xref: /petsc/src/dm/impls/moab/dmmbvec.cxx (revision a2b725a8db0d6bf6cc2a1c6df7dd8029aadfff6e)
1af0996ceSBarry Smith #include <petsc/private/dmmbimpl.h> /*I  "petscdmmoab.h"   I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
3032b8ab6SVijay Mahadevan 
4032b8ab6SVijay Mahadevan #include <petscdmmoab.h>
5032b8ab6SVijay Mahadevan #include <MBTagConventions.hpp>
6032b8ab6SVijay Mahadevan 
79c368985SVijay Mahadevan #define USE_NATIVE_PETSCVEC
89c368985SVijay Mahadevan 
9f6829af0SVijay Mahadevan /* declare some private DMMoab specific overrides */
10f6829af0SVijay Mahadevan static PetscErrorCode DMCreateVector_Moab_Private(DM dm,moab::Tag tag,const moab::Range* userrange,PetscBool is_global_vec,PetscBool destroy_tag,Vec *vec);
11f6829af0SVijay Mahadevan static PetscErrorCode DMVecUserDestroy_Moab(void *user);
12f6829af0SVijay Mahadevan static PetscErrorCode DMVecDuplicate_Moab(Vec x,Vec *y);
139daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
149daf19fdSVijay Mahadevan static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface,moab::ParallelComm *pcomm,char** tag_name);
159daf19fdSVijay Mahadevan #else
169daf19fdSVijay Mahadevan static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface,char** tag_name);
179daf19fdSVijay Mahadevan #endif
18032b8ab6SVijay Mahadevan 
19b8ecf6d3SVijay Mahadevan /*@C
20f6829af0SVijay Mahadevan   DMMoabCreateVector - Create a Vec from either an existing tag, or a specified tag size, and a range of entities
21f6829af0SVijay Mahadevan 
22f6829af0SVijay Mahadevan   Collective on MPI_Comm
23f6829af0SVijay Mahadevan 
24f6829af0SVijay Mahadevan   Input Parameter:
25b8ecf6d3SVijay Mahadevan + dm              - The DMMoab object being set
26f6829af0SVijay Mahadevan . tag             - If non-zero, block size will be taken from the tag size
27f6829af0SVijay Mahadevan . range           - If non-empty, Vec corresponds to these entities, otherwise to the entities set on the DMMoab
28f6829af0SVijay Mahadevan . is_global_vec   - If true, this is a local representation of the Vec (including ghosts in parallel), otherwise a truly parallel one
29*a2b725a8SWilliam Gropp - destroy_tag     - If true, MOAB tag is destroyed with Vec, otherwise it is left on MOAB
30f6829af0SVijay Mahadevan 
31f6829af0SVijay Mahadevan   Output Parameter:
32f6829af0SVijay Mahadevan . vec             - The created vector
33f6829af0SVijay Mahadevan 
34f6829af0SVijay Mahadevan   Level: beginner
35f6829af0SVijay Mahadevan 
36b8ecf6d3SVijay Mahadevan .keywords: Vec, create
37b8ecf6d3SVijay Mahadevan 
38b8ecf6d3SVijay Mahadevan .seealso: VecCreate()
39f6829af0SVijay Mahadevan @*/
40f6829af0SVijay Mahadevan PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag, const moab::Range* range, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec)
41f6829af0SVijay Mahadevan {
42f6829af0SVijay Mahadevan   PetscErrorCode     ierr;
43f6829af0SVijay Mahadevan 
44f6829af0SVijay Mahadevan   PetscFunctionBegin;
45f6829af0SVijay Mahadevan   if (!tag && (!range || range->empty())) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Both tag and range cannot be null.");
46f6829af0SVijay Mahadevan 
47f6829af0SVijay Mahadevan   ierr = DMCreateVector_Moab_Private(dm, tag, range, is_global_vec, destroy_tag, vec); CHKERRQ(ierr);
48f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
49f6829af0SVijay Mahadevan }
50f6829af0SVijay Mahadevan 
51f6829af0SVijay Mahadevan 
52b8ecf6d3SVijay Mahadevan /*@C
53f6829af0SVijay Mahadevan   DMMoabGetVecTag - Get the MOAB tag associated with this Vec
54f6829af0SVijay Mahadevan 
55f6829af0SVijay Mahadevan   Input Parameter:
56f6829af0SVijay Mahadevan . vec - Vec being queried
57f6829af0SVijay Mahadevan 
58f6829af0SVijay Mahadevan   Output Parameter:
59f6829af0SVijay Mahadevan . tag - Tag associated with this Vec. NULL if vec is a native PETSc Vec.
60f6829af0SVijay Mahadevan 
61f6829af0SVijay Mahadevan   Level: beginner
62f6829af0SVijay Mahadevan 
63b8ecf6d3SVijay Mahadevan .keywords: DMMoab, MOAB tag
64b8ecf6d3SVijay Mahadevan 
65b8ecf6d3SVijay Mahadevan .seealso: DMMoabCreateVector(), DMMoabGetVecRange()
66f6829af0SVijay Mahadevan @*/
67f6829af0SVijay Mahadevan PetscErrorCode DMMoabGetVecTag(Vec vec, moab::Tag *tag)
68f6829af0SVijay Mahadevan {
69f6829af0SVijay Mahadevan   PetscContainer  moabdata;
70f6829af0SVijay Mahadevan   Vec_MOAB        *vmoab;
71f6829af0SVijay Mahadevan   PetscErrorCode  ierr;
72f6829af0SVijay Mahadevan 
73f6829af0SVijay Mahadevan   PetscFunctionBegin;
74f6829af0SVijay Mahadevan   PetscValidPointer(tag, 2);
75f6829af0SVijay Mahadevan 
76f6829af0SVijay Mahadevan   /* Get the MOAB private data */
77f6829af0SVijay Mahadevan   ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
78f6829af0SVijay Mahadevan   ierr = PetscContainerGetPointer(moabdata, (void**) &vmoab); CHKERRQ(ierr);
79f6829af0SVijay Mahadevan 
80f6829af0SVijay Mahadevan   *tag = vmoab->tag;
81f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
82f6829af0SVijay Mahadevan }
83f6829af0SVijay Mahadevan 
84f6829af0SVijay Mahadevan 
85b8ecf6d3SVijay Mahadevan /*@C
86f6829af0SVijay Mahadevan   DMMoabGetVecRange - Get the MOAB entities associated with this Vec
87f6829af0SVijay Mahadevan 
88f6829af0SVijay Mahadevan   Input Parameter:
89f6829af0SVijay Mahadevan . vec   - Vec being queried
90f6829af0SVijay Mahadevan 
91f6829af0SVijay Mahadevan   Output Parameter:
92f6829af0SVijay Mahadevan . range - Entities associated with this Vec. NULL if vec is a native PETSc Vec.
