3bSJed Brown       continue;
32040a96aa3bSJed Brown     }
32059566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name,"ghost",&isGhost));
32060a96aa3bSJed Brown     if (isGhost) {
32070a96aa3bSJed Brown       next = next->next;
32080a96aa3bSJed Brown       continue;
32090a96aa3bSJed Brown     }
32109566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name,"vtk",&isVTK));
32110a96aa3bSJed Brown     if (isVTK) {
32120a96aa3bSJed Brown       next = next->next;
32130a96aa3bSJed Brown       continue;
32140a96aa3bSJed Brown     }
32159566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name,"_forest_base_subpoint_map",&isSpmap));
32160a96aa3bSJed Brown     if (!isSpmap) {
32179566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(base,name,&baseLabel));
32180a96aa3bSJed Brown       if (!baseLabel) {
32190a96aa3bSJed Brown         next = next->next;
32200a96aa3bSJed Brown         continue;
32210a96aa3bSJed Brown       }
32229566063dSJacob Faibussowitsch       PetscCall(DMLabelCreateIndex(baseLabel,pStartBase,pEndBase));
32230a96aa3bSJed Brown     } else baseLabel = NULL;
32240a96aa3bSJed Brown 
32250a96aa3bSJed Brown     for (p = pStart; p < pEnd; p++) {
32260a96aa3bSJed Brown       PetscInt         s, c = -1, l;
32270a96aa3bSJed Brown       PetscInt         *closure = NULL, closureSize;
32280a96aa3bSJed Brown       p4est_quadrant_t * ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array;
32290a96aa3bSJed Brown       p4est_tree_t     *trees   = (p4est_tree_t*) pforest->forest->trees->array;
32300a96aa3bSJed Brown       p4est_quadrant_t * q;
32310a96aa3bSJed Brown       PetscInt         t, val;
32320a96aa3bSJed Brown       PetscBool        zerosupportpoint = PETSC_FALSE;
32330a96aa3bSJed Brown 
32349566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(plex,p,PETSC_FALSE,&starSize,&star));
32350a96aa3bSJed Brown       for (s = 0; s < starSize; s++) {
32360a96aa3bSJed Brown         PetscInt point = star[2*s];
32370a96aa3bSJed Brown 
32380a96aa3bSJed Brown         if (cStart <= point && point < cEnd) {
32399566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTransitiveClosure(plex,point,PETSC_TRUE,&closureSize,&closure));
32400a96aa3bSJed Brown           for (l = 0; l < closureSize; l++) {
32410a96aa3bSJed Brown             PetscInt qParent = closure[2 * l], q, pp = p, pParent = p;
32420a96aa3bSJed Brown             do { /* check parents of q */
32430a96aa3bSJed Brown               q = qParent;
32440a96aa3bSJed Brown               if (q == p) {
32450a96aa3bSJed Brown                 c = point;
32460a96aa3bSJed Brown                 break;
32470a96aa3bSJed Brown               }
32489566063dSJacob Faibussowitsch               PetscCall(DMPlexGetTreeParent(plex,q,&qParent,NULL));
32490a96aa3bSJed Brown             } while (qParent != q);
32500a96aa3bSJed Brown             if (c != -1) break;
32519566063dSJacob Faibussowitsch             PetscCall(DMPlexGetTreeParent(plex,pp,&pParent,NULL));
32520a96aa3bSJed Brown             q = closure[2 * l];
32530a96aa3bSJed Brown             while (pParent != pp) { /* check parents of p */
32540a96aa3bSJed Brown               pp = pParent;
32550a96aa3bSJed Brown               if (pp == q) {
32560a96aa3bSJed Brown                 c = point;
32570a96aa3bSJed Brown                 break;
32580a96aa3bSJed Brown               }
32599566063dSJacob Faibussowitsch               PetscCall(DMPlexGetTreeParent(plex,pp,&pParent,NULL));
32600a96aa3bSJed Brown             }
32610a96aa3bSJed Brown             if (c != -1) break;
32620a96aa3bSJed Brown           }
32639566063dSJacob Faibussowitsch           PetscCall(DMPlexRestoreTransitiveClosure(plex,point,PETSC_TRUE,NULL,&closure));
32640a96aa3bSJed Brown           if (l < closureSize) break;
32650a96aa3bSJed Brown         } else {
32660a96aa3bSJed Brown           PetscInt supportSize;
32670a96aa3bSJed Brown 
32689566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(plex,point,&supportSize));
32690a96aa3bSJed Brown           zerosupportpoint = (PetscBool) (zerosupportpoint || !supportSize);
32700a96aa3bSJed Brown         }
32710a96aa3bSJed Brown       }
32720a96aa3bSJed Brown       if (c < 0) {
32730a96aa3bSJed Brown         const char* prefix;
32740a96aa3bSJed Brown         PetscBool   print = PETSC_FALSE;
32750a96aa3bSJed Brown 
32769566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm,&prefix));
32779566063dSJacob Faibussowitsch         PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options,prefix,"-dm_forest_print_label_error",&print,NULL));
32780a96aa3bSJed Brown         if (print) {
32790a96aa3bSJed Brown           PetscInt i;
32800a96aa3bSJed Brown 
328163a3b9bcSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF,"[%d] Failed to find cell with point %" PetscInt_FMT " in its closure for label %s (starSize %" PetscInt_FMT ")\n",PetscGlobalRank,p,baseLabel ? ((PetscObject)baseLabel)->name : "_forest_base_subpoint_map",starSize));
328263a3b9bcSJacob Faibussowitsch           for (i = 0; i < starSize; i++) PetscCall(PetscPrintf(PETSC_COMM_SELF,"  star[%" PetscInt_FMT "] = %" PetscInt_FMT ",%" PetscInt_FMT "\n",i,star[2*i],star[2*i+1]));
32830a96aa3bSJed Brown         }
32849566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(plex,p,PETSC_FALSE,NULL,&star));
32850a96aa3bSJed Brown         if (zerosupportpoint) continue;
328663a3b9bcSJacob Faibussowitsch         else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Failed to find cell with point %" PetscInt_FMT " in its closure for label %s. Rerun with -dm_forest_print_label_error for more information",p,baseLabel ? ((PetscObject) baseLabel)->name : "_forest_base_subpoint_map");
32870a96aa3bSJed Brown       }
32889566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(plex,p,PETSC_FALSE,NULL,&star));
32890a96aa3bSJed Brown 
32900a96aa3bSJed Brown       if (c < cLocalStart) {
32910a96aa3bSJed Brown         /* get from the beginning of the ghost layer */
32920a96aa3bSJed Brown         q = &(ghosts[c]);
32930a96aa3bSJed Brown         t = (PetscInt) q->p.which_tree;
32940a96aa3bSJed Brown       } else if (c < cLocalEnd) {
32950a96aa3bSJed Brown         PetscInt lo = 0, hi = num_trees;
32960a96aa3bSJed Brown         /* get from local quadrants: have to find the right tree */
32970a96aa3bSJed Brown 
32980a96aa3bSJed Brown         c -= cLocalStart;
32990a96aa3bSJed Brown 
33000a96aa3bSJed Brown         do {
33010a96aa3bSJed Brown           p4est_tree_t *tree;
33020a96aa3bSJed Brown 
33031dca8a05SBarry Smith           PetscCheck(guess >= lo && guess < num_trees && lo < hi,PETSC_COMM_SELF,PETSC_ERR_PLIB,"failed binary search");
33040a96aa3bSJed Brown           tree = &trees[guess];
33050a96aa3bSJed Brown           if (c < tree->quadrants_offset) {
33060a96aa3bSJed Brown             hi = guess;
33070a96aa3bSJed Brown           } else if (c < tree->quadrants_offset + (PetscInt) tree->quadrants.elem_count) {
33080a96aa3bSJed Brown             q = &((p4est_quadrant_t *)tree->quadrants.array)[c - (PetscInt) tree->quadrants_offset];
33090a96aa3bSJed Brown             t = guess;
33100a96aa3bSJed Brown             break;
33110a96aa3bSJed Brown           } else {
33120a96aa3bSJed Brown             lo = guess + 1;
33130a96aa3bSJed Brown           }
33140a96aa3bSJed Brown           guess = lo + (hi - lo) / 2;
33150a96aa3bSJed Brown         } while (1);
33160a96aa3bSJed Brown       } else {
33170a96aa3bSJed Brown         /* get from the end of the ghost layer */
33180a96aa3bSJed Brown         c -= (cLocalEnd - cLocalStart);
33190a96aa3bSJed Brown 
33200a96aa3bSJed Brown         q = &(ghosts[c]);
33210a96aa3bSJed Brown         t = (PetscInt) q->p.which_tree;
33220a96aa3bSJed Brown       }
33230a96aa3bSJed Brown 
33240a96aa3bSJed Brown       if (l == 0) { /* cell */
33250a96aa3bSJed Brown         if (baseLabel) {
33269566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(baseLabel,t+cStartBase,&val));
33270a96aa3bSJed Brown         } else {
33280a96aa3bSJed Brown           val  = t+cStartBase;
33290a96aa3bSJed Brown         }
33309566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(label,p,val));
33310a96aa3bSJed Brown       } else if (l >= 1 && l < 1 + P4EST_FACES) { /* facet */
33320a96aa3bSJed Brown         p4est_quadrant_t nq;
33330a96aa3bSJed Brown         int              isInside;
33340a96aa3bSJed Brown 
33350a96aa3bSJed Brown         l = PetscFaceToP4estFace[l - 1];
3336792fecdfSBarry Smith         PetscCallP4est(p4est_quadrant_face_neighbor,(q,l,&nq));
3337792fecdfSBarry Smith         PetscCallP4estReturn(isInside,p4est_quadrant_is_inside_root,(&nq));
33380a96aa3bSJed Brown         if (isInside) {
33390a96aa3bSJed Brown           /* this facet is in the interior of a tree, so it inherits the label of the tree */
33400a96aa3bSJed Brown           if (baseLabel) {
33419566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(baseLabel,t+cStartBase,&val));
33420a96aa3bSJed Brown           } else {
33430a96aa3bSJed Brown             val  = t+cStartBase;
33440a96aa3bSJed Brown           }
33459566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label,p,val));
33460a96aa3bSJed Brown         } else {
33470a96aa3bSJed Brown           PetscInt f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + l];
33480a96aa3bSJed Brown 
33490a96aa3bSJed Brown           if (baseLabel) {
33509566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(baseLabel,f+fStartBase,&val));
33510a96aa3bSJed Brown           } else {
33520a96aa3bSJed Brown             val  = f+fStartBase;
33530a96aa3bSJed Brown           }
33549566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label,p,val));
33550a96aa3bSJed Brown         }
33560a96aa3bSJed Brown #if defined(P4_TO_P8)
33570a96aa3bSJed Brown       } else if (l >= 1 + P4EST_FACES && l < 1 + P4EST_FACES + P8EST_EDGES) { /* edge */
33580a96aa3bSJed Brown         p4est_quadrant_t nq;
33590a96aa3bSJed Brown         int              isInside;
33600a96aa3bSJed Brown 
33610a96aa3bSJed Brown         l = PetscEdgeToP4estEdge[l - (1 + P4EST_FACES)];
3362792fecdfSBarry Smith         PetscCallP4est(p8est_quadrant_edge_neighbor,(q,l,&nq));
3363792fecdfSBarry Smith         PetscCallP4estReturn(isInside,p4est_quadrant_is_inside_root,(&nq));
33640a96aa3bSJed Brown         if (isInside) {
33650a96aa3bSJed Brown           /* this edge is in the interior of a tree, so it inherits the label of the tree */
33660a96aa3bSJed Brown           if (baseLabel) {
33679566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(baseLabel,t+cStartBase,&val));
33680a96aa3bSJed Brown           } else {
33690a96aa3bSJed Brown             val  = t+cStartBase;
33700a96aa3bSJed Brown           }
33719566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label,p,val));
33720a96aa3bSJed Brown         } else {
33730a96aa3bSJed Brown           int isOutsideFace;
33740a96aa3bSJed Brown 
3375792fecdfSBarry Smith           PetscCallP4estReturn(isOutsideFace,p4est_quadrant_is_outside_face,(&nq));
33760a96aa3bSJed Brown           if (isOutsideFace) {
33770a96aa3bSJed Brown             PetscInt f;
33780a96aa3bSJed Brown 
33790a96aa3bSJed Brown             if (nq.x < 0) {
33800a96aa3bSJed Brown               f = 0;
33810a96aa3bSJed Brown             } else if (nq.x >= P4EST_ROOT_LEN) {
33820a96aa3bSJed Brown               f = 1;
33830a96aa3bSJed Brown             } else if (nq.y < 0) {
33840a96aa3bSJed Brown               f = 2;
33850a96aa3bSJed Brown             } else if (nq.y >= P4EST_ROOT_LEN) {
33860a96aa3bSJed Brown               f = 3;
33870a96aa3bSJed Brown             } else if (nq.z < 0) {
33880a96aa3bSJed Brown               f = 4;
33890a96aa3bSJed Brown             } else {
33900a96aa3bSJed Brown               f = 5;
33910a96aa3bSJed Brown             }
33920a96aa3bSJed Brown             f    = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f];
33930a96aa3bSJed Brown             if (baseLabel) {
33949566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel,f+fStartBase,&val));
33950a96aa3bSJed Brown             } else {
33960a96aa3bSJed Brown               val  = f+fStartBase;
33970a96aa3bSJed Brown             }
33989566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label,p,val));
33990a96aa3bSJed Brown           } else { /* the quadrant edge corresponds to the tree edge */
34000a96aa3bSJed Brown             PetscInt e = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + l];
34010a96aa3bSJed Brown 
34020a96aa3bSJed Brown             if (baseLabel) {
34039566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel,e+eStartBase,&val));
34040a96aa3bSJed Brown             } else {
34050a96aa3bSJed Brown               val  = e+eStartBase;
34060a96aa3bSJed Brown             }
34079566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label,p,val));
34080a96aa3bSJed Brown           }
34090a96aa3bSJed Brown         }
34100a96aa3bSJed Brown #endif
34110a96aa3bSJed Brown       } else { /* vertex */
34120a96aa3bSJed Brown         p4est_quadrant_t nq;
34130a96aa3bSJed Brown         int              isInside;
34140a96aa3bSJed Brown 
34150a96aa3bSJed Brown #if defined(P4_TO_P8)
34160a96aa3bSJed Brown         l = PetscVertToP4estVert[l - (1 + P4EST_FACES + P8EST_EDGES)];
34170a96aa3bSJed Brown #else
34180a96aa3bSJed Brown         l = PetscVertToP4estVert[l - (1 + P4EST_FACES)];
34190a96aa3bSJed Brown #endif
3420792fecdfSBarry Smith         PetscCallP4est(p4est_quadrant_corner_neighbor,(q,l,&nq));
3421792fecdfSBarry Smith         PetscCallP4estReturn(isInside,p4est_quadrant_is_inside_root,(&nq));
34220a96aa3bSJed Brown         if (isInside) {
34230a96aa3bSJed Brown           if (baseLabel) {
34249566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(baseLabel,t+cStartBase,&val));
34250a96aa3bSJed Brown           } else {
34260a96aa3bSJed Brown             val  = t+cStartBase;
34270a96aa3bSJed Brown           }
34289566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label,p,val));
34290a96aa3bSJed Brown         } else {
34300a96aa3bSJed Brown           int isOutside;
34310a96aa3bSJed Brown 
3432792fecdfSBarry Smith           PetscCallP4estReturn(isOutside,p4est_quadrant_is_outside_face,(&nq));
34330a96aa3bSJed Brown           if (isOutside) {
34340a96aa3bSJed Brown             PetscInt f = -1;
34350a96aa3bSJed Brown 
34360a96aa3bSJed Brown             if (nq.x < 0) {
34370a96aa3bSJed Brown               f = 0;
34380a96aa3bSJed Brown             } else if (nq.x >= P4EST_ROOT_LEN) {
34390a96aa3bSJed Brown               f = 1;
34400a96aa3bSJed Brown             } else if (nq.y < 0) {
34410a96aa3bSJed Brown               f = 2;
34420a96aa3bSJed Brown             } else if (nq.y >= P4EST_ROOT_LEN) {
34430a96aa3bSJed Brown               f = 3;
34440a96aa3bSJed Brown #if defined(P4_TO_P8)
34450a96aa3bSJed Brown             } else if (nq.z < 0) {
34460a96aa3bSJed Brown               f = 4;
34470a96aa3bSJed Brown             } else {
34480a96aa3bSJed Brown               f = 5;
34490a96aa3bSJed Brown #endif
34500a96aa3bSJed Brown             }
34510a96aa3bSJed Brown             f    = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f];
34520a96aa3bSJed Brown             if (baseLabel) {
34539566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel,f+fStartBase,&val));
34540a96aa3bSJed Brown             } else {
34550a96aa3bSJed Brown               val  = f+fStartBase;
34560a96aa3bSJed Brown             }
34579566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label,p,val));
34580a96aa3bSJed Brown             continue;
34590a96aa3bSJed Brown           }
34600a96aa3bSJed Brown #if defined(P4_TO_P8)
3461792fecdfSBarry Smith           PetscCallP4estReturn(isOutside,p8est_quadrant_is_outside_edge,(&nq));
34620a96aa3bSJed Brown           if (isOutside) {
34630a96aa3bSJed Brown             /* outside edge */
34640a96aa3bSJed Brown             PetscInt e = -1;
34650a96aa3bSJed Brown 
34660a96aa3bSJed Brown             if (nq.x >= 0 && nq.x < P4EST_ROOT_LEN) {
34670a96aa3bSJed Brown               if (nq.z < 0) {
34680a96aa3bSJed Brown                 if (nq.y < 0) {
34690a96aa3bSJed Brown                   e = 0;
34700a96aa3bSJed Brown                 } else {
34710a96aa3bSJed Brown                   e = 1;
34720a96aa3bSJed Brown                 }
34730a96aa3bSJed Brown               } else {
34740a96aa3bSJed Brown                 if (nq.y < 0) {
34750a96aa3bSJed Brown                   e = 2;
34760a96aa3bSJed Brown                 } else {
