1af0996ceSBarry Smith #include <petsc/private/dmmbimpl.h> /*I "petscdmmoab.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 3032b8ab6SVijay Mahadevan 4032b8ab6SVijay Mahadevan #include <petscdmmoab.h> 5032b8ab6SVijay Mahadevan #include <MBTagConventions.hpp> 6032b8ab6SVijay Mahadevan 79c368985SVijay Mahadevan #define USE_NATIVE_PETSCVEC 89c368985SVijay Mahadevan 9f6829af0SVijay Mahadevan /* declare some private DMMoab specific overrides */ 10f6829af0SVijay Mahadevan static PetscErrorCode DMCreateVector_Moab_Private(DM dm, moab::Tag tag, const moab::Range *userrange, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec); 11f6829af0SVijay Mahadevan static PetscErrorCode DMVecUserDestroy_Moab(void *user); 12f6829af0SVijay Mahadevan static PetscErrorCode DMVecDuplicate_Moab(Vec x, Vec *y); 139daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 149daf19fdSVijay Mahadevan static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, moab::ParallelComm *pcomm, char **tag_name); 159daf19fdSVijay Mahadevan #else 169daf19fdSVijay Mahadevan static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, char **tag_name); 179daf19fdSVijay Mahadevan #endif 18032b8ab6SVijay Mahadevan 19b8ecf6d3SVijay Mahadevan /*@C 20f6829af0SVijay Mahadevan DMMoabCreateVector - Create a Vec from either an existing tag, or a specified tag size, and a range of entities 21f6829af0SVijay Mahadevan 22d083f849SBarry Smith Collective 23f6829af0SVijay Mahadevan 24d8d19677SJose E. Roman Input Parameters: 25b8ecf6d3SVijay Mahadevan + dm - The DMMoab object being set 26f6829af0SVijay Mahadevan . tag - If non-zero, block size will be taken from the tag size 27f6829af0SVijay Mahadevan . range - If non-empty, Vec corresponds to these entities, otherwise to the entities set on the DMMoab 28f6829af0SVijay Mahadevan . is_global_vec - If true, this is a local representation of the Vec (including ghosts in parallel), otherwise a truly parallel one 29a2b725a8SWilliam Gropp - destroy_tag - If true, MOAB tag is destroyed with Vec, otherwise it is left on MOAB 30f6829af0SVijay Mahadevan 31f6829af0SVijay Mahadevan Output Parameter: 32f6829af0SVijay Mahadevan . vec - The created vector 33f6829af0SVijay Mahadevan 34f6829af0SVijay Mahadevan Level: beginner 35f6829af0SVijay Mahadevan 36db781477SPatrick Sanan .seealso: `VecCreate()` 37f6829af0SVijay Mahadevan @*/ 389371c9d4SSatish Balay PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag, const moab::Range *range, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) { 39f6829af0SVijay Mahadevan PetscFunctionBegin; 407a8be351SBarry Smith PetscCheck(tag || (range && !range->empty()), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Both tag and range cannot be null."); 41f6829af0SVijay Mahadevan 429566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, tag, range, is_global_vec, destroy_tag, vec)); 43f6829af0SVijay Mahadevan PetscFunctionReturn(0); 44f6829af0SVijay Mahadevan } 45f6829af0SVijay Mahadevan 46b8ecf6d3SVijay Mahadevan /*@C 47f6829af0SVijay Mahadevan DMMoabGetVecTag - Get the MOAB tag associated with this Vec 48f6829af0SVijay Mahadevan 49f6829af0SVijay Mahadevan Input Parameter: 50f6829af0SVijay Mahadevan . vec - Vec being queried 51f6829af0SVijay Mahadevan 52f6829af0SVijay Mahadevan Output Parameter: 53f6829af0SVijay Mahadevan . tag - Tag associated with this Vec. NULL if vec is a native PETSc Vec. 54f6829af0SVijay Mahadevan 55f6829af0SVijay Mahadevan Level: beginner 56f6829af0SVijay Mahadevan 57db781477SPatrick Sanan .seealso: `DMMoabCreateVector()`, `DMMoabGetVecRange()` 58f6829af0SVijay Mahadevan @*/ 599371c9d4SSatish Balay PetscErrorCode DMMoabGetVecTag(Vec vec, moab::Tag *tag) { 60f6829af0SVijay Mahadevan PetscContainer moabdata; 61f6829af0SVijay Mahadevan Vec_MOAB *vmoab; 62f6829af0SVijay Mahadevan 63f6829af0SVijay Mahadevan PetscFunctionBegin; 64f6829af0SVijay Mahadevan PetscValidPointer(tag, 2); 65f6829af0SVijay Mahadevan 66f6829af0SVijay Mahadevan /* Get the MOAB private data */ 679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 689566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 69f6829af0SVijay Mahadevan 70f6829af0SVijay Mahadevan *tag = vmoab->tag; 71f6829af0SVijay Mahadevan PetscFunctionReturn(0); 72f6829af0SVijay Mahadevan } 73f6829af0SVijay Mahadevan 74b8ecf6d3SVijay Mahadevan /*@C 75f6829af0SVijay Mahadevan DMMoabGetVecRange - Get the MOAB entities associated with this Vec 76f6829af0SVijay Mahadevan 77f6829af0SVijay Mahadevan Input Parameter: 78f6829af0SVijay Mahadevan . vec - Vec being queried 79f6829af0SVijay Mahadevan 80f6829af0SVijay Mahadevan Output Parameter: 81f6829af0SVijay Mahadevan . range - Entities associated with this Vec. NULL if vec is a native PETSc Vec. 82f6829af0SVijay Mahadevan 83f6829af0SVijay Mahadevan Level: beginner 84f6829af0SVijay Mahadevan 85db781477SPatrick Sanan .seealso: `DMMoabCreateVector()`, `DMMoabGetVecTag()` 86f6829af0SVijay Mahadevan @*/ 879371c9d4SSatish Balay PetscErrorCode DMMoabGetVecRange(Vec vec, moab::Range *range) { 88f6829af0SVijay Mahadevan PetscContainer moabdata; 89f6829af0SVijay Mahadevan Vec_MOAB *vmoab; 90f6829af0SVijay Mahadevan 91f6829af0SVijay Mahadevan PetscFunctionBegin; 92f6829af0SVijay Mahadevan PetscValidPointer(range, 2); 93f6829af0SVijay Mahadevan 94f6829af0SVijay Mahadevan /* Get the MOAB private data handle */ 959566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 969566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 97f6829af0SVijay Mahadevan 98f6829af0SVijay Mahadevan *range = *vmoab->tag_range; 99f6829af0SVijay Mahadevan PetscFunctionReturn(0); 100f6829af0SVijay Mahadevan } 101f6829af0SVijay Mahadevan 102b8ecf6d3SVijay Mahadevan /*@C 103f6829af0SVijay Mahadevan DMMoabVecGetArray - Returns the writable direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities 104f6829af0SVijay Mahadevan 105d083f849SBarry Smith Collective 106f6829af0SVijay Mahadevan 107d8d19677SJose E. Roman Input Parameters: 108a2b725a8SWilliam Gropp + dm - The DMMoab object being set 109a2b725a8SWilliam Gropp - vec - The Vector whose underlying data is requested 110f6829af0SVijay Mahadevan 111f6829af0SVijay Mahadevan Output Parameter: 112f6829af0SVijay Mahadevan . array - The local data array 113f6829af0SVijay Mahadevan 114f6829af0SVijay Mahadevan Level: intermediate 115f6829af0SVijay Mahadevan 116db781477SPatrick Sanan .seealso: `DMMoabVecRestoreArray()`, `DMMoabVecGetArrayRead()`, `DMMoabVecRestoreArrayRead()` 117f6829af0SVijay Mahadevan @*/ 1189371c9d4SSatish Balay PetscErrorCode DMMoabVecGetArray(DM dm, Vec vec, void *array) { 119f6829af0SVijay Mahadevan DM_Moab *dmmoab; 120f6829af0SVijay Mahadevan moab::ErrorCode merr; 121f6829af0SVijay Mahadevan PetscInt count, i, f; 122f6829af0SVijay Mahadevan moab::Tag vtag; 123f6829af0SVijay Mahadevan PetscScalar **varray; 124f6829af0SVijay Mahadevan PetscScalar *marray; 125f6829af0SVijay Mahadevan PetscContainer moabdata; 126f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 127f6829af0SVijay Mahadevan 128f6829af0SVijay Mahadevan PetscFunctionBegin; 129f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 130f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 131f6829af0SVijay Mahadevan PetscValidPointer(array, 3); 132f6829af0SVijay Mahadevan dmmoab = (DM_Moab *)dm->data; 133f6829af0SVijay Mahadevan 134f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 1359566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 1369566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 137f6829af0SVijay Mahadevan 138f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 139f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 140f6829af0SVijay Mahadevan 141f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 142f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 1439566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &vmoab->local)); 1449566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local)); 1459566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local)); 146f6829af0SVijay Mahadevan 147f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 1489566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 1499566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); 150f6829af0SVijay Mahadevan 151f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 1529566063dSJacob Faibussowitsch PetscCall(VecGhostGetLocalForm(vmoab->local, &xmoab->local)); 1539566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 1549566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 155f6829af0SVijay Mahadevan 1569566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmoab->local, varray)); 1571baa6e33SBarry Smith } else { 158f6829af0SVijay Mahadevan /* Get the MOAB private data */ 1599566063dSJacob Faibussowitsch PetscCall(DMMoabGetVecTag(vec, &vtag)); 160f6829af0SVijay Mahadevan 1619daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 162f6829af0SVijay Mahadevan /* exchange the data into ghost cells first */ 1639371c9d4SSatish Balay merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); 1649371c9d4SSatish Balay MBERRNM(merr); 1659daf19fdSVijay Mahadevan #endif 166f6829af0SVijay Mahadevan 1679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray)); 168f6829af0SVijay Mahadevan 169f6829af0SVijay Mahadevan /* Get the array data for local entities */ 1709371c9d4SSatish Balay merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void *&>(marray), false); 1719371c9d4SSatish Balay MBERRNM(merr); 1721dca8a05SBarry Smith PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); 173f6829af0SVijay Mahadevan 174f6829af0SVijay Mahadevan i = 0; 175f6829af0SVijay Mahadevan for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { 1769371c9d4SSatish Balay for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f] = marray[i]; 