93f6829af0SVijay Mahadevan 
94f6829af0SVijay Mahadevan   Level: beginner
95f6829af0SVijay Mahadevan 
96b8ecf6d3SVijay Mahadevan .keywords: DMMoab, MOAB range
97b8ecf6d3SVijay Mahadevan 
98b8ecf6d3SVijay Mahadevan .seealso: DMMoabCreateVector(), DMMoabGetVecTag()
99f6829af0SVijay Mahadevan @*/
100f6829af0SVijay Mahadevan PetscErrorCode DMMoabGetVecRange(Vec vec, moab::Range *range)
101f6829af0SVijay Mahadevan {
102f6829af0SVijay Mahadevan   PetscContainer  moabdata;
103f6829af0SVijay Mahadevan   Vec_MOAB        *vmoab;
104f6829af0SVijay Mahadevan   PetscErrorCode  ierr;
105f6829af0SVijay Mahadevan 
106f6829af0SVijay Mahadevan   PetscFunctionBegin;
107f6829af0SVijay Mahadevan   PetscValidPointer(range, 2);
108f6829af0SVijay Mahadevan 
109f6829af0SVijay Mahadevan   /* Get the MOAB private data handle */
110f6829af0SVijay Mahadevan   ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
111f6829af0SVijay Mahadevan   ierr = PetscContainerGetPointer(moabdata, (void**) &vmoab); CHKERRQ(ierr);
112f6829af0SVijay Mahadevan 
113f6829af0SVijay Mahadevan   *range = *vmoab->tag_range;
114f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
115f6829af0SVijay Mahadevan }
116f6829af0SVijay Mahadevan 
117f6829af0SVijay Mahadevan 
118b8ecf6d3SVijay Mahadevan /*@C
119f6829af0SVijay Mahadevan   DMMoabVecGetArray - Returns the writable direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities
120f6829af0SVijay Mahadevan 
121f6829af0SVijay Mahadevan   Collective on MPI_Comm
122f6829af0SVijay Mahadevan 
123f6829af0SVijay Mahadevan   Input Parameter:
124*a2b725a8SWilliam Gropp + dm              - The DMMoab object being set
125*a2b725a8SWilliam Gropp - vec             - The Vector whose underlying data is requested
126f6829af0SVijay Mahadevan 
127f6829af0SVijay Mahadevan   Output Parameter:
128f6829af0SVijay Mahadevan . array           - The local data array
129f6829af0SVijay Mahadevan 
130f6829af0SVijay Mahadevan   Level: intermediate
131f6829af0SVijay Mahadevan 
132f6829af0SVijay Mahadevan .keywords: MOAB, distributed array
133f6829af0SVijay Mahadevan 
134f6829af0SVijay Mahadevan .seealso: DMMoabVecRestoreArray(), DMMoabVecGetArrayRead(), DMMoabVecRestoreArrayRead()
135f6829af0SVijay Mahadevan @*/
136f6829af0SVijay Mahadevan PetscErrorCode  DMMoabVecGetArray(DM dm, Vec vec, void* array)
137f6829af0SVijay Mahadevan {
138f6829af0SVijay Mahadevan   DM_Moab        *dmmoab;
139f6829af0SVijay Mahadevan   moab::ErrorCode merr;
140f6829af0SVijay Mahadevan   PetscErrorCode  ierr;
141f6829af0SVijay Mahadevan   PetscInt        count, i, f;
142f6829af0SVijay Mahadevan   moab::Tag       vtag;
143f6829af0SVijay Mahadevan   PetscScalar     **varray;
144f6829af0SVijay Mahadevan   PetscScalar     *marray;
145f6829af0SVijay Mahadevan   PetscContainer  moabdata;
146f6829af0SVijay Mahadevan   Vec_MOAB        *vmoab, *xmoab;
147f6829af0SVijay Mahadevan 
148f6829af0SVijay Mahadevan   PetscFunctionBegin;
149f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
150f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(vec, VEC_CLASSID, 2);
151f6829af0SVijay Mahadevan   PetscValidPointer(array, 3);
152f6829af0SVijay Mahadevan   dmmoab = (DM_Moab*)dm->data;
153f6829af0SVijay Mahadevan 
154f6829af0SVijay Mahadevan   /* Get the Vec_MOAB struct for the original vector */
155f6829af0SVijay Mahadevan   ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
156f6829af0SVijay Mahadevan   ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab); CHKERRQ(ierr);
157f6829af0SVijay Mahadevan 
158f6829af0SVijay Mahadevan   /* Get the real scalar array handle */
159f6829af0SVijay Mahadevan   varray = reinterpret_cast<PetscScalar**>(array);
160f6829af0SVijay Mahadevan 
161f6829af0SVijay Mahadevan   if (vmoab->is_native_vec) {
162f6829af0SVijay Mahadevan 
163f6829af0SVijay Mahadevan     /* get the local representation of the arrays from Vectors */
164f6829af0SVijay Mahadevan     ierr = DMGetLocalVector(dm, &vmoab->local); CHKERRQ(ierr);
165f6829af0SVijay Mahadevan     ierr = DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local); CHKERRQ(ierr);
166f6829af0SVijay Mahadevan     ierr = DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local); CHKERRQ(ierr);
167f6829af0SVijay Mahadevan 
168f6829af0SVijay Mahadevan     /* Get the Vec_MOAB struct for the original vector */
169f6829af0SVijay Mahadevan     ierr = PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
170f6829af0SVijay Mahadevan     ierr = PetscContainerGetPointer(moabdata, (void**)&xmoab); CHKERRQ(ierr);
171f6829af0SVijay Mahadevan 
172f6829af0SVijay Mahadevan     /* get the local representation of the arrays from Vectors */
173f6829af0SVijay Mahadevan     ierr = VecGhostGetLocalForm(vmoab->local, &xmoab->local); CHKERRQ(ierr);
174f6829af0SVijay Mahadevan     ierr = VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD); CHKERRQ(ierr);
175f6829af0SVijay Mahadevan     ierr = VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD); CHKERRQ(ierr);
176f6829af0SVijay Mahadevan 
177f6829af0SVijay Mahadevan     ierr = VecGetArray(xmoab->local, varray); CHKERRQ(ierr);
178f6829af0SVijay Mahadevan   }
179f6829af0SVijay Mahadevan   else {
180f6829af0SVijay Mahadevan 
181f6829af0SVijay Mahadevan     /* Get the MOAB private data */
182f6829af0SVijay Mahadevan     ierr = DMMoabGetVecTag(vec, &vtag); CHKERRQ(ierr);
183f6829af0SVijay Mahadevan 
1849daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
185f6829af0SVijay Mahadevan     /* exchange the data into ghost cells first */
186f6829af0SVijay Mahadevan     merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); MBERRNM(merr);
1879daf19fdSVijay Mahadevan #endif
188f6829af0SVijay Mahadevan 
1897ae5e5b6SVijay Mahadevan     ierr = PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray); CHKERRQ(ierr);
190f6829af0SVijay Mahadevan 
191f6829af0SVijay Mahadevan     /* Get the array data for local entities */
192f6829af0SVijay Mahadevan     merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void*&>(marray), false); MBERRNM(merr);
193f6829af0SVijay Mahadevan     if (count != dmmoab->nloc + dmmoab->nghost) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %D != %D.", count, dmmoab->nloc + dmmoab->nghost);
194f6829af0SVijay Mahadevan 
195f6829af0SVijay Mahadevan     i = 0;
196f6829af0SVijay Mahadevan     for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) {
197f6829af0SVijay Mahadevan       for (f = 0; f < dmmoab->numFields; f++, i++)
