xref: /petsc/src/dm/impls/plex/cgns/plexcgns2.c (revision ca328833e8a21f60f3bb6ef91b20e8821d82214d)
15f34f2dcSJed Brown #define PETSCDM_DLL
25f34f2dcSJed Brown #include <petsc/private/dmpleximpl.h> /*I   "petscdmplex.h"   I*/
35f34f2dcSJed Brown #include <petsc/private/viewercgnsimpl.h>
45f34f2dcSJed Brown 
55f34f2dcSJed Brown #include <pcgnslib.h>
65f34f2dcSJed Brown #include <cgns_io.h>
75f34f2dcSJed Brown 
85f34f2dcSJed Brown #if !defined(CGNS_ENUMT)
95f34f2dcSJed Brown   #define CGNS_ENUMT(a) a
105f34f2dcSJed Brown #endif
115f34f2dcSJed Brown #if !defined(CGNS_ENUMV)
125f34f2dcSJed Brown   #define CGNS_ENUMV(a) a
135f34f2dcSJed Brown #endif
145f34f2dcSJed Brown // Permute plex closure ordering to CGNS
15d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCGNSGetPermutation_Internal(DMPolytopeType cell_type, PetscInt closure_size, CGNS_ENUMT(ElementType_t) * element_type, const int **perm)
16d71ae5a4SJacob Faibussowitsch {
17472b9844SJames Wright   CGNS_ENUMT(ElementType_t) element_type_tmp;
18472b9844SJames Wright 
19472b9844SJames Wright   // https://cgns.github.io/CGNS_docs_current/sids/conv.html#unstructgrid
205f34f2dcSJed Brown   static const int bar_2[2]   = {0, 1};
215f34f2dcSJed Brown   static const int bar_3[3]   = {1, 2, 0};
225f34f2dcSJed Brown   static const int bar_4[4]   = {2, 3, 0, 1};
235f34f2dcSJed Brown   static const int bar_5[5]   = {3, 4, 0, 1, 2};
245f34f2dcSJed Brown   static const int tri_3[3]   = {0, 1, 2};
255f34f2dcSJed Brown   static const int tri_6[6]   = {3, 4, 5, 0, 1, 2};
265f34f2dcSJed Brown   static const int tri_10[10] = {7, 8, 9, 1, 2, 3, 4, 5, 6, 0};
275f34f2dcSJed Brown   static const int quad_4[4]  = {0, 1, 2, 3};
285f34f2dcSJed Brown   static const int quad_9[9]  = {
295f34f2dcSJed Brown     5, 6, 7, 8, // vertices
305f34f2dcSJed Brown     1, 2, 3, 4, // edges
315f34f2dcSJed Brown     0,          // center
325f34f2dcSJed Brown   };
335f34f2dcSJed Brown   static const int quad_16[] = {
345f34f2dcSJed Brown     12, 13, 14, 15,               // vertices
355f34f2dcSJed Brown     4,  5,  6,  7,  8, 9, 10, 11, // edges
365f34f2dcSJed Brown     0,  1,  3,  2,                // centers
375f34f2dcSJed Brown   };
385f34f2dcSJed Brown   static const int quad_25[] = {
395f34f2dcSJed Brown     21, 22, 23, 24,                                 // vertices
405f34f2dcSJed Brown     9,  10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, // edges
415f34f2dcSJed Brown     0,  1,  2,  5,  8,  7,  6,  3,  4,              // centers
425f34f2dcSJed Brown   };
435f34f2dcSJed Brown   static const int tetra_4[4]   = {0, 2, 1, 3};
445f34f2dcSJed Brown   static const int tetra_10[10] = {6, 8, 7, 9, 2, 1, 0, 3, 5, 4};
455f34f2dcSJed Brown   static const int tetra_20[20] = {
465f34f2dcSJed Brown     16, 18, 17, 19,         // vertices
475f34f2dcSJed Brown     9,  8,  7,  6,  5,  4,  // bottom edges
485f34f2dcSJed Brown     10, 11, 14, 15, 13, 12, // side edges
495f34f2dcSJed Brown     0,  2,  3,  1,          // faces
505f34f2dcSJed Brown   };
515f34f2dcSJed Brown   static const int hexa_8[8]   = {0, 3, 2, 1, 4, 5, 6, 7};
525f34f2dcSJed Brown   static const int hexa_27[27] = {
535f34f2dcSJed Brown     19, 22, 21, 20, 23, 24, 25, 26, // vertices
545f34f2dcSJed Brown     10, 9,  8,  7,                  // bottom edges
555f34f2dcSJed Brown     16, 15, 18, 17,                 // mid edges
565f34f2dcSJed Brown     11, 12, 13, 14,                 // top edges
575f34f2dcSJed Brown     1,  3,  5,  4,  6,  2,          // faces
585f34f2dcSJed Brown     0,                              // center
595f34f2dcSJed Brown   };
609371c9d4SSatish Balay   static const int hexa_64[64] = {
619371c9d4SSatish Balay     // debug with $PETSC_ARCH/tests/dm/impls/plex/tests/ex49 -dm_plex_simplex 0 -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -dm_coord_petscspace_degree 3
625f34f2dcSJed Brown     56, 59, 58, 57, 60, 61, 62, 63, // vertices
635f34f2dcSJed Brown     39, 38, 37, 36, 35, 34, 33, 32, // bottom edges
645f34f2dcSJed Brown     51, 50, 48, 49, 52, 53, 55, 54, // mid edges; Paraview needs edge 21-22 swapped with 23-24
655f34f2dcSJed Brown     40, 41, 42, 43, 44, 45, 46, 47, // top edges
665f34f2dcSJed Brown     8,  10, 11, 9,                  // z-minus face
675f34f2dcSJed Brown     16, 17, 19, 18,                 // y-minus face
685f34f2dcSJed Brown     24, 25, 27, 26,                 // x-plus face
695f34f2dcSJed Brown     20, 21, 23, 22,                 // y-plus face
705f34f2dcSJed Brown     30, 28, 29, 31,                 // x-minus face
715f34f2dcSJed Brown     12, 13, 15, 14,                 // z-plus face
725f34f2dcSJed Brown     0,  1,  3,  2,  4,  5,  7,  6,  // center
735f34f2dcSJed Brown   };
745f34f2dcSJed Brown 
755f34f2dcSJed Brown   PetscFunctionBegin;
76472b9844SJames Wright   element_type_tmp = CGNS_ENUMV(ElementTypeNull);
775f34f2dcSJed Brown   *perm            = NULL;
785f34f2dcSJed Brown   switch (cell_type) {
795f34f2dcSJed Brown   case DM_POLYTOPE_SEGMENT:
805f34f2dcSJed Brown     switch (closure_size) {
81d71ae5a4SJacob Faibussowitsch     case 2:
82472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(BAR_2);
83d71ae5a4SJacob Faibussowitsch       *perm            = bar_2;
84d71ae5a4SJacob Faibussowitsch     case 3:
85472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(BAR_3);
86d71ae5a4SJacob Faibussowitsch       *perm            = bar_3;
875f34f2dcSJed Brown     case 4:
88472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(BAR_4);
895f34f2dcSJed Brown       *perm            = bar_4;
905f34f2dcSJed Brown       break;
915f34f2dcSJed Brown     case 5:
92472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(BAR_5);
935f34f2dcSJed Brown       *perm            = bar_5;
945f34f2dcSJed Brown       break;
95d71ae5a4SJacob Faibussowitsch     default:
96d71ae5a4SJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
975f34f2dcSJed Brown     }
985f34f2dcSJed Brown     break;
995f34f2dcSJed Brown   case DM_POLYTOPE_TRIANGLE:
1005f34f2dcSJed Brown     switch (closure_size) {
1015f34f2dcSJed Brown     case 3:
102472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(TRI_3);
1035f34f2dcSJed Brown       *perm            = tri_3;
1045f34f2dcSJed Brown       break;
1055f34f2dcSJed Brown     case 6:
106472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(TRI_6);
1075f34f2dcSJed Brown       *perm            = tri_6;
1085f34f2dcSJed Brown       break;
1095f34f2dcSJed Brown     case 10:
110472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(TRI_10);
1115f34f2dcSJed Brown       *perm            = tri_10;
1125f34f2dcSJed Brown       break;
113d71ae5a4SJacob Faibussowitsch     default:
114d71ae5a4SJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
1155f34f2dcSJed Brown     }
1165f34f2dcSJed Brown     break;
1175f34f2dcSJed Brown   case DM_POLYTOPE_QUADRILATERAL:
1185f34f2dcSJed Brown     switch (closure_size) {
1195f34f2dcSJed Brown     case 4:
120472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(QUAD_4);
1215f34f2dcSJed Brown       *perm            = quad_4;
1225f34f2dcSJed Brown       break;
1235f34f2dcSJed Brown     case 9:
124472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(QUAD_9);
1255f34f2dcSJed Brown       *perm            = quad_9;
1265f34f2dcSJed Brown       break;
1275f34f2dcSJed Brown     case 16:
128472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(QUAD_16);
1295f34f2dcSJed Brown       *perm            = quad_16;
1305f34f2dcSJed Brown       break;
1315f34f2dcSJed Brown     case 25:
132472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(QUAD_25);
1335f34f2dcSJed Brown       *perm            = quad_25;
1345f34f2dcSJed Brown       break;
135d71ae5a4SJacob Faibussowitsch     default:
136d71ae5a4SJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
1375f34f2dcSJed Brown     }
1385f34f2dcSJed Brown     break;
1395f34f2dcSJed Brown   case DM_POLYTOPE_TETRAHEDRON:
1405f34f2dcSJed Brown     switch (closure_size) {
1415f34f2dcSJed Brown     case 4:
142472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(TETRA_4);
1435f34f2dcSJed Brown       *perm            = tetra_4;
1445f34f2dcSJed Brown       break;
1455f34f2dcSJed Brown     case 10:
146472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(TETRA_10);
1475f34f2dcSJed Brown       *perm            = tetra_10;
1485f34f2dcSJed Brown       break;
1495f34f2dcSJed Brown     case 20:
150472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(TETRA_20);
1515f34f2dcSJed Brown       *perm            = tetra_20;
1525f34f2dcSJed Brown       break;
153d71ae5a4SJacob Faibussowitsch     default:
154d71ae5a4SJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
1555f34f2dcSJed Brown     }
1565f34f2dcSJed Brown     break;
1575f34f2dcSJed Brown   case DM_POLYTOPE_HEXAHEDRON:
1585f34f2dcSJed Brown     switch (closure_size) {
1595f34f2dcSJed Brown     case 8:
160472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(HEXA_8);
1615f34f2dcSJed Brown       *perm            = hexa_8;
1625f34f2dcSJed Brown       break;
1635f34f2dcSJed Brown     case 27:
164472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(HEXA_27);
1655f34f2dcSJed Brown       *perm            = hexa_27;
1665f34f2dcSJed Brown       break;
1675f34f2dcSJed Brown     case 64:
168472b9844SJames Wright       element_type_tmp = CGNS_ENUMV(HEXA_64);
1695f34f2dcSJed Brown       *perm            = hexa_64;
1705f34f2dcSJed Brown       break;
171d71ae5a4SJacob Faibussowitsch     default:
172d71ae5a4SJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
1735f34f2dcSJed Brown     }
1745f34f2dcSJed Brown     break;
175d71ae5a4SJacob Faibussowitsch   default:
176d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cell type %s with closure size %" PetscInt_FMT, DMPolytopeTypes[cell_type], closure_size);
1775f34f2dcSJed Brown   }
178472b9844SJames Wright   if (element_type) *element_type = element_type_tmp;
179472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
180472b9844SJames Wright }
181472b9844SJames Wright 
182472b9844SJames Wright /*
183472b9844SJames Wright   Input Parameters:
184472b9844SJames Wright + cellType  - The CGNS-defined element type
185472b9844SJames Wright 
186472b9844SJames Wright   Output Parameters:
187472b9844SJames Wright + dmcelltype  - The equivalent DMPolytopeType for the cellType
188472b9844SJames Wright . numCorners - Number of corners of the polytope
189472b9844SJames Wright - dim - The topological dimension of the polytope
190472b9844SJames Wright 
191472b9844SJames Wright CGNS elements defined in: https://cgns.github.io/CGNS_docs_current/sids/conv.html#unstructgrid
192472b9844SJames Wright */
193472b9844SJames Wright static inline PetscErrorCode CGNSElementTypeGetTopologyInfo(CGNS_ENUMT(ElementType_t) cellType, DMPolytopeType *dmcelltype, PetscInt *numCorners, PetscInt *dim)
194472b9844SJames Wright {
195472b9844SJames Wright   DMPolytopeType _dmcelltype;
196472b9844SJames Wright 
197472b9844SJames Wright   PetscFunctionBeginUser;
198472b9844SJames Wright   switch (cellType) {
199472b9844SJames Wright   case CGNS_ENUMV(BAR_2):
200472b9844SJames Wright   case CGNS_ENUMV(BAR_3):
201472b9844SJames Wright   case CGNS_ENUMV(BAR_4):
202472b9844SJames Wright   case CGNS_ENUMV(BAR_5):
203472b9844SJames Wright     _dmcelltype = DM_POLYTOPE_SEGMENT;
204472b9844SJames Wright     break;
205472b9844SJames Wright   case CGNS_ENUMV(TRI_3):
206472b9844SJames Wright   case CGNS_ENUMV(TRI_6):
207472b9844SJames Wright   case CGNS_ENUMV(TRI_9):
208472b9844SJames Wright   case CGNS_ENUMV(TRI_10):
209472b9844SJames Wright   case CGNS_ENUMV(TRI_12):
210472b9844SJames Wright   case CGNS_ENUMV(TRI_15):
211472b9844SJames Wright     _dmcelltype = DM_POLYTOPE_TRIANGLE;
212472b9844SJames Wright     break;
213472b9844SJames Wright   case CGNS_ENUMV(QUAD_4):
214472b9844SJames Wright   case CGNS_ENUMV(QUAD_8):
215472b9844SJames Wright   case CGNS_ENUMV(QUAD_9):
216472b9844SJames Wright   case CGNS_ENUMV(QUAD_12):
217472b9844SJames Wright   case CGNS_ENUMV(QUAD_16):
218472b9844SJames Wright   case CGNS_ENUMV(QUAD_P4_16):
