1a4963045SJacob Faibussowitsch #pragma once 23ea99036SJacob Faibussowitsch 30a96aa3bSJed Brown #include <petscds.h> 40a96aa3bSJed Brown #include <petsc/private/dmimpl.h> 50a96aa3bSJed Brown #include <petsc/private/dmforestimpl.h> 60a96aa3bSJed Brown #include <petsc/private/dmpleximpl.h> 70a96aa3bSJed Brown #include <petsc/private/dmlabelimpl.h> 80a96aa3bSJed Brown #include <petsc/private/viewerimpl.h> 90a96aa3bSJed Brown #include <../src/sys/classes/viewer/impls/vtk/vtkvimpl.h> 100a96aa3bSJed Brown #include "petsc_p4est_package.h" 110a96aa3bSJed Brown 120a96aa3bSJed Brown #if defined(PETSC_HAVE_P4EST) 130a96aa3bSJed Brown 140a96aa3bSJed Brown #if !defined(P4_TO_P8) 150a96aa3bSJed Brown #include <p4est.h> 160a96aa3bSJed Brown #include <p4est_extended.h> 170a96aa3bSJed Brown #include <p4est_geometry.h> 180a96aa3bSJed Brown #include <p4est_ghost.h> 190a96aa3bSJed Brown #include <p4est_lnodes.h> 200a96aa3bSJed Brown #include <p4est_vtk.h> 210a96aa3bSJed Brown #include <p4est_plex.h> 220a96aa3bSJed Brown #include <p4est_bits.h> 230a96aa3bSJed Brown #include <p4est_algorithms.h> 240a96aa3bSJed Brown #else 250a96aa3bSJed Brown #include <p8est.h> 260a96aa3bSJed Brown #include <p8est_extended.h> 270a96aa3bSJed Brown #include <p8est_geometry.h> 280a96aa3bSJed Brown #include <p8est_ghost.h> 290a96aa3bSJed Brown #include <p8est_lnodes.h> 300a96aa3bSJed Brown #include <p8est_vtk.h> 310a96aa3bSJed Brown #include <p8est_plex.h> 320a96aa3bSJed Brown #include <p8est_bits.h> 330a96aa3bSJed Brown #include <p8est_algorithms.h> 340a96aa3bSJed Brown #endif 350a96aa3bSJed Brown 369371c9d4SSatish Balay typedef enum { 379371c9d4SSatish Balay PATTERN_HASH, 389371c9d4SSatish Balay PATTERN_FRACTAL, 399371c9d4SSatish Balay PATTERN_CORNER, 409371c9d4SSatish Balay PATTERN_CENTER, 419371c9d4SSatish Balay PATTERN_COUNT 429371c9d4SSatish Balay } DMRefinePattern; 430a96aa3bSJed Brown static const char *DMRefinePatternName[PATTERN_COUNT] = {"hash", "fractal", "corner", "center"}; 440a96aa3bSJed Brown 459371c9d4SSatish Balay typedef struct _DMRefinePatternCtx { 460a96aa3bSJed Brown PetscInt corner; 470a96aa3bSJed Brown PetscBool fractal[P4EST_CHILDREN]; 480a96aa3bSJed Brown PetscReal hashLikelihood; 490a96aa3bSJed Brown PetscInt maxLevel; 500a96aa3bSJed Brown p4est_refine_t refine_fn; 519371c9d4SSatish Balay } DMRefinePatternCtx; 520a96aa3bSJed Brown 53d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Corner(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 54d71ae5a4SJacob Faibussowitsch { 550a96aa3bSJed Brown p4est_quadrant_t root, rootcorner; 560a96aa3bSJed Brown DMRefinePatternCtx *ctx; 570a96aa3bSJed Brown 580a96aa3bSJed Brown ctx = (DMRefinePatternCtx *)p4est->user_pointer; 590a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 600a96aa3bSJed Brown 610a96aa3bSJed Brown root.x = root.y = 0; 620a96aa3bSJed Brown #if defined(P4_TO_P8) 630a96aa3bSJed Brown root.z = 0; 640a96aa3bSJed Brown #endif 650a96aa3bSJed Brown root.level = 0; 660a96aa3bSJed Brown p4est_quadrant_corner_descendant(&root, &rootcorner, ctx->corner, quadrant->level); 670a96aa3bSJed Brown if (p4est_quadrant_is_equal(quadrant, &rootcorner)) return 1; 680a96aa3bSJed Brown return 0; 690a96aa3bSJed Brown } 700a96aa3bSJed Brown 71d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Center(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 72d71ae5a4SJacob Faibussowitsch { 730a96aa3bSJed Brown int cid; 740a96aa3bSJed Brown p4est_quadrant_t ancestor, ancestorcorner; 750a96aa3bSJed Brown DMRefinePatternCtx *ctx; 760a96aa3bSJed Brown 770a96aa3bSJed Brown ctx = (DMRefinePatternCtx *)p4est->user_pointer; 780a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 790a96aa3bSJed Brown if (quadrant->level <= 1) return 1; 800a96aa3bSJed Brown 810a96aa3bSJed Brown p4est_quadrant_ancestor(quadrant, 1, &ancestor); 820a96aa3bSJed Brown cid = p4est_quadrant_child_id(&ancestor); 830a96aa3bSJed Brown p4est_quadrant_corner_descendant(&ancestor, &ancestorcorner, P4EST_CHILDREN - 1 - cid, quadrant->level); 840a96aa3bSJed Brown if (p4est_quadrant_is_equal(quadrant, &ancestorcorner)) return 1; 850a96aa3bSJed Brown return 0; 860a96aa3bSJed Brown } 870a96aa3bSJed Brown 88d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Fractal(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 89d71ae5a4SJacob Faibussowitsch { 900a96aa3bSJed Brown int cid; 910a96aa3bSJed Brown DMRefinePatternCtx *ctx; 920a96aa3bSJed Brown 930a96aa3bSJed Brown ctx = (DMRefinePatternCtx *)p4est->user_pointer; 940a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 950a96aa3bSJed Brown if (!quadrant->level) return 1; 960a96aa3bSJed Brown cid = p4est_quadrant_child_id(quadrant); 970a96aa3bSJed Brown if (ctx->fractal[cid ^ ((int)(quadrant->level % P4EST_CHILDREN))]) return 1; 980a96aa3bSJed Brown return 0; 990a96aa3bSJed Brown } 1000a96aa3bSJed Brown 1010a96aa3bSJed Brown /* simplified from MurmurHash3 by Austin Appleby */ 1020a96aa3bSJed Brown #define DMPROT32(x, y) ((x << y) | (x >> (32 - y))) 103d71ae5a4SJacob Faibussowitsch static uint32_t DMPforestHash(const uint32_t *blocks, uint32_t nblocks) 104d71ae5a4SJacob Faibussowitsch { 1050a96aa3bSJed Brown uint32_t c1 = 0xcc9e2d51; 1060a96aa3bSJed Brown uint32_t c2 = 0x1b873593; 1070a96aa3bSJed Brown uint32_t r1 = 15; 1080a96aa3bSJed Brown uint32_t r2 = 13; 1090a96aa3bSJed Brown uint32_t m = 5; 1100a96aa3bSJed Brown uint32_t n = 0xe6546b64; 1110a96aa3bSJed Brown uint32_t hash = 0; 1120a96aa3bSJed Brown int len = nblocks * 4; 1130a96aa3bSJed Brown uint32_t i; 1140a96aa3bSJed Brown 1150a96aa3bSJed Brown for (i = 0; i < nblocks; i++) { 1160a96aa3bSJed Brown uint32_t k; 1170a96aa3bSJed Brown 1180a96aa3bSJed Brown k = blocks[i]; 1190a96aa3bSJed Brown k *= c1; 1200a96aa3bSJed Brown k = DMPROT32(k, r1); 1210a96aa3bSJed Brown k *= c2; 1220a96aa3bSJed Brown 1230a96aa3bSJed Brown hash ^= k; 1240a96aa3bSJed Brown hash = DMPROT32(hash, r2) * m + n; 1250a96aa3bSJed Brown } 1260a96aa3bSJed Brown 1270a96aa3bSJed Brown hash ^= len; 1280a96aa3bSJed Brown hash ^= (hash >> 16); 1290a96aa3bSJed Brown hash *= 0x85ebca6b; 1300a96aa3bSJed Brown hash ^= (hash >> 13); 1310a96aa3bSJed Brown hash *= 0xc2b2ae35; 1320a96aa3bSJed Brown hash ^= (hash >> 16); 1330a96aa3bSJed Brown 1340a96aa3bSJed Brown return hash; 1350a96aa3bSJed Brown } 1360a96aa3bSJed Brown 1370a96aa3bSJed Brown #if defined(UINT32_MAX) 1380a96aa3bSJed Brown #define DMP4EST_HASH_MAX UINT32_MAX 1390a96aa3bSJed Brown #else 1400a96aa3bSJed Brown #define DMP4EST_HASH_MAX ((uint32_t)0xffffffff) 1410a96aa3bSJed Brown #endif 1420a96aa3bSJed Brown 143d71ae5a4SJacob Faibussowitsch static int DMRefinePattern_Hash(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 144d71ae5a4SJacob Faibussowitsch { 1450a96aa3bSJed Brown uint32_t data[5]; 1460a96aa3bSJed Brown uint32_t result; 1470a96aa3bSJed Brown DMRefinePatternCtx *ctx; 1480a96aa3bSJed Brown 1490a96aa3bSJed Brown ctx = (DMRefinePatternCtx *)p4est->user_pointer; 1500a96aa3bSJed Brown if (quadrant->level >= ctx->maxLevel) return 0; 1510a96aa3bSJed Brown data[0] = ((uint32_t)quadrant->level) << 24; 1520a96aa3bSJed Brown data[1] = (uint32_t)which_tree; 1530a96aa3bSJed Brown data[2] = (uint32_t)quadrant->x; 1540a96aa3bSJed Brown data[3] = (uint32_t)quadrant->y; 1550a96aa3bSJed Brown #if defined(P4_TO_P8) 1560a96aa3bSJed Brown data[4] = (uint32_t)quadrant->z; 1570a96aa3bSJed Brown #endif 1580a96aa3bSJed Brown 1590a96aa3bSJed Brown result = DMPforestHash(data, 2 + P4EST_DIM); 1600a96aa3bSJed Brown if (((double)result / (double)DMP4EST_HASH_MAX) < ctx->hashLikelihood) return 1; 1610a96aa3bSJed Brown return 0; 1620a96aa3bSJed Brown } 1630a96aa3bSJed Brown 1640a96aa3bSJed Brown #define DMConvert_pforest_plex _infix_pforest(DMConvert, _plex) 1650a96aa3bSJed Brown static PetscErrorCode DMConvert_pforest_plex(DM, DMType, DM *); 1660a96aa3bSJed Brown 1670a96aa3bSJed Brown #define DMFTopology_pforest _append_pforest(DMFTopology) 1680a96aa3bSJed Brown typedef struct { 1690a96aa3bSJed Brown PetscInt refct; 1700a96aa3bSJed Brown p4est_connectivity_t *conn; 1710a96aa3bSJed Brown p4est_geometry_t *geom; 1720a96aa3bSJed Brown PetscInt *tree_face_to_uniq; /* p4est does not explicitly enumerate facets, but we must to keep track of labels */ 1730a96aa3bSJed Brown } DMFTopology_pforest; 1740a96aa3bSJed Brown 1750a96aa3bSJed Brown #define DM_Forest_pforest _append_pforest(DM_Forest) 1760a96aa3bSJed Brown typedef struct { 1770a96aa3bSJed Brown DMFTopology_pforest *topo; 1780a96aa3bSJed Brown p4est_t *forest; 1790a96aa3bSJed Brown p4est_ghost_t *ghost; 1800a96aa3bSJed Brown p4est_lnodes_t *lnodes; 1810a96aa3bSJed Brown PetscBool partition_for_coarsening; 1820a96aa3bSJed Brown PetscBool coarsen_hierarchy; 1830a96aa3bSJed Brown PetscBool labelsFinalized; 1840a96aa3bSJed Brown PetscBool adaptivitySuccess; 1850a96aa3bSJed Brown PetscInt cLocalStart; 1860a96aa3bSJed Brown PetscInt cLocalEnd; 1870a96aa3bSJed Brown DM plex; 1880a96aa3bSJed Brown char *ghostName; 1890a96aa3bSJed Brown PetscSF pointAdaptToSelfSF; 1900a96aa3bSJed Brown PetscSF pointSelfToAdaptSF; 1910a96aa3bSJed Brown PetscInt *pointAdaptToSelfCids; 1920a96aa3bSJed Brown PetscInt *pointSelfToAdaptCids; 1930a96aa3bSJed Brown } DM_Forest_pforest; 1940a96aa3bSJed Brown 1950a96aa3bSJed Brown #define DM_Forest_geometry_pforest _append_pforest(DM_Forest_geometry) 1960a96aa3bSJed Brown typedef struct { 1970a96aa3bSJed Brown DM base; 1980a96aa3bSJed Brown PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *); 1990a96aa3bSJed Brown void *mapCtx; 2000a96aa3bSJed Brown PetscInt coordDim; 2010a96aa3bSJed Brown p4est_geometry_t *inner; 2029371c9d4SSatish Balay } DM_Forest_geometry_pforest; 2030a96aa3bSJed Brown 2040a96aa3bSJed Brown #define GeometryMapping_pforest _append_pforest(GeometryMapping) 205d71ae5a4SJacob Faibussowitsch static void GeometryMapping_pforest(p4est_geometry_t *geom, p4est_topidx_t which_tree, const double abc[3], double xyz[3]) 206d71ae5a4SJacob Faibussowitsch { 2070a96aa3bSJed Brown DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest *)geom->user; 2080a96aa3bSJed Brown PetscReal PetscABC[3] = {0.}; 2090a96aa3bSJed Brown PetscReal PetscXYZ[3] = {0.}; 2100a96aa3bSJed Brown PetscInt i, d = PetscMin(3, geom_pforest->coordDim); 2110a96aa3bSJed Brown double ABC[3]; 2120a96aa3bSJed Brown PetscErrorCode ierr; 2130a96aa3bSJed Brown 2140a96aa3bSJed Brown (geom_pforest->inner->X)(geom_pforest->inner, which_tree, abc, ABC); 2150a96aa3bSJed Brown 2160a96aa3bSJed Brown for (i = 0; i < d; i++) PetscABC[i] = ABC[i]; 2179371c9d4SSatish Balay ierr = (geom_pforest->map)(geom_pforest->base, (PetscInt)which_tree, geom_pforest->coordDim, PetscABC, PetscXYZ, geom_pforest->mapCtx); 2189371c9d4SSatish Balay PETSC_P4EST_ASSERT(!ierr); 2190a96aa3bSJed Brown for (i = 0; i < d; i++) xyz[i] = PetscXYZ[i]; 2200a96aa3bSJed Brown } 2210a96aa3bSJed Brown 2220a96aa3bSJed Brown #define GeometryDestroy_pforest _append_pforest(GeometryDestroy) 223d71ae5a4SJacob Faibussowitsch static void GeometryDestroy_pforest(p4est_geometry_t *geom) 224d71ae5a4SJacob Faibussowitsch { 2250a96aa3bSJed Brown DM_Forest_geometry_pforest *geom_pforest = (DM_Forest_geometry_pforest *)geom->user; 2260a96aa3bSJed Brown PetscErrorCode ierr; 2270a96aa3bSJed Brown 2280a96aa3bSJed Brown p4est_geometry_destroy(geom_pforest->inner); 2299371c9d4SSatish Balay ierr = PetscFree(geom->user); 2309371c9d4SSatish Balay PETSC_P4EST_ASSERT(!ierr); 2319371c9d4SSatish Balay ierr = PetscFree(geom); 2329371c9d4SSatish Balay PETSC_P4EST_ASSERT(!ierr); 2330a96aa3bSJed Brown } 2340a96aa3bSJed Brown 2350a96aa3bSJed Brown #define DMFTopologyDestroy_pforest _append_pforest(DMFTopologyDestroy) 236d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFTopologyDestroy_pforest(DMFTopology_pforest **topo) 237d71ae5a4SJacob Faibussowitsch { 2380a96aa3bSJed Brown PetscFunctionBegin; 2393ba16761SJacob Faibussowitsch if (!(*topo)) PetscFunctionReturn(PETSC_SUCCESS); 2400a96aa3bSJed Brown if (--((*topo)->refct) > 0) { 2410a96aa3bSJed Brown *topo = NULL; 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2430a96aa3bSJed Brown } 244792fecdfSBarry Smith if ((*topo)->geom) PetscCallP4est(p4est_geometry_destroy, ((*topo)->geom)); 245792fecdfSBarry Smith PetscCallP4est(p4est_connectivity_destroy, ((*topo)->conn)); 2469566063dSJacob Faibussowitsch PetscCall(PetscFree((*topo)->tree_face_to_uniq)); 2479566063dSJacob Faibussowitsch PetscCall(PetscFree(*topo)); 2480a96aa3bSJed Brown *topo = NULL; 2493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2500a96aa3bSJed Brown } 2510a96aa3bSJed Brown 2520a96aa3bSJed Brown static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t *, PetscInt **); 2530a96aa3bSJed Brown 2540a96aa3bSJed Brown #define DMFTopologyCreateBrick_pforest _append_pforest(DMFTopologyCreateBrick) 255d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFTopologyCreateBrick_pforest(DM dm, PetscInt N[], PetscInt P[], PetscReal B[], DMFTopology_pforest **topo, PetscBool useMorton) 256d71ae5a4SJacob Faibussowitsch { 2570a96aa3bSJed Brown double *vertices; 2580a96aa3bSJed Brown PetscInt i, numVerts; 2590a96aa3bSJed Brown 2600a96aa3bSJed Brown PetscFunctionBegin; 26128b400f6SJacob Faibussowitsch PetscCheck(useMorton, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Lexicographic ordering not implemented yet"); 2624dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(topo)); 2630a96aa3bSJed Brown 2640a96aa3bSJed Brown (*topo)->refct = 1; 2650a96aa3bSJed Brown #if !defined(P4_TO_P8) 266792fecdfSBarry Smith PetscCallP4estReturn((*topo)->conn, p4est_connectivity_new_brick, ((int)N[0], (int)N[1], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1)); 2670a96aa3bSJed Brown #else 268792fecdfSBarry Smith PetscCallP4estReturn((*topo)->conn, p8est_connectivity_new_brick, ((int)N[0], (int)N[1], (int)N[2], (P[0] == DM_BOUNDARY_NONE) ? 0 : 1, (P[1] == DM_BOUNDARY_NONE) ? 0 : 1, (P[2] == DM_BOUNDARY_NONE) ? 0 : 1)); 2690a96aa3bSJed Brown #endif 2700a96aa3bSJed Brown numVerts = (*topo)->conn->num_vertices; 2710a96aa3bSJed Brown vertices = (*topo)->conn->vertices; 2720a96aa3bSJed Brown for (i = 0; i < 3 * numVerts; i++) { 2730a96aa3bSJed Brown PetscInt j = i % 3; 2740a96aa3bSJed Brown 2750a96aa3bSJed Brown vertices[i] = B[2 * j] + (vertices[i] / N[j]) * (B[2 * j + 1] - B[2 * j]); 2760a96aa3bSJed Brown } 2770a96aa3bSJed Brown (*topo)->geom = NULL; 2789566063dSJacob Faibussowitsch PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn, &(*topo)->tree_face_to_uniq)); 2793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2800a96aa3bSJed Brown } 2810a96aa3bSJed Brown 2820a96aa3bSJed Brown #define DMFTopologyCreate_pforest _append_pforest(DMFTopologyCreate) 283d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFTopologyCreate_pforest(DM dm, DMForestTopology topologyName, DMFTopology_pforest **topo) 284d71ae5a4SJacob Faibussowitsch { 2850a96aa3bSJed Brown const char *name = (const char *)topologyName; 2860a96aa3bSJed Brown const char *prefix; 2870a96aa3bSJed Brown PetscBool isBrick, isShell, isSphere, isMoebius; 2880a96aa3bSJed Brown 2890a96aa3bSJed Brown PetscFunctionBegin; 2900a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2914f572ea9SToby Isaac PetscAssertPointer(name, 2); 2924f572ea9SToby Isaac PetscAssertPointer(topo, 3); 2939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "brick", &isBrick)); 2949566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "shell", &isShell)); 2959566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "sphere", &isSphere)); 2969566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "moebius", &isMoebius)); 2979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 2980a96aa3bSJed Brown if (isBrick) { 2990a96aa3bSJed Brown PetscBool flgN, flgP, flgM, flgB, useMorton = PETSC_TRUE, periodic = PETSC_FALSE; 3000a96aa3bSJed Brown PetscInt N[3] = {2, 2, 2}, P[3] = {0, 0, 0}, nretN = P4EST_DIM, nretP = P4EST_DIM, nretB = 2 * P4EST_DIM, i; 3014fb89dddSMatthew G. Knepley PetscReal B[6] = {0.0, 1.0, 0.0, 1.0, 0.0, 1.0}, Lstart[3] = {0., 0., 0.}, L[3] = {-1.0, -1.0, -1.0}, maxCell[3] = {-1.0, -1.0, -1.0}; 3020a96aa3bSJed Brown 3030a96aa3bSJed Brown if (dm->setfromoptionscalled) { 3049566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_size", N, &nretN, &flgN)); 3059566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_periodicity", P, &nretP, &flgP)); 3069566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetRealArray(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_bounds", B, &nretB, &flgB)); 3079566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options, prefix, "-dm_p4est_brick_use_morton_curve", &useMorton, &flgM)); 3081dca8a05SBarry Smith PetscCheck(!flgN || nretN == P4EST_DIM, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Need to give %d sizes in -dm_p4est_brick_size, gave %" PetscInt_FMT, P4EST_DIM, nretN); 3091dca8a05SBarry Smith PetscCheck(!flgP || nretP == P4EST_DIM, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Need to give %d periodicities in -dm_p4est_brick_periodicity, gave %" PetscInt_FMT, P4EST_DIM, nretP); 3101dca8a05SBarry Smith PetscCheck(!flgB || nretB == 2 * P4EST_DIM, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Need to give %d bounds in -dm_p4est_brick_bounds, gave %" PetscInt_FMT, P4EST_DIM, nretP); 3110a96aa3bSJed Brown } 3120a96aa3bSJed Brown for (i = 0; i < P4EST_DIM; i++) { 3130a96aa3bSJed Brown P[i] = (P[i] ? DM_BOUNDARY_PERIODIC : DM_BOUNDARY_NONE); 3140a96aa3bSJed Brown periodic = (PetscBool)(P[i] || periodic); 3150a96aa3bSJed Brown if (!flgB) B[2 * i + 1] = N[i]; 3166858538eSMatthew G. Knepley if (P[i]) { 3174fb89dddSMatthew G. Knepley Lstart[i] = B[2 * i + 0]; 3184fb89dddSMatthew G. Knepley L[i] = B[2 * i + 1] - B[2 * i + 0]; 3196858538eSMatthew G. Knepley maxCell[i] = 1.1 * (L[i] / N[i]); 3206858538eSMatthew G. Knepley } 3210a96aa3bSJed Brown } 3229566063dSJacob Faibussowitsch PetscCall(DMFTopologyCreateBrick_pforest(dm, N, P, B, topo, useMorton)); 3234fb89dddSMatthew G. Knepley if (periodic) PetscCall(DMSetPeriodicity(dm, maxCell, Lstart, L)); 3240a96aa3bSJed Brown } else { 3254dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(topo)); 3260a96aa3bSJed Brown 3270a96aa3bSJed Brown (*topo)->refct = 1; 328792fecdfSBarry Smith PetscCallP4estReturn((*topo)->conn, p4est_connectivity_new_byname, (name)); 3290a96aa3bSJed Brown (*topo)->geom = NULL; 3301baa6e33SBarry Smith if (isMoebius) PetscCall(DMSetCoordinateDim(dm, 3)); 3310a96aa3bSJed Brown #if defined(P4_TO_P8) 3320a96aa3bSJed Brown if (isShell) { 3330a96aa3bSJed Brown PetscReal R2 = 1., R1 = .55; 3340a96aa3bSJed Brown 3350a96aa3bSJed Brown if (dm->setfromoptionscalled) { 3369566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_shell_outer_radius", &R2, NULL)); 3379566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_shell_inner_radius", &R1, NULL)); 3380a96aa3bSJed Brown } 339792fecdfSBarry Smith PetscCallP4estReturn((*topo)->geom, p8est_geometry_new_shell, ((*topo)->conn, R2, R1)); 3400a96aa3bSJed Brown } else if (isSphere) { 3410a96aa3bSJed Brown PetscReal R2 = 1., R1 = 0.191728, R0 = 0.039856; 3420a96aa3bSJed Brown 3430a96aa3bSJed Brown if (dm->setfromoptionscalled) { 3449566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_sphere_outer_radius", &R2, NULL)); 3459566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_sphere_inner_radius", &R1, NULL)); 3469566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_sphere_core_radius", &R0, NULL)); 3470a96aa3bSJed Brown } 348792fecdfSBarry Smith PetscCallP4estReturn((*topo)->geom, p8est_geometry_new_sphere, ((*topo)->conn, R2, R1, R0)); 3490a96aa3bSJed Brown } 3500a96aa3bSJed Brown #endif 3519566063dSJacob Faibussowitsch PetscCall(PforestConnectivityEnumerateFacets((*topo)->conn, &(*topo)->tree_face_to_uniq)); 3520a96aa3bSJed Brown } 3533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3540a96aa3bSJed Brown } 3550a96aa3bSJed Brown 3560a96aa3bSJed Brown #define DMConvert_plex_pforest _append_pforest(DMConvert_plex) 357d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvert_plex_pforest(DM dm, DMType newtype, DM *pforest) 358d71ae5a4SJacob Faibussowitsch { 3590a96aa3bSJed Brown MPI_Comm comm; 3600a96aa3bSJed Brown PetscBool isPlex; 3610a96aa3bSJed Brown PetscInt dim; 3620a96aa3bSJed Brown void *ctx; 3630a96aa3bSJed Brown 3640a96aa3bSJed Brown PetscFunctionBegin; 3650a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3660a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)dm); 3679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 36828b400f6SJacob Faibussowitsch PetscCheck(isPlex, comm, PETSC_ERR_ARG_WRONG, "Expected DM type %s, got %s", DMPLEX, ((PetscObject)dm)->type_name); 3699566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 37063a3b9bcSJacob Faibussowitsch PetscCheck(dim == P4EST_DIM, comm, PETSC_ERR_ARG_WRONG, "Expected DM dimension %d, got %" PetscInt_FMT, P4EST_DIM, dim); 3719566063dSJacob Faibussowitsch PetscCall(DMCreate(comm, pforest)); 3729566063dSJacob Faibussowitsch PetscCall(DMSetType(*pforest, DMPFOREST)); 3739566063dSJacob Faibussowitsch PetscCall(DMForestSetBaseDM(*pforest, dm)); 3749566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 3759566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*pforest, ctx)); 3769566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *pforest)); 3773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3780a96aa3bSJed Brown } 3790a96aa3bSJed Brown 3800a96aa3bSJed Brown #define DMForestDestroy_pforest _append_pforest(DMForestDestroy) 381d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestDestroy_pforest(DM dm) 382d71ae5a4SJacob Faibussowitsch { 3830a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 3840a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 3850a96aa3bSJed Brown 3860a96aa3bSJed Brown PetscFunctionBegin; 3870a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 388792fecdfSBarry Smith if (pforest->lnodes) PetscCallP4est(p4est_lnodes_destroy, (pforest->lnodes)); 3890a96aa3bSJed Brown pforest->lnodes = NULL; 390792fecdfSBarry Smith if (pforest->ghost) PetscCallP4est(p4est_ghost_destroy, (pforest->ghost)); 3910a96aa3bSJed Brown pforest->ghost = NULL; 392792fecdfSBarry Smith if (pforest->forest) PetscCallP4est(p4est_destroy, (pforest->forest)); 3930a96aa3bSJed Brown pforest->forest = NULL; 3949566063dSJacob Faibussowitsch PetscCall(DMFTopologyDestroy_pforest(&pforest->topo)); 3959566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->ghostName)); 3969566063dSJacob Faibussowitsch PetscCall(DMDestroy(&pforest->plex)); 3979566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pforest->pointAdaptToSelfSF)); 3989566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pforest->pointSelfToAdaptSF)); 3999566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointAdaptToSelfCids)); 4009566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointSelfToAdaptCids)); 4019566063dSJacob Faibussowitsch PetscCall(PetscFree(forest->data)); 4023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4030a96aa3bSJed Brown } 4040a96aa3bSJed Brown 4050a96aa3bSJed Brown #define DMForestTemplate_pforest _append_pforest(DMForestTemplate) 406d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestTemplate_pforest(DM dm, DM tdm) 407d71ae5a4SJacob Faibussowitsch { 4080a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 4090a96aa3bSJed Brown DM_Forest_pforest *tpforest = (DM_Forest_pforest *)((DM_Forest *)tdm->data)->data; 4100a96aa3bSJed Brown 4110a96aa3bSJed Brown PetscFunctionBegin; 4120a96aa3bSJed Brown if (pforest->topo) pforest->topo->refct++; 413*f4f49eeaSPierre Jolivet PetscCall(DMFTopologyDestroy_pforest(&tpforest->topo)); 4140a96aa3bSJed Brown tpforest->topo = pforest->topo; 4153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4160a96aa3bSJed Brown } 4170a96aa3bSJed Brown 4180a96aa3bSJed Brown #define DMPlexCreateConnectivity_pforest _append_pforest(DMPlexCreateConnectivity) 4190a96aa3bSJed Brown static PetscErrorCode DMPlexCreateConnectivity_pforest(DM, p4est_connectivity_t **, PetscInt **); 4200a96aa3bSJed Brown 4219371c9d4SSatish Balay typedef struct _PforestAdaptCtx { 4220a96aa3bSJed Brown PetscInt maxLevel; 4230a96aa3bSJed Brown PetscInt minLevel; 4240a96aa3bSJed Brown PetscInt currLevel; 4250a96aa3bSJed Brown PetscBool anyChange; 4269371c9d4SSatish Balay } PforestAdaptCtx; 4270a96aa3bSJed Brown 428d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_currlevel(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 429d71ae5a4SJacob Faibussowitsch { 4300a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4310a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4320a96aa3bSJed Brown PetscInt currLevel = ctx->currLevel; 4330a96aa3bSJed Brown 4340a96aa3bSJed Brown if (quadrants[0]->level <= minLevel) return 0; 4350a96aa3bSJed Brown return (int)((PetscInt)quadrants[0]->level == currLevel); 4360a96aa3bSJed Brown } 4370a96aa3bSJed Brown 438d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_uniform(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 439d71ae5a4SJacob Faibussowitsch { 4400a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4410a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4420a96aa3bSJed Brown 4430a96aa3bSJed Brown return (int)((PetscInt)quadrants[0]->level > minLevel); 4440a96aa3bSJed Brown } 4450a96aa3bSJed Brown 446d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_flag_any(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 447d71ae5a4SJacob Faibussowitsch { 4480a96aa3bSJed Brown PetscInt i; 4490a96aa3bSJed Brown PetscBool any = PETSC_FALSE; 4500a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4510a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4520a96aa3bSJed Brown 4530a96aa3bSJed Brown if (quadrants[0]->level <= minLevel) return 0; 4540a96aa3bSJed Brown for (i = 0; i < P4EST_CHILDREN; i++) { 4550a96aa3bSJed Brown if (quadrants[i]->p.user_int == DM_ADAPT_KEEP) { 4560a96aa3bSJed Brown any = PETSC_FALSE; 4570a96aa3bSJed Brown break; 4580a96aa3bSJed Brown } 4590a96aa3bSJed Brown if (quadrants[i]->p.user_int == DM_ADAPT_COARSEN) { 4600a96aa3bSJed Brown any = PETSC_TRUE; 4610a96aa3bSJed Brown break; 4620a96aa3bSJed Brown } 4630a96aa3bSJed Brown } 4640a96aa3bSJed Brown return any ? 1 : 0; 4650a96aa3bSJed Brown } 4660a96aa3bSJed Brown 467d71ae5a4SJacob Faibussowitsch static int pforest_coarsen_flag_all(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrants[]) 468d71ae5a4SJacob Faibussowitsch { 4690a96aa3bSJed Brown PetscInt i; 4700a96aa3bSJed Brown PetscBool all = PETSC_TRUE; 4710a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4720a96aa3bSJed Brown PetscInt minLevel = ctx->minLevel; 4730a96aa3bSJed Brown 4740a96aa3bSJed Brown if (quadrants[0]->level <= minLevel) return 0; 4750a96aa3bSJed Brown for (i = 0; i < P4EST_CHILDREN; i++) { 4760a96aa3bSJed Brown if (quadrants[i]->p.user_int != DM_ADAPT_COARSEN) { 4770a96aa3bSJed Brown all = PETSC_FALSE; 4780a96aa3bSJed Brown break; 4790a96aa3bSJed Brown } 4800a96aa3bSJed Brown } 4810a96aa3bSJed Brown return all ? 1 : 0; 4820a96aa3bSJed Brown } 4830a96aa3bSJed Brown 484d71ae5a4SJacob Faibussowitsch static void pforest_init_determine(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 485d71ae5a4SJacob Faibussowitsch { 4860a96aa3bSJed Brown quadrant->p.user_int = DM_ADAPT_DETERMINE; 4870a96aa3bSJed Brown } 4880a96aa3bSJed Brown 489d71ae5a4SJacob Faibussowitsch static int pforest_refine_uniform(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 490d71ae5a4SJacob Faibussowitsch { 4910a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 4920a96aa3bSJed Brown PetscInt maxLevel = ctx->maxLevel; 4930a96aa3bSJed Brown 4940a96aa3bSJed Brown return ((PetscInt)quadrant->level < maxLevel); 4950a96aa3bSJed Brown } 4960a96aa3bSJed Brown 497d71ae5a4SJacob Faibussowitsch static int pforest_refine_flag(p4est_t *p4est, p4est_topidx_t which_tree, p4est_quadrant_t *quadrant) 498d71ae5a4SJacob Faibussowitsch { 4990a96aa3bSJed Brown PforestAdaptCtx *ctx = (PforestAdaptCtx *)p4est->user_pointer; 5000a96aa3bSJed Brown PetscInt maxLevel = ctx->maxLevel; 5010a96aa3bSJed Brown 5020a96aa3bSJed Brown if ((PetscInt)quadrant->level >= maxLevel) return 0; 5030a96aa3bSJed Brown 5040a96aa3bSJed Brown return (quadrant->p.user_int == DM_ADAPT_REFINE); 5050a96aa3bSJed Brown } 5060a96aa3bSJed Brown 507d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestComputeLocalCellTransferSF_loop(p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, p4est_topidx_t flt, p4est_topidx_t llt, PetscInt *toFineLeavesCount, PetscInt *toLeaves, PetscSFNode *fromRoots, PetscInt *fromFineLeavesCount, PetscInt *fromLeaves, PetscSFNode *toRoots) 508d71ae5a4SJacob Faibussowitsch { 5090a96aa3bSJed Brown PetscMPIInt rank = p4estFrom->mpirank; 5100a96aa3bSJed Brown p4est_topidx_t t; 5110a96aa3bSJed Brown PetscInt toFineLeaves = 0, fromFineLeaves = 0; 5120a96aa3bSJed Brown 5130a96aa3bSJed Brown PetscFunctionBegin; 5145a96e07bSStefano Zampini /* -Wmaybe-uninitialized */ 5155a96e07bSStefano Zampini *toFineLeavesCount = 0; 5165a96e07bSStefano Zampini *fromFineLeavesCount = 0; 5170a96aa3bSJed Brown for (t = flt; t <= llt; t++) { /* count roots and leaves */ 5180a96aa3bSJed Brown p4est_tree_t *treeFrom = &(((p4est_tree_t *)p4estFrom->trees->array)[t]); 5190a96aa3bSJed Brown p4est_tree_t *treeTo = &(((p4est_tree_t *)p4estTo->trees->array)[t]); 5200a96aa3bSJed Brown p4est_quadrant_t *firstFrom = &treeFrom->first_desc; 5210a96aa3bSJed Brown p4est_quadrant_t *firstTo = &treeTo->first_desc; 5220a96aa3bSJed Brown PetscInt numFrom = (PetscInt)treeFrom->quadrants.elem_count; 5230a96aa3bSJed Brown PetscInt numTo = (PetscInt)treeTo->quadrants.elem_count; 5240a96aa3bSJed Brown p4est_quadrant_t *quadsFrom = (p4est_quadrant_t *)treeFrom->quadrants.array; 5250a96aa3bSJed Brown p4est_quadrant_t *quadsTo = (p4est_quadrant_t *)treeTo->quadrants.array; 5260a96aa3bSJed Brown PetscInt currentFrom, currentTo; 5270a96aa3bSJed Brown PetscInt treeOffsetFrom = (PetscInt)treeFrom->quadrants_offset; 5280a96aa3bSJed Brown PetscInt treeOffsetTo = (PetscInt)treeTo->quadrants_offset; 5290a96aa3bSJed Brown int comp; 5300a96aa3bSJed Brown 531792fecdfSBarry Smith PetscCallP4estReturn(comp, p4est_quadrant_is_equal, (firstFrom, firstTo)); 53228b400f6SJacob Faibussowitsch PetscCheck(comp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "non-matching partitions"); 5330a96aa3bSJed Brown 5340a96aa3bSJed Brown for (currentFrom = 0, currentTo = 0; currentFrom < numFrom && currentTo < numTo;) { 5350a96aa3bSJed Brown p4est_quadrant_t *quadFrom = &quadsFrom[currentFrom]; 5360a96aa3bSJed Brown p4est_quadrant_t *quadTo = &quadsTo[currentTo]; 5370a96aa3bSJed Brown 5380a96aa3bSJed Brown if (quadFrom->level == quadTo->level) { 5390a96aa3bSJed Brown if (toLeaves) { 5400a96aa3bSJed Brown toLeaves[toFineLeaves] = currentTo + treeOffsetTo + ToOffset; 5410a96aa3bSJed Brown fromRoots[toFineLeaves].rank = rank; 5420a96aa3bSJed Brown fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset; 5430a96aa3bSJed Brown } 5440a96aa3bSJed Brown toFineLeaves++; 5450a96aa3bSJed Brown currentFrom++; 5460a96aa3bSJed Brown currentTo++; 5470a96aa3bSJed Brown } else { 5480a96aa3bSJed Brown int fromIsAncestor; 5490a96aa3bSJed Brown 550792fecdfSBarry Smith PetscCallP4estReturn(fromIsAncestor, p4est_quadrant_is_ancestor, (quadFrom, quadTo)); 5510a96aa3bSJed Brown if (fromIsAncestor) { 5520a96aa3bSJed Brown p4est_quadrant_t lastDesc; 5530a96aa3bSJed Brown 5540a96aa3bSJed Brown if (toLeaves) { 5550a96aa3bSJed Brown toLeaves[toFineLeaves] = currentTo + treeOffsetTo + ToOffset; 5560a96aa3bSJed Brown fromRoots[toFineLeaves].rank = rank; 5570a96aa3bSJed Brown fromRoots[toFineLeaves].index = currentFrom + treeOffsetFrom + FromOffset; 5580a96aa3bSJed Brown } 5590a96aa3bSJed Brown toFineLeaves++; 5600a96aa3bSJed Brown currentTo++; 561792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_last_descendant, (quadFrom, &lastDesc, quadTo->level)); 562792fecdfSBarry Smith PetscCallP4estReturn(comp, p4est_quadrant_is_equal, (quadTo, &lastDesc)); 5630a96aa3bSJed Brown if (comp) currentFrom++; 5640a96aa3bSJed Brown } else { 5650a96aa3bSJed Brown p4est_quadrant_t lastDesc; 5660a96aa3bSJed Brown 5670a96aa3bSJed Brown if (fromLeaves) { 5680a96aa3bSJed Brown fromLeaves[fromFineLeaves] = currentFrom + treeOffsetFrom + FromOffset; 5690a96aa3bSJed Brown toRoots[fromFineLeaves].rank = rank; 5700a96aa3bSJed Brown toRoots[fromFineLeaves].index = currentTo + treeOffsetTo + ToOffset; 5710a96aa3bSJed Brown } 5720a96aa3bSJed Brown fromFineLeaves++; 5730a96aa3bSJed Brown currentFrom++; 574792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_last_descendant, (quadTo, &lastDesc, quadFrom->level)); 575792fecdfSBarry Smith PetscCallP4estReturn(comp, p4est_quadrant_is_equal, (quadFrom, &lastDesc)); 5760a96aa3bSJed Brown if (comp) currentTo++; 5770a96aa3bSJed Brown } 5780a96aa3bSJed Brown } 5790a96aa3bSJed Brown } 5800a96aa3bSJed Brown } 5810a96aa3bSJed Brown *toFineLeavesCount = toFineLeaves; 5820a96aa3bSJed Brown *fromFineLeavesCount = fromFineLeaves; 5833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5840a96aa3bSJed Brown } 5850a96aa3bSJed Brown 5860a96aa3bSJed Brown /* Compute the maximum level across all the trees */ 587d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetRefinementLevel(DM dm, PetscInt *lev) 588d71ae5a4SJacob Faibussowitsch { 5890a96aa3bSJed Brown p4est_topidx_t t, flt, llt; 5900a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 5910a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 5920a96aa3bSJed Brown PetscInt maxlevelloc = 0; 5930a96aa3bSJed Brown p4est_t *p4est; 5940a96aa3bSJed Brown 5950a96aa3bSJed Brown PetscFunctionBegin; 59628b400f6SJacob Faibussowitsch PetscCheck(pforest, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing DM_Forest_pforest"); 59728b400f6SJacob Faibussowitsch PetscCheck(pforest->forest, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Missing p4est_t"); 5980a96aa3bSJed Brown p4est = pforest->forest; 5990a96aa3bSJed Brown flt = p4est->first_local_tree; 6000a96aa3bSJed Brown llt = p4est->last_local_tree; 6010a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 6020a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4est->trees->array)[t]); 6030a96aa3bSJed Brown maxlevelloc = PetscMax((PetscInt)tree->maxlevel, maxlevelloc); 6040a96aa3bSJed Brown } 6051c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&maxlevelloc, lev, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 6063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6070a96aa3bSJed Brown } 6080a96aa3bSJed Brown 6090a96aa3bSJed Brown /* Puts identity in coarseToFine */ 6100a96aa3bSJed Brown /* assumes a matching partition */ 611d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestComputeLocalCellTransferSF(MPI_Comm comm, p4est_t *p4estFrom, PetscInt FromOffset, p4est_t *p4estTo, PetscInt ToOffset, PetscSF *fromCoarseToFine, PetscSF *toCoarseFromFine) 612d71ae5a4SJacob Faibussowitsch { 6130a96aa3bSJed Brown p4est_topidx_t flt, llt; 6140a96aa3bSJed Brown PetscSF fromCoarse, toCoarse; 6150a96aa3bSJed Brown PetscInt numRootsFrom, numRootsTo, numLeavesFrom, numLeavesTo; 6160a96aa3bSJed Brown PetscInt *fromLeaves = NULL, *toLeaves = NULL; 6170a96aa3bSJed Brown PetscSFNode *fromRoots = NULL, *toRoots = NULL; 6180a96aa3bSJed Brown 6190a96aa3bSJed Brown PetscFunctionBegin; 6200a96aa3bSJed Brown flt = p4estFrom->first_local_tree; 6210a96aa3bSJed Brown llt = p4estFrom->last_local_tree; 6229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &fromCoarse)); 62348a46eb9SPierre Jolivet if (toCoarseFromFine) PetscCall(PetscSFCreate(comm, &toCoarse)); 6240a96aa3bSJed Brown numRootsFrom = p4estFrom->local_num_quadrants + FromOffset; 6250a96aa3bSJed Brown numRootsTo = p4estTo->local_num_quadrants + ToOffset; 6269566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom, FromOffset, p4estTo, ToOffset, flt, llt, &numLeavesTo, NULL, NULL, &numLeavesFrom, NULL, NULL)); 6279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesTo, &toLeaves)); 6289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesTo, &fromRoots)); 6290a96aa3bSJed Brown if (toCoarseFromFine) { 6309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesFrom, &fromLeaves)); 6319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesFrom, &fromRoots)); 6320a96aa3bSJed Brown } 6339566063dSJacob Faibussowitsch PetscCall(DMPforestComputeLocalCellTransferSF_loop(p4estFrom, FromOffset, p4estTo, ToOffset, flt, llt, &numLeavesTo, toLeaves, fromRoots, &numLeavesFrom, fromLeaves, toRoots)); 6340a96aa3bSJed Brown if (!ToOffset && (numLeavesTo == numRootsTo)) { /* compress */ 6359566063dSJacob Faibussowitsch PetscCall(PetscFree(toLeaves)); 6369566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(fromCoarse, numRootsFrom, numLeavesTo, NULL, PETSC_OWN_POINTER, fromRoots, PETSC_OWN_POINTER)); 6371baa6e33SBarry Smith } else PetscCall(PetscSFSetGraph(fromCoarse, numRootsFrom, numLeavesTo, toLeaves, PETSC_OWN_POINTER, fromRoots, PETSC_OWN_POINTER)); 6380a96aa3bSJed Brown *fromCoarseToFine = fromCoarse; 6390a96aa3bSJed Brown if (toCoarseFromFine) { 6409566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(toCoarse, numRootsTo, numLeavesFrom, fromLeaves, PETSC_OWN_POINTER, toRoots, PETSC_OWN_POINTER)); 6410a96aa3bSJed Brown *toCoarseFromFine = toCoarse; 6420a96aa3bSJed Brown } 6433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6440a96aa3bSJed Brown } 6450a96aa3bSJed Brown 6460a96aa3bSJed Brown /* range of processes whose B sections overlap this ranks A section */ 647d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestComputeOverlappingRanks(PetscMPIInt size, PetscMPIInt rank, p4est_t *p4estA, p4est_t *p4estB, PetscInt *startB, PetscInt *endB) 648d71ae5a4SJacob Faibussowitsch { 649*f4f49eeaSPierre Jolivet p4est_quadrant_t *myCoarseStart = &p4estA->global_first_position[rank]; 650*f4f49eeaSPierre Jolivet p4est_quadrant_t *myCoarseEnd = &p4estA->global_first_position[rank + 1]; 6510a96aa3bSJed Brown p4est_quadrant_t *globalFirstB = p4estB->global_first_position; 6520a96aa3bSJed Brown 6530a96aa3bSJed Brown PetscFunctionBegin; 6540a96aa3bSJed Brown *startB = -1; 6550a96aa3bSJed Brown *endB = -1; 6560a96aa3bSJed Brown if (p4estA->local_num_quadrants) { 6570a96aa3bSJed Brown PetscInt lo, hi, guess; 6580a96aa3bSJed Brown /* binary search to find interval containing myCoarseStart */ 6590a96aa3bSJed Brown lo = 0; 6600a96aa3bSJed Brown hi = size; 6610a96aa3bSJed Brown guess = rank; 6620a96aa3bSJed Brown while (1) { 6630a96aa3bSJed Brown int startCompMy, myCompEnd; 6640a96aa3bSJed Brown 665792fecdfSBarry Smith PetscCallP4estReturn(startCompMy, p4est_quadrant_compare_piggy, (&globalFirstB[guess], myCoarseStart)); 666792fecdfSBarry Smith PetscCallP4estReturn(myCompEnd, p4est_quadrant_compare_piggy, (myCoarseStart, &globalFirstB[guess + 1])); 6670a96aa3bSJed Brown if (startCompMy <= 0 && myCompEnd < 0) { 6680a96aa3bSJed Brown *startB = guess; 6690a96aa3bSJed Brown break; 6700a96aa3bSJed Brown } else if (startCompMy > 0) { /* guess is to high */ 6710a96aa3bSJed Brown hi = guess; 6720a96aa3bSJed Brown } else { /* guess is to low */ 6730a96aa3bSJed Brown lo = guess + 1; 6740a96aa3bSJed Brown } 6750a96aa3bSJed Brown guess = lo + (hi - lo) / 2; 6760a96aa3bSJed Brown } 6770a96aa3bSJed Brown /* reset bounds, but not guess */ 6780a96aa3bSJed Brown lo = 