1983f1c6e43SVijay Mahadevan         (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart]*dmmoab->numFields + f] = marray[i];
1993f1c6e43SVijay Mahadevan       //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i];
200f6829af0SVijay Mahadevan     }
201f6829af0SVijay Mahadevan   }
202f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
203f6829af0SVijay Mahadevan }
204f6829af0SVijay Mahadevan 
205f6829af0SVijay Mahadevan 
206b8ecf6d3SVijay Mahadevan /*@C
207f6829af0SVijay Mahadevan   DMMoabVecRestoreArray - Restores the writable direct access array obtained via DMMoabVecGetArray
208f6829af0SVijay Mahadevan 
209f6829af0SVijay Mahadevan   Collective on MPI_Comm
210f6829af0SVijay Mahadevan 
211f6829af0SVijay Mahadevan   Input Parameter:
212f6829af0SVijay Mahadevan + dm              - The DMMoab object being set
213f6829af0SVijay Mahadevan . vec             - The Vector whose underlying data is requested
214*a2b725a8SWilliam Gropp - array           - The local data array
215f6829af0SVijay Mahadevan 
216f6829af0SVijay Mahadevan   Level: intermediate
217f6829af0SVijay Mahadevan 
218f6829af0SVijay Mahadevan .keywords: MOAB, distributed array
219f6829af0SVijay Mahadevan 
220f6829af0SVijay Mahadevan .seealso: DMMoabVecGetArray(), DMMoabVecGetArrayRead(), DMMoabVecRestoreArrayRead()
221f6829af0SVijay Mahadevan @*/
222f6829af0SVijay Mahadevan PetscErrorCode  DMMoabVecRestoreArray(DM dm, Vec vec, void* array)
223f6829af0SVijay Mahadevan {
224f6829af0SVijay Mahadevan   DM_Moab        *dmmoab;
225f6829af0SVijay Mahadevan   moab::ErrorCode merr;
226f6829af0SVijay Mahadevan   PetscErrorCode  ierr;
227f6829af0SVijay Mahadevan   moab::Tag       vtag;
228f6829af0SVijay Mahadevan   PetscInt        count, i, f;
229f6829af0SVijay Mahadevan   PetscScalar     **varray;
230f6829af0SVijay Mahadevan   PetscScalar     *marray;
231f6829af0SVijay Mahadevan   PetscContainer  moabdata;
232f6829af0SVijay Mahadevan   Vec_MOAB        *vmoab, *xmoab;
233f6829af0SVijay Mahadevan 
234f6829af0SVijay Mahadevan   PetscFunctionBegin;
235f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
236f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(vec, VEC_CLASSID, 2);
237f6829af0SVijay Mahadevan   PetscValidPointer(array, 3);
238f6829af0SVijay Mahadevan   dmmoab = (DM_Moab*)dm->data;
239f6829af0SVijay Mahadevan 
240f6829af0SVijay Mahadevan   /* Get the Vec_MOAB struct for the original vector */
241f6829af0SVijay Mahadevan   ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
242f6829af0SVijay Mahadevan   ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab); CHKERRQ(ierr);
243f6829af0SVijay Mahadevan 
244f6829af0SVijay Mahadevan   /* Get the real scalar array handle */
245f6829af0SVijay Mahadevan   varray = reinterpret_cast<PetscScalar**>(array);
246f6829af0SVijay Mahadevan 
247f6829af0SVijay Mahadevan   if (vmoab->is_native_vec) {
248f6829af0SVijay Mahadevan 
249f6829af0SVijay Mahadevan     /* Get the Vec_MOAB struct for the original vector */
250f6829af0SVijay Mahadevan     ierr = PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
251f6829af0SVijay Mahadevan     ierr = PetscContainerGetPointer(moabdata, (void**)&xmoab); CHKERRQ(ierr);
252f6829af0SVijay Mahadevan 
253f6829af0SVijay Mahadevan     /* get the local representation of the arrays from Vectors */
254f6829af0SVijay Mahadevan     ierr = VecRestoreArray(xmoab->local, varray); CHKERRQ(ierr);
255f6829af0SVijay Mahadevan     ierr = VecGhostUpdateBegin(vmoab->local, ADD_VALUES, SCATTER_REVERSE); CHKERRQ(ierr);
256f6829af0SVijay Mahadevan     ierr = VecGhostUpdateEnd(vmoab->local, ADD_VALUES, SCATTER_REVERSE); CHKERRQ(ierr);
257f6829af0SVijay Mahadevan     ierr = VecGhostRestoreLocalForm(vmoab->local, &xmoab->local); CHKERRQ(ierr);
258f6829af0SVijay Mahadevan 
259f6829af0SVijay Mahadevan     /* restore local pieces */
260f6829af0SVijay Mahadevan     ierr = DMLocalToGlobalBegin(dm, vmoab->local, INSERT_VALUES, vec); CHKERRQ(ierr);
261f6829af0SVijay Mahadevan     ierr = DMLocalToGlobalEnd(dm, vmoab->local, INSERT_VALUES, vec); CHKERRQ(ierr);
262f6829af0SVijay Mahadevan     ierr = DMRestoreLocalVector(dm, &vmoab->local); CHKERRQ(ierr);
263f6829af0SVijay Mahadevan   }
264f6829af0SVijay Mahadevan   else {
265f6829af0SVijay Mahadevan 
266f6829af0SVijay Mahadevan     /* Get the MOAB private data */
267f6829af0SVijay Mahadevan     ierr = DMMoabGetVecTag(vec, &vtag); CHKERRQ(ierr);
268f6829af0SVijay Mahadevan 
269f6829af0SVijay Mahadevan     /* Get the array data for local entities */
270f6829af0SVijay Mahadevan     merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void*&>(marray), false); MBERRNM(merr);
271f6829af0SVijay Mahadevan     if (count != dmmoab->nloc + dmmoab->nghost) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %D != %D.", count, dmmoab->nloc + dmmoab->nghost);
272f6829af0SVijay Mahadevan 
273f6829af0SVijay Mahadevan     i = 0;
274f6829af0SVijay Mahadevan     for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) {
275f6829af0SVijay Mahadevan       for (f = 0; f < dmmoab->numFields; f++, i++)
2763f1c6e43SVijay Mahadevan         marray[i] = (*varray)[dmmoab->lidmap[(PetscInt) * iter - dmmoab->seqstart] * dmmoab->numFields + f];
2773f1c6e43SVijay Mahadevan       //marray[i] = (*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]];
278f6829af0SVijay Mahadevan     }
279f6829af0SVijay Mahadevan 
2809daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
281f6829af0SVijay Mahadevan     /* reduce the tags correctly -> should probably let the user choose how to reduce in the future
282f6829af0SVijay Mahadevan       For all FEM residual based assembly calculations, MPI_SUM should serve well */
283f6829af0SVijay Mahadevan     merr = dmmoab->pcomm->reduce_tags(vtag, MPI_SUM, *dmmoab->vlocal); MBERRV(dmmoab->mbiface, merr);
2849daf19fdSVijay Mahadevan #endif
285f6829af0SVijay Mahadevan     ierr = PetscFree(*varray); CHKERRQ(ierr);
286f6829af0SVijay Mahadevan   }
287f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
288f6829af0SVijay Mahadevan }
289f6829af0SVijay Mahadevan 
290b8ecf6d3SVijay Mahadevan /*@C
291f6829af0SVijay Mahadevan   DMMoabVecGetArrayRead - Returns the read-only direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities
292f6829af0SVijay Mahadevan 
293f6829af0SVijay Mahadevan   Collective on MPI_Comm
294f6829af0SVijay Mahadevan 
295f6829af0SVijay Mahadevan   Input Parameter:
296f6829af0SVijay Mahadevan + dm              - The DMMoab object being set