34770a96aa3bSJed Brown                   e = 3;
34780a96aa3bSJed Brown                 }
34790a96aa3bSJed Brown               }
34800a96aa3bSJed Brown             } else if (nq.y >= 0 && nq.y < P4EST_ROOT_LEN) {
34810a96aa3bSJed Brown               if (nq.z < 0) {
34820a96aa3bSJed Brown                 if (nq.x < 0) {
34830a96aa3bSJed Brown                   e = 4;
34840a96aa3bSJed Brown                 } else {
34850a96aa3bSJed Brown                   e = 5;
34860a96aa3bSJed Brown                 }
34870a96aa3bSJed Brown               } else {
34880a96aa3bSJed Brown                 if (nq.x < 0) {
34890a96aa3bSJed Brown                   e = 6;
34900a96aa3bSJed Brown                 } else {
34910a96aa3bSJed Brown                   e = 7;
34920a96aa3bSJed Brown                 }
34930a96aa3bSJed Brown               }
34940a96aa3bSJed Brown             } else {
34950a96aa3bSJed Brown               if (nq.y < 0) {
34960a96aa3bSJed Brown                 if (nq.x < 0) {
34970a96aa3bSJed Brown                   e = 8;
34980a96aa3bSJed Brown                 } else {
34990a96aa3bSJed Brown                   e = 9;
35000a96aa3bSJed Brown                 }
35010a96aa3bSJed Brown               } else {
35020a96aa3bSJed Brown                 if (nq.x < 0) {
35030a96aa3bSJed Brown                   e = 10;
35040a96aa3bSJed Brown                 } else {
35050a96aa3bSJed Brown                   e = 11;
35060a96aa3bSJed Brown                 }
35070a96aa3bSJed Brown               }
35080a96aa3bSJed Brown             }
35090a96aa3bSJed Brown 
35100a96aa3bSJed Brown             e    = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + e];
35110a96aa3bSJed Brown             if (baseLabel) {
35129566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel,e+eStartBase,&val));
35130a96aa3bSJed Brown             } else {
35140a96aa3bSJed Brown               val  = e+eStartBase;
35150a96aa3bSJed Brown             }
35169566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label,p,val));
35170a96aa3bSJed Brown             continue;
35180a96aa3bSJed Brown           }
35190a96aa3bSJed Brown #endif
35200a96aa3bSJed Brown           {
35210a96aa3bSJed Brown             /* outside vertex: same corner as quadrant corner */
35220a96aa3bSJed Brown             PetscInt v = pforest->topo->conn->tree_to_corner[P4EST_CHILDREN * t + l];
35230a96aa3bSJed Brown 
35240a96aa3bSJed Brown             if (baseLabel) {
35259566063dSJacob Faibussowitsch               PetscCall(DMLabelGetValue(baseLabel,v+vStartBase,&val));
35260a96aa3bSJed Brown             } else {
35270a96aa3bSJed Brown               val  = v+vStartBase;
35280a96aa3bSJed Brown             }
35299566063dSJacob Faibussowitsch             PetscCall(DMLabelSetValue(label,p,val));
35300a96aa3bSJed Brown           }
35310a96aa3bSJed Brown         }
35320a96aa3bSJed Brown       }
35330a96aa3bSJed Brown     }
35340a96aa3bSJed Brown     next = next->next;
35350a96aa3bSJed Brown   }
35360a96aa3bSJed Brown   PetscFunctionReturn(0);
35370a96aa3bSJed Brown }
35380a96aa3bSJed Brown 
35390a96aa3bSJed Brown static PetscErrorCode DMPforestLabelsFinalize(DM dm, DM plex)
35400a96aa3bSJed Brown {
35410a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data;
35420a96aa3bSJed Brown   DM                adapt;
35430a96aa3bSJed Brown 
35440a96aa3bSJed Brown   PetscFunctionBegin;
35450a96aa3bSJed Brown   if (pforest->labelsFinalized) PetscFunctionReturn(0);
35460a96aa3bSJed Brown   pforest->labelsFinalized = PETSC_TRUE;
35479566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dm,&adapt));
35480a96aa3bSJed Brown   if (!adapt) {
35490a96aa3bSJed Brown     /* Initialize labels from the base dm */
35509566063dSJacob Faibussowitsch     PetscCall(DMPforestLabelsInitialize(dm,plex));
35510a96aa3bSJed Brown   } else {
35520a96aa3bSJed Brown     PetscInt    dofPerDim[4]={1, 1, 1, 1};
35530a96aa3bSJed Brown     PetscSF     transferForward, transferBackward, pointSF;
35540a96aa3bSJed Brown     PetscInt    pStart, pEnd, pStartA, pEndA;
35550a96aa3bSJed Brown     PetscInt    *values, *adaptValues;
35560a96aa3bSJed Brown     DMLabelLink next = adapt->labels;
35570a96aa3bSJed Brown     DMLabel     adaptLabel;
35580a96aa3bSJed Brown     DM          adaptPlex;
35590a96aa3bSJed Brown 
35609566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdaptivityLabel(dm,&adaptLabel));
35619566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(adapt,&adaptPlex));
35629566063dSJacob Faibussowitsch     PetscCall(DMPforestGetTransferSF(adapt,dm,dofPerDim,&transferForward,&transferBackward));
35639566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(plex,&pStart,&pEnd));
35649566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(adaptPlex,&pStartA,&pEndA));
35659566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(pEnd-pStart,&values,pEndA-pStartA,&adaptValues));
35669566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(plex,&pointSF));
35670a96aa3bSJed Brown     if (PetscDefined(USE_DEBUG)) {
35680a96aa3bSJed Brown       PetscInt p;
35690a96aa3bSJed Brown       for (p = pStartA; p < pEndA; p++) adaptValues[p-pStartA] = -1;
35700a96aa3bSJed Brown       for (p = pStart; p < pEnd; p++)   values[p-pStart]       = -2;
35710a96aa3bSJed Brown       if (transferForward) {
35729566063dSJacob Faibussowitsch         PetscCall(PetscSFBcastBegin(transferForward,MPIU_INT,adaptValues,values,MPI_REPLACE));
35739566063dSJacob Faibussowitsch         PetscCall(PetscSFBcastEnd(transferForward,MPIU_INT,adaptValues,values,MPI_REPLACE));
35740a96aa3bSJed Brown       }
35750a96aa3bSJed Brown       if (transferBackward) {
3576*57168dbeSPierre Jolivet         PetscCall(PetscSFReduceBegin(transferBackward,MPIU_INT,adaptValues,values,MPI_MAX));
3577*57168dbeSPierre Jolivet         PetscCall(PetscSFReduceEnd(transferBackward,MPIU_INT,adaptValues,values,MPI_MAX));
35780a96aa3bSJed Brown       }
35790a96aa3bSJed Brown       for (p = pStart; p < pEnd; p++) {
35800a96aa3bSJed Brown         PetscInt q = p, parent;
35810a96aa3bSJed Brown 
35829566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTreeParent(plex,q,&parent,NULL));
35830a96aa3bSJed Brown         while (parent != q) {
35840a96aa3bSJed Brown           if (values[parent] == -2) values[parent] = values[q];
35850a96aa3bSJed Brown           q    = parent;
35869566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeParent(plex,q,&parent,NULL));
35870a96aa3bSJed Brown         }
35880a96aa3bSJed Brown       }
3589*57168dbeSPierre Jolivet       PetscCall(PetscSFReduceBegin(pointSF,MPIU_INT,values,values,MPI_MAX));
3590*57168dbeSPierre Jolivet       PetscCall(PetscSFReduceEnd(pointSF,MPIU_INT,values,values,MPI_MAX));
35919566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointSF,MPIU_INT,values,values,MPI_REPLACE));
35929566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointSF,MPIU_INT,values,values,MPI_REPLACE));
35930a96aa3bSJed Brown       for (p = pStart; p < pEnd; p++) {
359463a3b9bcSJacob Faibussowitsch         PetscCheck(values[p-pStart] != -2,PETSC_COMM_SELF,PETSC_ERR_PLIB,"uncovered point %" PetscInt_FMT,p);
35950a96aa3bSJed Brown       }
35960a96aa3bSJed Brown     }
35970a96aa3bSJed Brown     while (next) {
35980a96aa3bSJed Brown       DMLabel    nextLabel = next->label;
35990a96aa3bSJed Brown       const char *name;
36000a96aa3bSJed Brown       PetscBool  isDepth, isCellType, isGhost, isVTK;
36010a96aa3bSJed Brown       DMLabel    label;
36020a96aa3bSJed Brown       PetscInt   p;
36030a96aa3bSJed Brown 
36049566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject) nextLabel, &name));
36059566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name,"depth",&isDepth));
36060a96aa3bSJed Brown       if (isDepth) {
36070a96aa3bSJed Brown         next = next->next;
36080a96aa3bSJed Brown         continue;
36090a96aa3bSJed Brown       }
36109566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name,"celltype",&isCellType));
36110a96aa3bSJed Brown       if (isCellType) {
36120a96aa3bSJed Brown         next = next->next;
36130a96aa3bSJed Brown         continue;
36140a96aa3bSJed Brown       }
36159566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name,"ghost",&isGhost));
36160a96aa3bSJed Brown       if (isGhost) {
36170a96aa3bSJed Brown         next = next->next;
36180a96aa3bSJed Brown         continue;
36190a96aa3bSJed Brown       }
36209566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name,"vtk",&isVTK));
36210a96aa3bSJed Brown       if (isVTK) {
36220a96aa3bSJed Brown         next = next->next;
36230a96aa3bSJed Brown         continue;
36240a96aa3bSJed Brown       }
36250a96aa3bSJed Brown       if (nextLabel == adaptLabel) {
36260a96aa3bSJed Brown         next = next->next;
36270a96aa3bSJed Brown         continue;
36280a96aa3bSJed Brown       }
36290a96aa3bSJed Brown       /* label was created earlier */
36309566063dSJacob Faibussowitsch       PetscCall(DMGetLabel(dm,name,&label));
36310a96aa3bSJed Brown       for (p = pStartA; p < pEndA; p++) {
36329566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(nextLabel,p,&adaptValues[p]));
36330a96aa3bSJed Brown       }
36340a96aa3bSJed Brown       for (p = pStart; p < pEnd; p++) values[p] = PETSC_MIN_INT;
36350a96aa3bSJed Brown 
36361baa6e33SBarry Smith       if (transferForward) PetscCall(PetscSFBcastBegin(transferForward,MPIU_INT,adaptValues,values,MPI_REPLACE));
3637*57168dbeSPierre Jolivet       if (transferBackward) PetscCall(PetscSFReduceBegin(transferBackward,MPIU_INT,adaptValues,values,MPI_MAX));
36381baa6e33SBarry Smith       if (transferForward) PetscCall(PetscSFBcastEnd(transferForward,MPIU_INT,adaptValues,values,MPI_REPLACE));
3639*57168dbeSPierre Jolivet       if (transferBackward) PetscCall(PetscSFReduceEnd(transferBackward,MPIU_INT,adaptValues,values,MPI_MAX));
36400a96aa3bSJed Brown       for (p = pStart; p < pEnd; p++) {
36410a96aa3bSJed Brown         PetscInt q = p, parent;
36420a96aa3bSJed Brown 
36439566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTreeParent(plex,q,&parent,NULL));
36440a96aa3bSJed Brown         while (parent != q) {
36450a96aa3bSJed Brown           if (values[parent] == PETSC_MIN_INT) values[parent] = values[q];
36460a96aa3bSJed Brown           q    = parent;
36479566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeParent(plex,q,&parent,NULL));
36480a96aa3bSJed Brown         }
36490a96aa3bSJed Brown       }
3650*57168dbeSPierre Jolivet       PetscCall(PetscSFReduceBegin(pointSF,MPIU_INT,values,values,MPI_MAX));
3651*57168dbeSPierre Jolivet       PetscCall(PetscSFReduceEnd(pointSF,MPIU_INT,values,values,MPI_MAX));
36529566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(pointSF,MPIU_INT,values,values,MPI_REPLACE));
36539566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(pointSF,MPIU_INT,values,values,MPI_REPLACE));
36540a96aa3bSJed Brown 
36550a96aa3bSJed Brown       for (p = pStart; p < pEnd; p++) {
36569566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(label,p,values[p]));
36570a96aa3bSJed Brown       }
36580a96aa3bSJed Brown       next = next->next;
36590a96aa3bSJed Brown     }
36609566063dSJacob Faibussowitsch     PetscCall(PetscFree2(values,adaptValues));
36619566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&transferForward));
36629566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&transferBackward));
36630a96aa3bSJed Brown     pforest->labelsFinalized = PETSC_TRUE;
36640a96aa3bSJed Brown   }
36650a96aa3bSJed Brown   PetscFunctionReturn(0);
36660a96aa3bSJed Brown }
36670a96aa3bSJed Brown 
36680a96aa3bSJed Brown static PetscErrorCode DMPforestMapCoordinates_Cell(DM plex, p4est_geometry_t *geom, PetscInt cell, p4est_quadrant_t *q, p4est_topidx_t t, p4est_connectivity_t * conn, PetscScalar *coords)
36690a96aa3bSJed Brown {
36700a96aa3bSJed Brown   PetscInt       closureSize, c, coordStart, coordEnd, coordDim;
36710a96aa3bSJed Brown   PetscInt       *closure = NULL;
36720a96aa3bSJed Brown   PetscSection   coordSec;
36730a96aa3bSJed Brown 
36740a96aa3bSJed Brown   PetscFunctionBegin;
36759566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(plex,&coordSec));
36769566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(coordSec,&coordStart,&coordEnd));
36779566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(plex,&coordDim));
36789566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTransitiveClosure(plex,cell,PETSC_TRUE,&closureSize,&closure));
36790a96aa3bSJed Brown   for (c = 0; c < closureSize; c++) {
36800a96aa3bSJed Brown     PetscInt point = closure[2 * c];
36810a96aa3bSJed Brown 
36820a96aa3bSJed Brown     if (point >= coordStart && point < coordEnd) {
36830a96aa3bSJed Brown       PetscInt dof, off;
36840a96aa3bSJed Brown       PetscInt nCoords, i;
36859566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSec,point,&dof));
368608401ef6SPierre Jolivet       PetscCheck(dof % coordDim == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Did not understand coordinate layout");
36870a96aa3bSJed Brown       nCoords = dof / coordDim;
36889566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSec,point,&off));
36890a96aa3bSJed Brown       for (i = 0; i < nCoords; i++) {
36900a96aa3bSJed Brown         PetscScalar *coord              = &coords[off + i * coordDim];
36910a96aa3bSJed Brown         double      coordP4est[3]       = {0.};
36920a96aa3bSJed Brown         double      coordP4estMapped[3] = {0.};
36930a96aa3bSJed Brown         PetscInt    j;
36940a96aa3bSJed Brown         PetscReal   treeCoords[P4EST_CHILDREN][3] = {{0.}};
36950a96aa3bSJed Brown         PetscReal   eta[3]                        = {0.};
36960a96aa3bSJed Brown         PetscInt    numRounds                     = 10;
36970a96aa3bSJed Brown         PetscReal   coordGuess[3]                 = {0.};
36980a96aa3bSJed Brown 
36990a96aa3bSJed Brown         eta[0] = (PetscReal) q->x / (PetscReal) P4EST_ROOT_LEN;
37000a96aa3bSJed Brown         eta[1] = (PetscReal) q->y / (PetscReal) P4EST_ROOT_LEN;
37010a96aa3bSJed Brown #if defined(P4_TO_P8)
37020a96aa3bSJed Brown         eta[2] = (PetscReal) q->z / (PetscReal) P4EST_ROOT_LEN;
37030a96aa3bSJed Brown #endif
37040a96aa3bSJed Brown 
37050a96aa3bSJed Brown         for (j = 0; j < P4EST_CHILDREN; j++) {
37060a96aa3bSJed Brown           PetscInt k;
37070a96aa3bSJed Brown 
37080a96aa3bSJed Brown           for (k = 0; k < 3; k++) treeCoords[j][k] = conn->vertices[3 * conn->tree_to_vertex[P4EST_CHILDREN * t + j] + k];
37090a96aa3bSJed Brown         }
37100a96aa3bSJed Brown 
37110a96aa3bSJed Brown         for (j = 0; j < P4EST_CHILDREN; j++) {
37120a96aa3bSJed Brown           PetscInt  k;
37130a96aa3bSJed Brown           PetscReal prod = 1.;
37140a96aa3bSJed Brown 
37150a96aa3bSJed Brown           for (k = 0; k < P4EST_DIM; k++) prod *= (j & (1 << k)) ? eta[k] : (1. - eta[k]);
37160a96aa3bSJed Brown           for (k = 0; k < 3; k++) coordGuess[k] += prod * treeCoords[j][k];
37170a96aa3bSJed Brown         }
37180a96aa3bSJed Brown 
37190a96aa3bSJed Brown         for (j = 0; j < numRounds; j++) {
37200a96aa3bSJed Brown           PetscInt dir;
37210a96aa3bSJed Brown 
37220a96aa3bSJed Brown           for (dir = 0; dir < P4EST_DIM; dir++) {
37230a96aa3bSJed Brown             PetscInt  k;
37240a96aa3bSJed Brown             PetscReal diff[3];
37250a96aa3bSJed Brown             PetscReal dXdeta[3] = {0.};
37260a96aa3bSJed Brown             PetscReal rhs, scale, update;
37270a96aa3bSJed Brown 
37280a96aa3bSJed Brown             for (k = 0; k < 3; k++) diff[k] = coordP4est[k] - coordGuess[k];
37290a96aa3bSJed Brown             for (k = 0; k < P4EST_CHILDREN; k++) {
37300a96aa3bSJed Brown               PetscInt  l;
37310a96aa3bSJed Brown               PetscReal prod = 1.;
37320a96aa3bSJed Brown 
37330a96aa3bSJed Brown               for (l = 0; l < P4EST_DIM; l++) {
37340a96aa3bSJed Brown                 if (l == dir) {
37350a96aa3bSJed Brown                   prod *= (k & (1 << l)) ?  1. : -1.;
37360a96aa3bSJed Brown                 } else {
37370a96aa3bSJed Brown                   prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]);
37380a96aa3bSJed Brown                 }
37390a96aa3bSJed Brown               }
37400a96aa3bSJed Brown               for (l = 0; l < 3; l++) dXdeta[l] += prod * treeCoords[k][l];
37410a96aa3bSJed Brown             }
37420a96aa3bSJed Brown             rhs   = 0.;
37430a96aa3bSJed Brown             scale = 0;