219472b9844SJames Wright   case CGNS_ENUMV(QUAD_25):
220472b9844SJames Wright     _dmcelltype = DM_POLYTOPE_QUADRILATERAL;
221472b9844SJames Wright     break;
222472b9844SJames Wright   case CGNS_ENUMV(TETRA_4):
223472b9844SJames Wright   case CGNS_ENUMV(TETRA_10):
224472b9844SJames Wright   case CGNS_ENUMV(TETRA_16):
225472b9844SJames Wright   case CGNS_ENUMV(TETRA_20):
226472b9844SJames Wright   case CGNS_ENUMV(TETRA_22):
227472b9844SJames Wright   case CGNS_ENUMV(TETRA_34):
228472b9844SJames Wright   case CGNS_ENUMV(TETRA_35):
229472b9844SJames Wright     _dmcelltype = DM_POLYTOPE_TETRAHEDRON;
230472b9844SJames Wright     break;
231472b9844SJames Wright   case CGNS_ENUMV(PYRA_5):
232472b9844SJames Wright   case CGNS_ENUMV(PYRA_13):
233472b9844SJames Wright   case CGNS_ENUMV(PYRA_14):
234472b9844SJames Wright   case CGNS_ENUMV(PYRA_21):
235472b9844SJames Wright   case CGNS_ENUMV(PYRA_29):
236472b9844SJames Wright   case CGNS_ENUMV(PYRA_P4_29):
237472b9844SJames Wright   case CGNS_ENUMV(PYRA_30):
238472b9844SJames Wright   case CGNS_ENUMV(PYRA_50):
239472b9844SJames Wright   case CGNS_ENUMV(PYRA_55):
240472b9844SJames Wright     _dmcelltype = DM_POLYTOPE_PYRAMID;
241472b9844SJames Wright     break;
242472b9844SJames Wright   case CGNS_ENUMV(PENTA_6):
243472b9844SJames Wright   case CGNS_ENUMV(PENTA_15):
244472b9844SJames Wright   case CGNS_ENUMV(PENTA_18):
245472b9844SJames Wright   case CGNS_ENUMV(PENTA_24):
246472b9844SJames Wright   case CGNS_ENUMV(PENTA_33):
247472b9844SJames Wright   case CGNS_ENUMV(PENTA_38):
248472b9844SJames Wright   case CGNS_ENUMV(PENTA_40):
249472b9844SJames Wright   case CGNS_ENUMV(PENTA_66):
250472b9844SJames Wright   case CGNS_ENUMV(PENTA_75):
251472b9844SJames Wright     _dmcelltype = DM_POLYTOPE_TRI_PRISM;
252472b9844SJames Wright     break;
253472b9844SJames Wright   case CGNS_ENUMV(HEXA_8):
254472b9844SJames Wright   case CGNS_ENUMV(HEXA_20):
255472b9844SJames Wright   case CGNS_ENUMV(HEXA_27):
256472b9844SJames Wright   case CGNS_ENUMV(HEXA_32):
257472b9844SJames Wright   case CGNS_ENUMV(HEXA_44):
258472b9844SJames Wright   case CGNS_ENUMV(HEXA_56):
259472b9844SJames Wright   case CGNS_ENUMV(HEXA_64):
260472b9844SJames Wright   case CGNS_ENUMV(HEXA_98):
261472b9844SJames Wright   case CGNS_ENUMV(HEXA_125):
262472b9844SJames Wright     _dmcelltype = DM_POLYTOPE_HEXAHEDRON;
263472b9844SJames Wright     break;
264472b9844SJames Wright   case CGNS_ENUMV(MIXED):
265472b9844SJames Wright     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid CGNS ElementType_t: MIXED");
266472b9844SJames Wright   default:
267472b9844SJames Wright     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid CGNS ElementType_t: %d", (int)cellType);
268472b9844SJames Wright   }
269472b9844SJames Wright 
270472b9844SJames Wright   if (dmcelltype) *dmcelltype = _dmcelltype;
271472b9844SJames Wright   if (numCorners) *numCorners = DMPolytopeTypeGetNumVertices(_dmcelltype);
272472b9844SJames Wright   if (dim) *dim = DMPolytopeTypeGetDim(_dmcelltype);
273472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
274472b9844SJames Wright }
275472b9844SJames Wright 
276472b9844SJames Wright /*
277472b9844SJames Wright   Input Parameters:
278472b9844SJames Wright + cellType  - The CGNS-defined cell type
279472b9844SJames Wright 
280472b9844SJames Wright   Output Parameters:
281472b9844SJames Wright + numClosure - Number of nodes that define the function space on the cell
282472b9844SJames Wright - pOrder - The polynomial order of the cell
283472b9844SJames Wright 
284472b9844SJames Wright CGNS elements defined in: https://cgns.github.io/CGNS_docs_current/sids/conv.html#unstructgrid
285472b9844SJames Wright 
286472b9844SJames Wright Note: we only support "full" elements, ie. not seredipity elements
287472b9844SJames Wright */
288472b9844SJames Wright static inline PetscErrorCode CGNSElementTypeGetDiscretizationInfo(CGNS_ENUMT(ElementType_t) cellType, PetscInt *numClosure, PetscInt *pOrder)
289472b9844SJames Wright {
290472b9844SJames Wright   PetscInt _numClosure, _pOrder;
291472b9844SJames Wright 
292472b9844SJames Wright   PetscFunctionBeginUser;
293472b9844SJames Wright   switch (cellType) {
294472b9844SJames Wright   case CGNS_ENUMV(BAR_2):
295472b9844SJames Wright     _numClosure = 2;
296472b9844SJames Wright     _pOrder     = 1;
297472b9844SJames Wright     break;
298472b9844SJames Wright   case CGNS_ENUMV(BAR_3):
299472b9844SJames Wright     _numClosure = 3;
300472b9844SJames Wright     _pOrder     = 2;
301472b9844SJames Wright     break;
302472b9844SJames Wright   case CGNS_ENUMV(BAR_4):
303472b9844SJames Wright     _numClosure = 4;
304472b9844SJames Wright     _pOrder     = 3;
305472b9844SJames Wright     break;
306472b9844SJames Wright   case CGNS_ENUMV(BAR_5):
307472b9844SJames Wright     _numClosure = 5;
308472b9844SJames Wright     _pOrder     = 4;
309472b9844SJames Wright     break;
310472b9844SJames Wright   case CGNS_ENUMV(TRI_3):
311472b9844SJames Wright     _numClosure = 3;
312472b9844SJames Wright     _pOrder     = 1;
313472b9844SJames Wright     break;
314472b9844SJames Wright   case CGNS_ENUMV(TRI_6):
315472b9844SJames Wright     _numClosure = 6;
316472b9844SJames Wright     _pOrder     = 2;
317472b9844SJames Wright     break;
318472b9844SJames Wright   case CGNS_ENUMV(TRI_10):
319472b9844SJames Wright     _numClosure = 10;
320472b9844SJames Wright     _pOrder     = 3;
321472b9844SJames Wright     break;
322472b9844SJames Wright   case CGNS_ENUMV(TRI_15):
323472b9844SJames Wright     _numClosure = 15;
324472b9844SJames Wright     _pOrder     = 4;
325472b9844SJames Wright     break;
326472b9844SJames Wright   case CGNS_ENUMV(QUAD_4):
327472b9844SJames Wright     _numClosure = 4;
328472b9844SJames Wright     _pOrder     = 1;
329472b9844SJames Wright     break;
330472b9844SJames Wright   case CGNS_ENUMV(QUAD_9):
331472b9844SJames Wright     _numClosure = 9;
332472b9844SJames Wright     _pOrder     = 2;
333472b9844SJames Wright     break;
334472b9844SJames Wright   case CGNS_ENUMV(QUAD_16):
335472b9844SJames Wright     _numClosure = 16;
336472b9844SJames Wright     _pOrder     = 3;
337472b9844SJames Wright     break;
338472b9844SJames Wright   case CGNS_ENUMV(QUAD_25):
339472b9844SJames Wright     _numClosure = 25;
340472b9844SJames Wright     _pOrder     = 4;
341472b9844SJames Wright     break;
342472b9844SJames Wright   case CGNS_ENUMV(TETRA_4):
343472b9844SJames Wright     _numClosure = 4;
344472b9844SJames Wright     _pOrder     = 1;
345472b9844SJames Wright     break;
346472b9844SJames Wright   case CGNS_ENUMV(TETRA_10):
347472b9844SJames Wright     _numClosure = 10;
348472b9844SJames Wright     _pOrder     = 2;
349472b9844SJames Wright     break;
350472b9844SJames Wright   case CGNS_ENUMV(TETRA_20):
351472b9844SJames Wright     _numClosure = 20;
352472b9844SJames Wright     _pOrder     = 3;
353472b9844SJames Wright     break;
354472b9844SJames Wright   case CGNS_ENUMV(TETRA_35):
355472b9844SJames Wright     _numClosure = 35;
356472b9844SJames Wright     _pOrder     = 4;
357472b9844SJames Wright     break;
358472b9844SJames Wright   case CGNS_ENUMV(PYRA_5):
359472b9844SJames Wright     _numClosure = 5;
360472b9844SJames Wright     _pOrder     = 1;
361472b9844SJames Wright     break;
362472b9844SJames Wright   case CGNS_ENUMV(PYRA_14):
363472b9844SJames Wright     _numClosure = 14;
364472b9844SJames Wright     _pOrder     = 2;
365472b9844SJames Wright     break;
366472b9844SJames Wright   case CGNS_ENUMV(PYRA_30):
367472b9844SJames Wright     _numClosure = 30;
368472b9844SJames Wright     _pOrder     = 3;
369472b9844SJames Wright     break;
370472b9844SJames Wright   case CGNS_ENUMV(PYRA_55):
371472b9844SJames Wright     _numClosure = 55;
372472b9844SJames Wright     _pOrder     = 4;
373472b9844SJames Wright     break;
374472b9844SJames Wright   case CGNS_ENUMV(PENTA_6):
375472b9844SJames Wright     _numClosure = 6;
376472b9844SJames Wright     _pOrder     = 1;
377472b9844SJames Wright     break;
378472b9844SJames Wright   case CGNS_ENUMV(PENTA_18):
379472b9844SJames Wright     _numClosure = 18;
380472b9844SJames Wright     _pOrder     = 2;
381472b9844SJames Wright     break;
382472b9844SJames Wright   case CGNS_ENUMV(PENTA_40):
383472b9844SJames Wright     _numClosure = 40;
384472b9844SJames Wright     _pOrder     = 3;
385472b9844SJames Wright     break;
386472b9844SJames Wright   case CGNS_ENUMV(PENTA_75):
387472b9844SJames Wright     _numClosure = 75;
388472b9844SJames Wright     _pOrder     = 4;
389472b9844SJames Wright     break;
390472b9844SJames Wright   case CGNS_ENUMV(HEXA_8):
391472b9844SJames Wright     _numClosure = 8;
392472b9844SJames Wright     _pOrder     = 1;
393472b9844SJames Wright     break;
394472b9844SJames Wright   case CGNS_ENUMV(HEXA_27):
395472b9844SJames Wright     _numClosure = 27;
396472b9844SJames Wright     _pOrder     = 2;
397472b9844SJames Wright     break;
398472b9844SJames Wright   case CGNS_ENUMV(HEXA_64):
399472b9844SJames Wright     _numClosure = 64;
400472b9844SJames Wright     _pOrder     = 3;
401472b9844SJames Wright     break;
402472b9844SJames Wright   case CGNS_ENUMV(HEXA_125):
403472b9844SJames Wright     _numClosure = 125;
404472b9844SJames Wright     _pOrder     = 4;
405472b9844SJames Wright     break;
406472b9844SJames Wright   case CGNS_ENUMV(MIXED):
407472b9844SJames Wright     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid CGNS ElementType_t: MIXED");
408472b9844SJames Wright   default:
409472b9844SJames Wright     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported or Invalid cell type %d", (int)cellType);
410472b9844SJames Wright   }
411472b9844SJames Wright   if (numClosure) *numClosure = _numClosure;
412472b9844SJames Wright   if (pOrder) *pOrder = _pOrder;
413472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
414472b9844SJames Wright }
415472b9844SJames Wright 
416472b9844SJames Wright static PetscErrorCode PetscCGNSDataType(PetscDataType pd, CGNS_ENUMT(DataType_t) * cd)
417472b9844SJames Wright {
418472b9844SJames Wright   PetscFunctionBegin;
419472b9844SJames Wright   switch (pd) {
420472b9844SJames Wright   case PETSC_FLOAT:
421472b9844SJames Wright     *cd = CGNS_ENUMV(RealSingle);
422472b9844SJames Wright     break;
423472b9844SJames Wright   case PETSC_DOUBLE:
424472b9844SJames Wright     *cd = CGNS_ENUMV(RealDouble);
425472b9844SJames Wright     break;
426472b9844SJames Wright   case PETSC_COMPLEX:
427472b9844SJames Wright     *cd = CGNS_ENUMV(ComplexDouble);
428472b9844SJames Wright     break;
429472b9844SJames Wright   default:
430472b9844SJames Wright     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Data type %s", PetscDataTypes[pd]);
431472b9844SJames Wright   }
432472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
433472b9844SJames Wright }
434472b9844SJames Wright 
435472b9844SJames Wright PetscErrorCode DMPlexCreateCGNSFromFile_Internal(MPI_Comm comm, const char filename[], PetscBool interpolate, DM *dm)
436472b9844SJames Wright {
437472b9844SJames Wright   int       cgid                = -1;
438472b9844SJames Wright   PetscBool use_parallel_viewer = PETSC_FALSE;
439472b9844SJames Wright 
440472b9844SJames Wright   PetscFunctionBegin;
441472b9844SJames Wright   PetscAssertPointer(filename, 2);
442472b9844SJames Wright   PetscCall(PetscOptionsGetBool(NULL, NULL, "-dm_plex_cgns_parallel", &use_parallel_viewer, NULL));
443472b9844SJames Wright 
444472b9844SJames Wright   if (use_parallel_viewer) {
445472b9844SJames Wright     PetscCallCGNS(cgp_mpi_comm(comm));
446472b9844SJames Wright     PetscCallCGNS(cgp_open(filename, CG_MODE_READ, &cgid));
447472b9844SJames Wright     PetscCheck(cgid > 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "cgp_open(\"%s\",...) did not return a valid file ID", filename);
448472b9844SJames Wright     PetscCall(DMPlexCreateCGNS(comm, cgid, interpolate, dm));
449472b9844SJames Wright     PetscCallCGNS(cgp_close(cgid));
450472b9844SJames Wright   } else {
451472b9844SJames Wright     PetscCallCGNS(cg_open(filename, CG_MODE_READ, &cgid));