297*a2b725a8SWilliam Gropp - vec             - The Vector whose underlying data is requested
298f6829af0SVijay Mahadevan 
299f6829af0SVijay Mahadevan   Output Parameter:
300f6829af0SVijay Mahadevan . array           - The local data array
301f6829af0SVijay Mahadevan 
302f6829af0SVijay Mahadevan   Level: intermediate
303f6829af0SVijay Mahadevan 
304f6829af0SVijay Mahadevan .keywords: MOAB, distributed array
305f6829af0SVijay Mahadevan 
306f6829af0SVijay Mahadevan .seealso: DMMoabVecRestoreArrayRead(), DMMoabVecGetArray(), DMMoabVecRestoreArray()
307f6829af0SVijay Mahadevan @*/
308f6829af0SVijay Mahadevan PetscErrorCode  DMMoabVecGetArrayRead(DM dm, Vec vec, void* array)
309f6829af0SVijay Mahadevan {
310f6829af0SVijay Mahadevan   DM_Moab        *dmmoab;
311f6829af0SVijay Mahadevan   moab::ErrorCode merr;
312f6829af0SVijay Mahadevan   PetscErrorCode  ierr;
313f6829af0SVijay Mahadevan   PetscInt        count, i, f;
314f6829af0SVijay Mahadevan   moab::Tag       vtag;
315f6829af0SVijay Mahadevan   PetscScalar     **varray;
316f6829af0SVijay Mahadevan   PetscScalar     *marray;
317f6829af0SVijay Mahadevan   PetscContainer  moabdata;
318f6829af0SVijay Mahadevan   Vec_MOAB        *vmoab, *xmoab;
319f6829af0SVijay Mahadevan 
320f6829af0SVijay Mahadevan   PetscFunctionBegin;
321f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
322f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(vec, VEC_CLASSID, 2);
323f6829af0SVijay Mahadevan   PetscValidPointer(array, 3);
324f6829af0SVijay Mahadevan   dmmoab = (DM_Moab*)dm->data;
325f6829af0SVijay Mahadevan 
326f6829af0SVijay Mahadevan   /* Get the Vec_MOAB struct for the original vector */
327f6829af0SVijay Mahadevan   ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
328f6829af0SVijay Mahadevan   ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab); CHKERRQ(ierr);
329f6829af0SVijay Mahadevan 
330f6829af0SVijay Mahadevan   /* Get the real scalar array handle */
331f6829af0SVijay Mahadevan   varray = reinterpret_cast<PetscScalar**>(array);
332f6829af0SVijay Mahadevan 
333f6829af0SVijay Mahadevan   if (vmoab->is_native_vec) {
334f6829af0SVijay Mahadevan     /* get the local representation of the arrays from Vectors */
335f6829af0SVijay Mahadevan     ierr = DMGetLocalVector(dm, &vmoab->local); CHKERRQ(ierr);
336f6829af0SVijay Mahadevan     ierr = DMGlobalToLocalBegin(dm, vec, INSERT_VALUES, vmoab->local); CHKERRQ(ierr);
337f6829af0SVijay Mahadevan     ierr = DMGlobalToLocalEnd(dm, vec, INSERT_VALUES, vmoab->local); CHKERRQ(ierr);
338f6829af0SVijay Mahadevan 
339f6829af0SVijay Mahadevan     /* Get the Vec_MOAB struct for the original vector */
340f6829af0SVijay Mahadevan     ierr = PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
341f6829af0SVijay Mahadevan     ierr = PetscContainerGetPointer(moabdata, (void**)&xmoab); CHKERRQ(ierr);
342f6829af0SVijay Mahadevan 
343f6829af0SVijay Mahadevan     /* get the local representation of the arrays from Vectors */
344f6829af0SVijay Mahadevan     ierr = VecGhostGetLocalForm(vmoab->local, &xmoab->local); CHKERRQ(ierr);
345f6829af0SVijay Mahadevan     ierr = VecGhostUpdateBegin(vmoab->local, INSERT_VALUES, SCATTER_FORWARD); CHKERRQ(ierr);
346f6829af0SVijay Mahadevan     ierr = VecGhostUpdateEnd(vmoab->local, INSERT_VALUES, SCATTER_FORWARD); CHKERRQ(ierr);
347f6829af0SVijay Mahadevan     ierr = VecGetArray(xmoab->local, varray); CHKERRQ(ierr);
348f6829af0SVijay Mahadevan   }
349f6829af0SVijay Mahadevan   else {
350f6829af0SVijay Mahadevan     /* Get the MOAB private data */
351f6829af0SVijay Mahadevan     ierr = DMMoabGetVecTag(vec, &vtag); CHKERRQ(ierr);
352f6829af0SVijay Mahadevan 
3539daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
354f6829af0SVijay Mahadevan     /* exchange the data into ghost cells first */
355f6829af0SVijay Mahadevan     merr = dmmoab->pcomm->exchange_tags(vtag, *dmmoab->vlocal); MBERRNM(merr);
3569daf19fdSVijay Mahadevan #endif
3577ae5e5b6SVijay Mahadevan     ierr = PetscMalloc1((dmmoab->nloc + dmmoab->nghost) * dmmoab->numFields, varray); CHKERRQ(ierr);
358f6829af0SVijay Mahadevan 
359f6829af0SVijay Mahadevan     /* Get the array data for local entities */
360f6829af0SVijay Mahadevan     merr = dmmoab->mbiface->tag_iterate(vtag, dmmoab->vlocal->begin(), dmmoab->vlocal->end(), count, reinterpret_cast<void*&>(marray), false); MBERRNM(merr);
361f6829af0SVijay Mahadevan     if (count != dmmoab->nloc + dmmoab->nghost) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %D != %D.", count, dmmoab->nloc + dmmoab->nghost);
362f6829af0SVijay Mahadevan 
363f6829af0SVijay Mahadevan     i = 0;
364f6829af0SVijay Mahadevan     for (moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) {
365f6829af0SVijay Mahadevan       for (f = 0; f < dmmoab->numFields; f++, i++)
3663f1c6e43SVijay Mahadevan         (*varray)[dmmoab->lidmap[(PetscInt)*iter - dmmoab->seqstart]*dmmoab->numFields + f] = marray[i];
3673f1c6e43SVijay Mahadevan       //(*varray)[dmmoab->llmap[dmmoab->lidmap[((PetscInt)*iter-dmmoab->seqstart)]*dmmoab->numFields+f]]=marray[i];
368f6829af0SVijay Mahadevan     }
369f6829af0SVijay Mahadevan   }
370f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
371f6829af0SVijay Mahadevan }
372f6829af0SVijay Mahadevan 
373f6829af0SVijay Mahadevan 
374b8ecf6d3SVijay Mahadevan /*@C
375f6829af0SVijay Mahadevan   DMMoabVecRestoreArray - Restores the read-only direct access array obtained via DMMoabVecGetArray
376f6829af0SVijay Mahadevan 
377f6829af0SVijay Mahadevan   Collective on MPI_Comm
378f6829af0SVijay Mahadevan 
379f6829af0SVijay Mahadevan   Input Parameter:
380f6829af0SVijay Mahadevan + dm              - The DMMoab object being set
381f6829af0SVijay Mahadevan . vec             - The Vector whose underlying data is requested
382*a2b725a8SWilliam Gropp - array           - The local data array
383f6829af0SVijay Mahadevan 
384f6829af0SVijay Mahadevan   Level: intermediate
385f6829af0SVijay Mahadevan 
386f6829af0SVijay Mahadevan .keywords: MOAB, distributed array
387f6829af0SVijay Mahadevan 
388f6829af0SVijay Mahadevan .seealso: DMMoabVecGetArrayRead(), DMMoabVecGetArray(), DMMoabVecRestoreArray()
389f6829af0SVijay Mahadevan @*/
390f6829af0SVijay Mahadevan PetscErrorCode  DMMoabVecRestoreArrayRead(DM dm, Vec vec, void* array)
391f6829af0SVijay Mahadevan {
392f6829af0SVijay Mahadevan   PetscErrorCode  ierr;
393f6829af0SVijay Mahadevan   PetscScalar     **varray;
394f6829af0SVijay Mahadevan   PetscContainer  moabdata;
