1af0996ceSBarry Smith #include <petsc/private/dmmbimpl.h> /*I "petscdmmoab.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 3032b8ab6SVijay Mahadevan 4032b8ab6SVijay Mahadevan #include <petscdmmoab.h> 5032b8ab6SVijay Mahadevan #include <MBTagConventions.hpp> 6032b8ab6SVijay Mahadevan 79c368985SVijay Mahadevan #define USE_NATIVE_PETSCVEC 89c368985SVijay Mahadevan 9f6829af0SVijay Mahadevan /* declare some private DMMoab specific overrides */ 10*49abdd8aSBarry Smith static PetscErrorCode DMCreateVector_Moab_Private(DM, moab::Tag, const moab::Range *, PetscBool, PetscBool, Vec *); 11*49abdd8aSBarry Smith static PetscErrorCode DMVecCtxDestroy_Moab(void **); 12*49abdd8aSBarry Smith static PetscErrorCode DMVecDuplicate_Moab(Vec, Vec *); 139daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 14*49abdd8aSBarry Smith static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *, moab::ParallelComm *, char **); 159daf19fdSVijay Mahadevan #else 16*49abdd8aSBarry Smith static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *, char **); 179daf19fdSVijay Mahadevan #endif 18032b8ab6SVijay Mahadevan 19b8ecf6d3SVijay Mahadevan /*@C 20f6829af0SVijay Mahadevan DMMoabCreateVector - Create a Vec from either an existing tag, or a specified tag size, and a range of entities 21f6829af0SVijay Mahadevan 22d083f849SBarry Smith Collective 23f6829af0SVijay Mahadevan 24d8d19677SJose E. Roman Input Parameters: 25b8ecf6d3SVijay Mahadevan + dm - The DMMoab object being set 26f6829af0SVijay Mahadevan . tag - If non-zero, block size will be taken from the tag size 27f6829af0SVijay Mahadevan . range - If non-empty, Vec corresponds to these entities, otherwise to the entities set on the DMMoab 28f6829af0SVijay Mahadevan . is_global_vec - If true, this is a local representation of the Vec (including ghosts in parallel), otherwise a truly parallel one 29a2b725a8SWilliam Gropp - destroy_tag - If true, MOAB tag is destroyed with Vec, otherwise it is left on MOAB 30f6829af0SVijay Mahadevan 31f6829af0SVijay Mahadevan Output Parameter: 32f6829af0SVijay Mahadevan . vec - The created vector 33f6829af0SVijay Mahadevan 34f6829af0SVijay Mahadevan Level: beginner 35f6829af0SVijay Mahadevan 36db781477SPatrick Sanan .seealso: `VecCreate()` 37f6829af0SVijay Mahadevan @*/ 38d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag, const moab::Range *range, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) 39d71ae5a4SJacob Faibussowitsch { 40f6829af0SVijay Mahadevan PetscFunctionBegin; 417a8be351SBarry Smith PetscCheck(tag || (range && !range->empty()), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Both tag and range cannot be null."); 42f6829af0SVijay Mahadevan 439566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, tag, range, is_global_vec, destroy_tag, vec)); 443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45f6829af0SVijay Mahadevan } 46f6829af0SVijay Mahadevan 47b8ecf6d3SVijay Mahadevan /*@C 48f6829af0SVijay Mahadevan DMMoabGetVecTag - Get the MOAB tag associated with this Vec 49f6829af0SVijay Mahadevan 50f6829af0SVijay Mahadevan Input Parameter: 51f6829af0SVijay Mahadevan . vec - Vec being queried 52f6829af0SVijay Mahadevan 53f6829af0SVijay Mahadevan Output Parameter: 54f6829af0SVijay Mahadevan . tag - Tag associated with this Vec. NULL if vec is a native PETSc Vec. 55f6829af0SVijay Mahadevan 56f6829af0SVijay Mahadevan Level: beginner 57f6829af0SVijay Mahadevan 58db781477SPatrick Sanan .seealso: `DMMoabCreateVector()`, `DMMoabGetVecRange()` 59f6829af0SVijay Mahadevan @*/ 60d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabGetVecTag(Vec vec, moab::Tag *tag) 61d71ae5a4SJacob Faibussowitsch { 62f6829af0SVijay Mahadevan PetscContainer moabdata; 63f6829af0SVijay Mahadevan Vec_MOAB *vmoab; 64f6829af0SVijay Mahadevan 65f6829af0SVijay Mahadevan PetscFunctionBegin; 664f572ea9SToby Isaac PetscAssertPointer(tag, 2); 67f6829af0SVijay Mahadevan 68f6829af0SVijay Mahadevan /* Get the MOAB private data */ 699566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 709566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 71f6829af0SVijay Mahadevan 72f6829af0SVijay Mahadevan *tag = vmoab->tag; 733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74f6829af0SVijay Mahadevan } 75f6829af0SVijay Mahadevan 76b8ecf6d3SVijay Mahadevan /*@C 77f6829af0SVijay Mahadevan DMMoabGetVecRange - Get the MOAB entities associated with this Vec 78f6829af0SVijay Mahadevan 79f6829af0SVijay Mahadevan Input Parameter: 80f6829af0SVijay Mahadevan . vec - Vec being queried 81f6829af0SVijay Mahadevan 82f6829af0SVijay Mahadevan Output Parameter: 83f6829af0SVijay Mahadevan . range - Entities associated with this Vec. NULL if vec is a native PETSc Vec. 84f6829af0SVijay Mahadevan 85f6829af0SVijay Mahadevan Level: beginner 86f6829af0SVijay Mahadevan 87db781477SPatrick Sanan .seealso: `DMMoabCreateVector()`, `DMMoabGetVecTag()` 88f6829af0SVijay Mahadevan @*/ 89d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabGetVecRange(Vec