1af0996ceSBarry Smith #include <petsc/private/dmmbimpl.h> /*I "petscdmmoab.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 3032b8ab6SVijay Mahadevan 4032b8ab6SVijay Mahadevan #include <petscdmmoab.h> 5032b8ab6SVijay Mahadevan #include <MBTagConventions.hpp> 6032b8ab6SVijay Mahadevan 79c368985SVijay Mahadevan #define USE_NATIVE_PETSCVEC 89c368985SVijay Mahadevan 9f6829af0SVijay Mahadevan /* declare some private DMMoab specific overrides */ 1049abdd8aSBarry Smith static PetscErrorCode DMCreateVector_Moab_Private(DM, moab::Tag, const moab::Range *, PetscBool, PetscBool, Vec *); 11*2a8381b2SBarry Smith static PetscErrorCode DMVecCtxDestroy_Moab(PetscCtxRt); 1249abdd8aSBarry Smith static PetscErrorCode DMVecDuplicate_Moab(Vec, Vec *); 139daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 1449abdd8aSBarry Smith static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *, moab::ParallelComm *, char **); 159daf19fdSVijay Mahadevan #else 1649abdd8aSBarry Smith static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *, char **); 179daf19fdSVijay Mahadevan #endif 18032b8ab6SVijay Mahadevan 19b8ecf6d3SVijay Mahadevan /*@C 20f6829af0SVijay Mahadevan DMMoabCreateVector - Create a Vec from either an existing tag, or a specified tag size, and a range of entities 21f6829af0SVijay Mahadevan 22d083f849SBarry Smith Collective 23f6829af0SVijay Mahadevan 24d8d19677SJose E. Roman Input Parameters: 25b8ecf6d3SVijay Mahadevan + dm - The DMMoab object being set 26f6829af0SVijay Mahadevan . tag - If non-zero, block size will be taken from the tag size 27f6829af0SVijay Mahadevan . range - If non-empty, Vec corresponds to these entities, otherwise to the entities set on the DMMoab 28f6829af0SVijay Mahadevan . is_global_vec - If true, this is a local representation of the Vec (including ghosts in parallel), otherwise a truly parallel one 29a2b725a8SWilliam Gropp - destroy_tag - If true, MOAB tag is destroyed with Vec, otherwise it is left on MOAB 30f6829af0SVijay Mahadevan 31f6829af0SVijay Mahadevan Output Parameter: 32f6829af0SVijay Mahadevan . vec - The created vector 33f6829af0SVijay Mahadevan 34f6829af0SVijay Mahadevan Level: beginner 35f6829af0SVijay Mahadevan 36db781477SPatrick Sanan .seealso: `VecCreate()` 37f6829af0SVijay Mahadevan @*/ 38d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag, const moab::Range *range, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) 39d71ae5a4SJacob Faibussowitsch { 40f6829af0SVijay Mahadevan PetscFunctionBegin; 417a8be351SBarry Smith PetscCheck(tag || (range && !range->empty()), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Both tag and range cannot be null."); 42f6829af0SVijay Mahadevan 439566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, tag, range, is_global_vec, destroy_tag, vec)); 443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45f6829af0SVijay Mahadevan } 46f6829af0SVijay Mahadevan 47b8ecf6d3SVijay Mahadevan /*@C 48f6829af0SVijay Mahadevan DMMoabGetVecTag - Get the MOAB tag associated with this Vec 49f6829af0SVijay Mahadevan 50f6829af0SVijay Mahadevan Input Parameter: 51f6829af0SVijay Mahadevan . vec - Vec being queried 52f6829af0SVijay Mahadevan 53f6829af0SVijay Mahadevan Output Parameter: 54f6829af0SVijay Mahadevan . tag - Tag associated with this Vec. NULL if vec is a native PETSc Vec. 55f6829af0SVijay Mahadevan 56f6829af0SVijay Mahadevan Level: beginner 57f6829af0SVijay Mahadevan 58db781477SPatrick Sanan .seealso: `DMMoabCreateVector()`, `DMMoabGetVecRange()` 59f6829af0SVijay Mahadevan @*/ 60d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabGetVecTag(Vec vec, moab::Tag *tag) 61d71ae5a4SJacob Faibussowitsch { 62f6829af0SVijay Mahadevan PetscContainer moabdata; 63f6829af0SVijay Mahadevan Vec_MOAB *vmoab; 64f6829af0SVijay Mahadevan 65f6829af0SVijay Mahadevan PetscFunctionBegin; 664f572ea9SToby Isaac PetscAssertPointer(tag, 2); 67f6829af0SVijay Mahadevan 68f6829af0SVijay Mahadevan /* Get the MOAB private data */ 699566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 70*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &vmoab)); 71f6829af0SVijay Mahadevan 72f6829af0SVijay Mahadevan *tag = vmoab->tag; 733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74f6829af0SVijay Mahadevan } 75f6829af0SVijay Mahadevan 76b8ecf6d3SVijay Mahadevan /*@C 77f6829af0SVijay Mahadevan DMMoabGetVecRange - Get the MOAB entities associated with this Vec 78f6829af0SVijay Mahadevan 79f6829af0SVijay Mahadevan Input Parameter: 80f6829af0SVijay Mahadevan . vec - Vec being queried 81f6829af0SVijay Mahadevan 82f6829af0SVijay Mahadevan Output Parameter: 83f6829af0SVijay Mahadevan . range - Entities associated with this Vec. NULL if vec is a native PETSc Vec. 84f6829af0SVijay Mahadevan 85f6829af0SVijay Mahadevan Level: beginner 86f6829af0SVijay Mahadevan 87db781477SPatrick Sanan .seealso: `DMMoabCreateVector()`, `DMMoabGetVecTag()` 88f6829af0SVijay Mahadevan @*/ 