395f6829af0SVijay Mahadevan   Vec_MOAB        *vmoab, *xmoab;
396f6829af0SVijay Mahadevan 
397f6829af0SVijay Mahadevan   PetscFunctionBegin;
398f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
399f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(vec, VEC_CLASSID, 2);
400f6829af0SVijay Mahadevan   PetscValidPointer(array, 3);
401f6829af0SVijay Mahadevan 
402f6829af0SVijay Mahadevan   /* Get the Vec_MOAB struct for the original vector */
403f6829af0SVijay Mahadevan   ierr = PetscObjectQuery((PetscObject)vec, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
404f6829af0SVijay Mahadevan   ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab); CHKERRQ(ierr);
405f6829af0SVijay Mahadevan 
406f6829af0SVijay Mahadevan   /* Get the real scalar array handle */
407f6829af0SVijay Mahadevan   varray = reinterpret_cast<PetscScalar**>(array);
408f6829af0SVijay Mahadevan 
409f6829af0SVijay Mahadevan   if (vmoab->is_native_vec) {
410f6829af0SVijay Mahadevan     /* Get the Vec_MOAB struct for the original vector */
411f6829af0SVijay Mahadevan     ierr = PetscObjectQuery((PetscObject)vmoab->local, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
412f6829af0SVijay Mahadevan     ierr = PetscContainerGetPointer(moabdata, (void**)&xmoab); CHKERRQ(ierr);
413f6829af0SVijay Mahadevan 
414f6829af0SVijay Mahadevan     /* restore the local representation of the arrays from Vectors */
415f6829af0SVijay Mahadevan     ierr = VecRestoreArray(xmoab->local, varray); CHKERRQ(ierr);
416f6829af0SVijay Mahadevan     ierr = VecGhostRestoreLocalForm(vmoab->local, &xmoab->local); CHKERRQ(ierr);
417f6829af0SVijay Mahadevan 
418f6829af0SVijay Mahadevan     /* restore local pieces */
419f6829af0SVijay Mahadevan     ierr = DMRestoreLocalVector(dm, &vmoab->local); CHKERRQ(ierr);
420f6829af0SVijay Mahadevan   }
421f6829af0SVijay Mahadevan   else {
422f6829af0SVijay Mahadevan     /* Nothing to do but just free the memory allocated before */
423f6829af0SVijay Mahadevan     ierr = PetscFree(*varray); CHKERRQ(ierr);
424f6829af0SVijay Mahadevan 
425f6829af0SVijay Mahadevan   }
426f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
427f6829af0SVijay Mahadevan }
428f6829af0SVijay Mahadevan 
429f6829af0SVijay Mahadevan 
430f6829af0SVijay Mahadevan PetscErrorCode DMCreateVector_Moab_Private(DM dm, moab::Tag tag, const moab::Range* userrange, PetscBool is_global_vec, PetscBool destroy_tag, Vec *vec)
431032b8ab6SVijay Mahadevan {
432032b8ab6SVijay Mahadevan   PetscErrorCode    ierr;
433032b8ab6SVijay Mahadevan   moab::ErrorCode   merr;
434032b8ab6SVijay Mahadevan   PetscBool         is_newtag;
435351b8a77SVijay Mahadevan   const moab::Range *range;
436bb8f3634SVijay Mahadevan   PetscInt          count, lnative_vec, gnative_vec;
4379088682fSVijay Mahadevan   std::string       ttname;
438c4427235SVijay Mahadevan   PetscScalar       *data_ptr, *defaultvals;
439032b8ab6SVijay Mahadevan 
440db66d124SVijay Mahadevan   Vec_MOAB *vmoab;
441032b8ab6SVijay Mahadevan   DM_Moab *dmmoab = (DM_Moab*)dm->data;
4429daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
443032b8ab6SVijay Mahadevan   moab::ParallelComm *pcomm = dmmoab->pcomm;
4449daf19fdSVijay Mahadevan #endif
445032b8ab6SVijay Mahadevan   moab::Interface *mbiface = dmmoab->mbiface;
446032b8ab6SVijay Mahadevan 
447032b8ab6SVijay Mahadevan   PetscFunctionBegin;
448d1839e75SVijay Mahadevan   if (sizeof(PetscReal) != sizeof(PetscScalar)) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "MOAB tags only support Real types (Complex-type unsupported)");
449032b8ab6SVijay Mahadevan   if (!userrange) range = dmmoab->vowned;
450032b8ab6SVijay Mahadevan   else range = userrange;
451db66d124SVijay Mahadevan   if (!range) SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "Input range cannot be empty or call DMSetUp first.");
452032b8ab6SVijay Mahadevan 
4533ac71f70SVijay Mahadevan #ifndef USE_NATIVE_PETSCVEC
454bb8f3634SVijay Mahadevan   /* If the tag data is in a single sequence, use PETSc native vector since tag_iterate isn't useful anymore */
455bb8f3634SVijay Mahadevan   lnative_vec = (range->psize() - 1);
4563ac71f70SVijay Mahadevan #else
4573ac71f70SVijay Mahadevan   lnative_vec = 1; /* NOTE: Testing PETSc vector: will force to create native vector all the time */
4586465f021SVijay Mahadevan //  lnative_vec=0; /* NOTE: Testing MOAB vector: will force to create MOAB tag_iterate based vector all the time */
459f6829af0SVijay Mahadevan #endif
4603ac71f70SVijay Mahadevan 
4619daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
4629daf19fdSVijay Mahadevan   ierr = MPIU_Allreduce(&lnative_vec, &gnative_vec, 1, MPI_INT, MPI_MAX, (((PetscObject)dm)->comm)); CHKERRQ(ierr);
4639daf19fdSVijay Mahadevan #else
4649daf19fdSVijay Mahadevan   gnative_vec = lnative_vec;
4659daf19fdSVijay Mahadevan #endif
466bb8f3634SVijay Mahadevan 
467bb8f3634SVijay Mahadevan   /* Create the MOAB internal data object */
468f90c3b0eSVijay Mahadevan   ierr = PetscNew(&vmoab); CHKERRQ(ierr);
469bb8f3634SVijay Mahadevan   vmoab->is_native_vec = (gnative_vec > 0 ? PETSC_TRUE : PETSC_FALSE);
470bb8f3634SVijay Mahadevan 
471bb8f3634SVijay Mahadevan   if (!vmoab->is_native_vec) {
4723ac71f70SVijay Mahadevan     merr = moab::MB_SUCCESS;
47364e1c140SVijay Mahadevan     if (tag != 0) merr = mbiface->tag_get_name(tag, ttname);
47464e1c140SVijay Mahadevan     if (!ttname.length() || merr != moab::MB_SUCCESS) {
475db66d124SVijay Mahadevan       /* get the new name for the anonymous MOABVec -> the tag_name will be destroyed along with Tag */
476c528d872SBarry Smith       char *tag_name = NULL;
4779daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
4789daf19fdSVijay Mahadevan       ierr = DMVecCreateTagName_Moab_Private(mbiface,pcomm,&tag_name); CHKERRQ(ierr);
4799daf19fdSVijay Mahadevan #else
4809daf19fdSVijay Mahadevan       ierr = DMVecCreateTagName_Moab_Private(mbiface,&tag_name); CHKERRQ(ierr);
4819daf19fdSVijay Mahadevan #endif
482032b8ab6SVijay Mahadevan       is_newtag = PETSC_TRUE;
483032b8ab6SVijay Mahadevan 
484db66d124SVijay Mahadevan       /* Create the default value for the tag (all zeros) */
4857ae5e5b6SVijay Mahadevan       ierr = PetscCalloc1(dmmoab->numFields, &defaultvals); CHKERRQ(ierr);
486032b8ab6SVijay Mahadevan 
487db66d124SVijay Mahadevan       /* Create the tag */
488d1839e75SVijay Mahadevan       merr = mbiface->tag_get_handle(tag_name, dmmoab->numFields, moab::MB_TYPE_DOUBLE, tag,