0; 6790a96aa3bSJed Brown hi = size; 6800a96aa3bSJed Brown while (1) { 6810a96aa3bSJed Brown int startCompMy, myCompEnd; 6820a96aa3bSJed Brown 683792fecdfSBarry Smith PetscCallP4estReturn(startCompMy, p4est_quadrant_compare_piggy, (&globalFirstB[guess], myCoarseEnd)); 684792fecdfSBarry Smith PetscCallP4estReturn(myCompEnd, p4est_quadrant_compare_piggy, (myCoarseEnd, &globalFirstB[guess + 1])); 6850a96aa3bSJed Brown if (startCompMy < 0 && myCompEnd <= 0) { /* notice that the comparison operators are different from above */ 6860a96aa3bSJed Brown *endB = guess + 1; 6870a96aa3bSJed Brown break; 6880a96aa3bSJed Brown } else if (startCompMy >= 0) { /* guess is to high */ 6890a96aa3bSJed Brown hi = guess; 6900a96aa3bSJed Brown } else { /* guess is to low */ 6910a96aa3bSJed Brown lo = guess + 1; 6920a96aa3bSJed Brown } 6930a96aa3bSJed Brown guess = lo + (hi - lo) / 2; 6940a96aa3bSJed Brown } 6950a96aa3bSJed Brown } 6963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6970a96aa3bSJed Brown } 6980a96aa3bSJed Brown 6990a96aa3bSJed Brown static PetscErrorCode DMPforestGetPlex(DM, DM *); 7000a96aa3bSJed Brown 7010a96aa3bSJed Brown #define DMSetUp_pforest _append_pforest(DMSetUp) 702d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetUp_pforest(DM dm) 703d71ae5a4SJacob Faibussowitsch { 7040a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 7050a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 7060a96aa3bSJed Brown DM base, adaptFrom; 7070a96aa3bSJed Brown DMForestTopology topoName; 7080a96aa3bSJed Brown PetscSF preCoarseToFine = NULL, coarseToPreFine = NULL; 7090a96aa3bSJed Brown PforestAdaptCtx ctx; 7100a96aa3bSJed Brown 7110a96aa3bSJed Brown PetscFunctionBegin; 7120a96aa3bSJed Brown ctx.minLevel = PETSC_MAX_INT; 7130a96aa3bSJed Brown ctx.maxLevel = 0; 7140a96aa3bSJed Brown ctx.currLevel = 0; 7150a96aa3bSJed Brown ctx.anyChange = PETSC_FALSE; 7160a96aa3bSJed Brown /* sanity check */ 7179566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dm, &adaptFrom)); 7189566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 7199566063dSJacob Faibussowitsch PetscCall(DMForestGetTopology(dm, &topoName)); 7201dca8a05SBarry Smith PetscCheck(adaptFrom || base || topoName, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "A forest needs a topology, a base DM, or a DM to adapt from"); 7210a96aa3bSJed Brown 7220a96aa3bSJed Brown /* === Step 1: DMFTopology === */ 7230a96aa3bSJed Brown if (adaptFrom) { /* reference already created topology */ 7240a96aa3bSJed Brown PetscBool ispforest; 7250a96aa3bSJed Brown DM_Forest *aforest = (DM_Forest *)adaptFrom->data; 7260a96aa3bSJed Brown DM_Forest_pforest *apforest = (DM_Forest_pforest *)aforest->data; 7270a96aa3bSJed Brown 7289566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)adaptFrom, DMPFOREST, &ispforest)); 72928b400f6SJacob Faibussowitsch PetscCheck(ispforest, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_NOTSAMETYPE, "Trying to adapt from %s, which is not %s", ((PetscObject)adaptFrom)->type_name, DMPFOREST); 73028b400f6SJacob Faibussowitsch PetscCheck(apforest->topo, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "The pre-adaptation forest must have a topology"); 7319566063dSJacob Faibussowitsch PetscCall(DMSetUp(adaptFrom)); 7329566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 7339566063dSJacob Faibussowitsch PetscCall(DMForestGetTopology(dm, &topoName)); 7340a96aa3bSJed Brown } else if (base) { /* construct a connectivity from base */ 7350a96aa3bSJed Brown PetscBool isPlex, isDA; 7360a96aa3bSJed Brown 7379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)base, &topoName)); 7389566063dSJacob Faibussowitsch PetscCall(DMForestSetTopology(dm, topoName)); 7399566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)base, DMPLEX, &isPlex)); 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)base, DMDA, &isDA)); 7410a96aa3bSJed Brown if (isPlex) { 7420a96aa3bSJed Brown MPI_Comm comm = PetscObjectComm((PetscObject)dm); 7430a96aa3bSJed Brown PetscInt depth; 7440a96aa3bSJed Brown PetscMPIInt size; 7450a96aa3bSJed Brown p4est_connectivity_t *conn = NULL; 7460a96aa3bSJed Brown DMFTopology_pforest *topo; 7470a96aa3bSJed Brown PetscInt *tree_face_to_uniq = NULL; 7480a96aa3bSJed Brown 7499566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(base, &depth)); 7500a96aa3bSJed Brown if (depth == 1) { 7510a96aa3bSJed Brown DM connDM; 7520a96aa3bSJed Brown 7539566063dSJacob Faibussowitsch PetscCall(DMPlexInterpolate(base, &connDM)); 7540a96aa3bSJed Brown base = connDM; 7559566063dSJacob Faibussowitsch PetscCall(DMForestSetBaseDM(dm, base)); 7569566063dSJacob Faibussowitsch PetscCall(DMDestroy(&connDM)); 75763a3b9bcSJacob Faibussowitsch } else PetscCheck(depth == P4EST_DIM, comm, PETSC_ERR_ARG_WRONG, "Base plex is neither interpolated nor uninterpolated? depth %" PetscInt_FMT ", expected 2 or %d", depth, P4EST_DIM + 1); 7589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 7590a96aa3bSJed Brown if (size > 1) { 7600a96aa3bSJed Brown DM dmRedundant; 7610a96aa3bSJed Brown PetscSF sf; 7620a96aa3bSJed Brown 7639566063dSJacob Faibussowitsch PetscCall(DMPlexGetRedundantDM(base, &sf, &dmRedundant)); 76428b400f6SJacob Faibussowitsch PetscCheck(dmRedundant, comm, PETSC_ERR_PLIB, "Could not create redundant DM"); 7659566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dmRedundant, "_base_migration_sf", (PetscObject)sf)); 7669566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 7670a96aa3bSJed Brown base = dmRedundant; 7689566063dSJacob Faibussowitsch PetscCall(DMForestSetBaseDM(dm, base)); 7699566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRedundant)); 7700a96aa3bSJed Brown } 7719566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(base, NULL, "-dm_p4est_base_view")); 7729566063dSJacob Faibussowitsch PetscCall(DMPlexCreateConnectivity_pforest(base, &conn, &tree_face_to_uniq)); 7734dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&topo)); 7740a96aa3bSJed Brown topo->refct = 1; 7750a96aa3bSJed Brown topo->conn = conn; 7760a96aa3bSJed Brown topo->geom = NULL; 7770a96aa3bSJed Brown { 7780a96aa3bSJed Brown PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *); 7790a96aa3bSJed Brown void *mapCtx; 7800a96aa3bSJed Brown 7819566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseCoordinateMapping(dm, &map, &mapCtx)); 7820a96aa3bSJed Brown if (map) { 7830a96aa3bSJed Brown DM_Forest_geometry_pforest *geom_pforest; 7840a96aa3bSJed Brown p4est_geometry_t *geom; 7850a96aa3bSJed Brown 7869566063dSJacob Faibussowitsch PetscCall(PetscNew(&geom_pforest)); 7879566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &geom_pforest->coordDim)); 7880a96aa3bSJed Brown geom_pforest->map = map; 7890a96aa3bSJed Brown geom_pforest->mapCtx = mapCtx; 790792fecdfSBarry Smith PetscCallP4estReturn(geom_pforest->inner, p4est_geometry_new_connectivity, (conn)); 7919566063dSJacob Faibussowitsch PetscCall(PetscNew(&geom)); 7920a96aa3bSJed Brown geom->name = topoName; 7930a96aa3bSJed Brown geom->user = geom_pforest; 7940a96aa3bSJed Brown geom->X = GeometryMapping_pforest; 7950a96aa3bSJed Brown geom->destroy = GeometryDestroy_pforest; 7960a96aa3bSJed Brown topo->geom = geom; 7970a96aa3bSJed Brown } 7980a96aa3bSJed Brown } 7990a96aa3bSJed Brown topo->tree_face_to_uniq = tree_face_to_uniq; 8000a96aa3bSJed Brown pforest->topo = topo; 80128b400f6SJacob Faibussowitsch } else PetscCheck(!isDA, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Not implemented yet"); 8020a96aa3bSJed Brown #if 0 8030a96aa3bSJed Brown PetscInt N[3], P[3]; 8040a96aa3bSJed Brown 8050a96aa3bSJed Brown /* get the sizes, periodicities */ 8060a96aa3bSJed Brown /* ... */ 8070a96aa3bSJed Brown /* don't use Morton order */ 8089566063dSJacob Faibussowitsch PetscCall(DMFTopologyCreateBrick_pforest(dm,N,P,&pforest->topo,PETSC_FALSE)); 8090a96aa3bSJed Brown #endif 8100a96aa3bSJed Brown { 8110a96aa3bSJed Brown PetscInt numLabels, l; 8120a96aa3bSJed Brown 8139566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(base, &numLabels)); 8140a96aa3bSJed Brown for (l = 0; l < numLabels; l++) { 8150a96aa3bSJed Brown PetscBool isDepth, isGhost, isVTK, isDim, isCellType; 8160a96aa3bSJed Brown DMLabel label, labelNew; 8170a96aa3bSJed Brown PetscInt defVal; 8180a96aa3bSJed Brown const char *name; 8190a96aa3bSJed Brown 8209566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(base, l, &name)); 8219566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(base, l, &label)); 8229566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 8230a96aa3bSJed Brown if (isDepth) continue; 8249566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &isDim)); 8250a96aa3bSJed Brown if (isDim) continue; 8269566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &isCellType)); 8270a96aa3bSJed Brown if (isCellType) continue; 8289566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "ghost", &isGhost)); 8290a96aa3bSJed Brown if (isGhost) continue; 8309566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "vtk", &isVTK)); 8310a96aa3bSJed Brown if (isVTK) continue; 8329566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 8339566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &labelNew)); 8349566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defVal)); 8359566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(labelNew, defVal)); 8360a96aa3bSJed Brown } 8370a96aa3bSJed Brown /* map dm points (internal plex) to base 8380a96aa3bSJed Brown we currently create the subpoint_map for the entire hierarchy, starting from the finest forest 8390a96aa3bSJed Brown and propagating back to the coarsest 8400a96aa3bSJed Brown This is not an optimal approach, since we need the map only on the coarsest level 8410a96aa3bSJed Brown during DMForestTransferVecFromBase */ 8429566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &l)); 84348a46eb9SPierre Jolivet if (!l) PetscCall(DMCreateLabel(dm, "_forest_base_subpoint_map")); 8440a96aa3bSJed Brown } 8450a96aa3bSJed Brown } else { /* construct from topology name */ 8460a96aa3bSJed Brown DMFTopology_pforest *topo; 8470a96aa3bSJed Brown 8489566063dSJacob Faibussowitsch PetscCall(DMFTopologyCreate_pforest(dm, topoName, &topo)); 8490a96aa3bSJed Brown pforest->topo = topo; 8500a96aa3bSJed Brown /* TODO: construct base? */ 8510a96aa3bSJed Brown } 8520a96aa3bSJed Brown 8530a96aa3bSJed Brown /* === Step 2: get the leaves of the forest === */ 8540a96aa3bSJed Brown if (adaptFrom) { /* start with the old forest */ 8550a96aa3bSJed Brown DMLabel adaptLabel; 8560a96aa3bSJed Brown PetscInt defaultValue; 8570a96aa3bSJed Brown PetscInt numValues, numValuesGlobal, cLocalStart, count; 8580a96aa3bSJed Brown DM_Forest *aforest = (DM_Forest *)adaptFrom->data; 8590a96aa3bSJed Brown DM_Forest_pforest *apforest = (DM_Forest_pforest *)aforest->data; 8600a96aa3bSJed Brown PetscBool computeAdaptSF; 8610a96aa3bSJed Brown p4est_topidx_t flt, llt, t; 8620a96aa3bSJed Brown 8630a96aa3bSJed Brown flt = apforest->forest->first_local_tree; 8640a96aa3bSJed Brown llt = apforest->forest->last_local_tree; 8650a96aa3bSJed Brown cLocalStart = apforest->cLocalStart; 8669566063dSJacob Faibussowitsch PetscCall(DMForestGetComputeAdaptivitySF(dm, &computeAdaptSF)); 867792fecdfSBarry Smith PetscCallP4estReturn(pforest->forest, p4est_copy, (apforest->forest, 0)); /* 0 indicates no data copying */ 8689566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityLabel(dm, &adaptLabel)); 8690a96aa3bSJed Brown if (adaptLabel) { 8700a96aa3bSJed Brown /* apply the refinement/coarsening by flags, plus minimum/maximum refinement */ 8719566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(adaptLabel, &numValues)); 872712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&numValues, &numValuesGlobal, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)adaptFrom))); 8739566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(adaptLabel, &defaultValue)); 8740a96aa3bSJed Brown if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN_LAST) { /* uniform coarsen of the last level only (equivalent to DM_ADAPT_COARSEN for conforming grids) */ 8759566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &ctx.minLevel)); 8769566063dSJacob Faibussowitsch PetscCall(DMPforestGetRefinementLevel(dm, &ctx.currLevel)); 8770a96aa3bSJed Brown pforest->forest->user_pointer = (void *)&ctx; 878792fecdfSBarry Smith PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_currlevel, NULL)); 8790a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 880792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 8810a96aa3bSJed Brown /* we will have to change the offset after we compute the overlap */ 88248a46eb9SPierre Jolivet if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), pforest->forest, 0, apforest->forest, apforest->cLocalStart, &coarseToPreFine, NULL)); 8830a96aa3bSJed Brown } else if (!numValuesGlobal && defaultValue == DM_ADAPT_COARSEN) { /* uniform coarsen */ 8849566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &ctx.minLevel)); 8850a96aa3bSJed Brown pforest->forest->user_pointer = (void *)&ctx; 886792fecdfSBarry Smith PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_uniform, NULL)); 8870a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 888792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 8890a96aa3bSJed Brown /* we will have to change the offset after we compute the overlap */ 89048a46eb9SPierre Jolivet if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), pforest->forest, 0, apforest->forest, apforest->cLocalStart, &coarseToPreFine, NULL)); 8910a96aa3bSJed Brown } else if (!numValuesGlobal && defaultValue == DM_ADAPT_REFINE) { /* uniform refine */ 8929566063dSJacob Faibussowitsch PetscCall(DMForestGetMaximumRefinement(dm, &ctx.maxLevel)); 8930a96aa3bSJed Brown pforest->forest->user_pointer = (void *)&ctx; 894792fecdfSBarry Smith PetscCallP4est(p4est_refine, (pforest->forest, 0, pforest_refine_uniform, NULL)); 8950a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 896792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 8970a96aa3bSJed Brown /* we will have to change the offset after we compute the overlap */ 89848a46eb9SPierre Jolivet if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), apforest->forest, apforest->cLocalStart, pforest->forest, 0, &preCoarseToFine, NULL)); 8990a96aa3bSJed Brown } else if (numValuesGlobal) { 9000a96aa3bSJed Brown p4est_t *p4est = pforest->forest; 9010a96aa3bSJed Brown PetscInt *cellFlags; 9020a96aa3bSJed Brown DMForestAdaptivityStrategy strategy; 9030a96aa3bSJed Brown PetscSF cellSF; 9040a96aa3bSJed Brown PetscInt c, cStart, cEnd; 9050a96aa3bSJed Brown PetscBool adaptAny; 9060a96aa3bSJed Brown 9079566063dSJacob Faibussowitsch PetscCall(DMForestGetMaximumRefinement(dm, &ctx.maxLevel)); 9089566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &ctx.minLevel)); 9099566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityStrategy(dm, &strategy)); 9109566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(strategy, "any", 3, &adaptAny)); 9119566063dSJacob Faibussowitsch PetscCall(DMForestGetCellChart(adaptFrom, &cStart, &cEnd)); 9129566063dSJacob Faibussowitsch PetscCall(DMForestGetCellSF(adaptFrom, &cellSF)); 9139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEnd - cStart, &cellFlags)); 9149566063dSJacob Faibussowitsch for (c = cStart; c < cEnd; c++) PetscCall(DMLabelGetValue(adaptLabel, c, &cellFlags[c - cStart])); 9150a96aa3bSJed Brown if (cellSF) { 9160a96aa3bSJed Brown if (adaptAny) { 9179566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MAX)); 9189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MAX)); 9190a96aa3bSJed Brown } else { 9209566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MIN)); 9219566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(cellSF, MPIU_INT, cellFlags, cellFlags, MPI_MIN)); 9220a96aa3bSJed Brown } 9230a96aa3bSJed Brown } 9240a96aa3bSJed Brown for (t = flt, count = cLocalStart; t <= llt; t++) { 9250a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4est->trees->array)[t]); 9260a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count, i; 9270a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 9280a96aa3bSJed Brown 9290a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 9300a96aa3bSJed Brown p4est_quadrant_t *q = &quads[i]; 9310a96aa3bSJed Brown q->p.user_int = cellFlags[count++]; 9320a96aa3bSJed Brown } 9330a96aa3bSJed Brown } 9349566063dSJacob Faibussowitsch PetscCall(PetscFree(cellFlags)); 9350a96aa3bSJed Brown 9360a96aa3bSJed Brown pforest->forest->user_pointer = (void *)&ctx; 937792fecdfSBarry Smith if (adaptAny) PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_flag_any, pforest_init_determine)); 938792fecdfSBarry Smith else PetscCallP4est(p4est_coarsen, (pforest->forest, 0, pforest_coarsen_flag_all, pforest_init_determine)); 939792fecdfSBarry Smith PetscCallP4est(p4est_refine, (pforest->forest, 0, pforest_refine_flag, NULL)); 9400a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 941792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 94248a46eb9SPierre Jolivet if (computeAdaptSF) PetscCall(DMPforestComputeLocalCellTransferSF(PetscObjectComm((PetscObject)dm), apforest->forest, apforest->cLocalStart, pforest->forest, 0, &preCoarseToFine, &coarseToPreFine)); 9430a96aa3bSJed Brown } 9440a96aa3bSJed Brown for (t = flt, count = cLocalStart; t <= llt; t++) { 9450a96aa3bSJed Brown p4est_tree_t *atree = &(((p4est_tree_t *)apforest->forest->trees->array)[t]); 9460a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)pforest->forest->trees->array)[t]); 9470a96aa3bSJed Brown PetscInt anumQuads = (PetscInt)atree->quadrants.elem_count, i; 9480a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 9490a96aa3bSJed Brown p4est_quadrant_t *aquads = (p4est_quadrant_t *)atree->quadrants.array; 9500a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 9510a96aa3bSJed Brown 9520a96aa3bSJed Brown if (anumQuads != numQuads) { 9530a96aa3bSJed Brown ctx.anyChange = PETSC_TRUE; 9540a96aa3bSJed Brown } else { 9550a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 9560a96aa3bSJed Brown p4est_quadrant_t *aq = &aquads[i]; 9570a96aa3bSJed Brown p4est_quadrant_t *q = &quads[i]; 9580a96aa3bSJed Brown 9590a96aa3bSJed Brown if (aq->level != q->level) { 9600a96aa3bSJed Brown ctx.anyChange = PETSC_TRUE; 9610a96aa3bSJed Brown break; 9620a96aa3bSJed Brown } 9630a96aa3bSJed Brown } 9640a96aa3bSJed Brown } 965ad540459SPierre Jolivet if (ctx.anyChange) break; 9660a96aa3bSJed Brown } 9670a96aa3bSJed Brown } 9680a96aa3bSJed Brown { 9690a96aa3bSJed Brown PetscInt numLabels, l; 9700a96aa3bSJed Brown 9719566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(adaptFrom, &numLabels)); 9720a96aa3bSJed Brown for (l = 0; l < numLabels; l++) { 9730a96aa3bSJed Brown PetscBool isDepth, isCellType, isGhost, isVTK; 9740a96aa3bSJed Brown DMLabel label, labelNew; 9750a96aa3bSJed Brown PetscInt defVal; 9760a96aa3bSJed Brown const char *name; 9770a96aa3bSJed Brown 9789566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(adaptFrom, l, &name)); 9799566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(adaptFrom, l, &label)); 9809566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 9810a96aa3bSJed Brown if (isDepth) continue; 9829566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &isCellType)); 9830a96aa3bSJed Brown if (isCellType) continue; 9849566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "ghost", &isGhost)); 9850a96aa3bSJed Brown if (isGhost) continue; 9869566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "vtk", &isVTK)); 9870a96aa3bSJed Brown if (isVTK) continue; 9889566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 9899566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &labelNew)); 9909566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defVal)); 9919566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(labelNew, defVal)); 9920a96aa3bSJed Brown } 9930a96aa3bSJed Brown } 9940a96aa3bSJed Brown } else { /* initial */ 9950a96aa3bSJed Brown PetscInt initLevel, minLevel; 99666c0a4b5SToby Isaac #if defined(PETSC_HAVE_MPIUNI) 99766c0a4b5SToby Isaac sc_MPI_Comm comm = sc_MPI_COMM_WORLD; 99866c0a4b5SToby Isaac #else 99966c0a4b5SToby Isaac MPI_Comm comm = PetscObjectComm((PetscObject)dm); 100066c0a4b5SToby Isaac #endif 10010a96aa3bSJed Brown 10029566063dSJacob Faibussowitsch PetscCall(DMForestGetInitialRefinement(dm, &initLevel)); 10039566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &minLevel)); 10049371c9d4SSatish Balay PetscCallP4estReturn(pforest->forest, p4est_new_ext, 10059371c9d4SSatish Balay (comm, pforest->topo->conn, 0, /* minimum number of quadrants per processor */ 10060a96aa3bSJed Brown initLevel, /* level of refinement */ 10070a96aa3bSJed Brown 1, /* uniform refinement */ 10080a96aa3bSJed Brown 0, /* we don't allocate any per quadrant data */ 10090a96aa3bSJed Brown NULL, /* there is no special quadrant initialization */ 10100a96aa3bSJed Brown (void *)dm)); /* this dm is the user context */ 10110a96aa3bSJed Brown 10120a96aa3bSJed Brown if (initLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE; 10130a96aa3bSJed Brown if (dm->setfromoptionscalled) { 10140a96aa3bSJed Brown PetscBool flgPattern, flgFractal; 10150a96aa3bSJed Brown PetscInt corner = 0; 10160a96aa3bSJed Brown PetscInt corners[P4EST_CHILDREN], ncorner = P4EST_CHILDREN; 10170a96aa3bSJed Brown PetscReal likelihood = 1. / P4EST_DIM; 10180a96aa3bSJed Brown PetscInt pattern; 10190a96aa3bSJed Brown const char *prefix; 10200a96aa3bSJed Brown 10219566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 10229566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEList(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_pattern", DMRefinePatternName, PATTERN_COUNT, &pattern, &flgPattern)); 10239566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_corner", &corner, NULL)); 10249566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_fractal_corners", corners, &ncorner, &flgFractal)); 10259566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject)dm)->options, prefix, "-dm_p4est_refine_hash_likelihood", &likelihood, NULL)); 10260a96aa3bSJed Brown 10270a96aa3bSJed Brown if (flgPattern) { 10280a96aa3bSJed Brown DMRefinePatternCtx *ctx; 10290a96aa3bSJed Brown PetscInt maxLevel; 10300a96aa3bSJed Brown 10319566063dSJacob Faibussowitsch PetscCall(DMForestGetMaximumRefinement(dm, &maxLevel)); 10324dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&ctx)); 10330a96aa3bSJed Brown ctx->maxLevel = PetscMin(maxLevel, P4EST_QMAXLEVEL); 10340a96aa3bSJed Brown if (initLevel + ctx->maxLevel > minLevel) pforest->coarsen_hierarchy = PETSC_TRUE; 10350a96aa3bSJed Brown switch (pattern) { 10360a96aa3bSJed Brown case PATTERN_HASH: 10370a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Hash; 10380a96aa3bSJed Brown ctx->hashLikelihood = likelihood; 10390a96aa3bSJed Brown break; 10400a96aa3bSJed Brown case PATTERN_CORNER: 10410a96aa3bSJed Brown ctx->corner = corner; 10420a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Corner; 10430a96aa3bSJed Brown break; 1044d71ae5a4SJacob Faibussowitsch case PATTERN_CENTER: 1045d71ae5a4SJacob Faibussowitsch ctx->refine_fn = DMRefinePattern_Center; 1046d71ae5a4SJacob Faibussowitsch break; 10470a96aa3bSJed Brown case PATTERN_FRACTAL: 10480a96aa3bSJed Brown if (flgFractal) { 10490a96aa3bSJed Brown PetscInt i; 10500a96aa3bSJed Brown 10510a96aa3bSJed Brown for (i = 0; i < ncorner; i++) ctx->fractal[corners[i]] = PETSC_TRUE; 10520a96aa3bSJed Brown } else { 10530a96aa3bSJed Brown #if !defined(P4_TO_P8) 10540a96aa3bSJed Brown ctx->fractal[0] = ctx->fractal[1] = ctx->fractal[2] = PETSC_TRUE; 10550a96aa3bSJed Brown #else 10560a96aa3bSJed Brown ctx->fractal[0] = ctx->fractal[3] = ctx->fractal[5] = ctx->fractal[6] = PETSC_TRUE; 10570a96aa3bSJed Brown #endif 10580a96aa3bSJed Brown } 10590a96aa3bSJed Brown ctx->refine_fn = DMRefinePattern_Fractal; 10600a96aa3bSJed Brown break; 1061d71ae5a4SJacob Faibussowitsch default: 1062d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Not a valid refinement pattern"); 10630a96aa3bSJed Brown } 10640a96aa3bSJed Brown 10650a96aa3bSJed Brown pforest->forest->user_pointer = (void *)ctx; 1066792fecdfSBarry Smith PetscCallP4est(p4est_refine, (pforest->forest, 1, ctx->refine_fn, NULL)); 1067792fecdfSBarry Smith PetscCallP4est(p4est_balance, (pforest->forest, P4EST_CONNECT_FULL, NULL)); 10689566063dSJacob Faibussowitsch PetscCall(PetscFree(ctx)); 10690a96aa3bSJed Brown pforest->forest->user_pointer = (void *)dm; 10700a96aa3bSJed Brown } 10710a96aa3bSJed Brown } 10720a96aa3bSJed Brown } 10730a96aa3bSJed Brown if (pforest->coarsen_hierarchy) { 10740a96aa3bSJed Brown PetscInt initLevel, currLevel, minLevel; 10750a96aa3bSJed Brown 10769566063dSJacob Faibussowitsch PetscCall(DMPforestGetRefinementLevel(dm, &currLevel)); 10779566063dSJacob Faibussowitsch PetscCall(DMForestGetInitialRefinement(dm, &initLevel)); 10789566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &minLevel)); 1079156acca6SStefano Zampini /* allow using PCMG and SNESFAS */ 1080156acca6SStefano Zampini PetscCall(DMSetRefineLevel(dm, currLevel - minLevel)); 10810a96aa3bSJed Brown if (currLevel > minLevel) { 10820a96aa3bSJed Brown DM_Forest_pforest *coarse_pforest; 10830a96aa3bSJed Brown DMLabel coarsen; 10840a96aa3bSJed Brown DM coarseDM; 10850a96aa3bSJed Brown 10869566063dSJacob Faibussowitsch PetscCall(DMForestTemplate(dm, MPI_COMM_NULL, &coarseDM)); 10879566063dSJacob Faibussowitsch PetscCall(DMForestSetAdaptivityPurpose(coarseDM, DM_ADAPT_COARSEN)); 10889566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "coarsen", &coarsen)); 10899566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(coarsen, DM_ADAPT_COARSEN)); 10909566063dSJacob Faibussowitsch PetscCall(DMForestSetAdaptivityLabel(coarseDM, coarsen)); 10919566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&coarsen)); 10929566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, coarseDM)); 10939566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)coarseDM)); 10940a96aa3bSJed Brown initLevel = currLevel == initLevel ? initLevel - 1 : initLevel; 10959566063dSJacob Faibussowitsch PetscCall(DMForestSetInitialRefinement(coarseDM, initLevel)); 10969566063dSJacob Faibussowitsch PetscCall(DMForestSetMinimumRefinement(coarseDM, minLevel)); 10970a96aa3bSJed Brown coarse_pforest = (DM_Forest_pforest *)((DM_Forest *)coarseDM->data)->data; 10980a96aa3bSJed Brown coarse_pforest->coarsen_hierarchy = PETSC_TRUE; 10990a96aa3bSJed Brown } 11000a96aa3bSJed Brown } 11010a96aa3bSJed Brown 11020a96aa3bSJed Brown { /* repartitioning and overlap */ 11030a96aa3bSJed Brown PetscMPIInt size, rank; 11040a96aa3bSJed Brown 11059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 11069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 1107217f96c1SStefano Zampini if (size > 1 && (pforest->partition_for_coarsening || forest->cellWeights || forest->weightCapacity != 1. || forest->weightsFactor != 1.)) { 11080a96aa3bSJed Brown PetscBool copyForest = PETSC_FALSE; 11090a96aa3bSJed Brown p4est_t *forest_copy = NULL; 11100a96aa3bSJed Brown p4est_gloidx_t shipped = 0; 11110a96aa3bSJed Brown 11120a96aa3bSJed Brown if (preCoarseToFine || coarseToPreFine) copyForest = PETSC_TRUE; 1113792fecdfSBarry Smith if (copyForest) PetscCallP4estReturn(forest_copy, p4est_copy, (pforest->forest, 0)); 11140a96aa3bSJed Brown 11150a96aa3bSJed Brown if (!forest->cellWeights && forest->weightCapacity == 1. && forest->weightsFactor == 1.) { 1116792fecdfSBarry Smith PetscCallP4estReturn(shipped, p4est_partition_ext, (pforest->forest, (int)pforest->partition_for_coarsening, NULL)); 11170a96aa3bSJed Brown } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Non-uniform partition cases not implemented yet"); 11180a96aa3bSJed Brown if (shipped) ctx.anyChange = PETSC_TRUE; 11190a96aa3bSJed Brown if (forest_copy) { 11200a96aa3bSJed Brown if (preCoarseToFine || coarseToPreFine) { 11210a96aa3bSJed Brown PetscSF repartSF; /* repartSF has roots in the old partition */ 11220a96aa3bSJed Brown PetscInt pStart = -1, pEnd = -1, p; 11230a96aa3bSJed Brown PetscInt numRoots, numLeaves; 11240a96aa3bSJed Brown PetscSFNode *repartRoots; 11250a96aa3bSJed Brown p4est_gloidx_t postStart = pforest->forest->global_first_quadrant[rank]; 11260a96aa3bSJed Brown p4est_gloidx_t postEnd = pforest->forest->global_first_quadrant[rank + 1]; 11270a96aa3bSJed Brown p4est_gloidx_t partOffset = postStart; 11280a96aa3bSJed Brown 11290a96aa3bSJed Brown numRoots = (PetscInt)(forest_copy->global_first_quadrant[rank + 1] - forest_copy->global_first_quadrant[rank]); 11300a96aa3bSJed Brown numLeaves = (PetscInt)(postEnd - postStart); 11319566063dSJacob Faibussowitsch PetscCall(DMPforestComputeOverlappingRanks(size, rank, pforest->forest, forest_copy, &pStart, &pEnd)); 11329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((PetscInt)pforest->forest->local_num_quadrants, &repartRoots)); 11330a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 11340a96aa3bSJed Brown p4est_gloidx_t preStart = forest_copy->global_first_quadrant[p]; 11350a96aa3bSJed Brown p4est_gloidx_t preEnd = forest_copy->global_first_quadrant[p + 1]; 11360a96aa3bSJed Brown PetscInt q; 11370a96aa3bSJed Brown 11380a96aa3bSJed Brown if (preEnd == preStart) continue; 113908401ef6SPierre Jolivet PetscCheck(preStart <= postStart, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Bad partition overlap computation"); 11400a96aa3bSJed Brown preEnd = preEnd > postEnd ? postEnd : preEnd; 11410a96aa3bSJed Brown for (q = partOffset; q < preEnd; q++) { 11420a96aa3bSJed Brown repartRoots[q - postStart].rank = p; 11430a96aa3bSJed Brown repartRoots[q - postStart].index = partOffset - preStart; 11440a96aa3bSJed Brown } 11450a96aa3bSJed Brown partOffset = preEnd; 11460a96aa3bSJed Brown } 11479566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &repartSF)); 11489566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(repartSF, numRoots, numLeaves, NULL, PETSC_OWN_POINTER, repartRoots, PETSC_OWN_POINTER)); 11499566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(repartSF)); 11500a96aa3bSJed Brown if (preCoarseToFine) { 11510a96aa3bSJed Brown PetscSF repartSFembed, preCoarseToFineNew; 11520a96aa3bSJed Brown PetscInt nleaves; 11530a96aa3bSJed Brown const PetscInt *leaves; 11540a96aa3bSJed Brown 11559566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(preCoarseToFine)); 11569566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(preCoarseToFine, NULL, &nleaves, &leaves, NULL)); 11570a96aa3bSJed Brown if (leaves) { 11589566063dSJacob Faibussowitsch PetscCall(PetscSFCreateEmbeddedRootSF(repartSF, nleaves, leaves, &repartSFembed)); 11590a96aa3bSJed Brown } else { 11600a96aa3bSJed Brown repartSFembed = repartSF; 11619566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)repartSFembed)); 11620a96aa3bSJed Brown } 11639566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(preCoarseToFine, repartSFembed, &preCoarseToFineNew)); 11649566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&preCoarseToFine)); 11659566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&repartSFembed)); 11660a96aa3bSJed Brown preCoarseToFine = preCoarseToFineNew; 11670a96aa3bSJed Brown } 11680a96aa3bSJed Brown if (coarseToPreFine) { 11690a96aa3bSJed Brown PetscSF repartSFinv, coarseToPreFineNew; 11700a96aa3bSJed Brown 11719566063dSJacob Faibussowitsch PetscCall(PetscSFCreateInverseSF(repartSF, &repartSFinv)); 11729566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(repartSFinv, coarseToPreFine, &coarseToPreFineNew)); 11739566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseToPreFine)); 11749566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&repartSFinv)); 11750a96aa3bSJed Brown coarseToPreFine = coarseToPreFineNew; 11760a96aa3bSJed Brown } 11779566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&repartSF)); 11780a96aa3bSJed Brown } 1179792fecdfSBarry Smith PetscCallP4est(p4est_destroy, (forest_copy)); 11800a96aa3bSJed Brown } 11810a96aa3bSJed Brown } 11820a96aa3bSJed Brown if (size > 1) { 11830a96aa3bSJed Brown PetscInt overlap; 11840a96aa3bSJed Brown 11859566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm, &overlap)); 11860a96aa3bSJed Brown 11870a96aa3bSJed Brown if (adaptFrom) { 11880a96aa3bSJed Brown PetscInt aoverlap; 11890a96aa3bSJed Brown 11909566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(adaptFrom, &aoverlap)); 1191ad540459SPierre Jolivet if (aoverlap != overlap) ctx.anyChange = PETSC_TRUE; 11920a96aa3bSJed Brown } 11930a96aa3bSJed Brown 11940a96aa3bSJed Brown if (overlap > 0) { 11950a96aa3bSJed Brown PetscInt i, cLocalStart; 11960a96aa3bSJed Brown PetscInt cEnd; 11970a96aa3bSJed Brown PetscSF preCellSF = NULL, cellSF = NULL; 11980a96aa3bSJed Brown 1199792fecdfSBarry Smith PetscCallP4estReturn(pforest->ghost, p4est_ghost_new, (pforest->forest, P4EST_CONNECT_FULL)); 1200792fecdfSBarry Smith PetscCallP4estReturn(pforest->lnodes, p4est_lnodes_new, (pforest->forest, pforest->ghost, -P4EST_DIM)); 1201792fecdfSBarry Smith PetscCallP4est(p4est_ghost_support_lnodes, (pforest->forest, pforest->lnodes, pforest->ghost)); 1202792fecdfSBarry Smith for (i = 1; i < overlap; i++) PetscCallP4est(p4est_ghost_expand_by_lnodes, (pforest->forest, pforest->lnodes, pforest->ghost)); 12030a96aa3bSJed Brown 12040a96aa3bSJed Brown cLocalStart = pforest->cLocalStart = pforest->ghost->proc_offsets[rank]; 12050a96aa3bSJed Brown cEnd = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[size]; 12060a96aa3bSJed Brown 12070a96aa3bSJed Brown /* shift sfs by cLocalStart, expand by cell SFs */ 12080a96aa3bSJed Brown if (preCoarseToFine || coarseToPreFine) { 12099566063dSJacob Faibussowitsch if (adaptFrom) PetscCall(DMForestGetCellSF(adaptFrom, &preCellSF)); 12100a96aa3bSJed Brown dm->setupcalled = PETSC_TRUE; 12119566063dSJacob Faibussowitsch PetscCall(DMForestGetCellSF(dm, &cellSF)); 12120a96aa3bSJed Brown } 12130a96aa3bSJed Brown if (preCoarseToFine) { 12140a96aa3bSJed Brown PetscSF preCoarseToFineNew; 12150a96aa3bSJed Brown PetscInt nleaves, nroots, *leavesNew, i, nleavesNew; 12160a96aa3bSJed Brown const PetscInt *leaves; 12170a96aa3bSJed Brown const PetscSFNode *remotes; 12180a96aa3bSJed Brown PetscSFNode *remotesAll; 12190a96aa3bSJed Brown 12209566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(preCoarseToFine)); 12219566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(preCoarseToFine, &nroots, &nleaves, &leaves, &remotes)); 12229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEnd, &remotesAll)); 12230a96aa3bSJed Brown for (i = 0; i < cEnd; i++) { 12240a96aa3bSJed Brown remotesAll[i].rank = -1; 12250a96aa3bSJed Brown remotesAll[i].index = -1; 12260a96aa3bSJed Brown } 12270a96aa3bSJed Brown for (i = 0; i < nleaves; i++) remotesAll[(leaves ? leaves[i] : i) + cLocalStart] = remotes[i]; 12289566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(cellSF)); 12299566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(cellSF, MPIU_2INT, remotesAll, remotesAll, MPI_REPLACE)); 12309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(cellSF, MPIU_2INT, remotesAll, remotesAll, MPI_REPLACE)); 12310a96aa3bSJed Brown nleavesNew = 0; 12320a96aa3bSJed Brown for (i = 0; i < nleaves; i++) { 12330a96aa3bSJed Brown if (remotesAll[i].rank >= 0) nleavesNew++; 12340a96aa3bSJed Brown } 12359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleavesNew, &leavesNew)); 12360a96aa3bSJed Brown nleavesNew = 0; 12370a96aa3bSJed Brown for (i = 0; i < nleaves; i++) { 12380a96aa3bSJed Brown if (remotesAll[i].rank >= 0) { 12390a96aa3bSJed Brown leavesNew[nleavesNew] = i; 12400a96aa3bSJed Brown if (i > nleavesNew) remotesAll[nleavesNew] = remotesAll[i]; 12410a96aa3bSJed Brown nleavesNew++; 12420a96aa3bSJed Brown } 12430a96aa3bSJed Brown } 12449566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &preCoarseToFineNew)); 12450a96aa3bSJed Brown if (nleavesNew < cEnd) { 12469566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(preCoarseToFineNew, nroots, nleavesNew, leavesNew, PETSC_OWN_POINTER, remotesAll, PETSC_COPY_VALUES)); 12470a96aa3bSJed Brown } else { /* all cells are leaves */ 12489566063dSJacob Faibussowitsch PetscCall(PetscFree(leavesNew)); 12499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(preCoarseToFineNew, nroots, nleavesNew, NULL, PETSC_OWN_POINTER, remotesAll, PETSC_COPY_VALUES)); 12500a96aa3bSJed Brown } 12519566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesAll)); 12529566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&preCoarseToFine)); 12530a96aa3bSJed Brown preCoarseToFine = preCoarseToFineNew; 12540a96aa3bSJed Brown preCoarseToFine = preCoarseToFineNew; 12550a96aa3bSJed Brown } 12560a96aa3bSJed Brown if (coarseToPreFine) { 12570a96aa3bSJed Brown PetscSF coarseToPreFineNew; 12580a96aa3bSJed Brown PetscInt nleaves, nroots, i, nleavesCellSF, nleavesExpanded, *leavesNew; 12590a96aa3bSJed Brown const PetscInt *leaves; 12600a96aa3bSJed Brown const PetscSFNode *remotes; 12610a96aa3bSJed Brown PetscSFNode *remotesNew, *remotesNewRoot, *remotesExpanded; 12620a96aa3bSJed Brown 12639566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(coarseToPreFine)); 12649566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseToPreFine, &nroots, &nleaves, &leaves, &remotes)); 12659566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(preCellSF, NULL, &nleavesCellSF, NULL, NULL)); 12669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &remotesNewRoot)); 12679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &remotesNew)); 12680a96aa3bSJed Brown for (i = 0; i < nroots; i++) { 12690a96aa3bSJed Brown remotesNewRoot[i].rank = rank; 12700a96aa3bSJed Brown remotesNewRoot[i].index = i + cLocalStart; 12710a96aa3bSJed Brown } 12729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coarseToPreFine, MPIU_2INT, remotesNewRoot, remotesNew, MPI_REPLACE)); 12739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coarseToPreFine, MPIU_2INT, remotesNewRoot, remotesNew, MPI_REPLACE)); 12749566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesNewRoot)); 12759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleavesCellSF, &remotesExpanded)); 12760a96aa3bSJed Brown for (i = 0; i < nleavesCellSF; i++) { 12770a96aa3bSJed Brown remotesExpanded[i].rank = -1; 12780a96aa3bSJed Brown remotesExpanded[i].index = -1; 12790a96aa3bSJed Brown } 12800a96aa3bSJed Brown for (i = 0; i < nleaves; i++) remotesExpanded[leaves ? leaves[i] : i] = remotesNew[i]; 12819566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesNew)); 12829566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(preCellSF, MPIU_2INT, remotesExpanded, remotesExpanded, MPI_REPLACE)); 12839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(preCellSF, MPIU_2INT, remotesExpanded, remotesExpanded, MPI_REPLACE)); 12840a96aa3bSJed Brown 12850a96aa3bSJed Brown nleavesExpanded = 0; 12860a96aa3bSJed Brown for (i = 0; i < nleavesCellSF; i++) { 12870a96aa3bSJed Brown if (remotesExpanded[i].rank >= 0) nleavesExpanded++; 12880a96aa3bSJed Brown } 12899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleavesExpanded, &leavesNew)); 12900a96aa3bSJed Brown nleavesExpanded = 0; 12910a96aa3bSJed Brown for (i = 0; i < nleavesCellSF; i++) { 12920a96aa3bSJed Brown if (remotesExpanded[i].rank >= 0) { 12930a96aa3bSJed Brown leavesNew[nleavesExpanded] = i; 