1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/isimpl.h> 3e5c6e791SKarl Rupp #include <petsc/private/vecimpl.h> 48135c375SStefano Zampini #include <petsc/private/glvisvecimpl.h> 50c312b8eSJed Brown #include <petscsf.h> 6e228b242SToby Isaac #include <petscds.h> 7e412dcbdSMatthew G. Knepley #include <petscdraw.h> 8f19dbd58SToby Isaac #include <petscdmfield.h> 9012bc364SMatthew G. Knepley #include <petscdmplextransform.h> 10552f7358SJed Brown 11552f7358SJed Brown /* Logging support */ 1202f7d72cSksagiyam PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF,DMPLEX_LocatePoints,DMPLEX_TopologyView,DMPLEX_LabelsView,DMPLEX_CoordinatesView,DMPLEX_SectionView,DMPLEX_GlobalVectorView,DMPLEX_LocalVectorView,DMPLEX_TopologyLoad,DMPLEX_LabelsLoad,DMPLEX_CoordinatesLoad,DMPLEX_SectionLoad,DMPLEX_GlobalVectorLoad,DMPLEX_LocalVectorLoad; 13552f7358SJed Brown 145a576424SJed Brown PETSC_EXTERN PetscErrorCode VecView_MPI(Vec, PetscViewer); 15552f7358SJed Brown 16e5337592SStefano Zampini /*@ 179318fe57SMatthew G. Knepley DMPlexIsSimplex - Is the first cell in this mesh a simplex? 189318fe57SMatthew G. Knepley 199318fe57SMatthew G. Knepley Input Parameter: 209318fe57SMatthew G. Knepley . dm - The DMPlex object 219318fe57SMatthew G. Knepley 229318fe57SMatthew G. Knepley Output Parameter: 239318fe57SMatthew G. Knepley . simplex - Flag checking for a simplex 249318fe57SMatthew G. Knepley 259318fe57SMatthew G. Knepley Note: This just gives the first range of cells found. If the mesh has several cell types, it will only give the first. 269318fe57SMatthew G. Knepley If the mesh has no cells, this returns PETSC_FALSE. 279318fe57SMatthew G. Knepley 289318fe57SMatthew G. Knepley Level: intermediate 299318fe57SMatthew G. Knepley 30db781477SPatrick Sanan .seealso `DMPlexGetSimplexOrBoxCells()`, `DMPlexGetCellType()`, `DMPlexGetHeightStratum()`, `DMPolytopeTypeGetNumVertices()` 319318fe57SMatthew G. Knepley @*/ 329318fe57SMatthew G. Knepley PetscErrorCode DMPlexIsSimplex(DM dm, PetscBool *simplex) 339318fe57SMatthew G. Knepley { 349318fe57SMatthew G. Knepley DMPolytopeType ct; 359318fe57SMatthew G. Knepley PetscInt cStart, cEnd; 369318fe57SMatthew G. Knepley 379318fe57SMatthew G. Knepley PetscFunctionBegin; 389566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 399318fe57SMatthew G. Knepley if (cEnd <= cStart) {*simplex = PETSC_FALSE; PetscFunctionReturn(0);} 409566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 419318fe57SMatthew G. Knepley *simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct)+1 ? PETSC_TRUE : PETSC_FALSE; 429318fe57SMatthew G. Knepley PetscFunctionReturn(0); 439318fe57SMatthew G. Knepley } 449318fe57SMatthew G. Knepley 459318fe57SMatthew G. Knepley /*@ 46412e9a14SMatthew G. Knepley DMPlexGetSimplexOrBoxCells - Get the range of cells which are neither prisms nor ghost FV cells 47e5337592SStefano Zampini 48d8d19677SJose E. Roman Input Parameters: 49412e9a14SMatthew G. Knepley + dm - The DMPlex object 50412e9a14SMatthew G. Knepley - height - The cell height in the Plex, 0 is the default 51e5337592SStefano Zampini 52e5337592SStefano Zampini Output Parameters: 53412e9a14SMatthew G. Knepley + cStart - The first "normal" cell 54412e9a14SMatthew G. Knepley - cEnd - The upper bound on "normal"" cells 55e5337592SStefano Zampini 56412e9a14SMatthew G. Knepley Note: This just gives the first range of cells found. If the mesh has several cell types, it will only give the first. 57e5337592SStefano Zampini 58412e9a14SMatthew G. Knepley Level: developer 59e5337592SStefano Zampini 60db781477SPatrick Sanan .seealso `DMPlexConstructGhostCells()`, `DMPlexGetGhostCellStratum()` 61e5337592SStefano Zampini @*/ 62412e9a14SMatthew G. Knepley PetscErrorCode DMPlexGetSimplexOrBoxCells(DM dm, PetscInt height, PetscInt *cStart, PetscInt *cEnd) 63e5337592SStefano Zampini { 64412e9a14SMatthew G. Knepley DMPolytopeType ct = DM_POLYTOPE_UNKNOWN; 65412e9a14SMatthew G. Knepley PetscInt cS, cE, c; 66e5337592SStefano Zampini 67e5337592SStefano Zampini PetscFunctionBegin; 689566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, PetscMax(height, 0), &cS, &cE)); 69412e9a14SMatthew G. Knepley for (c = cS; c < cE; ++c) { 70412e9a14SMatthew G. Knepley DMPolytopeType cct; 71412e9a14SMatthew G. Knepley 729566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &cct)); 73412e9a14SMatthew G. Knepley if ((PetscInt) cct < 0) break; 74412e9a14SMatthew G. Knepley switch (cct) { 75ba2698f1SMatthew G. Knepley case DM_POLYTOPE_POINT: 76ba2698f1SMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 77ba2698f1SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 78ba2698f1SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 79ba2698f1SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 80ba2698f1SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 81412e9a14SMatthew G. Knepley ct = cct; 82e5337592SStefano Zampini break; 83412e9a14SMatthew G. Knepley default: break; 84e5337592SStefano Zampini } 85412e9a14SMatthew G. Knepley if (ct != DM_POLYTOPE_UNKNOWN) break; 86e5337592SStefano Zampini } 87412e9a14SMatthew G. Knepley if (ct != DM_POLYTOPE_UNKNOWN) { 88412e9a14SMatthew G. Knepley DMLabel ctLabel; 89412e9a14SMatthew G. Knepley 909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, ct, &cS, &cE)); 92e5337592SStefano Zampini } 93412e9a14SMatthew G. Knepley if (cStart) *cStart = cS; 94412e9a14SMatthew G. Knepley if (cEnd) *cEnd = cE; 95e5337592SStefano Zampini PetscFunctionReturn(0); 96e5337592SStefano Zampini } 97e5337592SStefano Zampini 987afe7537SMatthew G. Knepley PetscErrorCode DMPlexGetFieldType_Internal(DM dm, PetscSection section, PetscInt field, PetscInt *sStart, PetscInt *sEnd, PetscViewerVTKFieldType *ft) 997e42fee7SMatthew G. Knepley { 100412e9a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, vStart, vEnd, cStart, cEnd; 101a99a26bcSAdrian Croucher PetscInt vcdof[2] = {0,0}, globalvcdof[2]; 1027e42fee7SMatthew G. Knepley 1037e42fee7SMatthew G. Knepley PetscFunctionBegin; 104e630c359SToby Isaac *ft = PETSC_VTK_INVALID; 1059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 1097e42fee7SMatthew G. Knepley if (field >= 0) { 1109566063dSJacob Faibussowitsch if ((vStart >= pStart) && (vStart < pEnd)) PetscCall(PetscSectionGetFieldDof(section, vStart, field, &vcdof[0])); 1119566063dSJacob Faibussowitsch if ((cStart >= pStart) && (cStart < pEnd)) PetscCall(PetscSectionGetFieldDof(section, cStart, field, &vcdof[1])); 1127e42fee7SMatthew G. Knepley } else { 1139566063dSJacob Faibussowitsch if ((vStart >= pStart) && (vStart < pEnd)) PetscCall(PetscSectionGetDof(section, vStart, &vcdof[0])); 1149566063dSJacob Faibussowitsch if ((cStart >= pStart) && (cStart < pEnd)) PetscCall(PetscSectionGetDof(section, cStart, &vcdof[1])); 1157e42fee7SMatthew G. Knepley } 1169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(vcdof, globalvcdof, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 117a99a26bcSAdrian Croucher if (globalvcdof[0]) { 1187e42fee7SMatthew G. Knepley *sStart = vStart; 1197e42fee7SMatthew G. Knepley *sEnd = vEnd; 120f094498dSMatthew G. Knepley if (globalvcdof[0] == cdim) *ft = PETSC_VTK_POINT_VECTOR_FIELD; 1217e42fee7SMatthew G. Knepley else *ft = PETSC_VTK_POINT_FIELD; 122a99a26bcSAdrian Croucher } else if (globalvcdof[1]) { 1237e42fee7SMatthew G. Knepley *sStart = cStart; 1247e42fee7SMatthew G. Knepley *sEnd = cEnd; 125f094498dSMatthew G. Knepley if (globalvcdof[1] == cdim) *ft = PETSC_VTK_CELL_VECTOR_FIELD; 1267e42fee7SMatthew G. Knepley else *ft = PETSC_VTK_CELL_FIELD; 127e630c359SToby Isaac } else { 128e630c359SToby Isaac if (field >= 0) { 129e630c359SToby Isaac const char *fieldname; 130e630c359SToby Isaac 1319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, field, &fieldname)); 13263a3b9bcSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject) dm, "Could not classify VTK output type of section field %" PetscInt_FMT " \"%s\"\n", field, fieldname)); 133e630c359SToby Isaac } else { 13463a3b9bcSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject) dm, "Could not classify VTK output type of section\n")); 135e630c359SToby Isaac } 136e630c359SToby Isaac } 1377e42fee7SMatthew G. Knepley PetscFunctionReturn(0); 1387e42fee7SMatthew G. Knepley } 1397e42fee7SMatthew G. Knepley 1406913077dSMatthew G. Knepley /*@ 1416913077dSMatthew G. Knepley DMPlexVecView1D - Plot many 1D solutions on the same line graph 1426913077dSMatthew G. Knepley 1436913077dSMatthew G. Knepley Collective on dm 1446913077dSMatthew G. Knepley 1456913077dSMatthew G. Knepley Input Parameters: 1466913077dSMatthew G. Knepley + dm - The DMPlex 1476913077dSMatthew G. Knepley . n - The number of vectors 1486913077dSMatthew G. Knepley . u - The array of local vectors 1496913077dSMatthew G. Knepley - viewer - The Draw viewer 1506913077dSMatthew G. Knepley 1516913077dSMatthew G. Knepley Level: advanced 1526913077dSMatthew G. Knepley 153db781477SPatrick Sanan .seealso: `VecViewFromOptions()`, `VecView()` 1546913077dSMatthew G. Knepley @*/ 1556913077dSMatthew G. Knepley PetscErrorCode DMPlexVecView1D(DM dm, PetscInt n, Vec u[], PetscViewer viewer) 1566913077dSMatthew G. Knepley { 1576913077dSMatthew G. Knepley PetscDS ds; 1586913077dSMatthew G. Knepley PetscDraw draw = NULL; 1596913077dSMatthew G. Knepley PetscDrawLG lg; 1606913077dSMatthew G. Knepley Vec coordinates; 1616913077dSMatthew G. Knepley const PetscScalar *coords, **sol; 1626913077dSMatthew G. Knepley PetscReal *vals; 1636913077dSMatthew G. Knepley PetscInt *Nc; 1646913077dSMatthew G. Knepley PetscInt Nf, f, c, Nl, l, i, vStart, vEnd, v; 1656913077dSMatthew G. Knepley char **names; 1666913077dSMatthew G. Knepley 1676913077dSMatthew G. Knepley PetscFunctionBegin; 1689566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 1699566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 1709566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(ds, &Nl)); 1719566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponents(ds, &Nc)); 1726913077dSMatthew G. Knepley 1739566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 1746913077dSMatthew G. Knepley if (!draw) PetscFunctionReturn(0); 1759566063dSJacob Faibussowitsch PetscCall(PetscDrawLGCreate(draw, n*Nl, &lg)); 1766913077dSMatthew G. Knepley 1779566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n, &sol, n*Nl, &names, n*Nl, &vals)); 1786913077dSMatthew G. Knepley for (i = 0, l = 0; i < n; ++i) { 1796913077dSMatthew G. Knepley const char *vname; 1806913077dSMatthew G. Knepley 1819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) u[i], &vname)); 1826913077dSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1836913077dSMatthew G. Knepley PetscObject disc; 1846913077dSMatthew G. Knepley const char *fname; 1856913077dSMatthew G. Knepley char tmpname[PETSC_MAX_PATH_LEN]; 1866913077dSMatthew G. Knepley 1879566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &disc)); 1886913077dSMatthew G. Knepley /* TODO Create names for components */ 1896913077dSMatthew G. Knepley for (c = 0; c < Nc[f]; ++c, ++l) { 1909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName(disc, &fname)); 1919566063dSJacob Faibussowitsch PetscCall(PetscStrcpy(tmpname, vname)); 1929566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(tmpname, ":", PETSC_MAX_PATH_LEN)); 1939566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(tmpname, fname, PETSC_MAX_PATH_LEN)); 1949566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(tmpname, &names[l])); 1956913077dSMatthew G. Knepley } 1966913077dSMatthew G. Knepley } 1976913077dSMatthew G. Knepley } 1989566063dSJacob Faibussowitsch PetscCall(PetscDrawLGSetLegend(lg, (const char *const *) names)); 1996913077dSMatthew G. Knepley /* Just add P_1 support for now */ 2009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 2019566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 2029566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &coords)); 2039566063dSJacob Faibussowitsch for (i = 0; i < n; ++i) PetscCall(VecGetArrayRead(u[i], &sol[i])); 2046913077dSMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 2056913077dSMatthew G. Knepley PetscScalar *x, *svals; 2066913077dSMatthew G. Knepley 2079566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, v, coords, &x)); 2086913077dSMatthew G. Knepley for (i = 0; i < n; ++i) { 2099566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, v, sol[i], &svals)); 2106913077dSMatthew G. Knepley for (l = 0; l < Nl; ++l) vals[i*Nl + l] = PetscRealPart(svals[l]); 2116913077dSMatthew G. Knepley } 2129566063dSJacob Faibussowitsch PetscCall(PetscDrawLGAddCommonPoint(lg, PetscRealPart(x[0]), vals)); 2136913077dSMatthew G. Knepley } 2149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &coords)); 2159566063dSJacob Faibussowitsch for (i = 0; i < n; ++i) PetscCall(VecRestoreArrayRead(u[i], &sol[i])); 2169566063dSJacob Faibussowitsch for (l = 0; l < n*Nl; ++l) PetscCall(PetscFree(names[l])); 2179566063dSJacob Faibussowitsch PetscCall(PetscFree3(sol, names, vals)); 2186913077dSMatthew G. Knepley 2199566063dSJacob Faibussowitsch PetscCall(PetscDrawLGDraw(lg)); 2209566063dSJacob Faibussowitsch PetscCall(PetscDrawLGDestroy(&lg)); 2216913077dSMatthew G. Knepley PetscFunctionReturn(0); 2226913077dSMatthew G. Knepley } 2236913077dSMatthew G. Knepley 2246913077dSMatthew G. Knepley static PetscErrorCode VecView_Plex_Local_Draw_1D(Vec u, PetscViewer viewer) 2256913077dSMatthew G. Knepley { 2266913077dSMatthew G. Knepley DM dm; 2276913077dSMatthew G. Knepley 2286913077dSMatthew G. Knepley PetscFunctionBegin; 2299566063dSJacob Faibussowitsch PetscCall(VecGetDM(u, &dm)); 2309566063dSJacob Faibussowitsch PetscCall(DMPlexVecView1D(dm, 1, &u, viewer)); 2316913077dSMatthew G. Knepley PetscFunctionReturn(0); 2326913077dSMatthew G. Knepley } 2336913077dSMatthew G. Knepley 2346913077dSMatthew G. Knepley static PetscErrorCode VecView_Plex_Local_Draw_2D(Vec v, PetscViewer viewer) 235e412dcbdSMatthew G. Knepley { 236e412dcbdSMatthew G. Knepley DM dm; 237d1df6f1dSMatthew G. Knepley PetscSection s; 238e412dcbdSMatthew G. Knepley PetscDraw draw, popup; 239e412dcbdSMatthew G. Knepley DM cdm; 240e412dcbdSMatthew G. Knepley PetscSection coordSection; 241e412dcbdSMatthew G. Knepley Vec coordinates; 242e412dcbdSMatthew G. Knepley const PetscScalar *coords, *array; 243e412dcbdSMatthew G. Knepley PetscReal bound[4] = {PETSC_MAX_REAL, PETSC_MAX_REAL, PETSC_MIN_REAL, PETSC_MIN_REAL}; 244339e3443SMatthew G. Knepley PetscReal vbound[2], time; 2456913077dSMatthew G. Knepley PetscBool flg; 246d1df6f1dSMatthew G. Knepley PetscInt dim, Nf, f, Nc, comp, vStart, vEnd, cStart, cEnd, c, N, level, step, w = 0; 247e412dcbdSMatthew G. Knepley const char *name; 248339e3443SMatthew G. Knepley char title[PETSC_MAX_PATH_LEN]; 249e412dcbdSMatthew G. Knepley 250e412dcbdSMatthew G. Knepley PetscFunctionBegin; 2519566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 2529566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 2539566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 2549566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 2559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 2569566063dSJacob Faibussowitsch PetscCall(DMGetCoarsenLevel(dm, &level)); 2579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &cdm)); 2589566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(cdm, &coordSection)); 2599566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 2609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 2619566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 262e412dcbdSMatthew G. Knepley 2639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 2649566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, &step, &time)); 265e412dcbdSMatthew G. Knepley 2669566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(coordinates, &N)); 2679566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &coords)); 268e412dcbdSMatthew G. Knepley for (c = 0; c < N; c += dim) { 2690c81f2a8SMatthew G. Knepley bound[0] = PetscMin(bound[0], PetscRealPart(coords[c])); bound[2] = PetscMax(bound[2], PetscRealPart(coords[c])); 2700c81f2a8SMatthew G. Knepley bound[1] = PetscMin(bound[1], PetscRealPart(coords[c+1])); bound[3] = PetscMax(bound[3], PetscRealPart(coords[c+1])); 271e412dcbdSMatthew G. Knepley } 2729566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &coords)); 2739566063dSJacob Faibussowitsch PetscCall(PetscDrawClear(draw)); 274e412dcbdSMatthew G. Knepley 275d1df6f1dSMatthew G. Knepley /* Could implement something like DMDASelectFields() */ 276d1df6f1dSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 277d1df6f1dSMatthew G. Knepley DM fdm = dm; 278d1df6f1dSMatthew G. Knepley Vec fv = v; 279d1df6f1dSMatthew G. Knepley IS fis; 280d1df6f1dSMatthew G. Knepley char prefix[PETSC_MAX_PATH_LEN]; 281d1df6f1dSMatthew G. Knepley const char *fname; 282d1df6f1dSMatthew G. Knepley 2839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(s, f, &fname)); 285d1df6f1dSMatthew G. Knepley 2869566063dSJacob Faibussowitsch if (v->hdr.prefix) PetscCall(PetscStrncpy(prefix, v->hdr.prefix,sizeof(prefix))); 287d1df6f1dSMatthew G. Knepley else {prefix[0] = '\0';} 288d1df6f1dSMatthew G. Knepley if (Nf > 1) { 2899566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, &fis, &fdm)); 2909566063dSJacob Faibussowitsch PetscCall(VecGetSubVector(v, fis, &fv)); 2919566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(prefix, fname,sizeof(prefix))); 2929566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(prefix, "_",sizeof(prefix))); 293d1df6f1dSMatthew G. Knepley } 294d1df6f1dSMatthew G. Knepley for (comp = 0; comp < Nc; ++comp, ++w) { 295d1df6f1dSMatthew G. Knepley PetscInt nmax = 2; 296d1df6f1dSMatthew G. Knepley 2979566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, w, &draw)); 29863a3b9bcSJacob Faibussowitsch if (Nc > 1) PetscCall(PetscSNPrintf(title, sizeof(title), "%s:%s_%" PetscInt_FMT " Step: %" PetscInt_FMT " Time: %.4g", name, fname, comp, step, (double)time)); 29963a3b9bcSJacob Faibussowitsch else PetscCall(PetscSNPrintf(title, sizeof(title), "%s:%s Step: %" PetscInt_FMT " Time: %.4g", name, fname, step, (double)time)); 3009566063dSJacob Faibussowitsch PetscCall(PetscDrawSetTitle(draw, title)); 301d1df6f1dSMatthew G. Knepley 302d1df6f1dSMatthew G. Knepley /* TODO Get max and min only for this component */ 3039566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetRealArray(NULL, prefix, "-vec_view_bounds", vbound, &nmax, &flg)); 304339e3443SMatthew G. Knepley if (!flg) { 3059566063dSJacob Faibussowitsch PetscCall(VecMin(fv, NULL, &vbound[0])); 3069566063dSJacob Faibussowitsch PetscCall(VecMax(fv, NULL, &vbound[1])); 307d1df6f1dSMatthew G. Knepley if (vbound[1] <= vbound[0]) vbound[1] = vbound[0] + 1.0; 308339e3443SMatthew G. Knepley } 3099566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw, &popup)); 3109566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup, vbound[0], vbound[1])); 3119566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, bound[0], bound[1], bound[2], bound[3])); 312e412dcbdSMatthew G. Knepley 3139566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(fv, &array)); 314e412dcbdSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 31599a2f7bcSMatthew G. Knepley PetscScalar *coords = NULL, *a = NULL; 316e56f9228SJed Brown PetscInt numCoords, color[4] = {-1,-1,-1,-1}; 317e412dcbdSMatthew G. Knepley 3189566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(fdm, c, array, &a)); 319339e3443SMatthew G. Knepley if (a) { 320d1df6f1dSMatthew G. Knepley color[0] = PetscDrawRealToColor(PetscRealPart(a[comp]), vbound[0], vbound[1]); 321339e3443SMatthew G. Knepley color[1] = color[2] = color[3] = color[0]; 322339e3443SMatthew G. Knepley } else { 323339e3443SMatthew G. Knepley PetscScalar *vals = NULL; 324339e3443SMatthew G. Knepley PetscInt numVals, va; 325339e3443SMatthew G. Knepley 3269566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(fdm, NULL, fv, c, &numVals, &vals)); 32763a3b9bcSJacob Faibussowitsch PetscCheck(numVals % Nc == 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of components %" PetscInt_FMT " does not divide the number of values in the closure %" PetscInt_FMT, Nc, numVals); 328d1df6f1dSMatthew G. Knepley switch (numVals/Nc) { 329d1df6f1dSMatthew G. Knepley case 3: /* P1 Triangle */ 330d1df6f1dSMatthew G. Knepley case 4: /* P1 Quadrangle */ 331d1df6f1dSMatthew G. Knepley for (va = 0; va < numVals/Nc; ++va) color[va] = PetscDrawRealToColor(PetscRealPart(vals[va*Nc+comp]), vbound[0], vbound[1]); 332339e3443SMatthew G. Knepley break; 333d1df6f1dSMatthew G. Knepley case 6: /* P2 Triangle */ 334d1df6f1dSMatthew G. Knepley