xref: /petsc/src/dm/impls/moab/dmmbio.cxx (revision 4d86920da9ee67c835173a5dfffa1b3a52fd24ca)

#include <petsc/private/dmmbimpl.h> /*I  "petscdmmoab.h"   I*/
#include <petscdmmoab.h>

static PetscErrorCode DMMoab_GetWriteOptions_Private(PetscInt fsetid, PetscInt numproc, PetscInt dim, MoabWriteMode mode, PetscInt dbglevel, const char *dm_opts, const char *extra_opts, const char **write_opts)
{
  char *wopts;
  char  wopts_par[PETSC_MAX_PATH_LEN];
  char  wopts_parid[PETSC_MAX_PATH_LEN];
  char  wopts_dbg[PETSC_MAX_PATH_LEN];

  PetscFunctionBegin;
  PetscCall(PetscMalloc1(PETSC_MAX_PATH_LEN, &wopts));
  PetscCall(PetscMemzero(&wopts_par, PETSC_MAX_PATH_LEN));
  PetscCall(PetscMemzero(&wopts_parid, PETSC_MAX_PATH_LEN));
  PetscCall(PetscMemzero(&wopts_dbg, PETSC_MAX_PATH_LEN));

  // do parallel read unless only one processor
  if (numproc > 1) {
    PetscCall(PetscSNPrintf(wopts_par, PETSC_MAX_PATH_LEN, "PARALLEL=%s;", MoabWriteModes[mode]));
    if (fsetid >= 0) PetscCall(PetscSNPrintf(wopts_parid, PETSC_MAX_PATH_LEN, "PARALLEL_COMM=%d;", fsetid));
  }

  if (dbglevel) PetscCall(PetscSNPrintf(wopts_dbg, PETSC_MAX_PATH_LEN, "CPUTIME;DEBUG_IO=%d;", dbglevel));

  PetscCall(PetscSNPrintf(wopts, PETSC_MAX_PATH_LEN, "%s%s%s%s%s", wopts_par, wopts_parid, wopts_dbg, (extra_opts ? extra_opts : ""), (dm_opts ? dm_opts : "")));
  *write_opts = wopts;
  PetscFunctionReturn(PETSC_SUCCESS);
}

/*@C
  DMMoabOutput - Output the solution vectors that are stored in the DMMoab object as tags
  along with the complete mesh data structure in the native H5M or VTK format
  <http://ftp.mcs.anl.gov/pub/fathom/moab-docs/contents.html#fivetwo>.

  Collective

  Input Parameters:
+ dm           - the discretization manager object containing solution in MOAB tags.
. filename     - the name of the output file: e.g., poisson.h5m
- usrwriteopts - the parallel write options needed for serializing a MOAB mesh database. Can be NULL.

  Level: intermediate

  Notes:
  The H5M output file can be visualized directly with Paraview (if compiled with appropriate
  plugin) or converted with MOAB/tools/mbconvert to a VTK or Exodus file.

  This routine can also be used for check-pointing purposes to store a complete history of the
  solution along with any other necessary data to restart computations.

.seealso: `DMMoabLoadFromFile()`, `DMMoabSetGlobalFieldVector()`
@*/
PetscErrorCode DMMoabOutput(DM dm, const char *filename, const char *usrwriteopts)
{
  DM_Moab        *dmmoab;
  const char     *writeopts;
  PetscBool       isftype;
  moab::ErrorCode merr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  dmmoab = (DM_Moab *)(dm)->data;

  PetscCall(PetscStrendswith(filename, "h5m", &isftype));

  /* add mesh loading options specific to the DM */
  if (isftype) {
#ifdef MOAB_HAVE_MPI
    PetscCall(DMMoab_GetWriteOptions_Private(dmmoab->pcomm->get_id(), dmmoab->pcomm->size(), dmmoab->dim, dmmoab->write_mode, dmmoab->rw_dbglevel, dmmoab->extra_write_options, usrwriteopts, &writeopts));
#else
    PetscCall(DMMoab_GetWriteOptions_Private(0, 1, dmmoab->dim, dmmoab->write_mode, dmmoab->rw_dbglevel, dmmoab->extra_write_options, usrwriteopts, &writeopts));
#endif
    PetscCall(PetscInfo(dm, "Writing file %s with options: %s\n", filename, writeopts));
  } else {
    writeopts = NULL;
  }

  /* output file, using parallel write */
  merr = dmmoab->mbiface->write_file(filename, NULL, writeopts, &dmmoab->fileset, 1);
  MBERRVM(dmmoab->mbiface, "Writing output of DMMoab failed.", merr);
  PetscCall(PetscFree(writeopts));
  PetscFunctionReturn(PETSC_SUCCESS);
}