12940a96aa3bSJed Brown if (i > nleavesExpanded) remotesExpanded[nleavesExpanded] = remotes[i]; 12950a96aa3bSJed Brown nleavesExpanded++; 12960a96aa3bSJed Brown } 12970a96aa3bSJed Brown } 12989566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &coarseToPreFineNew)); 12990a96aa3bSJed Brown if (nleavesExpanded < nleavesCellSF) { 13009566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(coarseToPreFineNew, cEnd, nleavesExpanded, leavesNew, PETSC_OWN_POINTER, remotesExpanded, PETSC_COPY_VALUES)); 13010a96aa3bSJed Brown } else { 13029566063dSJacob Faibussowitsch PetscCall(PetscFree(leavesNew)); 13039566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(coarseToPreFineNew, cEnd, nleavesExpanded, NULL, PETSC_OWN_POINTER, remotesExpanded, PETSC_COPY_VALUES)); 13040a96aa3bSJed Brown } 13059566063dSJacob Faibussowitsch PetscCall(PetscFree(remotesExpanded)); 13069566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseToPreFine)); 13070a96aa3bSJed Brown coarseToPreFine = coarseToPreFineNew; 13080a96aa3bSJed Brown } 13090a96aa3bSJed Brown } 13100a96aa3bSJed Brown } 13110a96aa3bSJed Brown } 13120a96aa3bSJed Brown forest->preCoarseToFine = preCoarseToFine; 13130a96aa3bSJed Brown forest->coarseToPreFine = coarseToPreFine; 13140a96aa3bSJed Brown dm->setupcalled = PETSC_TRUE; 1315d72c4dc2SStefano Zampini PetscCall(MPIU_Allreduce(&ctx.anyChange, &pforest->adaptivitySuccess, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 13169566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, NULL)); 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13180a96aa3bSJed Brown } 13190a96aa3bSJed Brown 13200a96aa3bSJed Brown #define DMForestGetAdaptivitySuccess_pforest _append_pforest(DMForestGetAdaptivitySuccess) 1321d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestGetAdaptivitySuccess_pforest(DM dm, PetscBool *success) 1322d71ae5a4SJacob Faibussowitsch { 13230a96aa3bSJed Brown DM_Forest *forest; 13240a96aa3bSJed Brown DM_Forest_pforest *pforest; 13250a96aa3bSJed Brown 13260a96aa3bSJed Brown PetscFunctionBegin; 13270a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 13280a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 13290a96aa3bSJed Brown *success = pforest->adaptivitySuccess; 13303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13310a96aa3bSJed Brown } 13320a96aa3bSJed Brown 13330a96aa3bSJed Brown #define DMView_ASCII_pforest _append_pforest(DMView_ASCII) 1334d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_ASCII_pforest(PetscObject odm, PetscViewer viewer) 1335d71ae5a4SJacob Faibussowitsch { 13360a96aa3bSJed Brown DM dm = (DM)odm; 13370a96aa3bSJed Brown 13380a96aa3bSJed Brown PetscFunctionBegin; 13390a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13400a96aa3bSJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 13419566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 13420a96aa3bSJed Brown switch (viewer->format) { 13430a96aa3bSJed Brown case PETSC_VIEWER_DEFAULT: 13449371c9d4SSatish Balay case PETSC_VIEWER_ASCII_INFO: { 13450a96aa3bSJed Brown PetscInt dim; 13460a96aa3bSJed Brown const char *name; 13470a96aa3bSJed Brown 13489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)dm, &name)); 13499566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 135063a3b9bcSJacob Faibussowitsch if (name) PetscCall(PetscViewerASCIIPrintf(viewer, "Forest %s in %" PetscInt_FMT " dimensions:\n", name, dim)); 135163a3b9bcSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Forest in %" PetscInt_FMT " dimensions:\n", dim)); 1352f4d061e9SPierre Jolivet } /* fall through */ 13530a96aa3bSJed Brown case PETSC_VIEWER_ASCII_INFO_DETAIL: 13549371c9d4SSatish Balay case PETSC_VIEWER_LOAD_BALANCE: { 13550a96aa3bSJed Brown DM plex; 13560a96aa3bSJed Brown 13579566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 13589566063dSJacob Faibussowitsch PetscCall(DMView(plex, viewer)); 13599371c9d4SSatish Balay } break; 1360d71ae5a4SJacob Faibussowitsch default: 1361d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]); 13620a96aa3bSJed Brown } 13633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13640a96aa3bSJed Brown } 13650a96aa3bSJed Brown 13660a96aa3bSJed Brown #define DMView_VTK_pforest _append_pforest(DMView_VTK) 1367d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_VTK_pforest(PetscObject odm, PetscViewer viewer) 1368d71ae5a4SJacob Faibussowitsch { 13690a96aa3bSJed Brown DM dm = (DM)odm; 13700a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 13710a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 13720a96aa3bSJed Brown PetscBool isvtk; 13730a96aa3bSJed Brown PetscReal vtkScale = 1. - PETSC_MACHINE_EPSILON; 13740a96aa3bSJed Brown PetscViewer_VTK *vtk = (PetscViewer_VTK *)viewer->data; 13750a96aa3bSJed Brown const char *name; 13760a96aa3bSJed Brown char *filenameStrip = NULL; 13770a96aa3bSJed Brown PetscBool hasExt; 13780a96aa3bSJed Brown size_t len; 13790a96aa3bSJed Brown p4est_geometry_t *geom; 13800a96aa3bSJed Brown 13810a96aa3bSJed Brown PetscFunctionBegin; 13820a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13830a96aa3bSJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 13849566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 13850a96aa3bSJed Brown geom = pforest->topo->geom; 13869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERVTK, &isvtk)); 138728b400f6SJacob Faibussowitsch PetscCheck(isvtk, PetscObjectComm((PetscObject)viewer), PETSC_ERR_ARG_INCOMP, "Cannot use viewer type %s", ((PetscObject)viewer)->type_name); 13880a96aa3bSJed Brown switch (viewer->format) { 13890a96aa3bSJed Brown case PETSC_VIEWER_VTK_VTU: 139028b400f6SJacob Faibussowitsch PetscCheck(pforest->forest, PetscObjectComm(odm), PETSC_ERR_ARG_WRONG, "DM has not been setup with a valid forest"); 13910a96aa3bSJed Brown name = vtk->filename; 13929566063dSJacob Faibussowitsch PetscCall(PetscStrlen(name, &len)); 13939566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp(name + len - 4, ".vtu", &hasExt)); 13940a96aa3bSJed Brown if (hasExt) { 13959566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &filenameStrip)); 13960a96aa3bSJed Brown filenameStrip[len - 4] = '\0'; 13970a96aa3bSJed Brown name = filenameStrip; 13980a96aa3bSJed Brown } 1399792fecdfSBarry Smith if (!pforest->topo->geom) PetscCallP4estReturn(geom, p4est_geometry_new_connectivity, (pforest->topo->conn)); 14000a96aa3bSJed Brown { 14010a96aa3bSJed Brown p4est_vtk_context_t *pvtk; 14020a96aa3bSJed Brown int footerr; 14030a96aa3bSJed Brown 1404792fecdfSBarry Smith PetscCallP4estReturn(pvtk, p4est_vtk_context_new, (pforest->forest, name)); 1405792fecdfSBarry Smith PetscCallP4est(p4est_vtk_context_set_geom, (pvtk, geom)); 1406792fecdfSBarry Smith PetscCallP4est(p4est_vtk_context_set_scale, (pvtk, (double)vtkScale)); 1407792fecdfSBarry Smith PetscCallP4estReturn(pvtk, p4est_vtk_write_header, (pvtk)); 140828b400f6SJacob Faibussowitsch PetscCheck(pvtk, PetscObjectComm((PetscObject)odm), PETSC_ERR_LIB, P4EST_STRING "_vtk_write_header() failed"); 14099371c9d4SSatish Balay PetscCallP4estReturn(pvtk, p4est_vtk_write_cell_dataf, 14109371c9d4SSatish Balay (pvtk, 1, /* write tree */ 14110a96aa3bSJed Brown 1, /* write level */ 14120a96aa3bSJed Brown 1, /* write rank */ 14130a96aa3bSJed Brown 0, /* do not wrap rank */ 14140a96aa3bSJed Brown 0, /* no scalar fields */ 14150a96aa3bSJed Brown 0, /* no vector fields */ 14160a96aa3bSJed Brown pvtk)); 141728b400f6SJacob Faibussowitsch PetscCheck(pvtk, PetscObjectComm((PetscObject)odm), PETSC_ERR_LIB, P4EST_STRING "_vtk_write_cell_dataf() failed"); 1418792fecdfSBarry Smith PetscCallP4estReturn(footerr, p4est_vtk_write_footer, (pvtk)); 141928b400f6SJacob Faibussowitsch PetscCheck(!footerr, PetscObjectComm((PetscObject)odm), PETSC_ERR_LIB, P4EST_STRING "_vtk_write_footer() failed"); 14200a96aa3bSJed Brown } 1421792fecdfSBarry Smith if (!pforest->topo->geom) PetscCallP4est(p4est_geometry_destroy, (geom)); 14229566063dSJacob Faibussowitsch PetscCall(PetscFree(filenameStrip)); 14230a96aa3bSJed Brown break; 1424d71ae5a4SJacob Faibussowitsch default: 1425d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No support for format '%s'", PetscViewerFormats[viewer->format]); 14260a96aa3bSJed Brown } 14273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14280a96aa3bSJed Brown } 14290a96aa3bSJed Brown 14300a96aa3bSJed Brown #define DMView_HDF5_pforest _append_pforest(DMView_HDF5) 1431d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_HDF5_pforest(DM dm, PetscViewer viewer) 1432d71ae5a4SJacob Faibussowitsch { 14330a96aa3bSJed Brown DM plex; 14340a96aa3bSJed Brown 14350a96aa3bSJed Brown PetscFunctionBegin; 14369566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 14379566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 14389566063dSJacob Faibussowitsch PetscCall(DMView(plex, viewer)); 14393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14400a96aa3bSJed Brown } 14410a96aa3bSJed Brown 14420a96aa3bSJed Brown #define DMView_GLVis_pforest _append_pforest(DMView_GLVis) 1443d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_GLVis_pforest(DM dm, PetscViewer viewer) 1444d71ae5a4SJacob Faibussowitsch { 14450a96aa3bSJed Brown DM plex; 14460a96aa3bSJed Brown 14470a96aa3bSJed Brown PetscFunctionBegin; 14489566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 14499566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 14509566063dSJacob Faibussowitsch PetscCall(DMView(plex, viewer)); 14513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14520a96aa3bSJed Brown } 14530a96aa3bSJed Brown 14540a96aa3bSJed Brown #define DMView_pforest _append_pforest(DMView) 1455d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMView_pforest(DM dm, PetscViewer viewer) 1456d71ae5a4SJacob Faibussowitsch { 14570a96aa3bSJed Brown PetscBool isascii, isvtk, ishdf5, isglvis; 14580a96aa3bSJed Brown 14590a96aa3bSJed Brown PetscFunctionBegin; 14600a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14610a96aa3bSJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 14629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 14639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERVTK, &isvtk)); 14649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 14659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERGLVIS, &isglvis)); 14660a96aa3bSJed Brown if (isascii) { 14679566063dSJacob Faibussowitsch PetscCall(DMView_ASCII_pforest((PetscObject)dm, viewer)); 14680a96aa3bSJed Brown } else if (isvtk) { 14699566063dSJacob Faibussowitsch PetscCall(DMView_VTK_pforest((PetscObject)dm, viewer)); 14700a96aa3bSJed Brown } else if (ishdf5) { 14719566063dSJacob Faibussowitsch PetscCall(DMView_HDF5_pforest(dm, viewer)); 14720a96aa3bSJed Brown } else if (isglvis) { 14739566063dSJacob Faibussowitsch PetscCall(DMView_GLVis_pforest(dm, viewer)); 14740a96aa3bSJed Brown } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Viewer not supported (not VTK, HDF5, or GLVis)"); 14753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14760a96aa3bSJed Brown } 14770a96aa3bSJed Brown 1478d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestConnectivityEnumerateFacets(p4est_connectivity_t *conn, PetscInt **tree_face_to_uniq) 1479d71ae5a4SJacob Faibussowitsch { 14800a96aa3bSJed Brown PetscInt *ttf, f, t, g, count; 14810a96aa3bSJed Brown PetscInt numFacets; 14820a96aa3bSJed Brown 14830a96aa3bSJed Brown PetscFunctionBegin; 14840a96aa3bSJed Brown numFacets = conn->num_trees * P4EST_FACES; 14859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFacets, &ttf)); 14860a96aa3bSJed Brown for (f = 0; f < numFacets; f++) ttf[f] = -1; 14870a96aa3bSJed Brown for (g = 0, count = 0, t = 0; t < conn->num_trees; t++) { 14880a96aa3bSJed Brown for (f = 0; f < P4EST_FACES; f++, g++) { 14890a96aa3bSJed Brown if (ttf[g] == -1) { 14900a96aa3bSJed Brown PetscInt ng; 14910a96aa3bSJed Brown 14920a96aa3bSJed Brown ttf[g] = count++; 14930a96aa3bSJed Brown ng = conn->tree_to_tree[g] * P4EST_FACES + (conn->tree_to_face[g] % P4EST_FACES); 14940a96aa3bSJed Brown ttf[ng] = ttf[g]; 14950a96aa3bSJed Brown } 14960a96aa3bSJed Brown } 14970a96aa3bSJed Brown } 14980a96aa3bSJed Brown *tree_face_to_uniq = ttf; 14993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15000a96aa3bSJed Brown } 15010a96aa3bSJed Brown 1502d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateConnectivity_pforest(DM dm, p4est_connectivity_t **connOut, PetscInt **tree_face_to_uniq) 1503d71ae5a4SJacob Faibussowitsch { 15040a96aa3bSJed Brown p4est_topidx_t numTrees, numVerts, numCorns, numCtt; 15050a96aa3bSJed Brown PetscSection ctt; 15060a96aa3bSJed Brown #if defined(P4_TO_P8) 15070a96aa3bSJed Brown p4est_topidx_t numEdges, numEtt; 15080a96aa3bSJed Brown PetscSection ett; 15090a96aa3bSJed Brown PetscInt eStart, eEnd, e, ettSize; 15100a96aa3bSJed Brown PetscInt vertOff = 1 + P4EST_FACES + P8EST_EDGES; 15110a96aa3bSJed Brown PetscInt edgeOff = 1 + P4EST_FACES; 15120a96aa3bSJed Brown #else 15130a96aa3bSJed Brown PetscInt vertOff = 1 + P4EST_FACES; 15140a96aa3bSJed Brown #endif 15150a96aa3bSJed Brown p4est_connectivity_t *conn; 15160a96aa3bSJed Brown PetscInt cStart, cEnd, c, vStart, vEnd, v, fStart, fEnd, f; 15170a96aa3bSJed Brown PetscInt *star = NULL, *closure = NULL, closureSize, starSize, cttSize; 15180a96aa3bSJed Brown PetscInt *ttf; 15190a96aa3bSJed Brown 15200a96aa3bSJed Brown PetscFunctionBegin; 15210a96aa3bSJed Brown /* 1: count objects, allocate */ 15229566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 15239566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(cEnd - cStart, &numTrees)); 15240a96aa3bSJed Brown numVerts = P4EST_CHILDREN * numTrees; 15259566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 15269566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(vEnd - vStart, &numCorns)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &ctt)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ctt, vStart, vEnd)); 15290a96aa3bSJed Brown for (v = vStart; v < vEnd; v++) { 15300a96aa3bSJed Brown PetscInt s; 15310a96aa3bSJed Brown 15329566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 15330a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 15340a96aa3bSJed Brown PetscInt p = star[2 * s]; 15350a96aa3bSJed Brown 15360a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 15370a96aa3bSJed Brown /* we want to count every time cell p references v, so we see how many times it comes up in the closure. This 15380a96aa3bSJed Brown * only protects against periodicity problems */ 15399566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 154063a3b9bcSJacob Faibussowitsch PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Cell %" PetscInt_FMT " with wrong closure size %" PetscInt_FMT " != %d", p, closureSize, P4EST_INSUL); 15410a96aa3bSJed Brown for (c = 0; c < P4EST_CHILDREN; c++) { 15420a96aa3bSJed Brown PetscInt cellVert = closure[2 * (c + vertOff)]; 15430a96aa3bSJed Brown 15441dca8a05SBarry Smith PetscCheck(cellVert >= vStart && cellVert < vEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure: vertices"); 154548a46eb9SPierre Jolivet if (cellVert == v) PetscCall(PetscSectionAddDof(ctt, v, 1)); 15460a96aa3bSJed Brown } 15479566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 15480a96aa3bSJed Brown } 15490a96aa3bSJed Brown } 15509566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 15510a96aa3bSJed Brown } 15529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ctt)); 15539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(ctt, &cttSize)); 15549566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(cttSize, &numCtt)); 15550a96aa3bSJed Brown #if defined(P4_TO_P8) 15569566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, P4EST_DIM - 1, &eStart, &eEnd)); 15579566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(eEnd - eStart, &numEdges)); 15589566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &ett)); 15599566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ett, eStart, eEnd)); 15600a96aa3bSJed Brown for (e = eStart; e < eEnd; e++) { 15610a96aa3bSJed Brown PetscInt s; 15620a96aa3bSJed Brown 15639566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star)); 15640a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 15650a96aa3bSJed Brown PetscInt p = star[2 * s]; 15660a96aa3bSJed Brown 15670a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 15680a96aa3bSJed Brown /* we want to count every time cell p references e, so we see how many times it comes up in the closure. This 15690a96aa3bSJed Brown * only protects against periodicity problems */ 15709566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 157108401ef6SPierre Jolivet PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Cell with wrong closure size"); 15720a96aa3bSJed Brown for (c = 0; c < P8EST_EDGES; c++) { 15730a96aa3bSJed Brown PetscInt cellEdge = closure[2 * (c + edgeOff)]; 15740a96aa3bSJed Brown 15751dca8a05SBarry Smith PetscCheck(cellEdge >= eStart && cellEdge < eEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure: edges"); 157648a46eb9SPierre Jolivet if (cellEdge == e) PetscCall(PetscSectionAddDof(ett, e, 1)); 15770a96aa3bSJed Brown } 15789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 15790a96aa3bSJed Brown } 15800a96aa3bSJed Brown } 15819566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star)); 15820a96aa3bSJed Brown } 15839566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ett)); 15849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(ett, &ettSize)); 15859566063dSJacob Faibussowitsch PetscCall(P4estTopidxCast(ettSize, &numEtt)); 15860a96aa3bSJed Brown 15870a96aa3bSJed Brown /* This routine allocates space for the arrays, which we fill below */ 1588792fecdfSBarry Smith PetscCallP4estReturn(conn, p8est_connectivity_new, (numVerts, numTrees, numEdges, numEtt, numCorns, numCtt)); 15890a96aa3bSJed Brown #else 1590792fecdfSBarry Smith PetscCallP4estReturn(conn, p4est_connectivity_new, (numVerts, numTrees, numCorns, numCtt)); 15910a96aa3bSJed Brown #endif 15920a96aa3bSJed Brown 15930a96aa3bSJed Brown /* 2: visit every face, determine neighboring cells(trees) */ 15949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 1, &fStart, &fEnd)); 15959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((cEnd - cStart) * P4EST_FACES, &ttf)); 15960a96aa3bSJed Brown for (f = fStart; f < fEnd; f++) { 15970a96aa3bSJed Brown PetscInt numSupp, s; 15980a96aa3bSJed Brown PetscInt myFace[2] = {-1, -1}; 15990a96aa3bSJed Brown PetscInt myOrnt[2] = {PETSC_MIN_INT, PETSC_MIN_INT}; 16000a96aa3bSJed Brown const PetscInt *supp; 16010a96aa3bSJed Brown 16029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &numSupp)); 16031dca8a05SBarry Smith PetscCheck(numSupp == 1 || numSupp == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "point %" PetscInt_FMT " has facet with %" PetscInt_FMT " sides: must be 1 or 2 (boundary or conformal)", f, numSupp); 16049566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, f, &supp)); 16050a96aa3bSJed Brown 16060a96aa3bSJed Brown for (s = 0; s < numSupp; s++) { 16070a96aa3bSJed Brown PetscInt p = supp[s]; 16080a96aa3bSJed Brown 16090a96aa3bSJed Brown if (p >= cEnd) { 16100a96aa3bSJed Brown numSupp--; 16110a96aa3bSJed Brown if (s) supp = &supp[1 - s]; 16120a96aa3bSJed Brown break; 16130a96aa3bSJed Brown } 16140a96aa3bSJed Brown } 16150a96aa3bSJed Brown for (s = 0; s < numSupp; s++) { 16160a96aa3bSJed Brown PetscInt p = supp[s], i; 16170a96aa3bSJed Brown PetscInt numCone; 16180a96aa3bSJed Brown DMPolytopeType ct; 16190a96aa3bSJed Brown const PetscInt *cone; 16200a96aa3bSJed Brown const PetscInt *ornt; 16210a96aa3bSJed Brown PetscInt orient = PETSC_MIN_INT; 16220a96aa3bSJed Brown 16239566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &numCone)); 162463a3b9bcSJacob Faibussowitsch PetscCheck(numCone == P4EST_FACES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "cell %" PetscInt_FMT " has %" PetscInt_FMT " facets, expect %d", p, numCone, P4EST_FACES); 16259566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 16269566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[0], &ct)); 16279566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &ornt)); 16280a96aa3bSJed Brown for (i = 0; i < P4EST_FACES; i++) { 16290a96aa3bSJed Brown if (cone[i] == f) { 16300a96aa3bSJed Brown orient = DMPolytopeConvertNewOrientation_Internal(ct, ornt[i]); 16310a96aa3bSJed Brown break; 16320a96aa3bSJed Brown } 16330a96aa3bSJed Brown } 163463a3b9bcSJacob Faibussowitsch PetscCheck(i < P4EST_FACES, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "cell %" PetscInt_FMT " faced %" PetscInt_FMT " mismatch", p, f); 16350a96aa3bSJed Brown if (p < cStart || p >= cEnd) { 16360a96aa3bSJed Brown DMPolytopeType ct; 16379566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 163863a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "cell %" PetscInt_FMT " (%s) should be in [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, DMPolytopeTypes[ct], cStart, cEnd); 16390a96aa3bSJed Brown } 16400a96aa3bSJed Brown ttf[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = f - fStart; 16410a96aa3bSJed Brown if (numSupp == 1) { 16420a96aa3bSJed Brown /* boundary faces indicated by self reference */ 16430a96aa3bSJed Brown conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = p - cStart; 16440a96aa3bSJed Brown conn->tree_to_face[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = (int8_t)PetscFaceToP4estFace[i]; 16450a96aa3bSJed Brown } else { 16460a96aa3bSJed Brown const PetscInt N = P4EST_CHILDREN / 2; 16470a96aa3bSJed Brown 16480a96aa3bSJed Brown conn->tree_to_tree[P4EST_FACES * (p - cStart) + PetscFaceToP4estFace[i]] = supp[1 - s] - cStart; 16490a96aa3bSJed Brown myFace[s] = PetscFaceToP4estFace[i]; 16500a96aa3bSJed Brown /* get the orientation of cell p in p4est-type closure to facet f, by composing the p4est-closure to 16510a96aa3bSJed Brown * petsc-closure permutation and the petsc-closure to facet orientation */ 16520a96aa3bSJed Brown myOrnt[s] = DihedralCompose(N, orient, DMPolytopeConvertNewOrientation_Internal(ct, P4estFaceToPetscOrnt[myFace[s]])); 16530a96aa3bSJed Brown } 16540a96aa3bSJed Brown } 16550a96aa3bSJed Brown if (numSupp == 2) { 16560a96aa3bSJed Brown for (s = 0; s < numSupp; s++) { 16570a96aa3bSJed Brown PetscInt p = supp[s]; 16580a96aa3bSJed Brown PetscInt orntAtoB; 16590a96aa3bSJed Brown PetscInt p4estOrient; 16600a96aa3bSJed Brown const PetscInt N = P4EST_CHILDREN / 2; 16610a96aa3bSJed Brown 16620a96aa3bSJed Brown /* composing the forward permutation with the other cell's inverse permutation gives the self-to-neighbor 16630a96aa3bSJed Brown * permutation of this cell-facet's cone */ 16640a96aa3bSJed Brown orntAtoB = DihedralCompose(N, DihedralInvert(N, myOrnt[1 - s]), myOrnt[s]); 16650a96aa3bSJed Brown 16660a96aa3bSJed Brown /* convert cone-description permutation (i.e., edges around facet) to cap-description permutation (i.e., 16670a96aa3bSJed Brown * vertices around facet) */ 16680a96aa3bSJed Brown #if !defined(P4_TO_P8) 16690a96aa3bSJed Brown p4estOrient = orntAtoB < 0 ? -(orntAtoB + 1) : orntAtoB; 16700a96aa3bSJed Brown #else 16710a96aa3bSJed Brown { 16720a96aa3bSJed Brown PetscInt firstVert = orntAtoB < 0 ? ((-orntAtoB) % N) : orntAtoB; 16730a96aa3bSJed Brown PetscInt p4estFirstVert = firstVert < 2 ? firstVert : (firstVert ^ 1); 16740a96aa3bSJed Brown 16750a96aa3bSJed Brown /* swap bits */ 16760a96aa3bSJed Brown p4estOrient = ((myFace[s] <= myFace[1 - s]) || (orntAtoB < 0)) ? p4estFirstVert : ((p4estFirstVert >> 1) | ((p4estFirstVert & 1) << 1)); 16770a96aa3bSJed Brown } 16780a96aa3bSJed Brown #endif 16790a96aa3bSJed Brown /* encode neighbor face and orientation in tree_to_face per p4est_connectivity standard (see 16800a96aa3bSJed Brown * p4est_connectivity.h, p8est_connectivity.h) */ 16810a96aa3bSJed Brown conn->tree_to_face[P4EST_FACES * (p - cStart) + myFace[s]] = (int8_t)myFace[1 - s] + p4estOrient * P4EST_FACES; 16820a96aa3bSJed Brown } 16830a96aa3bSJed Brown } 16840a96aa3bSJed Brown } 16850a96aa3bSJed Brown 16860a96aa3bSJed Brown #if defined(P4_TO_P8) 16870a96aa3bSJed Brown /* 3: visit every edge */ 16880a96aa3bSJed Brown conn->ett_offset[0] = 0; 16890a96aa3bSJed Brown for (e = eStart; e < eEnd; e++) { 16900a96aa3bSJed Brown PetscInt off, s; 16910a96aa3bSJed Brown 16929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(ett, e, &off)); 16930a96aa3bSJed Brown conn->ett_offset[e - eStart] = (p4est_topidx_t)off; 16949566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star)); 16950a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 16960a96aa3bSJed Brown PetscInt p = star[2 * s]; 16970a96aa3bSJed Brown 16980a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 16999566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 170008401ef6SPierre Jolivet PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure"); 17010a96aa3bSJed Brown for (c = 0; c < P8EST_EDGES; c++) { 17020a96aa3bSJed Brown PetscInt cellEdge = closure[2 * (c + edgeOff)]; 17030a96aa3bSJed Brown PetscInt cellOrnt = closure[2 * (c + edgeOff) + 1]; 17040a96aa3bSJed Brown DMPolytopeType ct; 17050a96aa3bSJed Brown 17069566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cellEdge, &ct)); 17070a96aa3bSJed Brown cellOrnt = DMPolytopeConvertNewOrientation_Internal(ct, cellOrnt); 17080a96aa3bSJed Brown if (cellEdge == e) { 17090a96aa3bSJed Brown PetscInt p4estEdge = PetscEdgeToP4estEdge[c]; 17100a96aa3bSJed Brown PetscInt totalOrient; 17110a96aa3bSJed Brown 17120a96aa3bSJed Brown /* compose p4est-closure to petsc-closure permutation and petsc-closure to edge orientation */ 17130a96aa3bSJed Brown totalOrient = DihedralCompose(2, cellOrnt, DMPolytopeConvertNewOrientation_Internal(DM_POLYTOPE_SEGMENT, P4estEdgeToPetscOrnt[p4estEdge])); 17140a96aa3bSJed Brown /* p4est orientations are positive: -2 => 1, -1 => 0 */ 17150a96aa3bSJed Brown totalOrient = (totalOrient < 0) ? -(totalOrient + 1) : totalOrient; 17160a96aa3bSJed Brown conn->edge_to_tree[off] = (p4est_locidx_t)(p - cStart); 1717d5b43468SJose E. Roman /* encode cell-edge and orientation in edge_to_edge per p8est_connectivity standard (see 17180a96aa3bSJed Brown * p8est_connectivity.h) */ 17190a96aa3bSJed Brown conn->edge_to_edge[off++] = (int8_t)p4estEdge + P8EST_EDGES * totalOrient; 17200a96aa3bSJed Brown conn->tree_to_edge[P8EST_EDGES * (p - cStart) + p4estEdge] = e - eStart; 17210a96aa3bSJed Brown } 17220a96aa3bSJed Brown } 17239566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 17240a96aa3bSJed Brown } 17250a96aa3bSJed Brown } 17269566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, e, PETSC_FALSE, &starSize, &star)); 17270a96aa3bSJed Brown } 17289566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&ett)); 17290a96aa3bSJed Brown #endif 17300a96aa3bSJed Brown 17310a96aa3bSJed Brown /* 4: visit every vertex */ 17320a96aa3bSJed Brown conn->ctt_offset[0] = 0; 17330a96aa3bSJed Brown for (v = vStart; v < vEnd; v++) { 17340a96aa3bSJed Brown PetscInt off, s; 17350a96aa3bSJed Brown 17369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(ctt, v, &off)); 17370a96aa3bSJed Brown conn->ctt_offset[v - vStart] = (p4est_topidx_t)off; 17389566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 17390a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 17400a96aa3bSJed Brown PetscInt p = star[2 * s]; 17410a96aa3bSJed Brown 17420a96aa3bSJed Brown if (p >= cStart && p < cEnd) { 17439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 174408401ef6SPierre Jolivet PetscCheck(closureSize == P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Non-standard closure"); 17450a96aa3bSJed Brown for (c = 0; c < P4EST_CHILDREN; c++) { 17460a96aa3bSJed Brown PetscInt cellVert = closure[2 * (c + vertOff)]; 17470a96aa3bSJed Brown 17480a96aa3bSJed Brown if (cellVert == v) { 17490a96aa3bSJed Brown PetscInt p4estVert = PetscVertToP4estVert[c]; 17500a96aa3bSJed Brown 17510a96aa3bSJed Brown conn->corner_to_tree[off] = (p4est_locidx_t)(p - cStart); 17520a96aa3bSJed Brown conn->corner_to_corner[off++] = (int8_t)p4estVert; 17530a96aa3bSJed Brown conn->tree_to_corner[P4EST_CHILDREN * (p - cStart) + p4estVert] = v - vStart; 17540a96aa3bSJed Brown } 17550a96aa3bSJed Brown } 17569566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, PETSC_TRUE, &closureSize, &closure)); 17570a96aa3bSJed Brown } 17580a96aa3bSJed Brown } 17599566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 17600a96aa3bSJed Brown } 17619566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&ctt)); 17620a96aa3bSJed Brown 17630a96aa3bSJed Brown /* 5: Compute the coordinates */ 17640a96aa3bSJed Brown { 17650a96aa3bSJed Brown PetscInt coordDim; 17660a96aa3bSJed Brown 17679566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 17686858538eSMatthew G. Knepley PetscCall(DMGetCoordinatesLocalSetUp(dm)); 17690a96aa3bSJed Brown for (c = cStart; c < cEnd; c++) { 17700a96aa3bSJed Brown PetscInt dof; 17716858538eSMatthew G. Knepley PetscBool isDG; 17720a96aa3bSJed Brown PetscScalar *cellCoords = NULL; 17736858538eSMatthew G. Knepley const PetscScalar *array; 17740a96aa3bSJed Brown 17756858538eSMatthew G. Knepley PetscCall(DMPlexGetCellCoordinates(dm, c, &isDG, &dof, &array, &cellCoords)); 17766858538eSMatthew G. Knepley PetscCheck(dof == P4EST_CHILDREN * coordDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Need coordinates at the corners: (dof) %" PetscInt_FMT " != %d * %" PetscInt_FMT " (sdim)", dof, P4EST_CHILDREN, coordDim); 17770a96aa3bSJed Brown for (v = 0; v < P4EST_CHILDREN; v++) { 17780a96aa3bSJed Brown PetscInt i, lim = PetscMin(3, coordDim); 17790a96aa3bSJed Brown PetscInt p4estVert = PetscVertToP4estVert[v]; 17800a96aa3bSJed Brown 17810a96aa3bSJed Brown conn->tree_to_vertex[P4EST_CHILDREN * (c - cStart) + v] = P4EST_CHILDREN * (c - cStart) + v; 17820a96aa3bSJed Brown /* p4est vertices are always embedded in R^3 */ 17830a96aa3bSJed Brown for (i = 0; i < 3; i++) conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = 0.; 17840a96aa3bSJed Brown for (i = 0; i < lim; i++) conn->vertices[3 * (P4EST_CHILDREN * (c - cStart) + p4estVert) + i] = PetscRealPart(cellCoords[v * coordDim + i]); 17850a96aa3bSJed Brown } 17866858538eSMatthew G. Knepley PetscCall(DMPlexRestoreCellCoordinates(dm, c, &isDG, &dof, &array, &cellCoords)); 17870a96aa3bSJed Brown } 17880a96aa3bSJed Brown } 17890a96aa3bSJed Brown 17900a96aa3bSJed Brown #if defined(P4EST_ENABLE_DEBUG) 179108401ef6SPierre Jolivet PetscCheck(p4est_connectivity_is_valid(conn), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Plex to p4est conversion failed"); 17920a96aa3bSJed Brown #endif 17930a96aa3bSJed Brown 17940a96aa3bSJed Brown *connOut = conn; 17950a96aa3bSJed Brown 17960a96aa3bSJed Brown *tree_face_to_uniq = ttf; 17973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17980a96aa3bSJed Brown } 17990a96aa3bSJed Brown 1800d71ae5a4SJacob Faibussowitsch static PetscErrorCode locidx_to_PetscInt(sc_array_t *array) 1801d71ae5a4SJacob Faibussowitsch { 18020a96aa3bSJed Brown sc_array_t *newarray; 18030a96aa3bSJed Brown size_t zz, count = array->elem_count; 18040a96aa3bSJed Brown 18050a96aa3bSJed Brown PetscFunctionBegin; 180608401ef6SPierre Jolivet PetscCheck(array->elem_size == sizeof(p4est_locidx_t), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Wrong locidx size"); 18070a96aa3bSJed Brown 18083ba16761SJacob Faibussowitsch if (sizeof(p4est_locidx_t) == sizeof(PetscInt)) PetscFunctionReturn(PETSC_SUCCESS); 18090a96aa3bSJed Brown 18100a96aa3bSJed Brown newarray = sc_array_new_size(sizeof(PetscInt), array->elem_count); 18110a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 18120a96aa3bSJed Brown p4est_locidx_t il = *((p4est_locidx_t *)sc_array_index(array, zz)); 18130a96aa3bSJed Brown PetscInt *ip = (PetscInt *)sc_array_index(newarray, zz); 18140a96aa3bSJed Brown 18150a96aa3bSJed Brown *ip = (PetscInt)il; 18160a96aa3bSJed Brown } 18170a96aa3bSJed Brown 18180a96aa3bSJed Brown sc_array_reset(array); 18190a96aa3bSJed Brown sc_array_init_size(array, sizeof(PetscInt), count); 18200a96aa3bSJed Brown sc_array_copy(array, newarray); 18210a96aa3bSJed Brown sc_array_destroy(newarray); 18223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18230a96aa3bSJed Brown } 18240a96aa3bSJed Brown 1825d71ae5a4SJacob Faibussowitsch static PetscErrorCode coords_double_to_PetscScalar(sc_array_t *array, PetscInt dim) 1826d71ae5a4SJacob Faibussowitsch { 18270a96aa3bSJed Brown sc_array_t *newarray; 18280a96aa3bSJed Brown size_t zz, count = array->elem_count; 18290a96aa3bSJed Brown 18300a96aa3bSJed Brown PetscFunctionBegin; 18311dca8a05SBarry Smith PetscCheck(array->elem_size == 3 * sizeof(double), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Wrong coordinate size"); 18320a96aa3bSJed Brown #if !defined(PETSC_USE_COMPLEX) 18333ba16761SJacob Faibussowitsch if (sizeof(double) == sizeof(PetscScalar) && dim == 3) PetscFunctionReturn(PETSC_SUCCESS); 18340a96aa3bSJed Brown #endif 18350a96aa3bSJed Brown 18360a96aa3bSJed Brown newarray = sc_array_new_size(dim * sizeof(PetscScalar), array->elem_count); 18370a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 18380a96aa3bSJed Brown int i; 18390a96aa3bSJed Brown double *id = (double *)sc_array_index(array, zz); 18400a96aa3bSJed Brown PetscScalar *ip = (PetscScalar *)sc_array_index(newarray, zz); 18410a96aa3bSJed Brown 18420a96aa3bSJed Brown for (i = 0; i < dim; i++) ip[i] = 0.; 18430a96aa3bSJed Brown for (i = 0; i < PetscMin(dim, 3); i++) ip[i] = (PetscScalar)id[i]; 18440a96aa3bSJed Brown } 18450a96aa3bSJed Brown 18460a96aa3bSJed Brown sc_array_reset(array); 18470a96aa3bSJed Brown sc_array_init_size(array, dim * sizeof(PetscScalar), count); 18480a96aa3bSJed Brown sc_array_copy(array, newarray); 18490a96aa3bSJed Brown sc_array_destroy(newarray); 18503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18510a96aa3bSJed Brown } 18520a96aa3bSJed Brown 1853d71ae5a4SJacob Faibussowitsch static PetscErrorCode locidx_pair_to_PetscSFNode(sc_array_t *array) 1854d71ae5a4SJacob Faibussowitsch { 18550a96aa3bSJed Brown sc_array_t *newarray; 18560a96aa3bSJed Brown size_t zz, count = array->elem_count; 18570a96aa3bSJed Brown 18580a96aa3bSJed Brown PetscFunctionBegin; 18591dca8a05SBarry Smith PetscCheck(array->elem_size == 2 * sizeof(p4est_locidx_t), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Wrong locidx size"); 18600a96aa3bSJed Brown 18610a96aa3bSJed Brown newarray = sc_array_new_size(sizeof(PetscSFNode), array->elem_count); 18620a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 18630a96aa3bSJed Brown p4est_locidx_t *il = (p4est_locidx_t *)sc_array_index(array, zz); 18640a96aa3bSJed Brown PetscSFNode *ip = (PetscSFNode *)sc_array_index(newarray, zz); 18650a96aa3bSJed Brown 18660a96aa3bSJed Brown ip->rank = (PetscInt)il[0]; 18670a96aa3bSJed Brown ip->index = (PetscInt)il[1]; 18680a96aa3bSJed Brown } 18690a96aa3bSJed Brown 18700a96aa3bSJed Brown sc_array_reset(array); 18710a96aa3bSJed Brown sc_array_init_size(array, sizeof(PetscSFNode), count); 18720a96aa3bSJed Brown sc_array_copy(array, newarray); 18730a96aa3bSJed Brown sc_array_destroy(newarray); 18743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18750a96aa3bSJed Brown } 18760a96aa3bSJed Brown 1877d71ae5a4SJacob Faibussowitsch static PetscErrorCode P4estToPlex_Local(p4est_t *p4est, DM *plex) 1878d71ae5a4SJacob Faibussowitsch { 18790a96aa3bSJed Brown PetscFunctionBegin; 18800a96aa3bSJed Brown { 18810a96aa3bSJed Brown sc_array_t *points_per_dim = sc_array_new(sizeof(p4est_locidx_t)); 18820a96aa3bSJed Brown sc_array_t *cone_sizes = sc_array_new(sizeof(p4est_locidx_t)); 18830a96aa3bSJed Brown sc_array_t *cones = sc_array_new(sizeof(p4est_locidx_t)); 18840a96aa3bSJed Brown sc_array_t *cone_orientations = sc_array_new(sizeof(p4est_locidx_t)); 18850a96aa3bSJed Brown sc_array_t *coords = sc_array_new(3 * sizeof(double)); 18860a96aa3bSJed Brown sc_array_t *children = sc_array_new(sizeof(p4est_locidx_t)); 18870a96aa3bSJed Brown sc_array_t *parents = sc_array_new(sizeof(p4est_locidx_t)); 18880a96aa3bSJed Brown sc_array_t *childids = sc_array_new(sizeof(p4est_locidx_t)); 18890a96aa3bSJed Brown sc_array_t *leaves = sc_array_new(sizeof(p4est_locidx_t)); 18900a96aa3bSJed Brown sc_array_t *remotes = sc_array_new(2 * sizeof(p4est_locidx_t)); 18910a96aa3bSJed Brown p4est_locidx_t first_local_quad; 18920a96aa3bSJed Brown 1893792fecdfSBarry Smith PetscCallP4est(p4est_get_plex_data, (p4est, P4EST_CONNECT_FULL, 0, &first_local_quad, points_per_dim, cone_sizes, cones, cone_orientations, coords, children, parents, childids, leaves, remotes)); 18940a96aa3bSJed Brown 18959566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(points_per_dim)); 18969566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_sizes)); 18979566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cones)); 18989566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_orientations)); 18999566063dSJacob Faibussowitsch PetscCall(coords_double_to_PetscScalar(coords, P4EST_DIM)); 19000a96aa3bSJed Brown 19019566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(PETSC_COMM_SELF, plex)); 19029566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*plex, P4EST_DIM)); 19039566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromDAG(*plex, P4EST_DIM, (PetscInt *)points_per_dim->array, (PetscInt *)cone_sizes->array, (PetscInt *)cones->array, (PetscInt *)cone_orientations->array, (PetscScalar *)coords->array)); 19049566063dSJacob Faibussowitsch PetscCall(DMPlexConvertOldOrientations_Internal(*plex)); 19050a96aa3bSJed Brown sc_array_destroy(points_per_dim); 19060a96aa3bSJed Brown sc_array_destroy(cone_sizes); 19070a96aa3bSJed Brown sc_array_destroy(cones); 19080a96aa3bSJed Brown sc_array_destroy(cone_orientations); 19090a96aa3bSJed Brown sc_array_destroy(coords); 19100a96aa3bSJed Brown sc_array_destroy(children); 19110a96aa3bSJed Brown sc_array_destroy(parents); 19120a96aa3bSJed Brown sc_array_destroy(childids); 19130a96aa3bSJed Brown sc_array_destroy(leaves); 19140a96aa3bSJed Brown sc_array_destroy(remotes); 19150a96aa3bSJed Brown } 19163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19170a96aa3bSJed Brown } 19180a96aa3bSJed Brown 19190a96aa3bSJed Brown #define DMReferenceTreeGetChildSymmetry_pforest _append_pforest(DMReferenceTreeGetChildSymmetry) 1920d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMReferenceTreeGetChildSymmetry_pforest(DM dm, PetscInt parent, PetscInt parentOrientA, PetscInt childOrientA, PetscInt childA, PetscInt parentOrientB, PetscInt *childOrientB, PetscInt *childB) 1921d71ae5a4SJacob Faibussowitsch { 19220a96aa3bSJed Brown PetscInt coneSize, dStart, dEnd, vStart, vEnd, dim, ABswap, oAvert, oBvert, ABswapVert; 19230a96aa3bSJed Brown 19240a96aa3bSJed Brown PetscFunctionBegin; 19250a96aa3bSJed Brown if (parentOrientA == parentOrientB) { 19260a96aa3bSJed Brown if (childOrientB) *childOrientB = childOrientA; 19270a96aa3bSJed Brown if (childB) *childB = childA; 19283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19290a96aa3bSJed Brown } 19309566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 19316aad120cSJose E. Roman if (childA >= vStart && childA < vEnd) { /* vertices (always in the middle) are invariant under rotation */ 19320a96aa3bSJed Brown if (childOrientB) *childOrientB = 0; 19330a96aa3bSJed Brown if (childB) *childB = childA; 19343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19350a96aa3bSJed Brown } 