case 8: /* P2 Quadrangle */ 335d1df6f1dSMatthew G. Knepley for (va = 0; va < numVals/(Nc*2); ++va) color[va] = PetscDrawRealToColor(PetscRealPart(vals[va*Nc+comp + numVals/(Nc*2)]), vbound[0], vbound[1]); 336d1df6f1dSMatthew G. Knepley break; 33763a3b9bcSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of values for cell closure %" PetscInt_FMT " cannot be handled", numVals/Nc); 338339e3443SMatthew G. Knepley } 3399566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(fdm, NULL, fv, c, &numVals, &vals)); 340339e3443SMatthew G. Knepley } 3419566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, coordSection, coordinates, c, &numCoords, &coords)); 342e412dcbdSMatthew G. Knepley switch (numCoords) { 343e412dcbdSMatthew G. Knepley case 6: 3449edc3542SMatthew Knepley case 12: /* Localized triangle */ 3459566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), color[0], color[1], color[2])); 346e412dcbdSMatthew G. Knepley break; 347e412dcbdSMatthew G. Knepley case 8: 3489edc3542SMatthew Knepley case 16: /* Localized quadrilateral */ 3499566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), color[0], color[1], color[2])); 3509566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[4]), PetscRealPart(coords[5]), PetscRealPart(coords[6]), PetscRealPart(coords[7]), PetscRealPart(coords[0]), PetscRealPart(coords[1]), color[2], color[3], color[0])); 351e412dcbdSMatthew G. Knepley break; 35263a3b9bcSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot draw cells with %" PetscInt_FMT " coordinates", numCoords); 353e412dcbdSMatthew G. Knepley } 3549566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, coordSection, coordinates, c, &numCoords, &coords)); 355e412dcbdSMatthew G. Knepley } 3569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(fv, &array)); 3579566063dSJacob Faibussowitsch PetscCall(PetscDrawFlush(draw)); 3589566063dSJacob Faibussowitsch PetscCall(PetscDrawPause(draw)); 3599566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 360d1df6f1dSMatthew G. Knepley } 361d1df6f1dSMatthew G. Knepley if (Nf > 1) { 3629566063dSJacob Faibussowitsch PetscCall(VecRestoreSubVector(v, fis, &fv)); 3639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fis)); 3649566063dSJacob Faibussowitsch PetscCall(DMDestroy(&fdm)); 365d1df6f1dSMatthew G. Knepley } 366d1df6f1dSMatthew G. Knepley } 367e412dcbdSMatthew G. Knepley PetscFunctionReturn(0); 368e412dcbdSMatthew G. Knepley } 369e412dcbdSMatthew G. Knepley 3706913077dSMatthew G. Knepley static PetscErrorCode VecView_Plex_Local_Draw(Vec v, PetscViewer viewer) 3716913077dSMatthew G. Knepley { 3726913077dSMatthew G. Knepley DM dm; 3736913077dSMatthew G. Knepley PetscDraw draw; 3746913077dSMatthew G. Knepley PetscInt dim; 3756913077dSMatthew G. Knepley PetscBool isnull; 3766913077dSMatthew G. Knepley 3776913077dSMatthew G. Knepley PetscFunctionBegin; 3789566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 3799566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 3806913077dSMatthew G. Knepley if (isnull) PetscFunctionReturn(0); 3816913077dSMatthew G. Knepley 3829566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 3839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 3846913077dSMatthew G. Knepley switch (dim) { 3859566063dSJacob Faibussowitsch case 1: PetscCall(VecView_Plex_Local_Draw_1D(v, viewer));break; 3869566063dSJacob Faibussowitsch case 2: PetscCall(VecView_Plex_Local_Draw_2D(v, viewer));break; 3875f80ce2aSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) v), PETSC_ERR_SUP, "Cannot draw meshes of dimension %" PetscInt_FMT ". Try PETSCVIEWERGLVIS", dim); 3886913077dSMatthew G. Knepley } 3896913077dSMatthew G. Knepley PetscFunctionReturn(0); 3906913077dSMatthew G. Knepley } 3916913077dSMatthew G. Knepley 392684b87d9SLisandro Dalcin static PetscErrorCode VecView_Plex_Local_VTK(Vec v, PetscViewer viewer) 393684b87d9SLisandro Dalcin { 394684b87d9SLisandro Dalcin DM dm; 395684b87d9SLisandro Dalcin Vec locv; 396684b87d9SLisandro Dalcin const char *name; 397684b87d9SLisandro Dalcin PetscSection section; 398684b87d9SLisandro Dalcin PetscInt pStart, pEnd; 399e630c359SToby Isaac PetscInt numFields; 400684b87d9SLisandro Dalcin PetscViewerVTKFieldType ft; 401684b87d9SLisandro Dalcin 402684b87d9SLisandro Dalcin PetscFunctionBegin; 4039566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 4049566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm, &locv)); /* VTK viewer requires exclusive ownership of the vector */ 4059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 4069566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) locv, name)); 4079566063dSJacob Faibussowitsch PetscCall(VecCopy(v, locv)); 4089566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 4099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 410e630c359SToby Isaac if (!numFields) { 4119566063dSJacob Faibussowitsch PetscCall(DMPlexGetFieldType_Internal(dm, section, PETSC_DETERMINE, &pStart, &pEnd, &ft)); 4129566063dSJacob Faibussowitsch PetscCall(PetscViewerVTKAddField(viewer, (PetscObject) dm, DMPlexVTKWriteAll, PETSC_DEFAULT, ft, PETSC_TRUE,(PetscObject) locv)); 413e630c359SToby Isaac } else { 414e630c359SToby Isaac PetscInt f; 415e630c359SToby Isaac 416e630c359SToby Isaac for (f = 0; f < numFields; f++) { 4179566063dSJacob Faibussowitsch PetscCall(DMPlexGetFieldType_Internal(dm, section, f, &pStart, &pEnd, &ft)); 418e630c359SToby Isaac if (ft == PETSC_VTK_INVALID) continue; 4199566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)locv)); 4209566063dSJacob Faibussowitsch PetscCall(PetscViewerVTKAddField(viewer, (PetscObject) dm, DMPlexVTKWriteAll, f, ft, PETSC_TRUE,(PetscObject) locv)); 421e630c359SToby Isaac } 4229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&locv)); 423e630c359SToby Isaac } 424684b87d9SLisandro Dalcin PetscFunctionReturn(0); 425684b87d9SLisandro Dalcin } 426684b87d9SLisandro Dalcin 427552f7358SJed Brown PetscErrorCode VecView_Plex_Local(Vec v, PetscViewer viewer) 428552f7358SJed Brown { 429552f7358SJed Brown DM dm; 430684b87d9SLisandro Dalcin PetscBool isvtk, ishdf5, isdraw, isglvis; 431552f7358SJed Brown 432552f7358SJed Brown PetscFunctionBegin; 4339566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 43428b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject)v), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 4359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 4369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 4379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERDRAW, &isdraw)); 4389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERGLVIS, &isglvis)); 439684b87d9SLisandro Dalcin if (isvtk || ishdf5 || isdraw || isglvis) { 440684b87d9SLisandro Dalcin PetscInt i,numFields; 441684b87d9SLisandro Dalcin PetscObject fe; 442ef31f671SMatthew G. Knepley PetscBool fem = PETSC_FALSE; 443684b87d9SLisandro Dalcin Vec locv = v; 444684b87d9SLisandro Dalcin const char *name; 445684b87d9SLisandro Dalcin PetscInt step; 446684b87d9SLisandro Dalcin PetscReal time; 447ef31f671SMatthew G. Knepley 4489566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 449684b87d9SLisandro Dalcin for (i=0; i<numFields; i++) { 4509566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, i, NULL, &fe)); 451684b87d9SLisandro Dalcin if (fe->classid == PETSCFE_CLASSID) { fem = PETSC_TRUE; break; } 452ef31f671SMatthew G. Knepley } 453684b87d9SLisandro Dalcin if (fem) { 454798534f6SMatthew G. Knepley PetscObject isZero; 455798534f6SMatthew G. Knepley 4569566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locv)); 4579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 4589566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) locv, name)); 4599566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) v, "__Vec_bc_zero__", &isZero)); 4609566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) locv, "__Vec_bc_zero__", isZero)); 4619566063dSJacob Faibussowitsch PetscCall(VecCopy(v, locv)); 4629566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 4639566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locv, time, NULL, NULL, NULL)); 464ef31f671SMatthew G. Knepley } 465552f7358SJed Brown if (isvtk) { 4669566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local_VTK(locv, viewer)); 467b136c2c9SMatthew G. Knepley } else if (ishdf5) { 468b136c2c9SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 4699566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local_HDF5_Internal(locv, viewer)); 470b136c2c9SMatthew G. Knepley #else 471b136c2c9SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 472b136c2c9SMatthew G. Knepley #endif 473f13a32a3SMatthew G. Knepley } else if (isdraw) { 4749566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local_Draw(locv, viewer)); 475684b87d9SLisandro Dalcin } else if (isglvis) { 4769566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, &step, NULL)); 4779566063dSJacob Faibussowitsch PetscCall(PetscViewerGLVisSetSnapId(viewer, step)); 4789566063dSJacob Faibussowitsch PetscCall(VecView_GLVis(locv, viewer)); 479684b87d9SLisandro Dalcin } 480798534f6SMatthew G. Knepley if (fem) { 4819566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) locv, "__Vec_bc_zero__", NULL)); 4829566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locv)); 483798534f6SMatthew G. Knepley } 484552f7358SJed Brown } else { 485684b87d9SLisandro Dalcin PetscBool isseq; 486684b87d9SLisandro Dalcin 4879566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) v, VECSEQ, &isseq)); 4889566063dSJacob Faibussowitsch if (isseq) PetscCall(VecView_Seq(v, viewer)); 4899566063dSJacob Faibussowitsch else PetscCall(VecView_MPI(v, viewer)); 490552f7358SJed Brown } 491552f7358SJed Brown PetscFunctionReturn(0); 492552f7358SJed Brown } 493552f7358SJed Brown 494552f7358SJed Brown PetscErrorCode VecView_Plex(Vec v, PetscViewer viewer) 495552f7358SJed Brown { 496552f7358SJed Brown DM dm; 4976823f3c5SBlaise Bourdin PetscBool isvtk, ishdf5, isdraw, isglvis, isexodusii; 498552f7358SJed Brown 499552f7358SJed Brown PetscFunctionBegin; 5009566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 50128b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject)v), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 5029566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 5039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 5049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERDRAW, &isdraw)); 5059566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERGLVIS, &isglvis)); 5069566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWEREXODUSII, &isexodusii)); 507684b87d9SLisandro Dalcin if (isvtk || isdraw || isglvis) { 508552f7358SJed Brown Vec locv; 509798534f6SMatthew G. Knepley PetscObject isZero; 510552f7358SJed Brown const char *name; 511552f7358SJed Brown 5129566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locv)); 5139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 5149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) locv, name)); 5159566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, v, INSERT_VALUES, locv)); 5169566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, v, INSERT_VALUES, locv)); 5179566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) v, "__Vec_bc_zero__", &isZero)); 5189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) locv, "__Vec_bc_zero__", isZero)); 5199566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local(locv, viewer)); 5209566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) locv, "__Vec_bc_zero__", NULL)); 5219566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locv)); 522b136c2c9SMatthew G. Knepley } else if (ishdf5) { 523b136c2c9SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 5249566063dSJacob Faibussowitsch PetscCall(VecView_Plex_HDF5_Internal(v, viewer)); 525b136c2c9SMatthew G. Knepley #else 526b136c2c9SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 527b136c2c9SMatthew G. Knepley #endif 5286823f3c5SBlaise Bourdin } else if (isexodusii) { 5296823f3c5SBlaise Bourdin #if defined(PETSC_HAVE_EXODUSII) 5309566063dSJacob Faibussowitsch PetscCall(VecView_PlexExodusII_Internal(v, viewer)); 5316823f3c5SBlaise Bourdin #else 5326823f3c5SBlaise Bourdin SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "ExodusII not supported in this build.\nPlease reconfigure using --download-exodusii"); 5336823f3c5SBlaise Bourdin #endif 534552f7358SJed Brown } else { 535684b87d9SLisandro Dalcin PetscBool isseq; 536684b87d9SLisandro Dalcin 5379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) v, VECSEQ, &isseq)); 5389566063dSJacob Faibussowitsch if (isseq) PetscCall(VecView_Seq(v, viewer)); 5399566063dSJacob Faibussowitsch else PetscCall(VecView_MPI(v, viewer)); 540552f7358SJed Brown } 541552f7358SJed Brown PetscFunctionReturn(0); 542552f7358SJed Brown } 543552f7358SJed Brown 544d930f514SMatthew G. Knepley PetscErrorCode VecView_Plex_Native(Vec originalv, PetscViewer viewer) 545d930f514SMatthew G. Knepley { 546d930f514SMatthew G. Knepley DM dm; 547d930f514SMatthew G. Knepley MPI_Comm comm; 548d930f514SMatthew G. Knepley PetscViewerFormat format; 549d930f514SMatthew G. Knepley Vec v; 550d930f514SMatthew G. Knepley PetscBool isvtk, ishdf5; 551d930f514SMatthew G. Knepley 552d930f514SMatthew G. Knepley PetscFunctionBegin; 5539566063dSJacob Faibussowitsch PetscCall(VecGetDM(originalv, &dm)); 5549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) originalv, &comm)); 55528b400f6SJacob Faibussowitsch PetscCheck(dm,comm, PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 5569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 5579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 5589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 559d930f514SMatthew G. Knepley if (format == PETSC_VIEWER_NATIVE) { 560a8ad634aSStefano Zampini /* Natural ordering is the common case for DMDA, NATIVE means plain vector, for PLEX is the opposite */ 561a8ad634aSStefano Zampini /* this need a better fix */ 562a8ad634aSStefano Zampini if (dm->useNatural) { 563a8ad634aSStefano Zampini if (dm->sfNatural) { 564d930f514SMatthew G. Knepley const char *vecname; 565d930f514SMatthew G. Knepley PetscInt n, nroots; 566d930f514SMatthew G. Knepley 5679566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(originalv, &n)); 5689566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sfNatural, &nroots, NULL, NULL, NULL)); 569d930f514SMatthew G. Knepley if (n == nroots) { 5709566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &v)); 5719566063dSJacob Faibussowitsch PetscCall(DMPlexGlobalToNaturalBegin(dm, originalv, v)); 5729566063dSJacob Faibussowitsch PetscCall(DMPlexGlobalToNaturalEnd(dm, originalv, v)); 5739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) originalv, &vecname)); 5749566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) v, vecname)); 575d930f514SMatthew G. Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "DM global to natural SF only handles global vectors"); 576d930f514SMatthew G. Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONGSTATE, "DM global to natural SF was not created"); 577a8ad634aSStefano Zampini } else v = originalv; 578a8ad634aSStefano Zampini } else v = originalv; 579a8ad634aSStefano Zampini 580d930f514SMatthew G. Knepley if (ishdf5) { 581d930f514SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 5829566063dSJacob Faibussowitsch PetscCall(VecView_Plex_HDF5_Native_Internal(v, viewer)); 583d930f514SMatthew G. Knepley #else 584d930f514SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 585d930f514SMatthew G. Knepley #endif 586d930f514SMatthew G. Knepley } else if (isvtk) { 587d930f514SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_SUP, "VTK format does not support viewing in natural order. Please switch to HDF5."); 588d930f514SMatthew G. Knepley } else { 589d930f514SMatthew G. Knepley PetscBool isseq; 590d930f514SMatthew G. Knepley 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) v, VECSEQ, &isseq)); 5929566063dSJacob Faibussowitsch if (isseq) PetscCall(VecView_Seq(v, viewer)); 5939566063dSJacob Faibussowitsch else PetscCall(VecView_MPI(v, viewer)); 594d930f514SMatthew G. Knepley } 5959566063dSJacob Faibussowitsch if (v != originalv) PetscCall(DMRestoreGlobalVector(dm, &v)); 596d930f514SMatthew G. Knepley PetscFunctionReturn(0); 597d930f514SMatthew G. Knepley } 598d930f514SMatthew G. Knepley 5992c40f234SMatthew G. Knepley PetscErrorCode VecLoad_Plex_Local(Vec v, PetscViewer viewer) 6002c40f234SMatthew G. Knepley { 6012c40f234SMatthew G. Knepley DM dm; 6022c40f234SMatthew G. Knepley PetscBool ishdf5; 6032c40f234SMatthew G. Knepley 6042c40f234SMatthew G. Knepley PetscFunctionBegin; 6059566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 60628b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject)v), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 6082c40f234SMatthew G. Knepley if (ishdf5) { 6092c40f234SMatthew G. Knepley DM dmBC; 6102c40f234SMatthew G. Knepley Vec gv; 6112c40f234SMatthew G. Knepley const char *name; 6122c40f234SMatthew G. Knepley 6139566063dSJacob Faibussowitsch PetscCall(DMGetOutputDM(dm, &dmBC)); 6149566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmBC, &gv)); 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 6169566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) gv, name)); 6179566063dSJacob Faibussowitsch PetscCall(VecLoad_Default(gv, viewer)); 6189566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmBC, gv, INSERT_VALUES, v)); 6199566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmBC, gv, INSERT_VALUES, v)); 6209566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmBC, &gv)); 6212c40f234SMatthew G. Knepley } else { 6229566063dSJacob Faibussowitsch PetscCall(VecLoad_Default(v, viewer)); 6232c40f234SMatthew G. Knepley } 6242c40f234SMatthew G. Knepley PetscFunctionReturn(0); 6252c40f234SMatthew G. Knepley } 6262c40f234SMatthew G. Knepley 6272c40f234SMatthew G. Knepley PetscErrorCode VecLoad_Plex(Vec v, PetscViewer viewer) 6282c40f234SMatthew G. Knepley { 6292c40f234SMatthew G. Knepley DM dm; 6306823f3c5SBlaise Bourdin PetscBool ishdf5,isexodusii; 6312c40f234SMatthew G. Knepley 6322c40f234SMatthew G. Knepley PetscFunctionBegin; 6339566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 63428b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject)v), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 6359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 6369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWEREXODUSII, &isexodusii)); 6372c40f234SMatthew G. Knepley if (ishdf5) { 638878b459fSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6399566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex_HDF5_Internal(v, viewer)); 640b136c2c9SMatthew G. Knepley #else 641b136c2c9SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 642878b459fSMatthew G. Knepley #endif 6436823f3c5SBlaise Bourdin } else if (isexodusii) { 6446823f3c5SBlaise Bourdin #if defined(PETSC_HAVE_EXODUSII) 6459566063dSJacob Faibussowitsch PetscCall(VecLoad_PlexExodusII_Internal(v, viewer)); 6466823f3c5SBlaise Bourdin #else 6476823f3c5SBlaise Bourdin SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "ExodusII not supported in this build.