1773f1c6e43SVijay Mahadevan //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; 178f6829af0SVijay Mahadevan } 179f6829af0SVijay Mahadevan } 180f6829af0SVijay Mahadevan PetscFunctionReturn(0); 181f6829af0SVijay Mahadevan } 182f6829af0SVijay Mahadevan 183b8ecf6d3SVijay Mahadevan /*@C 184f6829af0SVijay Mahadevan DMMoabVecRestoreArray - Restores the writable direct access array obtained via DMMoabVecGetArray 185f6829af0SVijay Mahadevan 186d083f849SBarry Smith Collective 187f6829af0SVijay Mahadevan 188d8d19677SJose E. Roman Input Parameters: 189f6829af0SVijay Mahadevan + dm - The DMMoab object being set 190f6829af0SVijay Mahadevan . vec - The Vector whose underlying data is requested 191a2b725a8SWilliam Gropp - array - The local data array 192f6829af0SVijay Mahadevan 193f6829af0SVijay Mahadevan Level: intermediate 194f6829af0SVijay Mahadevan 195db781477SPatrick Sanan .seealso: `DMMoabVecGetArray()`, `DMMoabVecGetArrayRead()`, `DMMoabVecRestoreArrayRead()` 196f6829af0SVijay Mahadevan @*/ 1979371c9d4SSatish Balay PetscErrorCode DMMoabVecRestoreArray(DM dm, Vec vec, void *array) { 198f6829af0SVijay Mahadevan DM_Moab *dmmoab; 199f6829af0SVijay Mahadevan moab::ErrorCode merr; 200f6829af0SVijay Mahadevan moab::Tag vtag; 201f6829af0SVijay Mahadevan PetscInt count, i, f; 202f6829af0SVijay Mahadevan PetscScalar **varray; 203f6829af0SVijay Mahadevan PetscScalar *marray; 204f6829af0SVijay Mahadevan PetscContainer moabdata; 205f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 206f6829af0SVijay Mahadevan 207f6829af0SVijay Mahadevan PetscFunctionBegin; 208f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 209f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 210f6829af0SVijay Mahadevan PetscValidPointer(array, 3); 211f6829af0SVijay Mahadevan dmmoab = (DM_Moab *)dm->data; 212f6829af0SVijay Mahadevan 213f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 2149566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 2159566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 216f6829af0SVijay Mahadevan 217f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 218f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 219f6829af0SVijay Mahadevan 220f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 221f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 2229566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 2239566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); 224f6829af0SVijay Mahadevan 225f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 2269566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmoab->local, varray)); 2279566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateBegin(vmoab->local, ADD_VALUES, SCATTER_REVERSE)); 2289566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateEnd(vmoab->local, ADD_VALUES, SCATTER_REVERSE)); 2299566063dSJacob Faibussowitsch PetscCall(VecGhostRestoreLocalForm(vmoab->local, &xmoab->local)); 230f6829af0SVijay Mahadevan 231f6829af0SVijay Mahadevan /* restore local pieces */ 2329566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, vmoab->local, INSERT_VALUES, vec)); 2339566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, vmoab->local, INSERT_VALUES, vec)); 2349566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &vmoab->local)); 2359371c9d4SSatish Balay } else { 236f6829af0SVijay Mahadevan /* Get the MOAB private data */ 2379566063dSJacob Faibussowitsch PetscCall(DMMoabGetVecTag(vec, &vtag)); 238f6829af0SVijay Mahadevan 239f6829af0SVijay Mahadevan /* Get the array data for local entities */ 2409371c9d4SSatish Balay merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void *&>(marray), false); 2419371c9d4SSatish Balay MBERRNM(merr); 2421dca8a05SBarry Smith PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); 243f6829af0SVijay Mahadevan 244f6829af0SVijay Mahadevan i = 0; 245f6829af0SVijay Mahadevan for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { 2469371c9d4SSatish Balay for (f = 0; f < dmmoab->numFields; f++, i++) marray[i] = (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f]; 2473f1c6e43SVijay Mahadevan //marray[i] = (*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]; 248f6829af0SVijay Mahadevan } 249f6829af0SVijay Mahadevan 2509daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 251f6829af0SVijay Mahadevan /* reduce the tags correctly -> should probably let the user choose how to reduce in the future 252f6829af0SVijay Mahadevan For all FEM residual based assembly calculations, MPI_SUM should serve well */ 2539371c9d4SSatish Balay merr = dmmoab->pcomm->reduce_tags(vtag, MPI_SUM, *dmmoab->vlocal); 2549371c9d4SSatish Balay MBERRV(dmmoab->mbiface, merr); 2559daf19fdSVijay Mahadevan #endif 2569566063dSJacob Faibussowitsch PetscCall(PetscFree(*varray)); 257f6829af0SVijay Mahadevan } 258f6829af0SVijay Mahadevan PetscFunctionReturn(0); 