89d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabGetVecRange(Vec vec, moab::Range *range) 90d71ae5a4SJacob Faibussowitsch { 91f6829af0SVijay Mahadevan PetscContainer moabdata; 92f6829af0SVijay Mahadevan Vec_MOAB *vmoab; 93f6829af0SVijay Mahadevan 94f6829af0SVijay Mahadevan PetscFunctionBegin; 954f572ea9SToby Isaac PetscAssertPointer(range, 2); 96f6829af0SVijay Mahadevan 97f6829af0SVijay Mahadevan /* Get the MOAB private data handle */ 989566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 99*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &vmoab)); 100f6829af0SVijay Mahadevan *range = *vmoab->tag_range; 1013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102f6829af0SVijay Mahadevan } 103f6829af0SVijay Mahadevan 104b8ecf6d3SVijay Mahadevan /*@C 105f6829af0SVijay Mahadevan DMMoabVecGetArray - Returns the writable direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities 106f6829af0SVijay Mahadevan 107d083f849SBarry Smith Collective 108f6829af0SVijay Mahadevan 109d8d19677SJose E. Roman Input Parameters: 110a2b725a8SWilliam Gropp + dm - The DMMoab object being set 111a2b725a8SWilliam Gropp - vec - The Vector whose underlying data is requested 112f6829af0SVijay Mahadevan 113f6829af0SVijay Mahadevan Output Parameter: 114f6829af0SVijay Mahadevan . array - The local data array 115f6829af0SVijay Mahadevan 116f6829af0SVijay Mahadevan Level: intermediate 117f6829af0SVijay Mahadevan 118db781477SPatrick Sanan .seealso: `DMMoabVecRestoreArray()`, `DMMoabVecGetArrayRead()`, `DMMoabVecRestoreArrayRead()` 119f6829af0SVijay Mahadevan @*/ 120d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabVecGetArray(DM dm, Vec vec, void *array) 121d71ae5a4SJacob Faibussowitsch { 122f6829af0SVijay Mahadevan DM_Moab *dmmoab; 123f6829af0SVijay Mahadevan moab::ErrorCode merr; 124f6829af0SVijay Mahadevan PetscInt count, i, f; 125f6829af0SVijay Mahadevan moab::Tag vtag; 126f6829af0SVijay Mahadevan PetscScalar **varray; 127f6829af0SVijay Mahadevan PetscScalar *marray; 128f6829af0SVijay Mahadevan PetscContainer moabdata; 129f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 130f6829af0SVijay Mahadevan 131f6829af0SVijay Mahadevan PetscFunctionBegin; 132f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 133f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 1344f572ea9SToby Isaac PetscAssertPointer(array, 3); 135f6829af0SVijay Mahadevan dmmoab = (DM_Moab *)dm->data; 136f6829af0SVijay Mahadevan 137f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 1389566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 139*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &vmoab)); 140f6829af0SVijay Mahadevan 141f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 142f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 143f6829af0SVijay Mahadevan 144f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 145f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 1469566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &vmoab->local)); 1479566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local)); 1489566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local)); 149f6829af0SVijay Mahadevan 150f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 1519566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 152*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &xmoab)); 153f6829af0SVijay Mahadevan 154f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 1559566063dSJacob Faibussowitsch PetscCall(VecGhostGetLocalForm(vmoab->local, &xmoab->local)); 1569566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 1579566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 158f6829af0SVijay Mahadevan 1599566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmoab->local, varray)); 1601baa6e33SBarry Smith } else { 161f6829af0SVijay Mahadevan /* Get the MOAB private data */ 1629566063dSJacob Faibussowitsch PetscCall(DMMoabGetVecTag(vec, &vtag)); 163f6829af0SVijay Mahadevan 1649daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 165f6829af0SVijay Mahadevan /* exchange the data into ghost cells first */ 1669371c9d4SSatish Balay merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); 1679371c9d4SSatish Balay MBERRNM(merr); 1689daf19fdSVijay Mahadevan #endif 169f6829af0SVijay Mahadevan 1709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray)); 171f6829af0SVijay Mahadevan 172f6829af0SVijay Mahadevan /* Get the array data for local entities */ 1739371c9d4SSatish Balay merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void *&>(marray), false); 1749371c9d4SSatish Balay MBERRNM(merr); 1751dca8a05SBarry Smith PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); 176f6829af0SVijay Mahadevan 177f6829af0SVijay Mahadevan i = 0; 178f6829af0SVijay Mahadevan for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { 1799371c9d4SSatish Balay for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f] = marray[i]; 