\nPlease reconfigure using --download-exodusii"); 6486823f3c5SBlaise Bourdin #endif 6492c40f234SMatthew G. Knepley } else { 6509566063dSJacob Faibussowitsch PetscCall(VecLoad_Default(v, viewer)); 651552f7358SJed Brown } 652552f7358SJed Brown PetscFunctionReturn(0); 653552f7358SJed Brown } 654552f7358SJed Brown 655d930f514SMatthew G. Knepley PetscErrorCode VecLoad_Plex_Native(Vec originalv, PetscViewer viewer) 656d930f514SMatthew G. Knepley { 657d930f514SMatthew G. Knepley DM dm; 658d930f514SMatthew G. Knepley PetscViewerFormat format; 659d930f514SMatthew G. Knepley PetscBool ishdf5; 660d930f514SMatthew G. Knepley 661d930f514SMatthew G. Knepley PetscFunctionBegin; 6629566063dSJacob Faibussowitsch PetscCall(VecGetDM(originalv, &dm)); 66328b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject) originalv), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 6649566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 6659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 666d930f514SMatthew G. Knepley if (format == PETSC_VIEWER_NATIVE) { 667a8ad634aSStefano Zampini if (dm->useNatural) { 668d930f514SMatthew G. Knepley if (dm->sfNatural) { 669d930f514SMatthew G. Knepley if (ishdf5) { 670d930f514SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 671d930f514SMatthew G. Knepley Vec v; 672d930f514SMatthew G. Knepley const char *vecname; 673d930f514SMatthew G. Knepley 6749566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &v)); 6759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) originalv, &vecname)); 6769566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) v, vecname)); 6779566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex_HDF5_Native_Internal(v, viewer)); 6789566063dSJacob Faibussowitsch PetscCall(DMPlexNaturalToGlobalBegin(dm, v, originalv)); 6799566063dSJacob Faibussowitsch PetscCall(DMPlexNaturalToGlobalEnd(dm, v, originalv)); 6809566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &v)); 681d930f514SMatthew G. Knepley #else 682d930f514SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 683d930f514SMatthew G. Knepley #endif 684d930f514SMatthew G. Knepley } else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Reading in natural order is not supported for anything but HDF5."); 685d930f514SMatthew G. Knepley } 686a8ad634aSStefano Zampini } else { 6879566063dSJacob Faibussowitsch PetscCall(VecLoad_Default(originalv, viewer)); 688a8ad634aSStefano Zampini } 689d930f514SMatthew G. Knepley } 690d930f514SMatthew G. Knepley PetscFunctionReturn(0); 691d930f514SMatthew G. Knepley } 692d930f514SMatthew G. Knepley 6937cd05799SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexView_Ascii_Geometry(DM dm, PetscViewer viewer) 694731e8ddeSMatthew G. Knepley { 695731e8ddeSMatthew G. Knepley PetscSection coordSection; 696731e8ddeSMatthew G. Knepley Vec coordinates; 697ba2698f1SMatthew G. Knepley DMLabel depthLabel, celltypeLabel; 698731e8ddeSMatthew G. Knepley const char *name[4]; 699731e8ddeSMatthew G. Knepley const PetscScalar *a; 700731e8ddeSMatthew G. Knepley PetscInt dim, pStart, pEnd, cStart, cEnd, c; 701731e8ddeSMatthew G. Knepley 702731e8ddeSMatthew G. Knepley PetscFunctionBegin; 7039566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 7049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 7059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 7069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 7079566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &celltypeLabel)); 7089566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 7099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &pStart, &pEnd)); 7109566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &a)); 711731e8ddeSMatthew G. Knepley name[0] = "vertex"; 712731e8ddeSMatthew G. Knepley name[1] = "edge"; 713731e8ddeSMatthew G. Knepley name[dim-1] = "face"; 714731e8ddeSMatthew G. Knepley name[dim] = "cell"; 715731e8ddeSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 716731e8ddeSMatthew G. Knepley PetscInt *closure = NULL; 717ba2698f1SMatthew G. Knepley PetscInt closureSize, cl, ct; 718731e8ddeSMatthew G. Knepley 7199566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(celltypeLabel, c, &ct)); 72063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Geometry for cell %" PetscInt_FMT " polytope type %s:\n", c, DMPolytopeTypes[ct])); 7219566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 7229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 723731e8ddeSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 724731e8ddeSMatthew G. Knepley PetscInt point = closure[cl], depth, dof, off, d, p; 725731e8ddeSMatthew G. Knepley 726731e8ddeSMatthew G. Knepley if ((point < pStart) || (point >= pEnd)) continue; 7279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, point, &dof)); 728731e8ddeSMatthew G. Knepley if (!dof) continue; 7299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, point, &depth)); 7309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, point, &off)); 73163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s %" PetscInt_FMT " coords:", name[depth], point)); 732731e8ddeSMatthew G. Knepley for (p = 0; p < dof/dim; ++p) { 7339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (")); 734731e8ddeSMatthew G. Knepley for (d = 0; d < dim; ++d) { 7359566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscViewerASCIIPrintf(viewer, ", ")); 7369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%g", (double) PetscRealPart(a[off+p*dim+d]))); 737731e8ddeSMatthew G. Knepley } 7389566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, ")")); 739731e8ddeSMatthew G. Knepley } 7409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 741731e8ddeSMatthew G. Knepley } 7429566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 7439566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 744731e8ddeSMatthew G. Knepley } 7459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &a)); 746731e8ddeSMatthew G. Knepley PetscFunctionReturn(0); 747731e8ddeSMatthew G. Knepley } 748731e8ddeSMatthew G. Knepley 74919ad8254SMatthew G. Knepley typedef enum {CS_CARTESIAN, CS_POLAR, CS_CYLINDRICAL, CS_SPHERICAL} CoordSystem; 75019ad8254SMatthew G. Knepley const char *CoordSystems[] = {"cartesian", "polar", "cylindrical", "spherical", "CoordSystem", "CS_", NULL}; 75119ad8254SMatthew G. Knepley 75219ad8254SMatthew G. Knepley static PetscErrorCode DMPlexView_Ascii_Coordinates(PetscViewer viewer, CoordSystem cs, PetscInt dim, const PetscScalar x[]) 75319ad8254SMatthew G. Knepley { 75419ad8254SMatthew G. Knepley PetscInt i; 75519ad8254SMatthew G. Knepley 75619ad8254SMatthew G. Knepley PetscFunctionBegin; 75719ad8254SMatthew G. Knepley if (dim > 3) { 7589566063dSJacob Faibussowitsch for (i = 0; i < dim; ++i) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " %g", (double) PetscRealPart(x[i]))); 75919ad8254SMatthew G. Knepley } else { 760bd83fdcbSStefano Zampini PetscReal coords[3], trcoords[3] = {0., 0., 0.}; 76119ad8254SMatthew G. Knepley 76219ad8254SMatthew G. Knepley for (i = 0; i < dim; ++i) coords[i] = PetscRealPart(x[i]); 76319ad8254SMatthew G. Knepley switch (cs) { 76419ad8254SMatthew G. Knepley case CS_CARTESIAN: for (i = 0; i < dim; ++i) trcoords[i] = coords[i];break; 76519ad8254SMatthew G. Knepley case CS_POLAR: 76663a3b9bcSJacob Faibussowitsch PetscCheck(dim == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Polar coordinates are for 2 dimension, not %" PetscInt_FMT, dim); 76719ad8254SMatthew G. Knepley trcoords[0] = PetscSqrtReal(PetscSqr(coords[0]) + PetscSqr(coords[1])); 76819ad8254SMatthew G. Knepley trcoords[1] = PetscAtan2Real(coords[1], coords[0]); 76919ad8254SMatthew G. Knepley break; 77019ad8254SMatthew G. Knepley case CS_CYLINDRICAL: 77163a3b9bcSJacob Faibussowitsch PetscCheck(dim == 3,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cylindrical coordinates are for 3 dimension, not %" PetscInt_FMT, dim); 77219ad8254SMatthew G. Knepley trcoords[0] = PetscSqrtReal(PetscSqr(coords[0]) + PetscSqr(coords[1])); 77319ad8254SMatthew G. Knepley trcoords[1] = PetscAtan2Real(coords[1], coords[0]); 77419ad8254SMatthew G. Knepley trcoords[2] = coords[2]; 77519ad8254SMatthew G. Knepley break; 77619ad8254SMatthew G. Knepley case CS_SPHERICAL: 77763a3b9bcSJacob Faibussowitsch PetscCheck(dim == 3,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Spherical coordinates are for 3 dimension, not %" PetscInt_FMT, dim); 77819ad8254SMatthew G. Knepley trcoords[0] = PetscSqrtReal(PetscSqr(coords[0]) + PetscSqr(coords[1]) + PetscSqr(coords[2])); 77919ad8254SMatthew G. Knepley trcoords[1] = PetscAtan2Real(PetscSqrtReal(PetscSqr(coords[0]) + PetscSqr(coords[1])), coords[2]); 78019ad8254SMatthew G. Knepley trcoords[2] = PetscAtan2Real(coords[1], coords[0]); 78119ad8254SMatthew G. Knepley break; 78219ad8254SMatthew G. Knepley } 7839566063dSJacob Faibussowitsch for (i = 0; i < dim; ++i) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " %g", (double) trcoords[i])); 78419ad8254SMatthew G. Knepley } 78519ad8254SMatthew G. Knepley PetscFunctionReturn(0); 78619ad8254SMatthew G. Knepley } 78719ad8254SMatthew G. Knepley 7887cd05799SMatthew G. Knepley static PetscErrorCode DMPlexView_Ascii(DM dm, PetscViewer viewer) 789552f7358SJed Brown { 790552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 791552f7358SJed Brown DM cdm; 792552f7358SJed Brown PetscSection coordSection; 793552f7358SJed Brown Vec coordinates; 794552f7358SJed Brown PetscViewerFormat format; 795552f7358SJed Brown 796552f7358SJed Brown PetscFunctionBegin; 7979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &cdm)); 7989566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(cdm, &coordSection)); 7999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 8009566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 801552f7358SJed Brown if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 802552f7358SJed Brown const char *name; 803f73eea6eSMatthew G. Knepley PetscInt dim, cellHeight, maxConeSize, maxSupportSize; 8049318fe57SMatthew G. Knepley PetscInt pStart, pEnd, p, numLabels, l; 805552f7358SJed Brown PetscMPIInt rank, size; 806552f7358SJed Brown 8079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 8089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 8099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) dm, &name)); 8109566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8119566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 8129566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8139566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 81463a3b9bcSJacob Faibussowitsch if (name) PetscCall(PetscViewerASCIIPrintf(viewer, "%s in %" PetscInt_FMT " dimension%s:\n", name, dim, dim == 1 ? "" : "s")); 81563a3b9bcSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Mesh in %" PetscInt_FMT " dimension%s:\n", dim, dim == 1 ? "" : "s")); 81663a3b9bcSJacob Faibussowitsch if (cellHeight) PetscCall(PetscViewerASCIIPrintf(viewer, " Cells are at height %" PetscInt_FMT "\n", cellHeight)); 81763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Supports:\n")); 8189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 81963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Max support size: %" PetscInt_FMT "\n", rank, maxSupportSize)); 820552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 821552f7358SJed Brown PetscInt dof, off, s; 822552f7358SJed Brown 8239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, p, &dof)); 8249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, p, &off)); 825552f7358SJed Brown for (s = off; s < off+dof; ++s) { 82663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d]: %" PetscInt_FMT " ----> %" PetscInt_FMT "\n", rank, p, mesh->supports[s])); 827552f7358SJed Brown } 828552f7358SJed Brown } 8299566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 83063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Cones:\n")); 83163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Max cone size: %" PetscInt_FMT "\n", rank, maxConeSize)); 832552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 833552f7358SJed Brown PetscInt dof, off, c; 834552f7358SJed Brown 8359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 8369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 837552f7358SJed Brown for (c = off; c < off+dof; ++c) { 83863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d]: %" PetscInt_FMT " <---- %" PetscInt_FMT " (%" PetscInt_FMT ")\n", rank, p, mesh->cones[c], mesh->coneOrientations[c])); 839552f7358SJed Brown } 840552f7358SJed Brown } 8419566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 8433d2e540fSStefano Zampini if (coordSection && coordinates) { 84419ad8254SMatthew G. Knepley CoordSystem cs = CS_CARTESIAN; 84519ad8254SMatthew G. Knepley const PetscScalar *array; 84619ad8254SMatthew G. Knepley PetscInt Nf, Nc, pStart, pEnd, p; 84719ad8254SMatthew G. Knepley PetscMPIInt rank; 84819ad8254SMatthew G. Knepley const char *name; 84919ad8254SMatthew G. Knepley 8509566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEnum(((PetscObject) viewer)->options, ((PetscObject) viewer)->prefix, "-dm_plex_view_coord_system", CoordSystems, (PetscEnum *) &cs, NULL)); 8519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 8529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(coordSection, &Nf)); 85363a3b9bcSJacob Faibussowitsch PetscCheck(Nf == 1,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Coordinate section should have 1 field, not %" PetscInt_FMT, Nf); 8549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &Nc)); 8559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &pStart, &pEnd)); 8569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) coordinates, &name)); 85763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s with %" PetscInt_FMT " fields\n", name, Nf)); 85863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " field 0 with %" PetscInt_FMT " components\n", Nc)); 8599566063dSJacob Faibussowitsch if (cs != CS_CARTESIAN) PetscCall(PetscViewerASCIIPrintf(viewer, " output coordinate system: %s\n", CoordSystems[cs])); 86019ad8254SMatthew G. Knepley 8619566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &array)); 8629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8639566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "Process %d:\n", rank)); 86419ad8254SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 86519ad8254SMatthew G. Knepley PetscInt dof, off; 86619ad8254SMatthew G. Knepley 8679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, p, &dof)); 8689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, p, &off)); 86963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " (%4" PetscInt_FMT ") dim %2" PetscInt_FMT " offset %3" PetscInt_FMT, p, dof, off)); 8709566063dSJacob Faibussowitsch PetscCall(DMPlexView_Ascii_Coordinates(viewer, cs, dof, &array[off])); 8719566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\n")); 87219ad8254SMatthew G. Knepley } 8739566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8749566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 8759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &array)); 8763d2e540fSStefano Zampini } 8779566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 8789566063dSJacob Faibussowitsch if (numLabels) PetscCall(PetscViewerASCIIPrintf(viewer, "Labels:\n")); 8799318fe57SMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 8809318fe57SMatthew G. Knepley DMLabel label; 8819318fe57SMatthew G. Knepley PetscBool isdepth; 8829318fe57SMatthew G. Knepley const char *name; 8839318fe57SMatthew G. Knepley 8849566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 8859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isdepth)); 8869318fe57SMatthew G. Knepley if (isdepth) continue; 8879566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 8889566063dSJacob Faibussowitsch PetscCall(DMLabelView(label, viewer)); 8899318fe57SMatthew G. Knepley } 890552f7358SJed Brown if (size > 1) { 891552f7358SJed Brown PetscSF sf; 892552f7358SJed Brown 8939566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 8949566063dSJacob Faibussowitsch PetscCall(PetscSFView(sf, viewer)); 895552f7358SJed Brown } 8969566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 897552f7358SJed Brown } else if (format == PETSC_VIEWER_ASCII_LATEX) { 8980588280cSMatthew G. Knepley const char *name, *color; 8990588280cSMatthew G. Knepley const char *defcolors[3] = {"gray", "orange", "green"}; 9000588280cSMatthew G. Knepley const char *deflcolors[4] = {"blue", "cyan", "red", "magenta"}; 901fe1cc32dSStefano Zampini char lname[PETSC_MAX_PATH_LEN]; 902552f7358SJed Brown PetscReal scale = 2.0; 90378081901SStefano Zampini PetscReal tikzscale = 1.0; 904b7f6ffafSMatthew G. Knepley PetscBool useNumbers = PETSC_TRUE, drawNumbers[4], drawColors[4], useLabels, useColors, plotEdges, drawHasse = PETSC_FALSE; 9050588280cSMatthew G. Knepley double tcoords[3]; 906552f7358SJed Brown PetscScalar *coords; 907b7f6ffafSMatthew G. Knepley PetscInt numLabels, l, numColors, numLColors, dim, d, depth, cStart, cEnd, c, vStart, vEnd, v, eStart = 0, eEnd = 0, e, p, n; 908552f7358SJed Brown PetscMPIInt rank, size; 9090588280cSMatthew G. Knepley char **names, **colors, **lcolors; 910b7f6ffafSMatthew G. Knepley PetscBool flg, lflg; 911fe1cc32dSStefano Zampini PetscBT wp = NULL; 912fe1cc32dSStefano Zampini PetscInt pEnd, pStart; 913552f7358SJed Brown 9149566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9159566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 9169566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 9170588280cSMatthew G. Knepley numLabels = PetscMax(numLabels, 10); 9180588280cSMatthew G. Knepley numColors = 10; 9190588280cSMatthew G. Knepley numLColors = 10; 9209566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(numLabels, &names, numColors, &colors, numLColors, &lcolors)); 9219566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_scale", &scale, NULL)); 9229566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_tikzscale", &tikzscale, NULL)); 9239566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_numbers", &useNumbers, NULL)); 924b7f6ffafSMatthew G. Knepley for (d = 0; d < 4; ++d) drawNumbers[d] = useNumbers; 925b7f6ffafSMatthew G. Knepley for (d = 0; d < 4; ++d) drawColors[d] = PETSC_TRUE; 926b7f6ffafSMatthew G. Knepley n = 4; 9279566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBoolArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_numbers_depth", drawNumbers, &n, &flg)); 9281dca8a05SBarry Smith PetscCheck(!flg || n == dim+1,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Number of flags %" PetscInt_FMT " != %" PetscInt_FMT " dim+1", n, dim+1); 9299566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBoolArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_colors_depth", drawColors, &n, &flg)); 9301dca8a05SBarry Smith PetscCheck(!flg || n == dim+1,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Number of flags %" PetscInt_FMT " != %" PetscInt_FMT " dim+1", n, dim+1); 9319566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetStringArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_labels", names, &numLabels, &useLabels)); 9320588280cSMatthew G. Knepley if (!useLabels) numLabels = 0; 9339566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetStringArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_colors", colors, &numColors, &useColors)); 9340588280cSMatthew G. Knepley if (!useColors) { 9350588280cSMatthew G. Knepley numColors = 3; 9369566063dSJacob Faibussowitsch for (c = 0; c < numColors; ++c) PetscCall(PetscStrallocpy(defcolors[c], &colors[c])); 9370588280cSMatthew G. Knepley } 9389566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetStringArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_lcolors", lcolors, &numLColors, &useColors)); 9390588280cSMatthew G. Knepley if (!useColors) { 9400588280cSMatthew G. Knepley numLColors = 4; 9419566063dSJacob Faibussowitsch for (c = 0; c < numLColors; ++c) PetscCall(PetscStrallocpy(deflcolors[c], &lcolors[c])); 9420588280cSMatthew G. Knepley } 9439566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(((PetscObject) viewer)->options, ((PetscObject) viewer)->prefix, "-dm_plex_view_label_filter", lname, sizeof(lname), &lflg)); 944b7f6ffafSMatthew G. Knepley plotEdges = (PetscBool)(depth > 1 && drawNumbers[1] && dim < 3); 9459566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_edges", &plotEdges, &flg)); 9461dca8a05SBarry Smith PetscCheck(!flg || !plotEdges || depth >= dim,PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Mesh must be interpolated"); 947202fd40aSStefano Zampini if (depth < dim) plotEdges = PETSC_FALSE; 9489566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject) viewer)->options, ((PetscObject) viewer)->prefix, "-dm_plex_view_hasse", &drawHasse, NULL)); 949fe1cc32dSStefano Zampini 950fe1cc32dSStefano Zampini /* filter points with labelvalue != labeldefaultvalue */ 9519566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 9529566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 9539566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 1, &eStart, &eEnd)); 9549566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 955fe1cc32dSStefano Zampini if (lflg) { 956fe1cc32dSStefano Zampini DMLabel lbl; 957fe1cc32dSStefano Zampini 9589566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &lbl)); 959fe1cc32dSStefano Zampini if (lbl) { 960fe1cc32dSStefano Zampini PetscInt val, defval; 961fe1cc32dSStefano Zampini 9629566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(lbl, &defval)); 9639566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(pEnd-pStart, &wp)); 964fe1cc32dSStefano Zampini for (c = pStart; c < pEnd; c++) { 965fe1cc32dSStefano Zampini PetscInt *closure = NULL; 966fe1cc32dSStefano Zampini PetscInt closureSize; 967fe1cc32dSStefano Zampini 9689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(lbl, c, &val)); 969fe1cc32dSStefano Zampini if (val == defval) continue; 970fe1cc32dSStefano Zampini 9719566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 972fe1cc32dSStefano Zampini for (p = 0; p < closureSize*2; p += 2) { 9739566063dSJacob Faibussowitsch PetscCall(PetscBTSet(wp, closure[p] - pStart)); 974fe1cc32dSStefano Zampini } 9759566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 976fe1cc32dSStefano Zampini } 977fe1cc32dSStefano Zampini } 978fe1cc32dSStefano Zampini } 979fe1cc32dSStefano Zampini 9809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 9819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) dm, &name)); 9839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\ 9840588280cSMatthew G. Knepley \\documentclass[tikz]{standalone}\n\n\ 985552f7358SJed Brown \\usepackage{pgflibraryshapes}\n\ 986552f7358SJed Brown \\usetikzlibrary{backgrounds}\n\ 987552f7358SJed Brown \\usetikzlibrary{arrows}\n\ 9885f80ce2aSJacob Faibussowitsch \\begin{document}\n")); 9890588280cSMatthew G. Knepley if (size > 1) { 9909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s for process ", name)); 991770b213bSMatthew G Knepley for (p = 0; p < size; ++p) { 99263a3b9bcSJacob Faibussowitsch if (p) PetscCall(PetscViewerASCIIPrintf(viewer, (p == size-1) ? ", and " : ", ")); 99363a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "{\\textcolor{%s}%" PetscInt_FMT "}", colors[p%numColors], p)); 994770b213bSMatthew G Knepley } 9959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, ".