259f6829af0SVijay Mahadevan } 260f6829af0SVijay Mahadevan 261b8ecf6d3SVijay Mahadevan /*@C 262f6829af0SVijay Mahadevan DMMoabVecGetArrayRead - Returns the read-only direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities 263f6829af0SVijay Mahadevan 264d083f849SBarry Smith Collective 265f6829af0SVijay Mahadevan 266d8d19677SJose E. Roman Input Parameters: 267f6829af0SVijay Mahadevan + dm - The DMMoab object being set 268a2b725a8SWilliam Gropp - vec - The Vector whose underlying data is requested 269f6829af0SVijay Mahadevan 270f6829af0SVijay Mahadevan Output Parameter: 271f6829af0SVijay Mahadevan . array - The local data array 272f6829af0SVijay Mahadevan 273f6829af0SVijay Mahadevan Level: intermediate 274f6829af0SVijay Mahadevan 275db781477SPatrick Sanan .seealso: `DMMoabVecRestoreArrayRead()`, `DMMoabVecGetArray()`, `DMMoabVecRestoreArray()` 276f6829af0SVijay Mahadevan @*/ 2779371c9d4SSatish Balay PetscErrorCode DMMoabVecGetArrayRead(DM dm, Vec vec, void *array) { 278f6829af0SVijay Mahadevan DM_Moab *dmmoab; 279f6829af0SVijay Mahadevan moab::ErrorCode merr; 280f6829af0SVijay Mahadevan PetscInt count, i, f; 281f6829af0SVijay Mahadevan moab::Tag vtag; 282f6829af0SVijay Mahadevan PetscScalar **varray; 283f6829af0SVijay Mahadevan PetscScalar *marray; 284f6829af0SVijay Mahadevan PetscContainer moabdata; 285f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 286f6829af0SVijay Mahadevan 287f6829af0SVijay Mahadevan PetscFunctionBegin; 288f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 289f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 290f6829af0SVijay Mahadevan PetscValidPointer(array, 3); 291f6829af0SVijay Mahadevan dmmoab = (DM_Moab *)dm->data; 292f6829af0SVijay Mahadevan 293f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 2949566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 2959566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 296f6829af0SVijay Mahadevan 297f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 298f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 299f6829af0SVijay Mahadevan 300f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 301f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 3029566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &vmoab->local)); 3039566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local)); 3049566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local)); 305f6829af0SVijay Mahadevan 306f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3079566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 3089566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); 309f6829af0SVijay Mahadevan 310f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 3119566063dSJacob Faibussowitsch PetscCall(VecGhostGetLocalForm(vmoab->local, &xmoab->local)); 3129566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 3139566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 3149566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmoab->local, varray)); 3159371c9d4SSatish Balay } else { 316f6829af0SVijay Mahadevan /* Get the MOAB private data */ 3179566063dSJacob Faibussowitsch PetscCall(DMMoabGetVecTag(vec, &vtag)); 318f6829af0SVijay Mahadevan 3199daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 320f6829af0SVijay Mahadevan /* exchange the data into ghost cells first */ 3219371c9d4SSatish Balay merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); 3229371c9d4SSatish Balay MBERRNM(merr); 3239daf19fdSVijay Mahadevan #endif 3249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray)); 325f6829af0SVijay Mahadevan 326f6829af0SVijay Mahadevan /* Get the array data for local entities */ 3279371c9d4SSatish Balay merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void *&>(marray), false); 3289371c9d4SSatish Balay MBERRNM(merr); 3291dca8a05SBarry Smith PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); 330f6829af0SVijay Mahadevan 331f6829af0SVijay Mahadevan i = 0; 332f6829af0SVijay Mahadevan for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { 3339371c9d4SSatish Balay for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f] = marray[i]; 3343f1c6e43SVijay Mahadevan //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; 335f6829af0SVijay Mahadevan } 336f6829af0SVijay Mahadevan } 337f6829af0SVijay Mahadevan PetscFunctionReturn(0); 338f6829af0SVijay Mahadevan } 339f6829af0SVijay Mahadevan 340b8ecf6d3SVijay Mahadevan /*@C 3414597dd3dSJose E. Roman DMMoabVecRestoreArrayRead - Restores the read-only direct access array obtained via DMMoabVecGetArray 342f6829af0SVijay Mahadevan 343d083f849SBarry Smith Collective 344f6829af0SVijay Mahadevan 34597bb3fdcSJose E. Roman Input Parameters: 346f6829af0SVijay Mahadevan + dm - The DMMoab object being set 347f6829af0SVijay Mahadevan . vec - The Vector whose underlying data is requested 348a2b725a8SWilliam Gropp - array - The local