37440a96aa3bSJed Brown             for (k = 0; k < 3; k++) {
37450a96aa3bSJed Brown               rhs   += diff[k] * dXdeta[k];
37460a96aa3bSJed Brown               scale += dXdeta[k] * dXdeta[k];
37470a96aa3bSJed Brown             }
37480a96aa3bSJed Brown             update    = rhs / scale;
37490a96aa3bSJed Brown             eta[dir] += update;
37500a96aa3bSJed Brown             eta[dir]  = PetscMin(eta[dir],1.);
37510a96aa3bSJed Brown             eta[dir]  = PetscMax(eta[dir],0.);
37520a96aa3bSJed Brown 
37530a96aa3bSJed Brown             coordGuess[0] = coordGuess[1] = coordGuess[2] = 0.;
37540a96aa3bSJed Brown             for (k = 0; k < P4EST_CHILDREN; k++) {
37550a96aa3bSJed Brown               PetscInt  l;
37560a96aa3bSJed Brown               PetscReal prod = 1.;
37570a96aa3bSJed Brown 
37580a96aa3bSJed Brown               for (l = 0; l < P4EST_DIM; l++) prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]);
37590a96aa3bSJed Brown               for (l = 0; l < 3; l++) coordGuess[l] += prod * treeCoords[k][l];
37600a96aa3bSJed Brown             }
37610a96aa3bSJed Brown           }
37620a96aa3bSJed Brown         }
37630a96aa3bSJed Brown         for (j = 0; j < 3; j++) coordP4est[j] = (double) eta[j];
37640a96aa3bSJed Brown 
37650a96aa3bSJed Brown         if (geom) {
37660a96aa3bSJed Brown           (geom->X)(geom,t,coordP4est,coordP4estMapped);
37670a96aa3bSJed Brown           for (j = 0; j < coordDim; j++) coord[j] = (PetscScalar) coordP4estMapped[j];
37680a96aa3bSJed Brown         } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded");
37690a96aa3bSJed Brown       }
37700a96aa3bSJed Brown     }
37710a96aa3bSJed Brown   }
37729566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreTransitiveClosure(plex,cell,PETSC_TRUE,&closureSize,&closure));
37730a96aa3bSJed Brown   PetscFunctionReturn(0);
37740a96aa3bSJed Brown }
37750a96aa3bSJed Brown 
37760a96aa3bSJed Brown static PetscErrorCode DMPforestMapCoordinates(DM dm, DM plex)
37770a96aa3bSJed Brown {
37780a96aa3bSJed Brown   DM_Forest         *forest;
37790a96aa3bSJed Brown   DM_Forest_pforest *pforest;
37800a96aa3bSJed Brown   p4est_geometry_t  *geom;
37810a96aa3bSJed Brown   PetscInt          cLocalStart, cLocalEnd;
37820a96aa3bSJed Brown   Vec               coordLocalVec;
37830a96aa3bSJed Brown   PetscScalar       *coords;
37840a96aa3bSJed Brown   p4est_topidx_t    flt, llt, t;
37850a96aa3bSJed Brown   p4est_tree_t      *trees;
37860a96aa3bSJed Brown   PetscErrorCode    (*map)(DM,PetscInt, PetscInt, const PetscReal [], PetscReal [], void*);
37870a96aa3bSJed Brown   void              *mapCtx;
37880a96aa3bSJed Brown 
37890a96aa3bSJed Brown   PetscFunctionBegin;
37900a96aa3bSJed Brown   forest  = (DM_Forest*) dm->data;
37910a96aa3bSJed Brown   pforest = (DM_Forest_pforest*) forest->data;
37920a96aa3bSJed Brown   geom    = pforest->topo->geom;
37939566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseCoordinateMapping(dm,&map,&mapCtx));
37940a96aa3bSJed Brown   if (!geom && !map) PetscFunctionReturn(0);
37959566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(plex,&coordLocalVec));
37969566063dSJacob Faibussowitsch   PetscCall(VecGetArray(coordLocalVec,&coords));
37970a96aa3bSJed Brown   cLocalStart = pforest->cLocalStart;
37980a96aa3bSJed Brown   cLocalEnd   = pforest->cLocalEnd;
37990a96aa3bSJed Brown   flt         = pforest->forest->first_local_tree;
38000a96aa3bSJed Brown   llt         = pforest->forest->last_local_tree;
38010a96aa3bSJed Brown   trees       = (p4est_tree_t*) pforest->forest->trees->array;
38020a96aa3bSJed Brown   if (map) { /* apply the map directly to the existing coordinates */
38030a96aa3bSJed Brown     PetscSection coordSec;
38040a96aa3bSJed Brown     PetscInt     coordStart, coordEnd, p, coordDim, p4estCoordDim, cStart, cEnd, cEndInterior;
38050a96aa3bSJed Brown     DM           base;
38060a96aa3bSJed Brown 
38079566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(plex,0,&cStart,&cEnd));
38089566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGhostCellStratum(plex,&cEndInterior,NULL));
38090a96aa3bSJed Brown     cEnd          = cEndInterior < 0 ? cEnd : cEndInterior;
38109566063dSJacob Faibussowitsch     PetscCall(DMForestGetBaseDM(dm,&base));
38119566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(plex,&coordSec));
38129566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(coordSec,&coordStart,&coordEnd));
38139566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(plex,&coordDim));
38140a96aa3bSJed Brown     p4estCoordDim = PetscMin(coordDim,3);
38150a96aa3bSJed Brown     for (p = coordStart; p < coordEnd; p++) {
38160a96aa3bSJed Brown       PetscInt *star = NULL, starSize;
38170a96aa3bSJed Brown       PetscInt dof, off, cell = -1, coarsePoint = -1;
38180a96aa3bSJed Brown       PetscInt nCoords, i;
38199566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSec,p,&dof));
382008401ef6SPierre Jolivet       PetscCheck(dof % coordDim == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Did not understand coordinate layout");
38210a96aa3bSJed Brown       nCoords = dof / coordDim;
38229566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSec,p,&off));
38239566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(plex,p,PETSC_FALSE,&starSize,&star));
38240a96aa3bSJed Brown       for (i = 0; i < starSize; i++) {
38250a96aa3bSJed Brown         PetscInt point = star[2 * i];
38260a96aa3bSJed Brown 
38270a96aa3bSJed Brown         if (cStart <= point && point < cEnd) {
38280a96aa3bSJed Brown           cell = point;
38290a96aa3bSJed Brown           break;
38300a96aa3bSJed Brown         }
38310a96aa3bSJed Brown       }
38329566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(plex,p,PETSC_FALSE,&starSize,&star));
38330a96aa3bSJed Brown       if (cell >= 0) {
38340a96aa3bSJed Brown         if (cell < cLocalStart) {
38350a96aa3bSJed Brown           p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array;
38360a96aa3bSJed Brown 
38370a96aa3bSJed Brown           coarsePoint = ghosts[cell].p.which_tree;
38380a96aa3bSJed Brown         } else if (cell < cLocalEnd) {
38390a96aa3bSJed Brown           cell -= cLocalStart;
38400a96aa3bSJed Brown           for (t = flt; t <= llt; t++) {
38410a96aa3bSJed Brown             p4est_tree_t *tree = &(trees[t]);
38420a96aa3bSJed Brown 
38430a96aa3bSJed Brown             if (cell >= tree->quadrants_offset && (size_t) cell < tree->quadrants_offset + tree->quadrants.elem_count) {
38440a96aa3bSJed Brown               coarsePoint = t;
38450a96aa3bSJed Brown               break;
38460a96aa3bSJed Brown             }
38470a96aa3bSJed Brown           }
38480a96aa3bSJed Brown         } else {
38490a96aa3bSJed Brown           p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array;
38500a96aa3bSJed Brown 
38510a96aa3bSJed Brown           coarsePoint = ghosts[cell - cLocalEnd].p.which_tree;
38520a96aa3bSJed Brown         }
38530a96aa3bSJed Brown       }
38540a96aa3bSJed Brown       for (i = 0; i < nCoords; i++) {
38550a96aa3bSJed Brown         PetscScalar *coord              = &coords[off + i * coordDim];
38560a96aa3bSJed Brown         PetscReal   coordP4est[3]       = {0.};
38570a96aa3bSJed Brown         PetscReal   coordP4estMapped[3] = {0.};
38580a96aa3bSJed Brown         PetscInt    j;
38590a96aa3bSJed Brown 
38600a96aa3bSJed Brown         for (j = 0; j < p4estCoordDim; j++) coordP4est[j] = PetscRealPart(coord[j]);
38619566063dSJacob Faibussowitsch         PetscCall((map)(base,coarsePoint,p4estCoordDim,coordP4est,coordP4estMapped,mapCtx));
38620a96aa3bSJed Brown         for (j = 0; j < p4estCoordDim; j++) coord[j] = (PetscScalar) coordP4estMapped[j];
38630a96aa3bSJed Brown       }
38640a96aa3bSJed Brown     }
38650a96aa3bSJed Brown   } else { /* we have to transform coordinates back to the unit cube (where geom is defined), and then apply geom */
38660a96aa3bSJed Brown     PetscInt cStart, cEnd, cEndInterior;
38670a96aa3bSJed Brown 
38689566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(plex,0,&cStart,&cEnd));
38699566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGhostCellStratum(plex,&cEndInterior,NULL));
38700a96aa3bSJed Brown     cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
38710a96aa3bSJed Brown     if (cLocalStart > 0) {
38720a96aa3bSJed Brown       p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array;
38730a96aa3bSJed Brown       PetscInt         count;
38740a96aa3bSJed Brown 
38750a96aa3bSJed Brown       for (count = 0; count < cLocalStart; count++) {
38760a96aa3bSJed Brown         p4est_quadrant_t *quad = &ghosts[count];
38770a96aa3bSJed Brown         p4est_topidx_t   t     = quad->p.which_tree;
38780a96aa3bSJed Brown 
38799566063dSJacob Faibussowitsch         PetscCall(DMPforestMapCoordinates_Cell(plex,geom,count,quad,t,pforest->topo->conn,coords));
38800a96aa3bSJed Brown       }
38810a96aa3bSJed Brown     }
38820a96aa3bSJed Brown     for (t = flt; t <= llt; t++) {
38830a96aa3bSJed Brown       p4est_tree_t     *tree    = &(trees[t]);
38840a96aa3bSJed Brown       PetscInt         offset   = cLocalStart + tree->quadrants_offset, i;
38850a96aa3bSJed Brown       PetscInt         numQuads = (PetscInt) tree->quadrants.elem_count;
38860a96aa3bSJed Brown       p4est_quadrant_t *quads   = (p4est_quadrant_t*) tree->quadrants.array;
38870a96aa3bSJed Brown 
38880a96aa3bSJed Brown       for (i = 0; i < numQuads; i++) {
38890a96aa3bSJed Brown         PetscInt count = i + offset;
38900a96aa3bSJed Brown 
38919566063dSJacob Faibussowitsch         PetscCall(DMPforestMapCoordinates_Cell(plex,geom,count,&quads[i],t,pforest->topo->conn,coords));
38920a96aa3bSJed Brown       }
38930a96aa3bSJed Brown     }
38940a96aa3bSJed Brown     if (cLocalEnd - cLocalStart < cEnd - cStart) {
38950a96aa3bSJed Brown       p4est_quadrant_t *ghosts   = (p4est_quadrant_t*) pforest->ghost->ghosts.array;
38960a96aa3bSJed Brown       PetscInt         numGhosts = (PetscInt) pforest->ghost->ghosts.elem_count;
38970a96aa3bSJed Brown       PetscInt         count;
38980a96aa3bSJed Brown 
38990a96aa3bSJed Brown       for (count = 0; count < numGhosts - cLocalStart; count++) {
39000a96aa3bSJed Brown         p4est_quadrant_t *quad = &ghosts[count + cLocalStart];
39010a96aa3bSJed Brown         p4est_topidx_t   t     = quad->p.which_tree;
39020a96aa3bSJed Brown 
39039566063dSJacob Faibussowitsch         PetscCall(DMPforestMapCoordinates_Cell(plex,geom,count + cLocalEnd,quad,t,pforest->topo->conn,coords));
39040a96aa3bSJed Brown       }
39050a96aa3bSJed Brown     }
39060a96aa3bSJed Brown   }
39079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(coordLocalVec,&coords));
39080a96aa3bSJed Brown   PetscFunctionReturn(0);
39090a96aa3bSJed Brown }
39100a96aa3bSJed Brown 
3911852b71a7SToby Isaac static PetscErrorCode PforestQuadrantIsInterior (p4est_quadrant_t *quad, PetscBool *is_interior)
3912852b71a7SToby Isaac {
3913852b71a7SToby Isaac   PetscFunctionBegin;
3914852b71a7SToby Isaac   p4est_qcoord_t h = P4EST_QUADRANT_LEN (quad->level);
3915852b71a7SToby Isaac   if ((quad->x > 0) && (quad->x + h < P4EST_ROOT_LEN)
3916852b71a7SToby Isaac #ifdef P4_TO_P8
3917852b71a7SToby Isaac       && (quad->z > 0) && (quad->z + h < P4EST_ROOT_LEN)
3918852b71a7SToby Isaac #endif
3919852b71a7SToby Isaac       && (quad->y > 0) && (quad->y + h < P4EST_ROOT_LEN)) {
3920852b71a7SToby Isaac     *is_interior = PETSC_TRUE;
3921852b71a7SToby Isaac   } else {
3922852b71a7SToby Isaac     *is_interior = PETSC_FALSE;
3923852b71a7SToby Isaac   }
3924852b71a7SToby Isaac   PetscFunctionReturn(0);
3925852b71a7SToby Isaac }
3926852b71a7SToby Isaac 
3927852b71a7SToby Isaac /* We always use DG coordinates with p4est: if they do not match the vertex
3928852b71a7SToby Isaac    coordinates, add space for them in the section */
3929852b71a7SToby Isaac static PetscErrorCode PforestCheckLocalizeCell(DM plex, PetscInt cDim, Vec cVecOld, DM_Forest_pforest *pforest, PetscSection oldSection, PetscSection newSection, PetscInt cell, PetscInt coarsePoint, p4est_quadrant_t *quad)
3930852b71a7SToby Isaac {
3931852b71a7SToby Isaac   PetscBool is_interior;
3932852b71a7SToby Isaac 
3933852b71a7SToby Isaac   PetscFunctionBegin;
3934852b71a7SToby Isaac   PetscCall(PforestQuadrantIsInterior(quad, &is_interior));
3935852b71a7SToby Isaac   if (is_interior) { // quads in the interior of a coarse cell can't touch periodic interfaces
3936852b71a7SToby Isaac     PetscCall(PetscSectionSetDof(newSection, cell, 0));
3937852b71a7SToby Isaac     PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, 0));
3938852b71a7SToby Isaac   } else {
3939852b71a7SToby Isaac     PetscInt     cSize;
3940852b71a7SToby Isaac     PetscScalar *values = NULL;
3941852b71a7SToby Isaac     PetscBool    same_coords = PETSC_TRUE;
3942852b71a7SToby Isaac 
3943852b71a7SToby Isaac     PetscCall(DMPlexVecGetClosure(plex, oldSection, cVecOld, cell, &cSize, &values));
3944852b71a7SToby Isaac     PetscAssert(cSize == cDim * P4EST_CHILDREN, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected closure size");
3945852b71a7SToby Isaac     for (int c = 0; c < P4EST_CHILDREN; c++) {
3946852b71a7SToby Isaac       p4est_qcoord_t quad_coords[3];
3947852b71a7SToby Isaac       p4est_qcoord_t h = P4EST_QUADRANT_LEN (quad->level);
3948852b71a7SToby Isaac       double         corner_coords[3];
3949852b71a7SToby Isaac       double         vert_coords[3];
3950852b71a7SToby Isaac       PetscInt corner = PetscVertToP4estVert[c];
3951852b71a7SToby Isaac 
3952852b71a7SToby Isaac       for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) {
3953852b71a7SToby Isaac         vert_coords[d] = PetscRealPart(values[c * cDim + d]);
3954852b71a7SToby Isaac       }
3955852b71a7SToby Isaac 
3956852b71a7SToby Isaac       quad_coords[0] = quad->x;
3957852b71a7SToby Isaac       quad_coords[1] = quad->y;
3958852b71a7SToby Isaac #ifdef P4_TO_P8
3959852b71a7SToby Isaac       quad_coords[2] = quad->z;
3960852b71a7SToby Isaac #endif
3961852b71a7SToby Isaac       for (int d = 0; d < 3; d++) {
3962852b71a7SToby Isaac         quad_coords[d] += (corner & (1 << d)) ? h : 0;
3963852b71a7SToby Isaac       }
3964852b71a7SToby Isaac #ifndef P4_TO_P8
3965648bc8c4SBarry Smith       PetscCallP4est(p4est_qcoord_to_vertex,(pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], corner_coords));
3966852b71a7SToby Isaac #else
3967648bc8c4SBarry Smith       PetscCallP4est(p4est_qcoord_to_vertex,(pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], quad_coords[2], corner_coords));
3968852b71a7SToby Isaac #endif
3969852b71a7SToby Isaac       for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) {
3970852b71a7SToby Isaac         if (fabs (vert_coords[d] - corner_coords[d]) > PETSC_SMALL) {
3971852b71a7SToby Isaac           same_coords = PETSC_FALSE;
3972852b71a7SToby Isaac           break;
3973852b71a7SToby Isaac         }
3974852b71a7SToby Isaac       }
3975852b71a7SToby Isaac     }
3976852b71a7SToby Isaac     if (same_coords) {
3977852b71a7SToby Isaac       PetscCall(PetscSectionSetDof(newSection, cell, 0));
3978852b71a7SToby Isaac       PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, 0));
3979852b71a7SToby Isaac     } else {
3980852b71a7SToby Isaac       PetscCall(PetscSectionSetDof(newSection, cell, cSize));
3981852b71a7SToby Isaac       PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, cSize));
3982852b71a7SToby Isaac     }
3983852b71a7SToby Isaac     PetscCall(DMPlexVecRestoreClosure(plex, oldSection, cVecOld, cell, &cSize, &values));
3984852b71a7SToby Isaac   }
3985852b71a7SToby Isaac   PetscFunctionReturn(0);
3986852b71a7SToby Isaac }
3987852b71a7SToby Isaac 
3988852b71a7SToby Isaac static PetscErrorCode PforestLocalizeCell(DM plex, PetscInt cDim, DM_Forest_pforest *pforest, PetscSection newSection, PetscInt cell, PetscInt coarsePoint, p4est_quadrant_t *quad, PetscScalar coords[])
3989852b71a7SToby Isaac {
3990852b71a7SToby Isaac   PetscInt  cdof, off;
3991852b71a7SToby Isaac 
3992852b71a7SToby Isaac   PetscFunctionBegin;
3993852b71a7SToby Isaac   PetscCall(PetscSectionGetDof(newSection, cell, &cdof));
3994852b71a7SToby Isaac   if (!cdof) PetscFunctionReturn(0);
3995852b71a7SToby Isaac 
3996852b71a7SToby Isaac   PetscCall(PetscSectionGetOffset(newSection, cell, &off));
3997852b71a7SToby Isaac   for (PetscInt c = 0, pos = off; c < P4EST_CHILDREN; c++) {
3998852b71a7SToby Isaac     p4est_qcoord_t quad_coords[3];
3999852b71a7SToby Isaac     p4est_qcoord_t h = P4EST_QUADRANT_LEN (quad->level);