\n\n\n")); 9960588280cSMatthew G. Knepley } 997b7f6ffafSMatthew G. Knepley if (drawHasse) { 998b7f6ffafSMatthew G. Knepley PetscInt maxStratum = PetscMax(vEnd-vStart, PetscMax(eEnd-eStart, cEnd-cStart)); 999b7f6ffafSMatthew G. Knepley 100063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\vStart}{%" PetscInt_FMT "}\n", vStart)); 100163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\vEnd}{%" PetscInt_FMT "}\n", vEnd-1)); 100263a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\numVertices}{%" PetscInt_FMT "}\n", vEnd-vStart)); 10039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\vShift}{%.2f}\n", 3 + (maxStratum-(vEnd-vStart))/2.)); 100463a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\eStart}{%" PetscInt_FMT "}\n", eStart)); 100563a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\eEnd}{%" PetscInt_FMT "}\n", eEnd-1)); 10069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\eShift}{%.2f}\n", 3 + (maxStratum-(eEnd-eStart))/2.)); 100763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\numEdges}{%" PetscInt_FMT "}\n", eEnd-eStart)); 100863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\cStart}{%" PetscInt_FMT "}\n", cStart)); 100963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\cEnd}{%" PetscInt_FMT "}\n", cEnd-1)); 101063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\numCells}{%" PetscInt_FMT "}\n", cEnd-cStart)); 10119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\cShift}{%.2f}\n", 3 + (maxStratum-(cEnd-cStart))/2.)); 1012b7f6ffafSMatthew G. Knepley } 10139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\begin{tikzpicture}[scale = %g,font=\\fontsize{8}{8}\\selectfont]\n", (double) tikzscale)); 1014fe1cc32dSStefano Zampini 1015552f7358SJed Brown /* Plot vertices */ 10169566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 10179566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1018552f7358SJed Brown for (v = vStart; v < vEnd; ++v) { 1019552f7358SJed Brown PetscInt off, dof, d; 10200588280cSMatthew G. Knepley PetscBool isLabeled = PETSC_FALSE; 1021552f7358SJed Brown 1022fe1cc32dSStefano Zampini if (wp && !PetscBTLookup(wp,v - pStart)) continue; 10239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 10249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 10259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\path (")); 102663a3b9bcSJacob Faibussowitsch PetscCheck(dof <= 3,PETSC_COMM_SELF,PETSC_ERR_PLIB,"coordSection vertex %" PetscInt_FMT " has dof %" PetscInt_FMT " > 3",v,dof); 10270588280cSMatthew G. Knepley for (d = 0; d < dof; ++d) { 10280588280cSMatthew G. Knepley tcoords[d] = (double) (scale*PetscRealPart(coords[off+d])); 1029c068d9bbSLisandro Dalcin tcoords[d] = PetscAbs(tcoords[d]) < 1e-10 ? 0.0 : tcoords[d]; 10300588280cSMatthew G. Knepley } 10310588280cSMatthew G. Knepley /* Rotate coordinates since PGF makes z point out of the page instead of up */ 10320588280cSMatthew G. Knepley if (dim == 3) {PetscReal tmp = tcoords[1]; tcoords[1] = tcoords[2]; tcoords[2] = -tmp;} 1033552f7358SJed Brown for (d = 0; d < dof; ++d) { 10349566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ",")); 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "%g", (double) tcoords[d])); 1036552f7358SJed Brown } 1037b7f6ffafSMatthew G. Knepley if (drawHasse) color = colors[0%numColors]; 1038b7f6ffafSMatthew G. Knepley else color = colors[rank%numColors]; 10390588280cSMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 10400588280cSMatthew G. Knepley PetscInt val; 10419566063dSJacob Faibussowitsch PetscCall(DMGetLabelValue(dm, names[l], v, &val)); 10420588280cSMatthew G. Knepley if (val >= 0) {color = lcolors[l%numLColors]; isLabeled = PETSC_TRUE; break;} 10430588280cSMatthew G. Knepley } 1044b7f6ffafSMatthew G. Knepley if (drawNumbers[0]) { 104563a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [draw,shape=circle,color=%s] {%" PetscInt_FMT "};\n", v, rank, color, v)); 1046b7f6ffafSMatthew G. Knepley } else if (drawColors[0]) { 104763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [fill,inner sep=%dpt,shape=circle,color=%s] {};\n", v, rank, !isLabeled ? 1 : 2, color)); 1048b7f6ffafSMatthew G. Knepley } else { 104963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [] {};\n", v, rank)); 10500588280cSMatthew G. Knepley } 1051552f7358SJed Brown } 10529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 10539566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 1054b7f6ffafSMatthew G. Knepley /* Plot edges */ 1055b7f6ffafSMatthew G. Knepley if (plotEdges) { 10569566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 10579566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\path\n")); 1058b7f6ffafSMatthew G. Knepley for (e = eStart; e < eEnd; ++e) { 1059b7f6ffafSMatthew G. Knepley const PetscInt *cone; 1060b7f6ffafSMatthew G. Knepley PetscInt coneSize, offA, offB, dof, d; 1061b7f6ffafSMatthew G. Knepley 1062b7f6ffafSMatthew G. Knepley if (wp && !PetscBTLookup(wp,e - pStart)) continue; 10639566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, e, &coneSize)); 106463a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " cone should have two vertices, not %" PetscInt_FMT, e, coneSize); 10659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, e, &cone)); 10669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, cone[0], &dof)); 10679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, cone[0], &offA)); 10689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, cone[1], &offB)); 10699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "(")); 1070b7f6ffafSMatthew G. Knepley for (d = 0; d < dof; ++d) { 1071b7f6ffafSMatthew G. Knepley tcoords[d] = (double) (0.5*scale*PetscRealPart(coords[offA+d]+coords[offB+d])); 1072b7f6ffafSMatthew G. Knepley tcoords[d] = PetscAbs(tcoords[d]) < 1e-10 ? 0.0 : tcoords[d]; 1073b7f6ffafSMatthew G. Knepley } 1074b7f6ffafSMatthew G. Knepley /* Rotate coordinates since PGF makes z point out of the page instead of up */ 1075b7f6ffafSMatthew G. Knepley if (dim == 3) {PetscReal tmp = tcoords[1]; tcoords[1] = tcoords[2]; tcoords[2] = -tmp;} 1076b7f6ffafSMatthew G. Knepley for (d = 0; d < dof; ++d) { 10779566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ",")); 10789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "%g", (double)tcoords[d])); 1079b7f6ffafSMatthew G. Knepley } 1080b7f6ffafSMatthew G. Knepley if (drawHasse) color = colors[1%numColors]; 1081b7f6ffafSMatthew G. Knepley else color = colors[rank%numColors]; 1082b7f6ffafSMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 1083b7f6ffafSMatthew G. Knepley PetscInt val; 10849566063dSJacob Faibussowitsch PetscCall(DMGetLabelValue(dm, names[l], v, &val)); 1085b7f6ffafSMatthew G. Knepley if (val >= 0) {color = lcolors[l%numLColors]; break;} 1086b7f6ffafSMatthew G. Knepley } 108763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [draw,shape=circle,color=%s] {%" PetscInt_FMT "} --\n", e, rank, color, e)); 1088b7f6ffafSMatthew G. Knepley } 10899566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 10909566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10919566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "(0,0);\n")); 1092b7f6ffafSMatthew G. Knepley } 1093846a3e8bSMatthew G. Knepley /* Plot cells */ 1094b7f6ffafSMatthew G. Knepley if (dim == 3 || !drawNumbers[1]) { 1095846a3e8bSMatthew G. Knepley for (e = eStart; e < eEnd; ++e) { 1096846a3e8bSMatthew G. Knepley const PetscInt *cone; 1097846a3e8bSMatthew G. Knepley 1098fe1cc32dSStefano Zampini if (wp && !PetscBTLookup(wp,e - pStart)) continue; 1099846a3e8bSMatthew G. Knepley color = colors[rank%numColors]; 1100846a3e8bSMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 1101846a3e8bSMatthew G. Knepley PetscInt val; 11029566063dSJacob Faibussowitsch PetscCall(DMGetLabelValue(dm, names[l], e, &val)); 1103846a3e8bSMatthew G. Knepley if (val >= 0) {color = lcolors[l%numLColors]; break;} 1104846a3e8bSMatthew G. Knepley } 11059566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, e, &cone)); 110663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\draw[color=%s] (%" PetscInt_FMT "_%d) -- (%" PetscInt_FMT "_%d);\n", color, cone[0], rank, cone[1], rank)); 1107846a3e8bSMatthew G. Knepley } 1108846a3e8bSMatthew G. Knepley } else { 1109b7f6ffafSMatthew G. Knepley DMPolytopeType ct; 1110846a3e8bSMatthew G. Knepley 1111b7f6ffafSMatthew G. Knepley /* Drawing a 2D polygon */ 1112b7f6ffafSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1113fe1cc32dSStefano Zampini if (wp && !PetscBTLookup(wp, c - pStart)) continue; 11149566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &ct)); 1115b7f6ffafSMatthew G. Knepley if (ct == DM_POLYTOPE_SEG_PRISM_TENSOR || 1116b7f6ffafSMatthew G. Knepley ct == DM_POLYTOPE_TRI_PRISM_TENSOR || 1117b7f6ffafSMatthew G. Knepley ct == DM_POLYTOPE_QUAD_PRISM_TENSOR) { 1118b7f6ffafSMatthew G. Knepley const PetscInt *cone; 1119b7f6ffafSMatthew G. Knepley PetscInt coneSize, e; 1120b7f6ffafSMatthew G. Knepley 11219566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 11229566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 1123b7f6ffafSMatthew G. Knepley for (e = 0; e < coneSize; ++e) { 1124b7f6ffafSMatthew G. Knepley const PetscInt *econe; 1125b7f6ffafSMatthew G. Knepley 11269566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[e], &econe)); 112763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\draw[color=%s] (%" PetscInt_FMT "_%d) -- (%" PetscInt_FMT "_%d) -- (%" PetscInt_FMT "_%d);\n", colors[rank%numColors], econe[0], rank, cone[e], rank, econe[1], rank)); 1128b7f6ffafSMatthew G. Knepley } 1129b7f6ffafSMatthew G. Knepley } else { 1130b7f6ffafSMatthew G. Knepley PetscInt *closure = NULL; 1131b7f6ffafSMatthew G. Knepley PetscInt closureSize, Nv = 0, v; 1132b7f6ffafSMatthew G. Knepley 11339566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 1134846a3e8bSMatthew G. Knepley for (p = 0; p < closureSize*2; p += 2) { 1135846a3e8bSMatthew G. Knepley const PetscInt point = closure[p]; 1136846a3e8bSMatthew G. Knepley 1137b7f6ffafSMatthew G. Knepley if ((point >= vStart) && (point < vEnd)) closure[Nv++] = point; 1138846a3e8bSMatthew G. Knepley } 11399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\draw[color=%s] ", colors[rank%numColors])); 1140b7f6ffafSMatthew G. Knepley for (v = 0; v <= Nv; ++v) { 1141b7f6ffafSMatthew G. Knepley const PetscInt vertex = closure[v%Nv]; 1142b7f6ffafSMatthew G. Knepley 1143b7f6ffafSMatthew G. Knepley if (v > 0) { 1144b7f6ffafSMatthew G. Knepley if (plotEdges) { 1145b7f6ffafSMatthew G. Knepley const PetscInt *edge; 1146b7f6ffafSMatthew G. Knepley PetscInt endpoints[2], ne; 1147b7f6ffafSMatthew G. Knepley 1148b7f6ffafSMatthew G. Knepley endpoints[0] = closure[v-1]; endpoints[1] = vertex; 11499566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, 2, endpoints, &ne, &edge)); 115063a3b9bcSJacob Faibussowitsch PetscCheck(ne == 1,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find edge for vertices %" PetscInt_FMT ", %" PetscInt_FMT, endpoints[0], endpoints[1]); 115163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " -- (%" PetscInt_FMT "_%d) -- ", edge[0], rank)); 11529566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, 2, endpoints, &ne, &edge)); 1153b7f6ffafSMatthew G. Knepley } else { 11549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " -- ")); 1155b7f6ffafSMatthew G. Knepley } 1156b7f6ffafSMatthew G. Knepley } 115763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "(%" PetscInt_FMT "_%d)", vertex, rank)); 1158b7f6ffafSMatthew G. Knepley } 11599566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ";\n")); 11609566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 1161846a3e8bSMatthew G. Knepley } 1162846a3e8bSMatthew G. Knepley } 1163b7f6ffafSMatthew G. Knepley } 11649566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1165846a3e8bSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1166846a3e8bSMatthew G. Knepley double ccoords[3] = {0.0, 0.0, 0.0}; 1167846a3e8bSMatthew G. Knepley PetscBool isLabeled = PETSC_FALSE; 1168846a3e8bSMatthew G. Knepley PetscInt *closure = NULL; 1169846a3e8bSMatthew G. Knepley PetscInt closureSize, dof, d, n = 0; 1170846a3e8bSMatthew G. Knepley 1171fe1cc32dSStefano Zampini if (wp && !PetscBTLookup(wp,c - pStart)) continue; 11729566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 11739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\path (")); 1174846a3e8bSMatthew G. Knepley for (p = 0; p < closureSize*2; p += 2) { 1175846a3e8bSMatthew G. Knepley const PetscInt point = closure[p]; 1176846a3e8bSMatthew G. Knepley PetscInt off; 1177846a3e8bSMatthew G. Knepley 1178846a3e8bSMatthew G. Knepley if ((point < vStart) || (point >= vEnd)) continue; 11799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, point, &dof)); 11809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, point, &off)); 1181846a3e8bSMatthew G. Knepley for (d = 0; d < dof; ++d) { 1182846a3e8bSMatthew G. Knepley tcoords[d] = (double) (scale*PetscRealPart(coords[off+d])); 1183846a3e8bSMatthew G. Knepley tcoords[d] = PetscAbs(tcoords[d]) < 1e-10 ? 0.0 : tcoords[d]; 1184846a3e8bSMatthew G. Knepley } 1185846a3e8bSMatthew G. Knepley /* Rotate coordinates since PGF makes z point out of the page instead of up */ 1186846a3e8bSMatthew G. Knepley if (dof == 3) {PetscReal tmp = tcoords[1]; tcoords[1] = tcoords[2]; tcoords[2] = -tmp;} 1187846a3e8bSMatthew G. Knepley for (d = 0; d < dof; ++d) {ccoords[d] += tcoords[d];} 1188846a3e8bSMatthew G. Knepley ++n; 1189846a3e8bSMatthew G. Knepley } 1190846a3e8bSMatthew G. Knepley for (d = 0; d < dof; ++d) {ccoords[d] /= n;} 11919566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 1192846a3e8bSMatthew G. Knepley for (d = 0; d < dof; ++d) { 11939566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ",")); 11949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "%g", (double) ccoords[d])); 1195846a3e8bSMatthew G. Knepley } 1196b7f6ffafSMatthew G. Knepley if (drawHasse) color = colors[depth%numColors]; 1197b7f6ffafSMatthew G. Knepley else color = colors[rank%numColors]; 1198846a3e8bSMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 1199846a3e8bSMatthew G. Knepley PetscInt val; 12009566063dSJacob Faibussowitsch PetscCall(DMGetLabelValue(dm, names[l], c, &val)); 1201846a3e8bSMatthew G. Knepley if (val >= 0) {color = lcolors[l%numLColors]; isLabeled = PETSC_TRUE; break;} 1202846a3e8bSMatthew G. Knepley } 1203b7f6ffafSMatthew G. Knepley if (drawNumbers[dim]) { 120463a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [draw,shape=circle,color=%s] {%" PetscInt_FMT "};\n", c, rank, color, c)); 1205b7f6ffafSMatthew G. Knepley } else if (drawColors[dim]) { 120663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [fill,inner sep=%dpt,shape=circle,color=%s] {};\n", c, rank, !isLabeled ? 1 : 2, color)); 1207b7f6ffafSMatthew G. Knepley } else { 120863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [] {};\n", c, rank)); 1209846a3e8bSMatthew G. Knepley } 1210846a3e8bSMatthew G. Knepley } 12119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1212b7f6ffafSMatthew G. Knepley if (drawHasse) { 1213b7f6ffafSMatthew G. Knepley color = colors[depth%numColors]; 12149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Cells\n")); 12159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\foreach \\c in {\\cStart,...,\\cEnd}\n")); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "{\n")); 12179566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " \\node(\\c_%d) [draw,shape=circle,color=%s,minimum size = 6mm] at (\\cShift+\\c-\\cStart,0) {\\c};\n", rank, color)); 12189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "}\n")); 1219552f7358SJed Brown 1220b7f6ffafSMatthew G. Knepley color = colors[1%numColors]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Edges\n")); 12229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\foreach \\e in {\\eStart,...,\\eEnd}\n")); 12239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "{\n")); 12249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " \\node(\\e_%d) [draw,shape=circle,color=%s,minimum size = 6mm] at (\\eShift+\\e-\\eStart,1) {\\e};\n", rank, color)); 12259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "}\n")); 1226b7f6ffafSMatthew G. Knepley 1227b7f6ffafSMatthew G. Knepley color = colors[0%numColors]; 12289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Vertices\n")); 12299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\foreach \\v in {\\vStart,...,\\vEnd}\n")); 12309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "{\n")); 12319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " \\node(\\v_%d) [draw,shape=circle,color=%s,minimum size = 6mm] at (\\vShift+\\v-\\vStart,2) {\\v};\n", rank, color)); 12329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "}\n")); 1233b7f6ffafSMatthew G. Knepley 1234b7f6ffafSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 1235b7f6ffafSMatthew G. Knepley const PetscInt *cone; 1236b7f6ffafSMatthew G. Knepley PetscInt coneSize, cp; 1237b7f6ffafSMatthew G. Knepley 12389566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 12399566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1240b7f6ffafSMatthew G. Knepley for (cp = 0; cp < coneSize; ++cp) { 124163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\draw[->, shorten >=1pt] (%" PetscInt_FMT "_%d) -- (%" PetscInt_FMT "_%d);\n", cone[cp], rank, p, rank)); 1242552f7358SJed Brown } 12430588280cSMatthew G. Knepley } 12440588280cSMatthew G. Knepley } 12459566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 12479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\end{tikzpicture}\n")); 124863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\end{document}\n")); 12499566063dSJacob Faibussowitsch for (l = 0; l < numLabels; ++l) PetscCall(PetscFree(names[l])); 12509566063dSJacob Faibussowitsch for (c = 0; c < numColors; ++c) PetscCall(PetscFree(colors[c])); 12519566063dSJacob Faibussowitsch for (c = 0; c < numLColors; ++c) PetscCall(PetscFree(lcolors[c])); 12529566063dSJacob Faibussowitsch PetscCall(PetscFree3(names, colors, lcolors)); 12539566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&wp)); 12540f7d6e4aSStefano Zampini } else if (format == PETSC_VIEWER_LOAD_BALANCE) { 12550f7d6e4aSStefano Zampini Vec cown,acown; 12560f7d6e4aSStefano Zampini VecScatter sct; 12570f7d6e4aSStefano Zampini ISLocalToGlobalMapping g2l; 12580f7d6e4aSStefano Zampini IS gid,acis; 12590f7d6e4aSStefano Zampini MPI_Comm comm,ncomm = MPI_COMM_NULL; 12600f7d6e4aSStefano Zampini MPI_Group ggroup,ngroup; 12610f7d6e4aSStefano Zampini PetscScalar *array,nid; 12620f7d6e4aSStefano Zampini const PetscInt *idxs; 12630f7d6e4aSStefano Zampini PetscInt *idxs2,*start,*adjacency,*work; 12640f7d6e4aSStefano Zampini PetscInt64 lm[3],gm[3]; 12650f7d6e4aSStefano Zampini PetscInt i,c,cStart,cEnd,cum,numVertices,ect,ectn,cellHeight; 12660f7d6e4aSStefano Zampini PetscMPIInt d1,d2,rank; 12670f7d6e4aSStefano Zampini 12689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 12699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 1270b674149eSJunchao Zhang #if defined(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY) 