data array 349f6829af0SVijay Mahadevan 350f6829af0SVijay Mahadevan Level: intermediate 351f6829af0SVijay Mahadevan 352db781477SPatrick Sanan .seealso: `DMMoabVecGetArrayRead()`, `DMMoabVecGetArray()`, `DMMoabVecRestoreArray()` 353f6829af0SVijay Mahadevan @*/ 3549371c9d4SSatish Balay PetscErrorCode DMMoabVecRestoreArrayRead(DM dm, Vec vec, void *array) { 355f6829af0SVijay Mahadevan PetscScalar **varray; 356f6829af0SVijay Mahadevan PetscContainer moabdata; 357f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 358f6829af0SVijay Mahadevan 359f6829af0SVijay Mahadevan PetscFunctionBegin; 360f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 361f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 362f6829af0SVijay Mahadevan PetscValidPointer(array, 3); 363f6829af0SVijay Mahadevan 364f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3659566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 3669566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 367f6829af0SVijay Mahadevan 368f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 369f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 370f6829af0SVijay Mahadevan 371f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 372f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 3749566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); 375f6829af0SVijay Mahadevan 376f6829af0SVijay Mahadevan /* restore the local representation of the arrays from Vectors */ 3779566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmoab->local, varray)); 3789566063dSJacob Faibussowitsch PetscCall(VecGhostRestoreLocalForm(vmoab->local, &xmoab->local)); 379f6829af0SVijay Mahadevan 380f6829af0SVijay Mahadevan /* restore local pieces */ 3819566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &vmoab->local)); 3829371c9d4SSatish Balay } else { 383f6829af0SVijay Mahadevan /* Nothing to do but just free the memory allocated before */ 3849566063dSJacob Faibussowitsch PetscCall(PetscFree(*varray)); 385f6829af0SVijay Mahadevan } 386f6829af0SVijay Mahadevan PetscFunctionReturn(0); 387f6829af0SVijay Mahadevan } 388f6829af0SVijay Mahadevan 3899371c9d4SSatish Balay PetscErrorCode DMCreateVector_Moab_Private(DM dm, moab::Tag tag, const moab::Range *userrange, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) { 390032b8ab6SVijay Mahadevan moab::ErrorCode merr; 391032b8ab6SVijay Mahadevan PetscBool is_newtag; 392351b8a77SVijay Mahadevan const moab::Range *range; 393bb8f3634SVijay Mahadevan PetscInt count, lnative_vec, gnative_vec; 3949088682fSVijay Mahadevan std::string ttname; 395c4427235SVijay Mahadevan PetscScalar *data_ptr, *defaultvals; 396032b8ab6SVijay Mahadevan 397db66d124SVijay Mahadevan Vec_MOAB *vmoab; 398032b8ab6SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 3999daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 400032b8ab6SVijay Mahadevan moab::ParallelComm *pcomm = dmmoab->pcomm; 4019daf19fdSVijay Mahadevan #endif 402032b8ab6SVijay Mahadevan moab::Interface *mbiface = dmmoab->mbiface; 403032b8ab6SVijay Mahadevan 404032b8ab6SVijay Mahadevan PetscFunctionBegin; 40508401ef6SPierre Jolivet PetscCheck(sizeof(PetscReal) == sizeof(PetscScalar), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "MOAB tags only support Real types (Complex-type unsupported)"); 406032b8ab6SVijay Mahadevan if (!userrange) range = dmmoab->vowned; 407032b8ab6SVijay Mahadevan else range = userrange; 4087a8be351SBarry Smith PetscCheck(range, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "Input range cannot be empty or call DMSetUp first."); 409032b8ab6SVijay Mahadevan 4103ac71f70SVijay Mahadevan #ifndef USE_NATIVE_PETSCVEC 411bb8f3634SVijay Mahadevan /* If the tag data is in a single sequence, use PETSc native vector since tag_iterate isn't useful anymore */ 412bb8f3634SVijay Mahadevan lnative_vec = (range->psize() - 1); 4133ac71f70SVijay Mahadevan #else 4143ac71f70SVijay Mahadevan lnative_vec = 1; /* NOTE: Testing PETSc vector: will force to create native vector all the time */ 4156465f021SVijay Mahadevan // lnative_vec=0; /* NOTE: Testing MOAB vector: will force to create MOAB tag_iterate based vector all the time */ 416f6829af0SVijay Mahadevan #endif 4173ac71f70SVijay Mahadevan 4189daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 4191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lnative_vec, &gnative_vec, 1, MPI_INT, MPI_MAX, (((PetscObject)dm)->comm))); 4209daf19fdSVijay Mahadevan #else 4219daf19fdSVijay Mahadevan gnative_vec = lnative_vec; 4229daf19fdSVijay Mahadevan #endif 423bb8f3634SVijay Mahadevan 424bb8f3634SVijay Mahadevan /* Create the MOAB internal data object */ 4259566063dSJacob Faibussowitsch PetscCall(PetscNew(&vmoab)); 426bb8f3634SVijay Mahadevan vmoab->is_native_vec = (gnative_vec > 0 ? PETSC_TRUE : PETSC_FALSE); 427bb8f3634SVijay Mahadevan 428bb8f3634SVijay Mahadevan if (!vmoab->is_native_vec) { 