452472b9844SJames Wright     PetscCheck(cgid > 0, PETSC_COMM_SELF, PETSC_ERR_LIB, "cg_open(\"%s\",...) did not return a valid file ID", filename);
453472b9844SJames Wright     PetscCall(DMPlexCreateCGNS(comm, cgid, interpolate, dm));
454472b9844SJames Wright     PetscCallCGNS(cg_close(cgid));
455472b9844SJames Wright   }
456472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
457472b9844SJames Wright }
458472b9844SJames Wright 
459472b9844SJames Wright PetscErrorCode DMPlexCreateCGNS_Internal_Serial(MPI_Comm comm, PetscInt cgid, PetscBool interpolate, DM *dm)
460472b9844SJames Wright {
461472b9844SJames Wright   PetscMPIInt  num_proc, rank;
462472b9844SJames Wright   DM           cdm;
463472b9844SJames Wright   DMLabel      label;
464472b9844SJames Wright   PetscSection coordSection;
465472b9844SJames Wright   Vec          coordinates;
466472b9844SJames Wright   PetscScalar *coords;
467472b9844SJames Wright   PetscInt    *cellStart, *vertStart, v;
468472b9844SJames Wright   PetscInt     labelIdRange[2], labelId;
469472b9844SJames Wright   /* Read from file */
470472b9844SJames Wright   char      basename[CGIO_MAX_NAME_LENGTH + 1];
471472b9844SJames Wright   char      buffer[CGIO_MAX_NAME_LENGTH + 1];
472472b9844SJames Wright   int       dim = 0, physDim = 0, coordDim = 0, numVertices = 0, numCells = 0;
473472b9844SJames Wright   int       nzones = 0;
474472b9844SJames Wright   const int B      = 1; // Only support single base
475472b9844SJames Wright 
476472b9844SJames Wright   PetscFunctionBegin;
477472b9844SJames Wright   PetscCallMPI(MPI_Comm_rank(comm, &rank));
478472b9844SJames Wright   PetscCallMPI(MPI_Comm_size(comm, &num_proc));
479472b9844SJames Wright   PetscCall(DMCreate(comm, dm));
480472b9844SJames Wright   PetscCall(DMSetType(*dm, DMPLEX));
481472b9844SJames Wright 
482472b9844SJames Wright   /* Open CGNS II file and read basic information on rank 0, then broadcast to all processors */
483472b9844SJames Wright   if (rank == 0) {
484472b9844SJames Wright     int nbases, z;
485472b9844SJames Wright 
486472b9844SJames Wright     PetscCallCGNS(cg_nbases(cgid, &nbases));
487472b9844SJames Wright     PetscCheck(nbases <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single base, not %d", nbases);
488472b9844SJames Wright     PetscCallCGNS(cg_base_read(cgid, B, basename, &dim, &physDim));
489472b9844SJames Wright     PetscCallCGNS(cg_nzones(cgid, B, &nzones));
490472b9844SJames Wright     PetscCall(PetscCalloc2(nzones + 1, &cellStart, nzones + 1, &vertStart));
491472b9844SJames Wright     for (z = 1; z <= nzones; ++z) {
492472b9844SJames Wright       cgsize_t sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
493472b9844SJames Wright 
494472b9844SJames Wright       PetscCallCGNS(cg_zone_read(cgid, B, z, buffer, sizes));
495472b9844SJames Wright       numVertices += sizes[0];
496472b9844SJames Wright       numCells += sizes[1];
497472b9844SJames Wright       cellStart[z] += sizes[1] + cellStart[z - 1];
498472b9844SJames Wright       vertStart[z] += sizes[0] + vertStart[z - 1];
499472b9844SJames Wright     }
500472b9844SJames Wright     for (z = 1; z <= nzones; ++z) vertStart[z] += numCells;
501472b9844SJames Wright     coordDim = dim;
502472b9844SJames Wright   }
503472b9844SJames Wright   PetscCallMPI(MPI_Bcast(basename, CGIO_MAX_NAME_LENGTH + 1, MPI_CHAR, 0, comm));
504472b9844SJames Wright   PetscCallMPI(MPI_Bcast(&dim, 1, MPI_INT, 0, comm));
505472b9844SJames Wright   PetscCallMPI(MPI_Bcast(&coordDim, 1, MPI_INT, 0, comm));
506472b9844SJames Wright   PetscCallMPI(MPI_Bcast(&nzones, 1, MPI_INT, 0, comm));
507472b9844SJames Wright 
508472b9844SJames Wright   PetscCall(PetscObjectSetName((PetscObject)*dm, basename));
509472b9844SJames Wright   PetscCall(DMSetDimension(*dm, dim));
510472b9844SJames Wright   PetscCall(DMCreateLabel(*dm, "celltype"));
511472b9844SJames Wright   PetscCall(DMPlexSetChart(*dm, 0, numCells + numVertices));
512472b9844SJames Wright 
513472b9844SJames Wright   /* Read zone information */
514472b9844SJames Wright   if (rank == 0) {
515472b9844SJames Wright     int z, c, c_loc;
516472b9844SJames Wright 
517472b9844SJames Wright     /* Read the cell set connectivity table and build mesh topology
518472b9844SJames Wright        CGNS standard requires that cells in a zone be numbered sequentially and be pairwise disjoint. */
519472b9844SJames Wright     /* First set sizes */
520472b9844SJames Wright     for (z = 1, c = 0; z <= nzones; ++z) {
521472b9844SJames Wright       CGNS_ENUMT(ZoneType_t) zonetype;
522472b9844SJames Wright       int nsections;
523472b9844SJames Wright       CGNS_ENUMT(ElementType_t) cellType;
524472b9844SJames Wright       cgsize_t       start, end;
525472b9844SJames Wright       int            nbndry, parentFlag;
526472b9844SJames Wright       PetscInt       numCorners, pOrder;
527472b9844SJames Wright       DMPolytopeType ctype;
528472b9844SJames Wright       const int      S = 1; // Only support single section
529472b9844SJames Wright 
530472b9844SJames Wright       PetscCallCGNS(cg_zone_type(cgid, B, z, &zonetype));
531472b9844SJames Wright       PetscCheck(zonetype != CGNS_ENUMV(Structured), PETSC_COMM_SELF, PETSC_ERR_LIB, "Can only handle Unstructured zones for CGNS");
532472b9844SJames Wright       PetscCallCGNS(cg_nsections(cgid, B, z, &nsections));
533472b9844SJames Wright       PetscCheck(nsections <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single section, not %d", nsections);
534472b9844SJames Wright       PetscCallCGNS(cg_section_read(cgid, B, z, S, buffer, &cellType, &start, &end, &nbndry, &parentFlag));
535472b9844SJames Wright       if (cellType == CGNS_ENUMV(MIXED)) {
536472b9844SJames Wright         cgsize_t elementDataSize, *elements;
537472b9844SJames Wright         PetscInt off;
538472b9844SJames Wright 
539472b9844SJames Wright         PetscCallCGNS(cg_ElementDataSize(cgid, B, z, S, &elementDataSize));
540472b9844SJames Wright         PetscCall(PetscMalloc1(elementDataSize, &elements));
541472b9844SJames Wright         PetscCallCGNS(cg_poly_elements_read(cgid, B, z, S, elements, NULL, NULL));
542472b9844SJames Wright         for (c_loc = start, off = 0; c_loc <= end; ++c_loc, ++c) {
543*ca328833SJames Wright           PetscCall(CGNSElementTypeGetTopologyInfo((CGNS_ENUMT(ElementType_t))elements[off], &ctype, &numCorners, NULL));
544*ca328833SJames Wright           PetscCall(CGNSElementTypeGetDiscretizationInfo((CGNS_ENUMT(ElementType_t))elements[off], NULL, &pOrder));
545472b9844SJames Wright           PetscCheck(pOrder == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Serial CGNS reader only supports first order elements, not %" PetscInt_FMT " order", pOrder);
546472b9844SJames Wright           PetscCall(DMPlexSetConeSize(*dm, c, numCorners));
547472b9844SJames Wright           PetscCall(DMPlexSetCellType(*dm, c, ctype));
548472b9844SJames Wright           off += numCorners + 1;
549472b9844SJames Wright         }
550472b9844SJames Wright         PetscCall(PetscFree(elements));
551472b9844SJames Wright       } else {
552472b9844SJames Wright         PetscCall(CGNSElementTypeGetTopologyInfo(cellType, &ctype, &numCorners, NULL));
553472b9844SJames Wright         PetscCall(CGNSElementTypeGetDiscretizationInfo(cellType, NULL, &pOrder));
554472b9844SJames Wright         PetscCheck(pOrder == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Serial CGNS reader only supports first order elements, not %" PetscInt_FMT " order", pOrder);
555472b9844SJames Wright         for (c_loc = start; c_loc <= end; ++c_loc, ++c) {
556472b9844SJames Wright           PetscCall(DMPlexSetConeSize(*dm, c, numCorners));
557472b9844SJames Wright           PetscCall(DMPlexSetCellType(*dm, c, ctype));
558472b9844SJames Wright         }
559472b9844SJames Wright       }
560472b9844SJames Wright     }
561472b9844SJames Wright     for (v = numCells; v < numCells + numVertices; ++v) PetscCall(DMPlexSetCellType(*dm, v, DM_POLYTOPE_POINT));
562472b9844SJames Wright   }
563472b9844SJames Wright 
564472b9844SJames Wright   PetscCall(DMSetUp(*dm));
565472b9844SJames Wright 
566472b9844SJames Wright   PetscCall(DMCreateLabel(*dm, "zone"));
567472b9844SJames Wright   if (rank == 0) {
568472b9844SJames Wright     int z, c, c_loc, v_loc;
569472b9844SJames Wright 
570472b9844SJames Wright     PetscCall(DMGetLabel(*dm, "zone", &label));
571472b9844SJames Wright     for (z = 1, c = 0; z <= nzones; ++z) {
572472b9844SJames Wright       CGNS_ENUMT(ElementType_t) cellType;
573472b9844SJames Wright       cgsize_t  elementDataSize, *elements, start, end;
574472b9844SJames Wright       int       nbndry, parentFlag;
575472b9844SJames Wright       PetscInt *cone, numc, numCorners, maxCorners = 27, pOrder;
576472b9844SJames Wright       const int S = 1; // Only support single section
577472b9844SJames Wright 
578472b9844SJames Wright       PetscCallCGNS(cg_section_read(cgid, B, z, S, buffer, &cellType, &start, &end, &nbndry, &parentFlag));
579472b9844SJames Wright       numc = end - start;
580472b9844SJames Wright       PetscCallCGNS(cg_ElementDataSize(cgid, B, z, S, &elementDataSize));
581472b9844SJames Wright       PetscCall(PetscMalloc2(elementDataSize, &elements, maxCorners, &cone));
582472b9844SJames Wright       PetscCallCGNS(cg_poly_elements_read(cgid, B, z, S, elements, NULL, NULL));
583472b9844SJames Wright       if (cellType == CGNS_ENUMV(MIXED)) {
584472b9844SJames Wright         /* CGNS uses Fortran-based indexing, DMPlex uses C-style and numbers cell first then vertices. */
585472b9844SJames Wright         for (c_loc = 0, v = 0; c_loc <= numc; ++c_loc, ++c) {
586*ca328833SJames Wright           PetscCall(CGNSElementTypeGetTopologyInfo((CGNS_ENUMT(ElementType_t))elements[v], NULL, &numCorners, NULL));
587*ca328833SJames Wright           PetscCall(CGNSElementTypeGetDiscretizationInfo((CGNS_ENUMT(ElementType_t))elements[v], NULL, &pOrder));
588472b9844SJames Wright           PetscCheck(pOrder == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Serial CGNS reader only supports first order elements, not %" PetscInt_FMT " order", pOrder);
589472b9844SJames Wright           ++v;
590472b9844SJames Wright           for (v_loc = 0; v_loc < numCorners; ++v_loc, ++v) cone[v_loc] = elements[v] + numCells - 1;
591472b9844SJames Wright           PetscCall(DMPlexReorderCell(*dm, c, cone));
592472b9844SJames Wright           PetscCall(DMPlexSetCone(*dm, c, cone));
593472b9844SJames Wright           PetscCall(DMLabelSetValue(label, c, z));
594472b9844SJames Wright         }
595472b9844SJames Wright       } else {
596472b9844SJames Wright         PetscCall(CGNSElementTypeGetTopologyInfo(cellType, NULL, &numCorners, NULL));
597472b9844SJames Wright         PetscCall(CGNSElementTypeGetDiscretizationInfo(cellType, NULL, &pOrder));
598472b9844SJames Wright         PetscCheck(pOrder == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Serial CGNS reader only supports first order elements, not %" PetscInt_FMT " order", pOrder);
599472b9844SJames Wright         /* CGNS uses Fortran-based indexing, DMPlex uses C-style and numbers cell first then vertices. */
600472b9844SJames Wright         for (c_loc = 0, v = 0; c_loc <= numc; ++c_loc, ++c) {
601472b9844SJames Wright           for (v_loc = 0; v_loc < numCorners; ++v_loc, ++v) cone[v_loc] = elements[v] + numCells - 1;
602472b9844SJames Wright           PetscCall(DMPlexReorderCell(*dm, c, cone));
603472b9844SJames Wright           PetscCall(DMPlexSetCone(*dm, c, cone));
604472b9844SJames Wright           PetscCall(DMLabelSetValue(label, c, z));
605472b9844SJames Wright         }
606472b9844SJames Wright       }
607472b9844SJames Wright       PetscCall(PetscFree2(elements, cone));
608472b9844SJames Wright     }
609472b9844SJames Wright   }
610472b9844SJames Wright 
611472b9844SJames Wright   PetscCall(DMPlexSymmetrize(*dm));
612472b9844SJames Wright   PetscCall(DMPlexStratify(*dm));
613472b9844SJames Wright   if (interpolate) {
614472b9844SJames Wright     DM idm;
615472b9844SJames Wright 
616472b9844SJames Wright     PetscCall(DMPlexInterpolate(*dm, &idm));