12719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_split_type(comm,MPI_COMM_TYPE_SHARED,rank,MPI_INFO_NULL,&ncomm)); 12720f7d6e4aSStefano Zampini #endif 12730f7d6e4aSStefano Zampini if (ncomm != MPI_COMM_NULL) { 12749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(comm,&ggroup)); 12759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(ncomm,&ngroup)); 12760f7d6e4aSStefano Zampini d1 = 0; 12779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_translate_ranks(ngroup,1,&d1,ggroup,&d2)); 12780f7d6e4aSStefano Zampini nid = d2; 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&ggroup)); 12809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&ngroup)); 12819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free(&ncomm)); 12820f7d6e4aSStefano Zampini } else nid = 0.0; 12830f7d6e4aSStefano Zampini 12840f7d6e4aSStefano Zampini /* Get connectivity */ 12859566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm,&cellHeight)); 12869566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePartitionerGraph(dm,cellHeight,&numVertices,&start,&adjacency,&gid)); 12870f7d6e4aSStefano Zampini 12880f7d6e4aSStefano Zampini /* filter overlapped local cells */ 12899566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm,cellHeight,&cStart,&cEnd)); 12909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gid,&idxs)); 12919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(gid,&cum)); 12929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cum,&idxs2)); 12930f7d6e4aSStefano Zampini for (c = cStart, cum = 0; c < cEnd; c++) { 12940f7d6e4aSStefano Zampini if (idxs[c-cStart] < 0) continue; 12950f7d6e4aSStefano Zampini idxs2[cum++] = idxs[c-cStart]; 12960f7d6e4aSStefano Zampini } 12979566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gid,&idxs)); 129863a3b9bcSJacob Faibussowitsch PetscCheck(numVertices == cum,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected %" PetscInt_FMT " != %" PetscInt_FMT,numVertices,cum); 12999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gid)); 13009566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm,numVertices,idxs2,PETSC_OWN_POINTER,&gid)); 13010f7d6e4aSStefano Zampini 13020f7d6e4aSStefano Zampini /* support for node-aware cell locality */ 13039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm,start[numVertices],adjacency,PETSC_USE_POINTER,&acis)); 13049566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF,start[numVertices],&acown)); 13059566063dSJacob Faibussowitsch PetscCall(VecCreateMPI(comm,numVertices,PETSC_DECIDE,&cown)); 13069566063dSJacob Faibussowitsch PetscCall(VecGetArray(cown,&array)); 13070f7d6e4aSStefano Zampini for (c = 0; c < numVertices; c++) array[c] = nid; 13089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cown,&array)); 13099566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(cown,acis,acown,NULL,&sct)); 13109566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sct,cown,acown,INSERT_VALUES,SCATTER_FORWARD)); 13119566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sct,cown,acown,INSERT_VALUES,SCATTER_FORWARD)); 13129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&acis)); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sct)); 13149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cown)); 13150f7d6e4aSStefano Zampini 13160f7d6e4aSStefano Zampini /* compute edgeCut */ 13170f7d6e4aSStefano Zampini for (c = 0, cum = 0; c < numVertices; c++) cum = PetscMax(cum,start[c+1]-start[c]); 13189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cum,&work)); 13199566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(gid,&g2l)); 13209566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(g2l,ISLOCALTOGLOBALMAPPINGHASH)); 13219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gid)); 13229566063dSJacob Faibussowitsch PetscCall(VecGetArray(acown,&array)); 13230f7d6e4aSStefano Zampini for (c = 0, ect = 0, ectn = 0; c < numVertices; c++) { 13240f7d6e4aSStefano Zampini PetscInt totl; 13250f7d6e4aSStefano Zampini 13260f7d6e4aSStefano Zampini totl = start[c+1]-start[c]; 13279566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(g2l,IS_GTOLM_MASK,totl,adjacency+start[c],NULL,work)); 13280f7d6e4aSStefano Zampini for (i = 0; i < totl; i++) { 13290f7d6e4aSStefano Zampini if (work[i] < 0) { 13300f7d6e4aSStefano Zampini ect += 1; 13310f7d6e4aSStefano Zampini ectn += (array[i + start[c]] != nid) ? 0 : 1; 13320f7d6e4aSStefano Zampini } 13330f7d6e4aSStefano Zampini } 13340f7d6e4aSStefano Zampini } 13359566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 13369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(acown,&array)); 13370f7d6e4aSStefano Zampini lm[0] = numVertices > 0 ? numVertices : PETSC_MAX_INT; 13380f7d6e4aSStefano Zampini lm[1] = -numVertices; 13391c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lm,gm,2,MPIU_INT64,MPI_MIN,comm)); 134063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," Cell balance: %.2f (max %" PetscInt_FMT ", min %" PetscInt_FMT,-((double)gm[1])/((double)gm[0]),-(PetscInt)gm[1],(PetscInt)gm[0])); 13410f7d6e4aSStefano Zampini lm[0] = ect; /* edgeCut */ 13420f7d6e4aSStefano Zampini lm[1] = ectn; /* node-aware edgeCut */ 13430f7d6e4aSStefano Zampini lm[2] = numVertices > 0 ? 0 : 1; /* empty processes */ 13441c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lm,gm,3,MPIU_INT64,MPI_SUM,comm)); 134563a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,", empty %" PetscInt_FMT ")\n",(PetscInt)gm[2])); 1346b674149eSJunchao Zhang #if defined(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY) 134763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," Edge Cut: %" PetscInt_FMT " (on node %.3f)\n",(PetscInt)(gm[0]/2),gm[0] ? ((double)(gm[1]))/((double)gm[0]) : 1.)); 13480f7d6e4aSStefano Zampini #else 134963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," Edge Cut: %" PetscInt_FMT " (on node %.3f)\n",(PetscInt)(gm[0]/2),0.0)); 13500f7d6e4aSStefano Zampini #endif 13519566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&g2l)); 13529566063dSJacob Faibussowitsch PetscCall(PetscFree(start)); 13539566063dSJacob Faibussowitsch PetscCall(PetscFree(adjacency)); 13549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&acown)); 1355552f7358SJed Brown } else { 1356412e9a14SMatthew G. Knepley const char *name; 1357d80ece95SMatthew G. Knepley PetscInt *sizes, *hybsizes, *ghostsizes; 1358412e9a14SMatthew G. Knepley PetscInt locDepth, depth, cellHeight, dim, d; 1359d80ece95SMatthew G. Knepley PetscInt pStart, pEnd, p, gcStart, gcEnd, gcNum; 1360ca7bf7eeSMatthew G. Knepley PetscInt numLabels, l, maxSize = 17; 13619318fe57SMatthew G. Knepley DMPolytopeType ct0 = DM_POLYTOPE_UNKNOWN; 1362412e9a14SMatthew G. Knepley MPI_Comm comm; 1363412e9a14SMatthew G. Knepley PetscMPIInt size, rank; 1364552f7358SJed Brown 13659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 13669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 13679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 13689566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 13699566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 13709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) dm, &name)); 137163a3b9bcSJacob Faibussowitsch if (name) PetscCall(PetscViewerASCIIPrintf(viewer, "%s in %" PetscInt_FMT " dimension%s:\n", name, dim, dim == 1 ? "" : "s")); 137263a3b9bcSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Mesh in %" PetscInt_FMT " dimension%s:\n", dim, dim == 1 ? "" : "s")); 137363a3b9bcSJacob Faibussowitsch if (cellHeight) PetscCall(PetscViewerASCIIPrintf(viewer, " Cells are at height %" PetscInt_FMT "\n", cellHeight)); 13749566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &locDepth)); 13751c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&locDepth, &depth, 1, MPIU_INT, MPI_MAX, comm)); 13769566063dSJacob Faibussowitsch PetscCall(DMPlexGetGhostCellStratum(dm, &gcStart, &gcEnd)); 1377d80ece95SMatthew G. Knepley gcNum = gcEnd - gcStart; 13789566063dSJacob Faibussowitsch if (size < maxSize) PetscCall(PetscCalloc3(size, &sizes, size, &hybsizes, size, &ghostsizes)); 13799566063dSJacob Faibussowitsch else PetscCall(PetscCalloc3(3, &sizes, 3, &hybsizes, 3, &ghostsizes)); 1380412e9a14SMatthew G. Knepley for (d = 0; d <= depth; d++) { 1381412e9a14SMatthew G. Knepley PetscInt Nc[2] = {0, 0}, ict; 1382412e9a14SMatthew G. Knepley 13839566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 13849566063dSJacob Faibussowitsch if (pStart < pEnd) PetscCall(DMPlexGetCellType(dm, pStart, &ct0)); 1385412e9a14SMatthew G. Knepley ict = ct0; 13869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&ict, 1, MPIU_INT, 0, comm)); 1387412e9a14SMatthew G. Knepley ct0 = (DMPolytopeType) ict; 1388412e9a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 1389412e9a14SMatthew G. Knepley DMPolytopeType ct; 1390412e9a14SMatthew G. Knepley 13919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 1392412e9a14SMatthew G. Knepley if (ct == ct0) ++Nc[0]; 1393412e9a14SMatthew G. Knepley else ++Nc[1]; 1394412e9a14SMatthew G. Knepley } 1395ca7bf7eeSMatthew G. Knepley if (size < maxSize) { 13969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Gather(&Nc[0], 1, MPIU_INT, sizes, 1, MPIU_INT, 0, comm)); 13979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Gather(&Nc[1], 1, MPIU_INT, hybsizes, 1, MPIU_INT, 0, comm)); 13989566063dSJacob Faibussowitsch if (d == depth) PetscCallMPI(MPI_Gather(&gcNum, 1, MPIU_INT, ghostsizes, 1, MPIU_INT, 0, comm)); 139963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " Number of %" PetscInt_FMT "-cells per rank:", (depth == 1) && d ? dim : d)); 1400834065abSMatthew G. Knepley for (p = 0; p < size; ++p) { 1401dd400576SPatrick Sanan if (rank == 0) { 140263a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT, sizes[p]+hybsizes[p])); 140363a3b9bcSJacob Faibussowitsch if (hybsizes[p] > 0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ")", hybsizes[p])); 140463a3b9bcSJacob Faibussowitsch if (ghostsizes[p] > 0) PetscCall(PetscViewerASCIIPrintf(viewer, " [%" PetscInt_FMT "]", ghostsizes[p])); 1405834065abSMatthew G. Knepley } 1406cbb7f117SMark Adams } 1407ca7bf7eeSMatthew G. Knepley } else { 1408ca7bf7eeSMatthew G. Knepley PetscInt locMinMax[2]; 1409ca7bf7eeSMatthew G. Knepley 1410ca7bf7eeSMatthew G. Knepley locMinMax[0] = Nc[0]+Nc[1]; locMinMax[1] = Nc[0]+Nc[1]; 14119566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(comm, locMinMax, sizes)); 1412ca7bf7eeSMatthew G. Knepley locMinMax[0] = Nc[1]; locMinMax[1] = Nc[1]; 14139566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(comm, locMinMax, hybsizes)); 1414ca7bf7eeSMatthew G. Knepley if (d == depth) { 1415ca7bf7eeSMatthew G. Knepley locMinMax[0] = gcNum; locMinMax[1] = gcNum; 14169566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(comm, locMinMax, ghostsizes)); 1417ca7bf7eeSMatthew G. Knepley } 141863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " Min/Max of %" PetscInt_FMT "-cells per rank:", (depth == 1) && d ? dim : d)); 14199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT "/%" PetscInt_FMT, sizes[0], sizes[1])); 14209566063dSJacob Faibussowitsch if (hybsizes[0] > 0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT "/%" PetscInt_FMT ")", hybsizes[0], hybsizes[1])); 14219566063dSJacob Faibussowitsch if (ghostsizes[0] > 0) PetscCall(PetscViewerASCIIPrintf(viewer, " [%" PetscInt_FMT "/%" PetscInt_FMT "]", ghostsizes[0], ghostsizes[1])); 1422ca7bf7eeSMatthew G. Knepley } 14239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1424552f7358SJed Brown } 14259566063dSJacob Faibussowitsch PetscCall(PetscFree3(sizes, hybsizes, ghostsizes)); 14269318fe57SMatthew G. Knepley { 14279318fe57SMatthew G. Knepley const PetscReal *maxCell; 14289318fe57SMatthew G. Knepley const PetscReal *L; 14299318fe57SMatthew G. Knepley const DMBoundaryType *bd; 14309318fe57SMatthew G. Knepley PetscBool per, localized; 14319318fe57SMatthew G. Knepley 14329566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &per, &maxCell, &L, &bd)); 14339566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocalized(dm, &localized)); 14349318fe57SMatthew G. Knepley if (per) { 14359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Periodic mesh (")); 14369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 14379318fe57SMatthew G. Knepley for (d = 0; d < dim; ++d) { 14389566063dSJacob Faibussowitsch if (bd && d > 0) PetscCall(PetscViewerASCIIPrintf(viewer, ", ")); 14399566063dSJacob Faibussowitsch if (bd) PetscCall(PetscViewerASCIIPrintf(viewer, "%s", DMBoundaryTypes[bd[d]])); 14409318fe57SMatthew G. Knepley } 14419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, ") coordinates %s\n", localized ? "localized" : "not localized")); 14429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 14439318fe57SMatthew G. Knepley } 14449318fe57SMatthew G. Knepley } 14459566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 14469566063dSJacob Faibussowitsch if (numLabels) PetscCall(PetscViewerASCIIPrintf(viewer, "Labels:\n")); 1447a57dd577SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1448a57dd577SMatthew G Knepley DMLabel label; 1449a57dd577SMatthew G Knepley const char *name; 1450a57dd577SMatthew G Knepley IS valueIS; 1451a57dd577SMatthew G Knepley const PetscInt *values; 1452a57dd577SMatthew G Knepley PetscInt numValues, v; 1453a57dd577SMatthew G Knepley 14549566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 14559566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 14569566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 145763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %s: %" PetscInt_FMT " strata with value/size (", name, numValues)); 14589566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 14599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 14609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1461a57dd577SMatthew G Knepley for (v = 0; v < numValues; ++v) { 1462a57dd577SMatthew G Knepley PetscInt size; 1463a57dd577SMatthew G Knepley 14649566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &size)); 14659566063dSJacob Faibussowitsch if (v > 0) PetscCall(PetscViewerASCIIPrintf(viewer, ", ")); 146663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " (%" PetscInt_FMT ")", values[v], size)); 1467a57dd577SMatthew G Knepley } 14689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, ")\n")); 14699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 14709566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 14719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1472a57dd577SMatthew G Knepley } 1473c1cad2e7SMatthew G. Knepley { 1474c1cad2e7SMatthew G. Knepley char **labelNames; 1475c1cad2e7SMatthew G. Knepley PetscInt Nl = numLabels; 1476c1cad2e7SMatthew G. Knepley PetscBool flg; 1477c1cad2e7SMatthew G. Knepley 14789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nl, &labelNames)); 14799566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetStringArray(((PetscObject) dm)->options, ((PetscObject) dm)->prefix, "-dm_plex_view_labels", labelNames, &Nl, &flg)); 1480c1cad2e7SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 1481c1cad2e7SMatthew G. Knepley DMLabel label; 1482c1cad2e7SMatthew G. Knepley 14839566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, labelNames[l], &flg)); 1484c1cad2e7SMatthew G. Knepley if (flg) { 14859566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, labelNames[l], &label)); 14869566063dSJacob Faibussowitsch PetscCall(DMLabelView(label, viewer)); 1487c1cad2e7SMatthew G. Knepley } 14889566063dSJacob Faibussowitsch PetscCall(PetscFree(labelNames[l])); 1489c1cad2e7SMatthew G. Knepley } 14909566063dSJacob Faibussowitsch PetscCall(PetscFree(labelNames)); 1491c1cad2e7SMatthew G. Knepley } 149234aa8a36SMatthew G. Knepley /* If no fields are specified, people do not want to see adjacency */ 149334aa8a36SMatthew G. Knepley if (dm->Nf) { 149434aa8a36SMatthew G. Knepley PetscInt f; 149534aa8a36SMatthew G. Knepley 149634aa8a36SMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 149734aa8a36SMatthew G. Knepley const char *name; 149834aa8a36SMatthew G. Knepley 14999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName(dm->fields[f].disc, &name)); 15009566063dSJacob Faibussowitsch if (numLabels) PetscCall(PetscViewerASCIIPrintf(viewer, "Field %s:\n", name)); 15019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 15029566063dSJacob Faibussowitsch if (dm->fields[f].label) PetscCall(DMLabelView(dm->fields[f].label, viewer)); 150334aa8a36SMatthew G. Knepley if (dm->fields[f].adjacency[0]) { 15049566063dSJacob Faibussowitsch if (dm->fields[f].adjacency[1]) PetscCall(PetscViewerASCIIPrintf(viewer, "adjacency FVM++\n")); 15059566063dSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "adjacency FVM\n")); 150634aa8a36SMatthew G. Knepley } else { 15079566063dSJacob Faibussowitsch if (dm->fields[f].adjacency[1]) PetscCall(PetscViewerASCIIPrintf(viewer, "adjacency FEM\n")); 15089566063dSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "adjacency FUNKY\n")); 150934aa8a36SMatthew G. Knepley } 15109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 151134aa8a36SMatthew G. Knepley } 151234aa8a36SMatthew G. Knepley } 15139566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dm, &cdm)); 15148e7ff633SMatthew G. Knepley if (cdm) { 15159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 15169566063dSJacob Faibussowitsch PetscCall(DMPlexView_Ascii(cdm, viewer)); 15179566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 15188e7ff633SMatthew G. Knepley } 1519552f7358SJed Brown } 1520552f7358SJed Brown PetscFunctionReturn(0); 1521552f7358SJed Brown } 1522552f7358SJed Brown 1523e5c487bfSMatthew G. Knepley static PetscErrorCode DMPlexDrawCell(DM dm, PetscDraw draw, PetscInt cell, const PetscScalar coords[]) 1524e5c487bfSMatthew G. Knepley { 1525e5c487bfSMatthew G. Knepley DMPolytopeType ct; 1526e5c487bfSMatthew G. Knepley PetscMPIInt rank; 1527a12d352dSMatthew G. Knepley PetscInt cdim; 1528e5c487bfSMatthew G. Knepley 1529e5c487bfSMatthew G. Knepley PetscFunctionBegin; 15309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 15319566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cell, &ct)); 15329566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1533e5c487bfSMatthew G. Knepley switch (ct) { 1534a12d352dSMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 1535a12d352dSMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 1536a12d352dSMatthew G. Knepley switch (cdim) { 1537a12d352dSMatthew G. Knepley case 1: 1538a12d352dSMatthew G. Knepley { 1539a12d352dSMatthew G. Knepley const PetscReal y = 0.5; /* TODO Put it in the middle of the viewport */ 1540a12d352dSMatthew G. Knepley const PetscReal dy = 0.05; /* TODO Make it a fraction of the total length */ 1541a12d352dSMatthew G. Knepley 15429566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), y, PetscRealPart(coords[1]), y, PETSC_DRAW_BLACK)); 15439566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), y+dy, PetscRealPart(coords[0]), y-dy, PETSC_DRAW_BLACK)); 15449566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[1]), y+dy, PetscRealPart(coords[1]), y-dy, PETSC_DRAW_BLACK)); 1545a12d352dSMatthew G. Knepley } 1546a12d352dSMatthew G. Knepley break; 1547a12d352dSMatthew G. Knepley case 2: 1548a12d352dSMatthew G. Knepley { 1549a12d352dSMatthew G. Knepley const PetscReal dx = (PetscRealPart(coords[3]) - PetscRealPart(coords[1])); 1550a12d352dSMatthew G. Knepley const PetscReal dy = (PetscRealPart(coords[2]) - PetscRealPart(coords[0])); 1551a12d352dSMatthew G. Knepley const PetscReal l = 0.1/PetscSqrtReal(dx*dx + dy*dy); 1552a12d352dSMatthew G. Knepley 15539566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PETSC_DRAW_BLACK)); 15549566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0])+l*dx, PetscRealPart(coords[1])+l*dy, PetscRealPart(coords[0])-l*dx, PetscRealPart(coords[1])-l*dy, PETSC_DRAW_BLACK)); 15559566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[2])+l*dx, PetscRealPart(coords[3])+l*dy, PetscRealPart(coords[2])-l*dx, PetscRealPart(coords[3])-l*dy, PETSC_DRAW_BLACK)); 1556a12d352dSMatthew G. Knepley } 1557a12d352dSMatthew G. Knepley break; 155863a3b9bcSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot draw cells of dimension %" PetscInt_FMT, cdim); 1559a12d352dSMatthew G. Knepley } 1560a12d352dSMatthew G. Knepley break; 1561e5c487bfSMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 15629566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), 1563e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 1564e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 15655f80ce2aSJacob Faibussowitsch PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2)); 15669566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PETSC_DRAW_BLACK)); 15679566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), PETSC_DRAW_BLACK)); 15689566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[4]), PetscRealPart(coords[5]), PetscRealPart(coords[0]), PetscRealPart(coords[1]), PETSC_DRAW_BLACK)); 1569e5c487bfSMatthew G. Knepley break; 1570e5c487bfSMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 15719566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), 1572e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 1573e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 15745f80ce2aSJacob Faibussowitsch PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2)); 15759566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), PetscRealPart(coords[6]), PetscRealPart(coords[7]), 1576e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 1577e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 15785f80ce2aSJacob Faibussowitsch PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2)); 15799566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PETSC_DRAW_BLACK)); 15809566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), PETSC_DRAW_BLACK)); 15819566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[4]), PetscRealPart(coords[5]), PetscRealPart(coords[6]), PetscRealPart(coords[7]), PETSC_DRAW_BLACK)); 15829566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[6]), PetscRealPart(coords[7]), PetscRealPart(coords[0]), PetscRealPart(coords[1]), PETSC_DRAW_BLACK)); 1583e5c487bfSMatthew G. Knepley break; 158498921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot draw cells of type %s", DMPolytopeTypes[ct]); 1585e5c487bfSMatthew G. Knepley } 1586e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 1587e5c487bfSMatthew G. Knepley } 1588e5c487bfSMatthew G. Knepley 1589e5c487bfSMatthew G. Knepley static PetscErrorCode DMPlexDrawCellHighOrder(DM dm, PetscDraw draw, PetscInt cell, const PetscScalar coords[], PetscInt edgeDiv, PetscReal refCoords[], PetscReal edgeCoords[]) 1590e5c487bfSMatthew G. Knepley { 1591e5c487bfSMatthew G. Knepley DMPolytopeType ct; 1592e5c487bfSMatthew G. Knepley PetscReal centroid[2] = {0., 0.