vec, moab::Range *range) 90d71ae5a4SJacob Faibussowitsch { 91f6829af0SVijay Mahadevan PetscContainer moabdata; 92f6829af0SVijay Mahadevan Vec_MOAB *vmoab; 93f6829af0SVijay Mahadevan 94f6829af0SVijay Mahadevan PetscFunctionBegin; 954f572ea9SToby Isaac PetscAssertPointer(range, 2); 96f6829af0SVijay Mahadevan 97f6829af0SVijay Mahadevan /* Get the MOAB private data handle */ 989566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 999566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 100f6829af0SVijay Mahadevan 101f6829af0SVijay Mahadevan *range = *vmoab->tag_range; 1023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103f6829af0SVijay Mahadevan } 104f6829af0SVijay Mahadevan 105b8ecf6d3SVijay Mahadevan /*@C 106f6829af0SVijay Mahadevan DMMoabVecGetArray - Returns the writable direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities 107f6829af0SVijay Mahadevan 108d083f849SBarry Smith Collective 109f6829af0SVijay Mahadevan 110d8d19677SJose E. Roman Input Parameters: 111a2b725a8SWilliam Gropp + dm - The DMMoab object being set 112a2b725a8SWilliam Gropp - vec - The Vector whose underlying data is requested 113f6829af0SVijay Mahadevan 114f6829af0SVijay Mahadevan Output Parameter: 115f6829af0SVijay Mahadevan . array - The local data array 116f6829af0SVijay Mahadevan 117f6829af0SVijay Mahadevan Level: intermediate 118f6829af0SVijay Mahadevan 119db781477SPatrick Sanan .seealso: `DMMoabVecRestoreArray()`, `DMMoabVecGetArrayRead()`, `DMMoabVecRestoreArrayRead()` 120f6829af0SVijay Mahadevan @*/ 121d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabVecGetArray(DM dm, Vec vec, void *array) 122d71ae5a4SJacob Faibussowitsch { 123f6829af0SVijay Mahadevan DM_Moab *dmmoab; 124f6829af0SVijay Mahadevan moab::ErrorCode merr; 125f6829af0SVijay Mahadevan PetscInt count, i, f; 126f6829af0SVijay Mahadevan moab::Tag vtag; 127f6829af0SVijay Mahadevan PetscScalar **varray; 128f6829af0SVijay Mahadevan PetscScalar *marray; 129f6829af0SVijay Mahadevan PetscContainer moabdata; 130f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 131f6829af0SVijay Mahadevan 132f6829af0SVijay Mahadevan PetscFunctionBegin; 133f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 134f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 1354f572ea9SToby Isaac PetscAssertPointer(array, 3); 136f6829af0SVijay Mahadevan dmmoab = (DM_Moab *)dm->data; 137f6829af0SVijay Mahadevan 138f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 1399566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 1409566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 141f6829af0SVijay Mahadevan 142f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 143f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 144f6829af0SVijay Mahadevan 145f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 146f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 1479566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &vmoab->local)); 1489566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local)); 1499566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local)); 150f6829af0SVijay Mahadevan 151f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 1529566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 1539566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); 154f6829af0SVijay Mahadevan 155f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 1569566063dSJacob Faibussowitsch PetscCall(VecGhostGetLocalForm(vmoab->local, &xmoab->local)); 1579566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 1589566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 159f6829af0SVijay Mahadevan 1609566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmoab->local, varray)); 1611baa6e33SBarry Smith } else { 162f6829af0SVijay Mahadevan /* Get the MOAB private data */ 1639566063dSJacob Faibussowitsch PetscCall(DMMoabGetVecTag(vec, &vtag)); 164f6829af0SVijay Mahadevan 1659daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 166f6829af0SVijay Mahadevan /* exchange the data into ghost cells first */ 1679371c9d4SSatish Balay merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); 1689371c9d4SSatish Balay MBERRNM(merr); 1699daf19fdSVijay Mahadevan #endif 170f6829af0SVijay Mahadevan 1719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray)); 172f6829af0SVijay Mahadevan 173f6829af0SVijay Mahadevan /* Get the array data for local entities */ 1749371c9d4SSatish Balay merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void *&>(marray), false); 1759371c9d4SSatish Balay MBERRNM(merr); 1761dca8a05SBarry Smith PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); 177f6829af0SVijay Mahadevan 178f6829af0SVijay Mahadevan i = 0; 179f6829af0SVijay Mahadevan for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { 1809371c9d4SSatish Balay for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f] = marray[i]; 1813f1c6e43SVijay Mahadevan //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; 182f6829af0SVijay