617472b9844SJames Wright     PetscCall(DMDestroy(dm));
618472b9844SJames Wright     *dm = idm;
619472b9844SJames Wright   }
620472b9844SJames Wright 
621472b9844SJames Wright   /* Read coordinates */
622472b9844SJames Wright   PetscCall(DMSetCoordinateDim(*dm, coordDim));
623472b9844SJames Wright   PetscCall(DMGetCoordinateDM(*dm, &cdm));
624472b9844SJames Wright   PetscCall(DMGetLocalSection(cdm, &coordSection));
625472b9844SJames Wright   PetscCall(PetscSectionSetNumFields(coordSection, 1));
626472b9844SJames Wright   PetscCall(PetscSectionSetFieldComponents(coordSection, 0, coordDim));
627472b9844SJames Wright   PetscCall(PetscSectionSetChart(coordSection, numCells, numCells + numVertices));
628472b9844SJames Wright   for (v = numCells; v < numCells + numVertices; ++v) {
629472b9844SJames Wright     PetscCall(PetscSectionSetDof(coordSection, v, dim));
630472b9844SJames Wright     PetscCall(PetscSectionSetFieldDof(coordSection, v, 0, coordDim));
631472b9844SJames Wright   }
632472b9844SJames Wright   PetscCall(PetscSectionSetUp(coordSection));
633472b9844SJames Wright 
634472b9844SJames Wright   PetscCall(DMCreateLocalVector(cdm, &coordinates));
635472b9844SJames Wright   PetscCall(VecGetArray(coordinates, &coords));
636472b9844SJames Wright   if (rank == 0) {
637472b9844SJames Wright     PetscInt off = 0;
638472b9844SJames Wright     float   *x[3];
639472b9844SJames Wright     int      z, d;
640472b9844SJames Wright 
641472b9844SJames Wright     PetscCall(PetscMalloc3(numVertices, &x[0], numVertices, &x[1], numVertices, &x[2]));
642472b9844SJames Wright     for (z = 1; z <= nzones; ++z) {
643472b9844SJames Wright       CGNS_ENUMT(DataType_t) datatype;
644472b9844SJames Wright       cgsize_t sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
645472b9844SJames Wright       cgsize_t range_min[3] = {1, 1, 1};
646472b9844SJames Wright       cgsize_t range_max[3] = {1, 1, 1};
647472b9844SJames Wright       int      ngrids, ncoords;
648472b9844SJames Wright 
649472b9844SJames Wright       PetscCallCGNS(cg_zone_read(cgid, B, z, buffer, sizes));
650472b9844SJames Wright       range_max[0] = sizes[0];
651472b9844SJames Wright       PetscCallCGNS(cg_ngrids(cgid, B, z, &ngrids));
652472b9844SJames Wright       PetscCheck(ngrids <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single grid, not %d", ngrids);
653472b9844SJames Wright       PetscCallCGNS(cg_ncoords(cgid, B, z, &ncoords));
654472b9844SJames Wright       PetscCheck(ncoords == coordDim, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a coordinate array for each dimension, not %d", ncoords);
655472b9844SJames Wright       for (d = 0; d < coordDim; ++d) {
656472b9844SJames Wright         PetscCallCGNS(cg_coord_info(cgid, B, z, 1 + d, &datatype, buffer));
657472b9844SJames Wright         PetscCallCGNS(cg_coord_read(cgid, B, z, buffer, CGNS_ENUMV(RealSingle), range_min, range_max, x[d]));
658472b9844SJames Wright       }
659472b9844SJames Wright       if (coordDim >= 1) {
660472b9844SJames Wright         for (v = 0; v < sizes[0]; ++v) coords[(v + off) * coordDim + 0] = x[0][v];
661472b9844SJames Wright       }
662472b9844SJames Wright       if (coordDim >= 2) {
663472b9844SJames Wright         for (v = 0; v < sizes[0]; ++v) coords[(v + off) * coordDim + 1] = x[1][v];
664472b9844SJames Wright       }
665472b9844SJames Wright       if (coordDim >= 3) {
666472b9844SJames Wright         for (v = 0; v < sizes[0]; ++v) coords[(v + off) * coordDim + 2] = x[2][v];
667472b9844SJames Wright       }
668472b9844SJames Wright       off += sizes[0];
669472b9844SJames Wright     }
670472b9844SJames Wright     PetscCall(PetscFree3(x[0], x[1], x[2]));
671472b9844SJames Wright   }
672472b9844SJames Wright   PetscCall(VecRestoreArray(coordinates, &coords));
673472b9844SJames Wright 
674472b9844SJames Wright   PetscCall(PetscObjectSetName((PetscObject)coordinates, "coordinates"));
675472b9844SJames Wright   PetscCall(VecSetBlockSize(coordinates, coordDim));
676472b9844SJames Wright   PetscCall(DMSetCoordinatesLocal(*dm, coordinates));
677472b9844SJames Wright   PetscCall(VecDestroy(&coordinates));
678472b9844SJames Wright 
679472b9844SJames Wright   /* Read boundary conditions */
680472b9844SJames Wright   PetscCall(DMGetNumLabels(*dm, &labelIdRange[0]));
681472b9844SJames Wright   if (rank == 0) {
682472b9844SJames Wright     CGNS_ENUMT(BCType_t) bctype;
683472b9844SJames Wright     CGNS_ENUMT(DataType_t) datatype;
684472b9844SJames Wright     CGNS_ENUMT(PointSetType_t) pointtype;
685472b9844SJames Wright     cgsize_t  *points;
686472b9844SJames Wright     PetscReal *normals;
687472b9844SJames Wright     int        normal[3];
688472b9844SJames Wright     char      *bcname = buffer;
689472b9844SJames Wright     cgsize_t   npoints, nnormals;
690472b9844SJames Wright     int        z, nbc, bc, c, ndatasets;
691472b9844SJames Wright 
692472b9844SJames Wright     for (z = 1; z <= nzones; ++z) {
693472b9844SJames Wright       PetscCallCGNS(cg_nbocos(cgid, B, z, &nbc));
694472b9844SJames Wright       for (bc = 1; bc <= nbc; ++bc) {
695472b9844SJames Wright         PetscCallCGNS(cg_boco_info(cgid, B, z, bc, bcname, &bctype, &pointtype, &npoints, normal, &nnormals, &datatype, &ndatasets));
696472b9844SJames Wright         PetscCall(DMCreateLabel(*dm, bcname));
697472b9844SJames Wright         PetscCall(DMGetLabel(*dm, bcname, &label));
698472b9844SJames Wright         PetscCall(PetscMalloc2(npoints, &points, nnormals, &normals));
699472b9844SJames Wright         PetscCallCGNS(cg_boco_read(cgid, B, z, bc, points, (void *)normals));
700472b9844SJames Wright         if (pointtype == CGNS_ENUMV(ElementRange)) {
701472b9844SJames Wright           // Range of cells: assuming half-open interval
702472b9844SJames Wright           for (c = points[0]; c < points[1]; ++c) PetscCall(DMLabelSetValue(label, c - cellStart[z - 1], 1));
703472b9844SJames Wright         } else if (pointtype == CGNS_ENUMV(ElementList)) {
704472b9844SJames Wright           // List of cells
705472b9844SJames Wright           for (c = 0; c < npoints; ++c) PetscCall(DMLabelSetValue(label, points[c] - cellStart[z - 1], 1));
706472b9844SJames Wright         } else if (pointtype == CGNS_ENUMV(PointRange)) {
707472b9844SJames Wright           CGNS_ENUMT(GridLocation_t) gridloc;
708472b9844SJames Wright 
709472b9844SJames Wright           // List of points:
710472b9844SJames Wright           PetscCallCGNS(cg_goto(cgid, 1, "Zone_t", z, "BC_t", bc, "end"));
711472b9844SJames Wright           PetscCallCGNS(cg_gridlocation_read(&gridloc));
712472b9844SJames Wright           // Range of points: assuming half-open interval
713472b9844SJames Wright           for (c = points[0]; c < points[1]; ++c) {
714472b9844SJames Wright             if (gridloc == CGNS_ENUMV(Vertex)) PetscCall(DMLabelSetValue(label, c - vertStart[z - 1], 1));
715472b9844SJames Wright             else PetscCall(DMLabelSetValue(label, c - cellStart[z - 1], 1));
716472b9844SJames Wright           }
717472b9844SJames Wright         } else if (pointtype == CGNS_ENUMV(PointList)) {
718472b9844SJames Wright           CGNS_ENUMT(GridLocation_t) gridloc;
719472b9844SJames Wright 
720472b9844SJames Wright           // List of points:
721472b9844SJames Wright           PetscCallCGNS(cg_goto(cgid, 1, "Zone_t", z, "BC_t", bc, "end"));
722472b9844SJames Wright           PetscCallCGNS(cg_gridlocation_read(&gridloc));
723472b9844SJames Wright           for (c = 0; c < npoints; ++c) {
724472b9844SJames Wright             if (gridloc == CGNS_ENUMV(Vertex)) PetscCall(DMLabelSetValue(label, points[c] - vertStart[z - 1], 1));
725472b9844SJames Wright             else PetscCall(DMLabelSetValue(label, points[c] - cellStart[z - 1], 1));
726472b9844SJames Wright           }
727472b9844SJames Wright         } else SETERRQ(comm, PETSC_ERR_SUP, "Unsupported point set type %d", (int)pointtype);
728472b9844SJames Wright         PetscCall(PetscFree2(points, normals));
729472b9844SJames Wright       }
730472b9844SJames Wright     }
731472b9844SJames Wright     PetscCall(PetscFree2(cellStart, vertStart));
732472b9844SJames Wright   }
733472b9844SJames Wright   PetscCall(DMGetNumLabels(*dm, &labelIdRange[1]));
734472b9844SJames Wright   PetscCallMPI(MPI_Bcast(labelIdRange, 2, MPIU_INT, 0, comm));
735472b9844SJames Wright 
736472b9844SJames Wright   /* Create BC labels at all processes */
737472b9844SJames Wright   for (labelId = labelIdRange[0]; labelId < labelIdRange[1]; ++labelId) {
738472b9844SJames Wright     char       *labelName = buffer;
739472b9844SJames Wright     size_t      len       = sizeof(buffer);
740472b9844SJames Wright     const char *locName;
741472b9844SJames Wright 
742472b9844SJames Wright     if (rank == 0) {
743472b9844SJames Wright       PetscCall(DMGetLabelByNum(*dm, labelId, &label));
744472b9844SJames Wright       PetscCall(PetscObjectGetName((PetscObject)label, &locName));
745472b9844SJames Wright       PetscCall(PetscStrncpy(labelName, locName, len));
746472b9844SJames Wright     }
747472b9844SJames Wright     PetscCallMPI(MPI_Bcast(labelName, (PetscMPIInt)len, MPIU_INT, 0, comm));
748472b9844SJames Wright     PetscCallMPI(DMCreateLabel(*dm, labelName));
749472b9844SJames Wright   }
750472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
751472b9844SJames Wright }
752472b9844SJames Wright 
753472b9844SJames Wright PetscErrorCode DMPlexCreateCGNS_Internal_Parallel(MPI_Comm comm, PetscInt cgid, PetscBool interpolate, DM *dm)
754472b9844SJames Wright {
755472b9844SJames Wright   PetscMPIInt num_proc, rank;
756472b9844SJames Wright   /* Read from file */
757472b9844SJames Wright   char     basename[CGIO_MAX_NAME_LENGTH + 1];
758472b9844SJames Wright   char     buffer[CGIO_MAX_NAME_LENGTH + 1];
759472b9844SJames Wright   int      dim = 0, physDim = 0, coordDim = 0;
760472b9844SJames Wright   PetscInt NVertices = 0, NCells = 0;
761472b9844SJames Wright   int      nzones = 0, nbases;
762472b9844SJames Wright   int      z      = 1; // Only supports single zone files
763472b9844SJames Wright   int      B      = 1; // Only supports single base
764472b9844SJames Wright 
765472b9844SJames Wright   PetscFunctionBegin;
766472b9844SJames Wright   PetscCallMPI(MPI_Comm_rank(comm, &rank));
767472b9844SJames Wright   PetscCallMPI(MPI_Comm_size(comm, &num_proc));
768472b9844SJames Wright   PetscCall(DMCreate(comm, dm));
769472b9844SJames Wright   PetscCall(DMSetType(*dm, DMPLEX));
770472b9844SJames Wright 
771472b9844SJames Wright   PetscCallCGNS(cg_nbases(cgid, &nbases));
772472b9844SJames Wright   PetscCheck(nbases <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single base, not %d", nbases);
773472b9844SJames Wright   //  From the CGNS web page                 cell_dim  phys_dim (embedding space in PETSC) CGNS defines as length of spatial vectors/components)
774472b9844SJames Wright   PetscCallCGNS(cg_base_read(cgid, B, basename, &dim, &physDim));
775472b9844SJames Wright   PetscCallCGNS(cg_nzones(cgid, B, &nzones));
776472b9844SJames Wright   PetscCheck(nzones == 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "Parallel reader limited to one zone, not %d", nzones);
777472b9844SJames Wright   {
778472b9844SJames Wright     cgsize_t sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
779472b9844SJames Wright 
780472b9844SJames Wright     PetscCallCGNS(cg_zone_read(cgid, B, z, buffer, sizes));
781472b9844SJames Wright     NVertices = sizes[0];
782472b9844SJames Wright     NCells    = sizes[1];
783472b9844SJames Wright   }
784472b9844SJames Wright 
785472b9844SJames Wright   PetscCall(PetscObjectSetName((PetscObject)*dm, basename));
786472b9844SJames Wright   PetscCall(DMSetDimension(*dm, dim));
787472b9844SJames Wright   coordDim = dim;
788472b9844SJames Wright 
789472b9844SJames Wright   // This is going to be a headache for mixed-topology and multiple sections. We may have to restore reading the data twice (once before  the SetChart
790472b9844SJames Wright   // call to get this right but continuing for now with single section, single topology, one zone.