19360a96aa3bSJed Brown for (dim = 0; dim < 3; dim++) { 19379566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dim, &dStart, &dEnd)); 19380a96aa3bSJed Brown if (parent >= dStart && parent <= dEnd) break; 19390a96aa3bSJed Brown } 194063a3b9bcSJacob Faibussowitsch PetscCheck(dim <= 2, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot perform child symmetry for %" PetscInt_FMT "-cells", dim); 194128b400f6SJacob Faibussowitsch PetscCheck(dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A vertex has no children"); 19420a96aa3bSJed Brown if (childA < dStart || childA >= dEnd) { /* a 1-cell in a 2-cell */ 19430a96aa3bSJed Brown /* this is a lower-dimensional child: bootstrap */ 19440a96aa3bSJed Brown PetscInt size, i, sA = -1, sB, sOrientB, sConeSize; 19450a96aa3bSJed Brown const PetscInt *supp, *coneA, *coneB, *oA, *oB; 19460a96aa3bSJed Brown 19479566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, childA, &size)); 19489566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, childA, &supp)); 19490a96aa3bSJed Brown 19500a96aa3bSJed Brown /* find a point sA in supp(childA) that has the same parent */ 19510a96aa3bSJed Brown for (i = 0; i < size; i++) { 19520a96aa3bSJed Brown PetscInt sParent; 19530a96aa3bSJed Brown 19540a96aa3bSJed Brown sA = supp[i]; 19550a96aa3bSJed Brown if (sA == parent) continue; 19569566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(dm, sA, &sParent, NULL)); 19570a96aa3bSJed Brown if (sParent == parent) break; 19580a96aa3bSJed Brown } 195908401ef6SPierre Jolivet PetscCheck(i != size, PETSC_COMM_SELF, PETSC_ERR_PLIB, "could not find support in children"); 19600a96aa3bSJed Brown /* find out which point sB is in an equivalent position to sA under 19610a96aa3bSJed Brown * parentOrientB */ 19629566063dSJacob Faibussowitsch PetscCall(DMReferenceTreeGetChildSymmetry_pforest(dm, parent, parentOrientA, 0, sA, parentOrientB, &sOrientB, &sB)); 19639566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, sA, &sConeSize)); 19649566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, sA, &coneA)); 19659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, sB, &coneB)); 19669566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, sA, &oA)); 19679566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, sB, &oB)); 19680a96aa3bSJed Brown /* step through the cone of sA in natural order */ 19690a96aa3bSJed Brown for (i = 0; i < sConeSize; i++) { 19700a96aa3bSJed Brown if (coneA[i] == childA) { 19710a96aa3bSJed Brown /* if childA is at position i in coneA, 19720a96aa3bSJed Brown * then we want the point that is at sOrientB*i in coneB */ 19730a96aa3bSJed Brown PetscInt j = (sOrientB >= 0) ? ((sOrientB + i) % sConeSize) : ((sConeSize - (sOrientB + 1) - i) % sConeSize); 19740a96aa3bSJed Brown if (childB) *childB = coneB[j]; 19750a96aa3bSJed Brown if (childOrientB) { 19760a96aa3bSJed Brown DMPolytopeType ct; 19770a96aa3bSJed Brown PetscInt oBtrue; 19780a96aa3bSJed Brown 19799566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, childA, &coneSize)); 19800a96aa3bSJed Brown /* compose sOrientB and oB[j] */ 19811dca8a05SBarry Smith PetscCheck(coneSize == 0 || coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Expected a vertex or an edge"); 19820a96aa3bSJed Brown ct = coneSize ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 19830a96aa3bSJed Brown /* we may have to flip an edge */ 19840a96aa3bSJed Brown oBtrue = (sOrientB >= 0) ? oB[j] : DMPolytopeTypeComposeOrientationInv(ct, -1, oB[j]); 19850a96aa3bSJed Brown oBtrue = DMPolytopeConvertNewOrientation_Internal(ct, oBtrue); 19860a96aa3bSJed Brown ABswap = DihedralSwap(coneSize, DMPolytopeConvertNewOrientation_Internal(ct, oA[i]), oBtrue); 19870a96aa3bSJed Brown *childOrientB = DihedralCompose(coneSize, childOrientA, ABswap); 19880a96aa3bSJed Brown } 19890a96aa3bSJed Brown break; 19900a96aa3bSJed Brown } 19910a96aa3bSJed Brown } 199208401ef6SPierre Jolivet PetscCheck(i != sConeSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "support cone mismatch"); 19933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19940a96aa3bSJed Brown } 19950a96aa3bSJed Brown /* get the cone size and symmetry swap */ 19969566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, parent, &coneSize)); 19970a96aa3bSJed Brown ABswap = DihedralSwap(coneSize, parentOrientA, parentOrientB); 19980a96aa3bSJed Brown if (dim == 2) { 19990a96aa3bSJed Brown /* orientations refer to cones: we want them to refer to vertices: 20000a96aa3bSJed Brown * if it's a rotation, they are the same, but if the order is reversed, a 20010a96aa3bSJed Brown * permutation that puts side i first does *not* put vertex i first */ 20020a96aa3bSJed Brown oAvert = (parentOrientA >= 0) ? parentOrientA : -((-parentOrientA % coneSize) + 1); 20030a96aa3bSJed Brown oBvert = (parentOrientB >= 0) ? parentOrientB : -((-parentOrientB % coneSize) + 1); 20040a96aa3bSJed Brown ABswapVert = DihedralSwap(coneSize, oAvert, oBvert); 20050a96aa3bSJed Brown } else { 20060a96aa3bSJed Brown oAvert = parentOrientA; 20070a96aa3bSJed Brown oBvert = parentOrientB; 20080a96aa3bSJed Brown ABswapVert = ABswap; 20090a96aa3bSJed Brown } 20100a96aa3bSJed Brown if (childB) { 20110a96aa3bSJed Brown /* assume that each child corresponds to a vertex, in the same order */ 20120a96aa3bSJed Brown PetscInt p, posA = -1, numChildren, i; 20130a96aa3bSJed Brown const PetscInt *children; 20140a96aa3bSJed Brown 20150a96aa3bSJed Brown /* count which position the child is in */ 20169566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, parent, &numChildren, &children)); 20170a96aa3bSJed Brown for (i = 0; i < numChildren; i++) { 20180a96aa3bSJed Brown p = children[i]; 20190a96aa3bSJed Brown if (p == childA) { 20200a96aa3bSJed Brown if (dim == 1) { 20210a96aa3bSJed Brown posA = i; 20220a96aa3bSJed Brown } else { /* 2D Morton to rotation */ 20230a96aa3bSJed Brown posA = (i & 2) ? (i ^ 1) : i; 20240a96aa3bSJed Brown } 20250a96aa3bSJed Brown break; 20260a96aa3bSJed Brown } 20270a96aa3bSJed Brown } 20280a96aa3bSJed Brown if (posA >= coneSize) { 20290a96aa3bSJed Brown SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find childA in children of parent"); 20300a96aa3bSJed Brown } else { 20310a96aa3bSJed Brown /* figure out position B by applying ABswapVert */ 20320a96aa3bSJed Brown PetscInt posB, childIdB; 20330a96aa3bSJed Brown 20340a96aa3bSJed Brown posB = (ABswapVert >= 0) ? ((ABswapVert + posA) % coneSize) : ((coneSize - (ABswapVert + 1) - posA) % coneSize); 20350a96aa3bSJed Brown if (dim == 1) { 20360a96aa3bSJed Brown childIdB = posB; 20370a96aa3bSJed Brown } else { /* 2D rotation to Morton */ 20380a96aa3bSJed Brown childIdB = (posB & 2) ? (posB ^ 1) : posB; 20390a96aa3bSJed Brown } 20400a96aa3bSJed Brown if (childB) *childB = children[childIdB]; 20410a96aa3bSJed Brown } 20420a96aa3bSJed Brown } 20430a96aa3bSJed Brown if (childOrientB) *childOrientB = DihedralCompose(coneSize, childOrientA, ABswap); 20443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20450a96aa3bSJed Brown } 20460a96aa3bSJed Brown 20470a96aa3bSJed Brown #define DMCreateReferenceTree_pforest _append_pforest(DMCreateReferenceTree) 2048d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateReferenceTree_pforest(MPI_Comm comm, DM *dm) 2049d71ae5a4SJacob Faibussowitsch { 20500a96aa3bSJed Brown p4est_connectivity_t *refcube; 20510a96aa3bSJed Brown p4est_t *root, *refined; 20520a96aa3bSJed Brown DM dmRoot, dmRefined; 20530a96aa3bSJed Brown DM_Plex *mesh; 20540a96aa3bSJed Brown PetscMPIInt rank; 205566c0a4b5SToby Isaac #if defined(PETSC_HAVE_MPIUNI) 205666c0a4b5SToby Isaac sc_MPI_Comm comm_self = sc_MPI_COMM_SELF; 205766c0a4b5SToby Isaac #else 205866c0a4b5SToby Isaac MPI_Comm comm_self = PETSC_COMM_SELF; 205966c0a4b5SToby Isaac #endif 20600a96aa3bSJed Brown 20610a96aa3bSJed Brown PetscFunctionBegin; 2062792fecdfSBarry Smith PetscCallP4estReturn(refcube, p4est_connectivity_new_byname, ("unit")); 20630a96aa3bSJed Brown { /* [-1,1]^d geometry */ 20640a96aa3bSJed Brown PetscInt i, j; 20650a96aa3bSJed Brown 20660a96aa3bSJed Brown for (i = 0; i < P4EST_CHILDREN; i++) { 20670a96aa3bSJed Brown for (j = 0; j < 3; j++) { 20680a96aa3bSJed Brown refcube->vertices[3 * i + j] *= 2.; 20690a96aa3bSJed Brown refcube->vertices[3 * i + j] -= 1.; 20700a96aa3bSJed Brown } 20710a96aa3bSJed Brown } 20720a96aa3bSJed Brown } 2073792fecdfSBarry Smith PetscCallP4estReturn(root, p4est_new, (comm_self, refcube, 0, NULL, NULL)); 2074792fecdfSBarry Smith PetscCallP4estReturn(refined, p4est_new_ext, (comm_self, refcube, 0, 1, 1, 0, NULL, NULL)); 20759566063dSJacob Faibussowitsch PetscCall(P4estToPlex_Local(root, &dmRoot)); 20769566063dSJacob Faibussowitsch PetscCall(P4estToPlex_Local(refined, &dmRefined)); 20770a96aa3bSJed Brown { 20780a96aa3bSJed Brown #if !defined(P4_TO_P8) 20790a96aa3bSJed Brown PetscInt nPoints = 25; 20809371c9d4SSatish Balay PetscInt perm[25] = {0, 1, 2, 3, 4, 12, 8, 14, 6, 9, 15, 5, 13, 10, 7, 11, 16, 22, 20, 24, 17, 21, 18, 23, 19}; 20819371c9d4SSatish Balay PetscInt ident[25] = {0, 0, 0, 0, 1, 1, 2, 2, 3, 3, 4, 4, 0, 0, 0, 0, 5, 6, 7, 8, 1, 2, 3, 4, 0}; 20820a96aa3bSJed Brown #else 20830a96aa3bSJed Brown PetscInt nPoints = 125; 20849371c9d4SSatish Balay PetscInt perm[125] = {0, 1, 2, 3, 4, 5, 6, 7, 8, 32, 16, 36, 24, 40, 12, 17, 37, 25, 41, 9, 33, 20, 26, 42, 13, 21, 27, 43, 10, 34, 18, 38, 28, 14, 19, 39, 29, 11, 35, 22, 30, 15, 20859371c9d4SSatish Balay 23, 31, 44, 84, 76, 92, 52, 86, 68, 94, 60, 78, 70, 96, 45, 85, 77, 93, 54, 72, 62, 74, 46, 80, 53, 87, 69, 95, 64, 82, 47, 81, 55, 73, 66, 48, 88, 56, 90, 61, 79, 71, 20869371c9d4SSatish Balay 97, 49, 89, 58, 63, 75, 50, 57, 91, 65, 83, 51, 59, 67, 98, 106, 110, 122, 114, 120, 118, 124, 99, 111, 115, 119, 100, 107, 116, 121, 101, 117, 102, 108, 112, 123, 103, 113, 104, 109, 105}; 20879371c9d4SSatish Balay PetscInt ident[125] = {0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7, 7, 8, 8, 9, 9, 10, 10, 11, 11, 12, 12, 13, 13, 14, 14, 15, 15, 16, 20889371c9d4SSatish Balay 16, 17, 17, 18, 18, 1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 6, 0, 0, 0, 0, 0, 0, 19, 20, 21, 22, 23, 24, 25, 26, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 1, 2, 3, 4, 5, 6, 0}; 20890a96aa3bSJed Brown 20900a96aa3bSJed Brown #endif 20910a96aa3bSJed Brown IS permIS; 20920a96aa3bSJed Brown DM dmPerm; 20930a96aa3bSJed Brown 20949566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nPoints, perm, PETSC_USE_POINTER, &permIS)); 20959566063dSJacob Faibussowitsch PetscCall(DMPlexPermute(dmRefined, permIS, &dmPerm)); 20960a96aa3bSJed Brown if (dmPerm) { 20979566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRefined)); 20980a96aa3bSJed Brown dmRefined = dmPerm; 20990a96aa3bSJed Brown } 21009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&permIS)); 21010a96aa3bSJed Brown { 21020a96aa3bSJed Brown PetscInt p; 21039566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmRoot, "identity")); 21049566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmRefined, "identity")); 210548a46eb9SPierre Jolivet for (p = 0; p < P4EST_INSUL; p++) PetscCall(DMSetLabelValue(dmRoot, "identity", p, p)); 210648a46eb9SPierre Jolivet for (p = 0; p < nPoints; p++) PetscCall(DMSetLabelValue(dmRefined, "identity", p, ident[p])); 21070a96aa3bSJed Brown } 21080a96aa3bSJed Brown } 21099566063dSJacob Faibussowitsch PetscCall(DMPlexCreateReferenceTree_Union(dmRoot, dmRefined, "identity", dm)); 21100a96aa3bSJed Brown mesh = (DM_Plex *)(*dm)->data; 21110a96aa3bSJed Brown mesh->getchildsymmetry = DMReferenceTreeGetChildSymmetry_pforest; 21129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 21130a96aa3bSJed Brown if (rank == 0) { 21149566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmRoot, NULL, "-dm_p4est_ref_root_view")); 21159566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmRefined, NULL, "-dm_p4est_ref_refined_view")); 21169566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmRefined, NULL, "-dm_p4est_ref_tree_view")); 21170a96aa3bSJed Brown } 21189566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRefined)); 21199566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmRoot)); 2120792fecdfSBarry Smith PetscCallP4est(p4est_destroy, (refined)); 2121792fecdfSBarry Smith PetscCallP4est(p4est_destroy, (root)); 2122792fecdfSBarry Smith PetscCallP4est(p4est_connectivity_destroy, (refcube)); 21233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21240a96aa3bSJed Brown } 21250a96aa3bSJed Brown 2126d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMShareDiscretization(DM dmA, DM dmB) 2127d71ae5a4SJacob Faibussowitsch { 21280a96aa3bSJed Brown void *ctx; 21290a96aa3bSJed Brown PetscInt num; 21300a96aa3bSJed Brown PetscReal val; 21310a96aa3bSJed Brown 21320a96aa3bSJed Brown PetscFunctionBegin; 21339566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dmA, &ctx)); 21349566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(dmB, ctx)); 21359566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dmA, dmB)); 21369566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dmA, &num, &val)); 21379566063dSJacob Faibussowitsch PetscCall(DMSetOutputSequenceNumber(dmB, num, val)); 21380a96aa3bSJed Brown if (dmB->localSection != dmA->localSection || dmB->globalSection != dmA->globalSection) { 21399566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(dmB)); 21409566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->localSection)); 2141*f4f49eeaSPierre Jolivet PetscCall(PetscSectionDestroy(&dmB->localSection)); 21420a96aa3bSJed Brown dmB->localSection = dmA->localSection; 21439566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(dmB)); 21449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->globalSection)); 2145*f4f49eeaSPierre Jolivet PetscCall(PetscSectionDestroy(&dmB->globalSection)); 21460a96aa3bSJed Brown dmB->globalSection = dmA->globalSection; 21479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.section)); 2148*f4f49eeaSPierre Jolivet PetscCall(PetscSectionDestroy(&dmB->defaultConstraint.section)); 21493b8ba7d1SJed Brown dmB->defaultConstraint.section = dmA->defaultConstraint.section; 21509566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->defaultConstraint.mat)); 2151*f4f49eeaSPierre Jolivet PetscCall(MatDestroy(&dmB->defaultConstraint.mat)); 21523b8ba7d1SJed Brown dmB->defaultConstraint.mat = dmA->defaultConstraint.mat; 21539566063dSJacob Faibussowitsch if (dmA->map) PetscCall(PetscLayoutReference(dmA->map, &dmB->map)); 21540a96aa3bSJed Brown } 21550a96aa3bSJed Brown if (dmB->sectionSF != dmA->sectionSF) { 21569566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dmA->sectionSF)); 21579566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dmB->sectionSF)); 21580a96aa3bSJed Brown dmB->sectionSF = dmA->sectionSF; 21590a96aa3bSJed Brown } 21603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21610a96aa3bSJed Brown } 21620a96aa3bSJed Brown 21630a96aa3bSJed Brown /* Get an SF that broadcasts a coarse-cell covering of the local fine cells */ 2164d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetCellCoveringSF(MPI_Comm comm, p4est_t *p4estC, p4est_t *p4estF, PetscInt cStart, PetscInt cEnd, PetscSF *coveringSF) 2165d71ae5a4SJacob Faibussowitsch { 21660a96aa3bSJed Brown PetscInt startF, endF, startC, endC, p, nLeaves; 21670a96aa3bSJed Brown PetscSFNode *leaves; 21680a96aa3bSJed Brown PetscSF sf; 21690a96aa3bSJed Brown PetscInt *recv, *send; 21700a96aa3bSJed Brown PetscMPIInt tag; 21710a96aa3bSJed Brown MPI_Request *recvReqs, *sendReqs; 21720a96aa3bSJed Brown PetscSection section; 21730a96aa3bSJed Brown 21740a96aa3bSJed Brown PetscFunctionBegin; 21759566063dSJacob Faibussowitsch PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize, p4estC->mpirank, p4estF, p4estC, &startC, &endC)); 21769566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2 * (endC - startC), &recv, endC - startC, &recvReqs)); 21779566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tag)); 21780a96aa3bSJed Brown for (p = startC; p < endC; p++) { 21790a96aa3bSJed Brown recvReqs[p - startC] = MPI_REQUEST_NULL; /* just in case we don't initiate a receive */ 21800a96aa3bSJed Brown if (p4estC->global_first_quadrant[p] == p4estC->global_first_quadrant[p + 1]) { /* empty coarse partition */ 21810a96aa3bSJed Brown recv[2 * (p - startC)] = 0; 21820a96aa3bSJed Brown recv[2 * (p - startC) + 1] = 0; 21830a96aa3bSJed Brown continue; 21840a96aa3bSJed Brown } 21850a96aa3bSJed Brown 21869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(&recv[2 * (p - startC)], 2, MPIU_INT, p, tag, comm, &recvReqs[p - startC])); 21870a96aa3bSJed Brown } 21889566063dSJacob Faibussowitsch PetscCall(DMPforestComputeOverlappingRanks(p4estC->mpisize, p4estC->mpirank, p4estC, p4estF, &startF, &endF)); 21899566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2 * (endF - startF), &send, endF - startF, &sendReqs)); 21900a96aa3bSJed Brown /* count the quadrants rank will send to each of [startF,endF) */ 21910a96aa3bSJed Brown for (p = startF; p < endF; p++) { 21920a96aa3bSJed Brown p4est_quadrant_t *myFineStart = &p4estF->global_first_position[p]; 21930a96aa3bSJed Brown p4est_quadrant_t *myFineEnd = &p4estF->global_first_position[p + 1]; 21940a96aa3bSJed Brown PetscInt tStart = (PetscInt)myFineStart->p.which_tree; 21950a96aa3bSJed Brown PetscInt tEnd = (PetscInt)myFineEnd->p.which_tree; 21960a96aa3bSJed Brown PetscInt firstCell = -1, lastCell = -1; 21970a96aa3bSJed Brown p4est_tree_t *treeStart = &(((p4est_tree_t *)p4estC->trees->array)[tStart]); 21980a96aa3bSJed Brown p4est_tree_t *treeEnd = (size_t)tEnd < p4estC->trees->elem_count ? &(((p4est_tree_t *)p4estC->trees->array)[tEnd]) : NULL; 21990a96aa3bSJed Brown ssize_t overlapIndex; 22000a96aa3bSJed Brown 22010a96aa3bSJed Brown sendReqs[p - startF] = MPI_REQUEST_NULL; /* just in case we don't initiate a send */ 22020a96aa3bSJed Brown if (p4estF->global_first_quadrant[p] == p4estF->global_first_quadrant[p + 1]) continue; 22030a96aa3bSJed Brown 22040a96aa3bSJed Brown /* locate myFineStart in (or before) a cell */ 22050a96aa3bSJed Brown if (treeStart->quadrants.elem_count) { 2206*f4f49eeaSPierre Jolivet PetscCallP4estReturn(overlapIndex, sc_array_bsearch, (&treeStart->quadrants, myFineStart, p4est_quadrant_disjoint)); 22070a96aa3bSJed Brown if (overlapIndex < 0) { 22080a96aa3bSJed Brown firstCell = 0; 22090a96aa3bSJed Brown } else { 22100a96aa3bSJed Brown firstCell = treeStart->quadrants_offset + overlapIndex; 22110a96aa3bSJed Brown } 22120a96aa3bSJed Brown } else { 22130a96aa3bSJed Brown firstCell = 0; 22140a96aa3bSJed Brown } 22150a96aa3bSJed Brown if (treeEnd && treeEnd->quadrants.elem_count) { 2216*f4f49eeaSPierre Jolivet PetscCallP4estReturn(overlapIndex, sc_array_bsearch, (&treeEnd->quadrants, myFineEnd, p4est_quadrant_disjoint)); 22170a96aa3bSJed Brown if (overlapIndex < 0) { /* all of this local section is overlapped */ 22180a96aa3bSJed Brown lastCell = p4estC->local_num_quadrants; 22190a96aa3bSJed Brown } else { 22200a96aa3bSJed Brown p4est_quadrant_t *container = &(((p4est_quadrant_t *)treeEnd->quadrants.array)[overlapIndex]); 22210a96aa3bSJed Brown p4est_quadrant_t first_desc; 22220a96aa3bSJed Brown int equal; 22230a96aa3bSJed Brown 2224792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_first_descendant, (container, &first_desc, P4EST_QMAXLEVEL)); 2225792fecdfSBarry Smith PetscCallP4estReturn(equal, p4est_quadrant_is_equal, (myFineEnd, &first_desc)); 22260a96aa3bSJed Brown if (equal) { 22270a96aa3bSJed Brown lastCell = treeEnd->quadrants_offset + overlapIndex; 22280a96aa3bSJed Brown } else { 22290a96aa3bSJed Brown lastCell = treeEnd->quadrants_offset + overlapIndex + 1; 22300a96aa3bSJed Brown } 22310a96aa3bSJed Brown } 22320a96aa3bSJed Brown } else { 22330a96aa3bSJed Brown lastCell = p4estC->local_num_quadrants; 22340a96aa3bSJed Brown } 22350a96aa3bSJed Brown send[2 * (p - startF)] = firstCell; 22360a96aa3bSJed Brown send[2 * (p - startF) + 1] = lastCell - firstCell; 22379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(&send[2 * (p - startF)], 2, MPIU_INT, p, tag, comm, &sendReqs[p - startF])); 22380a96aa3bSJed Brown } 22399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall((PetscMPIInt)(endC - startC), recvReqs, MPI_STATUSES_IGNORE)); 22409566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, §ion)); 22419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(section, startC, endC)); 22420a96aa3bSJed Brown for (p = startC; p < endC; p++) { 22430a96aa3bSJed Brown PetscInt numCells = recv[2 * (p - startC) + 1]; 22449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(section, p, numCells)); 22450a96aa3bSJed Brown } 22469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(section)); 22479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &nLeaves)); 22489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &leaves)); 22490a96aa3bSJed Brown for (p = startC; p < endC; p++) { 22500a96aa3bSJed Brown PetscInt firstCell = recv[2 * (p - startC)]; 22510a96aa3bSJed Brown PetscInt numCells = recv[2 * (p - startC) + 1]; 22520a96aa3bSJed Brown PetscInt off, i; 22530a96aa3bSJed Brown 22549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, p, &off)); 22550a96aa3bSJed Brown for (i = 0; i < numCells; i++) { 22560a96aa3bSJed Brown leaves[off + i].rank = p; 22570a96aa3bSJed Brown leaves[off + i].index = firstCell + i; 22580a96aa3bSJed Brown } 22590a96aa3bSJed Brown } 22609566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 22619566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, cEnd - cStart, nLeaves, NULL, PETSC_OWN_POINTER, leaves, PETSC_OWN_POINTER)); 22629566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ion)); 22639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall((PetscMPIInt)(endF - startF), sendReqs, MPI_STATUSES_IGNORE)); 22649566063dSJacob Faibussowitsch PetscCall(PetscFree2(send, sendReqs)); 22659566063dSJacob Faibussowitsch PetscCall(PetscFree2(recv, recvReqs)); 22660a96aa3bSJed Brown *coveringSF = sf; 22673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22680a96aa3bSJed Brown } 22690a96aa3bSJed Brown 22700a96aa3bSJed Brown /* closure points for locally-owned cells */ 2271d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetCellSFNodes(DM dm, PetscInt numClosureIndices, PetscInt *numClosurePoints, PetscSFNode **closurePoints, PetscBool redirect) 2272d71ae5a4SJacob Faibussowitsch { 22730a96aa3bSJed Brown PetscInt cStart, cEnd; 22740a96aa3bSJed Brown PetscInt count, c; 22750a96aa3bSJed Brown PetscMPIInt rank; 22760a96aa3bSJed Brown PetscInt closureSize = -1; 22770a96aa3bSJed Brown PetscInt *closure = NULL; 22780a96aa3bSJed Brown PetscSF pointSF; 22790a96aa3bSJed Brown PetscInt nleaves, nroots; 22800a96aa3bSJed Brown const PetscInt *ilocal; 22810a96aa3bSJed Brown const PetscSFNode *iremote; 22820a96aa3bSJed Brown DM plex; 22830a96aa3bSJed Brown DM_Forest *forest; 22840a96aa3bSJed Brown DM_Forest_pforest *pforest; 22850a96aa3bSJed Brown 22860a96aa3bSJed Brown PetscFunctionBegin; 22870a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 22880a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 22890a96aa3bSJed Brown cStart = pforest->cLocalStart; 22900a96aa3bSJed Brown cEnd = pforest->cLocalEnd; 22919566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 22929566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &pointSF)); 22939566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF, &nroots, &nleaves, &ilocal, &iremote)); 22940a96aa3bSJed Brown nleaves = PetscMax(0, nleaves); 22950a96aa3bSJed Brown nroots = PetscMax(0, nroots); 22960a96aa3bSJed Brown *numClosurePoints = numClosureIndices * (cEnd - cStart); 22979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numClosurePoints, closurePoints)); 22989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 22990a96aa3bSJed Brown for (c = cStart, count = 0; c < cEnd; c++) { 23000a96aa3bSJed Brown PetscInt i; 23019566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, c, PETSC_TRUE, &closureSize, &closure)); 23020a96aa3bSJed Brown 23030a96aa3bSJed Brown for (i = 0; i < numClosureIndices; i++, count++) { 23040a96aa3bSJed Brown PetscInt p = closure[2 * i]; 23050a96aa3bSJed Brown PetscInt loc = -1; 23060a96aa3bSJed Brown 23079566063dSJacob Faibussowitsch PetscCall(PetscFindInt(p, nleaves, ilocal, &loc)); 23080a96aa3bSJed Brown if (redirect && loc >= 0) { 23090a96aa3bSJed Brown (*closurePoints)[count].rank = iremote[loc].rank; 23100a96aa3bSJed Brown (*closurePoints)[count].index = iremote[loc].index; 23110a96aa3bSJed Brown } else { 23120a96aa3bSJed Brown (*closurePoints)[count].rank = rank; 23130a96aa3bSJed Brown (*closurePoints)[count].index = p; 23140a96aa3bSJed Brown } 23150a96aa3bSJed Brown } 23169566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, c, PETSC_TRUE, &closureSize, &closure)); 23170a96aa3bSJed Brown } 23183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23190a96aa3bSJed Brown } 23200a96aa3bSJed Brown 2321d71ae5a4SJacob Faibussowitsch static void MPIAPI DMPforestMaxSFNode(void *a, void *b, PetscMPIInt *len, MPI_Datatype *type) 2322d71ae5a4SJacob Faibussowitsch { 23230a96aa3bSJed Brown PetscMPIInt i; 23240a96aa3bSJed Brown 23250a96aa3bSJed Brown for (i = 0; i < *len; i++) { 23260a96aa3bSJed Brown PetscSFNode *A = (PetscSFNode *)a; 23270a96aa3bSJed Brown PetscSFNode *B = (PetscSFNode *)b; 23280a96aa3bSJed Brown 23290a96aa3bSJed Brown if (B->rank < 0) *B = *A; 23300a96aa3bSJed Brown } 23310a96aa3bSJed Brown } 23320a96aa3bSJed Brown 2333d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetTransferSF_Point(DM coarse, DM fine, PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[]) 2334d71ae5a4SJacob Faibussowitsch { 23350a96aa3bSJed Brown MPI_Comm comm; 23360a96aa3bSJed Brown PetscMPIInt rank, size; 23370a96aa3bSJed Brown DM_Forest_pforest *pforestC, *pforestF; 23380a96aa3bSJed Brown p4est_t *p4estC, *p4estF; 23390a96aa3bSJed Brown PetscInt numClosureIndices; 23400a96aa3bSJed Brown PetscInt numClosurePointsC, numClosurePointsF; 23410a96aa3bSJed Brown PetscSFNode *closurePointsC, *closurePointsF; 23420a96aa3bSJed Brown p4est_quadrant_t *coverQuads = NULL; 23430a96aa3bSJed Brown p4est_quadrant_t **treeQuads; 23440a96aa3bSJed Brown PetscInt *treeQuadCounts; 23450a96aa3bSJed Brown MPI_Datatype nodeType; 23460a96aa3bSJed Brown MPI_Datatype nodeClosureType; 23470a96aa3bSJed Brown MPI_Op sfNodeReduce; 23480a96aa3bSJed Brown p4est_topidx_t fltF, lltF, t; 23490a96aa3bSJed Brown DM plexC, plexF; 23500a96aa3bSJed Brown PetscInt pStartF, pEndF, pStartC, pEndC; 23510a96aa3bSJed Brown PetscBool saveInCoarse = PETSC_FALSE; 23520a96aa3bSJed Brown PetscBool saveInFine = PETSC_FALSE; 23530a96aa3bSJed Brown PetscBool formCids = (childIds != NULL) ? PETSC_TRUE : PETSC_FALSE; 23540a96aa3bSJed Brown PetscInt *cids = NULL; 23550a96aa3bSJed Brown 23560a96aa3bSJed Brown PetscFunctionBegin; 23570a96aa3bSJed Brown pforestC = (DM_Forest_pforest *)((DM_Forest *)coarse->data)->data; 23580a96aa3bSJed Brown pforestF = (DM_Forest_pforest *)((DM_Forest *)fine->data)->data; 23590a96aa3bSJed Brown p4estC = pforestC->forest; 23600a96aa3bSJed Brown p4estF = pforestF->forest; 236108401ef6SPierre Jolivet PetscCheck(pforestC->topo == pforestF->topo, PetscObjectComm((PetscObject)coarse), PETSC_ERR_ARG_INCOMP, "DM's must have the same base DM"); 23620a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)coarse); 23639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 23649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 23659566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(fine, &plexF)); 23669566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexF, &pStartF, &pEndF)); 23679566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(coarse, &plexC)); 23689566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexC, &pStartC, &pEndC)); 23690a96aa3bSJed Brown { /* check if the results have been cached */ 23700a96aa3bSJed Brown DM adaptCoarse, adaptFine; 23710a96aa3bSJed Brown 23729566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(coarse, &adaptCoarse)); 23739566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(fine, &adaptFine)); 23740a96aa3bSJed Brown if (adaptCoarse && adaptCoarse->data == fine->data) { /* coarse is adapted from fine */ 23750a96aa3bSJed Brown if (pforestC->pointSelfToAdaptSF) { 2376*f4f49eeaSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)pforestC->pointSelfToAdaptSF)); 23770a96aa3bSJed Brown *sf = pforestC->pointSelfToAdaptSF; 23780a96aa3bSJed Brown if (childIds) { 23799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &cids)); 23809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(cids, pforestC->pointSelfToAdaptCids, pEndF - pStartF)); 23810a96aa3bSJed Brown *childIds = cids; 23820a96aa3bSJed Brown } 23833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23840a96aa3bSJed Brown } else { 23850a96aa3bSJed Brown saveInCoarse = PETSC_TRUE; 23860a96aa3bSJed Brown formCids = PETSC_TRUE; 23870a96aa3bSJed Brown } 23880a96aa3bSJed Brown } else if (adaptFine && adaptFine->data == coarse->data) { /* fine is adapted from coarse */ 23890a96aa3bSJed Brown if (pforestF->pointAdaptToSelfSF) { 2390*f4f49eeaSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)pforestF->pointAdaptToSelfSF)); 23910a96aa3bSJed Brown *sf = pforestF->pointAdaptToSelfSF; 23920a96aa3bSJed Brown if (childIds) { 23939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &cids)); 23949566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(cids, pforestF->pointAdaptToSelfCids, pEndF - pStartF)); 23950a96aa3bSJed Brown *childIds = cids; 23960a96aa3bSJed Brown } 23973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23980a96aa3bSJed Brown } else { 23990a96aa3bSJed Brown saveInFine = PETSC_TRUE; 24000a96aa3bSJed Brown formCids = PETSC_TRUE; 24010a96aa3bSJed Brown } 24020a96aa3bSJed Brown } 24030a96aa3bSJed Brown } 24040a96aa3bSJed Brown 24050a96aa3bSJed Brown /* count the number of closure points that have dofs and create a list */ 24060a96aa3bSJed Brown numClosureIndices = P4EST_INSUL; 24070a96aa3bSJed Brown /* create the datatype */ 24089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(2, MPIU_INT, &nodeType)); 24099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&nodeType)); 24109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(DMPforestMaxSFNode, PETSC_FALSE, &sfNodeReduce)); 24119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(numClosureIndices * 2, MPIU_INT, &nodeClosureType)); 24129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&nodeClosureType)); 24130a96aa3bSJed Brown /* everything has to go through cells: for each cell, create a list of the sfnodes in its closure */ 24140a96aa3bSJed Brown /* get lists of closure point SF nodes for every cell */ 24159566063dSJacob Faibussowitsch PetscCall(DMPforestGetCellSFNodes(coarse, numClosureIndices, &numClosurePointsC, &closurePointsC, PETSC_TRUE)); 24169566063dSJacob Faibussowitsch PetscCall(DMPforestGetCellSFNodes(fine, numClosureIndices, &numClosurePointsF, &closurePointsF, PETSC_FALSE)); 24170a96aa3bSJed Brown /* create pointers for tree lists */ 24180a96aa3bSJed Brown fltF = p4estF->first_local_tree; 24190a96aa3bSJed Brown lltF = p4estF->last_local_tree; 24209566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(lltF + 1 - fltF, &treeQuads, lltF + 1 - fltF, &treeQuadCounts)); 24210a96aa3bSJed Brown /* if the partitions don't match, ship the coarse to cover the fine */ 24220a96aa3bSJed Brown if (size > 1) { 24230a96aa3bSJed Brown PetscInt p; 24240a96aa3bSJed Brown 24250a96aa3bSJed Brown for (p = 0; p < size; p++) { 24260a96aa3bSJed Brown int equal; 24270a96aa3bSJed Brown 2428792fecdfSBarry Smith PetscCallP4estReturn(equal, p4est_quadrant_is_equal_piggy, (&p4estC->global_first_position[p], &p4estF->global_first_position[p])); 24290a96aa3bSJed Brown if (!equal) break; 24300a96aa3bSJed Brown } 24310a96aa3bSJed Brown if (p < size) { /* non-matching distribution: send the coarse to cover the fine */ 24320a96aa3bSJed Brown PetscInt cStartC, cEndC; 24330a96aa3bSJed Brown PetscSF coveringSF; 24340a96aa3bSJed Brown PetscInt nleaves; 24350a96aa3bSJed Brown PetscInt count; 24360a96aa3bSJed Brown PetscSFNode *newClosurePointsC; 24370a96aa3bSJed Brown p4est_quadrant_t *coverQuadsSend; 24380a96aa3bSJed Brown p4est_topidx_t fltC = p4estC->first_local_tree; 24390a96aa3bSJed Brown p4est_topidx_t lltC = p4estC->last_local_tree; 24400a96aa3bSJed Brown p4est_topidx_t t; 24410a96aa3bSJed Brown PetscMPIInt blockSizes[4] = {P4EST_DIM, 2, 1, 1}; 24429371c9d4SSatish Balay MPI_Aint blockOffsets[4] = {offsetof(p4est_quadrant_t, x), offsetof(p4est_quadrant_t, level), offsetof(p4est_quadrant_t, pad16), offsetof(p4est_quadrant_t, p)}; 24430a96aa3bSJed Brown MPI_Datatype blockTypes[4] = {MPI_INT32_T, MPI_INT8_T, MPI_INT16_T, MPI_INT32_T /* p.which_tree */}; 24440a96aa3bSJed Brown MPI_Datatype quadStruct, quadType; 24450a96aa3bSJed Brown 24469566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plexC, 0, &cStartC, &cEndC)); 24479566063dSJacob Faibussowitsch PetscCall(DMPforestGetCellCoveringSF(comm, p4estC, p4estF, pforestC->cLocalStart, pforestC->cLocalEnd, &coveringSF)); 24489566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coveringSF, NULL, &nleaves, NULL, NULL)); 24499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numClosureIndices * nleaves, &newClosurePointsC)); 24509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &coverQuads)); 24519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEndC - cStartC, &coverQuadsSend)); 24520a96aa3bSJed Brown count = 0; 24530a96aa3bSJed Brown for (t = fltC; t <= lltC; t++) { /* unfortunately, we need to pack a send array, since quads are not stored packed in p4est */ 24540a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4estC->trees->array)[t]); 24550a96aa3bSJed Brown PetscInt q; 24560a96aa3bSJed Brown 24579566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(&coverQuadsSend[count], tree->quadrants.array, tree->quadrants.elem_count * sizeof(p4est_quadrant_t))); 24580a96aa3bSJed Brown for (q = 0; (size_t)q < tree->quadrants.elem_count; q++) coverQuadsSend[count + q].p.which_tree = t; 24590a96aa3bSJed Brown count += tree->quadrants.elem_count; 24600a96aa3bSJed Brown } 24610a96aa3bSJed Brown /* p is of a union type p4est_quadrant_data, but only the p.which_tree field is active at this time. So, we 24620a96aa3bSJed Brown have a simple blockTypes[] to use. Note that quadStruct does not count potential padding in array of 24630a96aa3bSJed Brown p4est_quadrant_t. We have to call MPI_Type_create_resized() to change upper-bound of quadStruct. 