4293ac71f70SVijay Mahadevan merr = moab::MB_SUCCESS; 43064e1c140SVijay Mahadevan if (tag != 0) merr = mbiface->tag_get_name(tag, ttname); 43164e1c140SVijay Mahadevan if (!ttname.length() || merr != moab::MB_SUCCESS) { 432db66d124SVijay Mahadevan /* get the new name for the anonymous MOABVec -> the tag_name will be destroyed along with Tag */ 433c528d872SBarry Smith char *tag_name = NULL; 4349daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 4359566063dSJacob Faibussowitsch PetscCall(DMVecCreateTagName_Moab_Private(mbiface, pcomm, &tag_name)); 4369daf19fdSVijay Mahadevan #else 4379566063dSJacob Faibussowitsch PetscCall(DMVecCreateTagName_Moab_Private(mbiface, &tag_name)); 4389daf19fdSVijay Mahadevan #endif 439032b8ab6SVijay Mahadevan is_newtag = PETSC_TRUE; 440032b8ab6SVijay Mahadevan 441db66d124SVijay Mahadevan /* Create the default value for the tag (all zeros) */ 4429566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dmmoab->numFields, &defaultvals)); 443032b8ab6SVijay Mahadevan 444db66d124SVijay Mahadevan /* Create the tag */ 4459371c9d4SSatish Balay merr = mbiface->tag_get_handle(tag_name, dmmoab->numFields, moab::MB_TYPE_DOUBLE, tag, moab::MB_TAG_DENSE | moab::MB_TAG_CREAT, defaultvals); 4469371c9d4SSatish Balay MBERRNM(merr); 4479566063dSJacob Faibussowitsch PetscCall(PetscFree(tag_name)); 4489566063dSJacob Faibussowitsch PetscCall(PetscFree(defaultvals)); 4499371c9d4SSatish Balay } else { 450db66d124SVijay Mahadevan /* Make sure the tag data is of type "double" */ 451032b8ab6SVijay Mahadevan moab::DataType tag_type; 4529371c9d4SSatish Balay merr = mbiface->tag_get_data_type(tag, tag_type); 4539371c9d4SSatish Balay MBERRNM(merr); 4541dca8a05SBarry Smith PetscCheck(tag_type == moab::MB_TYPE_DOUBLE, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Tag data type must be MB_TYPE_DOUBLE"); 455032b8ab6SVijay Mahadevan is_newtag = destroy_tag; 456032b8ab6SVijay Mahadevan } 457032b8ab6SVijay Mahadevan 458032b8ab6SVijay Mahadevan vmoab->tag = tag; 459bb8f3634SVijay Mahadevan vmoab->new_tag = is_newtag; 460bb8f3634SVijay Mahadevan } 461032b8ab6SVijay Mahadevan vmoab->mbiface = mbiface; 4629daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 463032b8ab6SVijay Mahadevan vmoab->pcomm = pcomm; 4649daf19fdSVijay Mahadevan #endif 465032b8ab6SVijay Mahadevan vmoab->is_global_vec = is_global_vec; 466bb8f3634SVijay Mahadevan vmoab->tag_size = dmmoab->bs; 467032b8ab6SVijay Mahadevan 468bb8f3634SVijay Mahadevan if (vmoab->is_native_vec) { 469bb8f3634SVijay Mahadevan /* Create the PETSc Vector directly and attach our functions accordingly */ 470bb8f3634SVijay Mahadevan if (!is_global_vec) { 471bb8f3634SVijay Mahadevan /* This is an MPI Vector with ghosted padding */ 4729566063dSJacob Faibussowitsch PetscCall(VecCreateGhostBlock((((PetscObject)dm)->comm), dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], vec)); 4735f80ce2aSJacob Faibussowitsch } else { 474bb8f3634SVijay Mahadevan /* This is an MPI/SEQ Vector */ 4759566063dSJacob Faibussowitsch PetscCall(VecCreate((((PetscObject)dm)->comm), vec)); 4769566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*vec, dmmoab->numFields * dmmoab->nloc, PETSC_DECIDE)); 4779566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(*vec, dmmoab->bs)); 4789566063dSJacob Faibussowitsch PetscCall(VecSetType(*vec, VECMPI)); 479bb8f3634SVijay Mahadevan } 4805f80ce2aSJacob Faibussowitsch } else { 481db66d124SVijay Mahadevan /* Call tag_iterate. This will cause MOAB to allocate memory for the 482db66d124SVijay Mahadevan tag data if it hasn't already happened */ 4839371c9d4SSatish Balay merr = mbiface->tag_iterate(tag, range->begin(), range->end(), count, (void *&)data_ptr); 4849371c9d4SSatish Balay MBERRNM(merr); 485032b8ab6SVijay Mahadevan 486bb8f3634SVijay Mahadevan /* set the reference for vector range */ 487bb8f3634SVijay Mahadevan vmoab->tag_range = new moab::Range(*range); 4889371c9d4SSatish Balay merr = mbiface->tag_get_length(tag, dmmoab->numFields); 4899371c9d4SSatish Balay MBERRNM(merr); 490032b8ab6SVijay Mahadevan 491db66d124SVijay Mahadevan /* Create the PETSc Vector 492db66d124SVijay Mahadevan Query MOAB mesh to check if there are any ghosted entities 493032b8ab6SVijay Mahadevan -> if we do, create a ghosted vector to map correctly to the same layout 494032b8ab6SVijay Mahadevan -> else, create a non-ghosted parallel vector */ 495bb8f3634SVijay Mahadevan if (!is_global_vec) { 496db66d124SVijay Mahadevan /* This is an MPI Vector with ghosted padding */ 4979566063dSJacob Faibussowitsch PetscCall(VecCreateGhostBlockWithArray((((PetscObject)dm)->comm), dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], data_ptr, vec)); 4985f80ce2aSJacob Faibussowitsch } else { 499bb8f3634SVijay Mahadevan /* This is an MPI Vector without ghosted padding */ 5009566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray((((PetscObject)dm)->comm), dmmoab->bs, dmmoab->numFields * range->size(), PETSC_DECIDE, data_ptr, vec)); 501032b8ab6SVijay Mahadevan } 502bb8f3634SVijay Mahadevan } 5039566063dSJacob Faibussowitsch PetscCall(VecSetFromOptions(*vec)); 504032b8ab6SVijay Mahadevan 505f6829af0SVijay Mahadevan /* create a container and store the internal MOAB data for faster access based on Entities etc */ 506032b8ab6SVijay Mahadevan PetscContainer moabdata; 5079566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_WORLD, &moabdata)); 5089566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(moabdata, vmoab)); 5099566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(moabdata, DMVecUserDestroy_Moab)); 5109566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*vec, "MOABData", (PetscObject)moabdata)); 511f6829af0SVijay Mahadevan (*vec)->ops->duplicate = DMVecDuplicate_Moab; 5129566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&moabdata)); 513032b8ab6SVijay Mahadevan 514db66d124SVijay Mahadevan /* Vector created, manually set local to global mapping */ 515*48a46eb9SPierre Jolivet if (dmmoab->ltog_map) PetscCall(VecSetLocalToGlobalMapping(*vec, dmmoab->ltog_map)); 516032b8ab6SVijay Mahadevan 517032b8ab6SVijay Mahadevan /* set the DM reference to the vector */ 5189566063dSJacob Faibussowitsch PetscCall(VecSetDM(*vec, dm)); 519032b8ab6SVijay Mahadevan PetscFunctionReturn(0); 520032b8ab6SVijay Mahadevan } 521032b8ab6SVijay Mahadevan 522f6829af0SVijay Mahadevan /* DMVecCreateTagName_Moab_Private 523032b8ab6SVijay Mahadevan * 524032b8ab6SVijay Mahadevan * Creates a unique tag name that will be shared across processes. If 525032b8ab6SVijay Mahadevan * pcomm is NULL, then this is a serial vector. A unique tag name 526032b8ab6SVijay Mahadevan * will be returned in tag_name in either case. 527032b8ab6SVijay Mahadevan * 528032b8ab6SVijay Mahadevan * The tag names have the format _PETSC_VEC_N where N is some integer. 529032b8ab6SVijay Mahadevan * 530032b8ab6SVijay Mahadevan * NOTE: The tag_name is allocated in this routine; The user needs to free 531032b8ab6SVijay Mahadevan * the character array. 532032b8ab6SVijay Mahadevan */ 5339daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 5349daf19fdSVijay Mahadevan PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, moab::ParallelComm *pcomm, char **tag_name) 5359daf19fdSVijay Mahadevan #else 5369daf19fdSVijay Mahadevan PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, char **tag_name) 5379daf19fdSVijay Mahadevan #endif 538032b8ab6SVijay Mahadevan { 539032b8ab6SVijay Mahadevan moab::ErrorCode mberr; 540032b8ab6SVijay Mahadevan PetscInt n, global_n; 541032b8ab6SVijay Mahadevan moab::Tag indexTag; 542032b8ab6SVijay Mahadevan 543032b8ab6SVijay Mahadevan PetscFunctionBegin; 544032b8ab6SVijay Mahadevan const char *PVEC_PREFIX = "__PETSC_VEC_"; 5459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PETSC_MAX_PATH_LEN, tag_name)); 546032b8ab6SVijay Mahadevan 547032b8ab6SVijay Mahadevan moab::EntityHandle rootset = mbiface->get_root_set(); 548032b8ab6SVijay Mahadevan 5499daf19fdSVijay Mahadevan /* Check to see if there are any PETSc vectors defined */ 550efd17f3eSVijay Mahadevan /* Create a tag in MOAB mesh to index and keep track of number of Petsc vec tags */ 5519371c9d4SSatish Balay mberr = mbiface->tag_get_handle("__PETSC_VECS__", 1, moab::MB_TYPE_INTEGER, indexTag, moab::MB_TAG_SPARSE | moab::MB_TAG_CREAT, 0); 5529371c9d4SSatish Balay MBERRNM(mberr); 553032b8ab6SVijay Mahadevan mberr = mbiface->tag_get_data(indexTag, &rootset, 1, &n); 554032b8ab6SVijay Mahadevan if (mberr == moab::MB_TAG_NOT_FOUND) n = 0; /* this is the first temporary vector */ 555032b8ab6SVijay Mahadevan else MBERRNM(mberr); 556032b8ab6SVijay Mahadevan 557032b8ab6SVijay Mahadevan /* increment the new value of n */ 558032b8ab6SVijay Mahadevan ++n; 559032b8ab6SVijay Mahadevan 5609daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 561efd17f3eSVijay Mahadevan /* Make sure that n is consistent across all processes */ 5621c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &global_n, 1, MPI_INT, MPI_MAX, pcomm->comm())); 5639daf19fdSVijay Mahadevan #else 5649daf19fdSVijay Mahadevan global_n = n; 5659daf19fdSVijay Mahadevan #endif 566032b8ab6SVijay Mahadevan 567efd17f3eSVijay Mahadevan /* Set the new name accordingly and return */ 56863a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(*tag_name, PETSC_MAX_PATH_LEN - 1, "%s_%" PetscInt_FMT, PVEC_PREFIX, global_n)); 5699371c9d4SSatish Balay mberr = mbiface->tag_set_data(indexTag, &rootset, 1, (const void *)&global_n); 5709371c9d4SSatish Balay MBERRNM(mberr); 571032b8ab6SVijay Mahadevan PetscFunctionReturn(0); 572032b8ab6SVijay Mahadevan } 573032b8ab6SVijay Mahadevan 5749371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode DMCreateGlobalVector_Moab(DM dm, Vec *gvec) { 575f6829af0SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 