791472b9844SJames Wright   // establish element ranges for my rank
792472b9844SJames Wright   PetscInt    mystarte, myende, mystartv, myendv, myownede, myownedv;
793472b9844SJames Wright   PetscLayout elem_map, vtx_map;
794472b9844SJames Wright   PetscCall(PetscLayoutCreateFromSizes(comm, PETSC_DECIDE, NCells, 1, &elem_map));
795472b9844SJames Wright   PetscCall(PetscLayoutCreateFromSizes(comm, PETSC_DECIDE, NVertices, 1, &vtx_map));
796472b9844SJames Wright   PetscCall(PetscLayoutGetRange(elem_map, &mystarte, &myende));
797472b9844SJames Wright   PetscCall(PetscLayoutGetLocalSize(elem_map, &myownede));
798472b9844SJames Wright   PetscCall(PetscLayoutGetRange(vtx_map, &mystartv, &myendv));
799472b9844SJames Wright   PetscCall(PetscLayoutGetLocalSize(vtx_map, &myownedv));
800472b9844SJames Wright 
801472b9844SJames Wright   // -- Build Plex in parallel
802f1a88294SStefano Zampini   DMPolytopeType dm_cell_type = DM_POLYTOPE_UNKNOWN;
803472b9844SJames Wright   PetscInt       pOrder = 1, numClosure = -1;
804472b9844SJames Wright   cgsize_t      *elements;
805472b9844SJames Wright   {
806472b9844SJames Wright     int        nsections;
807472b9844SJames Wright     PetscInt  *elementsQ1, numCorners = -1;
808472b9844SJames Wright     const int *perm;
809472b9844SJames Wright     cgsize_t   start, end; // Throwaway
810472b9844SJames Wright 
811472b9844SJames Wright     cg_nsections(cgid, B, z, &nsections);
812472b9844SJames Wright     // Read element connectivity
813472b9844SJames Wright     for (int index_sect = 1; index_sect <= nsections; index_sect++) {
814472b9844SJames Wright       int      nbndry, parentFlag;
815472b9844SJames Wright       PetscInt cell_dim;
816472b9844SJames Wright       CGNS_ENUMT(ElementType_t) cellType;
817472b9844SJames Wright 
818472b9844SJames Wright       PetscCallCGNS(cg_section_read(cgid, B, z, index_sect, buffer, &cellType, &start, &end, &nbndry, &parentFlag));
819472b9844SJames Wright 
820472b9844SJames Wright       PetscCall(CGNSElementTypeGetTopologyInfo(cellType, &dm_cell_type, &numCorners, &cell_dim));
821472b9844SJames Wright       // Skip over element that are not max dimension (ie. boundary elements)
822472b9844SJames Wright       if (cell_dim != dim) continue;
823472b9844SJames Wright       PetscCall(CGNSElementTypeGetDiscretizationInfo(cellType, &numClosure, &pOrder));
824472b9844SJames Wright       PetscCall(PetscMalloc1(myownede * numClosure, &elements));
825472b9844SJames Wright       PetscCallCGNS(cgp_elements_read_data(cgid, B, z, index_sect, mystarte + 1, myende, elements));
826472b9844SJames Wright       for (PetscInt v = 0; v < myownede * numClosure; ++v) elements[v] -= 1; // 0 based
827472b9844SJames Wright       break;
828472b9844SJames Wright     }
829472b9844SJames Wright 
830472b9844SJames Wright     // Create corners-only connectivity
831472b9844SJames Wright     PetscCall(PetscMalloc1(myownede * numCorners, &elementsQ1));
832472b9844SJames Wright     PetscCall(DMPlexCGNSGetPermutation_Internal(dm_cell_type, numCorners, NULL, &perm));
833472b9844SJames Wright     for (PetscInt e = 0; e < myownede; ++e) {
834472b9844SJames Wright       for (PetscInt v = 0; v < numCorners; ++v) elementsQ1[e * numCorners + perm[v]] = elements[e * numClosure + v];
835472b9844SJames Wright     }
836472b9844SJames Wright 
837472b9844SJames Wright     // Build cell-vertex Plex
838472b9844SJames Wright     PetscCall(DMPlexBuildFromCellListParallel(*dm, myownede, myownedv, NVertices, numCorners, elementsQ1, NULL, NULL));
839472b9844SJames Wright     PetscCall(DMViewFromOptions(*dm, NULL, "-corner_dm_view"));
840472b9844SJames Wright     PetscCall(PetscFree(elementsQ1));
841472b9844SJames Wright   }
842472b9844SJames Wright 
843472b9844SJames Wright   if (interpolate) {
844472b9844SJames Wright     DM idm;
845472b9844SJames Wright     PetscCall(DMPlexInterpolate(*dm, &idm));
846472b9844SJames Wright     PetscCall(DMDestroy(dm));
847472b9844SJames Wright     *dm = idm;
848472b9844SJames Wright     PetscCall(DMViewFromOptions(*dm, NULL, "-interpolate_dm_view"));
849472b9844SJames Wright   }
850472b9844SJames Wright 
851472b9844SJames Wright   // -- Create SF for naive nodal-data read to elements
852472b9844SJames Wright   PetscSF plex_to_cgns_sf;
853472b9844SJames Wright   {
854472b9844SJames Wright     PetscInt     nleaves, num_comp;
855472b9844SJames Wright     PetscInt    *leaf, num_leaves = 0;
856472b9844SJames Wright     PetscInt     cStart, cEnd;
857472b9844SJames Wright     const int   *perm;
858472b9844SJames Wright     PetscSF      cgns_to_local_sf;
859472b9844SJames Wright     PetscSection local_section;
860472b9844SJames Wright     PetscFE      fe;
861472b9844SJames Wright 
862472b9844SJames Wright     // sfNatural requires PetscSection to handle DMDistribute, so we use PetscFE to define the section
863472b9844SJames Wright     // Use number of components = 1 to work with just the nodes themselves
864472b9844SJames Wright     PetscCall(PetscFECreateLagrangeByCell(PETSC_COMM_SELF, dim, 1, dm_cell_type, pOrder, PETSC_DETERMINE, &fe));
865472b9844SJames Wright     PetscCall(PetscObjectSetName((PetscObject)fe, "FE for sfNatural"));
866472b9844SJames Wright     PetscCall(DMAddField(*dm, NULL, (PetscObject)fe));
867472b9844SJames Wright     PetscCall(DMCreateDS(*dm));
868472b9844SJames Wright     PetscCall(PetscFEDestroy(&fe));
869472b9844SJames Wright 
870472b9844SJames Wright     PetscCall(DMGetLocalSection(*dm, &local_section));
871472b9844SJames Wright     PetscCall(PetscSectionViewFromOptions(local_section, NULL, "-fe_natural_section_view"));
872472b9844SJames Wright     PetscCall(PetscSectionGetFieldComponents(local_section, 0, &num_comp));
873472b9844SJames Wright     PetscCall(PetscSectionGetStorageSize(local_section, &nleaves));
874472b9844SJames Wright     nleaves /= num_comp;
875472b9844SJames Wright     PetscCall(PetscMalloc1(nleaves, &leaf));
876472b9844SJames Wright     for (PetscInt i = 0; i < nleaves; i++) leaf[i] = -1;
877472b9844SJames Wright 
878472b9844SJames Wright     // Get the permutation from CGNS closure numbering to PLEX closure numbering
879472b9844SJames Wright     PetscCall(DMPlexCGNSGetPermutation_Internal(dm_cell_type, numClosure, NULL, &perm));
880472b9844SJames Wright     PetscCall(DMPlexGetHeightStratum(*dm, 0, &cStart, &cEnd));
881472b9844SJames Wright     for (PetscInt cell = cStart; cell < cEnd; ++cell) {
882472b9844SJames Wright       PetscInt num_closure_dof, *closure_idx = NULL;
883472b9844SJames Wright 
884472b9844SJames Wright       PetscCall(DMPlexGetClosureIndices(*dm, local_section, local_section, cell, PETSC_FALSE, &num_closure_dof, &closure_idx, NULL, NULL));
885472b9844SJames Wright       PetscAssert(numClosure * num_comp == num_closure_dof, comm, PETSC_ERR_PLIB, "Closure dof size does not match polytope");
886472b9844SJames Wright       for (PetscInt i = 0; i < numClosure; i++) {
887472b9844SJames Wright         PetscInt li = closure_idx[perm[i] * num_comp] / num_comp;
888472b9844SJames Wright         if (li < 0) continue;
889472b9844SJames Wright 
890472b9844SJames Wright         PetscInt cgns_idx = elements[cell * numClosure + i];
891472b9844SJames Wright         if (leaf[li] == -1) {
892472b9844SJames Wright           leaf[li] = cgns_idx;
893472b9844SJames Wright           num_leaves++;
894472b9844SJames Wright         } else PetscAssert(leaf[li] == cgns_idx, PETSC_COMM_SELF, PETSC_ERR_PLIB, "leaf does not match previously set");
895472b9844SJames Wright       }
896472b9844SJames Wright       PetscCall(DMPlexRestoreClosureIndices(*dm, local_section, local_section, cell, PETSC_FALSE, &num_closure_dof, &closure_idx, NULL, NULL));
897472b9844SJames Wright     }
898472b9844SJames Wright     PetscAssert(num_leaves == nleaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "leaf count in closure does not match nleaves");
899472b9844SJames Wright     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)*dm), &cgns_to_local_sf));
900472b9844SJames Wright     PetscCall(PetscSFSetGraphLayout(cgns_to_local_sf, vtx_map, nleaves, NULL, PETSC_USE_POINTER, leaf));
901472b9844SJames Wright     PetscCall(PetscObjectSetName((PetscObject)cgns_to_local_sf, "CGNS to Plex SF"));
902472b9844SJames Wright     PetscCall(PetscSFViewFromOptions(cgns_to_local_sf, NULL, "-CGNStoPlex_sf_view"));
903472b9844SJames Wright     PetscCall(PetscFree(leaf));
904472b9844SJames Wright     PetscCall(PetscFree(elements));
905472b9844SJames Wright 
906472b9844SJames Wright     { // Convert cgns_to_local to global_to_cgns
907472b9844SJames Wright       PetscSF sectionsf, cgns_to_global_sf;
908472b9844SJames Wright 
909472b9844SJames Wright       PetscCall(DMGetSectionSF(*dm, &sectionsf));
910472b9844SJames Wright       PetscCall(PetscSFComposeInverse(cgns_to_local_sf, sectionsf, &cgns_to_global_sf));
911472b9844SJames Wright       PetscCall(PetscSFDestroy(&cgns_to_local_sf));
912472b9844SJames Wright       PetscCall(PetscSFCreateInverseSF(cgns_to_global_sf, &plex_to_cgns_sf));
913472b9844SJames Wright       PetscCall(PetscObjectSetName((PetscObject)plex_to_cgns_sf, "Global Plex to CGNS"));
914472b9844SJames Wright       PetscCall(PetscSFDestroy(&cgns_to_global_sf));
915472b9844SJames Wright     }
916472b9844SJames Wright   }
917472b9844SJames Wright 
918472b9844SJames Wright   { // -- Set coordinates for DM
919472b9844SJames Wright     PetscScalar *coords;
920472b9844SJames Wright     float       *x[3];
921472b9844SJames Wright     double      *xd[3];
922472b9844SJames Wright     PetscBool    read_with_double;
923472b9844SJames Wright     PetscFE      cfe;
924472b9844SJames Wright 
925472b9844SJames Wright     // Setup coordinate space first. Use pOrder here for isoparametric; revisit with CPEX-0045 High Order.
926472b9844SJames Wright     PetscCall(PetscFECreateLagrangeByCell(PETSC_COMM_SELF, dim, coordDim, dm_cell_type, pOrder, PETSC_DETERMINE, &cfe));
927472b9844SJames Wright     PetscCall(DMSetCoordinateDisc(*dm, cfe, PETSC_FALSE));
928472b9844SJames Wright     PetscCall(PetscFEDestroy(&cfe));
929472b9844SJames Wright 
930472b9844SJames Wright     { // Determine if coords are written in single or double precision
931472b9844SJames Wright       CGNS_ENUMT(DataType_t) datatype;
932472b9844SJames Wright 
933472b9844SJames Wright       PetscCallCGNS(cg_coord_info(cgid, B, z, 1, &datatype, buffer));
934472b9844SJames Wright       if (datatype == CGNS_ENUMV(RealDouble)) read_with_double = PETSC_TRUE;
935472b9844SJames Wright       else read_with_double = PETSC_TRUE;
936472b9844SJames Wright     }
937472b9844SJames Wright 
938472b9844SJames Wright     // Read coords from file and set into component-major ordering
939472b9844SJames Wright     if (read_with_double) PetscCall(PetscMalloc3(myownedv, &xd[0], myownedv, &xd[1], myownedv, &xd[2]));
940472b9844SJames Wright     else PetscCall(PetscMalloc3(myownedv, &x[0], myownedv, &x[1], myownedv, &x[2]));
941472b9844SJames Wright     PetscCall(PetscMalloc1(myownedv * coordDim, &coords));
942472b9844SJames Wright     {
943472b9844SJames Wright       cgsize_t sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
944472b9844SJames Wright       cgsize_t range_min[3] = {mystartv + 1, 1, 1};
945472b9844SJames Wright       cgsize_t range_max[3] = {myendv, 1, 1};
946472b9844SJames Wright       int      ngrids, ncoords;
947472b9844SJames Wright 
948472b9844SJames Wright       PetscCallCGNS(cg_zone_read(cgid, B, z, buffer, sizes));
949472b9844SJames Wright       PetscCallCGNS(cg_ngrids(cgid, B, z, &ngrids));
950472b9844SJames Wright       PetscCheck(ngrids <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single grid, not %d", ngrids);
951472b9844SJames Wright       PetscCallCGNS(cg_ncoords(cgid, B, z, &ncoords));
952472b9844SJames Wright       PetscCheck(ncoords == coordDim, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a coordinate array for each dimension, not %d", ncoords);
953472b9844SJames Wright       if (read_with_double) {
954472b9844SJames Wright         for (int d = 0; d < coordDim; ++d) PetscCallCGNS(cgp_coord_read_data(cgid, B, z, (d + 1), range_min, range_max, xd[d]));
955472b9844SJames Wright         if (coordDim >= 1) {
956472b9844SJames Wright           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 0] = xd[0][v];
957472b9844SJames Wright         }
958472b9844SJames Wright         if (coordDim >= 2) {
959472b9844SJames Wright           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 1] = xd[1][v];
960472b9844SJames Wright         }
961472b9844SJames Wright         if (coordDim >= 3) {
962472b9844SJames Wright           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 2] = xd[2][v];
963472b9844SJames Wright         }
964472b9844SJames Wright       } else {
965472b9844SJames Wright         for (int d = 0; d < coordDim; ++d) PetscCallCGNS(cgp_coord_read_data(cgid, 1, z, (d + 1), range_min, range_max, x[d]));
966472b9844SJames Wright         if (coordDim >= 1) {
967472b9844SJames Wright           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 0] = x[0][v];
968472b9844SJames Wright         }
969472b9844SJames Wright         if (coordDim >= 2) {
970472b9844SJames Wright           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 1] = x[1][v];
971472b9844SJames Wright         }
972472b9844SJames Wright         if (coordDim >= 3) {
973472b9844SJames Wright           for (PetscInt v = 0; v < myownedv; ++v) coords[v * coordDim + 2] = x[2][v];
974472b9844SJames Wright         }
975472b9844SJames Wright       }
976472b9844SJames Wright     }
977472b9844SJames Wright     if (read_with_double) PetscCall(PetscFree3(xd[0], xd[1], xd[2]));
978472b9844SJames Wright     else PetscCall(PetscFree3(x[0], x[1], x[2]));
979472b9844SJames Wright 
980472b9844SJames Wright     { // Reduce CGNS-ordered coordinate nodes to Plex ordering, and set DM's coordinates
981472b9844SJames Wright       Vec          coord_global;
982472b9844SJames Wright       MPI_Datatype unit;
983472b9844SJames Wright       PetscScalar *coord_global_array;
984472b9844SJames Wright       DM           cdm;
985472b9844SJames Wright 
986472b9844SJames Wright       PetscCall(DMGetCoordinateDM(*dm, &cdm));
987472b9844SJames Wright       PetscCall(DMCreateGlobalVector(cdm, &coord_global));
988472b9844SJames Wright       PetscCall(VecGetArrayWrite(coord_global, &coord_global_array));
989472b9844SJames Wright       PetscCallMPI(MPI_Type_contiguous(coordDim, MPIU_SCALAR, &unit));
990472b9844SJames Wright       PetscCallMPI(MPI_Type_commit(&unit));
991472b9844SJames Wright       PetscCall(PetscSFReduceBegin(plex_to_cgns_sf, unit, coords, coord_global_array, MPI_REPLACE));
992472b9844SJames Wright       PetscCall(PetscSFReduceEnd(plex_to_cgns_sf, unit, coords, coord_global_array, MPI_REPLACE));
993472b9844SJames Wright       PetscCall(VecRestoreArrayWrite(coord_global, &coord_global_array));
994472b9844SJames Wright       PetscCallMPI(MPI_Type_free(&unit));
995472b9844SJames Wright       PetscCall(DMSetCoordinates(*dm, coord_global));
996472b9844SJames Wright       PetscCall(VecDestroy(&coord_global));
997472b9844SJames Wright     }
998472b9844SJames Wright     PetscCall(PetscFree(coords));
999472b9844SJames Wright   }
1000472b9844SJames Wright 
1001472b9844SJames Wright   // -- Set sfNatural for solution vectors in CGNS file
1002472b9844SJames Wright   // NOTE: We set sfNatural to be the map between the original CGNS ordering of nodes and the Plex ordering of nodes.