24640a96aa3bSJed Brown */ 24659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_struct(4, blockSizes, blockOffsets, blockTypes, &quadStruct)); 24669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(quadStruct, 0, sizeof(p4est_quadrant_t), &quadType)); 24679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&quadType)); 24689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coveringSF, nodeClosureType, closurePointsC, newClosurePointsC, MPI_REPLACE)); 24699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coveringSF, quadType, coverQuadsSend, coverQuads, MPI_REPLACE)); 24709566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coveringSF, nodeClosureType, closurePointsC, newClosurePointsC, MPI_REPLACE)); 24719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coveringSF, quadType, coverQuadsSend, coverQuads, MPI_REPLACE)); 24729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&quadStruct)); 24739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&quadType)); 24749566063dSJacob Faibussowitsch PetscCall(PetscFree(coverQuadsSend)); 24759566063dSJacob Faibussowitsch PetscCall(PetscFree(closurePointsC)); 24769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coveringSF)); 24770a96aa3bSJed Brown closurePointsC = newClosurePointsC; 24780a96aa3bSJed Brown 24790a96aa3bSJed Brown /* assign tree quads based on locations in coverQuads */ 24800a96aa3bSJed Brown { 24810a96aa3bSJed Brown PetscInt q; 24820a96aa3bSJed Brown for (q = 0; q < nleaves; q++) { 24830a96aa3bSJed Brown p4est_locidx_t t = coverQuads[q].p.which_tree; 24840a96aa3bSJed Brown if (!treeQuadCounts[t - fltF]++) treeQuads[t - fltF] = &coverQuads[q]; 24850a96aa3bSJed Brown } 24860a96aa3bSJed Brown } 24870a96aa3bSJed Brown } 24880a96aa3bSJed Brown } 24890a96aa3bSJed Brown if (!coverQuads) { /* matching partitions: assign tree quads based on locations in p4est native arrays */ 24900a96aa3bSJed Brown for (t = fltF; t <= lltF; t++) { 24910a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4estC->trees->array)[t]); 24920a96aa3bSJed Brown 24930a96aa3bSJed Brown treeQuadCounts[t - fltF] = tree->quadrants.elem_count; 24940a96aa3bSJed Brown treeQuads[t - fltF] = (p4est_quadrant_t *)tree->quadrants.array; 24950a96aa3bSJed Brown } 24960a96aa3bSJed Brown } 24970a96aa3bSJed Brown 24980a96aa3bSJed Brown { 24990a96aa3bSJed Brown PetscInt p; 25000a96aa3bSJed Brown PetscInt cLocalStartF; 25010a96aa3bSJed Brown PetscSF pointSF; 25020a96aa3bSJed Brown PetscSFNode *roots; 25030a96aa3bSJed Brown PetscInt *rootType; 25040a96aa3bSJed Brown DM refTree = NULL; 25050a96aa3bSJed Brown DMLabel canonical; 25060a96aa3bSJed Brown PetscInt *childClosures[P4EST_CHILDREN] = {NULL}; 25070a96aa3bSJed Brown PetscInt *rootClosure = NULL; 25080a96aa3bSJed Brown PetscInt coarseOffset; 25090a96aa3bSJed Brown PetscInt numCoarseQuads; 25100a96aa3bSJed Brown 25119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &roots)); 25129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &rootType)); 25139566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(fine, &pointSF)); 25140a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 25150a96aa3bSJed Brown roots[p - pStartF].rank = -1; 25160a96aa3bSJed Brown roots[p - pStartF].index = -1; 25170a96aa3bSJed Brown rootType[p - pStartF] = -1; 25180a96aa3bSJed Brown } 25190a96aa3bSJed Brown if (formCids) { 25200a96aa3bSJed Brown PetscInt child; 25210a96aa3bSJed Brown 25229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &cids)); 25230a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) cids[p - pStartF] = -2; 25249566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(plexF, &refTree)); 25259566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(refTree, 0, PETSC_TRUE, NULL, &rootClosure)); 25260a96aa3bSJed Brown for (child = 0; child < P4EST_CHILDREN; child++) { /* get the closures of the child cells in the reference tree */ 25279566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(refTree, child + 1, PETSC_TRUE, NULL, &childClosures[child])); 25280a96aa3bSJed Brown } 25299566063dSJacob Faibussowitsch PetscCall(DMGetLabel(refTree, "canonical", &canonical)); 25300a96aa3bSJed Brown } 25310a96aa3bSJed Brown cLocalStartF = pforestF->cLocalStart; 25320a96aa3bSJed Brown for (t = fltF, coarseOffset = 0, numCoarseQuads = 0; t <= lltF; t++, coarseOffset += numCoarseQuads) { 25330a96aa3bSJed Brown p4est_tree_t *tree = &(((p4est_tree_t *)p4estF->trees->array)[t]); 25340a96aa3bSJed Brown PetscInt numFineQuads = tree->quadrants.elem_count; 25350a96aa3bSJed Brown p4est_quadrant_t *coarseQuads = treeQuads[t - fltF]; 25360a96aa3bSJed Brown p4est_quadrant_t *fineQuads = (p4est_quadrant_t *)tree->quadrants.array; 25370a96aa3bSJed Brown PetscInt i, coarseCount = 0; 25380a96aa3bSJed Brown PetscInt offset = tree->quadrants_offset; 25390a96aa3bSJed Brown sc_array_t coarseQuadsArray; 25400a96aa3bSJed Brown 25410a96aa3bSJed Brown numCoarseQuads = treeQuadCounts[t - fltF]; 2542792fecdfSBarry Smith PetscCallP4est(sc_array_init_data, (&coarseQuadsArray, coarseQuads, sizeof(p4est_quadrant_t), (size_t)numCoarseQuads)); 25430a96aa3bSJed Brown for (i = 0; i < numFineQuads; i++) { 25440a96aa3bSJed Brown PetscInt c = i + offset; 25450a96aa3bSJed Brown p4est_quadrant_t *quad = &fineQuads[i]; 25460a96aa3bSJed Brown p4est_quadrant_t *quadCoarse = NULL; 25470a96aa3bSJed Brown ssize_t disjoint = -1; 25480a96aa3bSJed Brown 25490a96aa3bSJed Brown while (disjoint < 0 && coarseCount < numCoarseQuads) { 25500a96aa3bSJed Brown quadCoarse = &coarseQuads[coarseCount]; 2551792fecdfSBarry Smith PetscCallP4estReturn(disjoint, p4est_quadrant_disjoint, (quadCoarse, quad)); 25520a96aa3bSJed Brown if (disjoint < 0) coarseCount++; 25530a96aa3bSJed Brown } 255408401ef6SPierre Jolivet PetscCheck(disjoint == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "did not find overlapping coarse quad"); 25550a96aa3bSJed Brown if (quadCoarse->level > quad->level || (quadCoarse->level == quad->level && !transferIdent)) { /* the "coarse" mesh is finer than the fine mesh at the point: continue */ 25560a96aa3bSJed Brown if (transferIdent) { /* find corners */ 25570a96aa3bSJed Brown PetscInt j = 0; 25580a96aa3bSJed Brown 25590a96aa3bSJed Brown do { 25600a96aa3bSJed Brown if (j < P4EST_CHILDREN) { 25610a96aa3bSJed Brown p4est_quadrant_t cornerQuad; 25620a96aa3bSJed Brown int equal; 25630a96aa3bSJed Brown 2564792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_corner_descendant, (quad, &cornerQuad, j, quadCoarse->level)); 2565792fecdfSBarry Smith PetscCallP4estReturn(equal, p4est_quadrant_is_equal, (&cornerQuad, quadCoarse)); 25660a96aa3bSJed Brown if (equal) { 25670a96aa3bSJed Brown PetscInt petscJ = P4estVertToPetscVert[j]; 25680a96aa3bSJed Brown PetscInt p = closurePointsF[numClosureIndices * c + (P4EST_INSUL - P4EST_CHILDREN) + petscJ].index; 25690a96aa3bSJed Brown PetscSFNode q = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + (P4EST_INSUL - P4EST_CHILDREN) + petscJ]; 25700a96aa3bSJed Brown 25710a96aa3bSJed Brown roots[p - pStartF] = q; 25720a96aa3bSJed Brown rootType[p - pStartF] = PETSC_MAX_INT; 25730a96aa3bSJed Brown cids[p - pStartF] = -1; 25740a96aa3bSJed Brown j++; 25750a96aa3bSJed Brown } 25760a96aa3bSJed Brown } 25770a96aa3bSJed Brown coarseCount++; 25780a96aa3bSJed Brown disjoint = 1; 25790a96aa3bSJed Brown if (coarseCount < numCoarseQuads) { 25800a96aa3bSJed Brown quadCoarse = &coarseQuads[coarseCount]; 2581792fecdfSBarry Smith PetscCallP4estReturn(disjoint, p4est_quadrant_disjoint, (quadCoarse, quad)); 25820a96aa3bSJed Brown } 25830a96aa3bSJed Brown } while (!disjoint); 25840a96aa3bSJed Brown } 25850a96aa3bSJed Brown continue; 25860a96aa3bSJed Brown } 25870a96aa3bSJed Brown if (quadCoarse->level == quad->level) { /* same quad present in coarse and fine mesh */ 25880a96aa3bSJed Brown PetscInt j; 25890a96aa3bSJed Brown for (j = 0; j < numClosureIndices; j++) { 25900a96aa3bSJed Brown PetscInt p = closurePointsF[numClosureIndices * c + j].index; 25910a96aa3bSJed Brown 25920a96aa3bSJed Brown roots[p - pStartF] = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + j]; 25930a96aa3bSJed Brown rootType[p - pStartF] = PETSC_MAX_INT; /* unconditionally accept */ 25940a96aa3bSJed Brown cids[p - pStartF] = -1; 25950a96aa3bSJed Brown } 25960a96aa3bSJed Brown } else { 25970a96aa3bSJed Brown PetscInt levelDiff = quad->level - quadCoarse->level; 25980a96aa3bSJed Brown PetscInt proposedCids[P4EST_INSUL] = {0}; 25990a96aa3bSJed Brown 26000a96aa3bSJed Brown if (formCids) { 26010a96aa3bSJed Brown PetscInt cl; 26020a96aa3bSJed Brown PetscInt *pointClosure = NULL; 26030a96aa3bSJed Brown int cid; 26040a96aa3bSJed Brown 260508401ef6SPierre Jolivet PetscCheck(levelDiff <= 1, PETSC_COMM_SELF, PETSC_ERR_USER, "Recursive child ids not implemented"); 2606792fecdfSBarry Smith PetscCallP4estReturn(cid, p4est_quadrant_child_id, (quad)); 26079566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plexF, c + cLocalStartF, PETSC_TRUE, NULL, &pointClosure)); 26080a96aa3bSJed Brown for (cl = 0; cl < P4EST_INSUL; cl++) { 26090a96aa3bSJed Brown PetscInt p = pointClosure[2 * cl]; 26100a96aa3bSJed Brown PetscInt point = childClosures[cid][2 * cl]; 26110a96aa3bSJed Brown PetscInt ornt = childClosures[cid][2 * cl + 1]; 26120a96aa3bSJed Brown PetscInt newcid = -1; 26130a96aa3bSJed Brown DMPolytopeType ct; 26140a96aa3bSJed Brown 26150a96aa3bSJed Brown if (rootType[p - pStartF] == PETSC_MAX_INT) continue; 26169566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(refTree, point, &ct)); 26170a96aa3bSJed Brown ornt = DMPolytopeConvertNewOrientation_Internal(ct, ornt); 26180a96aa3bSJed Brown if (!cl) { 26190a96aa3bSJed Brown newcid = cid + 1; 26200a96aa3bSJed Brown } else { 26210a96aa3bSJed Brown PetscInt rcl, parent, parentOrnt = 0; 26220a96aa3bSJed Brown 26239566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(refTree, point, &parent, NULL)); 26240a96aa3bSJed Brown if (parent == point) { 26250a96aa3bSJed Brown newcid = -1; 26260a96aa3bSJed Brown } else if (!parent) { /* in the root */ 26270a96aa3bSJed Brown newcid = point; 26280a96aa3bSJed Brown } else { 26290a96aa3bSJed Brown DMPolytopeType rct = DM_POLYTOPE_UNKNOWN; 26300a96aa3bSJed Brown 26310a96aa3bSJed Brown for (rcl = 1; rcl < P4EST_INSUL; rcl++) { 26320a96aa3bSJed Brown if (rootClosure[2 * rcl] == parent) { 26339566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(refTree, parent, &rct)); 26340a96aa3bSJed Brown parentOrnt = DMPolytopeConvertNewOrientation_Internal(rct, rootClosure[2 * rcl + 1]); 26350a96aa3bSJed Brown break; 26360a96aa3bSJed Brown } 26370a96aa3bSJed Brown } 263808401ef6SPierre Jolivet PetscCheck(rcl < P4EST_INSUL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Couldn't find parent in root closure"); 26399566063dSJacob Faibussowitsch PetscCall(DMPlexReferenceTreeGetChildSymmetry(refTree, parent, parentOrnt, ornt, point, DMPolytopeConvertNewOrientation_Internal(rct, pointClosure[2 * rcl + 1]), NULL, &newcid)); 26400a96aa3bSJed Brown } 26410a96aa3bSJed Brown } 26420a96aa3bSJed Brown if (newcid >= 0) { 264348a46eb9SPierre Jolivet if (canonical) PetscCall(DMLabelGetValue(canonical, newcid, &newcid)); 26440a96aa3bSJed Brown proposedCids[cl] = newcid; 26450a96aa3bSJed Brown } 26460a96aa3bSJed Brown } 26479566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plexF, c + cLocalStartF, PETSC_TRUE, NULL, &pointClosure)); 26480a96aa3bSJed Brown } 26499371c9d4SSatish Balay p4est_qcoord_t coarseBound[2][P4EST_DIM] = { 26509371c9d4SSatish Balay {quadCoarse->x, quadCoarse->y, 26510a96aa3bSJed Brown #if defined(P4_TO_P8) 26520a96aa3bSJed Brown quadCoarse->z 26530a96aa3bSJed Brown #endif 26549371c9d4SSatish Balay }, 26559371c9d4SSatish Balay {0} 26569371c9d4SSatish Balay }; 26579371c9d4SSatish Balay p4est_qcoord_t fineBound[2][P4EST_DIM] = { 26589371c9d4SSatish Balay {quad->x, quad->y, 26590a96aa3bSJed Brown #if defined(P4_TO_P8) 26600a96aa3bSJed Brown quad->z 26610a96aa3bSJed Brown #endif 26629371c9d4SSatish Balay }, 26639371c9d4SSatish Balay {0} 26649371c9d4SSatish Balay }; 26650a96aa3bSJed Brown PetscInt j; 26660a96aa3bSJed Brown for (j = 0; j < P4EST_DIM; j++) { /* get the coordinates of cell boundaries in each direction */ 26670a96aa3bSJed Brown coarseBound[1][j] = coarseBound[0][j] + P4EST_QUADRANT_LEN(quadCoarse->level); 26680a96aa3bSJed Brown fineBound[1][j] = fineBound[0][j] + P4EST_QUADRANT_LEN(quad->level); 26690a96aa3bSJed Brown } 26700a96aa3bSJed Brown for (j = 0; j < numClosureIndices; j++) { 26710a96aa3bSJed Brown PetscInt l, p; 26720a96aa3bSJed Brown PetscSFNode q; 26730a96aa3bSJed Brown 26740a96aa3bSJed Brown p = closurePointsF[numClosureIndices * c + j].index; 26750a96aa3bSJed Brown if (rootType[p - pStartF] == PETSC_MAX_INT) continue; 26760a96aa3bSJed Brown if (j == 0) { /* volume: ancestor is volume */ 26770a96aa3bSJed Brown l = 0; 26780a96aa3bSJed Brown } else if (j < 1 + P4EST_FACES) { /* facet */ 26790a96aa3bSJed Brown PetscInt face = PetscFaceToP4estFace[j - 1]; 26800a96aa3bSJed Brown PetscInt direction = face / 2; 26810a96aa3bSJed Brown PetscInt coarseFace = -1; 26820a96aa3bSJed Brown 26830a96aa3bSJed Brown if (coarseBound[face % 2][direction] == fineBound[face % 2][direction]) { 26840a96aa3bSJed Brown coarseFace = face; 26850a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 26860a96aa3bSJed Brown } else { 26870a96aa3bSJed Brown l = 0; 26880a96aa3bSJed Brown } 26890a96aa3bSJed Brown #if defined(P4_TO_P8) 26900a96aa3bSJed Brown } else if (j < 1 + P4EST_FACES + P8EST_EDGES) { 26910a96aa3bSJed Brown PetscInt edge = PetscEdgeToP4estEdge[j - (1 + P4EST_FACES)]; 26920a96aa3bSJed Brown PetscInt direction = edge / 4; 26930a96aa3bSJed Brown PetscInt mod = edge % 4; 26940a96aa3bSJed Brown PetscInt coarseEdge = -1, coarseFace = -1; 26950a96aa3bSJed Brown PetscInt minDir = PetscMin((direction + 1) % 3, (direction + 2) % 3); 26960a96aa3bSJed Brown PetscInt maxDir = PetscMax((direction + 1) % 3, (direction + 2) % 3); 26970a96aa3bSJed Brown PetscBool dirTest[2]; 26980a96aa3bSJed Brown 26990a96aa3bSJed Brown dirTest[0] = (PetscBool)(coarseBound[mod % 2][minDir] == fineBound[mod % 2][minDir]); 27000a96aa3bSJed Brown dirTest[1] = (PetscBool)(coarseBound[mod / 2][maxDir] == fineBound[mod / 2][maxDir]); 27010a96aa3bSJed Brown 27020a96aa3bSJed Brown if (dirTest[0] && dirTest[1]) { /* fine edge falls on coarse edge */ 27030a96aa3bSJed Brown coarseEdge = edge; 27040a96aa3bSJed Brown l = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge]; 27050a96aa3bSJed Brown } else if (dirTest[0]) { /* fine edge falls on a coarse face in the minDir direction */ 27060a96aa3bSJed Brown coarseFace = 2 * minDir + (mod % 2); 27070a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27080a96aa3bSJed Brown } else if (dirTest[1]) { /* fine edge falls on a coarse face in the maxDir direction */ 27090a96aa3bSJed Brown coarseFace = 2 * maxDir + (mod / 2); 27100a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27110a96aa3bSJed Brown } else { 27120a96aa3bSJed Brown l = 0; 27130a96aa3bSJed Brown } 27140a96aa3bSJed Brown #endif 27150a96aa3bSJed Brown } else { 27160a96aa3bSJed Brown PetscInt vertex = PetscVertToP4estVert[P4EST_CHILDREN - (P4EST_INSUL - j)]; 27170a96aa3bSJed Brown PetscBool dirTest[P4EST_DIM]; 27180a96aa3bSJed Brown PetscInt m; 27190a96aa3bSJed Brown PetscInt numMatch = 0; 27200a96aa3bSJed Brown PetscInt coarseVertex = -1, coarseFace = -1; 27210a96aa3bSJed Brown #if defined(P4_TO_P8) 27220a96aa3bSJed Brown PetscInt coarseEdge = -1; 27230a96aa3bSJed Brown #endif 27240a96aa3bSJed Brown 27250a96aa3bSJed Brown for (m = 0; m < P4EST_DIM; m++) { 27260a96aa3bSJed Brown dirTest[m] = (PetscBool)(coarseBound[(vertex >> m) & 1][m] == fineBound[(vertex >> m) & 1][m]); 27270a96aa3bSJed Brown if (dirTest[m]) numMatch++; 27280a96aa3bSJed Brown } 27290a96aa3bSJed Brown if (numMatch == P4EST_DIM) { /* vertex on vertex */ 27300a96aa3bSJed Brown coarseVertex = vertex; 27310a96aa3bSJed Brown l = P4EST_INSUL - (P4EST_CHILDREN - P4estVertToPetscVert[coarseVertex]); 27320a96aa3bSJed Brown } else if (numMatch == 1) { /* vertex on face */ 27330a96aa3bSJed Brown for (m = 0; m < P4EST_DIM; m++) { 27340a96aa3bSJed Brown if (dirTest[m]) { 27350a96aa3bSJed Brown coarseFace = 2 * m + ((vertex >> m) & 1); 27360a96aa3bSJed Brown break; 27370a96aa3bSJed Brown } 27380a96aa3bSJed Brown } 27390a96aa3bSJed Brown l = 1 + P4estFaceToPetscFace[coarseFace]; 27400a96aa3bSJed Brown #if defined(P4_TO_P8) 27410a96aa3bSJed Brown } else if (numMatch == 2) { /* vertex on edge */ 27420a96aa3bSJed Brown for (m = 0; m < P4EST_DIM; m++) { 27430a96aa3bSJed Brown if (!dirTest[m]) { 27440a96aa3bSJed Brown PetscInt otherDir1 = (m + 1) % 3; 27450a96aa3bSJed Brown PetscInt otherDir2 = (m + 2) % 3; 27460a96aa3bSJed Brown PetscInt minDir = PetscMin(otherDir1, otherDir2); 27470a96aa3bSJed Brown PetscInt maxDir = PetscMax(otherDir1, otherDir2); 27480a96aa3bSJed Brown 27490a96aa3bSJed Brown coarseEdge = m * 4 + 2 * ((vertex >> maxDir) & 1) + ((vertex >> minDir) & 1); 27500a96aa3bSJed Brown break; 27510a96aa3bSJed Brown } 27520a96aa3bSJed Brown } 27530a96aa3bSJed Brown l = 1 + P4EST_FACES + P4estEdgeToPetscEdge[coarseEdge]; 27540a96aa3bSJed Brown #endif 27550a96aa3bSJed Brown } else { /* volume */ 27560a96aa3bSJed Brown l = 0; 27570a96aa3bSJed Brown } 27580a96aa3bSJed Brown } 27590a96aa3bSJed Brown q = closurePointsC[numClosureIndices * (coarseCount + coarseOffset) + l]; 27600a96aa3bSJed Brown if (l > rootType[p - pStartF]) { 27610a96aa3bSJed Brown if (l >= P4EST_INSUL - P4EST_CHILDREN) { /* vertex on vertex: unconditional acceptance */ 27620a96aa3bSJed Brown if (transferIdent) { 27630a96aa3bSJed Brown roots[p - pStartF] = q; 27640a96aa3bSJed Brown rootType[p - pStartF] = PETSC_MAX_INT; 27650a96aa3bSJed Brown if (formCids) cids[p - pStartF] = -1; 27660a96aa3bSJed Brown } 27670a96aa3bSJed Brown } else { 27680a96aa3bSJed Brown PetscInt k, thisp = p, limit; 27690a96aa3bSJed Brown 27700a96aa3bSJed Brown roots[p - pStartF] = q; 27710a96aa3bSJed Brown rootType[p - pStartF] = l; 27720a96aa3bSJed Brown if (formCids) cids[p - pStartF] = proposedCids[j]; 27730a96aa3bSJed Brown limit = transferIdent ? levelDiff : (levelDiff - 1); 27740a96aa3bSJed Brown for (k = 0; k < limit; k++) { 27750a96aa3bSJed Brown PetscInt parent; 27760a96aa3bSJed Brown 27779566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plexF, thisp, &parent, NULL)); 27780a96aa3bSJed Brown if (parent == thisp) break; 27790a96aa3bSJed Brown 27800a96aa3bSJed Brown roots[parent - pStartF] = q; 27810a96aa3bSJed Brown rootType[parent - pStartF] = PETSC_MAX_INT; 27820a96aa3bSJed Brown if (formCids) cids[parent - pStartF] = -1; 27830a96aa3bSJed Brown thisp = parent; 27840a96aa3bSJed Brown } 27850a96aa3bSJed Brown } 27860a96aa3bSJed Brown } 27870a96aa3bSJed Brown } 27880a96aa3bSJed Brown } 27890a96aa3bSJed Brown } 27900a96aa3bSJed Brown } 27910a96aa3bSJed Brown 27920a96aa3bSJed Brown /* now every cell has labeled the points in its closure, so we first make sure everyone agrees by reducing to roots, and the broadcast the agreements */ 27930a96aa3bSJed Brown if (size > 1) { 27940a96aa3bSJed Brown PetscInt *rootTypeCopy, p; 27950a96aa3bSJed Brown 27969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &rootTypeCopy)); 27979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rootTypeCopy, rootType, pEndF - pStartF)); 279857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_MAX)); 279957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_MAX)); 28009566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_REPLACE)); 28019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF, MPIU_INT, rootTypeCopy, rootTypeCopy, MPI_REPLACE)); 28020a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 28030a96aa3bSJed Brown if (rootTypeCopy[p - pStartF] > rootType[p - pStartF]) { /* another process found a root of higher type (e.g. vertex instead of edge), which we want to accept, so nullify this */ 28040a96aa3bSJed Brown roots[p - pStartF].rank = -1; 28050a96aa3bSJed Brown roots[p - pStartF].index = -1; 28060a96aa3bSJed Brown } 28079371c9d4SSatish Balay if (formCids && rootTypeCopy[p - pStartF] == PETSC_MAX_INT) { cids[p - pStartF] = -1; /* we have found an antecedent that is the same: no child id */ } 28080a96aa3bSJed Brown } 28099566063dSJacob Faibussowitsch PetscCall(PetscFree(rootTypeCopy)); 28109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(pointSF, nodeType, roots, roots, sfNodeReduce)); 28119566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(pointSF, nodeType, roots, roots, sfNodeReduce)); 28129566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF, nodeType, roots, roots, MPI_REPLACE)); 28139566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF, nodeType, roots, roots, MPI_REPLACE)); 28140a96aa3bSJed Brown } 28159566063dSJacob Faibussowitsch PetscCall(PetscFree(rootType)); 28160a96aa3bSJed Brown 28170a96aa3bSJed Brown { 28180a96aa3bSJed Brown PetscInt numRoots; 28190a96aa3bSJed Brown PetscInt numLeaves; 28200a96aa3bSJed Brown PetscInt *leaves; 28210a96aa3bSJed Brown PetscSFNode *iremote; 28220a96aa3bSJed Brown /* count leaves */ 28230a96aa3bSJed Brown 28240a96aa3bSJed Brown numRoots = pEndC - pStartC; 28250a96aa3bSJed Brown 28260a96aa3bSJed Brown numLeaves = 0; 28270a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 28280a96aa3bSJed Brown if (roots[p - pStartF].index >= 0) numLeaves++; 28290a96aa3bSJed Brown } 28309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &leaves)); 28319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &iremote)); 28320a96aa3bSJed Brown numLeaves = 0; 28330a96aa3bSJed Brown for (p = pStartF; p < pEndF; p++) { 28340a96aa3bSJed Brown if (roots[p - pStartF].index >= 0) { 28350a96aa3bSJed Brown leaves[numLeaves] = p - pStartF; 28360a96aa3bSJed Brown iremote[numLeaves] = roots[p - pStartF]; 28370a96aa3bSJed Brown numLeaves++; 28380a96aa3bSJed Brown } 28390a96aa3bSJed Brown } 28409566063dSJacob Faibussowitsch PetscCall(PetscFree(roots)); 28419566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, sf)); 28420a96aa3bSJed Brown if (numLeaves == (pEndF - pStartF)) { 28439566063dSJacob Faibussowitsch PetscCall(PetscFree(leaves)); 28449566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sf, numRoots, numLeaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 28450a96aa3bSJed Brown } else { 28469566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sf, numRoots, numLeaves, leaves, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 28470a96aa3bSJed Brown } 28480a96aa3bSJed Brown } 28490a96aa3bSJed Brown if (formCids) { 28500a96aa3bSJed Brown PetscSF pointSF; 28510a96aa3bSJed Brown PetscInt child; 28520a96aa3bSJed Brown 28539566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(plexF, &refTree)); 28549566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(plexF, &pointSF)); 285557168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, cids, cids, MPI_MAX)); 285657168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, cids, cids, MPI_MAX)); 28570a96aa3bSJed Brown if (childIds) *childIds = cids; 285848a46eb9SPierre Jolivet for (child = 0; child < P4EST_CHILDREN; child++) PetscCall(DMPlexRestoreTransitiveClosure(refTree, child + 1, PETSC_TRUE, NULL, &childClosures[child])); 28599566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(refTree, 0, PETSC_TRUE, NULL, &rootClosure)); 28600a96aa3bSJed Brown } 28610a96aa3bSJed Brown } 28620a96aa3bSJed Brown if (saveInCoarse) { /* cache results */ 28639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*sf)); 28640a96aa3bSJed Brown pforestC->pointSelfToAdaptSF = *sf; 28650a96aa3bSJed Brown if (!childIds) { 28660a96aa3bSJed Brown pforestC->pointSelfToAdaptCids = cids; 28670a96aa3bSJed Brown } else { 28689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &pforestC->pointSelfToAdaptCids)); 28699566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(pforestC->pointSelfToAdaptCids, cids, pEndF - pStartF)); 28700a96aa3bSJed Brown } 28710a96aa3bSJed Brown } else if (saveInFine) { 28729566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*sf)); 28730a96aa3bSJed Brown pforestF->pointAdaptToSelfSF = *sf; 28740a96aa3bSJed Brown if (!childIds) { 28750a96aa3bSJed Brown pforestF->pointAdaptToSelfCids = cids; 28760a96aa3bSJed Brown } else { 28779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &pforestF->pointAdaptToSelfCids)); 28789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(pforestF->pointAdaptToSelfCids, cids, pEndF - pStartF)); 28790a96aa3bSJed Brown } 28800a96aa3bSJed Brown } 28819566063dSJacob Faibussowitsch PetscCall(PetscFree2(treeQuads, treeQuadCounts)); 28829566063dSJacob Faibussowitsch PetscCall(PetscFree(coverQuads)); 28839566063dSJacob Faibussowitsch PetscCall(PetscFree(closurePointsC)); 28849566063dSJacob Faibussowitsch PetscCall(PetscFree(closurePointsF)); 28859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&nodeClosureType)); 28869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&sfNodeReduce)); 28879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&nodeType)); 28883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28890a96aa3bSJed Brown } 28900a96aa3bSJed Brown 28910a96aa3bSJed Brown /* children are sf leaves of parents */ 2892d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetTransferSF_Internal(DM coarse, DM fine, const PetscInt dofPerDim[], PetscSF *sf, PetscBool transferIdent, PetscInt *childIds[]) 2893d71ae5a4SJacob Faibussowitsch { 28940a96aa3bSJed Brown MPI_Comm comm; 2895d70f29a3SPierre Jolivet PetscMPIInt rank; 28960a96aa3bSJed Brown DM_Forest_pforest *pforestC, *pforestF; 28970a96aa3bSJed Brown DM plexC, plexF; 28980a96aa3bSJed Brown PetscInt pStartC, pEndC, pStartF, pEndF; 28990a96aa3bSJed Brown PetscSF pointTransferSF; 29000a96aa3bSJed Brown PetscBool allOnes = PETSC_TRUE; 29010a96aa3bSJed Brown 29020a96aa3bSJed Brown PetscFunctionBegin; 29030a96aa3bSJed Brown pforestC = (DM_Forest_pforest *)((DM_Forest *)coarse->data)->data; 29040a96aa3bSJed Brown pforestF = (DM_Forest_pforest *)((DM_Forest *)fine->data)->data; 290508401ef6SPierre Jolivet PetscCheck(pforestC->topo == pforestF->topo, PetscObjectComm((PetscObject)coarse), PETSC_ERR_ARG_INCOMP, "DM's must have the same base DM"); 29060a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)coarse); 29079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 29080a96aa3bSJed Brown 29090a96aa3bSJed Brown { 29100a96aa3bSJed Brown PetscInt i; 29110a96aa3bSJed Brown for (i = 0; i <= P4EST_DIM; i++) { 29120a96aa3bSJed Brown if (dofPerDim[i] != 1) { 29130a96aa3bSJed Brown allOnes = PETSC_FALSE; 29140a96aa3bSJed Brown break; 29150a96aa3bSJed Brown } 29160a96aa3bSJed Brown } 29170a96aa3bSJed Brown } 29189566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Point(coarse, fine, &pointTransferSF, transferIdent, childIds)); 29190a96aa3bSJed Brown if (allOnes) { 29200a96aa3bSJed Brown *sf = pointTransferSF; 29213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29220a96aa3bSJed Brown } 29230a96aa3bSJed Brown 29249566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(fine, &plexF)); 29259566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexF, &pStartF, &pEndF)); 29269566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(coarse, &plexC)); 29279566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexC, &pStartC, &pEndC)); 29280a96aa3bSJed Brown { 29290a96aa3bSJed Brown PetscInt numRoots; 29300a96aa3bSJed Brown PetscInt numLeaves; 29310a96aa3bSJed Brown const PetscInt *leaves; 29320a96aa3bSJed Brown const PetscSFNode *iremote; 29330a96aa3bSJed Brown PetscInt d; 29340a96aa3bSJed Brown PetscSection leafSection, rootSection; 29350a96aa3bSJed Brown 2936217f96c1SStefano Zampini /* count leaves */ 29379566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointTransferSF, &numRoots, &numLeaves, &leaves, &iremote)); 29389566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &rootSection)); 29399566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &leafSection)); 29409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection, pStartC, pEndC)); 29419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(leafSection, pStartF, pEndF)); 29420a96aa3bSJed Brown 29430a96aa3bSJed Brown for (d = 0; d <= P4EST_DIM; d++) { 29440a96aa3bSJed Brown PetscInt startC, endC, e; 29450a96aa3bSJed Brown 29469566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plexC, P4EST_DIM - d, &startC, &endC)); 294748a46eb9SPierre Jolivet for (e = startC; e < endC; e++) PetscCall(PetscSectionSetDof(rootSection, e, dofPerDim[d])); 29480a96aa3bSJed Brown } 29490a96aa3bSJed Brown 29500a96aa3bSJed Brown for (d = 0; d <= P4EST_DIM; d++) { 29510a96aa3bSJed Brown PetscInt startF, endF, e; 29520a96aa3bSJed Brown 29539566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plexF, P4EST_DIM - d, &startF, &endF)); 295448a46eb9SPierre Jolivet for (e = startF; e < endF; e++) PetscCall(PetscSectionSetDof(leafSection, e, dofPerDim[d])); 29550a96aa3bSJed Brown } 29560a96aa3bSJed Brown 29579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 29589566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(leafSection)); 29590a96aa3bSJed Brown { 29600a96aa3bSJed Brown PetscInt nroots, nleaves; 29610a96aa3bSJed Brown PetscInt *mine, i, p; 29620a96aa3bSJed Brown PetscInt *offsets, *offsetsRoot; 29630a96aa3bSJed Brown PetscSFNode *remote; 29640a96aa3bSJed Brown 29659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndF - pStartF, &offsets)); 29669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEndC - pStartC, &offsetsRoot)); 296748a46eb9SPierre Jolivet for (p = pStartC; p < pEndC; p++) PetscCall(PetscSectionGetOffset(rootSection, p, &offsetsRoot[p - pStartC])); 29689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointTransferSF, MPIU_INT, offsetsRoot, offsets, MPI_REPLACE)); 29699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointTransferSF, MPIU_INT, offsetsRoot, offsets, MPI_REPLACE)); 29709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection, &nroots)); 29710a96aa3bSJed Brown nleaves = 0; 29720a96aa3bSJed Brown for (i = 0; i < numLeaves; i++) { 29730a96aa3bSJed Brown PetscInt leaf = leaves ? leaves[i] : i; 29740a96aa3bSJed Brown PetscInt dof; 29750a96aa3bSJed Brown 29769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, leaf, &dof)); 29770a96aa3bSJed Brown nleaves += dof; 29780a96aa3bSJed Brown } 29799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &mine)); 29809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &remote)); 29810a96aa3bSJed Brown nleaves = 0; 29820a96aa3bSJed Brown for (i = 0; i < numLeaves; i++) { 29830a96aa3bSJed Brown PetscInt leaf = leaves ? leaves[i] : i; 29840a96aa3bSJed Brown PetscInt dof; 29850a96aa3bSJed Brown PetscInt off, j; 29860a96aa3bSJed Brown 29879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, leaf, &dof)); 29889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection, leaf, &off)); 29890a96aa3bSJed Brown for (j = 0; j < dof; j++) { 29900a96aa3bSJed Brown remote[nleaves].rank = iremote[i].rank; 29910a96aa3bSJed Brown remote[nleaves].index = offsets[leaf] + j; 29920a96aa3bSJed Brown mine[nleaves++] = off + j; 29930a96aa3bSJed Brown } 29940a96aa3bSJed Brown } 29959566063dSJacob Faibussowitsch PetscCall(PetscFree(offsetsRoot)); 29969566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 29979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, sf)); 29989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sf, nroots, nleaves, mine, PETSC_OWN_POINTER, remote, PETSC_OWN_POINTER)); 29990a96aa3bSJed Brown } 30009566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 30019566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 30029566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pointTransferSF)); 30030a96aa3bSJed Brown } 30043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30050a96aa3bSJed Brown } 30060a96aa3bSJed Brown 3007d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetTransferSF(DM dmA, DM dmB, const PetscInt dofPerDim[], PetscSF *sfAtoB, PetscSF *sfBtoA) 3008d71ae5a4SJacob Faibussowitsch { 30090a96aa3bSJed Brown DM adaptA, adaptB; 30100a96aa3bSJed Brown DMAdaptFlag purpose; 30110a96aa3bSJed Brown 30120a96aa3bSJed Brown PetscFunctionBegin; 30139566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmA, &adaptA)); 30149566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmB, &adaptB)); 30150a96aa3bSJed Brown /* it is more efficient when the coarser mesh is the first argument: reorder if we know one is coarser than the other */ 30160a96aa3bSJed Brown if (adaptA && adaptA->data == dmB->data) { /* dmA was adapted from dmB */ 30179566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmA, &purpose)); 30180a96aa3bSJed Brown if (purpose == DM_ADAPT_REFINE) { 30199566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB)); 30203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30210a96aa3bSJed Brown } 30220a96aa3bSJed Brown } else if (adaptB && adaptB->data == dmA->data) { /* dmB was adapted from dmA */ 30239566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmB, &purpose)); 30240a96aa3bSJed Brown if (purpose == DM_ADAPT_COARSEN) { 30259566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF(dmB, dmA, dofPerDim, sfBtoA, sfAtoB)); 30263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30270a96aa3bSJed Brown } 30280a96aa3bSJed Brown } 30291baa6e33SBarry Smith if (sfAtoB) PetscCall(DMPforestGetTransferSF_Internal(dmA, dmB, dofPerDim, sfAtoB, PETSC_TRUE, NULL)); 30301baa6e33SBarry Smith if (sfBtoA) PetscCall(DMPforestGetTransferSF_Internal(dmB, dmA, dofPerDim, sfBtoA, (PetscBool)(sfAtoB == NULL), NULL)); 30313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30320a96aa3bSJed Brown } 30330a96aa3bSJed Brown 3034d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestLabelsInitialize(DM dm, DM plex) 3035d71ae5a4SJacob Faibussowitsch { 30360a96aa3bSJed Brown DM_Forest *forest = (DM_Forest *)dm->data; 30370a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)forest->data; 30380a96aa3bSJed Brown PetscInt cLocalStart, cLocalEnd, cStart, cEnd, fStart, fEnd, eStart, eEnd, vStart, vEnd; 30390a96aa3bSJed Brown PetscInt cStartBase, cEndBase, fStartBase, fEndBase, vStartBase, vEndBase, eStartBase, eEndBase; 30400a96aa3bSJed Brown PetscInt pStart, pEnd, pStartBase, pEndBase, p; 30410a96aa3bSJed Brown DM base; 30420a96aa3bSJed Brown PetscInt *star = NULL, starSize; 30430a96aa3bSJed Brown DMLabelLink next = dm->labels; 30440a96aa3bSJed Brown PetscInt guess = 0; 30450a96aa3bSJed Brown p4est_topidx_t num_trees = pforest->topo->conn->num_trees; 30460a96aa3bSJed Brown 30470a96aa3bSJed Brown PetscFunctionBegin; 30480a96aa3bSJed Brown pforest->labelsFinalized = PETSC_TRUE; 30490a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 30500a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 30519566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 30520a96aa3bSJed Brown if (!base) { 30530a96aa3bSJed Brown if (pforest->ghostName) { /* insert a label to make the boundaries, with stratum values denoting which face of the element touches the boundary */ 30540a96aa3bSJed Brown p4est_connectivity_t *conn = pforest->topo->conn; 30550a96aa3bSJed Brown p4est_t *p4est = pforest->forest; 30560a96aa3bSJed Brown p4est_tree_t *trees = (p4est_tree_t *)p4est->trees->array; 30570a96aa3bSJed Brown p4est_topidx_t t, flt = p4est->first_local_tree; 30580a96aa3bSJed Brown p4est_topidx_t llt = pforest->forest->last_local_tree; 30590a96aa3bSJed Brown DMLabel ghostLabel; 30600a96aa3bSJed Brown PetscInt c; 30610a96aa3bSJed Brown 30629566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(plex, pforest->ghostName)); 30639566063dSJacob Faibussowitsch PetscCall(DMGetLabel(plex, pforest->ghostName, &ghostLabel)); 30640a96aa3bSJed Brown for (c = cLocalStart, t = flt; t <= llt; t++) { 30650a96aa3bSJed Brown p4est_tree_t *tree = &trees[t]; 30660a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 30670a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 30680a96aa3bSJed Brown PetscInt q; 30690a96aa3bSJed Brown 30700a96aa3bSJed Brown for (q = 0; q < numQuads; q++, c++) { 30710a96aa3bSJed Brown p4est_quadrant_t *quad = &quads[q]; 30720a96aa3bSJed Brown PetscInt f; 30730a96aa3bSJed Brown 30740a96aa3bSJed Brown for (f = 0; f < P4EST_FACES; f++) { 30750a96aa3bSJed Brown p4est_quadrant_t neigh; 30760a96aa3bSJed Brown int isOutside; 30770a96aa3bSJed Brown 3078792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_face_neighbor, (quad, f, &neigh)); 3079792fecdfSBarry Smith PetscCallP4estReturn(isOutside, p4est_quadrant_is_outside_face, (&neigh)); 30800a96aa3bSJed Brown if (isOutside) { 30810a96aa3bSJed Brown p4est_topidx_t nt; 30820a96aa3bSJed Brown PetscInt nf; 30830a96aa3bSJed Brown 30840a96aa3bSJed Brown nt = conn->tree_to_tree[t * P4EST_FACES + f]; 30850a96aa3bSJed Brown nf = (PetscInt)conn->tree_to_face[t * P4EST_FACES + f]; 30860a96aa3bSJed Brown nf = nf % P4EST_FACES; 30870a96aa3bSJed Brown if (nt == t && nf == f) { 30880a96aa3bSJed Brown PetscInt plexF = P4estFaceToPetscFace[f]; 30890a96aa3bSJed Brown const PetscInt *cone; 30900a96aa3bSJed Brown 30919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex, c, &cone)); 30929566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, cone[plexF], plexF + 1)); 30930a96aa3bSJed Brown } 30940a96aa3bSJed Brown } 30950a96aa3bSJed Brown } 30960a96aa3bSJed Brown } 30970a96aa3bSJed Brown } 30980a96aa3bSJed Brown } 30993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31000a96aa3bSJed Brown } 31019566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(base, 0, &cStartBase, &cEndBase)); 31029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(base, 1, &fStartBase, &fEndBase)); 31039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(base, P4EST_DIM - 1, &eStartBase, &eEndBase)); 31049566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(base, 0, &vStartBase, &vEndBase)); 31050a96aa3bSJed Brown 31069566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plex, 0, &cStart, &cEnd)); 31079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plex, 1, &fStart, &fEnd)); 31089566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(plex, P4EST_DIM - 1, &eStart, &eEnd)); 31099566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(plex, 0, &vStart, &vEnd)); 31100a96aa3bSJed Brown 31119566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &pStart, &pEnd)); 31129566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(base, &pStartBase, &pEndBase)); 31130a96aa3bSJed Brown /* go through the mesh: use star to find a quadrant that borders a point. Use the closure to determine the 31140a96aa3bSJed Brown * orientation of the quadrant relative to that point. Use that to relate the point to the numbering in the base 31150a96aa3bSJed Brown * mesh, and extract a label value (since the base mesh is redundantly distributed, can be found locally). */ 31160a96aa3bSJed Brown while (next) { 31170a96aa3bSJed Brown DMLabel baseLabel; 31180a96aa3bSJed Brown DMLabel label = next->label; 31190a96aa3bSJed Brown PetscBool isDepth, isCellType, isGhost, isVTK, isSpmap; 31200a96aa3bSJed Brown const char *name; 31210a96aa3bSJed Brown 31229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 31239566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 31240a96aa3bSJed Brown if (isDepth) { 31250a96aa3bSJed Brown next = next->next; 31260a96aa3bSJed Brown continue; 31270a96aa3bSJed Brown } 31289566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &isCellType)); 31290a96aa3bSJed Brown if (isCellType) { 31300a96aa3bSJed Brown next = next->next; 31310a96aa3bSJed Brown continue; 31320a96aa3bSJed Brown } 31339566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "ghost", &isGhost)); 31340a96aa3bSJed Brown if (isGhost) { 31350a96aa3bSJed Brown next = next->next; 31360a96aa3bSJed Brown continue; 31370a96aa3bSJed Brown } 31389566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "vtk", &isVTK)); 31390a96aa3bSJed Brown if (isVTK) { 31400a96aa3bSJed Brown next = next->next; 31410a96aa3bSJed Brown continue; 31420a96aa3bSJed Brown } 31439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "_forest_base_subpoint_map", &isSpmap)); 31440a96aa3bSJed Brown if (!isSpmap) { 31459566063dSJacob Faibussowitsch PetscCall(DMGetLabel(base, name, &baseLabel)); 31460a96aa3bSJed Brown if (!baseLabel) { 31470a96aa3bSJed Brown next = next->next; 31480a96aa3bSJed Brown continue; 31490a96aa3bSJed Brown } 31509566063dSJacob Faibussowitsch PetscCall(DMLabelCreateIndex(baseLabel, pStartBase, pEndBase)); 31510a96aa3bSJed Brown } else baseLabel = NULL; 31520a96aa3bSJed Brown 31530a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 31540a96aa3bSJed Brown PetscInt s, c = -1, l; 31550a96aa3bSJed Brown PetscInt *closure = NULL, closureSize; 31560a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 31570a96aa3bSJed Brown p4est_tree_t *trees = (p4est_tree_t *)pforest->forest->trees->array; 31580a96aa3bSJed Brown p4est_quadrant_t *q; 31590a96aa3bSJed Brown PetscInt t, val; 31600a96aa3bSJed Brown PetscBool zerosupportpoint = PETSC_FALSE; 31610a96aa3bSJed Brown 31629566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, p, PETSC_FALSE, &starSize, &star)); 31630a96aa3bSJed Brown for (s = 0; s < starSize; s++) { 31640a96aa3bSJed Brown PetscInt point = star[2 * s]; 31650a96aa3bSJed Brown 31660a96aa3bSJed Brown if (cStart <= point && point < cEnd) { 31679566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, point, PETSC_TRUE, &closureSize, &closure)); 31680a96aa3bSJed Brown for (l = 0; l < closureSize; l++) { 31690a96aa3bSJed Brown PetscInt qParent = closure[2 * l], q, pp = p, pParent = p; 31700a96aa3bSJed Brown do { /* check parents of q */ 31710a96aa3bSJed Brown q = qParent; 31720a96aa3bSJed Brown if (q == p) { 31730a96aa3bSJed Brown c = point; 31740a96aa3bSJed Brown break; 31750a96aa3bSJed Brown } 31769566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &qParent, NULL)); 31770a96aa3bSJed Brown } while (qParent != q); 31780a96aa3bSJed Brown if (c != -1) break; 31799566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, pp, &pParent, NULL)); 31800a96aa3bSJed Brown q = closure[2 * l]; 31810a96aa3bSJed Brown while (pParent != pp) { /* check parents of p */ 31820a96aa3bSJed Brown pp = pParent; 31830a96aa3bSJed Brown if (pp == q) { 31840a96aa3bSJed Brown c = point; 31850a96aa3bSJed Brown break; 31860a96aa3bSJed Brown } 31879566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, pp, &pParent, NULL)); 31880a96aa3bSJed Brown } 31890a96aa3bSJed Brown if (c != -1) break; 31900a96aa3bSJed Brown } 31919566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, point, PETSC_TRUE, NULL, &closure)); 31920a96aa3bSJed Brown if (l < closureSize) break; 31930a96aa3bSJed Brown } else { 31940a96aa3bSJed Brown PetscInt supportSize; 31950a96aa3bSJed Brown 31969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(plex, point, &supportSize)); 31970a96aa3bSJed Brown zerosupportpoint = (PetscBool)(zerosupportpoint || !supportSize); 31980a96aa3bSJed Brown } 31990a96aa3bSJed Brown } 32000a96aa3bSJed Brown if (c < 0) { 32010a96aa3bSJed Brown const char *prefix; 32020a96aa3bSJed Brown PetscBool print = PETSC_FALSE; 32030a96aa3bSJed Brown 32049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 32059566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject)dm)->options, prefix, "-dm_forest_print_label_error", &print, NULL)); 32060a96aa3bSJed Brown if (print) { 32070a96aa3bSJed Brown PetscInt i; 32080a96aa3bSJed Brown 320963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Failed to find cell with point %" PetscInt_FMT " in its closure for label %s (starSize %" PetscInt_FMT ")\n", PetscGlobalRank, p, baseLabel ? ((PetscObject)baseLabel)->name : "_forest_base_subpoint_map", starSize)); 321063a3b9bcSJacob Faibussowitsch for (i = 0; i < starSize; i++) PetscCall(PetscPrintf(PETSC_COMM_SELF, " star[%" PetscInt_FMT "] = %" PetscInt_FMT ",%" PetscInt_FMT "\n", i, star[2 * i], star[2 * i + 1])); 32110a96aa3bSJed Brown } 32129566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, p, PETSC_FALSE, NULL, &star)); 