1803f1c6e43SVijay Mahadevan //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; 181f6829af0SVijay Mahadevan } 182f6829af0SVijay Mahadevan } 1833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 184f6829af0SVijay Mahadevan } 185f6829af0SVijay Mahadevan 186b8ecf6d3SVijay Mahadevan /*@C 187f6829af0SVijay Mahadevan DMMoabVecRestoreArray - Restores the writable direct access array obtained via DMMoabVecGetArray 188f6829af0SVijay Mahadevan 189d083f849SBarry Smith Collective 190f6829af0SVijay Mahadevan 191d8d19677SJose E. Roman Input Parameters: 192f6829af0SVijay Mahadevan + dm - The DMMoab object being set 193f6829af0SVijay Mahadevan . vec - The Vector whose underlying data is requested 194a2b725a8SWilliam Gropp - array - The local data array 195f6829af0SVijay Mahadevan 196f6829af0SVijay Mahadevan Level: intermediate 197f6829af0SVijay Mahadevan 198db781477SPatrick Sanan .seealso: `DMMoabVecGetArray()`, `DMMoabVecGetArrayRead()`, `DMMoabVecRestoreArrayRead()` 199f6829af0SVijay Mahadevan @*/ 200d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabVecRestoreArray(DM dm, Vec vec, void *array) 201d71ae5a4SJacob Faibussowitsch { 202f6829af0SVijay Mahadevan DM_Moab *dmmoab; 203f6829af0SVijay Mahadevan moab::ErrorCode merr; 204f6829af0SVijay Mahadevan moab::Tag vtag; 205f6829af0SVijay Mahadevan PetscInt count, i, f; 206f6829af0SVijay Mahadevan PetscScalar **varray; 207f6829af0SVijay Mahadevan PetscScalar *marray; 208f6829af0SVijay Mahadevan PetscContainer moabdata; 209f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 210f6829af0SVijay Mahadevan 211f6829af0SVijay Mahadevan PetscFunctionBegin; 212f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 213f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 2144f572ea9SToby Isaac PetscAssertPointer(array, 3); 215f6829af0SVijay Mahadevan dmmoab = (DM_Moab *)dm->data; 216f6829af0SVijay Mahadevan 217f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 2189566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 219*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &vmoab)); 220f6829af0SVijay Mahadevan 221f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 222f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 223f6829af0SVijay Mahadevan 224f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 225f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 2269566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 227*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &xmoab)); 228f6829af0SVijay Mahadevan 229f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 2309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmoab->local, varray)); 2319566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateBegin(vmoab->local, ADD_VALUES, SCATTER_REVERSE)); 2329566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateEnd(vmoab->local, ADD_VALUES, SCATTER_REVERSE)); 2339566063dSJacob Faibussowitsch PetscCall(VecGhostRestoreLocalForm(vmoab->local, &xmoab->local)); 234f6829af0SVijay Mahadevan 235f6829af0SVijay Mahadevan /* restore local pieces */ 2369566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, vmoab->local, INSERT_VALUES, vec)); 2379566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, vmoab->local, INSERT_VALUES, vec)); 2389566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &vmoab->local)); 2399371c9d4SSatish Balay } else { 240f6829af0SVijay Mahadevan /* Get the MOAB private data */ 2419566063dSJacob Faibussowitsch PetscCall(DMMoabGetVecTag(vec, &vtag)); 242f6829af0SVijay Mahadevan 243f6829af0SVijay Mahadevan /* Get the array data for local entities */ 2449371c9d4SSatish Balay merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void *&>(marray), false); 2459371c9d4SSatish Balay MBERRNM(merr); 2461dca8a05SBarry Smith PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); 247f6829af0SVijay Mahadevan 248f6829af0SVijay Mahadevan i = 0; 249f6829af0SVijay Mahadevan for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { 2509371c9d4SSatish Balay for (f = 0; f < dmmoab->numFields; f++, i++) marray[i] = (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f]; 2513f1c6e43SVijay Mahadevan //marray[i] = (*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]; 252f6829af0SVijay Mahadevan } 253f6829af0SVijay Mahadevan 2549daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 255f6829af0SVijay Mahadevan /* reduce the tags correctly -> should probably let the user choose how to reduce in the future 256f6829af0SVijay Mahadevan For all FEM residual based assembly calculations, MPI_SUM should serve well */ 2579371c9d4SSatish Balay merr = dmmoab->pcomm->reduce_tags(vtag, MPI_SUM, *dmmoab->vlocal); 2589371c9d4SSatish Balay MBERRV(dmmoab->mbiface, merr); 2599daf19fdSVijay Mahadevan #endif 2609566063dSJacob Faibussowitsch PetscCall(PetscFree(*varray)); 261f6829af0SVijay Mahadevan } 2623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 