489c4427235SVijay Mahadevan                                      moab::MB_TAG_DENSE | moab::MB_TAG_CREAT, defaultvals); MBERRNM(merr);
490032b8ab6SVijay Mahadevan       ierr = PetscFree(tag_name); CHKERRQ(ierr);
491c4427235SVijay Mahadevan       ierr = PetscFree(defaultvals); CHKERRQ(ierr);
492032b8ab6SVijay Mahadevan     }
493032b8ab6SVijay Mahadevan     else {
494db66d124SVijay Mahadevan       /* Make sure the tag data is of type "double" */
495032b8ab6SVijay Mahadevan       moab::DataType tag_type;
496032b8ab6SVijay Mahadevan       merr = mbiface->tag_get_data_type(tag, tag_type); MBERRNM(merr);
497032b8ab6SVijay Mahadevan       if (tag_type != moab::MB_TYPE_DOUBLE) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Tag data type must be MB_TYPE_DOUBLE");
498032b8ab6SVijay Mahadevan       is_newtag = destroy_tag;
499032b8ab6SVijay Mahadevan     }
500032b8ab6SVijay Mahadevan 
501032b8ab6SVijay Mahadevan     vmoab->tag = tag;
502bb8f3634SVijay Mahadevan     vmoab->new_tag = is_newtag;
503bb8f3634SVijay Mahadevan   }
504032b8ab6SVijay Mahadevan   vmoab->mbiface = mbiface;
5059daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
506032b8ab6SVijay Mahadevan   vmoab->pcomm = pcomm;
5079daf19fdSVijay Mahadevan #endif
508032b8ab6SVijay Mahadevan   vmoab->is_global_vec = is_global_vec;
509bb8f3634SVijay Mahadevan   vmoab->tag_size = dmmoab->bs;
510032b8ab6SVijay Mahadevan 
511bb8f3634SVijay Mahadevan   if (vmoab->is_native_vec) {
512fc418013SVijay Mahadevan 
513bb8f3634SVijay Mahadevan     /* Create the PETSc Vector directly and attach our functions accordingly */
514bb8f3634SVijay Mahadevan     if (!is_global_vec) {
515bb8f3634SVijay Mahadevan       /* This is an MPI Vector with ghosted padding */
5169daf19fdSVijay Mahadevan       ierr = VecCreateGhostBlock((((PetscObject)dm)->comm), dmmoab->bs, dmmoab->numFields * dmmoab->nloc,
517addae81cSVijay Mahadevan                                  dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], vec); CHKERRQ(ierr);
518bb8f3634SVijay Mahadevan     }
519bb8f3634SVijay Mahadevan     else {
520bb8f3634SVijay Mahadevan       /* This is an MPI/SEQ Vector */
5219daf19fdSVijay Mahadevan       ierr = VecCreate((((PetscObject)dm)->comm), vec); CHKERRQ(ierr);
522addae81cSVijay Mahadevan       ierr = VecSetSizes(*vec, dmmoab->numFields * dmmoab->nloc, PETSC_DECIDE); CHKERRQ(ierr);
523bb8f3634SVijay Mahadevan       ierr = VecSetBlockSize(*vec, dmmoab->bs); CHKERRQ(ierr);
524bb8f3634SVijay Mahadevan       ierr = VecSetType(*vec, VECMPI); CHKERRQ(ierr);
525bb8f3634SVijay Mahadevan     }
526bb8f3634SVijay Mahadevan   }
527bb8f3634SVijay Mahadevan   else {
528db66d124SVijay Mahadevan     /* Call tag_iterate. This will cause MOAB to allocate memory for the
529db66d124SVijay Mahadevan        tag data if it hasn't already happened */
530032b8ab6SVijay Mahadevan     merr = mbiface->tag_iterate(tag, range->begin(), range->end(), count, (void*&)data_ptr); MBERRNM(merr);
531032b8ab6SVijay Mahadevan 
532bb8f3634SVijay Mahadevan     /* set the reference for vector range */
533bb8f3634SVijay Mahadevan     vmoab->tag_range = new moab::Range(*range);
534addae81cSVijay Mahadevan     merr = mbiface->tag_get_length(tag, dmmoab->numFields); MBERRNM(merr);
535032b8ab6SVijay Mahadevan 
536db66d124SVijay Mahadevan     /* Create the PETSc Vector
537db66d124SVijay Mahadevan       Query MOAB mesh to check if there are any ghosted entities
538032b8ab6SVijay Mahadevan         -> if we do, create a ghosted vector to map correctly to the same layout
539032b8ab6SVijay Mahadevan         -> else, create a non-ghosted parallel vector */
540bb8f3634SVijay Mahadevan     if (!is_global_vec) {
541db66d124SVijay Mahadevan       /* This is an MPI Vector with ghosted padding */
5429daf19fdSVijay Mahadevan       ierr = VecCreateGhostBlockWithArray((((PetscObject)dm)->comm), dmmoab->bs, dmmoab->numFields * dmmoab->nloc,
543addae81cSVijay Mahadevan                                           dmmoab->numFields * dmmoab->n, dmmoab->nghost, &dmmoab->gsindices[dmmoab->nloc], data_ptr, vec); CHKERRQ(ierr);
544032b8ab6SVijay Mahadevan     }
545032b8ab6SVijay Mahadevan     else {
546bb8f3634SVijay Mahadevan       /* This is an MPI Vector without ghosted padding */
5479daf19fdSVijay Mahadevan       ierr = VecCreateMPIWithArray((((PetscObject)dm)->comm), dmmoab->bs, dmmoab->numFields * range->size(),
548bb8f3634SVijay Mahadevan                                    PETSC_DECIDE, data_ptr, vec); CHKERRQ(ierr);
549032b8ab6SVijay Mahadevan     }
550bb8f3634SVijay Mahadevan   }
551bb8f3634SVijay Mahadevan   ierr = VecSetFromOptions(*vec); CHKERRQ(ierr);
552032b8ab6SVijay Mahadevan 
553f6829af0SVijay Mahadevan   /* create a container and store the internal MOAB data for faster access based on Entities etc */
554032b8ab6SVijay Mahadevan   PetscContainer moabdata;
555bb8f3634SVijay Mahadevan   ierr = PetscContainerCreate(PETSC_COMM_WORLD, &moabdata); CHKERRQ(ierr);
556032b8ab6SVijay Mahadevan   ierr = PetscContainerSetPointer(moabdata, vmoab); CHKERRQ(ierr);
557f6829af0SVijay Mahadevan   ierr = PetscContainerSetUserDestroy(moabdata, DMVecUserDestroy_Moab); CHKERRQ(ierr);
558032b8ab6SVijay Mahadevan   ierr = PetscObjectCompose((PetscObject) * vec, "MOABData", (PetscObject)moabdata); CHKERRQ(ierr);
559f6829af0SVijay Mahadevan   (*vec)->ops->duplicate = DMVecDuplicate_Moab;
560032b8ab6SVijay Mahadevan   ierr = PetscContainerDestroy(&moabdata); CHKERRQ(ierr);
561032b8ab6SVijay Mahadevan 
562db66d124SVijay Mahadevan   /* Vector created, manually set local to global mapping */
5636d9eb265SVijay Mahadevan   if (dmmoab->ltog_map) {
564bb8f3634SVijay Mahadevan     ierr = VecSetLocalToGlobalMapping(*vec, dmmoab->ltog_map); CHKERRQ(ierr);
5656d9eb265SVijay Mahadevan   }
566032b8ab6SVijay Mahadevan 
567032b8ab6SVijay Mahadevan   /* set the DM reference to the vector */
568032b8ab6SVijay Mahadevan   ierr = VecSetDM(*vec, dm); CHKERRQ(ierr);
569032b8ab6SVijay Mahadevan   PetscFunctionReturn(0);
570032b8ab6SVijay Mahadevan }
571032b8ab6SVijay Mahadevan 
572032b8ab6SVijay Mahadevan 
573f6829af0SVijay Mahadevan /*  DMVecCreateTagName_Moab_Private
574032b8ab6SVijay Mahadevan  *
575032b8ab6SVijay Mahadevan  *  Creates a unique tag name that will be shared across processes. If
576032b8ab6SVijay Mahadevan  *  pcomm is NULL, then this is a serial vector. A unique tag name
577032b8ab6SVijay Mahadevan  *  will be returned in tag_name in either case.