4000852b71a7SToby Isaac     double         corner_coords[3];
4001852b71a7SToby Isaac     PetscInt corner = PetscVertToP4estVert[c];
4002852b71a7SToby Isaac 
4003852b71a7SToby Isaac     quad_coords[0] = quad->x;
4004852b71a7SToby Isaac     quad_coords[1] = quad->y;
4005852b71a7SToby Isaac #ifdef P4_TO_P8
4006852b71a7SToby Isaac     quad_coords[2] = quad->z;
4007852b71a7SToby Isaac #endif
4008852b71a7SToby Isaac     for (int d = 0; d < 3; d++) {
4009852b71a7SToby Isaac       quad_coords[d] += (corner & (1 << d)) ? h : 0;
4010852b71a7SToby Isaac     }
4011852b71a7SToby Isaac #ifndef P4_TO_P8
4012648bc8c4SBarry Smith     PetscCallP4est(p4est_qcoord_to_vertex,(pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], corner_coords));
4013852b71a7SToby Isaac #else
4014648bc8c4SBarry Smith     PetscCallP4est(p4est_qcoord_to_vertex,(pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], quad_coords[2], corner_coords));
4015852b71a7SToby Isaac #endif
4016852b71a7SToby Isaac     for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) {
4017852b71a7SToby Isaac       coords[pos++] = corner_coords[d];
4018852b71a7SToby Isaac     }
4019852b71a7SToby Isaac     for (PetscInt d = PetscMin(cDim, 3); d < cDim; d++) {
4020852b71a7SToby Isaac       coords[pos++] = 0.;
4021852b71a7SToby Isaac     }
4022852b71a7SToby Isaac   }
4023852b71a7SToby Isaac   PetscFunctionReturn(0);
4024852b71a7SToby Isaac }
4025852b71a7SToby Isaac 
40260a96aa3bSJed Brown static PetscErrorCode DMPforestLocalizeCoordinates(DM dm, DM plex)
40270a96aa3bSJed Brown {
40280a96aa3bSJed Brown   DM_Forest         *forest;
40290a96aa3bSJed Brown   DM_Forest_pforest *pforest;
40306858538eSMatthew G. Knepley   DM                base, cdm, cdmCell;
4031852b71a7SToby Isaac   Vec               cVec, cVecOld;
4032852b71a7SToby Isaac   PetscSection      oldSection, newSection;
40330a96aa3bSJed Brown   PetscScalar       *coords2;
40346858538eSMatthew G. Knepley   const PetscReal   *L;
40350a96aa3bSJed Brown   PetscInt          cLocalStart, cLocalEnd, coarsePoint;
4036852b71a7SToby Isaac   PetscInt          cDim, newStart, newEnd;
4037852b71a7SToby Isaac   PetscInt          v, vStart, vEnd, cp, cStart, cEnd, cEndInterior;
40380a96aa3bSJed Brown   p4est_topidx_t    flt, llt, t;
40390a96aa3bSJed Brown   p4est_tree_t      *trees;
40406858538eSMatthew G. Knepley   PetscBool         baseLocalized = PETSC_FALSE;
40410a96aa3bSJed Brown 
40420a96aa3bSJed Brown   PetscFunctionBegin;
40434fb89dddSMatthew G. Knepley   PetscCall(DMGetPeriodicity(dm,NULL,NULL,&L));
40440a96aa3bSJed Brown   /* we localize on all cells if we don't have a base DM or the base DM coordinates have not been localized */
40459566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cDim));
40469566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm,&base));
40476858538eSMatthew G. Knepley   if (base) PetscCall(DMGetCoordinatesLocalized(base,&baseLocalized));
40480a96aa3bSJed Brown   if (!baseLocalized) base = NULL;
40496858538eSMatthew G. Knepley   if (!baseLocalized && !L) PetscFunctionReturn(0);
40509566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plex, &newStart, &newEnd));
40510a96aa3bSJed Brown 
40529566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject) dm), &newSection));
40539566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(newSection, 1));
40549566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetFieldComponents(newSection, 0, cDim));
40559566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(newSection, newStart, newEnd));
40560a96aa3bSJed Brown 
40579566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(plex, &oldSection));
40589566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(plex, 0, &vStart, &vEnd));
4059852b71a7SToby Isaac   PetscCall(DMGetCoordinatesLocal(plex, &cVecOld));
40600a96aa3bSJed Brown 
40610a96aa3bSJed Brown   forest      = (DM_Forest*) dm->data;
40620a96aa3bSJed Brown   pforest     = (DM_Forest_pforest*) forest->data;
40630a96aa3bSJed Brown   cLocalStart = pforest->cLocalStart;
40640a96aa3bSJed Brown   cLocalEnd   = pforest->cLocalEnd;
40650a96aa3bSJed Brown   flt         = pforest->forest->first_local_tree;
40660a96aa3bSJed Brown   llt         = pforest->forest->last_local_tree;
40670a96aa3bSJed Brown   trees       = (p4est_tree_t*) pforest->forest->trees->array;
40680a96aa3bSJed Brown 
40699566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd));
40709566063dSJacob Faibussowitsch   PetscCall(DMPlexGetGhostCellStratum(plex, &cEndInterior, NULL));
40710a96aa3bSJed Brown   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
4072852b71a7SToby Isaac   cp = 0;
40730a96aa3bSJed Brown   if (cLocalStart > 0) {
40740a96aa3bSJed Brown     p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array;
4075852b71a7SToby Isaac     PetscInt         cell;
40760a96aa3bSJed Brown 
4077852b71a7SToby Isaac     for (cell = 0; cell < cLocalStart; ++cell, cp++) {
4078852b71a7SToby Isaac       p4est_quadrant_t *quad = &ghosts[cell];
4079852b71a7SToby Isaac 
40800a96aa3bSJed Brown       coarsePoint = quad->p.which_tree;
4081852b71a7SToby Isaac       PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad));
40820a96aa3bSJed Brown     }
40830a96aa3bSJed Brown   }
40840a96aa3bSJed Brown   for (t = flt; t <= llt; t++) {
40850a96aa3bSJed Brown     p4est_tree_t *tree    = &(trees[t]);
40860a96aa3bSJed Brown     PetscInt     offset   = cLocalStart + tree->quadrants_offset;
40870a96aa3bSJed Brown     PetscInt     numQuads = (PetscInt) tree->quadrants.elem_count;
4088852b71a7SToby Isaac     p4est_quadrant_t *quads = (p4est_quadrant_t *) tree->quadrants.array;
40890a96aa3bSJed Brown     PetscInt     i;
40900a96aa3bSJed Brown 
40910a96aa3bSJed Brown     if (!numQuads) continue;
40920a96aa3bSJed Brown     coarsePoint = t;
4093852b71a7SToby Isaac     for (i = 0; i < numQuads; i++, cp++) {
4094852b71a7SToby Isaac       PetscInt cell = i + offset;
4095852b71a7SToby Isaac       p4est_quadrant_t * quad = &quads[i];
40960a96aa3bSJed Brown 
4097852b71a7SToby Isaac       PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad));
40980a96aa3bSJed Brown     }
40990a96aa3bSJed Brown   }
41000a96aa3bSJed Brown   if (cLocalEnd - cLocalStart < cEnd - cStart) {
41010a96aa3bSJed Brown     p4est_quadrant_t *ghosts   = (p4est_quadrant_t*) pforest->ghost->ghosts.array;
41020a96aa3bSJed Brown     PetscInt         numGhosts = (PetscInt) pforest->ghost->ghosts.elem_count;
41030a96aa3bSJed Brown     PetscInt         count;
41040a96aa3bSJed Brown 
4105852b71a7SToby Isaac     for (count = 0; count < numGhosts - cLocalStart; count++, cp++) {
41060a96aa3bSJed Brown       p4est_quadrant_t *quad = &ghosts[count + cLocalStart];
41070a96aa3bSJed Brown       coarsePoint = quad->p.which_tree;
4108852b71a7SToby Isaac       PetscInt cell = count + cLocalEnd;
41090a96aa3bSJed Brown 
4110852b71a7SToby Isaac       PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad));
41110a96aa3bSJed Brown     }
41120a96aa3bSJed Brown   }
4113852b71a7SToby Isaac   PetscAssert(cp == cEnd - cStart,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected number of fine cells %" PetscInt_FMT " != %" PetscInt_FMT,cp,cEnd-cStart);
41140a96aa3bSJed Brown 
41159566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(newSection));
41166858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(plex, &cdm));
41176858538eSMatthew G. Knepley   PetscCall(DMClone(cdm, &cdmCell));
41186858538eSMatthew G. Knepley   PetscCall(DMSetCellCoordinateDM(plex, cdmCell));
41196858538eSMatthew G. Knepley   PetscCall(DMDestroy(&cdmCell));
41206858538eSMatthew G. Knepley   PetscCall(DMSetCellCoordinateSection(plex, cDim, newSection));
41219566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &v));
41229566063dSJacob Faibussowitsch   PetscCall(VecCreate(PETSC_COMM_SELF, &cVec));
41239566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) cVec, "coordinates"));
41249566063dSJacob Faibussowitsch   PetscCall(VecSetBlockSize(cVec, cDim));
41259566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(cVec, v, PETSC_DETERMINE));
41269566063dSJacob Faibussowitsch   PetscCall(VecSetType(cVec, VECSTANDARD));
41279566063dSJacob Faibussowitsch   PetscCall(VecSet(cVec, PETSC_MIN_REAL));
41280a96aa3bSJed Brown 
41290a96aa3bSJed Brown   /* Localize coordinates on cells if needed */
41306858538eSMatthew G. Knepley   PetscCall(VecGetArray(cVec, &coords2));
4131852b71a7SToby Isaac   cp = 0;
4132852b71a7SToby Isaac   if (cLocalStart > 0) {
4133852b71a7SToby Isaac     p4est_quadrant_t *ghosts = (p4est_quadrant_t*) pforest->ghost->ghosts.array;
4134852b71a7SToby Isaac     PetscInt         cell;
4135852b71a7SToby Isaac 
4136852b71a7SToby Isaac     for (cell = 0; cell < cLocalStart; ++cell, cp++) {
4137852b71a7SToby Isaac       p4est_quadrant_t *quad = &ghosts[cell];
4138852b71a7SToby Isaac 
4139852b71a7SToby Isaac       coarsePoint = quad->p.which_tree;
4140852b71a7SToby Isaac       PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2));
4141852b71a7SToby Isaac     }
4142852b71a7SToby Isaac   }
41430a96aa3bSJed Brown   for (t = flt; t <= llt; t++) {
41440a96aa3bSJed Brown     p4est_tree_t *tree    = &(trees[t]);
41450a96aa3bSJed Brown     PetscInt     offset   = cLocalStart + tree->quadrants_offset;
41460a96aa3bSJed Brown     PetscInt     numQuads = (PetscInt) tree->quadrants.elem_count;
4147852b71a7SToby Isaac     p4est_quadrant_t *quads = (p4est_quadrant_t *) tree->quadrants.array;
4148852b71a7SToby Isaac     PetscInt     i;
41490a96aa3bSJed Brown 
41500a96aa3bSJed Brown     if (!numQuads) continue;
4151852b71a7SToby Isaac     coarsePoint = t;
4152852b71a7SToby Isaac     for (i = 0; i < numQuads; i++, cp++) {
4153852b71a7SToby Isaac       PetscInt cell = i + offset;
41540a96aa3bSJed Brown       p4est_quadrant_t * quad = &quads[i];
41550a96aa3bSJed Brown 
4156852b71a7SToby Isaac       PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2));
4157852b71a7SToby Isaac     }
4158852b71a7SToby Isaac   }
4159852b71a7SToby Isaac   if (cLocalEnd - cLocalStart < cEnd - cStart) {
4160852b71a7SToby Isaac     p4est_quadrant_t *ghosts   = (p4est_quadrant_t*) pforest->ghost->ghosts.array;
4161852b71a7SToby Isaac     PetscInt         numGhosts = (PetscInt) pforest->ghost->ghosts.elem_count;
4162852b71a7SToby Isaac     PetscInt         count;
41630a96aa3bSJed Brown 
4164852b71a7SToby Isaac     for (count = 0; count < numGhosts - cLocalStart; count++, cp++) {
4165852b71a7SToby Isaac       p4est_quadrant_t *quad = &ghosts[count + cLocalStart];
4166852b71a7SToby Isaac       coarsePoint = quad->p.which_tree;
4167852b71a7SToby Isaac       PetscInt cell = count + cLocalEnd;
41680a96aa3bSJed Brown 
4169852b71a7SToby Isaac       PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2));
41700a96aa3bSJed Brown     }
41710a96aa3bSJed Brown   }
41729566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cVec, &coords2));
41736858538eSMatthew G. Knepley   PetscCall(DMSetCellCoordinatesLocal(plex, cVec));
41749566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cVec));
41759566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&newSection));
41760a96aa3bSJed Brown   PetscFunctionReturn(0);
41770a96aa3bSJed Brown }
41780a96aa3bSJed Brown 
41790a96aa3bSJed Brown #define DMForestClearAdaptivityForest_pforest _append_pforest(DMForestClearAdaptivityForest)
41800a96aa3bSJed Brown static PetscErrorCode DMForestClearAdaptivityForest_pforest(DM dm)
41810a96aa3bSJed Brown {
41820a96aa3bSJed Brown   DM_Forest         *forest;
41830a96aa3bSJed Brown   DM_Forest_pforest *pforest;
41840a96aa3bSJed Brown 
41850a96aa3bSJed Brown   PetscFunctionBegin;
41860a96aa3bSJed Brown   forest  = (DM_Forest*) dm->data;
41870a96aa3bSJed Brown   pforest = (DM_Forest_pforest *) forest->data;
41889566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(pforest->pointAdaptToSelfSF)));
41899566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(pforest->pointSelfToAdaptSF)));
41909566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->pointAdaptToSelfCids));
41919566063dSJacob Faibussowitsch   PetscCall(PetscFree(pforest->pointSelfToAdaptCids));
41920a96aa3bSJed Brown   PetscFunctionReturn(0);
41930a96aa3bSJed Brown }
41940a96aa3bSJed Brown 
41950a96aa3bSJed Brown static PetscErrorCode DMConvert_pforest_plex(DM dm, DMType newtype, DM *plex)
41960a96aa3bSJed Brown {
41970a96aa3bSJed Brown   DM_Forest            *forest;
41980a96aa3bSJed Brown   DM_Forest_pforest    *pforest;
41990a96aa3bSJed Brown   DM                   refTree, newPlex, base;
42000a96aa3bSJed Brown   PetscInt             adjDim, adjCodim, coordDim;
42010a96aa3bSJed Brown   MPI_Comm             comm;
42020a96aa3bSJed Brown   PetscBool            isPforest;
42030a96aa3bSJed Brown   PetscInt             dim;
42040a96aa3bSJed Brown   PetscInt             overlap;
42050a96aa3bSJed Brown   p4est_connect_type_t ctype;
42060a96aa3bSJed Brown   p4est_locidx_t       first_local_quad = -1;
42070a96aa3bSJed Brown   sc_array_t           *points_per_dim, *cone_sizes, *cones, *cone_orientations, *coords, *children, *parents, *childids, *leaves, *remotes;
42080a96aa3bSJed Brown   PetscSection         parentSection;
42090a96aa3bSJed Brown   PetscSF              pointSF;
42100a96aa3bSJed Brown   size_t               zz, count;
42110a96aa3bSJed Brown   PetscInt             pStart, pEnd;
42120a96aa3bSJed Brown   DMLabel              ghostLabelBase = NULL;
42130a96aa3bSJed Brown 
42140a96aa3bSJed Brown   PetscFunctionBegin;
42150a96aa3bSJed Brown 
42160a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
42170a96aa3bSJed Brown   comm = PetscObjectComm((PetscObject)dm);
42189566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm,DMPFOREST,&isPforest));
421928b400f6SJacob Faibussowitsch   PetscCheck(isPforest,comm,PETSC_ERR_ARG_WRONG,"Expected DM type %s, got %s",DMPFOREST,((PetscObject)dm)->type_name);
42209566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm,&dim));
422163a3b9bcSJacob Faibussowitsch   PetscCheck(dim == P4EST_DIM,comm,PETSC_ERR_ARG_WRONG,"Expected DM dimension %d, got %" PetscInt_FMT,P4EST_DIM,dim);
42220a96aa3bSJed Brown   forest  = (DM_Forest*) dm->data;
42230a96aa3bSJed Brown   pforest = (DM_Forest_pforest*) forest->data;
42249566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm,&base));
42250a96aa3bSJed Brown   if (base) {
42269566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(base,"ghost",&ghostLabelBase));
42270a96aa3bSJed Brown   }
42280a96aa3bSJed Brown   if (!pforest->plex) {
42290a96aa3bSJed Brown     PetscMPIInt size;
42300a96aa3bSJed Brown 
42319566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm,&size));
42329566063dSJacob Faibussowitsch     PetscCall(DMCreate(comm,&newPlex));
42339566063dSJacob Faibussowitsch     PetscCall(DMSetType(newPlex,DMPLEX));
42349566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(newPlex,dm->mattype));
42350a96aa3bSJed Brown     /* share labels */
42369566063dSJacob Faibussowitsch     PetscCall(DMCopyLabels(dm, newPlex, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL));
42379566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdjacencyDimension(dm,&adjDim));
42389566063dSJacob Faibussowitsch     PetscCall(DMForestGetAdjacencyCodimension(dm,&adjCodim));
42399566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(dm,&coordDim));
42400a96aa3bSJed Brown     if (adjDim == 0) {
42410a96aa3bSJed Brown       ctype = P4EST_CONNECT_FULL;
42420a96aa3bSJed Brown     } else if (adjCodim == 1) {
42430a96aa3bSJed Brown       ctype = P4EST_CONNECT_FACE;
42440a96aa3bSJed Brown #if defined(P4_TO_P8)
42450a96aa3bSJed Brown     } else if (adjDim == 1) {
42460a96aa3bSJed Brown       ctype = P8EST_CONNECT_EDGE;
42470a96aa3bSJed Brown #endif
42480a96aa3bSJed Brown     } else {
424963a3b9bcSJacob Faibussowitsch       SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONG,"Invalid adjacency dimension %" PetscInt_FMT,adjDim);
42500a96aa3bSJed Brown     }
425163a3b9bcSJacob Faibussowitsch     PetscCheck(ctype == P4EST_CONNECT_FULL,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONG,"Adjacency dimension %" PetscInt_FMT " / codimension %" PetscInt_FMT " not supported yet",adjDim,adjCodim);
42529566063dSJacob Faibussowitsch     PetscCall(DMForestGetPartitionOverlap(dm,&overlap));
425360667520SVaclav Hapla     PetscCall(DMPlexSetOverlap_Plex(newPlex,NULL,overlap));
42540a96aa3bSJed Brown 