}; 1593e5c487bfSMatthew G. Knepley PetscMPIInt rank; 1594e5c487bfSMatthew G. Knepley PetscInt fillColor, v, e, d; 1595e5c487bfSMatthew G. Knepley 1596e5c487bfSMatthew G. Knepley PetscFunctionBegin; 15979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 15989566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cell, &ct)); 1599e5c487bfSMatthew G. Knepley fillColor = PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2; 1600e5c487bfSMatthew G. Knepley switch (ct) { 1601e5c487bfSMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 1602e5c487bfSMatthew G. Knepley { 1603e5c487bfSMatthew G. Knepley PetscReal refVertices[6] = {-1., -1., 1., -1., -1., 1.}; 1604e5c487bfSMatthew G. Knepley 1605e5c487bfSMatthew G. Knepley for (v = 0; v < 3; ++v) {centroid[0] += PetscRealPart(coords[v*2+0])/3.;centroid[1] += PetscRealPart(coords[v*2+1])/3.;} 1606e5c487bfSMatthew G. Knepley for (e = 0; e < 3; ++e) { 1607e5c487bfSMatthew G. Knepley refCoords[0] = refVertices[e*2+0]; 1608e5c487bfSMatthew G. Knepley refCoords[1] = refVertices[e*2+1]; 1609e5c487bfSMatthew G. Knepley for (d = 1; d <= edgeDiv; ++d) { 1610e5c487bfSMatthew G. Knepley refCoords[d*2+0] = refCoords[0] + (refVertices[(e+1)%3 * 2 + 0] - refCoords[0])*d/edgeDiv; 1611e5c487bfSMatthew G. Knepley refCoords[d*2+1] = refCoords[1] + (refVertices[(e+1)%3 * 2 + 1] - refCoords[1])*d/edgeDiv; 1612e5c487bfSMatthew G. Knepley } 16139566063dSJacob Faibussowitsch PetscCall(DMPlexReferenceToCoordinates(dm, cell, edgeDiv+1, refCoords, edgeCoords)); 1614e5c487bfSMatthew G. Knepley for (d = 0; d < edgeDiv; ++d) { 16159566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, centroid[0], centroid[1], edgeCoords[d*2+0], edgeCoords[d*2+1], edgeCoords[(d+1)*2+0], edgeCoords[(d+1)*2+1], fillColor, fillColor, fillColor)); 16169566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, edgeCoords[d*2+0], edgeCoords[d*2+1], edgeCoords[(d+1)*2+0], edgeCoords[(d+1)*2+1], PETSC_DRAW_BLACK)); 1617e5c487bfSMatthew G. Knepley } 1618e5c487bfSMatthew G. Knepley } 1619e5c487bfSMatthew G. Knepley } 1620e5c487bfSMatthew G. Knepley break; 162198921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot draw cells of type %s", DMPolytopeTypes[ct]); 1622e5c487bfSMatthew G. Knepley } 1623e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 1624e5c487bfSMatthew G. Knepley } 1625e5c487bfSMatthew G. Knepley 16267cd05799SMatthew G. Knepley static PetscErrorCode DMPlexView_Draw(DM dm, PetscViewer viewer) 1627e412dcbdSMatthew G. Knepley { 1628e412dcbdSMatthew G. Knepley PetscDraw draw; 1629e412dcbdSMatthew G. Knepley DM cdm; 1630e412dcbdSMatthew G. Knepley PetscSection coordSection; 1631e412dcbdSMatthew G. Knepley Vec coordinates; 1632e412dcbdSMatthew G. Knepley const PetscScalar *coords; 163329494db1SLisandro Dalcin PetscReal xyl[2],xyr[2],bound[4] = {PETSC_MAX_REAL, PETSC_MAX_REAL, PETSC_MIN_REAL, PETSC_MIN_REAL}; 1634e5c487bfSMatthew G. Knepley PetscReal *refCoords, *edgeCoords; 1635e5c487bfSMatthew G. Knepley PetscBool isnull, drawAffine = PETSC_TRUE; 1636e5c487bfSMatthew G. Knepley PetscInt dim, vStart, vEnd, cStart, cEnd, c, N, edgeDiv = 4; 1637e412dcbdSMatthew G. Knepley 1638e412dcbdSMatthew G. Knepley PetscFunctionBegin; 16399566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 164063a3b9bcSJacob Faibussowitsch PetscCheck(dim <= 2,PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Cannot draw meshes of dimension %" PetscInt_FMT, dim); 16419566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject) dm)->options, ((PetscObject) dm)->prefix, "-dm_view_draw_affine", &drawAffine, NULL)); 16429566063dSJacob Faibussowitsch if (!drawAffine) PetscCall(PetscMalloc2((edgeDiv+1)*dim, &refCoords, (edgeDiv+1)*dim, &edgeCoords)); 16439566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &cdm)); 16449566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(cdm, &coordSection)); 16459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 16469566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 16479566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 1648e412dcbdSMatthew G. Knepley 16499566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 16509566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 1651e412dcbdSMatthew G. Knepley if (isnull) PetscFunctionReturn(0); 16529566063dSJacob Faibussowitsch PetscCall(PetscDrawSetTitle(draw, "Mesh")); 1653e412dcbdSMatthew G. Knepley 16549566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(coordinates, &N)); 16559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &coords)); 1656e412dcbdSMatthew G. Knepley for (c = 0; c < N; c += dim) { 16570c81f2a8SMatthew G. Knepley bound[0] = PetscMin(bound[0], PetscRealPart(coords[c])); bound[2] = PetscMax(bound[2], PetscRealPart(coords[c])); 16580c81f2a8SMatthew G. Knepley bound[1] = PetscMin(bound[1], PetscRealPart(coords[c+1])); bound[3] = PetscMax(bound[3], PetscRealPart(coords[c+1])); 1659e412dcbdSMatthew G. Knepley } 16609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &coords)); 16611c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&bound[0],xyl,2,MPIU_REAL,MPIU_MIN,PetscObjectComm((PetscObject)dm))); 16621c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&bound[2],xyr,2,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)dm))); 16639566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, xyl[0], xyl[1], xyr[0], xyr[1])); 16649566063dSJacob Faibussowitsch PetscCall(PetscDrawClear(draw)); 1665e412dcbdSMatthew G. Knepley 1666cf3064d3SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1667cf3064d3SMatthew G. Knepley PetscScalar *coords = NULL; 1668ba2698f1SMatthew G. Knepley PetscInt numCoords; 1669cf3064d3SMatthew G. Knepley 16709566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosureAtDepth_Internal(dm, coordSection, coordinates, c, 0, &numCoords, &coords)); 1671e5c487bfSMatthew G. Knepley if (drawAffine) { 16729566063dSJacob Faibussowitsch PetscCall(DMPlexDrawCell(dm, draw, c, coords)); 1673e5c487bfSMatthew G. Knepley } else { 16749566063dSJacob Faibussowitsch PetscCall(DMPlexDrawCellHighOrder(dm, draw, c, coords, edgeDiv, refCoords, edgeCoords)); 1675cf3064d3SMatthew G. Knepley } 16769566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, coordSection, coordinates, c, &numCoords, &coords)); 1677cf3064d3SMatthew G. Knepley } 16789566063dSJacob Faibussowitsch if (!drawAffine) PetscCall(PetscFree2(refCoords, edgeCoords)); 16799566063dSJacob Faibussowitsch PetscCall(PetscDrawFlush(draw)); 16809566063dSJacob Faibussowitsch PetscCall(PetscDrawPause(draw)); 16819566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 1682e412dcbdSMatthew G. Knepley PetscFunctionReturn(0); 1683e412dcbdSMatthew G. Knepley } 1684e412dcbdSMatthew G. Knepley 16851e50132fSMatthew G. Knepley #if defined(PETSC_HAVE_EXODUSII) 16861e50132fSMatthew G. Knepley #include <exodusII.h> 16876823f3c5SBlaise Bourdin #include <petscviewerexodusii.h> 16881e50132fSMatthew G. Knepley #endif 16891e50132fSMatthew G. Knepley 1690552f7358SJed Brown PetscErrorCode DMView_Plex(DM dm, PetscViewer viewer) 1691552f7358SJed Brown { 16921e50132fSMatthew G. Knepley PetscBool iascii, ishdf5, isvtk, isdraw, flg, isglvis, isexodus; 1693002a2709SMatthew G. Knepley char name[PETSC_MAX_PATH_LEN]; 1694552f7358SJed Brown 1695552f7358SJed Brown PetscFunctionBegin; 1696552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1697552f7358SJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 16989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERASCII, &iascii)); 16999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 17009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 17019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERDRAW, &isdraw)); 17029566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERGLVIS, &isglvis)); 17039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWEREXODUSII, &isexodus)); 1704552f7358SJed Brown if (iascii) { 17058135c375SStefano Zampini PetscViewerFormat format; 17069566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 17078135c375SStefano Zampini if (format == PETSC_VIEWER_ASCII_GLVIS) { 17089566063dSJacob Faibussowitsch PetscCall(DMPlexView_GLVis(dm, viewer)); 17098135c375SStefano Zampini } else { 17109566063dSJacob Faibussowitsch PetscCall(DMPlexView_Ascii(dm, viewer)); 17118135c375SStefano Zampini } 1712c6ccd67eSMatthew G. Knepley } else if (ishdf5) { 1713c6ccd67eSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 17149566063dSJacob Faibussowitsch PetscCall(DMPlexView_HDF5_Internal(dm, viewer)); 1715c6ccd67eSMatthew G. Knepley #else 1716c6ccd67eSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1717552f7358SJed Brown #endif 1718e412dcbdSMatthew G. Knepley } else if (isvtk) { 17199566063dSJacob Faibussowitsch PetscCall(DMPlexVTKWriteAll((PetscObject) dm,viewer)); 1720e412dcbdSMatthew G. Knepley } else if (isdraw) { 17219566063dSJacob Faibussowitsch PetscCall(DMPlexView_Draw(dm, viewer)); 17228135c375SStefano Zampini } else if (isglvis) { 17239566063dSJacob Faibussowitsch PetscCall(DMPlexView_GLVis(dm, viewer)); 17241e50132fSMatthew G. Knepley #if defined(PETSC_HAVE_EXODUSII) 17251e50132fSMatthew G. Knepley } else if (isexodus) { 17266823f3c5SBlaise Bourdin /* 17276823f3c5SBlaise Bourdin exodusII requires that all sets be part of exactly one cell set. 17286823f3c5SBlaise Bourdin If the dm does not have a "Cell Sets" label defined, we create one 17296823f3c5SBlaise Bourdin with ID 1, containig all cells. 17306823f3c5SBlaise Bourdin Note that if the Cell Sets label is defined but does not cover all cells, 17316823f3c5SBlaise Bourdin we may still have a problem. This should probably be checked here or in the viewer; 17326823f3c5SBlaise Bourdin */ 17336823f3c5SBlaise Bourdin PetscInt numCS; 17349566063dSJacob Faibussowitsch PetscCall(DMGetLabelSize(dm,"Cell Sets",&numCS)); 17356823f3c5SBlaise Bourdin if (!numCS) { 17361e50132fSMatthew G. Knepley PetscInt cStart, cEnd, c; 17379566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, "Cell Sets")); 17389566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 17399566063dSJacob Faibussowitsch for (c = cStart; c < cEnd; ++c) PetscCall(DMSetLabelValue(dm, "Cell Sets", c, 1)); 17406823f3c5SBlaise Bourdin } 17419566063dSJacob Faibussowitsch PetscCall(DMView_PlexExodusII(dm, viewer)); 17421e50132fSMatthew G. Knepley #endif 174362201deeSVaclav Hapla } else { 174498921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Viewer type %s not yet supported for DMPlex writing", ((PetscObject)viewer)->type_name); 1745fcf6c8fdSToby Isaac } 1746cb3ba0daSMatthew G. Knepley /* Optionally view the partition */ 17479566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options, ((PetscObject) dm)->prefix, "-dm_partition_view", &flg)); 1748cb3ba0daSMatthew G. Knepley if (flg) { 1749cb3ba0daSMatthew G. Knepley Vec ranks; 17509566063dSJacob Faibussowitsch PetscCall(DMPlexCreateRankField(dm, &ranks)); 17519566063dSJacob Faibussowitsch PetscCall(VecView(ranks, viewer)); 17529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ranks)); 1753cb3ba0daSMatthew G. Knepley } 1754002a2709SMatthew G. Knepley /* Optionally view a label */ 17559566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(((PetscObject) dm)->options, ((PetscObject) dm)->prefix, "-dm_label_view", name, sizeof(name), &flg)); 1756002a2709SMatthew G. Knepley if (flg) { 1757002a2709SMatthew G. Knepley DMLabel label; 1758002a2709SMatthew G. Knepley Vec val; 1759002a2709SMatthew G. Knepley 17609566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 176128b400f6SJacob Faibussowitsch PetscCheck(label,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Label %s provided to -dm_label_view does not exist in this DM", name); 17629566063dSJacob Faibussowitsch PetscCall(DMPlexCreateLabelField(dm, label, &val)); 17639566063dSJacob Faibussowitsch PetscCall(VecView(val, viewer)); 17649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&val)); 1765002a2709SMatthew G. Knepley } 1766552f7358SJed Brown PetscFunctionReturn(0); 1767552f7358SJed Brown } 1768552f7358SJed Brown 17697f96f51bSksagiyam /*@ 17707f96f51bSksagiyam DMPlexTopologyView - Saves a DMPlex topology into a file 17717f96f51bSksagiyam 17727f96f51bSksagiyam Collective on DM 17737f96f51bSksagiyam 17747f96f51bSksagiyam Input Parameters: 17757f96f51bSksagiyam + dm - The DM whose topology is to be saved 17767f96f51bSksagiyam - viewer - The PetscViewer for saving 17777f96f51bSksagiyam 17787f96f51bSksagiyam Level: advanced 17797f96f51bSksagiyam 1780db781477SPatrick Sanan .seealso: `DMView()`, `DMPlexCoordinatesView()`, `DMPlexLabelsView()`, `DMPlexTopologyLoad()` 17817f96f51bSksagiyam @*/ 17827f96f51bSksagiyam PetscErrorCode DMPlexTopologyView(DM dm, PetscViewer viewer) 17837f96f51bSksagiyam { 17847f96f51bSksagiyam PetscBool ishdf5; 17857f96f51bSksagiyam 17867f96f51bSksagiyam PetscFunctionBegin; 17877f96f51bSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17887f96f51bSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 17899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 17909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_TopologyView,viewer,0,0,0)); 17917f96f51bSksagiyam if (ishdf5) { 17927f96f51bSksagiyam #if defined(PETSC_HAVE_HDF5) 17937f96f51bSksagiyam PetscViewerFormat format; 17949566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 17957f96f51bSksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 17967f96f51bSksagiyam IS globalPointNumbering; 17977f96f51bSksagiyam 17989566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &globalPointNumbering)); 17999566063dSJacob Faibussowitsch PetscCall(DMPlexTopologyView_HDF5_Internal(dm, globalPointNumbering, viewer)); 18009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&globalPointNumbering)); 180198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 output.", PetscViewerFormats[format]); 18027f96f51bSksagiyam #else 18037f96f51bSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 18047f96f51bSksagiyam #endif 18057f96f51bSksagiyam } 18069566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_TopologyView,viewer,0,0,0)); 18077f96f51bSksagiyam PetscFunctionReturn(0); 18087f96f51bSksagiyam } 18097f96f51bSksagiyam 181077b8e257Sksagiyam /*@ 181177b8e257Sksagiyam DMPlexCoordinatesView - Saves DMPlex coordinates into a file 181277b8e257Sksagiyam 181377b8e257Sksagiyam Collective on DM 181477b8e257Sksagiyam 181577b8e257Sksagiyam Input Parameters: 181677b8e257Sksagiyam + dm - The DM whose coordinates are to be saved 181777b8e257Sksagiyam - viewer - The PetscViewer for saving 181877b8e257Sksagiyam 181977b8e257Sksagiyam Level: advanced 182077b8e257Sksagiyam 1821db781477SPatrick Sanan .seealso: `DMView()`, `DMPlexTopologyView()`, `DMPlexLabelsView()`, `DMPlexCoordinatesLoad()` 182277b8e257Sksagiyam @*/ 182377b8e257Sksagiyam PetscErrorCode DMPlexCoordinatesView(DM dm, PetscViewer viewer) 182477b8e257Sksagiyam { 182577b8e257Sksagiyam PetscBool ishdf5; 182677b8e257Sksagiyam 182777b8e257Sksagiyam PetscFunctionBegin; 182877b8e257Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 182977b8e257Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 18309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 18319566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CoordinatesView,viewer,0,0,0)); 183277b8e257Sksagiyam if (ishdf5) { 183377b8e257Sksagiyam #if defined(PETSC_HAVE_HDF5) 183477b8e257Sksagiyam PetscViewerFormat format; 18359566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 183677b8e257Sksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 18379566063dSJacob Faibussowitsch PetscCall(DMPlexCoordinatesView_HDF5_Internal(dm, viewer)); 183898921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 183977b8e257Sksagiyam #else 184077b8e257Sksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 184177b8e257Sksagiyam #endif 184277b8e257Sksagiyam } 18439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CoordinatesView,viewer,0,0,0)); 184477b8e257Sksagiyam PetscFunctionReturn(0); 184577b8e257Sksagiyam } 184677b8e257Sksagiyam 1847bd6565f1Sksagiyam /*@ 1848bd6565f1Sksagiyam DMPlexLabelsView - Saves DMPlex labels into a file 1849bd6565f1Sksagiyam 1850bd6565f1Sksagiyam Collective on DM 1851bd6565f1Sksagiyam 1852bd6565f1Sksagiyam Input Parameters: 1853bd6565f1Sksagiyam + dm - The DM whose labels are to be saved 1854bd6565f1Sksagiyam - viewer - The PetscViewer for saving 1855bd6565f1Sksagiyam 1856bd6565f1Sksagiyam Level: advanced 1857bd6565f1Sksagiyam 1858db781477SPatrick Sanan .seealso: `DMView()`, `DMPlexTopologyView()`, `DMPlexCoordinatesView()`, `DMPlexLabelsLoad()` 1859bd6565f1Sksagiyam @*/ 1860bd6565f1Sksagiyam PetscErrorCode DMPlexLabelsView(DM dm, PetscViewer viewer) 1861bd6565f1Sksagiyam { 1862bd6565f1Sksagiyam PetscBool ishdf5; 1863bd6565f1Sksagiyam 1864bd6565f1Sksagiyam PetscFunctionBegin; 1865bd6565f1Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1866bd6565f1Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 18679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 18689566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_LabelsView,viewer,0,0,0)); 1869bd6565f1Sksagiyam if (ishdf5) { 1870bd6565f1Sksagiyam #if defined(PETSC_HAVE_HDF5) 1871bd6565f1Sksagiyam IS globalPointNumbering; 1872bd6565f1Sksagiyam PetscViewerFormat format; 1873bd6565f1Sksagiyam 18749566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1875bd6565f1Sksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 18769566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &globalPointNumbering)); 18779566063dSJacob Faibussowitsch PetscCall(DMPlexLabelsView_HDF5_Internal(dm, globalPointNumbering, viewer)); 18789566063dSJacob Faibussowitsch PetscCall(ISDestroy(&globalPointNumbering)); 187998921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 1880bd6565f1Sksagiyam #else 1881bd6565f1Sksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1882bd6565f1Sksagiyam #endif 1883bd6565f1Sksagiyam } 18849566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_LabelsView,viewer,0,0,0)); 1885bd6565f1Sksagiyam PetscFunctionReturn(0); 1886bd6565f1Sksagiyam } 1887bd6565f1Sksagiyam 1888021affd3Sksagiyam /*@ 1889021affd3Sksagiyam DMPlexSectionView - Saves a section associated with a DMPlex 1890021affd3Sksagiyam 1891021affd3Sksagiyam Collective on DM 1892021affd3Sksagiyam 1893021affd3Sksagiyam Input Parameters: 1894021affd3Sksagiyam + dm - The DM that contains the topology on which the section to be saved is defined 1895021affd3Sksagiyam . viewer - The PetscViewer for saving 1896021affd3Sksagiyam - sectiondm - The DM that contains the section to be saved 1897021affd3Sksagiyam 1898021affd3Sksagiyam Level: advanced 1899021affd3Sksagiyam 1900021affd3Sksagiyam Notes: 1901021affd3Sksagiyam This function is a wrapper around PetscSectionView(); in addition to the raw section, it saves information that associates the section points to the topology (dm) points. When the topology (dm) and the section are later loaded with DMPlexTopologyLoad() and DMPlexSectionLoad(), respectively, this information is used to match section points with topology points. 