578032b8ab6SVijay Mahadevan  *
579032b8ab6SVijay Mahadevan  *  The tag names have the format _PETSC_VEC_N where N is some integer.
580032b8ab6SVijay Mahadevan  *
581032b8ab6SVijay Mahadevan  *  NOTE: The tag_name is allocated in this routine; The user needs to free
582032b8ab6SVijay Mahadevan  *        the character array.
583032b8ab6SVijay Mahadevan  */
5849daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
5859daf19fdSVijay Mahadevan PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, moab::ParallelComm *pcomm, char** tag_name)
5869daf19fdSVijay Mahadevan #else
5879daf19fdSVijay Mahadevan PetscErrorCode DMVecCreateTagName_Moab_Private(moab::Interface *mbiface, char** tag_name)
5889daf19fdSVijay Mahadevan #endif
589032b8ab6SVijay Mahadevan {
590032b8ab6SVijay Mahadevan   moab::ErrorCode mberr;
591032b8ab6SVijay Mahadevan   PetscErrorCode  ierr;
592032b8ab6SVijay Mahadevan   PetscInt        n, global_n;
593032b8ab6SVijay Mahadevan   moab::Tag indexTag;
594032b8ab6SVijay Mahadevan 
595032b8ab6SVijay Mahadevan   PetscFunctionBegin;
596032b8ab6SVijay Mahadevan   const char*       PVEC_PREFIX      = "__PETSC_VEC_";
59795dccacaSBarry Smith   ierr = PetscMalloc1(PETSC_MAX_PATH_LEN, tag_name); CHKERRQ(ierr);
598032b8ab6SVijay Mahadevan 
599032b8ab6SVijay Mahadevan   moab::EntityHandle rootset = mbiface->get_root_set();
600032b8ab6SVijay Mahadevan 
6019daf19fdSVijay Mahadevan   /* Check to see if there are any PETSc vectors defined */
602efd17f3eSVijay Mahadevan   /* Create a tag in MOAB mesh to index and keep track of number of Petsc vec tags */
603032b8ab6SVijay Mahadevan   mberr = mbiface->tag_get_handle("__PETSC_VECS__", 1, moab::MB_TYPE_INTEGER, indexTag,
604032b8ab6SVijay Mahadevan                                   moab::MB_TAG_SPARSE | moab::MB_TAG_CREAT, 0); MBERRNM(mberr);
605032b8ab6SVijay Mahadevan   mberr = mbiface->tag_get_data(indexTag, &rootset, 1, &n);
606032b8ab6SVijay Mahadevan   if (mberr == moab::MB_TAG_NOT_FOUND) n = 0; /* this is the first temporary vector */
607032b8ab6SVijay Mahadevan   else MBERRNM(mberr);
608032b8ab6SVijay Mahadevan 
609032b8ab6SVijay Mahadevan   /* increment the new value of n */
610032b8ab6SVijay Mahadevan   ++n;
611032b8ab6SVijay Mahadevan 
6129daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
613efd17f3eSVijay Mahadevan   /* Make sure that n is consistent across all processes */
614b2566f29SBarry Smith   ierr = MPIU_Allreduce(&n, &global_n, 1, MPI_INT, MPI_MAX, pcomm->comm()); CHKERRQ(ierr);
6159daf19fdSVijay Mahadevan #else
6169daf19fdSVijay Mahadevan   global_n = n;
6179daf19fdSVijay Mahadevan #endif
618032b8ab6SVijay Mahadevan 
619efd17f3eSVijay Mahadevan   /* Set the new name accordingly and return */
620032b8ab6SVijay Mahadevan   ierr = PetscSNPrintf(*tag_name, PETSC_MAX_PATH_LEN - 1, "%s_%D", PVEC_PREFIX, global_n); CHKERRQ(ierr);
621032b8ab6SVijay Mahadevan   mberr = mbiface->tag_set_data(indexTag, &rootset, 1, (const void*)&global_n); MBERRNM(mberr);
622032b8ab6SVijay Mahadevan   PetscFunctionReturn(0);
623032b8ab6SVijay Mahadevan }
624032b8ab6SVijay Mahadevan 
625032b8ab6SVijay Mahadevan 
626304006b3SVijay Mahadevan PETSC_EXTERN PetscErrorCode DMCreateGlobalVector_Moab(DM dm, Vec *gvec)
627f6829af0SVijay Mahadevan {
628f6829af0SVijay Mahadevan   PetscErrorCode  ierr;
629f6829af0SVijay Mahadevan   DM_Moab         *dmmoab = (DM_Moab*)dm->data;
630f6829af0SVijay Mahadevan 
631f6829af0SVijay Mahadevan   PetscFunctionBegin;
632f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
633f6829af0SVijay Mahadevan   PetscValidPointer(gvec,2);
634c528d872SBarry Smith   ierr = DMCreateVector_Moab_Private(dm,NULL,dmmoab->vowned,PETSC_TRUE,PETSC_TRUE,gvec);CHKERRQ(ierr);
635f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
636f6829af0SVijay Mahadevan }
637f6829af0SVijay Mahadevan 
638f6829af0SVijay Mahadevan 
639304006b3SVijay Mahadevan PETSC_EXTERN PetscErrorCode DMCreateLocalVector_Moab(DM dm, Vec *lvec)
640f6829af0SVijay Mahadevan {
641f6829af0SVijay Mahadevan   PetscErrorCode  ierr;
642f6829af0SVijay Mahadevan   DM_Moab         *dmmoab = (DM_Moab*)dm->data;
643f6829af0SVijay Mahadevan 
644f6829af0SVijay Mahadevan   PetscFunctionBegin;
645f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
646f6829af0SVijay Mahadevan   PetscValidPointer(lvec,2);
647c528d872SBarry Smith   ierr = DMCreateVector_Moab_Private(dm,NULL,dmmoab->vlocal,PETSC_FALSE,PETSC_TRUE,lvec);CHKERRQ(ierr);
648f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
649f6829af0SVijay Mahadevan }
650f6829af0SVijay Mahadevan 
651f6829af0SVijay Mahadevan 
652f6829af0SVijay Mahadevan PetscErrorCode DMVecDuplicate_Moab(Vec x, Vec *y)
653f6829af0SVijay Mahadevan {
654f6829af0SVijay Mahadevan   PetscErrorCode ierr;
655f6829af0SVijay Mahadevan   DM             dm;
656f6829af0SVijay Mahadevan   PetscContainer  moabdata;