42550a96aa3bSJed Brown     points_per_dim    = sc_array_new(sizeof(p4est_locidx_t));
42560a96aa3bSJed Brown     cone_sizes        = sc_array_new(sizeof(p4est_locidx_t));
42570a96aa3bSJed Brown     cones             = sc_array_new(sizeof(p4est_locidx_t));
42580a96aa3bSJed Brown     cone_orientations = sc_array_new(sizeof(p4est_locidx_t));
42590a96aa3bSJed Brown     coords            = sc_array_new(3 * sizeof(double));
42600a96aa3bSJed Brown     children          = sc_array_new(sizeof(p4est_locidx_t));
42610a96aa3bSJed Brown     parents           = sc_array_new(sizeof(p4est_locidx_t));
42620a96aa3bSJed Brown     childids          = sc_array_new(sizeof(p4est_locidx_t));
42630a96aa3bSJed Brown     leaves            = sc_array_new(sizeof(p4est_locidx_t));
42640a96aa3bSJed Brown     remotes           = sc_array_new(2 * sizeof(p4est_locidx_t));
42650a96aa3bSJed Brown 
4266792fecdfSBarry Smith     PetscCallP4est(p4est_get_plex_data_ext,(pforest->forest,&pforest->ghost,&pforest->lnodes,ctype,(int)((size > 1) ? overlap : 0),&first_local_quad,points_per_dim,cone_sizes,cones,cone_orientations,coords,children,parents,childids,leaves,remotes,1));
42670a96aa3bSJed Brown 
42680a96aa3bSJed Brown     pforest->cLocalStart = (PetscInt) first_local_quad;
42690a96aa3bSJed Brown     pforest->cLocalEnd   = pforest->cLocalStart + (PetscInt) pforest->forest->local_num_quadrants;
42709566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(points_per_dim));
42719566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cone_sizes));
42729566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cones));
42739566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(cone_orientations));
42749566063dSJacob Faibussowitsch     PetscCall(coords_double_to_PetscScalar(coords, coordDim));
42759566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(children));
42769566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(parents));
42779566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(childids));
42789566063dSJacob Faibussowitsch     PetscCall(locidx_to_PetscInt(leaves));
42799566063dSJacob Faibussowitsch     PetscCall(locidx_pair_to_PetscSFNode(remotes));
42800a96aa3bSJed Brown 
42819566063dSJacob Faibussowitsch     PetscCall(DMSetDimension(newPlex,P4EST_DIM));
42829566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinateDim(newPlex,coordDim));
42839566063dSJacob Faibussowitsch     PetscCall(DMPlexSetMaxProjectionHeight(newPlex,P4EST_DIM - 1));
42849566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateFromDAG(newPlex,P4EST_DIM,(PetscInt*)points_per_dim->array,(PetscInt*)cone_sizes->array,(PetscInt*)cones->array,(PetscInt*)cone_orientations->array,(PetscScalar*)coords->array));
42859566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertOldOrientations_Internal(newPlex));
42869566063dSJacob Faibussowitsch     PetscCall(DMCreateReferenceTree_pforest(comm,&refTree));
42879566063dSJacob Faibussowitsch     PetscCall(DMPlexSetReferenceTree(newPlex,refTree));
42889566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(comm,&parentSection));
42899566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(newPlex,&pStart,&pEnd));
42909566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(parentSection,pStart,pEnd));
42910a96aa3bSJed Brown     count = children->elem_count;
42920a96aa3bSJed Brown     for (zz = 0; zz < count; zz++) {
42930a96aa3bSJed Brown       PetscInt child = *((PetscInt*) sc_array_index(children,zz));
42940a96aa3bSJed Brown 
42959566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(parentSection,child,1));
42960a96aa3bSJed Brown     }
42979566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(parentSection));
42989566063dSJacob Faibussowitsch     PetscCall(DMPlexSetTree(newPlex,parentSection,(PetscInt*)parents->array,(PetscInt*)childids->array));
42999566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&parentSection));
43009566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm,&pointSF));
43010a96aa3bSJed Brown     /*
43020a96aa3bSJed Brown        These arrays defining the sf are from the p4est library, but the code there shows the leaves being populated in increasing order.
43030a96aa3bSJed Brown        https://gitlab.com/petsc/petsc/merge_requests/2248#note_240186391
43040a96aa3bSJed Brown     */
43059566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(pointSF,pEnd - pStart,(PetscInt)leaves->elem_count,(PetscInt*)leaves->array,PETSC_COPY_VALUES,(PetscSFNode*)remotes->array,PETSC_COPY_VALUES));
43069566063dSJacob Faibussowitsch     PetscCall(DMSetPointSF(newPlex,pointSF));
43079566063dSJacob Faibussowitsch     PetscCall(DMSetPointSF(dm,pointSF));
43080a96aa3bSJed Brown     {
43090a96aa3bSJed Brown       DM coordDM;
43100a96aa3bSJed Brown 
43119566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinateDM(newPlex,&coordDM));
43129566063dSJacob Faibussowitsch       PetscCall(DMSetPointSF(coordDM,pointSF));
43130a96aa3bSJed Brown     }
43149566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&pointSF));
43150a96aa3bSJed Brown     sc_array_destroy (points_per_dim);
43160a96aa3bSJed Brown     sc_array_destroy (cone_sizes);
43170a96aa3bSJed Brown     sc_array_destroy (cones);
43180a96aa3bSJed Brown     sc_array_destroy (cone_orientations);
43190a96aa3bSJed Brown     sc_array_destroy (coords);
43200a96aa3bSJed Brown     sc_array_destroy (children);
43210a96aa3bSJed Brown     sc_array_destroy (parents);
43220a96aa3bSJed Brown     sc_array_destroy (childids);
43230a96aa3bSJed Brown     sc_array_destroy (leaves);
43240a96aa3bSJed Brown     sc_array_destroy (remotes);
43250a96aa3bSJed Brown 
43260a96aa3bSJed Brown     {
43274fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
43280a96aa3bSJed Brown 
43294fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm,&maxCell,&Lstart,&L));
43304fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(newPlex,maxCell,Lstart,L));
43319566063dSJacob Faibussowitsch       PetscCall(DMPforestLocalizeCoordinates(dm,newPlex));
43320a96aa3bSJed Brown     }
43330a96aa3bSJed Brown 
43340a96aa3bSJed Brown     if (overlap > 0) { /* the p4est routine can't set all of the coordinates in its routine if there is overlap */
43350a96aa3bSJed Brown       Vec               coordsGlobal, coordsLocal;
43360a96aa3bSJed Brown       const PetscScalar *globalArray;
43370a96aa3bSJed Brown       PetscScalar       *localArray;
43380a96aa3bSJed Brown       PetscSF           coordSF;
43390a96aa3bSJed Brown       DM                coordDM;
43400a96aa3bSJed Brown 
43419566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinateDM(newPlex,&coordDM));
43429566063dSJacob Faibussowitsch       PetscCall(DMGetSectionSF(coordDM,&coordSF));
43439566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinates(newPlex, &coordsGlobal));
43449566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinatesLocal(newPlex, &coordsLocal));
43459566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(coordsGlobal, &globalArray));
43469566063dSJacob Faibussowitsch       PetscCall(VecGetArray(coordsLocal, &localArray));
43479566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(coordSF,MPIU_SCALAR,globalArray,localArray,MPI_REPLACE));
43489566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(coordSF,MPIU_SCALAR,globalArray,localArray,MPI_REPLACE));
43499566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(coordsLocal, &localArray));
43509566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(coordsGlobal, &globalArray));
43519566063dSJacob Faibussowitsch       PetscCall(DMSetCoordinatesLocal(newPlex, coordsLocal));
43520a96aa3bSJed Brown     }
43539566063dSJacob Faibussowitsch     PetscCall(DMPforestMapCoordinates(dm,newPlex));
43540a96aa3bSJed Brown 
43550a96aa3bSJed Brown     pforest->plex = newPlex;
43560a96aa3bSJed Brown 
43570a96aa3bSJed Brown     /* copy labels */
43589566063dSJacob Faibussowitsch     PetscCall(DMPforestLabelsFinalize(dm,newPlex));
43590a96aa3bSJed Brown 
43600a96aa3bSJed Brown     if (ghostLabelBase || pforest->ghostName) { /* we have to do this after copying labels because the labels drive the construction of ghost cells */
43610a96aa3bSJed Brown       PetscInt numAdded;
43620a96aa3bSJed Brown       DM       newPlexGhosted;
43630a96aa3bSJed Brown       void     *ctx;
43640a96aa3bSJed Brown 
43659566063dSJacob Faibussowitsch       PetscCall(DMPlexConstructGhostCells(newPlex,pforest->ghostName,&numAdded,&newPlexGhosted));
43669566063dSJacob Faibussowitsch       PetscCall(DMGetApplicationContext(newPlex,&ctx));
43679566063dSJacob Faibussowitsch       PetscCall(DMSetApplicationContext(newPlexGhosted,ctx));
43680a96aa3bSJed Brown       /* we want the sf for the ghost dm to be the one for the p4est dm as well */
43699566063dSJacob Faibussowitsch       PetscCall(DMGetPointSF(newPlexGhosted,&pointSF));
43709566063dSJacob Faibussowitsch       PetscCall(DMSetPointSF(dm,pointSF));
43719566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&newPlex));
43729566063dSJacob Faibussowitsch       PetscCall(DMPlexSetReferenceTree(newPlexGhosted,refTree));
43739566063dSJacob Faibussowitsch       PetscCall(DMForestClearAdaptivityForest_pforest(dm));
43740a96aa3bSJed Brown       newPlex = newPlexGhosted;
43750a96aa3bSJed Brown 
43760a96aa3bSJed Brown       /* share the labels back */
43779566063dSJacob Faibussowitsch       PetscCall(DMDestroyLabelLinkList_Internal(dm));
43789566063dSJacob Faibussowitsch       PetscCall(DMCopyLabels(newPlex, dm, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL));
43790a96aa3bSJed Brown       pforest->plex = newPlex;
43800a96aa3bSJed Brown     }
43819566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&refTree));
43820a96aa3bSJed Brown     if (dm->setfromoptionscalled) {
43835f80ce2aSJacob Faibussowitsch 
4384d0609cedSBarry Smith       PetscObjectOptionsBegin((PetscObject)newPlex);
43859566063dSJacob Faibussowitsch       PetscCall(DMSetFromOptions_NonRefinement_Plex(PetscOptionsObject,newPlex));
43869566063dSJacob Faibussowitsch       PetscCall(PetscObjectProcessOptionsHandlers(PetscOptionsObject,(PetscObject)newPlex));
4387d0609cedSBarry Smith       PetscOptionsEnd();
43880a96aa3bSJed Brown     }
43899566063dSJacob Faibussowitsch     PetscCall(DMViewFromOptions(newPlex,NULL,"-dm_p4est_plex_view"));
43900a96aa3bSJed Brown     {
43916858538eSMatthew G. Knepley       DM           cdm;
43920a96aa3bSJed Brown       PetscSection coordsSec;
43930a96aa3bSJed Brown       Vec          coords;
43940a96aa3bSJed Brown       PetscInt     cDim;
43950a96aa3bSJed Brown 
43969566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinateDim(newPlex, &cDim));
43979566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinateSection(newPlex, &coordsSec));
43989566063dSJacob Faibussowitsch       PetscCall(DMSetCoordinateSection(dm,cDim, coordsSec));
43999566063dSJacob Faibussowitsch       PetscCall(DMGetCoordinatesLocal(newPlex, &coords));
44009566063dSJacob Faibussowitsch       PetscCall(DMSetCoordinatesLocal(dm, coords));
44016858538eSMatthew G. Knepley       PetscCall(DMGetCellCoordinateDM(newPlex, &cdm));
44026858538eSMatthew G. Knepley       if (cdm) PetscCall(DMSetCellCoordinateDM(dm, cdm));
44036858538eSMatthew G. Knepley       PetscCall(DMGetCellCoordinateSection(newPlex, &coordsSec));
44046858538eSMatthew G. Knepley       if (coordsSec) PetscCall(DMSetCellCoordinateSection(dm, cDim, coordsSec));
44056858538eSMatthew G. Knepley       PetscCall(DMGetCellCoordinatesLocal(newPlex, &coords));
44066858538eSMatthew G. Knepley       if (coords) PetscCall(DMSetCellCoordinatesLocal(dm, coords));
44070a96aa3bSJed Brown     }
44080a96aa3bSJed Brown   }
44090a96aa3bSJed Brown   newPlex = pforest->plex;
44100a96aa3bSJed Brown   if (plex) {
44119566063dSJacob Faibussowitsch     PetscCall(DMClone(newPlex,plex));
44126858538eSMatthew G. Knepley #if 0
44139566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDM(newPlex,&coordDM));
44149566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinateDM(*plex,coordDM));
44156858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinateDM(newPlex,&coordDM));
44166858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinateDM(*plex,coordDM));
44176858538eSMatthew G. Knepley #endif
44189566063dSJacob Faibussowitsch     PetscCall(DMShareDiscretization(dm,*plex));
44190a96aa3bSJed Brown   }
44200a96aa3bSJed Brown   PetscFunctionReturn(0);
44210a96aa3bSJed Brown }
44220a96aa3bSJed Brown 
44230a96aa3bSJed Brown static PetscErrorCode DMSetFromOptions_pforest(PetscOptionItems *PetscOptionsObject,DM dm)
44240a96aa3bSJed Brown {
44250a96aa3bSJed Brown   DM_Forest_pforest *pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data;
44260a96aa3bSJed Brown   char              stringBuffer[256];
44270a96aa3bSJed Brown   PetscBool         flg;
44280a96aa3bSJed Brown 
44290a96aa3bSJed Brown   PetscFunctionBegin;
44309566063dSJacob Faibussowitsch   PetscCall(DMSetFromOptions_Forest(PetscOptionsObject,dm));
4431d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject,"DM" P4EST_STRING " options");
44329566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-dm_p4est_partition_for_coarsening","partition forest to allow for coarsening","DMP4estSetPartitionForCoarsening",pforest->partition_for_coarsening,&(pforest->partition_for_coarsening),NULL));
44339566063dSJacob Faibussowitsch   PetscCall(PetscOptionsString("-dm_p4est_ghost_label_name","the name of the ghost label when converting from a DMPlex",NULL,NULL,stringBuffer,sizeof(stringBuffer),&flg));
4434d0609cedSBarry Smith   PetscOptionsHeadEnd();
44350a96aa3bSJed Brown   if (flg) {
44369566063dSJacob Faibussowitsch     PetscCall(PetscFree(pforest->ghostName));
44379566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(stringBuffer,&pforest->ghostName));
44380a96aa3bSJed Brown   }
44390a96aa3bSJed Brown   PetscFunctionReturn(0);
44400a96aa3bSJed Brown }
44410a96aa3bSJed Brown 
44420a96aa3bSJed Brown #if !defined(P4_TO_P8)
44430a96aa3bSJed Brown #define DMPforestGetPartitionForCoarsening DMP4estGetPartitionForCoarsening
44440a96aa3bSJed Brown #define DMPforestSetPartitionForCoarsening DMP4estSetPartitionForCoarsening
44450a96aa3bSJed Brown #else
44460a96aa3bSJed Brown #define DMPforestGetPartitionForCoarsening DMP8estGetPartitionForCoarsening
44470a96aa3bSJed Brown #define DMPforestSetPartitionForCoarsening DMP8estSetPartitionForCoarsening
44480a96aa3bSJed Brown #endif
44490a96aa3bSJed Brown 
44500a96aa3bSJed Brown PETSC_EXTERN PetscErrorCode DMPforestGetPartitionForCoarsening(DM dm, PetscBool *flg)
44510a96aa3bSJed Brown {
44520a96aa3bSJed Brown   DM_Forest_pforest *pforest;
44530a96aa3bSJed Brown 
44540a96aa3bSJed Brown   PetscFunctionBegin;
44550a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
44560a96aa3bSJed Brown   pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data;
44570a96aa3bSJed Brown   *flg    = pforest->partition_for_coarsening;
44580a96aa3bSJed Brown   PetscFunctionReturn(0);
44590a96aa3bSJed Brown }
44600a96aa3bSJed Brown 
44610a96aa3bSJed Brown PETSC_EXTERN PetscErrorCode DMPforestSetPartitionForCoarsening(DM dm, PetscBool flg)
44620a96aa3bSJed Brown {
44630a96aa3bSJed Brown   DM_Forest_pforest *pforest;
44640a96aa3bSJed Brown 
44650a96aa3bSJed Brown   PetscFunctionBegin;
44660a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
44670a96aa3bSJed Brown   pforest                           = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data;
44680a96aa3bSJed Brown   pforest->partition_for_coarsening = flg;
44690a96aa3bSJed Brown   PetscFunctionReturn(0);
44700a96aa3bSJed Brown }
44710a96aa3bSJed Brown 
44720a96aa3bSJed Brown static PetscErrorCode DMPforestGetPlex(DM dm,DM *plex)
44730a96aa3bSJed Brown {
44740a96aa3bSJed Brown   DM_Forest_pforest *pforest;
44750a96aa3bSJed Brown 
44760a96aa3bSJed Brown   PetscFunctionBegin;
44770a96aa3bSJed Brown   if (plex) *plex = NULL;
44789566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
44790a96aa3bSJed Brown   pforest = (DM_Forest_pforest*) ((DM_Forest*) dm->data)->data;
44800a96aa3bSJed Brown   if (!pforest->plex) {
44819566063dSJacob Faibussowitsch     PetscCall(DMConvert_pforest_plex(dm,DMPLEX,NULL));
44820a96aa3bSJed Brown   }
44839566063dSJacob Faibussowitsch   PetscCall(DMShareDiscretization(dm,pforest->plex));
44840a96aa3bSJed Brown   if (plex) *plex = pforest->plex;
44850a96aa3bSJed Brown   PetscFunctionReturn(0);
44860a96aa3bSJed Brown }
44870a96aa3bSJed Brown 