263f6829af0SVijay Mahadevan } 264f6829af0SVijay Mahadevan 265b8ecf6d3SVijay Mahadevan /*@C 266f6829af0SVijay Mahadevan DMMoabVecGetArrayRead - Returns the read-only direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities 267f6829af0SVijay Mahadevan 268d083f849SBarry Smith Collective 269f6829af0SVijay Mahadevan 270d8d19677SJose E. Roman Input Parameters: 271f6829af0SVijay Mahadevan + dm - The DMMoab object being set 272a2b725a8SWilliam Gropp - vec - The Vector whose underlying data is requested 273f6829af0SVijay Mahadevan 274f6829af0SVijay Mahadevan Output Parameter: 275f6829af0SVijay Mahadevan . array - The local data array 276f6829af0SVijay Mahadevan 277f6829af0SVijay Mahadevan Level: intermediate 278f6829af0SVijay Mahadevan 279db781477SPatrick Sanan .seealso: `DMMoabVecRestoreArrayRead()`, `DMMoabVecGetArray()`, `DMMoabVecRestoreArray()` 280f6829af0SVijay Mahadevan @*/ 281d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabVecGetArrayRead(DM dm, Vec vec, void *array) 282d71ae5a4SJacob Faibussowitsch { 283f6829af0SVijay Mahadevan DM_Moab *dmmoab; 284f6829af0SVijay Mahadevan moab::ErrorCode merr; 285f6829af0SVijay Mahadevan PetscInt count, i, f; 286f6829af0SVijay Mahadevan moab::Tag vtag; 287f6829af0SVijay Mahadevan PetscScalar **varray; 288f6829af0SVijay Mahadevan PetscScalar *marray; 289f6829af0SVijay Mahadevan PetscContainer moabdata; 290f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 291f6829af0SVijay Mahadevan 292f6829af0SVijay Mahadevan PetscFunctionBegin; 293f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 294f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 2954f572ea9SToby Isaac PetscAssertPointer(array, 3); 296f6829af0SVijay Mahadevan dmmoab = (DM_Moab *)dm->data; 297f6829af0SVijay Mahadevan 298f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 2999566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 300*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &vmoab)); 301f6829af0SVijay Mahadevan 302f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 303f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 304f6829af0SVijay Mahadevan 305f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 306f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 3079566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &vmoab->local)); 3089566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local)); 3099566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local)); 310f6829af0SVijay Mahadevan 311f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3129566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 313*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &xmoab)); 314f6829af0SVijay Mahadevan 315f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 3169566063dSJacob Faibussowitsch PetscCall(VecGhostGetLocalForm(vmoab->local, &xmoab->local)); 3179566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 3189566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 3199566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmoab->local, varray)); 3209371c9d4SSatish Balay } else { 321f6829af0SVijay Mahadevan /* Get the MOAB private data */ 3229566063dSJacob Faibussowitsch PetscCall(DMMoabGetVecTag(vec, &vtag)); 323f6829af0SVijay Mahadevan 3249daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 325f6829af0SVijay Mahadevan /* exchange the data into ghost cells first */ 3269371c9d4SSatish Balay merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); 3279371c9d4SSatish Balay MBERRNM(merr); 3289daf19fdSVijay Mahadevan #endif 3299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray)); 330f6829af0SVijay Mahadevan 331f6829af0SVijay Mahadevan /* Get the array data for local entities */ 3329371c9d4SSatish Balay merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void *&>(marray), false); 3339371c9d4SSatish Balay MBERRNM(merr); 3341dca8a05SBarry Smith PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); 335f6829af0SVijay Mahadevan 336f6829af0SVijay Mahadevan i = 0; 337f6829af0SVijay Mahadevan for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { 3389371c9d4SSatish Balay for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f] = marray[i]; 3393f1c6e43SVijay Mahadevan //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; 340f6829af0SVijay Mahadevan } 341f6829af0SVijay Mahadevan } 3423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343f6829af0SVijay Mahadevan } 344f6829af0SVijay Mahadevan 345b8ecf6d3SVijay Mahadevan /*@C 3464597dd3dSJose E. Roman DMMoabVecRestoreArrayRead - Restores the read-only direct access array obtained via DMMoabVecGetArray 347f6829af0SVijay Mahadevan 348d083f849SBarry Smith Collective 349f6829af0SVijay Mahadevan 35097bb3fdcSJose E. Roman Input Parameters: 351f6829af0SVijay Mahadevan + dm - The DMMoab object being set 352f6829af0SVijay Mahadevan . vec - The Vector whose underlying data is requested 353a2b725a8SWilliam Gropp - array - The local data array 354f6829af0SVijay Mahadevan 355f6829af0SVijay Mahadevan Level: intermediate 356f6829af0SVijay Mahadevan 357db781477SPatrick Sanan .seealso: `DMMoabVecGetArrayRead()`, `DMMoabVecGetArray()`, `DMMoabVecRestoreArray()` 358f6829af0SVijay Mahadevan @*/ 359d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabVecRestoreArrayRead(DM dm, Vec vec, void *array) 360d71ae5a4SJacob Faibussowitsch { 361f6829af0SVijay Mahadevan PetscScalar **varray; 362f6829af0SVijay Mahadevan PetscContainer moabdata; 363f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 364f6829af0SVijay Mahadevan 365f6829af0SVijay Mahadevan PetscFunctionBegin; 366f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 367f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 3684f572ea9SToby Isaac PetscAssertPointer(array, 3); 369f6829af0SVijay Mahadevan 370f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3719566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 372*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &vmoab)); 373f6829af0SVijay Mahadevan 374f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 375f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 376f6829af0SVijay Mahadevan 377f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 378f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3799566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 380*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &xmoab)); 381f6829af0SVijay Mahadevan 382f6829af0SVijay Mahadevan /* restore the local representation of the arrays from Vectors */ 3839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmoab->local, varray)); 3849566063dSJacob Faibussowitsch PetscCall(VecGhostRestoreLocalForm(vmoab->local, &xmoab->local)); 385f6829af0SVijay Mahadevan 386f6829af0SVijay Mahadevan /* restore local pieces */ 3879566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &vmoab->local)); 3889371c9d4SSatish Balay } else { 389f6829af0SVijay Mahadevan /* Nothing to do but just free the memory allocated before */ 3909566063dSJacob Faibussowitsch PetscCall(PetscFree(*varray)); 391f6829af0SVijay Mahadevan } 3923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 393f6829af0SVijay Mahadevan } 394f6829af0SVijay Mahadevan 39566976f2fSJacob Faibussowitsch static PetscErrorCode DMCreateVector_Moab_Private(DM dm, moab::Tag tag, const moab::Range *userrange, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) 396d71ae5a4SJacob Faibussowitsch { 397032b8ab6SVijay Mahadevan moab::ErrorCode merr; 398032b8ab6SVijay Mahadevan PetscBool is_newtag; 399351b8a77SVijay Mahadevan const moab::Range *range; 400bb8f3634SVijay Mahadevan PetscInt count, lnative_vec, gnative_vec; 4019088682fSVijay Mahadevan std::string ttname; 402c4427235SVijay Mahadevan PetscScalar *data_ptr, *defaultvals; 403032b8ab6SVijay Mahadevan 404db66d124SVijay Mahadevan Vec_MOAB *vmoab; 405032b8ab6SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 4069daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 407032b8ab6SVijay Mahadevan moab::ParallelComm *pcomm = dmmoab->pcomm; 4089daf19fdSVijay Mahadevan #endif 409032b8ab6SVijay Mahadevan moab::Interface *mbiface = dmmoab->mbiface; 410032b8ab6SVijay Mahadevan 411032b8ab6SVijay Mahadevan PetscFunctionBegin; 41208401ef6SPierre Jolivet PetscCheck(sizeof(PetscReal) == sizeof(PetscScalar), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "MOAB tags only support Real types (Complex-type unsupported)"); 413032b8ab6SVijay Mahadevan if (!userrange) range = dmmoab->vowned; 414032b8ab6SVijay Mahadevan else range = userrange; 4157a8be351SBarry Smith PetscCheck(range, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "Input range cannot be empty or call DMSetUp first."); 416032b8ab6SVijay Mahadevan 4173ac71f70SVijay Mahadevan #ifndef USE_NATIVE_PETSCVEC 418bb8f3634SVijay Mahadevan /* If the tag data is in a single sequence, use PETSc native vector since tag_iterate isn't useful anymore */ 419bb8f3634SVijay Mahadevan lnative_vec = (range->psize() - 1); 4203ac71f70SVijay Mahadevan #else 4213ac71f70SVijay Mahadevan lnative_vec = 1; /* NOTE: Testing PETSc vector: will force to create native vector all the time */ 4226465f021SVijay Mahadevan // lnative_vec=0; /* NOTE: Testing MOAB vector: will force to create MOAB tag_iterate based vector all the time */ 423f6829af0SVijay Mahadevan #endif 4243ac71f70SVijay Mahadevan 4259daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 42657508eceSPierre Jolivet PetscCallMPI(MPIU_Allreduce(&lnative_vec, &gnative_vec, 1, MPI_INT, MPI_MAX, ((PetscObject)dm)->comm)); 4279daf19fdSVijay Mahadevan #else 4289daf19fdSVijay Mahadevan gnative_vec = lnative_vec; 4299daf19fdSVijay Mahadevan #endif 430bb8f3634SVijay Mahadevan 431bb8f3634SVijay Mahadevan /* Create the MOAB internal data object */ 4329566063dSJacob Faibussowitsch PetscCall(PetscNew(&vmoab)); 433bb8f3634SVijay Mahadevan vmoab->is_native_vec = (gnative_vec > 0 ? PETSC_TRUE : PETSC_FALSE); 434bb8f3634SVijay Mahadevan 435bb8f3634SVijay Mahadevan if (!vmoab->is_native_vec) { 4363ac71f70SVijay Mahadevan merr = moab::MB_SUCCESS; 43764e1c140SVijay Mahadevan if (tag != 0) merr = mbiface->tag_get_name(tag, ttname); 43864e1c140SVijay Mahadevan if (!ttname.length() || merr != moab::MB_SUCCESS) { 439db66d124SVijay Mahadevan /* get the new name for the anonymous MOABVec -> the tag_name will be destroyed along with Tag */ 440c528d872SBarry Smith char *tag_name = NULL; 4419daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 4429566063dSJacob Faibussowitsch PetscCall(DMVecCreateTagName_Moab_Private(mbiface, pcomm, &tag_name)); 4439daf19fdSVijay Mahadevan #else 4449566063dSJacob Faibussowitsch PetscCall(DMVecCreateTagName_Moab_Private(mbiface, &tag_name)); 4459daf19fdSVijay Mahadevan #endif 446032b8ab6SVijay Mahadevan is_newtag = PETSC_TRUE; 447032b8ab6SVijay Mahadevan 448db66d124SVijay Mahadevan /* Create the default value for the tag (all zeros) */ 4499566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dmmoab->numFields, &defaultvals)); 450032b8ab6SVijay Mahadevan 451db66d124SVijay Mahadevan /* Create the tag */ 4529371c9d4SSatish Balay merr = mbiface->tag_get_handle(tag_name, dmmoab->numFields, moab::MB_TYPE_DOUBLE, tag, moab::MB_TAG_DENSE | moab::MB_TAG_CREAT, defaultvals); 4539371c9d4SSatish Balay MBERRNM(merr); 4549566063dSJacob Faibussowitsch PetscCall(PetscFree(tag_name)); 4559566063dSJacob Faibussowitsch PetscCall(PetscFree(defaultvals)); 4569371c9d4SSatish Balay } else { 457db66d124SVijay Mahadevan /* Make sure the tag data is of type "double" */ 458032b8ab6SVijay Mahadevan moab::DataType tag_type; 4599371c9d4SSatish Balay merr = mbiface->tag_get_data_type(tag, tag_type); 4609371c9d4SSatish Balay MBERRNM(merr); 4611dca8a05SBarry Smith PetscCheck(tag_type == moab::MB_TYPE_DOUBLE, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Tag data type must be MB_TYPE_DOUBLE"); 462032b8ab6SVijay Mahadevan is_newtag = destroy_tag; 463032b8ab6SVijay Mahadevan } 464032b8ab6SVijay Mahadevan 465032b8ab6SVijay Mahadevan vmoab->tag = tag; 466bb8f3634SVijay Mahadevan vmoab->new_tag = is_newtag; 467bb8f3634SVijay Mahadevan } 468032b8ab6SVijay Mahadevan vmoab->mbiface = mbiface; 4699daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 470032b8ab6SVijay Mahadevan vmoab->pcomm = pcomm; 4719daf19fdSVijay Mahadevan #endif 472032b8ab6SVijay Mahadevan vmoab->is_global_vec = is_global_vec; 473bb8f3634SVijay Mahadevan vmoab->tag_size = dmmoab->bs; 474032b8ab6SVijay Mahadevan 475bb8f3634SVijay Mahadevan if (vmoab->is_native_vec) { 476bb8f3634SVijay Mahadevan /* Create the PETSc Vector directly and attach our functions accordingly */ 477bb8f3634SVijay Mahadevan if (!is_global_vec) { 478bb8f3634SVijay Mahadevan /* This is an MPI Vector with ghosted padding */ 47957508eceSPierre Jolivet PetscCall(VecCreateGhostBlock(((PetscObject)dm)->comm, dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], vec)); 4805f80ce2aSJacob Faibussowitsch } else { 481bb8f3634SVijay Mahadevan /* This is an MPI/SEQ Vector */ 48257508eceSPierre Jolivet PetscCall(VecCreate(((PetscObject)dm)->comm, vec)); 4839566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*vec, dmmoab->numFields * dmmoab->nloc, PETSC_DECIDE)); 4849566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(*vec, dmmoab->bs)); 4859566063dSJacob Faibussowitsch PetscCall(VecSetType(*vec, VECMPI)); 486bb8f3634SVijay Mahadevan } 4875f80ce2aSJacob Faibussowitsch } else { 488db66d124SVijay Mahadevan /* Call tag_iterate. This will cause MOAB to allocate memory for the 489db66d124SVijay Mahadevan tag data if it hasn't already happened */ 4909371c9d4SSatish Balay merr = mbiface->tag_iterate(tag, range->begin(), range->end(), count, (void *&)data_ptr); 4919371c9d4SSatish Balay MBERRNM(merr); 492032b8ab6SVijay Mahadevan 493bb8f3634SVijay Mahadevan /* set the reference for vector range */ 494bb8f3634SVijay Mahadevan vmoab->tag_range = new moab::Range(*range); 4959371c9d4SSatish Balay merr = mbiface->tag_get_length(tag, dmmoab->numFields); 4969371c9d4SSatish Balay MBERRNM(merr); 497032b8ab6SVijay Mahadevan 498db66d124SVijay Mahadevan /* Create the PETSc Vector 499db66d124SVijay Mahadevan Query MOAB mesh to check if there are any ghosted entities 500032b8ab6SVijay Mahadevan -> if we do, create a ghosted vector to map correctly to the same layout 501032b8ab6SVijay Mahadevan -> else, create a non-ghosted parallel vector */ 502bb8f3634SVijay Mahadevan if (!is_global_vec) { 503db66d124SVijay Mahadevan /* This is an MPI Vector with ghosted padding */ 50457508eceSPierre Jolivet PetscCall(VecCreateGhostBlockWithArray(((PetscObject)dm)->comm, dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], data_ptr, vec)); 5055f80ce2aSJacob Faibussowitsch } else { 506bb8f3634SVijay Mahadevan /* This is an MPI Vector without ghosted padding */ 