657f6829af0SVijay Mahadevan   Vec_MOAB        *vmoab;
658f6829af0SVijay Mahadevan 
659f6829af0SVijay Mahadevan   PetscFunctionBegin;
660f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(x, VEC_CLASSID, 1);
661f6829af0SVijay Mahadevan   PetscValidPointer(y, 2);
662f6829af0SVijay Mahadevan 
663f6829af0SVijay Mahadevan   /* Get the Vec_MOAB struct for the original vector */
664f6829af0SVijay Mahadevan   ierr = PetscObjectQuery((PetscObject)x, "MOABData", (PetscObject*) &moabdata); CHKERRQ(ierr);
665f6829af0SVijay Mahadevan   ierr = PetscContainerGetPointer(moabdata, (void**)&vmoab); CHKERRQ(ierr);
666f6829af0SVijay Mahadevan 
667f6829af0SVijay Mahadevan   ierr = VecGetDM(x, &dm); CHKERRQ(ierr);
668f6829af0SVijay Mahadevan   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
669f6829af0SVijay Mahadevan 
670c528d872SBarry Smith   ierr = DMCreateVector_Moab_Private(dm,NULL,vmoab->tag_range,vmoab->is_global_vec,PETSC_TRUE,y);CHKERRQ(ierr);
671f6829af0SVijay Mahadevan   ierr = VecSetDM(*y, dm);CHKERRQ(ierr);
672f6829af0SVijay Mahadevan   PetscFunctionReturn(0);
673f6829af0SVijay Mahadevan }
674f6829af0SVijay Mahadevan 
675f6829af0SVijay Mahadevan 
676f6829af0SVijay Mahadevan PetscErrorCode DMVecUserDestroy_Moab(void *user)
677032b8ab6SVijay Mahadevan {
678efd17f3eSVijay Mahadevan   Vec_MOAB        *vmoab = (Vec_MOAB*)user;
679032b8ab6SVijay Mahadevan   PetscErrorCode  ierr;
680032b8ab6SVijay Mahadevan   moab::ErrorCode merr;
681032b8ab6SVijay Mahadevan 
682032b8ab6SVijay Mahadevan   PetscFunctionBegin;
683032b8ab6SVijay Mahadevan   if (vmoab->new_tag && vmoab->tag) {
684efd17f3eSVijay Mahadevan     /* Tag was created via a call to VecDuplicate, delete the underlying tag in MOAB */
685032b8ab6SVijay Mahadevan     merr = vmoab->mbiface->tag_delete(vmoab->tag); MBERRNM(merr);
686032b8ab6SVijay Mahadevan   }
687032b8ab6SVijay Mahadevan   delete vmoab->tag_range;
688c528d872SBarry Smith   vmoab->tag = NULL;
689c528d872SBarry Smith   vmoab->mbiface = NULL;
6909daf19fdSVijay Mahadevan #ifdef MOAB_HAVE_MPI
691c528d872SBarry Smith   vmoab->pcomm = NULL;
6929daf19fdSVijay Mahadevan #endif
693032b8ab6SVijay Mahadevan   ierr = PetscFree(vmoab); CHKERRQ(ierr);
694032b8ab6SVijay Mahadevan   PetscFunctionReturn(0);
695032b8ab6SVijay Mahadevan }
696032b8ab6SVijay Mahadevan 
697efd17f3eSVijay Mahadevan 
698304006b3SVijay Mahadevan PETSC_EXTERN PetscErrorCode  DMGlobalToLocalBegin_Moab(DM dm, Vec g, InsertMode mode, Vec l)
699db66d124SVijay Mahadevan {
700db66d124SVijay Mahadevan   PetscErrorCode    ierr;
701db66d124SVijay Mahadevan   DM_Moab         *dmmoab = (DM_Moab*)dm->data;
702db66d124SVijay Mahadevan 
703db66d124SVijay Mahadevan   PetscFunctionBegin;
7046d9eb265SVijay Mahadevan   ierr = VecScatterBegin(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE); CHKERRQ(ierr);
705db66d124SVijay Mahadevan   PetscFunctionReturn(0);
706db66d124SVijay Mahadevan }
707db66d124SVijay Mahadevan 
708db66d124SVijay Mahadevan 
709304006b3SVijay Mahadevan PETSC_EXTERN PetscErrorCode  DMGlobalToLocalEnd_Moab(DM dm, Vec g, InsertMode mode, Vec l)
710db66d124SVijay Mahadevan {
711db66d124SVijay Mahadevan   PetscErrorCode    ierr;
712db66d124SVijay Mahadevan   DM_Moab         *dmmoab = (DM_Moab*)dm->data;
713db66d124SVijay Mahadevan 
714db66d124SVijay Mahadevan   PetscFunctionBegin;
7156d9eb265SVijay Mahadevan   ierr = VecScatterEnd(dmmoab->ltog_sendrecv, g, l, mode, SCATTER_REVERSE); CHKERRQ(ierr);
716db66d124SVijay Mahadevan   PetscFunctionReturn(0);
717db66d124SVijay Mahadevan }
718db66d124SVijay Mahadevan 
719db66d124SVijay Mahadevan 
720304006b3SVijay Mahadevan PETSC_EXTERN PetscErrorCode  DMLocalToGlobalBegin_Moab(DM dm, Vec l, InsertMode mode, Vec g)
721db66d124SVijay Mahadevan {
722db66d124SVijay Mahadevan   PetscErrorCode    ierr;
723db66d124SVijay Mahadevan   DM_Moab         *dmmoab = (DM_Moab*)dm->data;
724db66d124SVijay Mahadevan 
725db66d124SVijay Mahadevan   PetscFunctionBegin;
7266d9eb265SVijay Mahadevan   ierr = VecScatterBegin(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD); CHKERRQ(ierr);
727db66d124SVijay Mahadevan   PetscFunctionReturn(0);
728db66d124SVijay Mahadevan }
729db66d124SVijay Mahadevan 
730db66d124SVijay Mahadevan 
731304006b3SVijay Mahadevan PETSC_EXTERN PetscErrorCode  DMLocalToGlobalEnd_Moab(DM dm, Vec l, InsertMode mode, Vec g)
732db66d124SVijay Mahadevan {
733db66d124SVijay Mahadevan   PetscErrorCode    ierr;
734db66d124SVijay Mahadevan   DM_Moab         *dmmoab = (DM_Moab*)dm->data;
735db66d124SVijay Mahadevan 
736db66d124SVijay Mahadevan   PetscFunctionBegin;
7376d9eb265SVijay Mahadevan   ierr = VecScatterEnd(dmmoab->ltog_sendrecv, l, g, mode, SCATTER_FORWARD); CHKERRQ(ierr);
738db66d124SVijay Mahadevan   PetscFunctionReturn(0);
739db66d124SVijay Mahadevan }
740db66d124SVijay Mahadevan 
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