44880a96aa3bSJed Brown #define DMCreateInterpolation_pforest _append_pforest(DMCreateInterpolation)
44890a96aa3bSJed Brown static PetscErrorCode DMCreateInterpolation_pforest(DM dmCoarse, DM dmFine, Mat *interpolation, Vec *scaling)
44900a96aa3bSJed Brown {
44910a96aa3bSJed Brown   PetscSection   gsc, gsf;
44920a96aa3bSJed Brown   PetscInt       m, n;
44930a96aa3bSJed Brown   DM             cdm;
44940a96aa3bSJed Brown 
44950a96aa3bSJed Brown   PetscFunctionBegin;
44969566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmFine, &gsf));
44979566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &m));
44989566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmCoarse, &gsc));
44999566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &n));
45000a96aa3bSJed Brown 
45019566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject) dmFine), interpolation));
45029566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*interpolation, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
45039566063dSJacob Faibussowitsch   PetscCall(MatSetType(*interpolation, MATAIJ));
45040a96aa3bSJed Brown 
45059566063dSJacob Faibussowitsch   PetscCall(DMGetCoarseDM(dmFine, &cdm));
450608401ef6SPierre Jolivet   PetscCheck(cdm == dmCoarse,PetscObjectComm((PetscObject)dmFine),PETSC_ERR_SUP,"Only interpolation from coarse DM for now");
45070a96aa3bSJed Brown 
45080a96aa3bSJed Brown   {
45090a96aa3bSJed Brown     DM       plexF, plexC;
45100a96aa3bSJed Brown     PetscSF  sf;
45110a96aa3bSJed Brown     PetscInt *cids;
45120a96aa3bSJed Brown     PetscInt dofPerDim[4] = {1,1,1,1};
45130a96aa3bSJed Brown 
45149566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dmCoarse,&plexC));
45159566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dmFine,&plexF));
45169566063dSJacob Faibussowitsch     PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids));
45179566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(sf));
45189566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeInterpolatorTree(plexC, plexF, sf, cids, *interpolation));
45199566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
45209566063dSJacob Faibussowitsch     PetscCall(PetscFree(cids));
45210a96aa3bSJed Brown   }
45229566063dSJacob Faibussowitsch   PetscCall(MatViewFromOptions(*interpolation, NULL, "-interp_mat_view"));
45230a96aa3bSJed Brown   /* Use naive scaling */
45249566063dSJacob Faibussowitsch   PetscCall(DMCreateInterpolationScale(dmCoarse, dmFine, *interpolation, scaling));
45250a96aa3bSJed Brown   PetscFunctionReturn(0);
45260a96aa3bSJed Brown }
45270a96aa3bSJed Brown 
45280a96aa3bSJed Brown #define DMCreateInjection_pforest _append_pforest(DMCreateInjection)
45290a96aa3bSJed Brown static PetscErrorCode DMCreateInjection_pforest(DM dmCoarse, DM dmFine, Mat *injection)
45300a96aa3bSJed Brown {
45310a96aa3bSJed Brown   PetscSection   gsc, gsf;
45320a96aa3bSJed Brown   PetscInt       m, n;
45330a96aa3bSJed Brown   DM             cdm;
45340a96aa3bSJed Brown 
45350a96aa3bSJed Brown   PetscFunctionBegin;
45369566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmFine, &gsf));
45379566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &n));
45389566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmCoarse, &gsc));
45399566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &m));
45400a96aa3bSJed Brown 
45419566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject) dmFine), injection));
45429566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*injection, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
45439566063dSJacob Faibussowitsch   PetscCall(MatSetType(*injection, MATAIJ));
45440a96aa3bSJed Brown 
45459566063dSJacob Faibussowitsch   PetscCall(DMGetCoarseDM(dmFine, &cdm));
454608401ef6SPierre Jolivet   PetscCheck(cdm == dmCoarse,PetscObjectComm((PetscObject)dmFine),PETSC_ERR_SUP,"Only injection to coarse DM for now");
45470a96aa3bSJed Brown 
45480a96aa3bSJed Brown   {
45490a96aa3bSJed Brown     DM       plexF, plexC;
45500a96aa3bSJed Brown     PetscSF  sf;
45510a96aa3bSJed Brown     PetscInt *cids;
45520a96aa3bSJed Brown     PetscInt dofPerDim[4] = {1,1,1,1};
45530a96aa3bSJed Brown 
45549566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dmCoarse,&plexC));
45559566063dSJacob Faibussowitsch     PetscCall(DMPforestGetPlex(dmFine,&plexF));
45569566063dSJacob Faibussowitsch     PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids));
45579566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(sf));
45589566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeInjectorTree(plexC, plexF, sf, cids, *injection));
45599566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
45609566063dSJacob Faibussowitsch     PetscCall(PetscFree(cids));
45610a96aa3bSJed Brown   }
45629566063dSJacob Faibussowitsch   PetscCall(MatViewFromOptions(*injection, NULL, "-inject_mat_view"));
45630a96aa3bSJed Brown   /* Use naive scaling */
45640a96aa3bSJed Brown   PetscFunctionReturn(0);
45650a96aa3bSJed Brown }
45660a96aa3bSJed Brown 
45670a96aa3bSJed Brown #define DMForestTransferVecFromBase_pforest _append_pforest(DMForestTransferVecFromBase)
45680a96aa3bSJed Brown static PetscErrorCode DMForestTransferVecFromBase_pforest(DM dm, Vec vecIn, Vec vecOut)
45690a96aa3bSJed Brown {
45700a96aa3bSJed Brown   DM             dmIn, dmVecIn, base, basec, plex, coarseDM;
45710a96aa3bSJed Brown   DM             *hierarchy;
45720a96aa3bSJed Brown   PetscSF        sfRed = NULL;
45730a96aa3bSJed Brown   PetscDS        ds;
45740a96aa3bSJed Brown   Vec            vecInLocal, vecOutLocal;
45750a96aa3bSJed Brown   DMLabel        subpointMap;
45760a96aa3bSJed Brown   PetscInt       minLevel, mh, n_hi, i;
45770a96aa3bSJed Brown   PetscBool      hiforest, *hierarchy_forest;
45780a96aa3bSJed Brown 
45790a96aa3bSJed Brown   PetscFunctionBegin;
45809566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vecIn,&dmVecIn));
45819566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmVecIn,&ds));
458228b400f6SJacob Faibussowitsch   PetscCheck(ds,PetscObjectComm((PetscObject)dmVecIn),PETSC_ERR_SUP,"Cannot transfer without a PetscDS object");
45830a96aa3bSJed Brown   { /* we cannot stick user contexts into function callbacks for DMProjectFieldLocal! */
45840a96aa3bSJed Brown     PetscSection section;
45850a96aa3bSJed Brown     PetscInt     Nf;
45860a96aa3bSJed Brown 
45879566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmVecIn,&section));
45889566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section,&Nf));
458963a3b9bcSJacob Faibussowitsch     PetscCheck(Nf <= 3,PetscObjectComm((PetscObject)dmVecIn),PETSC_ERR_SUP,"Number of fields %" PetscInt_FMT " are currently not supported! Send an email at petsc-dev@mcs.anl.gov",Nf);
45900a96aa3bSJed Brown   }
45919566063dSJacob Faibussowitsch   PetscCall(DMForestGetMinimumRefinement(dm,&minLevel));
459263a3b9bcSJacob Faibussowitsch   PetscCheck(!minLevel,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Cannot transfer with minimum refinement set to %" PetscInt_FMT ". Rerun with DMForestSetMinimumRefinement(dm,0)",minLevel);
45939566063dSJacob Faibussowitsch   PetscCall(DMForestGetBaseDM(dm,&base));
459428b400f6SJacob Faibussowitsch   PetscCheck(base,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Missing base DM");
45950a96aa3bSJed Brown 
45969566063dSJacob Faibussowitsch   PetscCall(VecSet(vecOut,0.0));
45970a96aa3bSJed Brown   if (dmVecIn == base) { /* sequential runs */
45989566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)vecIn));
45990a96aa3bSJed Brown   } else {
46000a96aa3bSJed Brown     PetscSection secIn, secInRed;
46010a96aa3bSJed Brown     Vec          vecInRed, vecInLocal;
46020a96aa3bSJed Brown 
46039566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)base,"_base_migration_sf",(PetscObject*)&sfRed));
460428b400f6SJacob Faibussowitsch     PetscCheck(sfRed,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not the DM set with DMForestSetBaseDM()");
46059566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmVecIn),&secInRed));
46069566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF,&vecInRed));
46079566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmVecIn,&secIn));
46089566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmVecIn,&vecInLocal));
46099566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmVecIn,vecIn,INSERT_VALUES,vecInLocal));
46109566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmVecIn,vecIn,INSERT_VALUES,vecInLocal));
46119566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeField(dmVecIn,sfRed,secIn,vecInLocal,secInRed,vecInRed));
46129566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmVecIn,&vecInLocal));
46139566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&secInRed));
46140a96aa3bSJed Brown     vecIn = vecInRed;
46150a96aa3bSJed Brown   }
46160a96aa3bSJed Brown 
46170a96aa3bSJed Brown   /* we first search through the AdaptivityForest hierarchy
46180a96aa3bSJed Brown      once we found the first disconnected forest, we upsweep the DM hierarchy */
46190a96aa3bSJed Brown   hiforest = PETSC_TRUE;
46200a96aa3bSJed Brown 
46210a96aa3bSJed Brown   /* upsweep to the coarsest DM */
46220a96aa3bSJed Brown   n_hi = 0;
46230a96aa3bSJed Brown   coarseDM = dm;
46240a96aa3bSJed Brown   do {
46250a96aa3bSJed Brown     PetscBool isforest;
46260a96aa3bSJed Brown 
46270a96aa3bSJed Brown     dmIn = coarseDM;
46280a96aa3bSJed Brown     /* need to call DMSetUp to have the hierarchy recursively setup */
46299566063dSJacob Faibussowitsch     PetscCall(DMSetUp(dmIn));
46309566063dSJacob Faibussowitsch     PetscCall(DMIsForest(dmIn,&isforest));
463128b400f6SJacob Faibussowitsch     PetscCheck(isforest,PetscObjectComm((PetscObject)dmIn),PETSC_ERR_SUP,"Cannot currently transfer through a mixed hierarchy! Found DM type %s",((PetscObject)dmIn)->type_name);
46320a96aa3bSJed Brown     coarseDM = NULL;
46330a96aa3bSJed Brown     if (hiforest) {
46349566063dSJacob Faibussowitsch       PetscCall(DMForestGetAdaptivityForest(dmIn,&coarseDM));
46350a96aa3bSJed Brown     }
46360a96aa3bSJed Brown     if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */
46370a96aa3bSJed Brown       hiforest = PETSC_FALSE;
46389566063dSJacob Faibussowitsch       PetscCall(DMGetCoarseDM(dmIn,&coarseDM));
46390a96aa3bSJed Brown     }
46400a96aa3bSJed Brown     n_hi++;
46410a96aa3bSJed Brown   } while (coarseDM);
46420a96aa3bSJed Brown 
46439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(n_hi,&hierarchy,n_hi,&hierarchy_forest));
46440a96aa3bSJed Brown 
46450a96aa3bSJed Brown   i = 0;
46460a96aa3bSJed Brown   hiforest = PETSC_TRUE;
46470a96aa3bSJed Brown   coarseDM = dm;
46480a96aa3bSJed Brown   do {
46490a96aa3bSJed Brown     dmIn = coarseDM;
46500a96aa3bSJed Brown     coarseDM = NULL;
46510a96aa3bSJed Brown     if (hiforest) {
46529566063dSJacob Faibussowitsch       PetscCall(DMForestGetAdaptivityForest(dmIn,&coarseDM));
46530a96aa3bSJed Brown     }
46540a96aa3bSJed Brown     if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */
46550a96aa3bSJed Brown       hiforest = PETSC_FALSE;
46569566063dSJacob Faibussowitsch       PetscCall(DMGetCoarseDM(dmIn,&coarseDM));
46570a96aa3bSJed Brown     }
46580a96aa3bSJed Brown     i++;
46590a96aa3bSJed Brown     hierarchy[n_hi - i] = dmIn;
46600a96aa3bSJed Brown   } while (coarseDM);
46610a96aa3bSJed Brown 
46620a96aa3bSJed Brown   /* project base vector on the coarsest forest (minimum refinement = 0) */
46639566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dmIn,&plex));
46640a96aa3bSJed Brown 
46650a96aa3bSJed Brown   /* Check this plex is compatible with the base */
46660a96aa3bSJed Brown   {
46670a96aa3bSJed Brown     IS       gnum[2];
46680a96aa3bSJed Brown     PetscInt ncells[2],gncells[2];
46690a96aa3bSJed Brown 
46709566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellNumbering(base,&gnum[0]));
46719566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellNumbering(plex,&gnum[1]));
46729566063dSJacob Faibussowitsch     PetscCall(ISGetMinMax(gnum[0],NULL,&ncells[0]));
46739566063dSJacob Faibussowitsch     PetscCall(ISGetMinMax(gnum[1],NULL,&ncells[1]));
46741c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(ncells,gncells,2,MPIU_INT,MPI_MAX,PetscObjectComm((PetscObject)dm)));
467563a3b9bcSJacob Faibussowitsch     PetscCheck(gncells[0] == gncells[1],PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Invalid number of base cells! Expected %" PetscInt_FMT ", found %" PetscInt_FMT,gncells[0]+1,gncells[1]+1);
46760a96aa3bSJed Brown   }
46770a96aa3bSJed Brown 
46789566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dmIn,"_forest_base_subpoint_map",&subpointMap));
467928b400f6SJacob Faibussowitsch   PetscCheck(subpointMap,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing _forest_base_subpoint_map label");
46800a96aa3bSJed Brown 
46819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxProjectionHeight(base,&mh));
46829566063dSJacob Faibussowitsch   PetscCall(DMPlexSetMaxProjectionHeight(plex,mh));
46830a96aa3bSJed Brown 
46849566063dSJacob Faibussowitsch   PetscCall(DMClone(base,&basec));
46859566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dmVecIn,basec));
46860a96aa3bSJed Brown   if (sfRed) {
46879566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)vecIn));
46880a96aa3bSJed Brown     vecInLocal = vecIn;
46890a96aa3bSJed Brown   } else {
46909566063dSJacob Faibussowitsch     PetscCall(DMCreateLocalVector(basec,&vecInLocal));
46919566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(basec,vecIn,INSERT_VALUES,vecInLocal));
46929566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(basec,vecIn,INSERT_VALUES,vecInLocal));
46930a96aa3bSJed Brown   }
46940a96aa3bSJed Brown 
46959566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dmIn,&vecOutLocal));
46960a96aa3bSJed Brown   { /* get degrees of freedom ordered onto dmIn */
46970a96aa3bSJed Brown     PetscSF            basetocoarse;
46980a96aa3bSJed Brown     PetscInt           bStart, bEnd, nroots;
46990a96aa3bSJed Brown     PetscInt           iStart, iEnd, nleaves, leaf;
47000a96aa3bSJed Brown     PetscMPIInt        rank;
47010a96aa3bSJed Brown     PetscSFNode       *remotes;
47020a96aa3bSJed Brown     PetscSection       secIn, secOut;
47030a96aa3bSJed Brown     PetscInt          *remoteOffsets;
47040a96aa3bSJed Brown     PetscSF            transferSF;
47050a96aa3bSJed Brown     const PetscScalar *inArray;
47060a96aa3bSJed Brown     PetscScalar       *outArray;
47070a96aa3bSJed Brown 
47089566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)basec), &rank));
47099566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(basec, &bStart, &bEnd));
47100a96aa3bSJed Brown     nroots = PetscMax(bEnd - bStart, 0);
47119566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(plex, &iStart, &iEnd));
47120a96aa3bSJed Brown     nleaves = PetscMax(iEnd - iStart, 0);
47130a96aa3bSJed Brown 
47149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &remotes));
47150a96aa3bSJed Brown     for (leaf = iStart; leaf < iEnd; leaf++) {
47160a96aa3bSJed Brown       PetscInt index;
47170a96aa3bSJed Brown 
47180a96aa3bSJed Brown       remotes[leaf - iStart].rank = rank;
47199566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(subpointMap, leaf, &index));
47200a96aa3bSJed Brown       remotes[leaf - iStart].index = index;
47210a96aa3bSJed Brown     }
47220a96aa3bSJed Brown 
47239566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)basec), &basetocoarse));
47249566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(basetocoarse, nroots, nleaves, NULL, PETSC_OWN_POINTER, remotes, PETSC_OWN_POINTER));
47259566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(basetocoarse));
47269566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(basec,&secIn));
47279566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmIn),&secOut));
47289566063dSJacob Faibussowitsch     PetscCall(PetscSFDistributeSection(basetocoarse, secIn, &remoteOffsets, secOut));
47299566063dSJacob Faibussowitsch     PetscCall(PetscSFCreateSectionSF(basetocoarse, secIn, remoteOffsets, secOut, &transferSF));
47309566063dSJacob Faibussowitsch     PetscCall(PetscFree(remoteOffsets));
47319566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(vecOutLocal, &outArray));
47329566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(vecInLocal, &inArray));
47339566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(transferSF, MPIU_SCALAR, inArray, outArray,MPI_REPLACE));