1902021affd3Sksagiyam 1903021affd3Sksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 1904021affd3Sksagiyam 1905db781477SPatrick Sanan .seealso: `DMView()`, `DMPlexTopologyView()`, `DMPlexCoordinatesView()`, `DMPlexLabelsView()`, `DMPlexGlobalVectorView()`, `DMPlexLocalVectorView()`, `PetscSectionView()`, `DMPlexSectionLoad()` 1906021affd3Sksagiyam @*/ 1907021affd3Sksagiyam PetscErrorCode DMPlexSectionView(DM dm, PetscViewer viewer, DM sectiondm) 1908021affd3Sksagiyam { 1909021affd3Sksagiyam PetscBool ishdf5; 1910021affd3Sksagiyam 1911021affd3Sksagiyam PetscFunctionBegin; 1912021affd3Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1913021affd3Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1914021affd3Sksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 19159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5)); 19169566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_SectionView,viewer,0,0,0)); 1917021affd3Sksagiyam if (ishdf5) { 1918021affd3Sksagiyam #if defined(PETSC_HAVE_HDF5) 19199566063dSJacob Faibussowitsch PetscCall(DMPlexSectionView_HDF5_Internal(dm, viewer, sectiondm)); 1920021affd3Sksagiyam #else 1921021affd3Sksagiyam SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1922021affd3Sksagiyam #endif 1923021affd3Sksagiyam } 19249566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_SectionView,viewer,0,0,0)); 1925021affd3Sksagiyam PetscFunctionReturn(0); 1926021affd3Sksagiyam } 1927021affd3Sksagiyam 19283e97647fSksagiyam /*@ 19293e97647fSksagiyam DMPlexGlobalVectorView - Saves a global vector 19303e97647fSksagiyam 19313e97647fSksagiyam Collective on DM 19323e97647fSksagiyam 19333e97647fSksagiyam Input Parameters: 19343e97647fSksagiyam + dm - The DM that represents the topology 19353e97647fSksagiyam . viewer - The PetscViewer to save data with 19363e97647fSksagiyam . sectiondm - The DM that contains the global section on which vec is defined 19373e97647fSksagiyam - vec - The global vector to be saved 19383e97647fSksagiyam 19393e97647fSksagiyam Level: advanced 19403e97647fSksagiyam 19413e97647fSksagiyam Notes: 19423e97647fSksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 19433e97647fSksagiyam 19443e97647fSksagiyam Typical calling sequence 19453e97647fSksagiyam $ DMCreate(PETSC_COMM_WORLD, &dm); 19463e97647fSksagiyam $ DMSetType(dm, DMPLEX); 19473e97647fSksagiyam $ PetscObjectSetName((PetscObject)dm, "topologydm_name"); 19483e97647fSksagiyam $ DMClone(dm, §iondm); 19493e97647fSksagiyam $ PetscObjectSetName((PetscObject)sectiondm, "sectiondm_name"); 19503e97647fSksagiyam $ PetscSectionCreate(PETSC_COMM_WORLD, §ion); 19513e97647fSksagiyam $ DMPlexGetChart(sectiondm, &pStart, &pEnd); 19523e97647fSksagiyam $ PetscSectionSetChart(section, pStart, pEnd); 19533e97647fSksagiyam $ PetscSectionSetUp(section); 19543e97647fSksagiyam $ DMSetLocalSection(sectiondm, section); 19553e97647fSksagiyam $ PetscSectionDestroy(§ion); 19563e97647fSksagiyam $ DMGetGlobalVector(sectiondm, &vec); 19573e97647fSksagiyam $ PetscObjectSetName((PetscObject)vec, "vec_name"); 19583e97647fSksagiyam $ DMPlexTopologyView(dm, viewer); 19593e97647fSksagiyam $ DMPlexSectionView(dm, viewer, sectiondm); 19603e97647fSksagiyam $ DMPlexGlobalVectorView(dm, viewer, sectiondm, vec); 19613e97647fSksagiyam $ DMRestoreGlobalVector(sectiondm, &vec); 19623e97647fSksagiyam $ DMDestroy(§iondm); 19633e97647fSksagiyam $ DMDestroy(&dm); 19643e97647fSksagiyam 1965db781477SPatrick Sanan .seealso: `DMPlexTopologyView()`, `DMPlexSectionView()`, `DMPlexLocalVectorView()`, `DMPlexGlobalVectorLoad()`, `DMPlexLocalVectorLoad()` 19663e97647fSksagiyam @*/ 19673e97647fSksagiyam PetscErrorCode DMPlexGlobalVectorView(DM dm, PetscViewer viewer, DM sectiondm, Vec vec) 19683e97647fSksagiyam { 19693e97647fSksagiyam PetscBool ishdf5; 19703e97647fSksagiyam 19713e97647fSksagiyam PetscFunctionBegin; 19723e97647fSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 19733e97647fSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 19743e97647fSksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 19753e97647fSksagiyam PetscValidHeaderSpecific(vec, VEC_CLASSID, 4); 19763e97647fSksagiyam /* Check consistency */ 19773e97647fSksagiyam { 19783e97647fSksagiyam PetscSection section; 19793e97647fSksagiyam PetscBool includesConstraints; 19803e97647fSksagiyam PetscInt m, m1; 19813e97647fSksagiyam 19829566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &m1)); 19839566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(sectiondm, §ion)); 19849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetIncludesConstraints(section, &includesConstraints)); 19859566063dSJacob Faibussowitsch if (includesConstraints) PetscCall(PetscSectionGetStorageSize(section, &m)); 19869566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetConstrainedStorageSize(section, &m)); 198763a3b9bcSJacob Faibussowitsch PetscCheck(m1 == m,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Global vector size (%" PetscInt_FMT ") != global section storage size (%" PetscInt_FMT ")", m1, m); 19883e97647fSksagiyam } 19899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 19909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_GlobalVectorView,viewer,0,0,0)); 19913e97647fSksagiyam if (ishdf5) { 19923e97647fSksagiyam #if defined(PETSC_HAVE_HDF5) 19939566063dSJacob Faibussowitsch PetscCall(DMPlexGlobalVectorView_HDF5_Internal(dm, viewer, sectiondm, vec)); 19943e97647fSksagiyam #else 19953e97647fSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 19963e97647fSksagiyam #endif 19973e97647fSksagiyam } 19989566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_GlobalVectorView,viewer,0,0,0)); 19993e97647fSksagiyam PetscFunctionReturn(0); 20003e97647fSksagiyam } 20013e97647fSksagiyam 20023e97647fSksagiyam /*@ 20033e97647fSksagiyam DMPlexLocalVectorView - Saves a local vector 20043e97647fSksagiyam 20053e97647fSksagiyam Collective on DM 20063e97647fSksagiyam 20073e97647fSksagiyam Input Parameters: 20083e97647fSksagiyam + dm - The DM that represents the topology 20093e97647fSksagiyam . viewer - The PetscViewer to save data with 20103e97647fSksagiyam . sectiondm - The DM that contains the local section on which vec is defined; may be the same as dm 20113e97647fSksagiyam - vec - The local vector to be saved 20123e97647fSksagiyam 20133e97647fSksagiyam Level: advanced 20143e97647fSksagiyam 20153e97647fSksagiyam Notes: 20163e97647fSksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 20173e97647fSksagiyam 20183e97647fSksagiyam Typical calling sequence 20193e97647fSksagiyam $ DMCreate(PETSC_COMM_WORLD, &dm); 20203e97647fSksagiyam $ DMSetType(dm, DMPLEX); 20213e97647fSksagiyam $ PetscObjectSetName((PetscObject)dm, "topologydm_name"); 20223e97647fSksagiyam $ DMClone(dm, §iondm); 20233e97647fSksagiyam $ PetscObjectSetName((PetscObject)sectiondm, "sectiondm_name"); 20243e97647fSksagiyam $ PetscSectionCreate(PETSC_COMM_WORLD, §ion); 20253e97647fSksagiyam $ DMPlexGetChart(sectiondm, &pStart, &pEnd); 20263e97647fSksagiyam $ PetscSectionSetChart(section, pStart, pEnd); 20273e97647fSksagiyam $ PetscSectionSetUp(section); 20283e97647fSksagiyam $ DMSetLocalSection(sectiondm, section); 20293e97647fSksagiyam $ DMGetLocalVector(sectiondm, &vec); 20303e97647fSksagiyam $ PetscObjectSetName((PetscObject)vec, "vec_name"); 20313e97647fSksagiyam $ DMPlexTopologyView(dm, viewer); 20323e97647fSksagiyam $ DMPlexSectionView(dm, viewer, sectiondm); 20333e97647fSksagiyam $ DMPlexLocalVectorView(dm, viewer, sectiondm, vec); 20343e97647fSksagiyam $ DMRestoreLocalVector(sectiondm, &vec); 20353e97647fSksagiyam $ DMDestroy(§iondm); 20363e97647fSksagiyam $ DMDestroy(&dm); 20373e97647fSksagiyam 2038db781477SPatrick Sanan .seealso: `DMPlexTopologyView()`, `DMPlexSectionView()`, `DMPlexGlobalVectorView()`, `DMPlexGlobalVectorLoad()`, `DMPlexLocalVectorLoad()` 20393e97647fSksagiyam @*/ 20403e97647fSksagiyam PetscErrorCode DMPlexLocalVectorView(DM dm, PetscViewer viewer, DM sectiondm, Vec vec) 20413e97647fSksagiyam { 20423e97647fSksagiyam PetscBool ishdf5; 20433e97647fSksagiyam 20443e97647fSksagiyam PetscFunctionBegin; 20453e97647fSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20463e97647fSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 20473e97647fSksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 20483e97647fSksagiyam PetscValidHeaderSpecific(vec, VEC_CLASSID, 4); 20493e97647fSksagiyam /* Check consistency */ 20503e97647fSksagiyam { 20513e97647fSksagiyam PetscSection section; 20523e97647fSksagiyam PetscBool includesConstraints; 20533e97647fSksagiyam PetscInt m, m1; 20543e97647fSksagiyam 20559566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &m1)); 20569566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(sectiondm, §ion)); 20579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetIncludesConstraints(section, &includesConstraints)); 20589566063dSJacob Faibussowitsch if (includesConstraints) PetscCall(PetscSectionGetStorageSize(section, &m)); 20599566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetConstrainedStorageSize(section, &m)); 206063a3b9bcSJacob Faibussowitsch PetscCheck(m1 == m,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Local vector size (%" PetscInt_FMT ") != local section storage size (%" PetscInt_FMT ")", m1, m); 20613e97647fSksagiyam } 20629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 20639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_LocalVectorView,viewer,0,0,0)); 20643e97647fSksagiyam if (ishdf5) { 20653e97647fSksagiyam #if defined(PETSC_HAVE_HDF5) 20669566063dSJacob Faibussowitsch PetscCall(DMPlexLocalVectorView_HDF5_Internal(dm, viewer, sectiondm, vec)); 20673e97647fSksagiyam #else 20683e97647fSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 20693e97647fSksagiyam #endif 20703e97647fSksagiyam } 20719566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_LocalVectorView,viewer,0,0,0)); 20723e97647fSksagiyam PetscFunctionReturn(0); 20733e97647fSksagiyam } 20743e97647fSksagiyam 20752c40f234SMatthew G. Knepley PetscErrorCode DMLoad_Plex(DM dm, PetscViewer viewer) 20762c40f234SMatthew G. Knepley { 2077d4f5a9a0SVaclav Hapla PetscBool ishdf5; 20782c40f234SMatthew G. Knepley 20792c40f234SMatthew G. Knepley PetscFunctionBegin; 20802c40f234SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20812c40f234SMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 20829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 2083d4f5a9a0SVaclav Hapla if (ishdf5) { 20842c40f234SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 20859c48423bSVaclav Hapla PetscViewerFormat format; 20869566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 20879c48423bSVaclav Hapla if (format == PETSC_VIEWER_HDF5_XDMF || format == PETSC_VIEWER_HDF5_VIZ) { 20889566063dSJacob Faibussowitsch PetscCall(DMPlexLoad_HDF5_Xdmf_Internal(dm, viewer)); 2089509517efSVaclav Hapla } else if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 20909566063dSJacob Faibussowitsch PetscCall(DMPlexLoad_HDF5_Internal(dm, viewer)); 209198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 2092b458e8f1SJose E. Roman PetscFunctionReturn(0); 20932c40f234SMatthew G. Knepley #else 20942c40f234SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 2095552f7358SJed Brown #endif 209698921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Viewer type %s not yet supported for DMPlex loading", ((PetscObject)viewer)->type_name); 2097552f7358SJed Brown } 2098552f7358SJed Brown 2099ea8e1828Sksagiyam /*@ 2100ea8e1828Sksagiyam DMPlexTopologyLoad - Loads a topology into a DMPlex 2101ea8e1828Sksagiyam 2102ea8e1828Sksagiyam Collective on DM 2103ea8e1828Sksagiyam 2104ea8e1828Sksagiyam Input Parameters: 2105ea8e1828Sksagiyam + dm - The DM into which the topology is loaded 2106ea8e1828Sksagiyam - viewer - The PetscViewer for the saved topology 2107ea8e1828Sksagiyam 2108dec9e869Sksagiyam Output Parameters: 2109f84dd6b4Sksagiyam . globalToLocalPointSF - The PetscSF that pushes points in [0, N) to the associated points in the loaded plex, where N is the global number of points; NULL if unneeded 2110dec9e869Sksagiyam 2111ea8e1828Sksagiyam Level: advanced 2112ea8e1828Sksagiyam 2113db781477SPatrick Sanan .seealso: `DMLoad()`, `DMPlexCoordinatesLoad()`, `DMPlexLabelsLoad()`, `DMView()`, `PetscViewerHDF5Open()`, `PetscViewerPushFormat()` 2114ea8e1828Sksagiyam @*/ 2115f84dd6b4Sksagiyam PetscErrorCode DMPlexTopologyLoad(DM dm, PetscViewer viewer, PetscSF *globalToLocalPointSF) 2116ea8e1828Sksagiyam { 2117ea8e1828Sksagiyam PetscBool ishdf5; 2118ea8e1828Sksagiyam 2119ea8e1828Sksagiyam PetscFunctionBegin; 2120ea8e1828Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2121ea8e1828Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 2122f84dd6b4Sksagiyam if (globalToLocalPointSF) PetscValidPointer(globalToLocalPointSF, 3); 21239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 21249566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_TopologyLoad,viewer,0,0,0)); 2125ea8e1828Sksagiyam if (ishdf5) { 2126ea8e1828Sksagiyam #if defined(PETSC_HAVE_HDF5) 2127ea8e1828Sksagiyam PetscViewerFormat format; 21289566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 2129ea8e1828Sksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 21309566063dSJacob Faibussowitsch PetscCall(DMPlexTopologyLoad_HDF5_Internal(dm, viewer, globalToLocalPointSF)); 213198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 2132ea8e1828Sksagiyam #else 2133ea8e1828Sksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 2134ea8e1828Sksagiyam #endif 2135ea8e1828Sksagiyam } 21369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_TopologyLoad,viewer,0,0,0)); 2137ea8e1828Sksagiyam PetscFunctionReturn(0); 2138ea8e1828Sksagiyam } 2139ea8e1828Sksagiyam 21403e701f1cSksagiyam /*@ 21413e701f1cSksagiyam DMPlexCoordinatesLoad - Loads coordinates into a DMPlex 21423e701f1cSksagiyam 21433e701f1cSksagiyam Collective on DM 21443e701f1cSksagiyam 21453e701f1cSksagiyam Input Parameters: 21463e701f1cSksagiyam + dm - The DM into which the coordinates are loaded 2147c9ad657eSksagiyam . viewer - The PetscViewer for the saved coordinates 2148c9ad657eSksagiyam - globalToLocalPointSF - The SF returned by DMPlexTopologyLoad() when loading dm from viewer 21493e701f1cSksagiyam 21503e701f1cSksagiyam Level: advanced 21513e701f1cSksagiyam 2152db781477SPatrick Sanan .seealso: `DMLoad()`, `DMPlexTopologyLoad()`, `DMPlexLabelsLoad()`, `DMView()`, `PetscViewerHDF5Open()`, `PetscViewerPushFormat()` 21533e701f1cSksagiyam @*/ 2154c9ad657eSksagiyam PetscErrorCode DMPlexCoordinatesLoad(DM dm, PetscViewer viewer, PetscSF globalToLocalPointSF) 21553e701f1cSksagiyam { 21563e701f1cSksagiyam PetscBool ishdf5; 21573e701f1cSksagiyam 21583e701f1cSksagiyam PetscFunctionBegin; 21593e701f1cSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21603e701f1cSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 2161c9ad657eSksagiyam PetscValidHeaderSpecific(globalToLocalPointSF, PETSCSF_CLASSID, 3); 21629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 21639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CoordinatesLoad,viewer,0,0,0)); 21643e701f1cSksagiyam if (ishdf5) { 21653e701f1cSksagiyam #if defined(PETSC_HAVE_HDF5) 21663e701f1cSksagiyam PetscViewerFormat format; 21679566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 21683e701f1cSksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 21699566063dSJacob Faibussowitsch PetscCall(DMPlexCoordinatesLoad_HDF5_Internal(dm, viewer, globalToLocalPointSF)); 217098921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 21713e701f1cSksagiyam #else 21723e701f1cSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 21733e701f1cSksagiyam #endif 21743e701f1cSksagiyam } 21759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CoordinatesLoad,viewer,0,0,0)); 21763e701f1cSksagiyam PetscFunctionReturn(0); 21773e701f1cSksagiyam } 21783e701f1cSksagiyam 2179b08ad5deSksagiyam /*@ 2180b08ad5deSksagiyam DMPlexLabelsLoad - Loads labels into a DMPlex 2181b08ad5deSksagiyam 2182b08ad5deSksagiyam Collective on DM 2183b08ad5deSksagiyam 2184b08ad5deSksagiyam Input Parameters: 2185b08ad5deSksagiyam + dm - The DM into which the labels are loaded 2186e6368b79SVaclav Hapla . viewer - The PetscViewer for the saved labels 2187e6368b79SVaclav Hapla - globalToLocalPointSF - The SF returned by DMPlexTopologyLoad() when loading dm from viewer 2188b08ad5deSksagiyam 2189b08ad5deSksagiyam Level: advanced 2190b08ad5deSksagiyam 2191e6368b79SVaclav Hapla Notes: 2192e6368b79SVaclav Hapla The PetscSF argument must not be NULL if the DM is distributed, otherwise an error occurs. 2193e6368b79SVaclav Hapla 2194db781477SPatrick Sanan .seealso: `DMLoad()`, `DMPlexTopologyLoad()`, `DMPlexCoordinatesLoad()`, `DMView()`, `PetscViewerHDF5Open()`, `PetscViewerPushFormat()` 2195b08ad5deSksagiyam @*/ 2196e6368b79SVaclav Hapla PetscErrorCode DMPlexLabelsLoad(DM dm, PetscViewer viewer, PetscSF globalToLocalPointSF) 2197b08ad5deSksagiyam { 2198b08ad5deSksagiyam PetscBool ishdf5; 2199b08ad5deSksagiyam 2200b08ad5deSksagiyam PetscFunctionBegin; 2201b08ad5deSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2202b08ad5deSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 2203e6368b79SVaclav Hapla if (globalToLocalPointSF) PetscValidHeaderSpecific(globalToLocalPointSF, PETSCSF_CLASSID, 3); 22049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 22059566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_LabelsLoad,viewer,0,0,0)); 2206b08ad5deSksagiyam if (ishdf5) { 2207b08ad5deSksagiyam #if defined(PETSC_HAVE_HDF5) 2208b08ad5deSksagiyam PetscViewerFormat format; 2209b08ad5deSksagiyam 22109566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 2211b08ad5deSksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 22129566063dSJacob Faibussowitsch PetscCall(DMPlexLabelsLoad_HDF5_Internal(dm, viewer, globalToLocalPointSF)); 221398921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 2214b08ad5deSksagiyam #else 2215b08ad5deSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 2216b08ad5deSksagiyam #endif 2217b08ad5deSksagiyam } 22189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_LabelsLoad,viewer,0,0,0)); 2219b08ad5deSksagiyam PetscFunctionReturn(0); 2220b08ad5deSksagiyam } 2221b08ad5deSksagiyam 2222f84dd6b4Sksagiyam /*@ 2223f84dd6b4Sksagiyam DMPlexSectionLoad - Loads section into a DMPlex 2224f84dd6b4Sksagiyam 2225f84dd6b4Sksagiyam Collective on DM 2226f84dd6b4Sksagiyam 2227f84dd6b4Sksagiyam Input Parameters: 2228f84dd6b4Sksagiyam + dm - The DM that represents the topology 2229f84dd6b4Sksagiyam . viewer - The PetscViewer that represents the on-disk section (sectionA) 2230f84dd6b4Sksagiyam . sectiondm - The DM into which the on-disk section (sectionA) is migrated 2231f84dd6b4Sksagiyam - globalToLocalPointSF - The SF returned by DMPlexTopologyLoad() when loading dm from viewer 2232f84dd6b4Sksagiyam 2233f84dd6b4Sksagiyam Output Parameters 2234f84dd6b4Sksagiyam + globalDofSF - The SF that migrates any on-disk Vec data associated with sectionA into a global Vec associated with the sectiondm's global section (NULL if not needed) 2235f84dd6b4Sksagiyam - localDofSF - The SF that migrates any on-disk Vec data associated with sectionA into a local Vec associated with the sectiondm's local section (NULL if not needed) 2236f84dd6b4Sksagiyam 2237f84dd6b4Sksagiyam Level: advanced 2238f84dd6b4Sksagiyam 2239f84dd6b4Sksagiyam Notes: 2240f84dd6b4Sksagiyam This function is a wrapper around PetscSectionLoad(); it loads, in addition to the raw section, a list of global point numbers that associates each on-disk section point with a global point number in [0, NX), where NX is the number of topology points in dm. Noting that globalToLocalPointSF associates each topology point in dm with a global number in [0, NX), one can readily establish an association of the on-disk section points with the topology points. 