Mahadevan } 183f6829af0SVijay Mahadevan } 1843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 185f6829af0SVijay Mahadevan } 186f6829af0SVijay Mahadevan 187b8ecf6d3SVijay Mahadevan /*@C 188f6829af0SVijay Mahadevan DMMoabVecRestoreArray - Restores the writable direct access array obtained via DMMoabVecGetArray 189f6829af0SVijay Mahadevan 190d083f849SBarry Smith Collective 191f6829af0SVijay Mahadevan 192d8d19677SJose E. Roman Input Parameters: 193f6829af0SVijay Mahadevan + dm - The DMMoab object being set 194f6829af0SVijay Mahadevan . vec - The Vector whose underlying data is requested 195a2b725a8SWilliam Gropp - array - The local data array 196f6829af0SVijay Mahadevan 197f6829af0SVijay Mahadevan Level: intermediate 198f6829af0SVijay Mahadevan 199db781477SPatrick Sanan .seealso: `DMMoabVecGetArray()`, `DMMoabVecGetArrayRead()`, `DMMoabVecRestoreArrayRead()` 200f6829af0SVijay Mahadevan @*/ 201d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabVecRestoreArray(DM dm, Vec vec, void *array) 202d71ae5a4SJacob Faibussowitsch { 203f6829af0SVijay Mahadevan DM_Moab *dmmoab; 204f6829af0SVijay Mahadevan moab::ErrorCode merr; 205f6829af0SVijay Mahadevan moab::Tag vtag; 206f6829af0SVijay Mahadevan PetscInt count, i, f; 207f6829af0SVijay Mahadevan PetscScalar **varray; 208f6829af0SVijay Mahadevan PetscScalar *marray; 209f6829af0SVijay Mahadevan PetscContainer moabdata; 210f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 211f6829af0SVijay Mahadevan 212f6829af0SVijay Mahadevan PetscFunctionBegin; 213f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 214f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 2154f572ea9SToby Isaac PetscAssertPointer(array, 3); 216f6829af0SVijay Mahadevan dmmoab = (DM_Moab *)dm->data; 217f6829af0SVijay Mahadevan 218f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 2199566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 2209566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 221f6829af0SVijay Mahadevan 222f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 223f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 224f6829af0SVijay Mahadevan 225f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 226f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 2279566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 2289566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); 229f6829af0SVijay Mahadevan 230f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 2319566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmoab->local, varray)); 2329566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateBegin(vmoab->local, ADD_VALUES, SCATTER_REVERSE)); 2339566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateEnd(vmoab->local, ADD_VALUES, SCATTER_REVERSE)); 2349566063dSJacob Faibussowitsch PetscCall(VecGhostRestoreLocalForm(vmoab->local, &xmoab->local)); 235f6829af0SVijay Mahadevan 236f6829af0SVijay Mahadevan /* restore local pieces */ 2379566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, vmoab->local, INSERT_VALUES, vec)); 2389566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, vmoab->local, INSERT_VALUES, vec)); 2399566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &vmoab->local)); 2409371c9d4SSatish Balay } else { 241f6829af0SVijay Mahadevan /* Get the MOAB private data */ 2429566063dSJacob Faibussowitsch PetscCall(DMMoabGetVecTag(vec, &vtag)); 243f6829af0SVijay Mahadevan 244f6829af0SVijay Mahadevan /* Get the array data for local entities */ 2459371c9d4SSatish Balay merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void *&>(marray), false); 2469371c9d4SSatish Balay MBERRNM(merr); 2471dca8a05SBarry Smith PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); 248f6829af0SVijay Mahadevan 249f6829af0SVijay Mahadevan i = 0; 250f6829af0SVijay Mahadevan for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { 2519371c9d4SSatish Balay for (f = 0; f < dmmoab->numFields; f++, i++) marray[i] = (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f]; 2523f1c6e43SVijay Mahadevan //marray[i] = (*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]; 253f6829af0SVijay Mahadevan } 254f6829af0SVijay Mahadevan 2559daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 256f6829af0SVijay Mahadevan /* reduce the tags correctly -> should probably let the user choose how to reduce in the future 257f6829af0SVijay Mahadevan For all FEM residual based assembly calculations, MPI_SUM should serve well */ 2589371c9d4SSatish Balay merr = dmmoab->pcomm->reduce_tags(vtag, MPI_SUM, *dmmoab->vlocal); 2599371c9d4SSatish Balay MBERRV(dmmoab->mbiface, merr); 2609daf19fdSVijay Mahadevan #endif 2619566063dSJacob Faibussowitsch PetscCall(PetscFree(*varray)); 262f6829af0SVijay Mahadevan } 2633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 264f6829af0SVijay Mahadevan } 265f6829af0SVijay Mahadevan 266b8ecf6d3SVijay Mahadevan /*@C 267f6829af0SVijay Mahadevan DMMoabVecGetArrayRead - Returns the read-only direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities 268f6829af0SVijay Mahadevan 269d083f849SBarry Smith Collective 270f6829af0SVijay Mahadevan 271d8d19677SJose E. Roman Input Parameters: 272f6829af0SVijay Mahadevan + dm - The DMMoab object being set 273a2b725a8SWilliam Gropp - vec - The Vector whose underlying data is requested 274f6829af0SVijay Mahadevan 275f6829af0SVijay Mahadevan Output Parameter: 276f6829af0SVijay Mahadevan . array - The local data array 277f6829af0SVijay Mahadevan 278f6829af0SVijay Mahadevan Level: intermediate 279f6829af0SVijay Mahadevan 280db781477SPatrick Sanan .seealso: `DMMoabVecRestoreArrayRead()`, `DMMoabVecGetArray()`, `DMMoabVecRestoreArray()` 281f6829af0SVijay Mahadevan @*/ 282d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabVecGetArrayRead(DM dm, Vec vec, void *array) 283d71ae5a4SJacob Faibussowitsch { 284f6829af0SVijay Mahadevan DM_Moab *dmmoab; 285f6829af0SVijay Mahadevan moab::ErrorCode merr; 286f6829af0SVijay Mahadevan PetscInt count, i, f; 287f6829af0SVijay Mahadevan moab::Tag vtag; 288f6829af0SVijay Mahadevan PetscScalar **varray; 289f6829af0SVijay Mahadevan PetscScalar *marray; 290f6829af0SVijay Mahadevan PetscContainer moabdata; 291f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 292f6829af0SVijay Mahadevan 293f6829af0SVijay Mahadevan PetscFunctionBegin; 294f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 295f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 2964f572ea9SToby Isaac PetscAssertPointer(array, 3); 297f6829af0SVijay Mahadevan dmmoab = (DM_Moab *)dm->data; 298f6829af0SVijay Mahadevan 299f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3009566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 3019566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 302f6829af0SVijay Mahadevan 303f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 304f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 305f6829af0SVijay Mahadevan 306f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 307f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 3089566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &vmoab->local)); 3099566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local)); 3109566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local)); 311f6829af0SVijay Mahadevan 312f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3139566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 3149566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); 315f6829af0SVijay Mahadevan 316f6829af0SVijay Mahadevan /* get the local representation of the arrays from Vectors */ 3179566063dSJacob Faibussowitsch PetscCall(VecGhostGetLocalForm(vmoab->local, &xmoab->local)); 3189566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 3199566063dSJacob Faibussowitsch PetscCall(VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD)); 3209566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmoab->local, varray)); 3219371c9d4SSatish Balay } else { 322f6829af0SVijay Mahadevan /* Get the MOAB private data */ 3239566063dSJacob Faibussowitsch PetscCall(DMMoabGetVecTag(vec, &vtag)); 324f6829af0SVijay Mahadevan 3259daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 326f6829af0SVijay Mahadevan /* exchange the data into ghost cells first */ 3279371c9d4SSatish Balay merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); 3289371c9d4SSatish Balay MBERRNM(merr); 3299daf19fdSVijay Mahadevan #endif 3309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray)); 331f6829af0SVijay Mahadevan 332f6829af0SVijay Mahadevan /* Get the array data for local entities */ 3339371c9d4SSatish Balay merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void *&>(marray), false); 3349371c9d4SSatish Balay MBERRNM(merr); 3351dca8a05SBarry Smith PetscCheck(count == dmmoab->nloc + dmmoab->nghost, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %" PetscInt_FMT " != %" PetscInt_FMT ".", count, dmmoab->nloc + dmmoab->nghost); 336f6829af0SVijay Mahadevan 337f6829af0SVijay Mahadevan i = 0; 338f6829af0SVijay Mahadevan for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) { 3399371c9d4SSatish Balay for (f = 0; f < dmmoab->numFields; f++, i++) (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart] * dmmoab->numFields + f] = marray[i]; 3403f1c6e43SVijay Mahadevan //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i]; 341f6829af0SVijay Mahadevan } 342f6829af0SVijay Mahadevan } 3433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 344f6829af0SVijay Mahadevan } 345f6829af0SVijay Mahadevan 346b8ecf6d3SVijay Mahadevan /*@C 3474597dd3dSJose E. Roman DMMoabVecRestoreArrayRead - Restores the read-only direct access array obtained via DMMoabVecGetArray 348f6829af0SVijay Mahadevan 349d083f849SBarry Smith Collective 350f6829af0SVijay Mahadevan 35197bb3fdcSJose E. Roman Input Parameters: 352f6829af0SVijay Mahadevan + dm - The DMMoab object being set 353f6829af0SVijay Mahadevan . vec - The Vector whose underlying data is requested 