32130a96aa3bSJed Brown if (zerosupportpoint) continue; 32149371c9d4SSatish Balay else 32159371c9d4SSatish Balay SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Failed to find cell with point %" PetscInt_FMT " in its closure for label %s. Rerun with -dm_forest_print_label_error for more information", p, baseLabel ? ((PetscObject)baseLabel)->name : "_forest_base_subpoint_map"); 32160a96aa3bSJed Brown } 32179566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, p, PETSC_FALSE, NULL, &star)); 32180a96aa3bSJed Brown 32190a96aa3bSJed Brown if (c < cLocalStart) { 32200a96aa3bSJed Brown /* get from the beginning of the ghost layer */ 3221*f4f49eeaSPierre Jolivet q = &ghosts[c]; 32220a96aa3bSJed Brown t = (PetscInt)q->p.which_tree; 32230a96aa3bSJed Brown } else if (c < cLocalEnd) { 32240a96aa3bSJed Brown PetscInt lo = 0, hi = num_trees; 32250a96aa3bSJed Brown /* get from local quadrants: have to find the right tree */ 32260a96aa3bSJed Brown 32270a96aa3bSJed Brown c -= cLocalStart; 32280a96aa3bSJed Brown 32290a96aa3bSJed Brown do { 32300a96aa3bSJed Brown p4est_tree_t *tree; 32310a96aa3bSJed Brown 32321dca8a05SBarry Smith PetscCheck(guess >= lo && guess < num_trees && lo < hi, PETSC_COMM_SELF, PETSC_ERR_PLIB, "failed binary search"); 32330a96aa3bSJed Brown tree = &trees[guess]; 32340a96aa3bSJed Brown if (c < tree->quadrants_offset) { 32350a96aa3bSJed Brown hi = guess; 32360a96aa3bSJed Brown } else if (c < tree->quadrants_offset + (PetscInt)tree->quadrants.elem_count) { 32370a96aa3bSJed Brown q = &((p4est_quadrant_t *)tree->quadrants.array)[c - (PetscInt)tree->quadrants_offset]; 32380a96aa3bSJed Brown t = guess; 32390a96aa3bSJed Brown break; 32400a96aa3bSJed Brown } else { 32410a96aa3bSJed Brown lo = guess + 1; 32420a96aa3bSJed Brown } 32430a96aa3bSJed Brown guess = lo + (hi - lo) / 2; 32440a96aa3bSJed Brown } while (1); 32450a96aa3bSJed Brown } else { 32460a96aa3bSJed Brown /* get from the end of the ghost layer */ 32470a96aa3bSJed Brown c -= (cLocalEnd - cLocalStart); 32480a96aa3bSJed Brown 3249*f4f49eeaSPierre Jolivet q = &ghosts[c]; 32500a96aa3bSJed Brown t = (PetscInt)q->p.which_tree; 32510a96aa3bSJed Brown } 32520a96aa3bSJed Brown 32530a96aa3bSJed Brown if (l == 0) { /* cell */ 32540a96aa3bSJed Brown if (baseLabel) { 32559566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val)); 32560a96aa3bSJed Brown } else { 32570a96aa3bSJed Brown val = t + cStartBase; 32580a96aa3bSJed Brown } 32599566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 32600a96aa3bSJed Brown } else if (l >= 1 && l < 1 + P4EST_FACES) { /* facet */ 32610a96aa3bSJed Brown p4est_quadrant_t nq; 32620a96aa3bSJed Brown int isInside; 32630a96aa3bSJed Brown 32640a96aa3bSJed Brown l = PetscFaceToP4estFace[l - 1]; 3265792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_face_neighbor, (q, l, &nq)); 3266792fecdfSBarry Smith PetscCallP4estReturn(isInside, p4est_quadrant_is_inside_root, (&nq)); 32670a96aa3bSJed Brown if (isInside) { 32680a96aa3bSJed Brown /* this facet is in the interior of a tree, so it inherits the label of the tree */ 32690a96aa3bSJed Brown if (baseLabel) { 32709566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val)); 32710a96aa3bSJed Brown } else { 32720a96aa3bSJed Brown val = t + cStartBase; 32730a96aa3bSJed Brown } 32749566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 32750a96aa3bSJed Brown } else { 32760a96aa3bSJed Brown PetscInt f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + l]; 32770a96aa3bSJed Brown 32780a96aa3bSJed Brown if (baseLabel) { 32799566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, f + fStartBase, &val)); 32800a96aa3bSJed Brown } else { 32810a96aa3bSJed Brown val = f + fStartBase; 32820a96aa3bSJed Brown } 32839566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 32840a96aa3bSJed Brown } 32850a96aa3bSJed Brown #if defined(P4_TO_P8) 32860a96aa3bSJed Brown } else if (l >= 1 + P4EST_FACES && l < 1 + P4EST_FACES + P8EST_EDGES) { /* edge */ 32870a96aa3bSJed Brown p4est_quadrant_t nq; 32880a96aa3bSJed Brown int isInside; 32890a96aa3bSJed Brown 32900a96aa3bSJed Brown l = PetscEdgeToP4estEdge[l - (1 + P4EST_FACES)]; 3291792fecdfSBarry Smith PetscCallP4est(p8est_quadrant_edge_neighbor, (q, l, &nq)); 3292792fecdfSBarry Smith PetscCallP4estReturn(isInside, p4est_quadrant_is_inside_root, (&nq)); 32930a96aa3bSJed Brown if (isInside) { 32940a96aa3bSJed Brown /* this edge is in the interior of a tree, so it inherits the label of the tree */ 32950a96aa3bSJed Brown if (baseLabel) { 32969566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val)); 32970a96aa3bSJed Brown } else { 32980a96aa3bSJed Brown val = t + cStartBase; 32990a96aa3bSJed Brown } 33009566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33010a96aa3bSJed Brown } else { 33020a96aa3bSJed Brown int isOutsideFace; 33030a96aa3bSJed Brown 3304792fecdfSBarry Smith PetscCallP4estReturn(isOutsideFace, p4est_quadrant_is_outside_face, (&nq)); 33050a96aa3bSJed Brown if (isOutsideFace) { 33060a96aa3bSJed Brown PetscInt f; 33070a96aa3bSJed Brown 33080a96aa3bSJed Brown if (nq.x < 0) { 33090a96aa3bSJed Brown f = 0; 33100a96aa3bSJed Brown } else if (nq.x >= P4EST_ROOT_LEN) { 33110a96aa3bSJed Brown f = 1; 33120a96aa3bSJed Brown } else if (nq.y < 0) { 33130a96aa3bSJed Brown f = 2; 33140a96aa3bSJed Brown } else if (nq.y >= P4EST_ROOT_LEN) { 33150a96aa3bSJed Brown f = 3; 33160a96aa3bSJed Brown } else if (nq.z < 0) { 33170a96aa3bSJed Brown f = 4; 33180a96aa3bSJed Brown } else { 33190a96aa3bSJed Brown f = 5; 33200a96aa3bSJed Brown } 33210a96aa3bSJed Brown f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f]; 33220a96aa3bSJed Brown if (baseLabel) { 33239566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, f + fStartBase, &val)); 33240a96aa3bSJed Brown } else { 33250a96aa3bSJed Brown val = f + fStartBase; 33260a96aa3bSJed Brown } 33279566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33280a96aa3bSJed Brown } else { /* the quadrant edge corresponds to the tree edge */ 33290a96aa3bSJed Brown PetscInt e = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + l]; 33300a96aa3bSJed Brown 33310a96aa3bSJed Brown if (baseLabel) { 33329566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, e + eStartBase, &val)); 33330a96aa3bSJed Brown } else { 33340a96aa3bSJed Brown val = e + eStartBase; 33350a96aa3bSJed Brown } 33369566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33370a96aa3bSJed Brown } 33380a96aa3bSJed Brown } 33390a96aa3bSJed Brown #endif 33400a96aa3bSJed Brown } else { /* vertex */ 33410a96aa3bSJed Brown p4est_quadrant_t nq; 33420a96aa3bSJed Brown int isInside; 33430a96aa3bSJed Brown 33440a96aa3bSJed Brown #if defined(P4_TO_P8) 33450a96aa3bSJed Brown l = PetscVertToP4estVert[l - (1 + P4EST_FACES + P8EST_EDGES)]; 33460a96aa3bSJed Brown #else 33470a96aa3bSJed Brown l = PetscVertToP4estVert[l - (1 + P4EST_FACES)]; 33480a96aa3bSJed Brown #endif 3349792fecdfSBarry Smith PetscCallP4est(p4est_quadrant_corner_neighbor, (q, l, &nq)); 3350792fecdfSBarry Smith PetscCallP4estReturn(isInside, p4est_quadrant_is_inside_root, (&nq)); 33510a96aa3bSJed Brown if (isInside) { 33520a96aa3bSJed Brown if (baseLabel) { 33539566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, t + cStartBase, &val)); 33540a96aa3bSJed Brown } else { 33550a96aa3bSJed Brown val = t + cStartBase; 33560a96aa3bSJed Brown } 33579566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33580a96aa3bSJed Brown } else { 33590a96aa3bSJed Brown int isOutside; 33600a96aa3bSJed Brown 3361792fecdfSBarry Smith PetscCallP4estReturn(isOutside, p4est_quadrant_is_outside_face, (&nq)); 33620a96aa3bSJed Brown if (isOutside) { 33630a96aa3bSJed Brown PetscInt f = -1; 33640a96aa3bSJed Brown 33650a96aa3bSJed Brown if (nq.x < 0) { 33660a96aa3bSJed Brown f = 0; 33670a96aa3bSJed Brown } else if (nq.x >= P4EST_ROOT_LEN) { 33680a96aa3bSJed Brown f = 1; 33690a96aa3bSJed Brown } else if (nq.y < 0) { 33700a96aa3bSJed Brown f = 2; 33710a96aa3bSJed Brown } else if (nq.y >= P4EST_ROOT_LEN) { 33720a96aa3bSJed Brown f = 3; 33730a96aa3bSJed Brown #if defined(P4_TO_P8) 33740a96aa3bSJed Brown } else if (nq.z < 0) { 33750a96aa3bSJed Brown f = 4; 33760a96aa3bSJed Brown } else { 33770a96aa3bSJed Brown f = 5; 33780a96aa3bSJed Brown #endif 33790a96aa3bSJed Brown } 33800a96aa3bSJed Brown f = pforest->topo->tree_face_to_uniq[P4EST_FACES * t + f]; 33810a96aa3bSJed Brown if (baseLabel) { 33829566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, f + fStartBase, &val)); 33830a96aa3bSJed Brown } else { 33840a96aa3bSJed Brown val = f + fStartBase; 33850a96aa3bSJed Brown } 33869566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 33870a96aa3bSJed Brown continue; 33880a96aa3bSJed Brown } 33890a96aa3bSJed Brown #if defined(P4_TO_P8) 3390792fecdfSBarry Smith PetscCallP4estReturn(isOutside, p8est_quadrant_is_outside_edge, (&nq)); 33910a96aa3bSJed Brown if (isOutside) { 33920a96aa3bSJed Brown /* outside edge */ 33930a96aa3bSJed Brown PetscInt e = -1; 33940a96aa3bSJed Brown 33950a96aa3bSJed Brown if (nq.x >= 0 && nq.x < P4EST_ROOT_LEN) { 33960a96aa3bSJed Brown if (nq.z < 0) { 33970a96aa3bSJed Brown if (nq.y < 0) { 33980a96aa3bSJed Brown e = 0; 33990a96aa3bSJed Brown } else { 34000a96aa3bSJed Brown e = 1; 34010a96aa3bSJed Brown } 34020a96aa3bSJed Brown } else { 34030a96aa3bSJed Brown if (nq.y < 0) { 34040a96aa3bSJed Brown e = 2; 34050a96aa3bSJed Brown } else { 34060a96aa3bSJed Brown e = 3; 34070a96aa3bSJed Brown } 34080a96aa3bSJed Brown } 34090a96aa3bSJed Brown } else if (nq.y >= 0 && nq.y < P4EST_ROOT_LEN) { 34100a96aa3bSJed Brown if (nq.z < 0) { 34110a96aa3bSJed Brown if (nq.x < 0) { 34120a96aa3bSJed Brown e = 4; 34130a96aa3bSJed Brown } else { 34140a96aa3bSJed Brown e = 5; 34150a96aa3bSJed Brown } 34160a96aa3bSJed Brown } else { 34170a96aa3bSJed Brown if (nq.x < 0) { 34180a96aa3bSJed Brown e = 6; 34190a96aa3bSJed Brown } else { 34200a96aa3bSJed Brown e = 7; 34210a96aa3bSJed Brown } 34220a96aa3bSJed Brown } 34230a96aa3bSJed Brown } else { 34240a96aa3bSJed Brown if (nq.y < 0) { 34250a96aa3bSJed Brown if (nq.x < 0) { 34260a96aa3bSJed Brown e = 8; 34270a96aa3bSJed Brown } else { 34280a96aa3bSJed Brown e = 9; 34290a96aa3bSJed Brown } 34300a96aa3bSJed Brown } else { 34310a96aa3bSJed Brown if (nq.x < 0) { 34320a96aa3bSJed Brown e = 10; 34330a96aa3bSJed Brown } else { 34340a96aa3bSJed Brown e = 11; 34350a96aa3bSJed Brown } 34360a96aa3bSJed Brown } 34370a96aa3bSJed Brown } 34380a96aa3bSJed Brown 34390a96aa3bSJed Brown e = pforest->topo->conn->tree_to_edge[P8EST_EDGES * t + e]; 34400a96aa3bSJed Brown if (baseLabel) { 34419566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, e + eStartBase, &val)); 34420a96aa3bSJed Brown } else { 34430a96aa3bSJed Brown val = e + eStartBase; 34440a96aa3bSJed Brown } 34459566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 34460a96aa3bSJed Brown continue; 34470a96aa3bSJed Brown } 34480a96aa3bSJed Brown #endif 34490a96aa3bSJed Brown { 34500a96aa3bSJed Brown /* outside vertex: same corner as quadrant corner */ 34510a96aa3bSJed Brown PetscInt v = pforest->topo->conn->tree_to_corner[P4EST_CHILDREN * t + l]; 34520a96aa3bSJed Brown 34530a96aa3bSJed Brown if (baseLabel) { 34549566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(baseLabel, v + vStartBase, &val)); 34550a96aa3bSJed Brown } else { 34560a96aa3bSJed Brown val = v + vStartBase; 34570a96aa3bSJed Brown } 34589566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, val)); 34590a96aa3bSJed Brown } 34600a96aa3bSJed Brown } 34610a96aa3bSJed Brown } 34620a96aa3bSJed Brown } 34630a96aa3bSJed Brown next = next->next; 34640a96aa3bSJed Brown } 34653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34660a96aa3bSJed Brown } 34670a96aa3bSJed Brown 3468d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestLabelsFinalize(DM dm, DM plex) 3469d71ae5a4SJacob Faibussowitsch { 34700a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 34710a96aa3bSJed Brown DM adapt; 34720a96aa3bSJed Brown 34730a96aa3bSJed Brown PetscFunctionBegin; 34743ba16761SJacob Faibussowitsch if (pforest->labelsFinalized) PetscFunctionReturn(PETSC_SUCCESS); 34750a96aa3bSJed Brown pforest->labelsFinalized = PETSC_TRUE; 34769566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dm, &adapt)); 34770a96aa3bSJed Brown if (!adapt) { 34780a96aa3bSJed Brown /* Initialize labels from the base dm */ 34799566063dSJacob Faibussowitsch PetscCall(DMPforestLabelsInitialize(dm, plex)); 34800a96aa3bSJed Brown } else { 34810a96aa3bSJed Brown PetscInt dofPerDim[4] = {1, 1, 1, 1}; 34820a96aa3bSJed Brown PetscSF transferForward, transferBackward, pointSF; 34830a96aa3bSJed Brown PetscInt pStart, pEnd, pStartA, pEndA; 34840a96aa3bSJed Brown PetscInt *values, *adaptValues; 34850a96aa3bSJed Brown DMLabelLink next = adapt->labels; 34860a96aa3bSJed Brown DMLabel adaptLabel; 34870a96aa3bSJed Brown DM adaptPlex; 34880a96aa3bSJed Brown 34899566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityLabel(dm, &adaptLabel)); 34909566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(adapt, &adaptPlex)); 34919566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF(adapt, dm, dofPerDim, &transferForward, &transferBackward)); 34929566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &pStart, &pEnd)); 34939566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(adaptPlex, &pStartA, &pEndA)); 34949566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &values, pEndA - pStartA, &adaptValues)); 34959566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(plex, &pointSF)); 34960a96aa3bSJed Brown if (PetscDefined(USE_DEBUG)) { 34970a96aa3bSJed Brown PetscInt p; 34980a96aa3bSJed Brown for (p = pStartA; p < pEndA; p++) adaptValues[p - pStartA] = -1; 34990a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) values[p - pStart] = -2; 35000a96aa3bSJed Brown if (transferForward) { 35019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE)); 35029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE)); 35030a96aa3bSJed Brown } 35040a96aa3bSJed Brown if (transferBackward) { 350557168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX)); 350657168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX)); 35070a96aa3bSJed Brown } 35080a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 35090a96aa3bSJed Brown PetscInt q = p, parent; 35100a96aa3bSJed Brown 35119566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL)); 35120a96aa3bSJed Brown while (parent != q) { 35130a96aa3bSJed Brown if (values[parent] == -2) values[parent] = values[q]; 35140a96aa3bSJed Brown q = parent; 35159566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL)); 35160a96aa3bSJed Brown } 35170a96aa3bSJed Brown } 351857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, values, values, MPI_MAX)); 351957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, values, values, MPI_MAX)); 35209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF, MPIU_INT, values, values, MPI_REPLACE)); 35219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF, MPIU_INT, values, values, MPI_REPLACE)); 3522ad540459SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCheck(values[p - pStart] != -2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "uncovered point %" PetscInt_FMT, p); 35230a96aa3bSJed Brown } 35240a96aa3bSJed Brown while (next) { 35250a96aa3bSJed Brown DMLabel nextLabel = next->label; 35260a96aa3bSJed Brown const char *name; 35270a96aa3bSJed Brown PetscBool isDepth, isCellType, isGhost, isVTK; 35280a96aa3bSJed Brown DMLabel label; 35290a96aa3bSJed Brown PetscInt p; 35300a96aa3bSJed Brown 35319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)nextLabel, &name)); 35329566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 35330a96aa3bSJed Brown if (isDepth) { 35340a96aa3bSJed Brown next = next->next; 35350a96aa3bSJed Brown continue; 35360a96aa3bSJed Brown } 35379566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &isCellType)); 35380a96aa3bSJed Brown if (isCellType) { 35390a96aa3bSJed Brown next = next->next; 35400a96aa3bSJed Brown continue; 35410a96aa3bSJed Brown } 35429566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "ghost", &isGhost)); 35430a96aa3bSJed Brown if (isGhost) { 35440a96aa3bSJed Brown next = next->next; 35450a96aa3bSJed Brown continue; 35460a96aa3bSJed Brown } 35479566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "vtk", &isVTK)); 35480a96aa3bSJed Brown if (isVTK) { 35490a96aa3bSJed Brown next = next->next; 35500a96aa3bSJed Brown continue; 35510a96aa3bSJed Brown } 35520a96aa3bSJed Brown if (nextLabel == adaptLabel) { 35530a96aa3bSJed Brown next = next->next; 35540a96aa3bSJed Brown continue; 35550a96aa3bSJed Brown } 35560a96aa3bSJed Brown /* label was created earlier */ 35579566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 355848a46eb9SPierre Jolivet for (p = pStartA; p < pEndA; p++) PetscCall(DMLabelGetValue(nextLabel, p, &adaptValues[p])); 35590a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) values[p] = PETSC_MIN_INT; 35600a96aa3bSJed Brown 35611baa6e33SBarry Smith if (transferForward) PetscCall(PetscSFBcastBegin(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE)); 356257168dbeSPierre Jolivet if (transferBackward) PetscCall(PetscSFReduceBegin(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX)); 35631baa6e33SBarry Smith if (transferForward) PetscCall(PetscSFBcastEnd(transferForward, MPIU_INT, adaptValues, values, MPI_REPLACE)); 356457168dbeSPierre Jolivet if (transferBackward) PetscCall(PetscSFReduceEnd(transferBackward, MPIU_INT, adaptValues, values, MPI_MAX)); 35650a96aa3bSJed Brown for (p = pStart; p < pEnd; p++) { 35660a96aa3bSJed Brown PetscInt q = p, parent; 35670a96aa3bSJed Brown 35689566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL)); 35690a96aa3bSJed Brown while (parent != q) { 35700a96aa3bSJed Brown if (values[parent] == PETSC_MIN_INT) values[parent] = values[q]; 35710a96aa3bSJed Brown q = parent; 35729566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(plex, q, &parent, NULL)); 35730a96aa3bSJed Brown } 35740a96aa3bSJed Brown } 357557168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(pointSF, MPIU_INT, values, values, MPI_MAX)); 357657168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(pointSF, MPIU_INT, values, values, MPI_MAX)); 35779566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(pointSF, MPIU_INT, values, values, MPI_REPLACE)); 35789566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(pointSF, MPIU_INT, values, values, MPI_REPLACE)); 35790a96aa3bSJed Brown 358048a46eb9SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCall(DMLabelSetValue(label, p, values[p])); 35810a96aa3bSJed Brown next = next->next; 35820a96aa3bSJed Brown } 35839566063dSJacob Faibussowitsch PetscCall(PetscFree2(values, adaptValues)); 35849566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&transferForward)); 35859566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&transferBackward)); 35860a96aa3bSJed Brown pforest->labelsFinalized = PETSC_TRUE; 35870a96aa3bSJed Brown } 35883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35890a96aa3bSJed Brown } 35900a96aa3bSJed Brown 3591d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestMapCoordinates_Cell(DM plex, p4est_geometry_t *geom, PetscInt cell, p4est_quadrant_t *q, p4est_topidx_t t, p4est_connectivity_t *conn, PetscScalar *coords) 3592d71ae5a4SJacob Faibussowitsch { 35930a96aa3bSJed Brown PetscInt closureSize, c, coordStart, coordEnd, coordDim; 35940a96aa3bSJed Brown PetscInt *closure = NULL; 35950a96aa3bSJed Brown PetscSection coordSec; 35960a96aa3bSJed Brown 35970a96aa3bSJed Brown PetscFunctionBegin; 35989566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(plex, &coordSec)); 35999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSec, &coordStart, &coordEnd)); 36009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(plex, &coordDim)); 36019566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, cell, PETSC_TRUE, &closureSize, &closure)); 36020a96aa3bSJed Brown for (c = 0; c < closureSize; c++) { 36030a96aa3bSJed Brown PetscInt point = closure[2 * c]; 36040a96aa3bSJed Brown 36050a96aa3bSJed Brown if (point >= coordStart && point < coordEnd) { 36060a96aa3bSJed Brown PetscInt dof, off; 36070a96aa3bSJed Brown PetscInt nCoords, i; 36089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSec, point, &dof)); 360908401ef6SPierre Jolivet PetscCheck(dof % coordDim == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Did not understand coordinate layout"); 36100a96aa3bSJed Brown nCoords = dof / coordDim; 36119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSec, point, &off)); 36120a96aa3bSJed Brown for (i = 0; i < nCoords; i++) { 36130a96aa3bSJed Brown PetscScalar *coord = &coords[off + i * coordDim]; 36140a96aa3bSJed Brown double coordP4est[3] = {0.}; 36150a96aa3bSJed Brown double coordP4estMapped[3] = {0.}; 36160a96aa3bSJed Brown PetscInt j; 36170a96aa3bSJed Brown PetscReal treeCoords[P4EST_CHILDREN][3] = {{0.}}; 36180a96aa3bSJed Brown PetscReal eta[3] = {0.}; 36190a96aa3bSJed Brown PetscInt numRounds = 10; 36200a96aa3bSJed Brown PetscReal coordGuess[3] = {0.}; 36210a96aa3bSJed Brown 36220a96aa3bSJed Brown eta[0] = (PetscReal)q->x / (PetscReal)P4EST_ROOT_LEN; 36230a96aa3bSJed Brown eta[1] = (PetscReal)q->y / (PetscReal)P4EST_ROOT_LEN; 36240a96aa3bSJed Brown #if defined(P4_TO_P8) 36250a96aa3bSJed Brown eta[2] = (PetscReal)q->z / (PetscReal)P4EST_ROOT_LEN; 36260a96aa3bSJed Brown #endif 36270a96aa3bSJed Brown 36280a96aa3bSJed Brown for (j = 0; j < P4EST_CHILDREN; j++) { 36290a96aa3bSJed Brown PetscInt k; 36300a96aa3bSJed Brown 36310a96aa3bSJed Brown for (k = 0; k < 3; k++) treeCoords[j][k] = conn->vertices[3 * conn->tree_to_vertex[P4EST_CHILDREN * t + j] + k]; 36320a96aa3bSJed Brown } 36330a96aa3bSJed Brown 36340a96aa3bSJed Brown for (j = 0; j < P4EST_CHILDREN; j++) { 36350a96aa3bSJed Brown PetscInt k; 36360a96aa3bSJed Brown PetscReal prod = 1.; 36370a96aa3bSJed Brown 36380a96aa3bSJed Brown for (k = 0; k < P4EST_DIM; k++) prod *= (j & (1 << k)) ? eta[k] : (1. - eta[k]); 36390a96aa3bSJed Brown for (k = 0; k < 3; k++) coordGuess[k] += prod * treeCoords[j][k]; 36400a96aa3bSJed Brown } 36410a96aa3bSJed Brown 36420a96aa3bSJed Brown for (j = 0; j < numRounds; j++) { 36430a96aa3bSJed Brown PetscInt dir; 36440a96aa3bSJed Brown 36450a96aa3bSJed Brown for (dir = 0; dir < P4EST_DIM; dir++) { 36460a96aa3bSJed Brown PetscInt k; 36470a96aa3bSJed Brown PetscReal diff[3]; 36480a96aa3bSJed Brown PetscReal dXdeta[3] = {0.}; 36490a96aa3bSJed Brown PetscReal rhs, scale, update; 36500a96aa3bSJed Brown 36510a96aa3bSJed Brown for (k = 0; k < 3; k++) diff[k] = coordP4est[k] - coordGuess[k]; 36520a96aa3bSJed Brown for (k = 0; k < P4EST_CHILDREN; k++) { 36530a96aa3bSJed Brown PetscInt l; 36540a96aa3bSJed Brown PetscReal prod = 1.; 36550a96aa3bSJed Brown 36560a96aa3bSJed Brown for (l = 0; l < P4EST_DIM; l++) { 36570a96aa3bSJed Brown if (l == dir) { 36580a96aa3bSJed Brown prod *= (k & (1 << l)) ? 1. : -1.; 36590a96aa3bSJed Brown } else { 36600a96aa3bSJed Brown prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]); 36610a96aa3bSJed Brown } 36620a96aa3bSJed Brown } 36630a96aa3bSJed Brown for (l = 0; l < 3; l++) dXdeta[l] += prod * treeCoords[k][l]; 36640a96aa3bSJed Brown } 36650a96aa3bSJed Brown rhs = 0.; 36660a96aa3bSJed Brown scale = 0; 36670a96aa3bSJed Brown for (k = 0; k < 3; k++) { 36680a96aa3bSJed Brown rhs += diff[k] * dXdeta[k]; 36690a96aa3bSJed Brown scale += dXdeta[k] * dXdeta[k]; 36700a96aa3bSJed Brown } 36710a96aa3bSJed Brown update = rhs / scale; 36720a96aa3bSJed Brown eta[dir] += update; 36730a96aa3bSJed Brown eta[dir] = PetscMin(eta[dir], 1.); 36740a96aa3bSJed Brown eta[dir] = PetscMax(eta[dir], 0.); 36750a96aa3bSJed Brown 36760a96aa3bSJed Brown coordGuess[0] = coordGuess[1] = coordGuess[2] = 0.; 36770a96aa3bSJed Brown for (k = 0; k < P4EST_CHILDREN; k++) { 36780a96aa3bSJed Brown PetscInt l; 36790a96aa3bSJed Brown PetscReal prod = 1.; 36800a96aa3bSJed Brown 36810a96aa3bSJed Brown for (l = 0; l < P4EST_DIM; l++) prod *= (k & (1 << l)) ? eta[l] : (1. - eta[l]); 36820a96aa3bSJed Brown for (l = 0; l < 3; l++) coordGuess[l] += prod * treeCoords[k][l]; 36830a96aa3bSJed Brown } 36840a96aa3bSJed Brown } 36850a96aa3bSJed Brown } 36860a96aa3bSJed Brown for (j = 0; j < 3; j++) coordP4est[j] = (double)eta[j]; 36870a96aa3bSJed Brown 36880a96aa3bSJed Brown if (geom) { 36890a96aa3bSJed Brown (geom->X)(geom, t, coordP4est, coordP4estMapped); 36900a96aa3bSJed Brown for (j = 0; j < coordDim; j++) coord[j] = (PetscScalar)coordP4estMapped[j]; 36910a96aa3bSJed Brown } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded"); 36920a96aa3bSJed Brown } 36930a96aa3bSJed Brown } 36940a96aa3bSJed Brown } 36959566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, cell, PETSC_TRUE, &closureSize, &closure)); 36963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36970a96aa3bSJed Brown } 36980a96aa3bSJed Brown 3699d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestMapCoordinates(DM dm, DM plex) 3700d71ae5a4SJacob Faibussowitsch { 37010a96aa3bSJed Brown DM_Forest *forest; 37020a96aa3bSJed Brown DM_Forest_pforest *pforest; 37030a96aa3bSJed Brown p4est_geometry_t *geom; 37040a96aa3bSJed Brown PetscInt cLocalStart, cLocalEnd; 37050a96aa3bSJed Brown Vec coordLocalVec; 37060a96aa3bSJed Brown PetscScalar *coords; 37070a96aa3bSJed Brown p4est_topidx_t flt, llt, t; 37080a96aa3bSJed Brown p4est_tree_t *trees; 37090a96aa3bSJed Brown PetscErrorCode (*map)(DM, PetscInt, PetscInt, const PetscReal[], PetscReal[], void *); 37100a96aa3bSJed Brown void *mapCtx; 37110a96aa3bSJed Brown 37120a96aa3bSJed Brown PetscFunctionBegin; 37130a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 37140a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 37150a96aa3bSJed Brown geom = pforest->topo->geom; 37169566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseCoordinateMapping(dm, &map, &mapCtx)); 37173ba16761SJacob Faibussowitsch if (!geom && !map) PetscFunctionReturn(PETSC_SUCCESS); 37189566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(plex, &coordLocalVec)); 37199566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordLocalVec, &coords)); 37200a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 37210a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 37220a96aa3bSJed Brown flt = pforest->forest->first_local_tree; 37230a96aa3bSJed Brown llt = pforest->forest->last_local_tree; 37240a96aa3bSJed Brown trees = (p4est_tree_t *)pforest->forest->trees->array; 37250a96aa3bSJed Brown if (map) { /* apply the map directly to the existing coordinates */ 37260a96aa3bSJed Brown PetscSection coordSec; 37270a96aa3bSJed Brown PetscInt coordStart, coordEnd, p, coordDim, p4estCoordDim, cStart, cEnd, cEndInterior; 37280a96aa3bSJed Brown DM base; 37290a96aa3bSJed Brown 37309566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd)); 37312827ebadSStefano Zampini PetscCall(DMPlexGetCellTypeStratum(plex, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL)); 37320a96aa3bSJed Brown cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 37339566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 37349566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(plex, &coordSec)); 37359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSec, &coordStart, &coordEnd)); 37369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(plex, &coordDim)); 37370a96aa3bSJed Brown p4estCoordDim = PetscMin(coordDim, 3); 37380a96aa3bSJed Brown for (p = coordStart; p < coordEnd; p++) { 37390a96aa3bSJed Brown PetscInt *star = NULL, starSize; 37400a96aa3bSJed Brown PetscInt dof, off, cell = -1, coarsePoint = -1; 37410a96aa3bSJed Brown PetscInt nCoords, i; 37429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSec, p, &dof)); 374308401ef6SPierre Jolivet PetscCheck(dof % coordDim == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Did not understand coordinate layout"); 37440a96aa3bSJed Brown nCoords = dof / coordDim; 37459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSec, p, &off)); 37469566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(plex, p, PETSC_FALSE, &starSize, &star)); 37470a96aa3bSJed Brown for (i = 0; i < starSize; i++) { 37480a96aa3bSJed Brown PetscInt point = star[2 * i]; 37490a96aa3bSJed Brown 37500a96aa3bSJed Brown if (cStart <= point && point < cEnd) { 37510a96aa3bSJed Brown cell = point; 37520a96aa3bSJed Brown break; 37530a96aa3bSJed Brown } 37540a96aa3bSJed Brown } 37559566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(plex, p, PETSC_FALSE, &starSize, &star)); 37560a96aa3bSJed Brown if (cell >= 0) { 37570a96aa3bSJed Brown if (cell < cLocalStart) { 37580a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 37590a96aa3bSJed Brown 37600a96aa3bSJed Brown coarsePoint = ghosts[cell].p.which_tree; 37610a96aa3bSJed Brown } else if (cell < cLocalEnd) { 37620a96aa3bSJed Brown cell -= cLocalStart; 37630a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 3764*f4f49eeaSPierre Jolivet p4est_tree_t *tree = &trees[t]; 37650a96aa3bSJed Brown 37660a96aa3bSJed Brown if (cell >= tree->quadrants_offset && (size_t)cell < tree->quadrants_offset + tree->quadrants.elem_count) { 37670a96aa3bSJed Brown coarsePoint = t; 37680a96aa3bSJed Brown break; 37690a96aa3bSJed Brown } 37700a96aa3bSJed Brown } 37710a96aa3bSJed Brown } else { 37720a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 37730a96aa3bSJed Brown 37740a96aa3bSJed Brown coarsePoint = ghosts[cell - cLocalEnd].p.which_tree; 37750a96aa3bSJed Brown } 37760a96aa3bSJed Brown } 37770a96aa3bSJed Brown for (i = 0; i < nCoords; i++) { 37780a96aa3bSJed Brown PetscScalar *coord = &coords[off + i * coordDim]; 37790a96aa3bSJed Brown PetscReal coordP4est[3] = {0.}; 37800a96aa3bSJed Brown PetscReal coordP4estMapped[3] = {0.}; 37810a96aa3bSJed Brown PetscInt j; 37820a96aa3bSJed Brown 37830a96aa3bSJed Brown for (j = 0; j < p4estCoordDim; j++) coordP4est[j] = PetscRealPart(coord[j]); 37849566063dSJacob Faibussowitsch PetscCall((map)(base, coarsePoint, p4estCoordDim, coordP4est, coordP4estMapped, mapCtx)); 37850a96aa3bSJed Brown for (j = 0; j < p4estCoordDim; j++) coord[j] = (PetscScalar)coordP4estMapped[j]; 37860a96aa3bSJed Brown } 37870a96aa3bSJed Brown } 37880a96aa3bSJed Brown } else { /* we have to transform coordinates back to the unit cube (where geom is defined), and then apply geom */ 37890a96aa3bSJed Brown PetscInt cStart, cEnd, cEndInterior; 37900a96aa3bSJed Brown 37919566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd)); 37922827ebadSStefano Zampini PetscCall(DMPlexGetCellTypeStratum(plex, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL)); 37930a96aa3bSJed Brown cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 37940a96aa3bSJed Brown if (cLocalStart > 0) { 37950a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 37960a96aa3bSJed Brown PetscInt count; 37970a96aa3bSJed Brown 37980a96aa3bSJed Brown for (count = 0; count < cLocalStart; count++) { 37990a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count]; 38000a96aa3bSJed Brown p4est_topidx_t t = quad->p.which_tree; 38010a96aa3bSJed Brown 38029566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates_Cell(plex, geom, count, quad, t, pforest->topo->conn, coords)); 38030a96aa3bSJed Brown } 38040a96aa3bSJed Brown } 38050a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 3806*f4f49eeaSPierre Jolivet p4est_tree_t *tree = &trees[t]; 38070a96aa3bSJed Brown PetscInt offset = cLocalStart + tree->quadrants_offset, i; 38080a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 38090a96aa3bSJed Brown p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 38100a96aa3bSJed Brown 38110a96aa3bSJed Brown for (i = 0; i < numQuads; i++) { 38120a96aa3bSJed Brown PetscInt count = i + offset; 38130a96aa3bSJed Brown 38149566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates_Cell(plex, geom, count, &quads[i], t, pforest->topo->conn, coords)); 38150a96aa3bSJed Brown } 38160a96aa3bSJed Brown } 38170a96aa3bSJed Brown if (cLocalEnd - cLocalStart < cEnd - cStart) { 38180a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 38190a96aa3bSJed Brown PetscInt numGhosts = (PetscInt)pforest->ghost->ghosts.elem_count; 38200a96aa3bSJed Brown PetscInt count; 38210a96aa3bSJed Brown 38220a96aa3bSJed Brown for (count = 0; count < numGhosts - cLocalStart; count++) { 38230a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count + cLocalStart]; 38240a96aa3bSJed Brown p4est_topidx_t t = quad->p.which_tree; 38250a96aa3bSJed Brown 38269566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates_Cell(plex, geom, count + cLocalEnd, quad, t, pforest->topo->conn, coords)); 38270a96aa3bSJed Brown } 38280a96aa3bSJed Brown } 38290a96aa3bSJed Brown } 38309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordLocalVec, &coords)); 38313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38320a96aa3bSJed Brown } 38330a96aa3bSJed Brown 3834d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestQuadrantIsInterior(p4est_quadrant_t *quad, PetscBool *is_interior) 3835d71ae5a4SJacob Faibussowitsch { 3836852b71a7SToby Isaac PetscFunctionBegin; 3837852b71a7SToby Isaac p4est_qcoord_t h = P4EST_QUADRANT_LEN(quad->level); 3838852b71a7SToby Isaac if ((quad->x > 0) && (quad->x + h < P4EST_ROOT_LEN) 3839852b71a7SToby Isaac #ifdef P4_TO_P8 3840852b71a7SToby Isaac && (quad->z > 0) && (quad->z + h < P4EST_ROOT_LEN) 3841852b71a7SToby Isaac #endif 3842852b71a7SToby Isaac && (quad->y > 0) && (quad->y + h < P4EST_ROOT_LEN)) { 3843852b71a7SToby Isaac *is_interior = PETSC_TRUE; 3844852b71a7SToby Isaac } else { 3845852b71a7SToby Isaac *is_interior = PETSC_FALSE; 3846852b71a7SToby Isaac } 38473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3848852b71a7SToby Isaac } 3849852b71a7SToby Isaac 3850852b71a7SToby Isaac /* We always use DG coordinates with p4est: if they do not match the vertex 3851852b71a7SToby Isaac coordinates, add space for them in the section */ 3852d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestCheckLocalizeCell(DM plex, PetscInt cDim, Vec cVecOld, DM_Forest_pforest *pforest, PetscSection oldSection, PetscSection newSection, PetscInt cell, PetscInt coarsePoint, p4est_quadrant_t *quad) 3853d71ae5a4SJacob Faibussowitsch { 3854852b71a7SToby Isaac PetscBool is_interior; 3855852b71a7SToby Isaac 3856852b71a7SToby Isaac PetscFunctionBegin; 3857852b71a7SToby Isaac PetscCall(PforestQuadrantIsInterior(quad, &is_interior)); 3858852b71a7SToby Isaac if (is_interior) { // quads in the interior of a coarse cell can't touch periodic interfaces 3859852b71a7SToby Isaac PetscCall(PetscSectionSetDof(newSection, cell, 0)); 3860852b71a7SToby Isaac PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, 0)); 3861852b71a7SToby Isaac } else { 3862852b71a7SToby Isaac PetscInt cSize; 3863852b71a7SToby Isaac PetscScalar *values = NULL; 3864852b71a7SToby Isaac PetscBool same_coords = PETSC_TRUE; 3865852b71a7SToby Isaac 3866852b71a7SToby Isaac PetscCall(DMPlexVecGetClosure(plex, oldSection, cVecOld, cell, &cSize, &values)); 3867852b71a7SToby Isaac PetscAssert(cSize == cDim * P4EST_CHILDREN, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected closure size"); 3868852b71a7SToby Isaac for (int c = 0; c < P4EST_CHILDREN; c++) { 3869852b71a7SToby Isaac p4est_qcoord_t quad_coords[3]; 3870852b71a7SToby Isaac p4est_qcoord_t h = P4EST_QUADRANT_LEN(quad->level); 3871852b71a7SToby Isaac double corner_coords[3]; 3872852b71a7SToby Isaac double vert_coords[3]; 3873852b71a7SToby Isaac PetscInt corner = PetscVertToP4estVert[c]; 3874852b71a7SToby Isaac 3875ad540459SPierre Jolivet for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) vert_coords[d] = PetscRealPart(values[c * cDim + d]); 3876852b71a7SToby Isaac 3877852b71a7SToby Isaac quad_coords[0] = quad->x; 3878852b71a7SToby Isaac quad_coords[1] = quad->y; 3879852b71a7SToby Isaac #ifdef P4_TO_P8 3880852b71a7SToby Isaac quad_coords[2] = quad->z; 3881852b71a7SToby Isaac #endif 3882ad540459SPierre Jolivet for (int d = 0; d < 3; d++) quad_coords[d] += (corner & (1 << d)) ? h : 0; 3883852b71a7SToby Isaac #ifndef P4_TO_P8 3884648bc8c4SBarry Smith PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], corner_coords)); 3885852b71a7SToby Isaac #else 3886648bc8c4SBarry Smith PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], quad_coords[2], corner_coords)); 3887852b71a7SToby Isaac #endif 3888852b71a7SToby Isaac for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) { 3889852b71a7SToby Isaac if (fabs(vert_coords[d] - corner_coords[d]) > PETSC_SMALL) { 3890852b71a7SToby Isaac same_coords = PETSC_FALSE; 3891852b71a7SToby Isaac break; 3892852b71a7SToby Isaac } 3893852b71a7SToby Isaac } 3894852b71a7SToby Isaac } 3895852b71a7SToby Isaac if (same_coords) { 3896852b71a7SToby Isaac PetscCall(PetscSectionSetDof(newSection, cell, 0)); 3897852b71a7SToby Isaac PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, 0)); 3898852b71a7SToby Isaac } else { 3899852b71a7SToby Isaac PetscCall(PetscSectionSetDof(newSection, cell, cSize)); 3900852b71a7SToby Isaac PetscCall(PetscSectionSetFieldDof(newSection, cell, 0, cSize)); 3901852b71a7SToby Isaac } 3902852b71a7SToby Isaac PetscCall(DMPlexVecRestoreClosure(plex, oldSection, cVecOld, cell, &cSize, &values)); 3903852b71a7SToby Isaac } 39043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3905852b71a7SToby Isaac } 3906852b71a7SToby Isaac 3907d71ae5a4SJacob Faibussowitsch static PetscErrorCode PforestLocalizeCell(DM plex, PetscInt cDim, DM_Forest_pforest *pforest, PetscSection newSection, PetscInt cell, PetscInt coarsePoint, p4est_quadrant_t *quad, PetscScalar coords[]) 3908d71ae5a4SJacob Faibussowitsch { 3909852b71a7SToby Isaac PetscInt cdof, off; 3910852b71a7SToby Isaac 3911852b71a7SToby Isaac PetscFunctionBegin; 3912852b71a7SToby Isaac PetscCall(PetscSectionGetDof(newSection, cell, &cdof)); 39133ba16761SJacob Faibussowitsch if (!cdof) PetscFunctionReturn(PETSC_SUCCESS); 3914852b71a7SToby Isaac 3915852b71a7SToby Isaac PetscCall(PetscSectionGetOffset(newSection, cell, &off)); 3916852b71a7SToby Isaac for (PetscInt c = 0, pos = off; c < P4EST_CHILDREN; c++) { 3917852b71a7SToby Isaac p4est_qcoord_t quad_coords[3]; 3918852b71a7SToby Isaac p4est_qcoord_t h = P4EST_QUADRANT_LEN(quad->level); 3919852b71a7SToby Isaac double corner_coords[3]; 3920852b71a7SToby Isaac PetscInt corner = PetscVertToP4estVert[c]; 3921852b71a7SToby Isaac 3922852b71a7SToby Isaac quad_coords[0] = quad->x; 3923852b71a7SToby Isaac quad_coords[1] = quad->y; 3924852b71a7SToby Isaac #ifdef P4_TO_P8 3925852b71a7SToby Isaac quad_coords[2] = quad->z; 3926852b71a7SToby Isaac #endif 3927ad540459SPierre Jolivet for (int d = 0; d < 3; d++) quad_coords[d] += (corner & (1 << d)) ? h : 0; 3928852b71a7SToby Isaac #ifndef P4_TO_P8 3929648bc8c4SBarry Smith PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], corner_coords)); 3930852b71a7SToby Isaac #else 3931648bc8c4SBarry Smith PetscCallP4est(p4est_qcoord_to_vertex, (pforest->forest->connectivity, coarsePoint, quad_coords[0], quad_coords[1], quad_coords[2], corner_coords)); 3932852b71a7SToby Isaac #endif 3933ad540459SPierre Jolivet for (PetscInt d = 0; d < PetscMin(cDim, 3); d++) coords[pos++] = corner_coords[d]; 3934ad540459SPierre Jolivet for (PetscInt d = PetscMin(cDim, 3); d < cDim; d++) coords[pos++] = 0.; 3935852b71a7SToby Isaac } 39363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3937852b71a7SToby