576f6829af0SVijay Mahadevan 577f6829af0SVijay Mahadevan PetscFunctionBegin; 578f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 579f6829af0SVijay Mahadevan PetscValidPointer(gvec, 2); 5809566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, NULL, dmmoab->vowned, PETSC_TRUE, PETSC_TRUE, gvec)); 581f6829af0SVijay Mahadevan PetscFunctionReturn(0); 582f6829af0SVijay Mahadevan } 583f6829af0SVijay Mahadevan 5849371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode DMCreateLocalVector_Moab(DM dm, Vec *lvec) { 585f6829af0SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 586f6829af0SVijay Mahadevan 587f6829af0SVijay Mahadevan PetscFunctionBegin; 588f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 589f6829af0SVijay Mahadevan PetscValidPointer(lvec, 2); 5909566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, NULL, dmmoab->vlocal, PETSC_FALSE, PETSC_TRUE, lvec)); 591f6829af0SVijay Mahadevan PetscFunctionReturn(0); 592f6829af0SVijay Mahadevan } 593f6829af0SVijay Mahadevan 5949371c9d4SSatish Balay PetscErrorCode DMVecDuplicate_Moab(Vec x, Vec *y) { 595f6829af0SVijay Mahadevan DM dm; 596f6829af0SVijay Mahadevan PetscContainer moabdata; 597f6829af0SVijay Mahadevan Vec_MOAB *vmoab; 598f6829af0SVijay Mahadevan 599f6829af0SVijay Mahadevan PetscFunctionBegin; 600f6829af0SVijay Mahadevan PetscValidHeaderSpecific(x, VEC_CLASSID, 1); 601f6829af0SVijay Mahadevan PetscValidPointer(y, 2); 602f6829af0SVijay Mahadevan 603f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)x, "MOABData", (PetscObject *)&moabdata)); 6059566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 606f6829af0SVijay Mahadevan 6079566063dSJacob Faibussowitsch PetscCall(VecGetDM(x, &dm)); 608f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 609f6829af0SVijay Mahadevan 6109566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, NULL, vmoab->tag_range, vmoab->is_global_vec, PETSC_TRUE, y)); 6119566063dSJacob Faibussowitsch PetscCall(VecSetDM(*y, dm)); 612f6829af0SVijay Mahadevan PetscFunctionReturn(0); 613f6829af0SVijay Mahadevan } 614f6829af0SVijay Mahadevan 6159371c9d4SSatish Balay PetscErrorCode DMVecUserDestroy_Moab(void *user) { 616efd17f3eSVijay Mahadevan Vec_MOAB *vmoab = (Vec_MOAB *)user; 617032b8ab6SVijay Mahadevan moab::ErrorCode merr; 618032b8ab6SVijay Mahadevan 619032b8ab6SVijay Mahadevan PetscFunctionBegin; 620032b8ab6SVijay Mahadevan if (vmoab->new_tag && vmoab->tag) { 621efd17f3eSVijay Mahadevan /* Tag was created via a call to VecDuplicate, delete the underlying tag in MOAB */ 6229371c9d4SSatish Balay merr = vmoab->mbiface->tag_delete(vmoab->tag); 6239371c9d4SSatish Balay MBERRNM(merr); 624032b8ab6SVijay Mahadevan } 625032b8ab6SVijay Mahadevan delete vmoab->tag_range; 626c528d872SBarry Smith vmoab->tag = NULL; 627c528d872SBarry Smith vmoab->mbiface = NULL; 6289daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 629c528d872SBarry Smith vmoab->pcomm = NULL; 6309daf19fdSVijay Mahadevan #endif 6319566063dSJacob Faibussowitsch PetscCall(PetscFree(vmoab)); 632032b8ab6SVijay Mahadevan PetscFunctionReturn(0); 633032b8ab6SVijay Mahadevan } 634032b8ab6SVijay Mahadevan 6359371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode DMGlobalToLocalBegin_Moab(DM dm, Vec g, InsertMode mode, Vec l) { 636db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 637db66d124SVijay Mahadevan 638db66d124SVijay Mahadevan PetscFunctionBegin; 6399566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE)); 640db66d124SVijay Mahadevan PetscFunctionReturn(0); 641db66d124SVijay Mahadevan } 642db66d124SVijay Mahadevan 6439371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode DMGlobalToLocalEnd_Moab(DM dm, Vec g, InsertMode mode, Vec l) { 644db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 645db66d124SVijay Mahadevan 646db66d124SVijay Mahadevan PetscFunctionBegin; 6479566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE)); 648db66d124SVijay Mahadevan PetscFunctionReturn(0); 649db66d124SVijay Mahadevan } 650db66d124SVijay Mahadevan 6519371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode DMLocalToGlobalBegin_Moab(DM dm, Vec l, InsertMode mode, Vec g) { 652db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 653db66d124SVijay Mahadevan 654db66d124SVijay Mahadevan PetscFunctionBegin; 6559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD)); 656db66d124SVijay Mahadevan PetscFunctionReturn(0); 657db66d124SVijay Mahadevan } 658db66d124SVijay Mahadevan 6599371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode DMLocalToGlobalEnd_Moab(DM dm, Vec l, InsertMode mode, Vec g) { 660db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 661db66d124SVijay Mahadevan 662db66d124SVijay Mahadevan PetscFunctionBegin; 6639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD)); 664db66d124SVijay Mahadevan PetscFunctionReturn(0); 665db66d124SVijay Mahadevan } 666