1003472b9844SJames Wright   PetscCall(PetscSFViewFromOptions(plex_to_cgns_sf, NULL, "-sfNatural_init_view"));
1004472b9844SJames Wright   PetscCall(DMSetNaturalSF(*dm, plex_to_cgns_sf));
1005472b9844SJames Wright   PetscCall(DMSetUseNatural(*dm, PETSC_TRUE));
1006472b9844SJames Wright   PetscCall(PetscSFDestroy(&plex_to_cgns_sf));
1007472b9844SJames Wright 
1008472b9844SJames Wright   PetscCall(PetscLayoutDestroy(&elem_map));
1009472b9844SJames Wright   PetscCall(PetscLayoutDestroy(&vtx_map));
10103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10115f34f2dcSJed Brown }
10125f34f2dcSJed Brown 
10135f34f2dcSJed Brown // node_l2g must be freed
1014d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateNodeNumbering(DM dm, PetscInt *num_local_nodes, PetscInt *num_global_nodes, PetscInt *nStart, PetscInt *nEnd, const PetscInt **node_l2g)
1015d71ae5a4SJacob Faibussowitsch {
10165f34f2dcSJed Brown   PetscSection    local_section;
10175f34f2dcSJed Brown   PetscSF         point_sf;
10185f34f2dcSJed Brown   PetscInt        pStart, pEnd, spStart, spEnd, *points, nleaves, ncomp, *nodes;
10195f34f2dcSJed Brown   PetscMPIInt     comm_size;
10205f34f2dcSJed Brown   const PetscInt *ilocal, field = 0;
10215f34f2dcSJed Brown 
10225f34f2dcSJed Brown   PetscFunctionBegin;
10235f34f2dcSJed Brown   *num_local_nodes  = -1;
10245f34f2dcSJed Brown   *num_global_nodes = -1;
10255f34f2dcSJed Brown   *nStart           = -1;
10265f34f2dcSJed Brown   *nEnd             = -1;
10275f34f2dcSJed Brown   *node_l2g         = NULL;
10285f34f2dcSJed Brown 
10295f34f2dcSJed Brown   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &comm_size));
10305f34f2dcSJed Brown   PetscCall(DMGetLocalSection(dm, &local_section));
10315f34f2dcSJed Brown   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
10325f34f2dcSJed Brown   PetscCall(PetscSectionGetChart(local_section, &spStart, &spEnd));
10335f34f2dcSJed Brown   PetscCall(DMGetPointSF(dm, &point_sf));
10345f34f2dcSJed Brown   if (comm_size == 1) nleaves = 0;
10355f34f2dcSJed Brown   else PetscCall(PetscSFGetGraph(point_sf, NULL, &nleaves, &ilocal, NULL));
10365f34f2dcSJed Brown   PetscCall(PetscSectionGetFieldComponents(local_section, field, &ncomp));
10375f34f2dcSJed Brown 
10385f34f2dcSJed Brown   PetscInt local_node = 0, owned_node = 0, owned_start = 0;
10395f34f2dcSJed Brown   for (PetscInt p = spStart, leaf = 0; p < spEnd; p++) {
10405f34f2dcSJed Brown     PetscInt dof;
10415f34f2dcSJed Brown     PetscCall(PetscSectionGetFieldDof(local_section, p, field, &dof));
10425f34f2dcSJed Brown     PetscAssert(dof % ncomp == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field dof %" PetscInt_FMT " must be divisible by components %" PetscInt_FMT, dof, ncomp);
10435f34f2dcSJed Brown     local_node += dof / ncomp;
10445f34f2dcSJed Brown     if (leaf < nleaves && p == ilocal[leaf]) { // skip points owned by a different process
10455f34f2dcSJed Brown       leaf++;
10465f34f2dcSJed Brown     } else {
10475f34f2dcSJed Brown       owned_node += dof / ncomp;
10485f34f2dcSJed Brown     }
10495f34f2dcSJed Brown   }
10505f34f2dcSJed Brown   PetscCallMPI(MPI_Exscan(&owned_node, &owned_start, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)dm)));
10515f34f2dcSJed Brown   PetscCall(PetscMalloc1(pEnd - pStart, &points));
10525f34f2dcSJed Brown   owned_node = 0;
10535f34f2dcSJed Brown   for (PetscInt p = spStart, leaf = 0; p < spEnd; p++) {
10545f34f2dcSJed Brown     if (leaf < nleaves && p == ilocal[leaf]) { // skip points owned by a different process
10555f34f2dcSJed Brown       points[p - pStart] = -1;
10565f34f2dcSJed Brown       leaf++;
10575f34f2dcSJed Brown       continue;
10585f34f2dcSJed Brown     }
10595f34f2dcSJed Brown     PetscInt dof, offset;
10605f34f2dcSJed Brown     PetscCall(PetscSectionGetFieldDof(local_section, p, field, &dof));
10615f34f2dcSJed Brown     PetscCall(PetscSectionGetFieldOffset(local_section, p, field, &offset));
10625f34f2dcSJed Brown     PetscAssert(offset % ncomp == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field offset %" PetscInt_FMT " must be divisible by components %" PetscInt_FMT, offset, ncomp);
10635f34f2dcSJed Brown     points[p - pStart] = owned_start + owned_node;
10645f34f2dcSJed Brown     owned_node += dof / ncomp;
10655f34f2dcSJed Brown   }
10665f34f2dcSJed Brown   if (comm_size > 1) {
10675f34f2dcSJed Brown     PetscCall(PetscSFBcastBegin(point_sf, MPIU_INT, points, points, MPI_REPLACE));
10685f34f2dcSJed Brown     PetscCall(PetscSFBcastEnd(point_sf, MPIU_INT, points, points, MPI_REPLACE));
10695f34f2dcSJed Brown   }
10705f34f2dcSJed Brown 
10715f34f2dcSJed Brown   // Set up global indices for each local node
10725f34f2dcSJed Brown   PetscCall(PetscMalloc1(local_node, &nodes));
10735f34f2dcSJed Brown   for (PetscInt p = spStart; p < spEnd; p++) {
10745f34f2dcSJed Brown     PetscInt dof, offset;
10755f34f2dcSJed Brown     PetscCall(PetscSectionGetFieldDof(local_section, p, field, &dof));
10765f34f2dcSJed Brown     PetscCall(PetscSectionGetFieldOffset(local_section, p, field, &offset));
10775f34f2dcSJed Brown     for (PetscInt n = 0; n < dof / ncomp; n++) nodes[offset / ncomp + n] = points[p - pStart] + n;
10785f34f2dcSJed Brown   }
10795f34f2dcSJed Brown   PetscCall(PetscFree(points));
10805f34f2dcSJed Brown   *num_local_nodes = local_node;
10815f34f2dcSJed Brown   *nStart          = owned_start;
10825f34f2dcSJed Brown   *nEnd            = owned_start + owned_node;
1083462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&owned_node, num_global_nodes, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)dm)));
10845f34f2dcSJed Brown   *node_l2g = nodes;
10853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10865f34f2dcSJed Brown }
10875f34f2dcSJed Brown 
1088d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView_PlexCGNS(DM dm, PetscViewer viewer)
1089d71ae5a4SJacob Faibussowitsch {
10905f34f2dcSJed Brown   PetscViewer_CGNS *cgv = (PetscViewer_CGNS *)viewer->data;
109144698e90SJames Wright   PetscInt          fvGhostStart;
10925f34f2dcSJed Brown   PetscInt          topo_dim, coord_dim, num_global_elems;
10935f34f2dcSJed Brown   PetscInt          cStart, cEnd, num_local_nodes, num_global_nodes, nStart, nEnd;
10945f34f2dcSJed Brown   const PetscInt   *node_l2g;
10955f34f2dcSJed Brown   Vec               coord;
1096b85bf5edSJed Brown   DM                colloc_dm, cdm;
10975f34f2dcSJed Brown   PetscMPIInt       size;
10985f34f2dcSJed Brown   const char       *dm_name;
10995f34f2dcSJed Brown   int               base, zone;
11005f34f2dcSJed Brown   cgsize_t          isize[3];
11015f34f2dcSJed Brown 
11025f34f2dcSJed Brown   PetscFunctionBegin;
110325760affSJed Brown   if (!cgv->file_num) {
110425760affSJed Brown     PetscInt time_step;
110525760affSJed Brown     PetscCall(DMGetOutputSequenceNumber(dm, &time_step, NULL));
110625760affSJed Brown     PetscCall(PetscViewerCGNSFileOpen_Internal(viewer, time_step));
110725760affSJed Brown   }
11085f34f2dcSJed Brown   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
11095f34f2dcSJed Brown   PetscCall(DMGetDimension(dm, &topo_dim));
11105f34f2dcSJed Brown   PetscCall(DMGetCoordinateDim(dm, &coord_dim));
11115f34f2dcSJed Brown   PetscCall(PetscObjectGetName((PetscObject)dm, &dm_name));
11125f34f2dcSJed Brown   PetscCallCGNS(cg_base_write(cgv->file_num, dm_name, topo_dim, coord_dim, &base));
11135f34f2dcSJed Brown   PetscCallCGNS(cg_goto(cgv->file_num, base, NULL));
11145f34f2dcSJed Brown   PetscCallCGNS(cg_dataclass_write(CGNS_ENUMV(NormalizedByDimensional)));
11155f34f2dcSJed Brown 
1116b85bf5edSJed Brown   {
1117b85bf5edSJed Brown     PetscFE        fe, fe_coord;
11189bb8f83bSJed Brown     PetscClassId   ds_id;
1119b85bf5edSJed Brown     PetscDualSpace dual_space, dual_space_coord;
11202d1fc720SJed Brown     PetscInt       num_fields, field_order = -1, field_order_coord;
1121b85bf5edSJed Brown     PetscBool      is_simplex;
11225b8b2c14SJed Brown     PetscCall(DMGetNumFields(dm, &num_fields));
11239bb8f83bSJed Brown     if (num_fields > 0) {
11249bb8f83bSJed Brown       PetscCall(DMGetField(dm, 0, NULL, (PetscObject *)&fe));
11259bb8f83bSJed Brown       PetscCall(PetscObjectGetClassId((PetscObject)fe, &ds_id));
11262d1fc720SJed Brown       if (ds_id != PETSCFE_CLASSID) {
11272d1fc720SJed Brown         fe = NULL;
11282d1fc720SJed Brown         if (ds_id == PETSCFV_CLASSID) field_order = -1; // use whatever is present for coords; field will be CellCenter
11292d1fc720SJed Brown         else field_order = 1;                           // assume vertex-based linear elements
11302d1fc720SJed Brown       }
11319bb8f83bSJed Brown     } else fe = NULL;
1132b85bf5edSJed Brown     if (fe) {
1133b85bf5edSJed Brown       PetscCall(PetscFEGetDualSpace(fe, &dual_space));
1134b85bf5edSJed Brown       PetscCall(PetscDualSpaceGetOrder(dual_space, &field_order));
11352d1fc720SJed Brown     }
11365f34f2dcSJed Brown     PetscCall(DMGetCoordinateDM(dm, &cdm));
1137b85bf5edSJed Brown     PetscCall(DMGetField(cdm, 0, NULL, (PetscObject *)&fe_coord));
11389bb8f83bSJed Brown     {
11399bb8f83bSJed Brown       PetscClassId id;
11409bb8f83bSJed Brown       PetscCall(PetscObjectGetClassId((PetscObject)fe_coord, &id));
11419bb8f83bSJed Brown       if (id != PETSCFE_CLASSID) fe_coord = NULL;
11429bb8f83bSJed Brown     }
1143b85bf5edSJed Brown     if (fe_coord) {
1144b85bf5edSJed Brown       PetscCall(PetscFEGetDualSpace(fe_coord, &dual_space_coord));
1145b85bf5edSJed Brown       PetscCall(PetscDualSpaceGetOrder(dual_space_coord, &field_order_coord));
1146b85bf5edSJed Brown     } else field_order_coord = 1;
11472d1fc720SJed Brown     if (field_order > 0 && field_order != field_order_coord) {
1148b85bf5edSJed Brown       PetscInt quadrature_order = field_order;
1149b85bf5edSJed Brown       PetscCall(DMClone(dm, &colloc_dm));
11507d4eb7abSJed Brown       { // Inform the new colloc_dm that it is a coordinate DM so isoperiodic affine corrections can be applied
11511fca310dSJames Wright         const PetscSF *face_sfs;
11521fca310dSJames Wright         PetscInt       num_face_sfs;
11531fca310dSJames Wright         PetscCall(DMPlexGetIsoperiodicFaceSF(dm, &num_face_sfs, &face_sfs));
11541fca310dSJames Wright         PetscCall(DMPlexSetIsoperiodicFaceSF(colloc_dm, num_face_sfs, (PetscSF *)face_sfs));
11551fca310dSJames Wright         if (face_sfs) colloc_dm->periodic.setup = DMPeriodicCoordinateSetUp_Internal;
11567d4eb7abSJed Brown       }
1157b85bf5edSJed Brown       PetscCall(DMPlexIsSimplex(dm, &is_simplex));
1158b85bf5edSJed Brown       PetscCall(PetscFECreateLagrange(PetscObjectComm((PetscObject)dm), topo_dim, coord_dim, is_simplex, field_order, quadrature_order, &fe));
1159e44f6aebSMatthew G. Knepley       PetscCall(DMSetCoordinateDisc(colloc_dm, fe, PETSC_TRUE));
1160b85bf5edSJed Brown       PetscCall(PetscFEDestroy(&fe));
1161b85bf5edSJed Brown     } else {
1162b85bf5edSJed Brown       PetscCall(PetscObjectReference((PetscObject)dm));
1163b85bf5edSJed Brown       colloc_dm = dm;
1164b85bf5edSJed Brown     }
1165b85bf5edSJed Brown   }
1166b85bf5edSJed Brown   PetscCall(DMGetCoordinateDM(colloc_dm, &cdm));
11675f34f2dcSJed Brown   PetscCall(DMPlexCreateNodeNumbering(cdm, &num_local_nodes, &num_global_nodes, &nStart, &nEnd, &node_l2g));
1168b85bf5edSJed Brown   PetscCall(DMGetCoordinatesLocal(colloc_dm, &coord));
11695f34f2dcSJed Brown   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
117044698e90SJames Wright   PetscCall(DMPlexGetCellTypeStratum(dm, DM_POLYTOPE_FV_GHOST, &fvGhostStart, NULL));
117144698e90SJames Wright   if (fvGhostStart >= 0) cEnd = fvGhostStart;
11725f34f2dcSJed Brown   num_global_elems = cEnd - cStart;
1173462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &num_global_elems, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)dm)));
11745f34f2dcSJed Brown   isize[0] = num_global_nodes;
11755f34f2dcSJed Brown   isize[1] = num_global_elems;
11765f34f2dcSJed Brown   isize[2] = 0;
11775f34f2dcSJed Brown   PetscCallCGNS(cg_zone_write(cgv->file_num, base, "Zone", isize, CGNS_ENUMV(Unstructured), &zone));