47349566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(transferSF, MPIU_SCALAR, inArray, outArray,MPI_REPLACE));
47359566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(vecInLocal, &inArray));
47369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(vecOutLocal, &outArray));
47379566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&transferSF));
47389566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&secOut));
47399566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&basetocoarse));
47400a96aa3bSJed Brown   }
47419566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vecInLocal));
47429566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&basec));
47439566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vecIn));
47440a96aa3bSJed Brown 
47450a96aa3bSJed Brown   /* output */
47460a96aa3bSJed Brown   if (n_hi > 1) { /* downsweep the stored hierarchy */
47470a96aa3bSJed Brown     Vec vecOut1, vecOut2;
47480a96aa3bSJed Brown     DM  fineDM;
47490a96aa3bSJed Brown 
47509566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmIn,&vecOut1));
47519566063dSJacob Faibussowitsch     PetscCall(DMLocalToGlobal(dmIn,vecOutLocal,INSERT_VALUES,vecOut1));
47529566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmIn,&vecOutLocal));
47530a96aa3bSJed Brown     for (i = 1; i < n_hi-1; i++) {
47540a96aa3bSJed Brown       fineDM  = hierarchy[i];
47559566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalVector(fineDM,&vecOut2));
47569566063dSJacob Faibussowitsch       PetscCall(DMForestTransferVec(dmIn,vecOut1,fineDM,vecOut2,PETSC_TRUE,0.0));
47579566063dSJacob Faibussowitsch       PetscCall(DMRestoreGlobalVector(dmIn,&vecOut1));
47580a96aa3bSJed Brown       vecOut1 = vecOut2;
47590a96aa3bSJed Brown       dmIn    = fineDM;
47600a96aa3bSJed Brown     }
47619566063dSJacob Faibussowitsch     PetscCall(DMForestTransferVec(dmIn,vecOut1,dm,vecOut,PETSC_TRUE,0.0));
47629566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmIn,&vecOut1));
47630a96aa3bSJed Brown   } else {
47649566063dSJacob Faibussowitsch     PetscCall(DMLocalToGlobal(dmIn,vecOutLocal,INSERT_VALUES,vecOut));
47659566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmIn,&vecOutLocal));
47660a96aa3bSJed Brown   }
47679566063dSJacob Faibussowitsch   PetscCall(PetscFree2(hierarchy,hierarchy_forest));
47680a96aa3bSJed Brown   PetscFunctionReturn(0);
47690a96aa3bSJed Brown }
47700a96aa3bSJed Brown 
47710a96aa3bSJed Brown #define DMForestTransferVec_pforest _append_pforest(DMForestTransferVec)
47720a96aa3bSJed Brown static PetscErrorCode DMForestTransferVec_pforest(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut, PetscBool useBCs, PetscReal time)
47730a96aa3bSJed Brown {
47740a96aa3bSJed Brown   DM             adaptIn, adaptOut, plexIn, plexOut;
47750a96aa3bSJed Brown   DM_Forest      *forestIn, *forestOut, *forestAdaptIn, *forestAdaptOut;
47760a96aa3bSJed Brown   PetscInt       dofPerDim[] = {1, 1, 1, 1};
47770a96aa3bSJed Brown   PetscSF        inSF = NULL, outSF = NULL;
47780a96aa3bSJed Brown   PetscInt       *inCids = NULL, *outCids = NULL;
47790a96aa3bSJed Brown   DMAdaptFlag    purposeIn, purposeOut;
47800a96aa3bSJed Brown 
47810a96aa3bSJed Brown   PetscFunctionBegin;
47820a96aa3bSJed Brown   forestOut = (DM_Forest *) dmOut->data;
47830a96aa3bSJed Brown   forestIn  = (DM_Forest *) dmIn->data;
47840a96aa3bSJed Brown 
47859566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dmOut,&adaptOut));
47869566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityPurpose(dmOut,&purposeOut));
47870a96aa3bSJed Brown   forestAdaptOut = adaptOut ? (DM_Forest *) adaptOut->data : NULL;
47880a96aa3bSJed Brown 
47899566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityForest(dmIn,&adaptIn));
47909566063dSJacob Faibussowitsch   PetscCall(DMForestGetAdaptivityPurpose(dmIn,&purposeIn));
47910a96aa3bSJed Brown   forestAdaptIn  = adaptIn ? (DM_Forest *) adaptIn->data : NULL;
47920a96aa3bSJed Brown 
47930a96aa3bSJed Brown   if (forestAdaptOut == forestIn) {
47940a96aa3bSJed Brown     switch (purposeOut) {
47950a96aa3bSJed Brown     case DM_ADAPT_REFINE:
47969566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmIn,dmOut,dofPerDim,&inSF,PETSC_TRUE,&inCids));
47979566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(inSF));
47980a96aa3bSJed Brown       break;
47990a96aa3bSJed Brown     case DM_ADAPT_COARSEN:
48000a96aa3bSJed Brown     case DM_ADAPT_COARSEN_LAST:
48019566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmOut,dmIn,dofPerDim,&outSF,PETSC_TRUE,&outCids));
48029566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(outSF));
48030a96aa3bSJed Brown       break;
48040a96aa3bSJed Brown     default:
48059566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmIn,dmOut,dofPerDim,&inSF,PETSC_TRUE,&inCids));
48069566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmOut,dmIn,dofPerDim,&outSF,PETSC_FALSE,&outCids));
48079566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(inSF));
48089566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(outSF));
48090a96aa3bSJed Brown     }
48100a96aa3bSJed Brown   } else if (forestAdaptIn == forestOut) {
48110a96aa3bSJed Brown     switch (purposeIn) {
48120a96aa3bSJed Brown     case DM_ADAPT_REFINE:
48139566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmOut,dmIn,dofPerDim,&outSF,PETSC_TRUE,&inCids));
48149566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(outSF));
48150a96aa3bSJed Brown       break;
48160a96aa3bSJed Brown     case DM_ADAPT_COARSEN:
48170a96aa3bSJed Brown     case DM_ADAPT_COARSEN_LAST:
48189566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmIn,dmOut,dofPerDim,&inSF,PETSC_TRUE,&inCids));
48199566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(inSF));
48200a96aa3bSJed Brown       break;
48210a96aa3bSJed Brown     default:
48229566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmIn,dmOut,dofPerDim,&inSF,PETSC_TRUE,&inCids));
48239566063dSJacob Faibussowitsch       PetscCall(DMPforestGetTransferSF_Internal(dmOut,dmIn,dofPerDim,&outSF,PETSC_FALSE,&outCids));
48249566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(inSF));
48259566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(outSF));
48260a96aa3bSJed Brown     }
48270a96aa3bSJed Brown   } else SETERRQ(PetscObjectComm((PetscObject)dmIn),PETSC_ERR_SUP,"Only support transfer from pre-adaptivity to post-adaptivity right now");
48289566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dmIn,&plexIn));
48299566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dmOut,&plexOut));
48300a96aa3bSJed Brown 
48319566063dSJacob Faibussowitsch   PetscCall(DMPlexTransferVecTree(plexIn,vecIn,plexOut,vecOut,inSF,outSF,inCids,outCids,useBCs,time));
48329566063dSJacob Faibussowitsch   PetscCall(PetscFree(inCids));
48339566063dSJacob Faibussowitsch   PetscCall(PetscFree(outCids));
48349566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&inSF));
48359566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&outSF));
48369566063dSJacob Faibussowitsch   PetscCall(PetscFree(inCids));
48379566063dSJacob Faibussowitsch   PetscCall(PetscFree(outCids));
48380a96aa3bSJed Brown   PetscFunctionReturn(0);
48390a96aa3bSJed Brown }
48400a96aa3bSJed Brown 
48410a96aa3bSJed Brown #define DMCreateCoordinateDM_pforest _append_pforest(DMCreateCoordinateDM)
48420a96aa3bSJed Brown static PetscErrorCode DMCreateCoordinateDM_pforest(DM dm,DM *cdm)
48430a96aa3bSJed Brown {
48440a96aa3bSJed Brown   DM             plex;
48450a96aa3bSJed Brown 
48460a96aa3bSJed Brown   PetscFunctionBegin;
48470a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
48489566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
48499566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(plex,cdm));
48509566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)*cdm));
48510a96aa3bSJed Brown   PetscFunctionReturn(0);
48520a96aa3bSJed Brown }
48530a96aa3bSJed Brown 
48540a96aa3bSJed Brown #define VecViewLocal_pforest _append_pforest(VecViewLocal)
48550a96aa3bSJed Brown static PetscErrorCode VecViewLocal_pforest(Vec vec,PetscViewer viewer)
48560a96aa3bSJed Brown {
48570a96aa3bSJed Brown   DM             dm, plex;
48580a96aa3bSJed Brown 
48590a96aa3bSJed Brown   PetscFunctionBegin;
48609566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec,&dm));
48619566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
48629566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,plex));
48639566063dSJacob Faibussowitsch   PetscCall(VecView_Plex_Local(vec,viewer));
48649566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,dm));
48650a96aa3bSJed Brown   PetscFunctionReturn(0);
48660a96aa3bSJed Brown }
48670a96aa3bSJed Brown 
48680a96aa3bSJed Brown #define VecView_pforest _append_pforest(VecView)
48690a96aa3bSJed Brown static PetscErrorCode VecView_pforest(Vec vec,PetscViewer viewer)
48700a96aa3bSJed Brown {
48710a96aa3bSJed Brown   DM             dm, plex;
48720a96aa3bSJed Brown 
48730a96aa3bSJed Brown   PetscFunctionBegin;
48749566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec,&dm));
48759566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
48769566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,plex));
48779566063dSJacob Faibussowitsch   PetscCall(VecView_Plex(vec,viewer));
48789566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,dm));
48790a96aa3bSJed Brown   PetscFunctionReturn(0);
48800a96aa3bSJed Brown }
48810a96aa3bSJed Brown 
48820a96aa3bSJed Brown #define VecView_pforest_Native _infix_pforest(VecView,_Native)
48830a96aa3bSJed Brown static PetscErrorCode VecView_pforest_Native(Vec vec,PetscViewer viewer)
48840a96aa3bSJed Brown {
48850a96aa3bSJed Brown   DM             dm, plex;
48860a96aa3bSJed Brown 
48870a96aa3bSJed Brown   PetscFunctionBegin;
48889566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec,&dm));
48899566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
48909566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,plex));
48919566063dSJacob Faibussowitsch   PetscCall(VecView_Plex_Native(vec,viewer));
48929566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,dm));
48930a96aa3bSJed Brown   PetscFunctionReturn(0);
48940a96aa3bSJed Brown }
48950a96aa3bSJed Brown 
48960a96aa3bSJed Brown #define VecLoad_pforest _append_pforest(VecLoad)
48970a96aa3bSJed Brown static PetscErrorCode VecLoad_pforest(Vec vec,PetscViewer viewer)
48980a96aa3bSJed Brown {
48990a96aa3bSJed Brown   DM             dm, plex;
49000a96aa3bSJed Brown 
49010a96aa3bSJed Brown   PetscFunctionBegin;
49029566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec,&dm));
49039566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
49049566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,plex));
49059566063dSJacob Faibussowitsch   PetscCall(VecLoad_Plex(vec,viewer));
49069566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,dm));
49070a96aa3bSJed Brown   PetscFunctionReturn(0);
49080a96aa3bSJed Brown }
49090a96aa3bSJed Brown 
49100a96aa3bSJed Brown #define VecLoad_pforest_Native _infix_pforest(VecLoad,_Native)
49110a96aa3bSJed Brown static PetscErrorCode VecLoad_pforest_Native(Vec vec,PetscViewer viewer)
49120a96aa3bSJed Brown {
49130a96aa3bSJed Brown   DM             dm, plex;
49140a96aa3bSJed Brown 
49150a96aa3bSJed Brown   PetscFunctionBegin;
49169566063dSJacob Faibussowitsch   PetscCall(VecGetDM(vec,&dm));
49179566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
49189566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,plex));
49199566063dSJacob Faibussowitsch   PetscCall(VecLoad_Plex_Native(vec,viewer));
49209566063dSJacob Faibussowitsch   PetscCall(VecSetDM(vec,dm));
49210a96aa3bSJed Brown   PetscFunctionReturn(0);
49220a96aa3bSJed Brown }
49230a96aa3bSJed Brown 
49240a96aa3bSJed Brown #define DMCreateGlobalVector_pforest _append_pforest(DMCreateGlobalVector)
49250a96aa3bSJed Brown static PetscErrorCode DMCreateGlobalVector_pforest(DM dm,Vec *vec)
49260a96aa3bSJed Brown {
49270a96aa3bSJed Brown   PetscFunctionBegin;
49289566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector_Section_Private(dm,vec));
49299566063dSJacob Faibussowitsch   /* PetscCall(VecSetOperation(*vec, VECOP_DUPLICATE, (void(*)(void)) VecDuplicate_MPI_DM)); */
49309566063dSJacob Faibussowitsch   PetscCall(VecSetOperation(*vec, VECOP_VIEW, (void (*)(void))VecView_pforest));
49319566063dSJacob Faibussowitsch   PetscCall(VecSetOperation(*vec, VECOP_VIEWNATIVE, (void (*)(void))VecView_pforest_Native));
49329566063dSJacob Faibussowitsch   PetscCall(VecSetOperation(*vec, VECOP_LOAD, (void (*)(void))VecLoad_pforest));
49339566063dSJacob Faibussowitsch   PetscCall(VecSetOperation(*vec, VECOP_LOADNATIVE, (void (*)(void))VecLoad_pforest_Native));
49340a96aa3bSJed Brown   PetscFunctionReturn(0);
49350a96aa3bSJed Brown }
49360a96aa3bSJed Brown 
49370a96aa3bSJed Brown #define DMCreateLocalVector_pforest _append_pforest(DMCreateLocalVector)
49380a96aa3bSJed Brown static PetscErrorCode DMCreateLocalVector_pforest(DM dm,Vec *vec)
49390a96aa3bSJed Brown {
49400a96aa3bSJed Brown   PetscFunctionBegin;
49419566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector_Section_Private(dm,vec));
49429566063dSJacob Faibussowitsch   PetscCall(VecSetOperation(*vec, VECOP_VIEW, (void (*)(void))VecViewLocal_pforest));
49430a96aa3bSJed Brown   PetscFunctionReturn(0);
49440a96aa3bSJed Brown }
49450a96aa3bSJed Brown 
49460a96aa3bSJed Brown #define DMCreateMatrix_pforest _append_pforest(DMCreateMatrix)
49470a96aa3bSJed Brown static PetscErrorCode DMCreateMatrix_pforest(DM dm,Mat *mat)
49480a96aa3bSJed Brown {
49490a96aa3bSJed Brown   DM             plex;
49500a96aa3bSJed Brown 
49510a96aa3bSJed Brown   PetscFunctionBegin;
49520a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
49539566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
49540a96aa3bSJed Brown   if (plex->prealloc_only != dm->prealloc_only) plex->prealloc_only = dm->prealloc_only;  /* maybe this should go into forest->plex */
49559566063dSJacob Faibussowitsch   PetscCall(DMCreateMatrix(plex,mat));
49569566063dSJacob Faibussowitsch   PetscCall(MatSetDM(*mat,dm));
49570a96aa3bSJed Brown   PetscFunctionReturn(0);
49580a96aa3bSJed Brown }
49590a96aa3bSJed Brown 
49600a96aa3bSJed Brown #define DMProjectFunctionLocal_pforest _append_pforest(DMProjectFunctionLocal)
49610a96aa3bSJed Brown static PetscErrorCode DMProjectFunctionLocal_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs) (PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void*), void **ctxs, InsertMode mode, Vec localX)
49620a96aa3bSJed Brown {
49630a96aa3bSJed Brown   DM             plex;
49640a96aa3bSJed Brown 
49650a96aa3bSJed Brown   PetscFunctionBegin;
49660a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
49679566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
49689566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(plex,time,funcs,ctxs,mode,localX));
49690a96aa3bSJed Brown   PetscFunctionReturn(0);
49700a96aa3bSJed Brown }
49710a96aa3bSJed Brown 
49720a96aa3bSJed Brown #define DMProjectFunctionLabelLocal_pforest _append_pforest(DMProjectFunctionLabelLocal)
49730a96aa3bSJed Brown static PetscErrorCode DMProjectFunctionLabelLocal_pforest(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Ncc, const PetscInt comps[], PetscErrorCode (**funcs) (PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void*), void **ctxs, InsertMode mode, Vec localX)
49740a96aa3bSJed Brown {
49750a96aa3bSJed Brown   DM             plex;
49760a96aa3bSJed Brown 
49770a96aa3bSJed Brown   PetscFunctionBegin;
49780a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
49799566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
49809566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(plex,time,label,numIds,ids,Ncc,comps,funcs,ctxs,mode,localX));
49810a96aa3bSJed Brown   PetscFunctionReturn(0);
49820a96aa3bSJed Brown }
49830a96aa3bSJed Brown 
49840a96aa3bSJed Brown #define DMProjectFieldLocal_pforest _append_pforest(DMProjectFieldLocal)
49850a96aa3bSJed Brown PetscErrorCode DMProjectFieldLocal_pforest(DM dm, PetscReal time, Vec localU,void (**funcs) (PetscInt, PetscInt, PetscInt,
49860a96aa3bSJed Brown                                                                              const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
49870a96aa3bSJed Brown                                                                              const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