354a2b725a8SWilliam Gropp - array - The local data array 355f6829af0SVijay Mahadevan 356f6829af0SVijay Mahadevan Level: intermediate 357f6829af0SVijay Mahadevan 358db781477SPatrick Sanan .seealso: `DMMoabVecGetArrayRead()`, `DMMoabVecGetArray()`, `DMMoabVecRestoreArray()` 359f6829af0SVijay Mahadevan @*/ 360d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMoabVecRestoreArrayRead(DM dm, Vec vec, void *array) 361d71ae5a4SJacob Faibussowitsch { 362f6829af0SVijay Mahadevan PetscScalar **varray; 363f6829af0SVijay Mahadevan PetscContainer moabdata; 364f6829af0SVijay Mahadevan Vec_MOAB *vmoab, *xmoab; 365f6829af0SVijay Mahadevan 366f6829af0SVijay Mahadevan PetscFunctionBegin; 367f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 368f6829af0SVijay Mahadevan PetscValidHeaderSpecific(vec, VEC_CLASSID, 2); 3694f572ea9SToby Isaac PetscAssertPointer(array, 3); 370f6829af0SVijay Mahadevan 371f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3729566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject *)&moabdata)); 3739566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 374f6829af0SVijay Mahadevan 375f6829af0SVijay Mahadevan /* Get the real scalar array handle */ 376f6829af0SVijay Mahadevan varray = reinterpret_cast<PetscScalar **>(array); 377f6829af0SVijay Mahadevan 378f6829af0SVijay Mahadevan if (vmoab->is_native_vec) { 379f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 3809566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject *)&moabdata)); 3819566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&xmoab)); 382f6829af0SVijay Mahadevan 383f6829af0SVijay Mahadevan /* restore the local representation of the arrays from Vectors */ 3849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmoab->local, varray)); 3859566063dSJacob Faibussowitsch PetscCall(VecGhostRestoreLocalForm(vmoab->local, &xmoab->local)); 386f6829af0SVijay Mahadevan 387f6829af0SVijay Mahadevan /* restore local pieces */ 3889566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &vmoab->local)); 3899371c9d4SSatish Balay } else { 390f6829af0SVijay Mahadevan /* Nothing to do but just free the memory allocated before */ 3919566063dSJacob Faibussowitsch PetscCall(PetscFree(*varray)); 392f6829af0SVijay Mahadevan } 3933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 394f6829af0SVijay Mahadevan } 395f6829af0SVijay Mahadevan 39666976f2fSJacob Faibussowitsch static PetscErrorCode DMCreateVector_Moab_Private(DM dm, moab::Tag tag, const moab::Range *userrange, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec) 397d71ae5a4SJacob Faibussowitsch { 398032b8ab6SVijay Mahadevan moab::ErrorCode merr; 399032b8ab6SVijay Mahadevan PetscBool is_newtag; 400351b8a77SVijay Mahadevan const moab::Range *range; 401bb8f3634SVijay Mahadevan PetscInt count, lnative_vec, gnative_vec; 4029088682fSVijay Mahadevan std::string ttname; 403c4427235SVijay Mahadevan PetscScalar *data_ptr, *defaultvals; 404032b8ab6SVijay Mahadevan 405db66d124SVijay Mahadevan Vec_MOAB *vmoab; 406032b8ab6SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 4079daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 408032b8ab6SVijay Mahadevan moab::ParallelComm *pcomm = dmmoab->pcomm; 4099daf19fdSVijay Mahadevan #endif 410032b8ab6SVijay Mahadevan moab::Interface *mbiface = dmmoab->mbiface; 411032b8ab6SVijay Mahadevan 412032b8ab6SVijay Mahadevan PetscFunctionBegin; 41308401ef6SPierre Jolivet PetscCheck(sizeof(PetscReal) == sizeof(PetscScalar), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "MOAB tags only support Real types (Complex-type unsupported)"); 414032b8ab6SVijay Mahadevan if (!userrange) range = dmmoab->vowned; 415032b8ab6SVijay Mahadevan else range = userrange; 4167a8be351SBarry Smith PetscCheck(range, PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "Input range cannot be empty or call DMSetUp first."); 417032b8ab6SVijay Mahadevan 4183ac71f70SVijay Mahadevan #ifndef USE_NATIVE_PETSCVEC 419bb8f3634SVijay Mahadevan /* If the tag data is in a single sequence, use PETSc native vector since tag_iterate isn't useful anymore */ 420bb8f3634SVijay Mahadevan lnative_vec = (range->psize() - 1); 4213ac71f70SVijay Mahadevan #else 4223ac71f70SVijay Mahadevan lnative_vec = 1; /* NOTE: Testing PETSc vector: will force to create native vector all the time */ 4236465f021SVijay Mahadevan // lnative_vec=0; /* NOTE: Testing MOAB vector: will force to create MOAB tag_iterate based vector all the time */ 424f6829af0SVijay Mahadevan #endif 4253ac71f70SVijay Mahadevan 4269daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 42757508eceSPierre Jolivet PetscCallMPI(MPIU_Allreduce(&lnative_vec, &gnative_vec, 1, MPI_INT, MPI_MAX, ((PetscObject)dm)->comm)); 4289daf19fdSVijay Mahadevan #else 4299daf19fdSVijay Mahadevan gnative_vec = lnative_vec; 4309daf19fdSVijay Mahadevan #endif 431bb8f3634SVijay Mahadevan 432bb8f3634SVijay Mahadevan /* Create the MOAB internal data object */ 4339566063dSJacob Faibussowitsch PetscCall(PetscNew(&vmoab)); 