11785f34f2dcSJed Brown 
11795f34f2dcSJed Brown   {
11805f34f2dcSJed Brown     const PetscScalar *X;
11815f34f2dcSJed Brown     PetscScalar       *x;
11825f34f2dcSJed Brown     int                coord_ids[3];
11835f34f2dcSJed Brown 
11845f34f2dcSJed Brown     PetscCall(VecGetArrayRead(coord, &X));
11855f34f2dcSJed Brown     for (PetscInt d = 0; d < coord_dim; d++) {
11865f34f2dcSJed Brown       const double exponents[] = {0, 1, 0, 0, 0};
11875f34f2dcSJed Brown       char         coord_name[64];
11885f34f2dcSJed Brown       PetscCall(PetscSNPrintf(coord_name, sizeof coord_name, "Coordinate%c", 'X' + (int)d));
11895f34f2dcSJed Brown       PetscCallCGNS(cgp_coord_write(cgv->file_num, base, zone, CGNS_ENUMV(RealDouble), coord_name, &coord_ids[d]));
11905f34f2dcSJed Brown       PetscCallCGNS(cg_goto(cgv->file_num, base, "Zone_t", zone, "GridCoordinates", 0, coord_name, 0, NULL));
11915f34f2dcSJed Brown       PetscCallCGNS(cg_exponents_write(CGNS_ENUMV(RealDouble), exponents));
11925f34f2dcSJed Brown     }
11935f34f2dcSJed Brown 
11945f34f2dcSJed Brown     int        section;
11955f34f2dcSJed Brown     cgsize_t   e_owned, e_global, e_start, *conn = NULL;
11965f34f2dcSJed Brown     const int *perm;
1197e853fb4cSJames Wright     CGNS_ENUMT(ElementType_t) element_type = CGNS_ENUMV(ElementTypeNull);
11985f34f2dcSJed Brown     {
11995f34f2dcSJed Brown       PetscCall(PetscMalloc1(nEnd - nStart, &x));
12005f34f2dcSJed Brown       for (PetscInt d = 0; d < coord_dim; d++) {
12015f34f2dcSJed Brown         for (PetscInt n = 0; n < num_local_nodes; n++) {
12025f34f2dcSJed Brown           PetscInt gn = node_l2g[n];
12035f34f2dcSJed Brown           if (gn < nStart || nEnd <= gn) continue;
12045f34f2dcSJed Brown           x[gn - nStart] = X[n * coord_dim + d];
12055f34f2dcSJed Brown         }
12065f34f2dcSJed Brown         // CGNS nodes use 1-based indexing
12075f34f2dcSJed Brown         cgsize_t start = nStart + 1, end = nEnd;
12085f34f2dcSJed Brown         PetscCallCGNS(cgp_coord_write_data(cgv->file_num, base, zone, coord_ids[d], &start, &end, x));
12095f34f2dcSJed Brown       }
12105f34f2dcSJed Brown       PetscCall(PetscFree(x));
12115f34f2dcSJed Brown       PetscCall(VecRestoreArrayRead(coord, &X));
12125f34f2dcSJed Brown     }
12135f34f2dcSJed Brown 
121459191b1eSJames Wright     e_owned = cEnd - cStart;
121544698e90SJames Wright     if (e_owned > 0) {
121644698e90SJames Wright       DMPolytopeType cell_type;
121744698e90SJames Wright 
121844698e90SJames Wright       PetscCall(DMPlexGetCellType(dm, cStart, &cell_type));
12195f34f2dcSJed Brown       for (PetscInt i = cStart, c = 0; i < cEnd; i++) {
12205f34f2dcSJed Brown         PetscInt closure_dof, *closure_indices, elem_size;
122144698e90SJames Wright 
12225f34f2dcSJed Brown         PetscCall(DMPlexGetClosureIndices(cdm, cdm->localSection, cdm->localSection, i, PETSC_FALSE, &closure_dof, &closure_indices, NULL, NULL));
12235f34f2dcSJed Brown         elem_size = closure_dof / coord_dim;
122444698e90SJames Wright         if (!conn) PetscCall(PetscMalloc1(e_owned * elem_size, &conn));
12255f34f2dcSJed Brown         PetscCall(DMPlexCGNSGetPermutation_Internal(cell_type, closure_dof / coord_dim, &element_type, &perm));
1226ad540459SPierre Jolivet         for (PetscInt j = 0; j < elem_size; j++) conn[c++] = node_l2g[closure_indices[perm[j] * coord_dim] / coord_dim] + 1;
12275f34f2dcSJed Brown         PetscCall(DMPlexRestoreClosureIndices(cdm, cdm->localSection, cdm->localSection, i, PETSC_FALSE, &closure_dof, &closure_indices, NULL, NULL));
12285f34f2dcSJed Brown       }
122944698e90SJames Wright     }
123044698e90SJames Wright 
123159191b1eSJames Wright     { // Get global element_type (for ranks that do not have owned elements)
123259191b1eSJames Wright       PetscInt local_element_type, global_element_type;
123359191b1eSJames Wright 
123459191b1eSJames Wright       local_element_type = e_owned > 0 ? element_type : -1;
1235462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&local_element_type, &global_element_type, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)viewer)));
123659191b1eSJames Wright       if (local_element_type != -1) PetscCheck(local_element_type == global_element_type, PETSC_COMM_SELF, PETSC_ERR_SUP, "Ranks with different element types not supported");
1237*ca328833SJames Wright       element_type = (CGNS_ENUMT(ElementType_t))global_element_type;
123859191b1eSJames Wright     }
1239462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&e_owned, &e_global, 1, MPIU_CGSIZE, MPI_SUM, PetscObjectComm((PetscObject)dm)));
12401fb9530eSJeongu Kim     PetscCheck(e_global == num_global_elems, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected number of elements %" PRIdCGSIZE " vs %" PetscInt_FMT, e_global, num_global_elems);
12415f34f2dcSJed Brown     e_start = 0;
12421fb9530eSJeongu Kim     PetscCallMPI(MPI_Exscan(&e_owned, &e_start, 1, MPIU_CGSIZE, MPI_SUM, PetscObjectComm((PetscObject)dm)));
12435f34f2dcSJed Brown     PetscCallCGNS(cgp_section_write(cgv->file_num, base, zone, "Elem", element_type, 1, e_global, 0, &section));
12445f34f2dcSJed Brown     PetscCallCGNS(cgp_elements_write_data(cgv->file_num, base, zone, section, e_start + 1, e_start + e_owned, conn));
12455f34f2dcSJed Brown     PetscCall(PetscFree(conn));
12465f34f2dcSJed Brown 
12475f34f2dcSJed Brown     cgv->base            = base;
12485f34f2dcSJed Brown     cgv->zone            = zone;
12495f34f2dcSJed Brown     cgv->node_l2g        = node_l2g;
12505f34f2dcSJed Brown     cgv->num_local_nodes = num_local_nodes;
12515f34f2dcSJed Brown     cgv->nStart          = nStart;
12525f34f2dcSJed Brown     cgv->nEnd            = nEnd;
12539bb8f83bSJed Brown     cgv->eStart          = e_start;
12549bb8f83bSJed Brown     cgv->eEnd            = e_start + e_owned;
12555f34f2dcSJed Brown     if (1) {
12565f34f2dcSJed Brown       PetscMPIInt rank;
12575f34f2dcSJed Brown       int        *efield;
12585f34f2dcSJed Brown       int         sol, field;
12595f34f2dcSJed Brown       DMLabel     label;
12605f34f2dcSJed Brown       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
12615f34f2dcSJed Brown       PetscCall(PetscMalloc1(e_owned, &efield));
12625f34f2dcSJed Brown       for (PetscInt i = 0; i < e_owned; i++) efield[i] = rank;
12635f34f2dcSJed Brown       PetscCallCGNS(cg_sol_write(cgv->file_num, base, zone, "CellInfo", CGNS_ENUMV(CellCenter), &sol));
12645f34f2dcSJed Brown       PetscCallCGNS(cgp_field_write(cgv->file_num, base, zone, sol, CGNS_ENUMV(Integer), "Rank", &field));
12655f34f2dcSJed Brown       cgsize_t start = e_start + 1, end = e_start + e_owned;
12665f34f2dcSJed Brown       PetscCallCGNS(cgp_field_write_data(cgv->file_num, base, zone, sol, field, &start, &end, efield));
12675f34f2dcSJed Brown       PetscCall(DMGetLabel(dm, "Cell Sets", &label));
12685f34f2dcSJed Brown       if (label) {
12695f34f2dcSJed Brown         for (PetscInt c = cStart; c < cEnd; c++) {
12705f34f2dcSJed Brown           PetscInt value;
12715f34f2dcSJed Brown           PetscCall(DMLabelGetValue(label, c, &value));
12725f34f2dcSJed Brown           efield[c - cStart] = value;
12735f34f2dcSJed Brown         }
12745f34f2dcSJed Brown         PetscCallCGNS(cgp_field_write(cgv->file_num, base, zone, sol, CGNS_ENUMV(Integer), "CellSet", &field));
12755f34f2dcSJed Brown         PetscCallCGNS(cgp_field_write_data(cgv->file_num, base, zone, sol, field, &start, &end, efield));
12765f34f2dcSJed Brown       }
12775f34f2dcSJed Brown       PetscCall(PetscFree(efield));
12785f34f2dcSJed Brown     }
12795f34f2dcSJed Brown   }
1280b85bf5edSJed Brown   PetscCall(DMDestroy(&colloc_dm));
12813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12825f34f2dcSJed Brown }
12835f34f2dcSJed Brown 
1284d71ae5a4SJacob Faibussowitsch PetscErrorCode VecView_Plex_Local_CGNS(Vec V, PetscViewer viewer)
1285d71ae5a4SJacob Faibussowitsch {
12865f34f2dcSJed Brown   PetscViewer_CGNS  *cgv = (PetscViewer_CGNS *)viewer->data;
12875f34f2dcSJed Brown   DM                 dm;
12885f34f2dcSJed Brown   PetscSection       section;
128944698e90SJames Wright   PetscInt           time_step, num_fields, pStart, pEnd, fvGhostStart;
12905f34f2dcSJed Brown   PetscReal          time, *time_slot;
12919812b6beSJed Brown   size_t            *step_slot;
12925f34f2dcSJed Brown   const PetscScalar *v;
12935f34f2dcSJed Brown   char               solution_name[PETSC_MAX_PATH_LEN];
12945f34f2dcSJed Brown   int                sol;
12955f34f2dcSJed Brown 
12965f34f2dcSJed Brown   PetscFunctionBegin;
12975f34f2dcSJed Brown   PetscCall(VecGetDM(V, &dm));
1298ec2db9e4SJames Wright   PetscCall(DMGetLocalSection(dm, &section));
1299ec2db9e4SJames Wright   PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
130044698e90SJames Wright   PetscCall(DMPlexGetCellTypeStratum(dm, DM_POLYTOPE_FV_GHOST, &fvGhostStart, NULL));
130144698e90SJames Wright   if (fvGhostStart >= 0) pEnd = fvGhostStart;
1302ec2db9e4SJames Wright 
13035f34f2dcSJed Brown   if (!cgv->node_l2g) PetscCall(DMView(dm, viewer));
1304ec2db9e4SJames Wright   if (!cgv->grid_loc) { // Determine if writing to cell-centers or to nodes
1305ec2db9e4SJames Wright     PetscInt cStart, cEnd;
1306ec2db9e4SJames Wright     PetscInt local_grid_loc, global_grid_loc;
1307ec2db9e4SJames Wright 
1308ec2db9e4SJames Wright     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
130944698e90SJames Wright     if (fvGhostStart >= 0) cEnd = fvGhostStart;
1310ec2db9e4SJames Wright     if (cgv->num_local_nodes == 0) local_grid_loc = -1;
1311ec2db9e4SJames Wright     else if (cStart == pStart && cEnd == pEnd) local_grid_loc = CGNS_ENUMV(CellCenter);
1312ec2db9e4SJames Wright     else local_grid_loc = CGNS_ENUMV(Vertex);
1313ec2db9e4SJames Wright 
1314462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&local_grid_loc, &global_grid_loc, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)viewer)));
1315ec2db9e4SJames Wright     if (local_grid_loc != -1)
1316ec2db9e4SJames Wright       PetscCheck(local_grid_loc == global_grid_loc, PETSC_COMM_SELF, PETSC_ERR_SUP, "Ranks with different grid locations not supported. Local has %" PetscInt_FMT ", allreduce returned %" PetscInt_FMT, local_grid_loc, global_grid_loc);
1317ec2db9e4SJames Wright     PetscCheck((global_grid_loc == CGNS_ENUMV(CellCenter)) || (global_grid_loc == CGNS_ENUMV(Vertex)), PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Grid location should only be CellCenter (%d) or Vertex(%d), but have %" PetscInt_FMT, CGNS_ENUMV(CellCenter), CGNS_ENUMV(Vertex), global_grid_loc);
1318*ca328833SJames Wright     cgv->grid_loc = (CGNS_ENUMT(GridLocation_t))global_grid_loc;
1319ec2db9e4SJames Wright   }
1320ec2db9e4SJames Wright   if (!cgv->nodal_field) {
1321ec2db9e4SJames Wright     switch (cgv->grid_loc) {
1322ec2db9e4SJames Wright     case CGNS_ENUMV(Vertex): {
1323ec2db9e4SJames Wright       PetscCall(PetscMalloc1(cgv->nEnd - cgv->nStart, &cgv->nodal_field));
1324ec2db9e4SJames Wright     } break;
1325ec2db9e4SJames Wright     case CGNS_ENUMV(CellCenter): {
1326ec2db9e4SJames Wright       PetscCall(PetscMalloc1(cgv->eEnd - cgv->eStart, &cgv->nodal_field));
1327ec2db9e4SJames Wright     } break;
1328ec2db9e4SJames Wright     default:
1329ec2db9e4SJames Wright       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Can only write for Vertex and CellCenter grid locations");
1330ec2db9e4SJames Wright     }
1331ec2db9e4SJames Wright   }
13325f34f2dcSJed Brown   if (!cgv->output_times) PetscCall(PetscSegBufferCreate(sizeof(PetscReal), 20, &cgv->output_times));
13339812b6beSJed Brown   if (!cgv->output_steps) PetscCall(PetscSegBufferCreate(sizeof(size_t), 20, &cgv->output_steps));
13345f34f2dcSJed Brown 
13355f34f2dcSJed Brown   PetscCall(DMGetOutputSequenceNumber(dm, &time_step, &time));
13369371c9d4SSatish Balay   if (time_step < 0) {
13379371c9d4SSatish Balay     time_step = 0;
13389371c9d4SSatish Balay     time      = 0.;
13399371c9d4SSatish Balay   }
13405f34f2dcSJed Brown   PetscCall(PetscSegBufferGet(cgv->output_times, 1, &time_slot));
13415f34f2dcSJed Brown   *time_slot = time;