50757508eceSPierre Jolivet PetscCall(VecCreateMPIWithArray(((PetscObject)dm)->comm, dmmoab->bs, dmmoab->numFields * range->size(), PETSC_DECIDE, data_ptr, vec)); 508032b8ab6SVijay Mahadevan } 509bb8f3634SVijay Mahadevan } 5109566063dSJacob Faibussowitsch PetscCall(VecSetFromOptions(*vec)); 511032b8ab6SVijay Mahadevan 512f6829af0SVijay Mahadevan /* create a container and store the internal MOAB data for faster access based on Entities etc */ 51349abdd8aSBarry Smith PetscCall(PetscObjectContainerCompose((PetscObject)*vec, "MOABData", vmoab, DMVecCtxDestroy_Moab)); 514f6829af0SVijay Mahadevan (*vec)->ops->duplicate = DMVecDuplicate_Moab; 515032b8ab6SVijay Mahadevan 516db66d124SVijay Mahadevan /* Vector created, manually set local to global mapping */ 51748a46eb9SPierre Jolivet if (dmmoab->ltog_map) PetscCall(VecSetLocalToGlobalMapping(*vec, dmmoab->ltog_map)); 518032b8ab6SVijay Mahadevan 519032b8ab6SVijay Mahadevan /* set the DM reference to the vector */ 5209566063dSJacob Faibussowitsch PetscCall(VecSetDM(*vec, dm)); 5213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 522032b8ab6SVijay Mahadevan } 523032b8ab6SVijay Mahadevan 524f6829af0SVijay Mahadevan /* DMVecCreateTagName_Moab_Private 525032b8ab6SVijay Mahadevan * 526032b8ab6SVijay Mahadevan * Creates a unique tag name that will be shared across processes. If 527032b8ab6SVijay Mahadevan * pcomm is NULL, then this is a serial vector. A unique tag name 528032b8ab6SVijay Mahadevan * will be returned in tag_name in either case. 529032b8ab6SVijay Mahadevan * 530032b8ab6SVijay Mahadevan * The tag names have the format _PETSC_VEC_N where N is some integer. 531032b8ab6SVijay Mahadevan * 532032b8ab6SVijay Mahadevan * NOTE: The tag_name is allocated in this routine; The user needs to free 533032b8ab6SVijay Mahadevan * the character array. 534032b8ab6SVijay Mahadevan */ 5359daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 5369daf19fdSVijay Mahadevan PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, moab::ParallelComm *pcomm, char **tag_name) 5379daf19fdSVijay Mahadevan #else 53866976f2fSJacob Faibussowitsch static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, char **tag_name) 5399daf19fdSVijay Mahadevan #endif 540032b8ab6SVijay Mahadevan { 541032b8ab6SVijay Mahadevan moab::ErrorCode mberr; 542032b8ab6SVijay Mahadevan PetscInt n, global_n; 543032b8ab6SVijay Mahadevan moab::Tag indexTag; 544032b8ab6SVijay Mahadevan 545032b8ab6SVijay Mahadevan PetscFunctionBegin; 546032b8ab6SVijay Mahadevan const char *PVEC_PREFIX = "__PETSC_VEC_"; 5479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PETSC_MAX_PATH_LEN, tag_name)); 548032b8ab6SVijay Mahadevan 549032b8ab6SVijay Mahadevan moab::EntityHandle rootset = mbiface->get_root_set(); 550032b8ab6SVijay Mahadevan 5519daf19fdSVijay Mahadevan /* Check to see if there are any PETSc vectors defined */ 552f0b74427SPierre Jolivet /* Create a tag in MOAB mesh to index and keep track of number of PETSc vec tags */ 5539371c9d4SSatish Balay mberr = mbiface->tag_get_handle("__PETSC_VECS__", 1, moab::MB_TYPE_INTEGER, indexTag, moab::MB_TAG_SPARSE | moab::MB_TAG_CREAT, 0); 5549371c9d4SSatish Balay MBERRNM(mberr); 555032b8ab6SVijay Mahadevan mberr = mbiface->tag_get_data(indexTag, &rootset, 1, &n); 556032b8ab6SVijay Mahadevan if (mberr == moab::MB_TAG_NOT_FOUND) n = 0; /* this is the first temporary vector */ 557032b8ab6SVijay Mahadevan else MBERRNM(mberr); 558032b8ab6SVijay Mahadevan 559032b8ab6SVijay Mahadevan /* increment the new value of n */ 560032b8ab6SVijay Mahadevan ++n; 561032b8ab6SVijay Mahadevan 5629daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 563efd17f3eSVijay Mahadevan /* Make sure that n is consistent across all processes */ 564462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &global_n, 1, MPI_INT, MPI_MAX, pcomm->comm())); 5659daf19fdSVijay Mahadevan #else 5669daf19fdSVijay Mahadevan global_n = n; 5679daf19fdSVijay Mahadevan #endif 568032b8ab6SVijay Mahadevan 569efd17f3eSVijay Mahadevan /* Set the new name accordingly and return */ 57063a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(*tag_name, PETSC_MAX_PATH_LEN - 1, "%s_%" PetscInt_FMT, PVEC_PREFIX, global_n)); 5719371c9d4SSatish Balay mberr = mbiface->tag_set_data(indexTag, &rootset, 1, (const void *)&global_n); 5729371c9d4SSatish Balay MBERRNM(mberr); 5733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 574032b8ab6SVijay Mahadevan } 575032b8ab6SVijay Mahadevan 576d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreateGlobalVector_Moab(DM dm, Vec *gvec) 577d71ae5a4SJacob Faibussowitsch { 578f6829af0SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 579f6829af0SVijay Mahadevan 580f6829af0SVijay Mahadevan PetscFunctionBegin; 581f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5824f572ea9SToby Isaac PetscAssertPointer(gvec, 2); 5839566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, NULL, dmmoab->vowned, PETSC_TRUE, PETSC_TRUE, gvec)); 