434bb8f3634SVijay Mahadevan vmoab->is_native_vec = (gnative_vec > 0 ? PETSC_TRUE : PETSC_FALSE); 435bb8f3634SVijay Mahadevan 436bb8f3634SVijay Mahadevan if (!vmoab->is_native_vec) { 4373ac71f70SVijay Mahadevan merr = moab::MB_SUCCESS; 43864e1c140SVijay Mahadevan if (tag != 0) merr = mbiface->tag_get_name(tag, ttname); 43964e1c140SVijay Mahadevan if (!ttname.length() || merr != moab::MB_SUCCESS) { 440db66d124SVijay Mahadevan /* get the new name for the anonymous MOABVec -> the tag_name will be destroyed along with Tag */ 441c528d872SBarry Smith char *tag_name = NULL; 4429daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 4439566063dSJacob Faibussowitsch PetscCall(DMVecCreateTagName_Moab_Private(mbiface, pcomm, &tag_name)); 4449daf19fdSVijay Mahadevan #else 4459566063dSJacob Faibussowitsch PetscCall(DMVecCreateTagName_Moab_Private(mbiface, &tag_name)); 4469daf19fdSVijay Mahadevan #endif 447032b8ab6SVijay Mahadevan is_newtag = PETSC_TRUE; 448032b8ab6SVijay Mahadevan 449db66d124SVijay Mahadevan /* Create the default value for the tag (all zeros) */ 4509566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dmmoab->numFields, &defaultvals)); 451032b8ab6SVijay Mahadevan 452db66d124SVijay Mahadevan /* Create the tag */ 4539371c9d4SSatish Balay merr = mbiface->tag_get_handle(tag_name, dmmoab->numFields, moab::MB_TYPE_DOUBLE, tag, moab::MB_TAG_DENSE | moab::MB_TAG_CREAT, defaultvals); 4549371c9d4SSatish Balay MBERRNM(merr); 4559566063dSJacob Faibussowitsch PetscCall(PetscFree(tag_name)); 4569566063dSJacob Faibussowitsch PetscCall(PetscFree(defaultvals)); 4579371c9d4SSatish Balay } else { 458db66d124SVijay Mahadevan /* Make sure the tag data is of type "double" */ 459032b8ab6SVijay Mahadevan moab::DataType tag_type; 4609371c9d4SSatish Balay merr = mbiface->tag_get_data_type(tag, tag_type); 4619371c9d4SSatish Balay MBERRNM(merr); 4621dca8a05SBarry Smith PetscCheck(tag_type == moab::MB_TYPE_DOUBLE, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Tag data type must be MB_TYPE_DOUBLE"); 463032b8ab6SVijay Mahadevan is_newtag = destroy_tag; 464032b8ab6SVijay Mahadevan } 465032b8ab6SVijay Mahadevan 466032b8ab6SVijay Mahadevan vmoab->tag = tag; 467bb8f3634SVijay Mahadevan vmoab->new_tag = is_newtag; 468bb8f3634SVijay Mahadevan } 469032b8ab6SVijay Mahadevan vmoab->mbiface = mbiface; 4709daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 471032b8ab6SVijay Mahadevan vmoab->pcomm = pcomm; 4729daf19fdSVijay Mahadevan #endif 473032b8ab6SVijay Mahadevan vmoab->is_global_vec = is_global_vec; 474bb8f3634SVijay Mahadevan vmoab->tag_size = dmmoab->bs; 475032b8ab6SVijay Mahadevan 476bb8f3634SVijay Mahadevan if (vmoab->is_native_vec) { 477bb8f3634SVijay Mahadevan /* Create the PETSc Vector directly and attach our functions accordingly */ 478bb8f3634SVijay Mahadevan if (!is_global_vec) { 479bb8f3634SVijay Mahadevan /* This is an MPI Vector with ghosted padding */ 48057508eceSPierre Jolivet PetscCall(VecCreateGhostBlock(((PetscObject)dm)->comm, dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], vec)); 4815f80ce2aSJacob Faibussowitsch } else { 482bb8f3634SVijay Mahadevan /* This is an MPI/SEQ Vector */ 48357508eceSPierre Jolivet PetscCall(VecCreate(((PetscObject)dm)->comm, vec)); 4849566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*vec, dmmoab->numFields * dmmoab->nloc, PETSC_DECIDE)); 4859566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(*vec, dmmoab->bs)); 4869566063dSJacob Faibussowitsch PetscCall(VecSetType(*vec, VECMPI)); 487bb8f3634SVijay Mahadevan } 4885f80ce2aSJacob Faibussowitsch } else { 489db66d124SVijay Mahadevan /* Call tag_iterate. This will cause MOAB to allocate memory for the 490db66d124SVijay Mahadevan tag data if it hasn't already happened */ 4919371c9d4SSatish Balay merr = mbiface->tag_iterate(tag, range->begin(), range->end(), count, (void *&)data_ptr); 4929371c9d4SSatish Balay MBERRNM(merr); 493032b8ab6SVijay Mahadevan 494bb8f3634SVijay Mahadevan /* set the reference for vector range */ 495bb8f3634SVijay Mahadevan vmoab->tag_range = new moab::Range(*range); 4969371c9d4SSatish Balay merr = mbiface->tag_get_length(tag, dmmoab->numFields); 4979371c9d4SSatish Balay MBERRNM(merr); 498032b8ab6SVijay Mahadevan 499db66d124SVijay Mahadevan /* Create the PETSc Vector 500db66d124SVijay Mahadevan Query MOAB mesh to check if there are any ghosted entities 501032b8ab6SVijay Mahadevan -> if we do, create a ghosted vector to map correctly to the same layout 502032b8ab6SVijay Mahadevan -> else, create a non-ghosted parallel vector */ 503bb8f3634SVijay Mahadevan if (!is_global_vec) { 504db66d124SVijay Mahadevan /* This is an MPI Vector with ghosted padding */ 50557508eceSPierre Jolivet PetscCall(VecCreateGhostBlockWithArray(((PetscObject)dm)->comm, dmmoab->bs, dmmoab->numFields * dmmoab->nloc, dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], data_ptr, vec)); 5065f80ce2aSJacob Faibussowitsch } else { 507bb8f3634SVijay Mahadevan /* This is an MPI