13429812b6beSJed Brown   PetscCall(PetscSegBufferGet(cgv->output_steps, 1, &step_slot));
13439812b6beSJed Brown   *step_slot = time_step;
13445f34f2dcSJed Brown   PetscCall(PetscSNPrintf(solution_name, sizeof solution_name, "FlowSolution%" PetscInt_FMT, time_step));
1345ec2db9e4SJames Wright   PetscCallCGNS(cg_sol_write(cgv->file_num, cgv->base, cgv->zone, solution_name, cgv->grid_loc, &sol));
13465f34f2dcSJed Brown   PetscCall(VecGetArrayRead(V, &v));
134700a86070SJed Brown   PetscCall(PetscSectionGetNumFields(section, &num_fields));
134800a86070SJed Brown   for (PetscInt field = 0; field < num_fields; field++) {
134900a86070SJed Brown     PetscInt    ncomp;
13509bb8f83bSJed Brown     const char *field_name;
13519bb8f83bSJed Brown     PetscCall(PetscSectionGetFieldName(section, field, &field_name));
135200a86070SJed Brown     PetscCall(PetscSectionGetFieldComponents(section, field, &ncomp));
13535f34f2dcSJed Brown     for (PetscInt comp = 0; comp < ncomp; comp++) {
13545f34f2dcSJed Brown       int         cgfield;
13555f34f2dcSJed Brown       const char *comp_name;
13569bb8f83bSJed Brown       char        cgns_field_name[32]; // CGNS max field name is 32
13575f34f2dcSJed Brown       CGNS_ENUMT(DataType_t) datatype;
13585f34f2dcSJed Brown       PetscCall(PetscSectionGetComponentName(section, field, comp, &comp_name));
135944698e90SJames Wright       if (ncomp == 1 && comp_name[0] == '0' && comp_name[1] == '\0' && field_name[0] != '\0') PetscCall(PetscStrncpy(cgns_field_name, field_name, sizeof cgns_field_name));
13609bb8f83bSJed Brown       else if (field_name[0] == '\0') PetscCall(PetscStrncpy(cgns_field_name, comp_name, sizeof cgns_field_name));
13619bb8f83bSJed Brown       else PetscCall(PetscSNPrintf(cgns_field_name, sizeof cgns_field_name, "%s.%s", field_name, comp_name));
13625f34f2dcSJed Brown       PetscCall(PetscCGNSDataType(PETSC_SCALAR, &datatype));
13639bb8f83bSJed Brown       PetscCallCGNS(cgp_field_write(cgv->file_num, cgv->base, cgv->zone, sol, datatype, cgns_field_name, &cgfield));
136400a86070SJed Brown       for (PetscInt p = pStart, n = 0; p < pEnd; p++) {
136500a86070SJed Brown         PetscInt off, dof;
136600a86070SJed Brown         PetscCall(PetscSectionGetFieldDof(section, p, field, &dof));
136700a86070SJed Brown         if (dof == 0) continue;
136800a86070SJed Brown         PetscCall(PetscSectionGetFieldOffset(section, p, field, &off));
136900a86070SJed Brown         for (PetscInt c = comp; c < dof; c += ncomp, n++) {
1370ec2db9e4SJames Wright           switch (cgv->grid_loc) {
13719bb8f83bSJed Brown           case CGNS_ENUMV(Vertex): {
13725f34f2dcSJed Brown             PetscInt gn = cgv->node_l2g[n];
13735f34f2dcSJed Brown             if (gn < cgv->nStart || cgv->nEnd <= gn) continue;
137400a86070SJed Brown             cgv->nodal_field[gn - cgv->nStart] = v[off + c];
13759bb8f83bSJed Brown           } break;
13769bb8f83bSJed Brown           case CGNS_ENUMV(CellCenter): {
13779bb8f83bSJed Brown             cgv->nodal_field[n] = v[off + c];
13789bb8f83bSJed Brown           } break;
13799bb8f83bSJed Brown           default:
13809bb8f83bSJed Brown             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Can only pack for Vertex and CellCenter grid locations");
13819bb8f83bSJed Brown           }
138200a86070SJed Brown         }
13835f34f2dcSJed Brown       }
13845f34f2dcSJed Brown       // CGNS nodes use 1-based indexing
1385ec2db9e4SJames Wright       cgsize_t start, end;
1386ec2db9e4SJames Wright       switch (cgv->grid_loc) {
1387ec2db9e4SJames Wright       case CGNS_ENUMV(Vertex): {
1388ec2db9e4SJames Wright         start = cgv->nStart + 1;
1389ec2db9e4SJames Wright         end   = cgv->nEnd;
1390ec2db9e4SJames Wright       } break;
1391ec2db9e4SJames Wright       case CGNS_ENUMV(CellCenter): {
13929bb8f83bSJed Brown         start = cgv->eStart + 1;
13939bb8f83bSJed Brown         end   = cgv->eEnd;
1394ec2db9e4SJames Wright       } break;
1395ec2db9e4SJames Wright       default:
1396ec2db9e4SJames Wright         SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Can only write for Vertex and CellCenter grid locations");
13979bb8f83bSJed Brown       }
13985f34f2dcSJed Brown       PetscCallCGNS(cgp_field_write_data(cgv->file_num, cgv->base, cgv->zone, sol, cgfield, &start, &end, cgv->nodal_field));
13995f34f2dcSJed Brown     }
140000a86070SJed Brown   }
14015f34f2dcSJed Brown   PetscCall(VecRestoreArrayRead(V, &v));
140225760affSJed Brown   PetscCall(PetscViewerCGNSCheckBatch_Internal(viewer));
14033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14045f34f2dcSJed Brown }
1405472b9844SJames Wright 
1406472b9844SJames Wright PetscErrorCode VecLoad_Plex_CGNS_Internal(Vec V, PetscViewer viewer)
1407472b9844SJames Wright {
1408472b9844SJames Wright   MPI_Comm          comm;
1409472b9844SJames Wright   char              buffer[CGIO_MAX_NAME_LENGTH + 1];
1410472b9844SJames Wright   PetscViewer_CGNS *cgv                 = (PetscViewer_CGNS *)viewer->data;
1411472b9844SJames Wright   int               cgid                = cgv->file_num;
1412472b9844SJames Wright   PetscBool         use_parallel_viewer = PETSC_FALSE;
1413472b9844SJames Wright   int               z                   = 1; // Only support one zone
1414472b9844SJames Wright   int               B                   = 1; // Only support one base
1415472b9844SJames Wright   int               numComp;
1416472b9844SJames Wright   PetscInt          V_numComps, mystartv, myendv, myownedv;
1417472b9844SJames Wright 
1418472b9844SJames Wright   PetscFunctionBeginUser;
1419472b9844SJames Wright   PetscCall(PetscObjectGetComm((PetscObject)V, &comm));
1420472b9844SJames Wright 
1421472b9844SJames Wright   PetscCall(PetscOptionsGetBool(NULL, NULL, "-dm_plex_cgns_parallel", &use_parallel_viewer, NULL));
1422472b9844SJames Wright   PetscCheck(use_parallel_viewer, comm, PETSC_ERR_USER_INPUT, "Cannot use VecLoad with CGNS file in serial reader; use -dm_plex_cgns_parallel to enable parallel reader");
1423472b9844SJames Wright 
1424472b9844SJames Wright   { // Get CGNS node ownership information
1425472b9844SJames Wright     int         nbases, nzones;
1426472b9844SJames Wright     PetscInt    NVertices;
1427472b9844SJames Wright     PetscLayout vtx_map;
1428472b9844SJames Wright     cgsize_t    sizes[3]; /* Number of vertices, number of cells, number of boundary vertices */
1429472b9844SJames Wright 
1430472b9844SJames Wright     PetscCallCGNS(cg_nbases(cgid, &nbases));
1431472b9844SJames Wright     PetscCheck(nbases <= 1, PETSC_COMM_SELF, PETSC_ERR_LIB, "CGNS file must have a single base, not %d", nbases);
1432472b9844SJames Wright     PetscCallCGNS(cg_nzones(cgid, B, &nzones));
1433472b9844SJames Wright     PetscCheck(nzones == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "limited to one zone %d", (int)nzones);
1434472b9844SJames Wright 
1435472b9844SJames Wright     PetscCallCGNS(cg_zone_read(cgid, B, z, buffer, sizes));
1436472b9844SJames Wright     NVertices = sizes[0];
1437472b9844SJames Wright 
1438472b9844SJames Wright     PetscCall(PetscLayoutCreateFromSizes(comm, PETSC_DECIDE, NVertices, 1, &vtx_map));
1439472b9844SJames Wright     PetscCall(PetscLayoutGetRange(vtx_map, &mystartv, &myendv));
1440472b9844SJames Wright     PetscCall(PetscLayoutGetLocalSize(vtx_map, &myownedv));
1441472b9844SJames Wright     PetscCall(PetscLayoutDestroy(&vtx_map));
1442472b9844SJames Wright   }
1443472b9844SJames Wright 
1444472b9844SJames Wright   { // -- Read data from file into Vec
1445472b9844SJames Wright     PetscScalar *fields = NULL;
1446472b9844SJames Wright     PetscSF      sfNatural;
1447472b9844SJames Wright 
1448472b9844SJames Wright     { // Check compatibility between sfNatural and the data source and sink
1449472b9844SJames Wright       DM       dm;
1450472b9844SJames Wright       PetscInt nleaves, nroots, V_local_size;
1451472b9844SJames Wright 
1452472b9844SJames Wright       PetscCall(VecGetDM(V, &dm));
1453472b9844SJames Wright       PetscCall(DMGetNaturalSF(dm, &sfNatural));
1454472b9844SJames Wright       PetscCheck(sfNatural, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM of Vec must have sfNatural");
1455472b9844SJames Wright       PetscCall(PetscSFGetGraph(sfNatural, &nroots, &nleaves, NULL, NULL));
1456472b9844SJames Wright       PetscCall(VecGetLocalSize(V, &V_local_size));
1457472b9844SJames Wright       PetscCheck(nleaves == myownedv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Number of locally owned vertices (% " PetscInt_FMT ") must match number of leaves in sfNatural (% " PetscInt_FMT ")", myownedv, nleaves);
1458472b9844SJames Wright       PetscCheck(V_local_size % nroots == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Local Vec size (% " PetscInt_FMT ") not evenly divisible by number of roots in sfNatural (% " PetscInt_FMT ")", V_local_size, nroots);
1459472b9844SJames Wright       V_numComps = V_local_size / nroots;
1460472b9844SJames Wright     }
1461472b9844SJames Wright 
1462472b9844SJames Wright     { // Read data into component-major ordering
1463472b9844SJames Wright       int isol, numSols;
1464472b9844SJames Wright       CGNS_ENUMT(DataType_t) datatype;
1465472b9844SJames Wright       double *fields_CGNS;
1466472b9844SJames Wright 
1467472b9844SJames Wright       PetscCallCGNS(cg_nsols(cgid, B, z, &numSols));
1468472b9844SJames Wright       PetscCall(PetscViewerCGNSGetSolutionFileIndex_Internal(viewer, &isol));
1469472b9844SJames Wright       PetscCallCGNS(cg_nfields(cgid, B, z, isol, &numComp));
1470472b9844SJames Wright       PetscCheck(V_numComps == numComp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Vec sized for  % " PetscInt_FMT " components per node, but file has %d components per node", V_numComps, numComp);
1471472b9844SJames Wright 
1472472b9844SJames Wright       cgsize_t range_min[3] = {mystartv + 1, 1, 1};
1473472b9844SJames Wright       cgsize_t range_max[3] = {myendv, 1, 1};
1474472b9844SJames Wright       PetscCall(PetscMalloc1(myownedv * numComp, &fields_CGNS));
1475472b9844SJames Wright       PetscCall(PetscMalloc1(myownedv * numComp, &fields));
1476472b9844SJames Wright       for (int d = 0; d < numComp; ++d) {
1477472b9844SJames Wright         PetscCallCGNS(cg_field_info(cgid, B, z, isol, (d + 1), &datatype, buffer));
1478472b9844SJames Wright         PetscCheck(datatype == CGNS_ENUMV(RealDouble), PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMETYPE, "Field %s in file is not of type double", buffer);
1479472b9844SJames Wright         PetscCallCGNS(cgp_field_read_data(cgid, B, z, isol, (d + 1), range_min, range_max, &fields_CGNS[d * myownedv]));
1480472b9844SJames Wright       }
1481472b9844SJames Wright       for (int d = 0; d < numComp; ++d) {
1482472b9844SJames Wright         for (PetscInt v = 0; v < myownedv; ++v) fields[v * numComp + d] = fields_CGNS[d * myownedv + v];
1483472b9844SJames Wright       }
1484472b9844SJames Wright       PetscCall(PetscFree(fields_CGNS));
1485472b9844SJames Wright     }
1486472b9844SJames Wright 
1487472b9844SJames Wright     { // Reduce fields into Vec array
1488472b9844SJames Wright       PetscScalar *V_array;
1489472b9844SJames Wright       MPI_Datatype fieldtype;
1490472b9844SJames Wright 
1491472b9844SJames Wright       PetscCall(VecGetArrayWrite(V, &V_array));
1492472b9844SJames Wright       PetscCallMPI(MPI_Type_contiguous(numComp, MPIU_SCALAR, &fieldtype));
1493472b9844SJames Wright       PetscCallMPI(MPI_Type_commit(&fieldtype));
1494472b9844SJames Wright       PetscCall(PetscSFReduceBegin(sfNatural, fieldtype, fields, V_array, MPI_REPLACE));
1495472b9844SJames Wright       PetscCall(PetscSFReduceEnd(sfNatural, fieldtype, fields, V_array, MPI_REPLACE));
1496472b9844SJames Wright       PetscCallMPI(MPI_Type_free(&fieldtype));
1497472b9844SJames Wright       PetscCall(VecRestoreArrayWrite(V, &V_array));
1498472b9844SJames Wright     }
1499472b9844SJames Wright     PetscCall(PetscFree(fields));
1500472b9844SJames Wright   }
1501472b9844SJames Wright   PetscFunctionReturn(PETSC_SUCCESS);
1502472b9844SJames Wright }
1503