49880a96aa3bSJed Brown                                                                              PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]),InsertMode mode, Vec localX)
49890a96aa3bSJed Brown {
49900a96aa3bSJed Brown   DM             plex;
49910a96aa3bSJed Brown 
49920a96aa3bSJed Brown   PetscFunctionBegin;
49930a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
49949566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
49959566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLocal(plex,time,localU,funcs,mode,localX));
49960a96aa3bSJed Brown   PetscFunctionReturn(0);
49970a96aa3bSJed Brown }
49980a96aa3bSJed Brown 
49990a96aa3bSJed Brown #define DMComputeL2Diff_pforest _append_pforest(DMComputeL2Diff)
50000a96aa3bSJed Brown PetscErrorCode DMComputeL2Diff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs) (PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void*), void **ctxs, Vec X, PetscReal *diff)
50010a96aa3bSJed Brown {
50020a96aa3bSJed Brown   DM             plex;
50030a96aa3bSJed Brown 
50040a96aa3bSJed Brown   PetscFunctionBegin;
50050a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
50069566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
50079566063dSJacob Faibussowitsch   PetscCall(DMComputeL2Diff(plex,time,funcs,ctxs,X,diff));
50080a96aa3bSJed Brown   PetscFunctionReturn(0);
50090a96aa3bSJed Brown }
50100a96aa3bSJed Brown 
50110a96aa3bSJed Brown #define DMComputeL2FieldDiff_pforest _append_pforest(DMComputeL2FieldDiff)
50120a96aa3bSJed Brown PetscErrorCode DMComputeL2FieldDiff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs) (PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void*), void **ctxs, Vec X, PetscReal diff[])
50130a96aa3bSJed Brown {
50140a96aa3bSJed Brown   DM             plex;
50150a96aa3bSJed Brown 
50160a96aa3bSJed Brown   PetscFunctionBegin;
50170a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
50189566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
50199566063dSJacob Faibussowitsch   PetscCall(DMComputeL2FieldDiff(plex,time,funcs,ctxs,X,diff));
50200a96aa3bSJed Brown   PetscFunctionReturn(0);
50210a96aa3bSJed Brown }
50220a96aa3bSJed Brown 
50230a96aa3bSJed Brown #define DMCreatelocalsection_pforest _append_pforest(DMCreatelocalsection)
50240a96aa3bSJed Brown static PetscErrorCode DMCreatelocalsection_pforest(DM dm)
50250a96aa3bSJed Brown {
50260a96aa3bSJed Brown   DM             plex;
50270a96aa3bSJed Brown   PetscSection   section;
50280a96aa3bSJed Brown 
50290a96aa3bSJed Brown   PetscFunctionBegin;
50300a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
50319566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
50329566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(plex,&section));
50339566063dSJacob Faibussowitsch   PetscCall(DMSetLocalSection(dm,section));
50340a96aa3bSJed Brown   PetscFunctionReturn(0);
50350a96aa3bSJed Brown }
50360a96aa3bSJed Brown 
50370a96aa3bSJed Brown #define DMCreateDefaultConstraints_pforest _append_pforest(DMCreateDefaultConstraints)
50380a96aa3bSJed Brown static PetscErrorCode DMCreateDefaultConstraints_pforest(DM dm)
50390a96aa3bSJed Brown {
50400a96aa3bSJed Brown   DM             plex;
50410a96aa3bSJed Brown   Mat            mat;
504279769bd5SJed Brown   Vec            bias;
50430a96aa3bSJed Brown   PetscSection   section;
50440a96aa3bSJed Brown 
50450a96aa3bSJed Brown   PetscFunctionBegin;
50460a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
50479566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
50489566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(plex,&section,&mat,&bias));
50499566063dSJacob Faibussowitsch   PetscCall(DMSetDefaultConstraints(dm,section,mat,bias));
50500a96aa3bSJed Brown   PetscFunctionReturn(0);
50510a96aa3bSJed Brown }
50520a96aa3bSJed Brown 
50530a96aa3bSJed Brown #define DMGetDimPoints_pforest _append_pforest(DMGetDimPoints)
50540a96aa3bSJed Brown static PetscErrorCode DMGetDimPoints_pforest(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd)
50550a96aa3bSJed Brown {
50560a96aa3bSJed Brown   DM             plex;
50570a96aa3bSJed Brown 
50580a96aa3bSJed Brown   PetscFunctionBegin;
50590a96aa3bSJed Brown   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
50609566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
50619566063dSJacob Faibussowitsch   PetscCall(DMGetDimPoints(plex,dim,cStart,cEnd));
50620a96aa3bSJed Brown   PetscFunctionReturn(0);
50630a96aa3bSJed Brown }
50640a96aa3bSJed Brown 
50650a96aa3bSJed Brown /* Need to forward declare */
50660a96aa3bSJed Brown #define DMInitialize_pforest _append_pforest(DMInitialize)
50670a96aa3bSJed Brown static PetscErrorCode DMInitialize_pforest(DM dm);
50680a96aa3bSJed Brown 
50690a96aa3bSJed Brown #define DMClone_pforest _append_pforest(DMClone)
50700a96aa3bSJed Brown static PetscErrorCode DMClone_pforest(DM dm, DM *newdm)
50710a96aa3bSJed Brown {
50720a96aa3bSJed Brown   PetscFunctionBegin;
50739566063dSJacob Faibussowitsch   PetscCall(DMClone_Forest(dm,newdm));
50749566063dSJacob Faibussowitsch   PetscCall(DMInitialize_pforest(*newdm));
50750a96aa3bSJed Brown   PetscFunctionReturn(0);
50760a96aa3bSJed Brown }
50770a96aa3bSJed Brown 
50780a96aa3bSJed Brown #define DMForestCreateCellChart_pforest _append_pforest(DMForestCreateCellChart)
50790a96aa3bSJed Brown static PetscErrorCode DMForestCreateCellChart_pforest(DM dm, PetscInt *cStart, PetscInt *cEnd)
50800a96aa3bSJed Brown {
50810a96aa3bSJed Brown   DM_Forest         *forest;
50820a96aa3bSJed Brown   DM_Forest_pforest *pforest;
50830a96aa3bSJed Brown   PetscInt          overlap;
50840a96aa3bSJed Brown 
50850a96aa3bSJed Brown   PetscFunctionBegin;
50869566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dm));
50870a96aa3bSJed Brown   forest  = (DM_Forest*) dm->data;
50880a96aa3bSJed Brown   pforest = (DM_Forest_pforest*) forest->data;
50890a96aa3bSJed Brown   *cStart = 0;
50909566063dSJacob Faibussowitsch   PetscCall(DMForestGetPartitionOverlap(dm,&overlap));
50910a96aa3bSJed Brown   if (overlap && pforest->ghost) {
50920a96aa3bSJed Brown     *cEnd = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[pforest->forest->mpisize];
50930a96aa3bSJed Brown   } else {
50940a96aa3bSJed Brown     *cEnd = pforest->forest->local_num_quadrants;
50950a96aa3bSJed Brown   }
50960a96aa3bSJed Brown   PetscFunctionReturn(0);
50970a96aa3bSJed Brown }
50980a96aa3bSJed Brown 
50990a96aa3bSJed Brown #define DMForestCreateCellSF_pforest _append_pforest(DMForestCreateCellSF)
51000a96aa3bSJed Brown static PetscErrorCode DMForestCreateCellSF_pforest(DM dm, PetscSF *cellSF)
51010a96aa3bSJed Brown {
51020a96aa3bSJed Brown   DM_Forest         *forest;
51030a96aa3bSJed Brown   DM_Forest_pforest *pforest;
51040a96aa3bSJed Brown   PetscMPIInt       rank;
51050a96aa3bSJed Brown   PetscInt          overlap;
51060a96aa3bSJed Brown   PetscInt          cStart, cEnd, cLocalStart, cLocalEnd;
51070a96aa3bSJed Brown   PetscInt          nRoots, nLeaves, *mine = NULL;
51080a96aa3bSJed Brown   PetscSFNode       *remote = NULL;
51090a96aa3bSJed Brown   PetscSF           sf;
51100a96aa3bSJed Brown 
51110a96aa3bSJed Brown   PetscFunctionBegin;
51129566063dSJacob Faibussowitsch   PetscCall(DMForestGetCellChart(dm,&cStart,&cEnd));
51130a96aa3bSJed Brown   forest      = (DM_Forest*)         dm->data;
51140a96aa3bSJed Brown   pforest     = (DM_Forest_pforest*) forest->data;
51150a96aa3bSJed Brown   nRoots      = cEnd - cStart;
51160a96aa3bSJed Brown   cLocalStart = pforest->cLocalStart;
51170a96aa3bSJed Brown   cLocalEnd   = pforest->cLocalEnd;
51180a96aa3bSJed Brown   nLeaves     = 0;
51199566063dSJacob Faibussowitsch   PetscCall(DMForestGetPartitionOverlap(dm,&overlap));
51209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank));
51210a96aa3bSJed Brown   if (overlap && pforest->ghost) {
51220a96aa3bSJed Brown     PetscSFNode      *mirror;
51230a96aa3bSJed Brown     p4est_quadrant_t *mirror_array;
51240a96aa3bSJed Brown     PetscInt         nMirror, nGhostPre, nSelf, q;
51250a96aa3bSJed Brown     void             **mirrorPtrs;
51260a96aa3bSJed Brown 
51270a96aa3bSJed Brown     nMirror      = (PetscInt) pforest->ghost->mirrors.elem_count;
51280a96aa3bSJed Brown     nSelf        = cLocalEnd - cLocalStart;
51290a96aa3bSJed Brown     nLeaves      = nRoots - nSelf;
51300a96aa3bSJed Brown     nGhostPre    = (PetscInt) pforest->ghost->proc_offsets[rank];
51319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nLeaves,&mine));
51329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nLeaves,&remote));
51339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nMirror,&mirror,nMirror,&mirrorPtrs));
51340a96aa3bSJed Brown     mirror_array = (p4est_quadrant_t*) pforest->ghost->mirrors.array;
51350a96aa3bSJed Brown     for (q = 0; q < nMirror; q++) {
51360a96aa3bSJed Brown       p4est_quadrant_t *mir = &(mirror_array[q]);
51370a96aa3bSJed Brown 
51380a96aa3bSJed Brown       mirror[q].rank  = rank;
51390a96aa3bSJed Brown       mirror[q].index = (PetscInt) mir->p.piggy3.local_num + cLocalStart;
51400a96aa3bSJed Brown       mirrorPtrs[q]   = (void*) &(mirror[q]);
51410a96aa3bSJed Brown     }
5142792fecdfSBarry Smith     PetscCallP4est(p4est_ghost_exchange_custom,(pforest->forest,pforest->ghost,sizeof(PetscSFNode),mirrorPtrs,remote));
51439566063dSJacob Faibussowitsch     PetscCall(PetscFree2(mirror,mirrorPtrs));
51440a96aa3bSJed Brown     for (q = 0; q < nGhostPre; q++) mine[q] = q;
51450a96aa3bSJed Brown     for (; q < nLeaves; q++) mine[q] = (q - nGhostPre) + cLocalEnd;
51460a96aa3bSJed Brown   }
51479566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm),&sf));
51489566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf,nRoots,nLeaves,mine,PETSC_OWN_POINTER,remote,PETSC_OWN_POINTER));
51490a96aa3bSJed Brown   *cellSF = sf;
51500a96aa3bSJed Brown   PetscFunctionReturn(0);
51510a96aa3bSJed Brown }
51520a96aa3bSJed Brown 
51530a96aa3bSJed Brown static PetscErrorCode DMCreateNeumannOverlap_pforest(DM dm, IS* ovl, Mat *J, PetscErrorCode (**setup)(Mat, PetscReal, Vec, Vec, PetscReal, IS, void*), void **setup_ctx)
51540a96aa3bSJed Brown {
51550a96aa3bSJed Brown   DM             plex;
51560a96aa3bSJed Brown 
51570a96aa3bSJed Brown   PetscFunctionBegin;
51589566063dSJacob Faibussowitsch   PetscCall(DMPforestGetPlex(dm,&plex));
51599566063dSJacob Faibussowitsch   PetscCall(DMCreateNeumannOverlap_Plex(plex,ovl,J,setup,setup_ctx));
51600a96aa3bSJed Brown   if (!*setup) {
51619566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, "MatComputeNeumannOverlap_C", setup));
51620a96aa3bSJed Brown     if (*setup) {
51639566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)*ovl, "_DM_Original_HPDDM", (PetscObject)dm));
51640a96aa3bSJed Brown     }
51650a96aa3bSJed Brown   }
51660a96aa3bSJed Brown   PetscFunctionReturn(0);
51670a96aa3bSJed Brown }
51680a96aa3bSJed Brown 
51690a96aa3bSJed Brown static PetscErrorCode DMInitialize_pforest(DM dm)
51700a96aa3bSJed Brown {
51710a96aa3bSJed Brown   PetscFunctionBegin;
51720a96aa3bSJed Brown   dm->ops->setup                     = DMSetUp_pforest;
51730a96aa3bSJed Brown   dm->ops->view                      = DMView_pforest;
51740a96aa3bSJed Brown   dm->ops->clone                     = DMClone_pforest;
51750a96aa3bSJed Brown   dm->ops->createinterpolation       = DMCreateInterpolation_pforest;
51760a96aa3bSJed Brown   dm->ops->createinjection           = DMCreateInjection_pforest;
51770a96aa3bSJed Brown   dm->ops->setfromoptions            = DMSetFromOptions_pforest;
51780a96aa3bSJed Brown   dm->ops->createcoordinatedm        = DMCreateCoordinateDM_pforest;
51790a96aa3bSJed Brown   dm->ops->createglobalvector        = DMCreateGlobalVector_pforest;
51800a96aa3bSJed Brown   dm->ops->createlocalvector         = DMCreateLocalVector_pforest;
51810a96aa3bSJed Brown   dm->ops->creatematrix              = DMCreateMatrix_pforest;
51820a96aa3bSJed Brown   dm->ops->projectfunctionlocal      = DMProjectFunctionLocal_pforest;
51830a96aa3bSJed Brown   dm->ops->projectfunctionlabellocal = DMProjectFunctionLabelLocal_pforest;
51840a96aa3bSJed Brown   dm->ops->projectfieldlocal         = DMProjectFieldLocal_pforest;
51850a96aa3bSJed Brown   dm->ops->createlocalsection        = DMCreatelocalsection_pforest;
51860a96aa3bSJed Brown   dm->ops->createdefaultconstraints  = DMCreateDefaultConstraints_pforest;
51870a96aa3bSJed Brown   dm->ops->computel2diff             = DMComputeL2Diff_pforest;
51880a96aa3bSJed Brown   dm->ops->computel2fielddiff        = DMComputeL2FieldDiff_pforest;
51890a96aa3bSJed Brown   dm->ops->getdimpoints              = DMGetDimPoints_pforest;
51900a96aa3bSJed Brown 
51919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm,PetscStringize(DMConvert_plex_pforest) "_C",DMConvert_plex_pforest));
51929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm,PetscStringize(DMConvert_pforest_plex) "_C",DMConvert_pforest_plex));
51939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMCreateNeumannOverlap_C",DMCreateNeumannOverlap_pforest));
51949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexGetOverlap_C",DMForestGetPartitionOverlap));
51950a96aa3bSJed Brown   PetscFunctionReturn(0);
51960a96aa3bSJed Brown }
51970a96aa3bSJed Brown 
51980a96aa3bSJed Brown #define DMCreate_pforest _append_pforest(DMCreate)
51990a96aa3bSJed Brown PETSC_EXTERN PetscErrorCode DMCreate_pforest(DM dm)
52000a96aa3bSJed Brown {
52010a96aa3bSJed Brown   DM_Forest         *forest;
52020a96aa3bSJed Brown   DM_Forest_pforest *pforest;
52030a96aa3bSJed Brown 
52040a96aa3bSJed Brown   PetscFunctionBegin;
52059566063dSJacob Faibussowitsch   PetscCall(PetscP4estInitialize());
52069566063dSJacob Faibussowitsch   PetscCall(DMCreate_Forest(dm));
52079566063dSJacob Faibussowitsch   PetscCall(DMInitialize_pforest(dm));
52089566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(dm,P4EST_DIM));
52090a96aa3bSJed Brown 
52100a96aa3bSJed Brown   /* set forest defaults */
52119566063dSJacob Faibussowitsch   PetscCall(DMForestSetTopology(dm,"unit"));
52129566063dSJacob Faibussowitsch   PetscCall(DMForestSetMinimumRefinement(dm,0));
52139566063dSJacob Faibussowitsch   PetscCall(DMForestSetInitialRefinement(dm,0));
52149566063dSJacob Faibussowitsch   PetscCall(DMForestSetMaximumRefinement(dm,P4EST_QMAXLEVEL));
52159566063dSJacob Faibussowitsch   PetscCall(DMForestSetGradeFactor(dm,2));
52169566063dSJacob Faibussowitsch   PetscCall(DMForestSetAdjacencyDimension(dm,0));
52179566063dSJacob Faibussowitsch   PetscCall(DMForestSetPartitionOverlap(dm,0));
52180a96aa3bSJed Brown 
52190a96aa3bSJed Brown   /* create p4est data */
52209566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(dm,&pforest));
52210a96aa3bSJed Brown 
52220a96aa3bSJed Brown   forest                            = (DM_Forest*) dm->data;
52230a96aa3bSJed Brown   forest->data                      = pforest;
52240a96aa3bSJed Brown   forest->destroy                   = DMForestDestroy_pforest;
52250a96aa3bSJed Brown   forest->ftemplate                 = DMForestTemplate_pforest;
52260a96aa3bSJed Brown   forest->transfervec               = DMForestTransferVec_pforest;
52270a96aa3bSJed Brown   forest->transfervecfrombase       = DMForestTransferVecFromBase_pforest;
52280a96aa3bSJed Brown   forest->createcellchart           = DMForestCreateCellChart_pforest;
52290a96aa3bSJed Brown   forest->createcellsf              = DMForestCreateCellSF_pforest;
52300a96aa3bSJed Brown   forest->clearadaptivityforest     = DMForestClearAdaptivityForest_pforest;
52310a96aa3bSJed Brown   forest->getadaptivitysuccess      = DMForestGetAdaptivitySuccess_pforest;
52320a96aa3bSJed Brown   pforest->topo                     = NULL;
52330a96aa3bSJed Brown   pforest->forest                   = NULL;
52340a96aa3bSJed Brown   pforest->ghost                    = NULL;
52350a96aa3bSJed Brown   pforest->lnodes                   = NULL;
52360a96aa3bSJed Brown   pforest->partition_for_coarsening = PETSC_TRUE;
52370a96aa3bSJed Brown   pforest->coarsen_hierarchy        = PETSC_FALSE;
52380a96aa3bSJed Brown   pforest->cLocalStart              = -1;
52390a96aa3bSJed Brown   pforest->cLocalEnd                = -1;
52400a96aa3bSJed Brown   pforest->labelsFinalized          = PETSC_FALSE;
52410a96aa3bSJed Brown   pforest->ghostName                = NULL;
52420a96aa3bSJed Brown   PetscFunctionReturn(0);
52430a96aa3bSJed Brown }
52440a96aa3bSJed Brown 
52450a96aa3bSJed Brown #endif /* defined(PETSC_HAVE_P4EST) */
5246