Isaac } 3938852b71a7SToby Isaac 3939d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestLocalizeCoordinates(DM dm, DM plex) 3940d71ae5a4SJacob Faibussowitsch { 39410a96aa3bSJed Brown DM_Forest *forest; 39420a96aa3bSJed Brown DM_Forest_pforest *pforest; 39436858538eSMatthew G. Knepley DM base, cdm, cdmCell; 3944852b71a7SToby Isaac Vec cVec, cVecOld; 3945852b71a7SToby Isaac PetscSection oldSection, newSection; 39460a96aa3bSJed Brown PetscScalar *coords2; 39476858538eSMatthew G. Knepley const PetscReal *L; 39480a96aa3bSJed Brown PetscInt cLocalStart, cLocalEnd, coarsePoint; 3949852b71a7SToby Isaac PetscInt cDim, newStart, newEnd; 3950852b71a7SToby Isaac PetscInt v, vStart, vEnd, cp, cStart, cEnd, cEndInterior; 39510a96aa3bSJed Brown p4est_topidx_t flt, llt, t; 39520a96aa3bSJed Brown p4est_tree_t *trees; 39536858538eSMatthew G. Knepley PetscBool baseLocalized = PETSC_FALSE; 39540a96aa3bSJed Brown 39550a96aa3bSJed Brown PetscFunctionBegin; 39564fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, NULL, NULL, &L)); 39570a96aa3bSJed Brown /* we localize on all cells if we don't have a base DM or the base DM coordinates have not been localized */ 39589566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cDim)); 39599566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 39606858538eSMatthew G. Knepley if (base) PetscCall(DMGetCoordinatesLocalized(base, &baseLocalized)); 39610a96aa3bSJed Brown if (!baseLocalized) base = NULL; 39623ba16761SJacob Faibussowitsch if (!baseLocalized && !L) PetscFunctionReturn(PETSC_SUCCESS); 39639566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &newStart, &newEnd)); 39640a96aa3bSJed Brown 39659566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newSection)); 39669566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newSection, 1)); 39679566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newSection, 0, cDim)); 39689566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newSection, newStart, newEnd)); 39690a96aa3bSJed Brown 39709566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(plex, &oldSection)); 39719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(plex, 0, &vStart, &vEnd)); 3972852b71a7SToby Isaac PetscCall(DMGetCoordinatesLocal(plex, &cVecOld)); 39730a96aa3bSJed Brown 39740a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 39750a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 39760a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 39770a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 39780a96aa3bSJed Brown flt = pforest->forest->first_local_tree; 39790a96aa3bSJed Brown llt = pforest->forest->last_local_tree; 39800a96aa3bSJed Brown trees = (p4est_tree_t *)pforest->forest->trees->array; 39810a96aa3bSJed Brown 39829566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex, 0, &cStart, &cEnd)); 39832827ebadSStefano Zampini PetscCall(DMPlexGetCellTypeStratum(plex, DM_POLYTOPE_FV_GHOST, &cEndInterior, NULL)); 39840a96aa3bSJed Brown cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 3985852b71a7SToby Isaac cp = 0; 39860a96aa3bSJed Brown if (cLocalStart > 0) { 39870a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 3988852b71a7SToby Isaac PetscInt cell; 39890a96aa3bSJed Brown 3990852b71a7SToby Isaac for (cell = 0; cell < cLocalStart; ++cell, cp++) { 3991852b71a7SToby Isaac p4est_quadrant_t *quad = &ghosts[cell]; 3992852b71a7SToby Isaac 39930a96aa3bSJed Brown coarsePoint = quad->p.which_tree; 3994852b71a7SToby Isaac PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad)); 39950a96aa3bSJed Brown } 39960a96aa3bSJed Brown } 39970a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 3998*f4f49eeaSPierre Jolivet p4est_tree_t *tree = &trees[t]; 39990a96aa3bSJed Brown PetscInt offset = cLocalStart + tree->quadrants_offset; 40000a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 4001852b71a7SToby Isaac p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 40020a96aa3bSJed Brown PetscInt i; 40030a96aa3bSJed Brown 40040a96aa3bSJed Brown if (!numQuads) continue; 40050a96aa3bSJed Brown coarsePoint = t; 4006852b71a7SToby Isaac for (i = 0; i < numQuads; i++, cp++) { 4007852b71a7SToby Isaac PetscInt cell = i + offset; 4008852b71a7SToby Isaac p4est_quadrant_t *quad = &quads[i]; 40090a96aa3bSJed Brown 4010852b71a7SToby Isaac PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad)); 40110a96aa3bSJed Brown } 40120a96aa3bSJed Brown } 40130a96aa3bSJed Brown if (cLocalEnd - cLocalStart < cEnd - cStart) { 40140a96aa3bSJed Brown p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 40150a96aa3bSJed Brown PetscInt numGhosts = (PetscInt)pforest->ghost->ghosts.elem_count; 40160a96aa3bSJed Brown PetscInt count; 40170a96aa3bSJed Brown 4018852b71a7SToby Isaac for (count = 0; count < numGhosts - cLocalStart; count++, cp++) { 40190a96aa3bSJed Brown p4est_quadrant_t *quad = &ghosts[count + cLocalStart]; 40200a96aa3bSJed Brown coarsePoint = quad->p.which_tree; 4021852b71a7SToby Isaac PetscInt cell = count + cLocalEnd; 40220a96aa3bSJed Brown 4023852b71a7SToby Isaac PetscCall(PforestCheckLocalizeCell(plex, cDim, cVecOld, pforest, oldSection, newSection, cell, coarsePoint, quad)); 40240a96aa3bSJed Brown } 40250a96aa3bSJed Brown } 4026852b71a7SToby Isaac PetscAssert(cp == cEnd - cStart, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected number of fine cells %" PetscInt_FMT " != %" PetscInt_FMT, cp, cEnd - cStart); 40270a96aa3bSJed Brown 40289566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newSection)); 40296858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(plex, &cdm)); 40306858538eSMatthew G. Knepley PetscCall(DMClone(cdm, &cdmCell)); 40316858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateDM(plex, cdmCell)); 40326858538eSMatthew G. Knepley PetscCall(DMDestroy(&cdmCell)); 40336858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateSection(plex, cDim, newSection)); 40349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &v)); 40359566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &cVec)); 40369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)cVec, "coordinates")); 40379566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(cVec, cDim)); 40389566063dSJacob Faibussowitsch PetscCall(VecSetSizes(cVec, v, PETSC_DETERMINE)); 40399566063dSJacob Faibussowitsch PetscCall(VecSetType(cVec, VECSTANDARD)); 40409566063dSJacob Faibussowitsch PetscCall(VecSet(cVec, PETSC_MIN_REAL)); 40410a96aa3bSJed Brown 40420a96aa3bSJed Brown /* Localize coordinates on cells if needed */ 40436858538eSMatthew G. Knepley PetscCall(VecGetArray(cVec, &coords2)); 4044852b71a7SToby Isaac cp = 0; 4045852b71a7SToby Isaac if (cLocalStart > 0) { 4046852b71a7SToby Isaac p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 4047852b71a7SToby Isaac PetscInt cell; 4048852b71a7SToby Isaac 4049852b71a7SToby Isaac for (cell = 0; cell < cLocalStart; ++cell, cp++) { 4050852b71a7SToby Isaac p4est_quadrant_t *quad = &ghosts[cell]; 4051852b71a7SToby Isaac 4052852b71a7SToby Isaac coarsePoint = quad->p.which_tree; 4053852b71a7SToby Isaac PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2)); 4054852b71a7SToby Isaac } 4055852b71a7SToby Isaac } 40560a96aa3bSJed Brown for (t = flt; t <= llt; t++) { 4057*f4f49eeaSPierre Jolivet p4est_tree_t *tree = &trees[t]; 40580a96aa3bSJed Brown PetscInt offset = cLocalStart + tree->quadrants_offset; 40590a96aa3bSJed Brown PetscInt numQuads = (PetscInt)tree->quadrants.elem_count; 4060852b71a7SToby Isaac p4est_quadrant_t *quads = (p4est_quadrant_t *)tree->quadrants.array; 4061852b71a7SToby Isaac PetscInt i; 40620a96aa3bSJed Brown 40630a96aa3bSJed Brown if (!numQuads) continue; 4064852b71a7SToby Isaac coarsePoint = t; 4065852b71a7SToby Isaac for (i = 0; i < numQuads; i++, cp++) { 4066852b71a7SToby Isaac PetscInt cell = i + offset; 40670a96aa3bSJed Brown p4est_quadrant_t *quad = &quads[i]; 40680a96aa3bSJed Brown 4069852b71a7SToby Isaac PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2)); 4070852b71a7SToby Isaac } 4071852b71a7SToby Isaac } 4072852b71a7SToby Isaac if (cLocalEnd - cLocalStart < cEnd - cStart) { 4073852b71a7SToby Isaac p4est_quadrant_t *ghosts = (p4est_quadrant_t *)pforest->ghost->ghosts.array; 4074852b71a7SToby Isaac PetscInt numGhosts = (PetscInt)pforest->ghost->ghosts.elem_count; 4075852b71a7SToby Isaac PetscInt count; 40760a96aa3bSJed Brown 4077852b71a7SToby Isaac for (count = 0; count < numGhosts - cLocalStart; count++, cp++) { 4078852b71a7SToby Isaac p4est_quadrant_t *quad = &ghosts[count + cLocalStart]; 4079852b71a7SToby Isaac coarsePoint = quad->p.which_tree; 4080852b71a7SToby Isaac PetscInt cell = count + cLocalEnd; 40810a96aa3bSJed Brown 4082852b71a7SToby Isaac PetscCall(PforestLocalizeCell(plex, cDim, pforest, newSection, cell, coarsePoint, quad, coords2)); 40830a96aa3bSJed Brown } 40840a96aa3bSJed Brown } 40859566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cVec, &coords2)); 40866858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(plex, cVec)); 40879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 40889566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 40893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 40900a96aa3bSJed Brown } 40910a96aa3bSJed Brown 40920a96aa3bSJed Brown #define DMForestClearAdaptivityForest_pforest _append_pforest(DMForestClearAdaptivityForest) 4093d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestClearAdaptivityForest_pforest(DM dm) 4094d71ae5a4SJacob Faibussowitsch { 40950a96aa3bSJed Brown DM_Forest *forest; 40960a96aa3bSJed Brown DM_Forest_pforest *pforest; 40970a96aa3bSJed Brown 40980a96aa3bSJed Brown PetscFunctionBegin; 40990a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 41000a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 4101*f4f49eeaSPierre Jolivet PetscCall(PetscSFDestroy(&pforest->pointAdaptToSelfSF)); 4102*f4f49eeaSPierre Jolivet PetscCall(PetscSFDestroy(&pforest->pointSelfToAdaptSF)); 41039566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointAdaptToSelfCids)); 41049566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->pointSelfToAdaptCids)); 41053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41060a96aa3bSJed Brown } 41070a96aa3bSJed Brown 4108d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvert_pforest_plex(DM dm, DMType newtype, DM *plex) 4109d71ae5a4SJacob Faibussowitsch { 41100a96aa3bSJed Brown DM_Forest *forest; 41110a96aa3bSJed Brown DM_Forest_pforest *pforest; 41120a96aa3bSJed Brown DM refTree, newPlex, base; 41130a96aa3bSJed Brown PetscInt adjDim, adjCodim, coordDim; 41140a96aa3bSJed Brown MPI_Comm comm; 41150a96aa3bSJed Brown PetscBool isPforest; 41160a96aa3bSJed Brown PetscInt dim; 41170a96aa3bSJed Brown PetscInt overlap; 41180a96aa3bSJed Brown p4est_connect_type_t ctype; 41190a96aa3bSJed Brown p4est_locidx_t first_local_quad = -1; 41200a96aa3bSJed Brown sc_array_t *points_per_dim, *cone_sizes, *cones, *cone_orientations, *coords, *children, *parents, *childids, *leaves, *remotes; 41210a96aa3bSJed Brown PetscSection parentSection; 41220a96aa3bSJed Brown PetscSF pointSF; 41230a96aa3bSJed Brown size_t zz, count; 41240a96aa3bSJed Brown PetscInt pStart, pEnd; 41250a96aa3bSJed Brown DMLabel ghostLabelBase = NULL; 41260a96aa3bSJed Brown 41270a96aa3bSJed Brown PetscFunctionBegin; 41280a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 41290a96aa3bSJed Brown comm = PetscObjectComm((PetscObject)dm); 41309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPFOREST, &isPforest)); 413128b400f6SJacob Faibussowitsch PetscCheck(isPforest, comm, PETSC_ERR_ARG_WRONG, "Expected DM type %s, got %s", DMPFOREST, ((PetscObject)dm)->type_name); 41329566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 413363a3b9bcSJacob Faibussowitsch PetscCheck(dim == P4EST_DIM, comm, PETSC_ERR_ARG_WRONG, "Expected DM dimension %d, got %" PetscInt_FMT, P4EST_DIM, dim); 41340a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 41350a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 41369566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 413748a46eb9SPierre Jolivet if (base) PetscCall(DMGetLabel(base, "ghost", &ghostLabelBase)); 41380a96aa3bSJed Brown if (!pforest->plex) { 41390a96aa3bSJed Brown PetscMPIInt size; 41400a96aa3bSJed Brown 41419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 41429566063dSJacob Faibussowitsch PetscCall(DMCreate(comm, &newPlex)); 41439566063dSJacob Faibussowitsch PetscCall(DMSetType(newPlex, DMPLEX)); 41449566063dSJacob Faibussowitsch PetscCall(DMSetMatType(newPlex, dm->mattype)); 41450a96aa3bSJed Brown /* share labels */ 41469566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, newPlex, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 41479566063dSJacob Faibussowitsch PetscCall(DMForestGetAdjacencyDimension(dm, &adjDim)); 41489566063dSJacob Faibussowitsch PetscCall(DMForestGetAdjacencyCodimension(dm, &adjCodim)); 41499566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 41500a96aa3bSJed Brown if (adjDim == 0) { 41510a96aa3bSJed Brown ctype = P4EST_CONNECT_FULL; 41520a96aa3bSJed Brown } else if (adjCodim == 1) { 41530a96aa3bSJed Brown ctype = P4EST_CONNECT_FACE; 41540a96aa3bSJed Brown #if defined(P4_TO_P8) 41550a96aa3bSJed Brown } else if (adjDim == 1) { 41560a96aa3bSJed Brown ctype = P8EST_CONNECT_EDGE; 41570a96aa3bSJed Brown #endif 41580a96aa3bSJed Brown } else { 415963a3b9bcSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid adjacency dimension %" PetscInt_FMT, adjDim); 41600a96aa3bSJed Brown } 416163a3b9bcSJacob Faibussowitsch PetscCheck(ctype == P4EST_CONNECT_FULL, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Adjacency dimension %" PetscInt_FMT " / codimension %" PetscInt_FMT " not supported yet", adjDim, adjCodim); 41629566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm, &overlap)); 416360667520SVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(newPlex, NULL, overlap)); 41640a96aa3bSJed Brown 41650a96aa3bSJed Brown points_per_dim = sc_array_new(sizeof(p4est_locidx_t)); 41660a96aa3bSJed Brown cone_sizes = sc_array_new(sizeof(p4est_locidx_t)); 41670a96aa3bSJed Brown cones = sc_array_new(sizeof(p4est_locidx_t)); 41680a96aa3bSJed Brown cone_orientations = sc_array_new(sizeof(p4est_locidx_t)); 41690a96aa3bSJed Brown coords = sc_array_new(3 * sizeof(double)); 41700a96aa3bSJed Brown children = sc_array_new(sizeof(p4est_locidx_t)); 41710a96aa3bSJed Brown parents = sc_array_new(sizeof(p4est_locidx_t)); 41720a96aa3bSJed Brown childids = sc_array_new(sizeof(p4est_locidx_t)); 41730a96aa3bSJed Brown leaves = sc_array_new(sizeof(p4est_locidx_t)); 41740a96aa3bSJed Brown remotes = sc_array_new(2 * sizeof(p4est_locidx_t)); 41750a96aa3bSJed Brown 4176792fecdfSBarry Smith PetscCallP4est(p4est_get_plex_data_ext, (pforest->forest, &pforest->ghost, &pforest->lnodes, ctype, (int)((size > 1) ? overlap : 0), &first_local_quad, points_per_dim, cone_sizes, cones, cone_orientations, coords, children, parents, childids, leaves, remotes, 1)); 41770a96aa3bSJed Brown 41780a96aa3bSJed Brown pforest->cLocalStart = (PetscInt)first_local_quad; 41790a96aa3bSJed Brown pforest->cLocalEnd = pforest->cLocalStart + (PetscInt)pforest->forest->local_num_quadrants; 41809566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(points_per_dim)); 41819566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_sizes)); 41829566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cones)); 41839566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(cone_orientations)); 41849566063dSJacob Faibussowitsch PetscCall(coords_double_to_PetscScalar(coords, coordDim)); 41859566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(children)); 41869566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(parents)); 41879566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(childids)); 41889566063dSJacob Faibussowitsch PetscCall(locidx_to_PetscInt(leaves)); 41899566063dSJacob Faibussowitsch PetscCall(locidx_pair_to_PetscSFNode(remotes)); 41900a96aa3bSJed Brown 41919566063dSJacob Faibussowitsch PetscCall(DMSetDimension(newPlex, P4EST_DIM)); 41929566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(newPlex, coordDim)); 41939566063dSJacob Faibussowitsch PetscCall(DMPlexSetMaxProjectionHeight(newPlex, P4EST_DIM - 1)); 41949566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromDAG(newPlex, P4EST_DIM, (PetscInt *)points_per_dim->array, (PetscInt *)cone_sizes->array, (PetscInt *)cones->array, (PetscInt *)cone_orientations->array, (PetscScalar *)coords->array)); 41959566063dSJacob Faibussowitsch PetscCall(DMPlexConvertOldOrientations_Internal(newPlex)); 41969566063dSJacob Faibussowitsch PetscCall(DMCreateReferenceTree_pforest(comm, &refTree)); 41979566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(newPlex, refTree)); 41989566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &parentSection)); 41999566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(newPlex, &pStart, &pEnd)); 42009566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(parentSection, pStart, pEnd)); 42010a96aa3bSJed Brown count = children->elem_count; 42020a96aa3bSJed Brown for (zz = 0; zz < count; zz++) { 42030a96aa3bSJed Brown PetscInt child = *((PetscInt *)sc_array_index(children, zz)); 42040a96aa3bSJed Brown 42059566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(parentSection, child, 1)); 42060a96aa3bSJed Brown } 42079566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(parentSection)); 42089566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(newPlex, parentSection, (PetscInt *)parents->array, (PetscInt *)childids->array)); 42099566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&parentSection)); 42109566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &pointSF)); 42110a96aa3bSJed Brown /* 42120a96aa3bSJed Brown These arrays defining the sf are from the p4est library, but the code there shows the leaves being populated in increasing order. 42130a96aa3bSJed Brown https://gitlab.com/petsc/petsc/merge_requests/2248#note_240186391 42140a96aa3bSJed Brown */ 42159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(pointSF, pEnd - pStart, (PetscInt)leaves->elem_count, (PetscInt *)leaves->array, PETSC_COPY_VALUES, (PetscSFNode *)remotes->array, PETSC_COPY_VALUES)); 42169566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(newPlex, pointSF)); 42179566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(dm, pointSF)); 42180a96aa3bSJed Brown { 42190a96aa3bSJed Brown DM coordDM; 42200a96aa3bSJed Brown 42219566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(newPlex, &coordDM)); 42229566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(coordDM, pointSF)); 42230a96aa3bSJed Brown } 42249566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&pointSF)); 42250a96aa3bSJed Brown sc_array_destroy(points_per_dim); 42260a96aa3bSJed Brown sc_array_destroy(cone_sizes); 42270a96aa3bSJed Brown sc_array_destroy(cones); 42280a96aa3bSJed Brown sc_array_destroy(cone_orientations); 42290a96aa3bSJed Brown sc_array_destroy(coords); 42300a96aa3bSJed Brown sc_array_destroy(children); 42310a96aa3bSJed Brown sc_array_destroy(parents); 42320a96aa3bSJed Brown sc_array_destroy(childids); 42330a96aa3bSJed Brown sc_array_destroy(leaves); 42340a96aa3bSJed Brown sc_array_destroy(remotes); 42350a96aa3bSJed Brown 42360a96aa3bSJed Brown { 42374fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 42380a96aa3bSJed Brown 42394fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 42404fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(newPlex, maxCell, Lstart, L)); 42419566063dSJacob Faibussowitsch PetscCall(DMPforestLocalizeCoordinates(dm, newPlex)); 42420a96aa3bSJed Brown } 42430a96aa3bSJed Brown 42440a96aa3bSJed Brown if (overlap > 0) { /* the p4est routine can't set all of the coordinates in its routine if there is overlap */ 42450a96aa3bSJed Brown Vec coordsGlobal, coordsLocal; 42460a96aa3bSJed Brown const PetscScalar *globalArray; 42470a96aa3bSJed Brown PetscScalar *localArray; 42480a96aa3bSJed Brown PetscSF coordSF; 42490a96aa3bSJed Brown DM coordDM; 42500a96aa3bSJed Brown 42519566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(newPlex, &coordDM)); 42529566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(coordDM, &coordSF)); 42539566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(newPlex, &coordsGlobal)); 42549566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(newPlex, &coordsLocal)); 42559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordsGlobal, &globalArray)); 42569566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordsLocal, &localArray)); 42579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coordSF, MPIU_SCALAR, globalArray, localArray, MPI_REPLACE)); 42589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coordSF, MPIU_SCALAR, globalArray, localArray, MPI_REPLACE)); 42599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordsLocal, &localArray)); 42609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordsGlobal, &globalArray)); 42619566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(newPlex, coordsLocal)); 42620a96aa3bSJed Brown } 42639566063dSJacob Faibussowitsch PetscCall(DMPforestMapCoordinates(dm, newPlex)); 42640a96aa3bSJed Brown 42650a96aa3bSJed Brown pforest->plex = newPlex; 42660a96aa3bSJed Brown 42670a96aa3bSJed Brown /* copy labels */ 42689566063dSJacob Faibussowitsch PetscCall(DMPforestLabelsFinalize(dm, newPlex)); 42690a96aa3bSJed Brown 42700a96aa3bSJed Brown if (ghostLabelBase || pforest->ghostName) { /* we have to do this after copying labels because the labels drive the construction of ghost cells */ 42710a96aa3bSJed Brown PetscInt numAdded; 42720a96aa3bSJed Brown DM newPlexGhosted; 42730a96aa3bSJed Brown void *ctx; 42740a96aa3bSJed Brown 42759566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells(newPlex, pforest->ghostName, &numAdded, &newPlexGhosted)); 42769566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(newPlex, &ctx)); 42779566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(newPlexGhosted, ctx)); 42780a96aa3bSJed Brown /* we want the sf for the ghost dm to be the one for the p4est dm as well */ 42799566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(newPlexGhosted, &pointSF)); 42809566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(dm, pointSF)); 42819566063dSJacob Faibussowitsch PetscCall(DMDestroy(&newPlex)); 42829566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(newPlexGhosted, refTree)); 42839566063dSJacob Faibussowitsch PetscCall(DMForestClearAdaptivityForest_pforest(dm)); 42840a96aa3bSJed Brown newPlex = newPlexGhosted; 42850a96aa3bSJed Brown 42860a96aa3bSJed Brown /* share the labels back */ 42879566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(dm)); 42889566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(newPlex, dm, PETSC_OWN_POINTER, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 42890a96aa3bSJed Brown pforest->plex = newPlex; 42900a96aa3bSJed Brown } 42919566063dSJacob Faibussowitsch PetscCall(DMDestroy(&refTree)); 42920a96aa3bSJed Brown if (dm->setfromoptionscalled) { 4293d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)newPlex); 4294dbbe0bcdSBarry Smith PetscCall(DMSetFromOptions_NonRefinement_Plex(newPlex, PetscOptionsObject)); 4295dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)newPlex, PetscOptionsObject)); 4296d0609cedSBarry Smith PetscOptionsEnd(); 42970a96aa3bSJed Brown } 42989566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(newPlex, NULL, "-dm_p4est_plex_view")); 42990a96aa3bSJed Brown { 43006858538eSMatthew G. Knepley DM cdm; 43010a96aa3bSJed Brown PetscSection coordsSec; 43020a96aa3bSJed Brown Vec coords; 43030a96aa3bSJed Brown PetscInt cDim; 43040a96aa3bSJed Brown 43059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(newPlex, &cDim)); 43069566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(newPlex, &coordsSec)); 43079566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dm, cDim, coordsSec)); 43089566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(newPlex, &coords)); 43099566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dm, coords)); 43106858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(newPlex, &cdm)); 43116858538eSMatthew G. Knepley if (cdm) PetscCall(DMSetCellCoordinateDM(dm, cdm)); 43126858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateSection(newPlex, &coordsSec)); 43136858538eSMatthew G. Knepley if (coordsSec) PetscCall(DMSetCellCoordinateSection(dm, cDim, coordsSec)); 43146858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(newPlex, &coords)); 43156858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinatesLocal(dm, coords)); 43160a96aa3bSJed Brown } 4317cdf84abbSMatthew G. Knepley } else { 4318cdf84abbSMatthew G. Knepley PetscCall(DMCopyLabels(dm, pforest->plex, PETSC_OWN_POINTER, PETSC_FALSE, DM_COPY_LABELS_REPLACE)); 43190a96aa3bSJed Brown } 43200a96aa3bSJed Brown newPlex = pforest->plex; 43210a96aa3bSJed Brown if (plex) { 43229566063dSJacob Faibussowitsch PetscCall(DMClone(newPlex, plex)); 43236858538eSMatthew G. Knepley #if 0 43249566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(newPlex,&coordDM)); 43259566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDM(*plex,coordDM)); 43266858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(newPlex,&coordDM)); 43276858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateDM(*plex,coordDM)); 43286858538eSMatthew G. Knepley #endif 43299566063dSJacob Faibussowitsch PetscCall(DMShareDiscretization(dm, *plex)); 43300a96aa3bSJed Brown } 43313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43320a96aa3bSJed Brown } 43330a96aa3bSJed Brown 4334d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetFromOptions_pforest(DM dm, PetscOptionItems *PetscOptionsObject) 4335d71ae5a4SJacob Faibussowitsch { 43360a96aa3bSJed Brown DM_Forest_pforest *pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 43370a96aa3bSJed Brown char stringBuffer[256]; 43380a96aa3bSJed Brown PetscBool flg; 43390a96aa3bSJed Brown 43400a96aa3bSJed Brown PetscFunctionBegin; 4341dbbe0bcdSBarry Smith PetscCall(DMSetFromOptions_Forest(dm, PetscOptionsObject)); 4342d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "DM" P4EST_STRING " options"); 4343217f96c1SStefano Zampini PetscCall(PetscOptionsBool("-dm_p4est_partition_for_coarsening", "partition forest to allow for coarsening", "DMP4estSetPartitionForCoarsening", pforest->partition_for_coarsening, &pforest->partition_for_coarsening, NULL)); 43449566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-dm_p4est_ghost_label_name", "the name of the ghost label when converting from a DMPlex", NULL, NULL, stringBuffer, sizeof(stringBuffer), &flg)); 4345d0609cedSBarry Smith PetscOptionsHeadEnd(); 43460a96aa3bSJed Brown if (flg) { 43479566063dSJacob Faibussowitsch PetscCall(PetscFree(pforest->ghostName)); 43489566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(stringBuffer, &pforest->ghostName)); 43490a96aa3bSJed Brown } 43503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43510a96aa3bSJed Brown } 43520a96aa3bSJed Brown 43530a96aa3bSJed Brown #if !defined(P4_TO_P8) 43540a96aa3bSJed Brown #define DMPforestGetPartitionForCoarsening DMP4estGetPartitionForCoarsening 43550a96aa3bSJed Brown #define DMPforestSetPartitionForCoarsening DMP4estSetPartitionForCoarsening 43560a96aa3bSJed Brown #else 43570a96aa3bSJed Brown #define DMPforestGetPartitionForCoarsening DMP8estGetPartitionForCoarsening 43580a96aa3bSJed Brown #define DMPforestSetPartitionForCoarsening DMP8estSetPartitionForCoarsening 43590a96aa3bSJed Brown #endif 43600a96aa3bSJed Brown 4361d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMPforestGetPartitionForCoarsening(DM dm, PetscBool *flg) 4362d71ae5a4SJacob Faibussowitsch { 43630a96aa3bSJed Brown DM_Forest_pforest *pforest; 43640a96aa3bSJed Brown 43650a96aa3bSJed Brown PetscFunctionBegin; 43660a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43670a96aa3bSJed Brown pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 43680a96aa3bSJed Brown *flg = pforest->partition_for_coarsening; 43693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43700a96aa3bSJed Brown } 43710a96aa3bSJed Brown 4372d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMPforestSetPartitionForCoarsening(DM dm, PetscBool flg) 4373d71ae5a4SJacob Faibussowitsch { 43740a96aa3bSJed Brown DM_Forest_pforest *pforest; 43750a96aa3bSJed Brown 43760a96aa3bSJed Brown PetscFunctionBegin; 43770a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43780a96aa3bSJed Brown pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 43790a96aa3bSJed Brown pforest->partition_for_coarsening = flg; 43803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43810a96aa3bSJed Brown } 43820a96aa3bSJed Brown 4383d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPforestGetPlex(DM dm, DM *plex) 4384d71ae5a4SJacob Faibussowitsch { 43850a96aa3bSJed Brown DM_Forest_pforest *pforest; 43860a96aa3bSJed Brown 43870a96aa3bSJed Brown PetscFunctionBegin; 43880a96aa3bSJed Brown if (plex) *plex = NULL; 43899566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 43900a96aa3bSJed Brown pforest = (DM_Forest_pforest *)((DM_Forest *)dm->data)->data; 439148a46eb9SPierre Jolivet if (!pforest->plex) PetscCall(DMConvert_pforest_plex(dm, DMPLEX, NULL)); 43929566063dSJacob Faibussowitsch PetscCall(DMShareDiscretization(dm, pforest->plex)); 43930a96aa3bSJed Brown if (plex) *plex = pforest->plex; 43943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43950a96aa3bSJed Brown } 43960a96aa3bSJed Brown 43970a96aa3bSJed Brown #define DMCreateInterpolation_pforest _append_pforest(DMCreateInterpolation) 4398d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateInterpolation_pforest(DM dmCoarse, DM dmFine, Mat *interpolation, Vec *scaling) 4399d71ae5a4SJacob Faibussowitsch { 44000a96aa3bSJed Brown PetscSection gsc, gsf; 44010a96aa3bSJed Brown PetscInt m, n; 44020a96aa3bSJed Brown DM cdm; 44030a96aa3bSJed Brown 44040a96aa3bSJed Brown PetscFunctionBegin; 44059566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 44069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &m)); 44079566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 44089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &n)); 44090a96aa3bSJed Brown 44109566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)dmFine), interpolation)); 44119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*interpolation, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 44129566063dSJacob Faibussowitsch PetscCall(MatSetType(*interpolation, MATAIJ)); 44130a96aa3bSJed Brown 44149566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 441508401ef6SPierre Jolivet PetscCheck(cdm == dmCoarse, PetscObjectComm((PetscObject)dmFine), PETSC_ERR_SUP, "Only interpolation from coarse DM for now"); 44160a96aa3bSJed Brown 44170a96aa3bSJed Brown { 44180a96aa3bSJed Brown DM plexF, plexC; 44190a96aa3bSJed Brown PetscSF sf; 44200a96aa3bSJed Brown PetscInt *cids; 44210a96aa3bSJed Brown PetscInt dofPerDim[4] = {1, 1, 1, 1}; 44220a96aa3bSJed Brown 44239566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmCoarse, &plexC)); 44249566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmFine, &plexF)); 44259566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids)); 44269566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 44279566063dSJacob Faibussowitsch PetscCall(DMPlexComputeInterpolatorTree(plexC, plexF, sf, cids, *interpolation)); 44289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 44299566063dSJacob Faibussowitsch PetscCall(PetscFree(cids)); 44300a96aa3bSJed Brown } 44319566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*interpolation, NULL, "-interp_mat_view")); 44320a96aa3bSJed Brown /* Use naive scaling */ 44339566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolationScale(dmCoarse, dmFine, *interpolation, scaling)); 44343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44350a96aa3bSJed Brown } 44360a96aa3bSJed Brown 44370a96aa3bSJed Brown #define DMCreateInjection_pforest _append_pforest(DMCreateInjection) 4438d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateInjection_pforest(DM dmCoarse, DM dmFine, Mat *injection) 4439d71ae5a4SJacob Faibussowitsch { 44400a96aa3bSJed Brown PetscSection gsc, gsf; 44410a96aa3bSJed Brown PetscInt m, n; 44420a96aa3bSJed Brown DM cdm; 44430a96aa3bSJed Brown 44440a96aa3bSJed Brown PetscFunctionBegin; 44459566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 44469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &n)); 44479566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 44489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &m)); 44490a96aa3bSJed Brown 44509566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)dmFine), injection)); 44519566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*injection, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 44529566063dSJacob Faibussowitsch PetscCall(MatSetType(*injection, MATAIJ)); 44530a96aa3bSJed Brown 44549566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 445508401ef6SPierre Jolivet PetscCheck(cdm == dmCoarse, PetscObjectComm((PetscObject)dmFine), PETSC_ERR_SUP, "Only injection to coarse DM for now"); 44560a96aa3bSJed Brown 44570a96aa3bSJed Brown { 44580a96aa3bSJed Brown DM plexF, plexC; 44590a96aa3bSJed Brown PetscSF sf; 44600a96aa3bSJed Brown PetscInt *cids; 44610a96aa3bSJed Brown PetscInt dofPerDim[4] = {1, 1, 1, 1}; 44620a96aa3bSJed Brown 44639566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmCoarse, &plexC)); 44649566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmFine, &plexF)); 44659566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmCoarse, dmFine, dofPerDim, &sf, PETSC_TRUE, &cids)); 44669566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 44679566063dSJacob Faibussowitsch PetscCall(DMPlexComputeInjectorTree(plexC, plexF, sf, cids, *injection)); 44689566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 44699566063dSJacob Faibussowitsch PetscCall(PetscFree(cids)); 44700a96aa3bSJed Brown } 44719566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*injection, NULL, "-inject_mat_view")); 44720a96aa3bSJed Brown /* Use naive scaling */ 44733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44740a96aa3bSJed Brown } 44750a96aa3bSJed Brown 44760a96aa3bSJed Brown #define DMForestTransferVecFromBase_pforest _append_pforest(DMForestTransferVecFromBase) 4477d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestTransferVecFromBase_pforest(DM dm, Vec vecIn, Vec vecOut) 4478d71ae5a4SJacob Faibussowitsch { 44790a96aa3bSJed Brown DM dmIn, dmVecIn, base, basec, plex, coarseDM; 44800a96aa3bSJed Brown DM *hierarchy; 44810a96aa3bSJed Brown PetscSF sfRed = NULL; 44820a96aa3bSJed Brown PetscDS ds; 44830a96aa3bSJed Brown Vec vecInLocal, vecOutLocal; 44840a96aa3bSJed Brown DMLabel subpointMap; 44850a96aa3bSJed Brown PetscInt minLevel, mh, n_hi, i; 44860a96aa3bSJed Brown PetscBool hiforest, *hierarchy_forest; 44870a96aa3bSJed Brown 44880a96aa3bSJed Brown PetscFunctionBegin; 44899566063dSJacob Faibussowitsch PetscCall(VecGetDM(vecIn, &dmVecIn)); 44909566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmVecIn, &ds)); 449128b400f6SJacob Faibussowitsch PetscCheck(ds, PetscObjectComm((PetscObject)dmVecIn), PETSC_ERR_SUP, "Cannot transfer without a PetscDS object"); 44920a96aa3bSJed Brown { /* we cannot stick user contexts into function callbacks for DMProjectFieldLocal! */ 44930a96aa3bSJed Brown PetscSection section; 44940a96aa3bSJed Brown PetscInt Nf; 44950a96aa3bSJed Brown 44969566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmVecIn, §ion)); 44979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 449863a3b9bcSJacob Faibussowitsch PetscCheck(Nf <= 3, PetscObjectComm((PetscObject)dmVecIn), PETSC_ERR_SUP, "Number of fields %" PetscInt_FMT " are currently not supported! Send an email at petsc-dev@mcs.anl.gov", Nf); 44990a96aa3bSJed Brown } 45009566063dSJacob Faibussowitsch PetscCall(DMForestGetMinimumRefinement(dm, &minLevel)); 450163a3b9bcSJacob Faibussowitsch PetscCheck(!minLevel, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Cannot transfer with minimum refinement set to %" PetscInt_FMT ". Rerun with DMForestSetMinimumRefinement(dm,0)", minLevel); 45029566063dSJacob Faibussowitsch PetscCall(DMForestGetBaseDM(dm, &base)); 450328b400f6SJacob Faibussowitsch PetscCheck(base, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Missing base DM"); 45040a96aa3bSJed Brown 45059566063dSJacob Faibussowitsch PetscCall(VecSet(vecOut, 0.0)); 45060a96aa3bSJed Brown if (dmVecIn == base) { /* sequential runs */ 45079566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)vecIn)); 45080a96aa3bSJed Brown } else { 45090a96aa3bSJed Brown PetscSection secIn, secInRed; 45100a96aa3bSJed Brown Vec vecInRed, vecInLocal; 45110a96aa3bSJed Brown 45129566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)base, "_base_migration_sf", (PetscObject *)&sfRed)); 451328b400f6SJacob Faibussowitsch PetscCheck(sfRed, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not the DM set with DMForestSetBaseDM()"); 45149566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmVecIn), &secInRed)); 45159566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &vecInRed)); 45169566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmVecIn, &secIn)); 45179566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmVecIn, &vecInLocal)); 45189566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmVecIn, vecIn, INSERT_VALUES, vecInLocal)); 45199566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmVecIn, vecIn, INSERT_VALUES, vecInLocal)); 45209566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dmVecIn, sfRed, secIn, vecInLocal, secInRed, vecInRed)); 45219566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmVecIn, &vecInLocal)); 45229566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&secInRed)); 45230a96aa3bSJed Brown vecIn = vecInRed; 45240a96aa3bSJed Brown } 45250a96aa3bSJed Brown 45260a96aa3bSJed Brown /* we first search through the AdaptivityForest hierarchy 45270a96aa3bSJed Brown once we found the first disconnected forest, we upsweep the DM hierarchy */ 45280a96aa3bSJed Brown hiforest = PETSC_TRUE; 45290a96aa3bSJed Brown 45300a96aa3bSJed Brown /* upsweep to the coarsest DM */ 45310a96aa3bSJed Brown n_hi = 0; 45320a96aa3bSJed Brown coarseDM = dm; 45330a96aa3bSJed Brown do { 45340a96aa3bSJed Brown PetscBool isforest; 45350a96aa3bSJed Brown 45360a96aa3bSJed Brown dmIn = coarseDM; 45370a96aa3bSJed Brown /* need to call DMSetUp to have the hierarchy recursively setup */ 45389566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmIn)); 45399566063dSJacob Faibussowitsch PetscCall(DMIsForest(dmIn, &isforest)); 454028b400f6SJacob Faibussowitsch PetscCheck(isforest, PetscObjectComm((PetscObject)dmIn), PETSC_ERR_SUP, "Cannot currently transfer through a mixed hierarchy! Found DM type %s", ((PetscObject)dmIn)->type_name); 45410a96aa3bSJed Brown coarseDM = NULL; 454248a46eb9SPierre Jolivet if (hiforest) PetscCall(DMForestGetAdaptivityForest(dmIn, &coarseDM)); 45430a96aa3bSJed Brown if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */ 45440a96aa3bSJed Brown hiforest = PETSC_FALSE; 45459566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmIn, &coarseDM)); 