Vector without ghosted padding */ 50857508eceSPierre Jolivet PetscCall(VecCreateMPIWithArray(((PetscObject)dm)->comm, dmmoab->bs, dmmoab->numFields * range->size(), PETSC_DECIDE, data_ptr, vec)); 509032b8ab6SVijay Mahadevan } 510bb8f3634SVijay Mahadevan } 5119566063dSJacob Faibussowitsch PetscCall(VecSetFromOptions(*vec)); 512032b8ab6SVijay Mahadevan 513f6829af0SVijay Mahadevan /* create a container and store the internal MOAB data for faster access based on Entities etc */ 514*49abdd8aSBarry Smith PetscCall(PetscObjectContainerCompose((PetscObject)*vec, "MOABData", vmoab, DMVecCtxDestroy_Moab)); 515f6829af0SVijay Mahadevan (*vec)->ops->duplicate = DMVecDuplicate_Moab; 516032b8ab6SVijay Mahadevan 517db66d124SVijay Mahadevan /* Vector created, manually set local to global mapping */ 51848a46eb9SPierre Jolivet if (dmmoab->ltog_map) PetscCall(VecSetLocalToGlobalMapping(*vec, dmmoab->ltog_map)); 519032b8ab6SVijay Mahadevan 520032b8ab6SVijay Mahadevan /* set the DM reference to the vector */ 5219566063dSJacob Faibussowitsch PetscCall(VecSetDM(*vec, dm)); 5223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 523032b8ab6SVijay Mahadevan } 524032b8ab6SVijay Mahadevan 525f6829af0SVijay Mahadevan /* DMVecCreateTagName_Moab_Private 526032b8ab6SVijay Mahadevan * 527032b8ab6SVijay Mahadevan * Creates a unique tag name that will be shared across processes. If 528032b8ab6SVijay Mahadevan * pcomm is NULL, then this is a serial vector. A unique tag name 529032b8ab6SVijay Mahadevan * will be returned in tag_name in either case. 530032b8ab6SVijay Mahadevan * 531032b8ab6SVijay Mahadevan * The tag names have the format _PETSC_VEC_N where N is some integer. 532032b8ab6SVijay Mahadevan * 533032b8ab6SVijay Mahadevan * NOTE: The tag_name is allocated in this routine; The user needs to free 534032b8ab6SVijay Mahadevan * the character array. 535032b8ab6SVijay Mahadevan */ 5369daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 5379daf19fdSVijay Mahadevan PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, moab::ParallelComm *pcomm, char **tag_name) 5389daf19fdSVijay Mahadevan #else 53966976f2fSJacob Faibussowitsch static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, char **tag_name) 5409daf19fdSVijay Mahadevan #endif 541032b8ab6SVijay Mahadevan { 542032b8ab6SVijay Mahadevan moab::ErrorCode mberr; 543032b8ab6SVijay Mahadevan PetscInt n, global_n; 544032b8ab6SVijay Mahadevan moab::Tag indexTag; 545032b8ab6SVijay Mahadevan 546032b8ab6SVijay Mahadevan PetscFunctionBegin; 547032b8ab6SVijay Mahadevan const char *PVEC_PREFIX = "__PETSC_VEC_"; 5489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PETSC_MAX_PATH_LEN, tag_name)); 549032b8ab6SVijay Mahadevan 550032b8ab6SVijay Mahadevan moab::EntityHandle rootset = mbiface->get_root_set(); 551032b8ab6SVijay Mahadevan 5529daf19fdSVijay Mahadevan /* Check to see if there are any PETSc vectors defined */ 553efd17f3eSVijay Mahadevan /* Create a tag in MOAB mesh to index and keep track of number of Petsc vec tags */ 5549371c9d4SSatish Balay mberr = mbiface->tag_get_handle("__PETSC_VECS__", 1, moab::MB_TYPE_INTEGER, indexTag, moab::MB_TAG_SPARSE | moab::MB_TAG_CREAT, 0); 5559371c9d4SSatish Balay MBERRNM(mberr); 556032b8ab6SVijay Mahadevan mberr = mbiface->tag_get_data(indexTag, &rootset, 1, &n); 557032b8ab6SVijay Mahadevan if (mberr == moab::MB_TAG_NOT_FOUND) n = 0; /* this is the first temporary vector */ 558032b8ab6SVijay Mahadevan else MBERRNM(mberr); 559032b8ab6SVijay Mahadevan 560032b8ab6SVijay Mahadevan /* increment the new value of n */ 561032b8ab6SVijay Mahadevan ++n; 562032b8ab6SVijay Mahadevan 5639daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 564efd17f3eSVijay Mahadevan /* Make sure that n is consistent across all processes */ 565462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &global_n, 1, MPI_INT, MPI_MAX, pcomm->comm())); 5669daf19fdSVijay Mahadevan #else 5679daf19fdSVijay Mahadevan global_n = n; 5689daf19fdSVijay Mahadevan #endif 569032b8ab6SVijay Mahadevan 570efd17f3eSVijay Mahadevan /* Set the new name accordingly and return */ 57163a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(*tag_name, PETSC_MAX_PATH_LEN - 1, "%s_%" PetscInt_FMT, PVEC_PREFIX, global_n)); 5729371c9d4SSatish Balay mberr = mbiface->tag_set_data(indexTag, &rootset, 1, (const void *)&global_n); 5739371c9d4SSatish Balay MBERRNM(mberr); 5743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 575032b8ab6SVijay Mahadevan } 576032b8ab6SVijay Mahadevan 577d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreateGlobalVector_Moab(DM dm, Vec *gvec) 578d71ae5a4SJacob Faibussowitsch { 579f6829af0SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 580f6829af0SVijay Mahadevan 581f6829af0SVijay Mahadevan PetscFunctionBegin; 582f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5834f572ea9SToby Isaac PetscAssertPointer(gvec, 2); 5849566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, NULL, dmmoab->vowned, PETSC_TRUE, PETSC_TRUE, gvec)); 