5843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 585f6829af0SVijay Mahadevan } 586f6829af0SVijay Mahadevan 587d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreateLocalVector_Moab(DM dm, Vec *lvec) 588d71ae5a4SJacob Faibussowitsch { 589f6829af0SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 590f6829af0SVijay Mahadevan 591f6829af0SVijay Mahadevan PetscFunctionBegin; 592f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5934f572ea9SToby Isaac PetscAssertPointer(lvec, 2); 5949566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, NULL, dmmoab->vlocal, PETSC_FALSE, PETSC_TRUE, lvec)); 5953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 596f6829af0SVijay Mahadevan } 597f6829af0SVijay Mahadevan 59866976f2fSJacob Faibussowitsch static PetscErrorCode DMVecDuplicate_Moab(Vec x, Vec *y) 599d71ae5a4SJacob Faibussowitsch { 600f6829af0SVijay Mahadevan DM dm; 601f6829af0SVijay Mahadevan PetscContainer moabdata; 602f6829af0SVijay Mahadevan Vec_MOAB *vmoab; 603f6829af0SVijay Mahadevan 604f6829af0SVijay Mahadevan PetscFunctionBegin; 605f6829af0SVijay Mahadevan PetscValidHeaderSpecific(x, VEC_CLASSID, 1); 6064f572ea9SToby Isaac PetscAssertPointer(y, 2); 607f6829af0SVijay Mahadevan 608f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 6099566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)x, "MOABData", (PetscObject *)&moabdata)); 610*2a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(moabdata, &vmoab)); 611f6829af0SVijay Mahadevan 6129566063dSJacob Faibussowitsch PetscCall(VecGetDM(x, &dm)); 613f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 614f6829af0SVijay Mahadevan 6159566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, NULL, vmoab->tag_range, vmoab->is_global_vec, PETSC_TRUE, y)); 6169566063dSJacob Faibussowitsch PetscCall(VecSetDM(*y, dm)); 6173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 618f6829af0SVijay Mahadevan } 619f6829af0SVijay Mahadevan 620*2a8381b2SBarry Smith static PetscErrorCode DMVecCtxDestroy_Moab(PetscCtxRt ctx) 621d71ae5a4SJacob Faibussowitsch { 622*2a8381b2SBarry Smith Vec_MOAB *vmoab = *(Vec_MOAB **)ctx; 623032b8ab6SVijay Mahadevan moab::ErrorCode merr; 624032b8ab6SVijay Mahadevan 625032b8ab6SVijay Mahadevan PetscFunctionBegin; 626032b8ab6SVijay Mahadevan if (vmoab->new_tag && vmoab->tag) { 627efd17f3eSVijay Mahadevan /* Tag was created via a call to VecDuplicate, delete the underlying tag in MOAB */ 6289371c9d4SSatish Balay merr = vmoab->mbiface->tag_delete(vmoab->tag); 6299371c9d4SSatish Balay MBERRNM(merr); 630032b8ab6SVijay Mahadevan } 631032b8ab6SVijay Mahadevan delete vmoab->tag_range; 632c528d872SBarry Smith vmoab->tag = NULL; 633c528d872SBarry Smith vmoab->mbiface = NULL; 6349daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 635c528d872SBarry Smith vmoab->pcomm = NULL; 6369daf19fdSVijay Mahadevan #endif 6379566063dSJacob Faibussowitsch PetscCall(PetscFree(vmoab)); 6383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 639032b8ab6SVijay Mahadevan } 640032b8ab6SVijay Mahadevan 641d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMGlobalToLocalBegin_Moab(DM dm, Vec g, InsertMode mode, Vec l) 642d71ae5a4SJacob Faibussowitsch { 643db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 644db66d124SVijay Mahadevan 645db66d124SVijay Mahadevan PetscFunctionBegin; 6469566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE)); 6473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 648db66d124SVijay Mahadevan } 649db66d124SVijay Mahadevan 650d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMGlobalToLocalEnd_Moab(DM dm, Vec g, InsertMode mode, Vec l) 651d71ae5a4SJacob Faibussowitsch { 652db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 653db66d124SVijay Mahadevan 654db66d124SVijay Mahadevan PetscFunctionBegin; 6559566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE)); 6563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 657db66d124SVijay Mahadevan } 658db66d124SVijay Mahadevan 659d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMLocalToGlobalBegin_Moab(DM dm, Vec l, InsertMode mode, Vec g) 660d71ae5a4SJacob Faibussowitsch { 661db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 662db66d124SVijay Mahadevan 663db66d124SVijay Mahadevan PetscFunctionBegin; 6649566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD)); 6653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 666db66d124SVijay Mahadevan } 667db66d124SVijay Mahadevan 668d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMLocalToGlobalEnd_Moab(DM dm, Vec l, InsertMode mode, Vec g) 669d71ae5a4SJacob Faibussowitsch { 670db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 671db66d124SVijay Mahadevan 672db66d124SVijay Mahadevan PetscFunctionBegin; 6739566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD)); 6743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 675db66d124SVijay Mahadevan } 676