45460a96aa3bSJed Brown } 45470a96aa3bSJed Brown n_hi++; 45480a96aa3bSJed Brown } while (coarseDM); 45490a96aa3bSJed Brown 45509566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(n_hi, &hierarchy, n_hi, &hierarchy_forest)); 45510a96aa3bSJed Brown 45520a96aa3bSJed Brown i = 0; 45530a96aa3bSJed Brown hiforest = PETSC_TRUE; 45540a96aa3bSJed Brown coarseDM = dm; 45550a96aa3bSJed Brown do { 45560a96aa3bSJed Brown dmIn = coarseDM; 45570a96aa3bSJed Brown coarseDM = NULL; 455848a46eb9SPierre Jolivet if (hiforest) PetscCall(DMForestGetAdaptivityForest(dmIn, &coarseDM)); 45590a96aa3bSJed Brown if (!coarseDM) { /* DMForest hierarchy ended, we keep upsweeping through the DM hierarchy */ 45600a96aa3bSJed Brown hiforest = PETSC_FALSE; 45619566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmIn, &coarseDM)); 45620a96aa3bSJed Brown } 45630a96aa3bSJed Brown i++; 45640a96aa3bSJed Brown hierarchy[n_hi - i] = dmIn; 45650a96aa3bSJed Brown } while (coarseDM); 45660a96aa3bSJed Brown 45670a96aa3bSJed Brown /* project base vector on the coarsest forest (minimum refinement = 0) */ 45689566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmIn, &plex)); 45690a96aa3bSJed Brown 45700a96aa3bSJed Brown /* Check this plex is compatible with the base */ 45710a96aa3bSJed Brown { 45720a96aa3bSJed Brown IS gnum[2]; 45730a96aa3bSJed Brown PetscInt ncells[2], gncells[2]; 45740a96aa3bSJed Brown 45759566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellNumbering(base, &gnum[0])); 45769566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellNumbering(plex, &gnum[1])); 45779566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(gnum[0], NULL, &ncells[0])); 45789566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(gnum[1], NULL, &ncells[1])); 45791c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(ncells, gncells, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 458063a3b9bcSJacob Faibussowitsch PetscCheck(gncells[0] == gncells[1], PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Invalid number of base cells! Expected %" PetscInt_FMT ", found %" PetscInt_FMT, gncells[0] + 1, gncells[1] + 1); 45810a96aa3bSJed Brown } 45820a96aa3bSJed Brown 45839566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmIn, "_forest_base_subpoint_map", &subpointMap)); 458428b400f6SJacob Faibussowitsch PetscCheck(subpointMap, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing _forest_base_subpoint_map label"); 45850a96aa3bSJed Brown 45869566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxProjectionHeight(base, &mh)); 45879566063dSJacob Faibussowitsch PetscCall(DMPlexSetMaxProjectionHeight(plex, mh)); 45880a96aa3bSJed Brown 45899566063dSJacob Faibussowitsch PetscCall(DMClone(base, &basec)); 45909566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dmVecIn, basec)); 45910a96aa3bSJed Brown if (sfRed) { 45929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)vecIn)); 45930a96aa3bSJed Brown vecInLocal = vecIn; 45940a96aa3bSJed Brown } else { 45959566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(basec, &vecInLocal)); 45969566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(basec, vecIn, INSERT_VALUES, vecInLocal)); 45979566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(basec, vecIn, INSERT_VALUES, vecInLocal)); 45980a96aa3bSJed Brown } 45990a96aa3bSJed Brown 46009566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmIn, &vecOutLocal)); 46010a96aa3bSJed Brown { /* get degrees of freedom ordered onto dmIn */ 46020a96aa3bSJed Brown PetscSF basetocoarse; 46030a96aa3bSJed Brown PetscInt bStart, bEnd, nroots; 46040a96aa3bSJed Brown PetscInt iStart, iEnd, nleaves, leaf; 46050a96aa3bSJed Brown PetscMPIInt rank; 46060a96aa3bSJed Brown PetscSFNode *remotes; 46070a96aa3bSJed Brown PetscSection secIn, secOut; 46080a96aa3bSJed Brown PetscInt *remoteOffsets; 46090a96aa3bSJed Brown PetscSF transferSF; 46100a96aa3bSJed Brown const PetscScalar *inArray; 46110a96aa3bSJed Brown PetscScalar *outArray; 46120a96aa3bSJed Brown 46139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)basec), &rank)); 46149566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(basec, &bStart, &bEnd)); 46150a96aa3bSJed Brown nroots = PetscMax(bEnd - bStart, 0); 46169566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plex, &iStart, &iEnd)); 46170a96aa3bSJed Brown nleaves = PetscMax(iEnd - iStart, 0); 46180a96aa3bSJed Brown 46199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &remotes)); 46200a96aa3bSJed Brown for (leaf = iStart; leaf < iEnd; leaf++) { 46210a96aa3bSJed Brown PetscInt index; 46220a96aa3bSJed Brown 46230a96aa3bSJed Brown remotes[leaf - iStart].rank = rank; 46249566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, leaf, &index)); 46250a96aa3bSJed Brown remotes[leaf - iStart].index = index; 46260a96aa3bSJed Brown } 46270a96aa3bSJed Brown 46289566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)basec), &basetocoarse)); 46299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(basetocoarse, nroots, nleaves, NULL, PETSC_OWN_POINTER, remotes, PETSC_OWN_POINTER)); 46309566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(basetocoarse)); 46319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(basec, &secIn)); 46329566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmIn), &secOut)); 46339566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(basetocoarse, secIn, &remoteOffsets, secOut)); 46349566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(basetocoarse, secIn, remoteOffsets, secOut, &transferSF)); 46359566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 46369566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vecOutLocal, &outArray)); 46379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vecInLocal, &inArray)); 46389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(transferSF, MPIU_SCALAR, inArray, outArray, MPI_REPLACE)); 46399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(transferSF, MPIU_SCALAR, inArray, outArray, MPI_REPLACE)); 46409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vecInLocal, &inArray)); 46419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vecOutLocal, &outArray)); 46429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&transferSF)); 46439566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&secOut)); 46449566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&basetocoarse)); 46450a96aa3bSJed Brown } 46469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vecInLocal)); 46479566063dSJacob Faibussowitsch PetscCall(DMDestroy(&basec)); 46489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vecIn)); 46490a96aa3bSJed Brown 46500a96aa3bSJed Brown /* output */ 46510a96aa3bSJed Brown if (n_hi > 1) { /* downsweep the stored hierarchy */ 46520a96aa3bSJed Brown Vec vecOut1, vecOut2; 46530a96aa3bSJed Brown DM fineDM; 46540a96aa3bSJed Brown 46559566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmIn, &vecOut1)); 46569566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobal(dmIn, vecOutLocal, INSERT_VALUES, vecOut1)); 46579566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmIn, &vecOutLocal)); 46580a96aa3bSJed Brown for (i = 1; i < n_hi - 1; i++) { 46590a96aa3bSJed Brown fineDM = hierarchy[i]; 46609566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(fineDM, &vecOut2)); 46619566063dSJacob Faibussowitsch PetscCall(DMForestTransferVec(dmIn, vecOut1, fineDM, vecOut2, PETSC_TRUE, 0.0)); 46629566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmIn, &vecOut1)); 46630a96aa3bSJed Brown vecOut1 = vecOut2; 46640a96aa3bSJed Brown dmIn = fineDM; 46650a96aa3bSJed Brown } 46669566063dSJacob Faibussowitsch PetscCall(DMForestTransferVec(dmIn, vecOut1, dm, vecOut, PETSC_TRUE, 0.0)); 46679566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmIn, &vecOut1)); 46680a96aa3bSJed Brown } else { 46699566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobal(dmIn, vecOutLocal, INSERT_VALUES, vecOut)); 46709566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmIn, &vecOutLocal)); 46710a96aa3bSJed Brown } 46729566063dSJacob Faibussowitsch PetscCall(PetscFree2(hierarchy, hierarchy_forest)); 46733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46740a96aa3bSJed Brown } 46750a96aa3bSJed Brown 46760a96aa3bSJed Brown #define DMForestTransferVec_pforest _append_pforest(DMForestTransferVec) 4677d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestTransferVec_pforest(DM dmIn, Vec vecIn, DM dmOut, Vec vecOut, PetscBool useBCs, PetscReal time) 4678d71ae5a4SJacob Faibussowitsch { 46790a96aa3bSJed Brown DM adaptIn, adaptOut, plexIn, plexOut; 46800a96aa3bSJed Brown DM_Forest *forestIn, *forestOut, *forestAdaptIn, *forestAdaptOut; 46810a96aa3bSJed Brown PetscInt dofPerDim[] = {1, 1, 1, 1}; 46820a96aa3bSJed Brown PetscSF inSF = NULL, outSF = NULL; 46830a96aa3bSJed Brown PetscInt *inCids = NULL, *outCids = NULL; 46840a96aa3bSJed Brown DMAdaptFlag purposeIn, purposeOut; 46850a96aa3bSJed Brown 46860a96aa3bSJed Brown PetscFunctionBegin; 46870a96aa3bSJed Brown forestOut = (DM_Forest *)dmOut->data; 46880a96aa3bSJed Brown forestIn = (DM_Forest *)dmIn->data; 46890a96aa3bSJed Brown 46909566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmOut, &adaptOut)); 46919566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmOut, &purposeOut)); 46920a96aa3bSJed Brown forestAdaptOut = adaptOut ? (DM_Forest *)adaptOut->data : NULL; 46930a96aa3bSJed Brown 46949566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityForest(dmIn, &adaptIn)); 46959566063dSJacob Faibussowitsch PetscCall(DMForestGetAdaptivityPurpose(dmIn, &purposeIn)); 46960a96aa3bSJed Brown forestAdaptIn = adaptIn ? (DM_Forest *)adaptIn->data : NULL; 46970a96aa3bSJed Brown 46980a96aa3bSJed Brown if (forestAdaptOut == forestIn) { 46990a96aa3bSJed Brown switch (purposeOut) { 47000a96aa3bSJed Brown case DM_ADAPT_REFINE: 47019566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids)); 47029566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47030a96aa3bSJed Brown break; 47040a96aa3bSJed Brown case DM_ADAPT_COARSEN: 47050a96aa3bSJed Brown case DM_ADAPT_COARSEN_LAST: 47069566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_TRUE, &outCids)); 47079566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47080a96aa3bSJed Brown break; 47090a96aa3bSJed Brown default: 47109566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids)); 47119566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_FALSE, &outCids)); 47129566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47139566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47140a96aa3bSJed Brown } 47150a96aa3bSJed Brown } else if (forestAdaptIn == forestOut) { 47160a96aa3bSJed Brown switch (purposeIn) { 47170a96aa3bSJed Brown case DM_ADAPT_REFINE: 47189566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_TRUE, &inCids)); 47199566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47200a96aa3bSJed Brown break; 47210a96aa3bSJed Brown case DM_ADAPT_COARSEN: 47220a96aa3bSJed Brown case DM_ADAPT_COARSEN_LAST: 47239566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids)); 47249566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47250a96aa3bSJed Brown break; 47260a96aa3bSJed Brown default: 47279566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmIn, dmOut, dofPerDim, &inSF, PETSC_TRUE, &inCids)); 47289566063dSJacob Faibussowitsch PetscCall(DMPforestGetTransferSF_Internal(dmOut, dmIn, dofPerDim, &outSF, PETSC_FALSE, &outCids)); 47299566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(inSF)); 47309566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(outSF)); 47310a96aa3bSJed Brown } 47320a96aa3bSJed Brown } else SETERRQ(PetscObjectComm((PetscObject)dmIn), PETSC_ERR_SUP, "Only support transfer from pre-adaptivity to post-adaptivity right now"); 47339566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmIn, &plexIn)); 47349566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dmOut, &plexOut)); 47350a96aa3bSJed Brown 47369566063dSJacob Faibussowitsch PetscCall(DMPlexTransferVecTree(plexIn, vecIn, plexOut, vecOut, inSF, outSF, inCids, outCids, useBCs, time)); 47379566063dSJacob Faibussowitsch PetscCall(PetscFree(inCids)); 47389566063dSJacob Faibussowitsch PetscCall(PetscFree(outCids)); 47399566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&inSF)); 47409566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&outSF)); 47419566063dSJacob Faibussowitsch PetscCall(PetscFree(inCids)); 47429566063dSJacob Faibussowitsch PetscCall(PetscFree(outCids)); 47433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47440a96aa3bSJed Brown } 47450a96aa3bSJed Brown 47460a96aa3bSJed Brown #define DMCreateCoordinateDM_pforest _append_pforest(DMCreateCoordinateDM) 4747d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateCoordinateDM_pforest(DM dm, DM *cdm) 4748d71ae5a4SJacob Faibussowitsch { 47490a96aa3bSJed Brown DM plex; 47500a96aa3bSJed Brown 47510a96aa3bSJed Brown PetscFunctionBegin; 47520a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47539566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 47549566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(plex, cdm)); 47559566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*cdm)); 47563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47570a96aa3bSJed Brown } 47580a96aa3bSJed Brown 47590a96aa3bSJed Brown #define VecViewLocal_pforest _append_pforest(VecViewLocal) 4760d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecViewLocal_pforest(Vec vec, PetscViewer viewer) 4761d71ae5a4SJacob Faibussowitsch { 47620a96aa3bSJed Brown DM dm, plex; 47630a96aa3bSJed Brown 47640a96aa3bSJed Brown PetscFunctionBegin; 47659566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4766217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 47679566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 47689566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 47699566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local(vec, viewer)); 47709566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4771217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 47723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47730a96aa3bSJed Brown } 47740a96aa3bSJed Brown 47750a96aa3bSJed Brown #define VecView_pforest _append_pforest(VecView) 4776d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecView_pforest(Vec vec, PetscViewer viewer) 4777d71ae5a4SJacob Faibussowitsch { 47780a96aa3bSJed Brown DM dm, plex; 47790a96aa3bSJed Brown 47800a96aa3bSJed Brown PetscFunctionBegin; 47819566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4782217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 47839566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 47849566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 47859566063dSJacob Faibussowitsch PetscCall(VecView_Plex(vec, viewer)); 47869566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4787217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 47883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47890a96aa3bSJed Brown } 47900a96aa3bSJed Brown 47910a96aa3bSJed Brown #define VecView_pforest_Native _infix_pforest(VecView, _Native) 4792d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecView_pforest_Native(Vec vec, PetscViewer viewer) 4793d71ae5a4SJacob Faibussowitsch { 47940a96aa3bSJed Brown DM dm, plex; 47950a96aa3bSJed Brown 47960a96aa3bSJed Brown PetscFunctionBegin; 47979566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4798217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 47999566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48009566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 48019566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Native(vec, viewer)); 48029566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4803217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 48043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48050a96aa3bSJed Brown } 48060a96aa3bSJed Brown 48070a96aa3bSJed Brown #define VecLoad_pforest _append_pforest(VecLoad) 4808d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecLoad_pforest(Vec vec, PetscViewer viewer) 4809d71ae5a4SJacob Faibussowitsch { 48100a96aa3bSJed Brown DM dm, plex; 48110a96aa3bSJed Brown 48120a96aa3bSJed Brown PetscFunctionBegin; 48139566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4814217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 48159566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48169566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 48179566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex(vec, viewer)); 48189566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4819217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 48203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48210a96aa3bSJed Brown } 48220a96aa3bSJed Brown 48230a96aa3bSJed Brown #define VecLoad_pforest_Native _infix_pforest(VecLoad, _Native) 4824d71ae5a4SJacob Faibussowitsch static PetscErrorCode VecLoad_pforest_Native(Vec vec, PetscViewer viewer) 4825d71ae5a4SJacob Faibussowitsch { 48260a96aa3bSJed Brown DM dm, plex; 48270a96aa3bSJed Brown 48280a96aa3bSJed Brown PetscFunctionBegin; 48299566063dSJacob Faibussowitsch PetscCall(VecGetDM(vec, &dm)); 4830217f96c1SStefano Zampini PetscCall(PetscObjectReference((PetscObject)dm)); 48319566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48329566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, plex)); 48339566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex_Native(vec, viewer)); 48349566063dSJacob Faibussowitsch PetscCall(VecSetDM(vec, dm)); 4835217f96c1SStefano Zampini PetscCall(DMDestroy(&dm)); 48363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48370a96aa3bSJed Brown } 48380a96aa3bSJed Brown 48390a96aa3bSJed Brown #define DMCreateGlobalVector_pforest _append_pforest(DMCreateGlobalVector) 4840d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateGlobalVector_pforest(DM dm, Vec *vec) 4841d71ae5a4SJacob Faibussowitsch { 48420a96aa3bSJed Brown PetscFunctionBegin; 48439566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector_Section_Private(dm, vec)); 48449566063dSJacob Faibussowitsch /* PetscCall(VecSetOperation(*vec, VECOP_DUPLICATE, (void(*)(void)) VecDuplicate_MPI_DM)); */ 48459566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_VIEW, (void (*)(void))VecView_pforest)); 48469566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_VIEWNATIVE, (void (*)(void))VecView_pforest_Native)); 48479566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_LOAD, (void (*)(void))VecLoad_pforest)); 48489566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_LOADNATIVE, (void (*)(void))VecLoad_pforest_Native)); 48493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48500a96aa3bSJed Brown } 48510a96aa3bSJed Brown 48520a96aa3bSJed Brown #define DMCreateLocalVector_pforest _append_pforest(DMCreateLocalVector) 4853d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateLocalVector_pforest(DM dm, Vec *vec) 4854d71ae5a4SJacob Faibussowitsch { 48550a96aa3bSJed Brown PetscFunctionBegin; 48569566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector_Section_Private(dm, vec)); 48579566063dSJacob Faibussowitsch PetscCall(VecSetOperation(*vec, VECOP_VIEW, (void (*)(void))VecViewLocal_pforest)); 48583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48590a96aa3bSJed Brown } 48600a96aa3bSJed Brown 48610a96aa3bSJed Brown #define DMCreateMatrix_pforest _append_pforest(DMCreateMatrix) 4862d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateMatrix_pforest(DM dm, Mat *mat) 4863d71ae5a4SJacob Faibussowitsch { 48640a96aa3bSJed Brown DM plex; 48650a96aa3bSJed Brown 48660a96aa3bSJed Brown PetscFunctionBegin; 48670a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48689566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48690a96aa3bSJed Brown if (plex->prealloc_only != dm->prealloc_only) plex->prealloc_only = dm->prealloc_only; /* maybe this should go into forest->plex */ 48702495aca6SStefano Zampini PetscCall(DMSetMatType(plex, dm->mattype)); 48719566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(plex, mat)); 48729566063dSJacob Faibussowitsch PetscCall(MatSetDM(*mat, dm)); 48733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48740a96aa3bSJed Brown } 48750a96aa3bSJed Brown 48760a96aa3bSJed Brown #define DMProjectFunctionLocal_pforest _append_pforest(DMProjectFunctionLocal) 4877d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMProjectFunctionLocal_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 4878d71ae5a4SJacob Faibussowitsch { 48790a96aa3bSJed Brown DM plex; 48800a96aa3bSJed Brown 48810a96aa3bSJed Brown PetscFunctionBegin; 48820a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48839566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48849566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(plex, time, funcs, ctxs, mode, localX)); 48853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48860a96aa3bSJed Brown } 48870a96aa3bSJed Brown 48880a96aa3bSJed Brown #define DMProjectFunctionLabelLocal_pforest _append_pforest(DMProjectFunctionLabelLocal) 4889d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMProjectFunctionLabelLocal_pforest(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Ncc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 4890d71ae5a4SJacob Faibussowitsch { 48910a96aa3bSJed Brown DM plex; 48920a96aa3bSJed Brown 48930a96aa3bSJed Brown PetscFunctionBegin; 48940a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48959566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 48969566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(plex, time, label, numIds, ids, Ncc, comps, funcs, ctxs, mode, localX)); 48973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48980a96aa3bSJed Brown } 48990a96aa3bSJed Brown 49000a96aa3bSJed Brown #define DMProjectFieldLocal_pforest _append_pforest(DMProjectFieldLocal) 4901d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal_pforest(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 4902d71ae5a4SJacob Faibussowitsch { 49030a96aa3bSJed Brown DM plex; 49040a96aa3bSJed Brown 49050a96aa3bSJed Brown PetscFunctionBegin; 49060a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49079566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49089566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLocal(plex, time, localU, funcs, mode, localX)); 49093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49100a96aa3bSJed Brown } 49110a96aa3bSJed Brown 49120a96aa3bSJed Brown #define DMComputeL2Diff_pforest _append_pforest(DMComputeL2Diff) 4913d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 4914d71ae5a4SJacob Faibussowitsch { 49150a96aa3bSJed Brown DM plex; 49160a96aa3bSJed Brown 49170a96aa3bSJed Brown PetscFunctionBegin; 49180a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49199566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49209566063dSJacob Faibussowitsch PetscCall(DMComputeL2Diff(plex, time, funcs, ctxs, X, diff)); 49213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49220a96aa3bSJed Brown } 49230a96aa3bSJed Brown 49240a96aa3bSJed Brown #define DMComputeL2FieldDiff_pforest _append_pforest(DMComputeL2FieldDiff) 4925d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_pforest(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 4926d71ae5a4SJacob Faibussowitsch { 49270a96aa3bSJed Brown DM plex; 49280a96aa3bSJed Brown 49290a96aa3bSJed Brown PetscFunctionBegin; 49300a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49319566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49329566063dSJacob Faibussowitsch PetscCall(DMComputeL2FieldDiff(plex, time, funcs, ctxs, X, diff)); 49333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49340a96aa3bSJed Brown } 49350a96aa3bSJed Brown 49360a96aa3bSJed Brown #define DMCreatelocalsection_pforest _append_pforest(DMCreatelocalsection) 4937d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreatelocalsection_pforest(DM dm) 4938d71ae5a4SJacob Faibussowitsch { 49390a96aa3bSJed Brown DM plex; 49400a96aa3bSJed Brown PetscSection section; 49410a96aa3bSJed Brown 49420a96aa3bSJed Brown PetscFunctionBegin; 49430a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49449566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49459566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex, §ion)); 49469566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 49473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49480a96aa3bSJed Brown } 49490a96aa3bSJed Brown 49500a96aa3bSJed Brown #define DMCreateDefaultConstraints_pforest _append_pforest(DMCreateDefaultConstraints) 4951d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateDefaultConstraints_pforest(DM dm) 4952d71ae5a4SJacob Faibussowitsch { 49530a96aa3bSJed Brown DM plex; 49540a96aa3bSJed Brown Mat mat; 495579769bd5SJed Brown Vec bias; 49560a96aa3bSJed Brown PetscSection section; 49570a96aa3bSJed Brown 49580a96aa3bSJed Brown PetscFunctionBegin; 49590a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49609566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49619566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(plex, §ion, &mat, &bias)); 49629566063dSJacob Faibussowitsch PetscCall(DMSetDefaultConstraints(dm, section, mat, bias)); 49633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49640a96aa3bSJed Brown } 49650a96aa3bSJed Brown 49660a96aa3bSJed Brown #define DMGetDimPoints_pforest _append_pforest(DMGetDimPoints) 4967d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGetDimPoints_pforest(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 4968d71ae5a4SJacob Faibussowitsch { 49690a96aa3bSJed Brown DM plex; 49700a96aa3bSJed Brown 49710a96aa3bSJed Brown PetscFunctionBegin; 49720a96aa3bSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49739566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 49749566063dSJacob Faibussowitsch PetscCall(DMGetDimPoints(plex, dim, cStart, cEnd)); 49753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49760a96aa3bSJed Brown } 49770a96aa3bSJed Brown 49780a96aa3bSJed Brown /* Need to forward declare */ 49790a96aa3bSJed Brown #define DMInitialize_pforest _append_pforest(DMInitialize) 49800a96aa3bSJed Brown static PetscErrorCode DMInitialize_pforest(DM dm); 49810a96aa3bSJed Brown 49820a96aa3bSJed Brown #define DMClone_pforest _append_pforest(DMClone) 4983d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMClone_pforest(DM dm, DM *newdm) 4984d71ae5a4SJacob Faibussowitsch { 49850a96aa3bSJed Brown PetscFunctionBegin; 49869566063dSJacob Faibussowitsch PetscCall(DMClone_Forest(dm, newdm)); 49879566063dSJacob Faibussowitsch PetscCall(DMInitialize_pforest(*newdm)); 49883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49890a96aa3bSJed Brown } 49900a96aa3bSJed Brown 49910a96aa3bSJed Brown #define DMForestCreateCellChart_pforest _append_pforest(DMForestCreateCellChart) 4992d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestCreateCellChart_pforest(DM dm, PetscInt *cStart, PetscInt *cEnd) 4993d71ae5a4SJacob Faibussowitsch { 49940a96aa3bSJed Brown DM_Forest *forest; 49950a96aa3bSJed Brown DM_Forest_pforest *pforest; 49960a96aa3bSJed Brown PetscInt overlap; 49970a96aa3bSJed Brown 49980a96aa3bSJed Brown PetscFunctionBegin; 49999566063dSJacob Faibussowitsch PetscCall(DMSetUp(dm)); 50000a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 50010a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 50020a96aa3bSJed Brown *cStart = 0; 50039566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm, &overlap)); 50040a96aa3bSJed Brown if (overlap && pforest->ghost) { 50050a96aa3bSJed Brown *cEnd = pforest->forest->local_num_quadrants + pforest->ghost->proc_offsets[pforest->forest->mpisize]; 50060a96aa3bSJed Brown } else { 50070a96aa3bSJed Brown *cEnd = pforest->forest->local_num_quadrants; 50080a96aa3bSJed Brown } 50093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50100a96aa3bSJed Brown } 50110a96aa3bSJed Brown 50120a96aa3bSJed Brown #define DMForestCreateCellSF_pforest _append_pforest(DMForestCreateCellSF) 5013d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMForestCreateCellSF_pforest(DM dm, PetscSF *cellSF) 5014d71ae5a4SJacob Faibussowitsch { 50150a96aa3bSJed Brown DM_Forest *forest; 50160a96aa3bSJed Brown DM_Forest_pforest *pforest; 50170a96aa3bSJed Brown PetscMPIInt rank; 50180a96aa3bSJed Brown PetscInt overlap; 50190a96aa3bSJed Brown PetscInt cStart, cEnd, cLocalStart, cLocalEnd; 50200a96aa3bSJed Brown PetscInt nRoots, nLeaves, *mine = NULL; 50210a96aa3bSJed Brown PetscSFNode *remote = NULL; 50220a96aa3bSJed Brown PetscSF sf; 50230a96aa3bSJed Brown 50240a96aa3bSJed Brown PetscFunctionBegin; 50259566063dSJacob Faibussowitsch PetscCall(DMForestGetCellChart(dm, &cStart, &cEnd)); 50260a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 50270a96aa3bSJed Brown pforest = (DM_Forest_pforest *)forest->data; 50280a96aa3bSJed Brown nRoots = cEnd - cStart; 50290a96aa3bSJed Brown cLocalStart = pforest->cLocalStart; 50300a96aa3bSJed Brown cLocalEnd = pforest->cLocalEnd; 50310a96aa3bSJed Brown nLeaves = 0; 50329566063dSJacob Faibussowitsch PetscCall(DMForestGetPartitionOverlap(dm, &overlap)); 50339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 50340a96aa3bSJed Brown if (overlap && pforest->ghost) { 50350a96aa3bSJed Brown PetscSFNode *mirror; 50360a96aa3bSJed Brown p4est_quadrant_t *mirror_array; 50370a96aa3bSJed Brown PetscInt nMirror, nGhostPre, nSelf, q; 50380a96aa3bSJed Brown void **mirrorPtrs; 50390a96aa3bSJed Brown 50400a96aa3bSJed Brown nMirror = (PetscInt)pforest->ghost->mirrors.elem_count; 50410a96aa3bSJed Brown nSelf = cLocalEnd - cLocalStart; 50420a96aa3bSJed Brown nLeaves = nRoots - nSelf; 50430a96aa3bSJed Brown nGhostPre = (PetscInt)pforest->ghost->proc_offsets[rank]; 50449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &mine)); 50459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &remote)); 50469566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nMirror, &mirror, nMirror, &mirrorPtrs)); 50470a96aa3bSJed Brown mirror_array = (p4est_quadrant_t *)pforest->ghost->mirrors.array; 50480a96aa3bSJed Brown for (q = 0; q < nMirror; q++) { 5049*f4f49eeaSPierre Jolivet p4est_quadrant_t *mir = &mirror_array[q]; 50500a96aa3bSJed Brown 50510a96aa3bSJed Brown mirror[q].rank = rank; 50520a96aa3bSJed Brown mirror[q].index = (PetscInt)mir->p.piggy3.local_num + cLocalStart; 5053*f4f49eeaSPierre Jolivet mirrorPtrs[q] = (void *)&mirror[q]; 50540a96aa3bSJed Brown } 5055792fecdfSBarry Smith PetscCallP4est(p4est_ghost_exchange_custom, (pforest->forest, pforest->ghost, sizeof(PetscSFNode), mirrorPtrs, remote)); 50569566063dSJacob Faibussowitsch PetscCall(PetscFree2(mirror, mirrorPtrs)); 50570a96aa3bSJed Brown for (q = 0; q < nGhostPre; q++) mine[q] = q; 50580a96aa3bSJed Brown for (; q < nLeaves; q++) mine[q] = (q - nGhostPre) + cLocalEnd; 50590a96aa3bSJed Brown } 50609566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &sf)); 50619566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, nRoots, nLeaves, mine, PETSC_OWN_POINTER, remote, PETSC_OWN_POINTER)); 50620a96aa3bSJed Brown *cellSF = sf; 50633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50640a96aa3bSJed Brown } 50650a96aa3bSJed Brown 5066d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMCreateNeumannOverlap_pforest(DM dm, IS *ovl, Mat *J, PetscErrorCode (**setup)(Mat, PetscReal, Vec, Vec, PetscReal, IS, void *), void **setup_ctx) 5067d71ae5a4SJacob Faibussowitsch { 50680a96aa3bSJed Brown DM plex; 50690a96aa3bSJed Brown 50700a96aa3bSJed Brown PetscFunctionBegin; 50719566063dSJacob Faibussowitsch PetscCall(DMPforestGetPlex(dm, &plex)); 5072e4d5475eSStefano Zampini PetscCall(DMCopyAuxiliaryVec(dm, plex)); 50739566063dSJacob Faibussowitsch PetscCall(DMCreateNeumannOverlap_Plex(plex, ovl, J, setup, setup_ctx)); 5074e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(plex)); 50750a96aa3bSJed Brown if (!*setup) { 50769566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, "MatComputeNeumannOverlap_C", setup)); 507748a46eb9SPierre Jolivet if (*setup) PetscCall(PetscObjectCompose((PetscObject)*ovl, "_DM_Original_HPDDM", (PetscObject)dm)); 50780a96aa3bSJed Brown } 50793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50800a96aa3bSJed Brown } 50810a96aa3bSJed Brown 5082907a3e9cSStefano Zampini #define DMCreateDomainDecomposition_pforest _append_pforest(DMCreateDomainDecomposition) 5083907a3e9cSStefano Zampini static PetscErrorCode DMCreateDomainDecomposition_pforest(DM dm, PetscInt *nsub, char ***names, IS **innerises, IS **outerises, DM **dms) 5084907a3e9cSStefano Zampini { 5085907a3e9cSStefano Zampini DM plex; 5086907a3e9cSStefano Zampini 5087907a3e9cSStefano Zampini PetscFunctionBegin; 5088907a3e9cSStefano Zampini PetscCall(DMPforestGetPlex(dm, &plex)); 5089e4d5475eSStefano Zampini PetscCall(DMCopyAuxiliaryVec(dm, plex)); 5090907a3e9cSStefano Zampini PetscCall(DMCreateDomainDecomposition(plex, nsub, names, innerises, outerises, dms)); 5091e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(plex)); 5092907a3e9cSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 5093907a3e9cSStefano Zampini } 5094907a3e9cSStefano Zampini 5095907a3e9cSStefano Zampini #define DMCreateDomainDecompositionScatters_pforest _append_pforest(DMCreateDomainDecompositionScatters) 5096907a3e9cSStefano Zampini static PetscErrorCode DMCreateDomainDecompositionScatters_pforest(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **lscat) 5097907a3e9cSStefano Zampini { 5098907a3e9cSStefano Zampini DM plex; 5099907a3e9cSStefano Zampini 5100907a3e9cSStefano Zampini PetscFunctionBegin; 5101907a3e9cSStefano Zampini PetscCall(DMPforestGetPlex(dm, &plex)); 5102e4d5475eSStefano Zampini PetscCall(DMCopyAuxiliaryVec(dm, plex)); 5103907a3e9cSStefano Zampini PetscCall(DMCreateDomainDecompositionScatters(plex, n, subdms, iscat, oscat, lscat)); 5104907a3e9cSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 5105907a3e9cSStefano Zampini } 5106907a3e9cSStefano Zampini 5107d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMInitialize_pforest(DM dm) 5108d71ae5a4SJacob Faibussowitsch { 51090a96aa3bSJed Brown PetscFunctionBegin; 51100a96aa3bSJed Brown dm->ops->setup = DMSetUp_pforest; 51110a96aa3bSJed Brown dm->ops->view = DMView_pforest; 51120a96aa3bSJed Brown dm->ops->clone = DMClone_pforest; 51130a96aa3bSJed Brown dm->ops->createinterpolation = DMCreateInterpolation_pforest; 51140a96aa3bSJed Brown dm->ops->createinjection = DMCreateInjection_pforest; 51150a96aa3bSJed Brown dm->ops->setfromoptions = DMSetFromOptions_pforest; 51160a96aa3bSJed Brown dm->ops->createcoordinatedm = DMCreateCoordinateDM_pforest; 51170a96aa3bSJed Brown dm->ops->createglobalvector = DMCreateGlobalVector_pforest; 51180a96aa3bSJed Brown dm->ops->createlocalvector = DMCreateLocalVector_pforest; 51190a96aa3bSJed Brown dm->ops->creatematrix = DMCreateMatrix_pforest; 51200a96aa3bSJed Brown dm->ops->projectfunctionlocal = DMProjectFunctionLocal_pforest; 51210a96aa3bSJed Brown dm->ops->projectfunctionlabellocal = DMProjectFunctionLabelLocal_pforest; 51220a96aa3bSJed Brown dm->ops->projectfieldlocal = DMProjectFieldLocal_pforest; 51230a96aa3bSJed Brown dm->ops->createlocalsection = DMCreatelocalsection_pforest; 51240a96aa3bSJed Brown dm->ops->createdefaultconstraints = DMCreateDefaultConstraints_pforest; 51250a96aa3bSJed Brown dm->ops->computel2diff = DMComputeL2Diff_pforest; 51260a96aa3bSJed Brown dm->ops->computel2fielddiff = DMComputeL2FieldDiff_pforest; 51270a96aa3bSJed Brown dm->ops->getdimpoints = DMGetDimPoints_pforest; 5128907a3e9cSStefano Zampini dm->ops->createdomaindecomposition = DMCreateDomainDecomposition_pforest; 5129907a3e9cSStefano Zampini dm->ops->createddscatters = DMCreateDomainDecompositionScatters_pforest; 51300a96aa3bSJed Brown 51319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, PetscStringize(DMConvert_plex_pforest) "_C", DMConvert_plex_pforest)); 51329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, PetscStringize(DMConvert_pforest_plex) "_C", DMConvert_pforest_plex)); 51339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, "DMCreateNeumannOverlap_C", DMCreateNeumannOverlap_pforest)); 51349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm, "DMPlexGetOverlap_C", DMForestGetPartitionOverlap)); 51353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51360a96aa3bSJed Brown } 51370a96aa3bSJed Brown 51380a96aa3bSJed Brown #define DMCreate_pforest _append_pforest(DMCreate) 5139d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreate_pforest(DM dm) 5140d71ae5a4SJacob Faibussowitsch { 51410a96aa3bSJed Brown DM_Forest *forest; 51420a96aa3bSJed Brown DM_Forest_pforest *pforest; 51430a96aa3bSJed Brown 51440a96aa3bSJed Brown PetscFunctionBegin; 51459566063dSJacob Faibussowitsch PetscCall(PetscP4estInitialize()); 51469566063dSJacob Faibussowitsch PetscCall(DMCreate_Forest(dm)); 51479566063dSJacob Faibussowitsch PetscCall(DMInitialize_pforest(dm)); 51489566063dSJacob Faibussowitsch PetscCall(DMSetDimension(dm, P4EST_DIM)); 51490a96aa3bSJed Brown 51500a96aa3bSJed Brown /* set forest defaults */ 51519566063dSJacob Faibussowitsch PetscCall(DMForestSetTopology(dm, "unit")); 51529566063dSJacob Faibussowitsch PetscCall(DMForestSetMinimumRefinement(dm, 0)); 51539566063dSJacob Faibussowitsch PetscCall(DMForestSetInitialRefinement(dm, 0)); 51549566063dSJacob Faibussowitsch PetscCall(DMForestSetMaximumRefinement(dm, P4EST_QMAXLEVEL)); 51559566063dSJacob Faibussowitsch PetscCall(DMForestSetGradeFactor(dm, 2)); 51569566063dSJacob Faibussowitsch PetscCall(DMForestSetAdjacencyDimension(dm, 0)); 51579566063dSJacob Faibussowitsch PetscCall(DMForestSetPartitionOverlap(dm, 0)); 51580a96aa3bSJed Brown 51590a96aa3bSJed Brown /* create p4est data */ 51604dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&pforest)); 51610a96aa3bSJed Brown 51620a96aa3bSJed Brown forest = (DM_Forest *)dm->data; 51630a96aa3bSJed Brown forest->data = pforest; 51640a96aa3bSJed Brown forest->destroy = DMForestDestroy_pforest; 51650a96aa3bSJed Brown forest->ftemplate = DMForestTemplate_pforest; 51660a96aa3bSJed Brown forest->transfervec = DMForestTransferVec_pforest; 51670a96aa3bSJed Brown forest->transfervecfrombase = DMForestTransferVecFromBase_pforest; 51680a96aa3bSJed Brown forest->createcellchart = DMForestCreateCellChart_pforest; 51690a96aa3bSJed Brown forest->createcellsf = DMForestCreateCellSF_pforest; 51700a96aa3bSJed Brown forest->clearadaptivityforest = DMForestClearAdaptivityForest_pforest; 51710a96aa3bSJed Brown forest->getadaptivitysuccess = DMForestGetAdaptivitySuccess_pforest; 51720a96aa3bSJed Brown pforest->topo = NULL; 51730a96aa3bSJed Brown pforest->forest = NULL; 51740a96aa3bSJed Brown pforest->ghost = NULL; 51750a96aa3bSJed Brown pforest->lnodes = NULL; 51760a96aa3bSJed Brown pforest->partition_for_coarsening = PETSC_TRUE; 51770a96aa3bSJed Brown pforest->coarsen_hierarchy = PETSC_FALSE; 51780a96aa3bSJed Brown pforest->cLocalStart = -1; 51790a96aa3bSJed Brown pforest->cLocalEnd = -1; 51800a96aa3bSJed Brown pforest->labelsFinalized = PETSC_FALSE; 51810a96aa3bSJed Brown pforest->ghostName = NULL; 51823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51830a96aa3bSJed Brown } 51840a96aa3bSJed Brown 51850a96aa3bSJed Brown #endif /* defined(PETSC_HAVE_P4EST) */ 5186