5853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 586f6829af0SVijay Mahadevan } 587f6829af0SVijay Mahadevan 588d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMCreateLocalVector_Moab(DM dm, Vec *lvec) 589d71ae5a4SJacob Faibussowitsch { 590f6829af0SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 591f6829af0SVijay Mahadevan 592f6829af0SVijay Mahadevan PetscFunctionBegin; 593f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5944f572ea9SToby Isaac PetscAssertPointer(lvec, 2); 5959566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, NULL, dmmoab->vlocal, PETSC_FALSE, PETSC_TRUE, lvec)); 5963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 597f6829af0SVijay Mahadevan } 598f6829af0SVijay Mahadevan 59966976f2fSJacob Faibussowitsch static PetscErrorCode DMVecDuplicate_Moab(Vec x, Vec *y) 600d71ae5a4SJacob Faibussowitsch { 601f6829af0SVijay Mahadevan DM dm; 602f6829af0SVijay Mahadevan PetscContainer moabdata; 603f6829af0SVijay Mahadevan Vec_MOAB *vmoab; 604f6829af0SVijay Mahadevan 605f6829af0SVijay Mahadevan PetscFunctionBegin; 606f6829af0SVijay Mahadevan PetscValidHeaderSpecific(x, VEC_CLASSID, 1); 6074f572ea9SToby Isaac PetscAssertPointer(y, 2); 608f6829af0SVijay Mahadevan 609f6829af0SVijay Mahadevan /* Get the Vec_MOAB struct for the original vector */ 6109566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)x, "MOABData", (PetscObject *)&moabdata)); 6119566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(moabdata, (void **)&vmoab)); 612f6829af0SVijay Mahadevan 6139566063dSJacob Faibussowitsch PetscCall(VecGetDM(x, &dm)); 614f6829af0SVijay Mahadevan PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 615f6829af0SVijay Mahadevan 6169566063dSJacob Faibussowitsch PetscCall(DMCreateVector_Moab_Private(dm, NULL, vmoab->tag_range, vmoab->is_global_vec, PETSC_TRUE, y)); 6179566063dSJacob Faibussowitsch PetscCall(VecSetDM(*y, dm)); 6183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 619f6829af0SVijay Mahadevan } 620f6829af0SVijay Mahadevan 621*49abdd8aSBarry Smith static PetscErrorCode DMVecCtxDestroy_Moab(void **user) 622d71ae5a4SJacob Faibussowitsch { 623*49abdd8aSBarry Smith Vec_MOAB *vmoab = (Vec_MOAB *)*user; 624032b8ab6SVijay Mahadevan moab::ErrorCode merr; 625032b8ab6SVijay Mahadevan 626032b8ab6SVijay Mahadevan PetscFunctionBegin; 627032b8ab6SVijay Mahadevan if (vmoab->new_tag && vmoab->tag) { 628efd17f3eSVijay Mahadevan /* Tag was created via a call to VecDuplicate, delete the underlying tag in MOAB */ 6299371c9d4SSatish Balay merr = vmoab->mbiface->tag_delete(vmoab->tag); 6309371c9d4SSatish Balay MBERRNM(merr); 631032b8ab6SVijay Mahadevan } 632032b8ab6SVijay Mahadevan delete vmoab->tag_range; 633c528d872SBarry Smith vmoab->tag = NULL; 634c528d872SBarry Smith vmoab->mbiface = NULL; 6359daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI 636c528d872SBarry Smith vmoab->pcomm = NULL; 6379daf19fdSVijay Mahadevan #endif 6389566063dSJacob Faibussowitsch PetscCall(PetscFree(vmoab)); 6393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 640032b8ab6SVijay Mahadevan } 641032b8ab6SVijay Mahadevan 642d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMGlobalToLocalBegin_Moab(DM dm, Vec g, InsertMode mode, Vec l) 643d71ae5a4SJacob Faibussowitsch { 644db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 645db66d124SVijay Mahadevan 646db66d124SVijay Mahadevan PetscFunctionBegin; 6479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE)); 6483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 649db66d124SVijay Mahadevan } 650db66d124SVijay Mahadevan 651d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMGlobalToLocalEnd_Moab(DM dm, Vec g, InsertMode mode, Vec l) 652d71ae5a4SJacob Faibussowitsch { 653db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 654db66d124SVijay Mahadevan 655db66d124SVijay Mahadevan PetscFunctionBegin; 6569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE)); 6573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 658db66d124SVijay Mahadevan } 659db66d124SVijay Mahadevan 660d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMLocalToGlobalBegin_Moab(DM dm, Vec l, InsertMode mode, Vec g) 661d71ae5a4SJacob Faibussowitsch { 662db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 663db66d124SVijay Mahadevan 664db66d124SVijay Mahadevan PetscFunctionBegin; 6659566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD)); 6663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 667db66d124SVijay Mahadevan } 668db66d124SVijay Mahadevan 669d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode DMLocalToGlobalEnd_Moab(DM dm, Vec l, InsertMode mode, Vec g) 670d71ae5a4SJacob Faibussowitsch { 671db66d124SVijay Mahadevan DM_Moab *dmmoab = (DM_Moab *)dm->data; 672db66d124SVijay Mahadevan 673db66d124SVijay Mahadevan PetscFunctionBegin; 6749566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD)); 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676db66d124SVijay Mahadevan } 677