2241f84dd6b4Sksagiyam 2242f84dd6b4Sksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 2243f84dd6b4Sksagiyam 2244f84dd6b4Sksagiyam The output parameter, globalDofSF (localDofSF), can later be used with DMPlexGlobalVectorLoad() (DMPlexLocalVectorLoad()) to load on-disk vectors into global (local) vectors associated with sectiondm's global (local) section. 2245f84dd6b4Sksagiyam 2246f84dd6b4Sksagiyam Example using 2 processes: 2247f84dd6b4Sksagiyam $ NX (number of points on dm): 4 2248f84dd6b4Sksagiyam $ sectionA : the on-disk section 2249f84dd6b4Sksagiyam $ vecA : a vector associated with sectionA 2250f84dd6b4Sksagiyam $ sectionB : sectiondm's local section constructed in this function 2251f84dd6b4Sksagiyam $ vecB (local) : a vector associated with sectiondm's local section 2252f84dd6b4Sksagiyam $ vecB (global) : a vector associated with sectiondm's global section 2253f84dd6b4Sksagiyam $ 2254f84dd6b4Sksagiyam $ rank 0 rank 1 2255f84dd6b4Sksagiyam $ vecA (global) : [.0 .4 .1 | .2 .3] <- to be loaded in DMPlexGlobalVectorLoad() or DMPlexLocalVectorLoad() 2256f84dd6b4Sksagiyam $ sectionA->atlasOff : 0 2 | 1 <- loaded in PetscSectionLoad() 2257f84dd6b4Sksagiyam $ sectionA->atlasDof : 1 3 | 1 <- loaded in PetscSectionLoad() 2258f84dd6b4Sksagiyam $ sectionA's global point numbers: 0 2 | 3 <- loaded in DMPlexSectionLoad() 2259f84dd6b4Sksagiyam $ [0, NX) : 0 1 | 2 3 <- conceptual partition used in globalToLocalPointSF 2260f84dd6b4Sksagiyam $ sectionB's global point numbers: 0 1 3 | 3 2 <- associated with [0, NX) by globalToLocalPointSF 2261f84dd6b4Sksagiyam $ sectionB->atlasDof : 1 0 1 | 1 3 2262f84dd6b4Sksagiyam $ sectionB->atlasOff (no perm) : 0 1 1 | 0 1 2263f84dd6b4Sksagiyam $ vecB (local) : [.0 .4] | [.4 .1 .2 .3] <- to be constructed by calling DMPlexLocalVectorLoad() with localDofSF 2264f84dd6b4Sksagiyam $ vecB (global) : [.0 .4 | .1 .2 .3] <- to be constructed by calling DMPlexGlobalVectorLoad() with globalDofSF 2265f84dd6b4Sksagiyam $ 2266f84dd6b4Sksagiyam $ where "|" represents a partition of loaded data, and global point 3 is assumed to be owned by rank 0. 2267f84dd6b4Sksagiyam 2268db781477SPatrick Sanan .seealso: `DMLoad()`, `DMPlexTopologyLoad()`, `DMPlexCoordinatesLoad()`, `DMPlexLabelsLoad()`, `DMPlexGlobalVectorLoad()`, `DMPlexLocalVectorLoad()`, `PetscSectionLoad()`, `DMPlexSectionView()` 2269f84dd6b4Sksagiyam @*/ 2270f84dd6b4Sksagiyam PetscErrorCode DMPlexSectionLoad(DM dm, PetscViewer viewer, DM sectiondm, PetscSF globalToLocalPointSF, PetscSF *globalDofSF, PetscSF *localDofSF) 2271f84dd6b4Sksagiyam { 2272f84dd6b4Sksagiyam PetscBool ishdf5; 2273f84dd6b4Sksagiyam 2274f84dd6b4Sksagiyam PetscFunctionBegin; 2275f84dd6b4Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2276f84dd6b4Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 2277f84dd6b4Sksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 2278f84dd6b4Sksagiyam PetscValidHeaderSpecific(globalToLocalPointSF, PETSCSF_CLASSID, 4); 2279f84dd6b4Sksagiyam if (globalDofSF) PetscValidPointer(globalDofSF, 5); 2280f84dd6b4Sksagiyam if (localDofSF) PetscValidPointer(localDofSF, 6); 22819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5)); 22829566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_SectionLoad,viewer,0,0,0)); 2283f84dd6b4Sksagiyam if (ishdf5) { 2284f84dd6b4Sksagiyam #if defined(PETSC_HAVE_HDF5) 22859566063dSJacob Faibussowitsch PetscCall(DMPlexSectionLoad_HDF5_Internal(dm, viewer, sectiondm, globalToLocalPointSF, globalDofSF, localDofSF)); 2286f84dd6b4Sksagiyam #else 2287f84dd6b4Sksagiyam SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 2288f84dd6b4Sksagiyam #endif 2289f84dd6b4Sksagiyam } 22909566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_SectionLoad,viewer,0,0,0)); 2291f84dd6b4Sksagiyam PetscFunctionReturn(0); 2292f84dd6b4Sksagiyam } 2293f84dd6b4Sksagiyam 22948be3dfe1Sksagiyam /*@ 22958be3dfe1Sksagiyam DMPlexGlobalVectorLoad - Loads on-disk vector data into a global vector 22968be3dfe1Sksagiyam 22978be3dfe1Sksagiyam Collective on DM 22988be3dfe1Sksagiyam 22998be3dfe1Sksagiyam Input Parameters: 23008be3dfe1Sksagiyam + dm - The DM that represents the topology 23018be3dfe1Sksagiyam . viewer - The PetscViewer that represents the on-disk vector data 23028be3dfe1Sksagiyam . sectiondm - The DM that contains the global section on which vec is defined 23038be3dfe1Sksagiyam . sf - The SF that migrates the on-disk vector data into vec 23048be3dfe1Sksagiyam - vec - The global vector to set values of 23058be3dfe1Sksagiyam 23068be3dfe1Sksagiyam Level: advanced 23078be3dfe1Sksagiyam 23088be3dfe1Sksagiyam Notes: 23098be3dfe1Sksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 23108be3dfe1Sksagiyam 23118be3dfe1Sksagiyam Typical calling sequence 23128be3dfe1Sksagiyam $ DMCreate(PETSC_COMM_WORLD, &dm); 23138be3dfe1Sksagiyam $ DMSetType(dm, DMPLEX); 23148be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)dm, "topologydm_name"); 23158be3dfe1Sksagiyam $ DMPlexTopologyLoad(dm, viewer, &sfX); 23168be3dfe1Sksagiyam $ DMClone(dm, §iondm); 23178be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)sectiondm, "sectiondm_name"); 23188be3dfe1Sksagiyam $ DMPlexSectionLoad(dm, viewer, sectiondm, sfX, &gsf, NULL); 23198be3dfe1Sksagiyam $ DMGetGlobalVector(sectiondm, &vec); 23208be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)vec, "vec_name"); 23218be3dfe1Sksagiyam $ DMPlexGlobalVectorLoad(dm, viewer, sectiondm, gsf, vec); 23228be3dfe1Sksagiyam $ DMRestoreGlobalVector(sectiondm, &vec); 23238be3dfe1Sksagiyam $ PetscSFDestroy(&gsf); 23248be3dfe1Sksagiyam $ PetscSFDestroy(&sfX); 23258be3dfe1Sksagiyam $ DMDestroy(§iondm); 23268be3dfe1Sksagiyam $ DMDestroy(&dm); 23278be3dfe1Sksagiyam 2328db781477SPatrick Sanan .seealso: `DMPlexTopologyLoad()`, `DMPlexSectionLoad()`, `DMPlexLocalVectorLoad()`, `DMPlexGlobalVectorView()`, `DMPlexLocalVectorView()` 23298be3dfe1Sksagiyam @*/ 23308be3dfe1Sksagiyam PetscErrorCode DMPlexGlobalVectorLoad(DM dm, PetscViewer viewer, DM sectiondm, PetscSF sf, Vec vec) 23318be3dfe1Sksagiyam { 23328be3dfe1Sksagiyam PetscBool ishdf5; 23338be3dfe1Sksagiyam 23348be3dfe1Sksagiyam PetscFunctionBegin; 23358be3dfe1Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23368be3dfe1Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 23378be3dfe1Sksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 23388be3dfe1Sksagiyam PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 4); 23398be3dfe1Sksagiyam PetscValidHeaderSpecific(vec, VEC_CLASSID, 5); 23408be3dfe1Sksagiyam /* Check consistency */ 23418be3dfe1Sksagiyam { 23428be3dfe1Sksagiyam PetscSection section; 23438be3dfe1Sksagiyam PetscBool includesConstraints; 23448be3dfe1Sksagiyam PetscInt m, m1; 23458be3dfe1Sksagiyam 23469566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &m1)); 23479566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(sectiondm, §ion)); 23489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetIncludesConstraints(section, &includesConstraints)); 23499566063dSJacob Faibussowitsch if (includesConstraints) PetscCall(PetscSectionGetStorageSize(section, &m)); 23509566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetConstrainedStorageSize(section, &m)); 235163a3b9bcSJacob Faibussowitsch PetscCheck(m1 == m,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Global vector size (%" PetscInt_FMT ") != global section storage size (%" PetscInt_FMT ")", m1, m); 23528be3dfe1Sksagiyam } 23539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5)); 23549566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_GlobalVectorLoad,viewer,0,0,0)); 23558be3dfe1Sksagiyam if (ishdf5) { 23568be3dfe1Sksagiyam #if defined(PETSC_HAVE_HDF5) 23579566063dSJacob Faibussowitsch PetscCall(DMPlexVecLoad_HDF5_Internal(dm, viewer, sectiondm, sf, vec)); 23588be3dfe1Sksagiyam #else 23598be3dfe1Sksagiyam SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 23608be3dfe1Sksagiyam #endif 23618be3dfe1Sksagiyam } 23629566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_GlobalVectorLoad,viewer,0,0,0)); 23638be3dfe1Sksagiyam PetscFunctionReturn(0); 23648be3dfe1Sksagiyam } 23658be3dfe1Sksagiyam 23668be3dfe1Sksagiyam /*@ 23678be3dfe1Sksagiyam DMPlexLocalVectorLoad - Loads on-disk vector data into a local vector 23688be3dfe1Sksagiyam 23698be3dfe1Sksagiyam Collective on DM 23708be3dfe1Sksagiyam 23718be3dfe1Sksagiyam Input Parameters: 23728be3dfe1Sksagiyam + dm - The DM that represents the topology 23738be3dfe1Sksagiyam . viewer - The PetscViewer that represents the on-disk vector data 23748be3dfe1Sksagiyam . sectiondm - The DM that contains the local section on which vec is defined 23758be3dfe1Sksagiyam . sf - The SF that migrates the on-disk vector data into vec 23768be3dfe1Sksagiyam - vec - The local vector to set values of 23778be3dfe1Sksagiyam 23788be3dfe1Sksagiyam Level: advanced 23798be3dfe1Sksagiyam 23808be3dfe1Sksagiyam Notes: 23818be3dfe1Sksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 23828be3dfe1Sksagiyam 23838be3dfe1Sksagiyam Typical calling sequence 23848be3dfe1Sksagiyam $ DMCreate(PETSC_COMM_WORLD, &dm); 23858be3dfe1Sksagiyam $ DMSetType(dm, DMPLEX); 23868be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)dm, "topologydm_name"); 23878be3dfe1Sksagiyam $ DMPlexTopologyLoad(dm, viewer, &sfX); 23888be3dfe1Sksagiyam $ DMClone(dm, §iondm); 23898be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)sectiondm, "sectiondm_name"); 23908be3dfe1Sksagiyam $ DMPlexSectionLoad(dm, viewer, sectiondm, sfX, NULL, &lsf); 23918be3dfe1Sksagiyam $ DMGetLocalVector(sectiondm, &vec); 23928be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)vec, "vec_name"); 23938be3dfe1Sksagiyam $ DMPlexLocalVectorLoad(dm, viewer, sectiondm, lsf, vec); 23948be3dfe1Sksagiyam $ DMRestoreLocalVector(sectiondm, &vec); 23958be3dfe1Sksagiyam $ PetscSFDestroy(&lsf); 23968be3dfe1Sksagiyam $ PetscSFDestroy(&sfX); 23978be3dfe1Sksagiyam $ DMDestroy(§iondm); 23988be3dfe1Sksagiyam $ DMDestroy(&dm); 23998be3dfe1Sksagiyam 2400db781477SPatrick Sanan .seealso: `DMPlexTopologyLoad()`, `DMPlexSectionLoad()`, `DMPlexGlobalVectorLoad()`, `DMPlexGlobalVectorView()`, `DMPlexLocalVectorView()` 24018be3dfe1Sksagiyam @*/ 24028be3dfe1Sksagiyam PetscErrorCode DMPlexLocalVectorLoad(DM dm, PetscViewer viewer, DM sectiondm, PetscSF sf, Vec vec) 24038be3dfe1Sksagiyam { 24048be3dfe1Sksagiyam PetscBool ishdf5; 24058be3dfe1Sksagiyam 24068be3dfe1Sksagiyam PetscFunctionBegin; 24078be3dfe1Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24088be3dfe1Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 24098be3dfe1Sksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 24108be3dfe1Sksagiyam PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 4); 24118be3dfe1Sksagiyam PetscValidHeaderSpecific(vec, VEC_CLASSID, 5); 24128be3dfe1Sksagiyam /* Check consistency */ 24138be3dfe1Sksagiyam { 24148be3dfe1Sksagiyam PetscSection section; 24158be3dfe1Sksagiyam PetscBool includesConstraints; 24168be3dfe1Sksagiyam PetscInt m, m1; 24178be3dfe1Sksagiyam 24189566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &m1)); 24199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(sectiondm, §ion)); 24209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetIncludesConstraints(section, &includesConstraints)); 24219566063dSJacob Faibussowitsch if (includesConstraints) PetscCall(PetscSectionGetStorageSize(section, &m)); 24229566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetConstrainedStorageSize(section, &m)); 242363a3b9bcSJacob Faibussowitsch PetscCheck(m1 == m,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Local vector size (%" PetscInt_FMT ") != local section storage size (%" PetscInt_FMT ")", m1, m); 24248be3dfe1Sksagiyam } 24259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5)); 24269566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_LocalVectorLoad,viewer,0,0,0)); 24278be3dfe1Sksagiyam if (ishdf5) { 24288be3dfe1Sksagiyam #if defined(PETSC_HAVE_HDF5) 24299566063dSJacob Faibussowitsch PetscCall(DMPlexVecLoad_HDF5_Internal(dm, viewer, sectiondm, sf, vec)); 24308be3dfe1Sksagiyam #else 24318be3dfe1Sksagiyam SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 24328be3dfe1Sksagiyam #endif 24338be3dfe1Sksagiyam } 24349566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_LocalVectorLoad,viewer,0,0,0)); 24358be3dfe1Sksagiyam PetscFunctionReturn(0); 24368be3dfe1Sksagiyam } 24378be3dfe1Sksagiyam 2438552f7358SJed Brown PetscErrorCode DMDestroy_Plex(DM dm) 2439552f7358SJed Brown { 2440552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2441552f7358SJed Brown 2442552f7358SJed Brown PetscFunctionBegin; 24439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMSetUpGLVisViewer_C",NULL)); 24449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexInsertBoundaryValues_C", NULL)); 24459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMCreateNeumannOverlap_C", NULL)); 24469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMInterpolateSolution_C", NULL)); 24472e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexInsertTimeDerviativeBoundaryValues_C", NULL)); 24482e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexGetOverlap_C", NULL)); 24492e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexDistributeGetDefault_C", NULL)); 24502e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexDistributeSetDefault_C", NULL)); 24512e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)dm,"MatComputeNeumannOverlap_C",NULL)); 2452*6bc1bd01Sksagiyam PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexReorderGetDefault_C", NULL)); 2453*6bc1bd01Sksagiyam PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexReorderSetDefault_C", NULL)); 24540d644c17SKarl Rupp if (--mesh->refct > 0) PetscFunctionReturn(0); 24559566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->coneSection)); 24569566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->cones)); 24579566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->coneOrientations)); 24589566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->supportSection)); 24599566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->subdomainSection)); 24609566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->supports)); 24619566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->facesTmp)); 24629566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->tetgenOpts)); 24639566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->triangleOpts)); 24649566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->transformType)); 24659566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&mesh->partitioner)); 24669566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&mesh->subpointMap)); 24679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&mesh->subpointIS)); 24689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&mesh->globalVertexNumbers)); 24699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&mesh->globalCellNumbers)); 24709566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->anchorSection)); 24719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&mesh->anchorIS)); 24729566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->parentSection)); 24739566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->parents)); 24749566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->childIDs)); 24759566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->childSection)); 24769566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->children)); 24779566063dSJacob Faibussowitsch PetscCall(DMDestroy(&mesh->referenceTree)); 24789566063dSJacob Faibussowitsch PetscCall(PetscGridHashDestroy(&mesh->lbox)); 24799566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->neighbors)); 24809566063dSJacob Faibussowitsch if (mesh->metricCtx) PetscCall(PetscFree(mesh->metricCtx)); 2481552f7358SJed Brown /* This was originally freed in DMDestroy(), but that prevents reference counting of backend objects */ 24829566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh)); 2483552f7358SJed Brown PetscFunctionReturn(0); 2484552f7358SJed Brown } 2485552f7358SJed Brown 2486b412c318SBarry Smith PetscErrorCode DMCreateMatrix_Plex(DM dm, Mat *J) 2487552f7358SJed Brown { 24888d1174e4SMatthew G. Knepley PetscSection sectionGlobal; 2489acd755d7SMatthew G. Knepley PetscInt bs = -1, mbs; 2490552f7358SJed Brown PetscInt localSize; 2491837628f4SStefano Zampini PetscBool isShell, isBlock, isSeqBlock, isMPIBlock, isSymBlock, isSymSeqBlock, isSymMPIBlock, isMatIS; 2492b412c318SBarry Smith MatType mtype; 24931428887cSShri Abhyankar ISLocalToGlobalMapping ltog; 2494552f7358SJed Brown 2495552f7358SJed Brown PetscFunctionBegin; 24969566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 2497b412c318SBarry Smith mtype = dm->mattype; 24989566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 24999566063dSJacob Faibussowitsch /* PetscCall(PetscSectionGetStorageSize(sectionGlobal, &localSize)); */ 25009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(sectionGlobal, &localSize)); 25019566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)dm), J)); 25029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*J, localSize, localSize, PETSC_DETERMINE, PETSC_DETERMINE)); 25039566063dSJacob Faibussowitsch PetscCall(MatSetType(*J, mtype)); 25049566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(*J)); 25059566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(*J, &mbs)); 2506acd755d7SMatthew G. Knepley if (mbs > 1) bs = mbs; 25079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATSHELL, &isShell)); 25089566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATBAIJ, &isBlock)); 25099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATSEQBAIJ, &isSeqBlock)); 25109566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATMPIBAIJ, &isMPIBlock)); 25119566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATSBAIJ, &isSymBlock)); 25129566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATSEQSBAIJ, &isSymSeqBlock)); 25139566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATMPISBAIJ, &isSymMPIBlock)); 25149566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATIS, &isMatIS)); 2515552f7358SJed Brown if (!isShell) { 2516837628f4SStefano Zampini PetscBool fillMatrix = (PetscBool)(!dm->prealloc_only && !isMatIS); 2517e432b41dSStefano Zampini PetscInt *dnz, *onz, *dnzu, *onzu, bsLocal[2], bsMinMax[2]; 2518fad22124SMatthew G Knepley PetscInt pStart, pEnd, p, dof, cdof; 2519552f7358SJed Brown 25209566063dSJacob Faibussowitsch PetscCall(DMGetLocalToGlobalMapping(dm,<og)); 25219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 2522e432b41dSStefano Zampini for (p = pStart; p < pEnd; ++p) { 2523a9d99c84SMatthew G. Knepley PetscInt bdof; 2524a9d99c84SMatthew G. Knepley 25259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &dof)); 25269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(sectionGlobal, p, &cdof)); 25271d17a0a3SMatthew G. Knepley dof = dof < 0 ? -(dof+1) : dof; 25281d17a0a3SMatthew G. Knepley bdof = cdof && (dof-cdof) ? 1 : dof; 25291d17a0a3SMatthew G. Knepley if (dof) { 25301d17a0a3SMatthew G. Knepley if (bs < 0) {bs = bdof;} 2531e432b41dSStefano Zampini else if (bs != bdof) {bs = 1; break;} 2532552f7358SJed Brown } 25332a28c762SMatthew G Knepley } 25342a28c762SMatthew G Knepley /* Must have same blocksize on all procs (some might have no points) */ 2535e432b41dSStefano Zampini bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 2536e432b41dSStefano Zampini bsLocal[1] = bs; 25379566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject) dm), bsLocal, bsMinMax)); 2538e432b41dSStefano Zampini if (bsMinMax[0] != bsMinMax[1]) bs = 1; 2539e432b41dSStefano Zampini else bs = bsMinMax[0]; 25406fd5c86aSStefano Zampini bs = PetscMax(1,bs); 25419566063dSJacob Faibussowitsch PetscCall(MatSetLocalToGlobalMapping(*J,ltog,ltog)); 25420682b8bbSJed Brown if (dm->prealloc_skip) { // User will likely use MatSetPreallocationCOO(), but still set structural parameters 25439566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*J, bs)); 25449566063dSJacob Faibussowitsch PetscCall(MatSetUp(*J)); 25450682b8bbSJed Brown } else { 25469566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(localSize/bs, &dnz, localSize/bs, &onz, localSize/bs, &dnzu, localSize/bs, &onzu)); 25479566063dSJacob Faibussowitsch PetscCall(DMPlexPreallocateOperator(dm, bs, dnz, onz, dnzu, onzu, *J, fillMatrix)); 25489566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnz, onz, dnzu, onzu)); 2549552f7358SJed Brown } 2550aa0f6e3cSJed Brown } 25519566063dSJacob Faibussowitsch PetscCall(MatSetDM(*J, dm)); 2552552f7358SJed Brown PetscFunctionReturn(0); 2553552f7358SJed Brown } 2554552f7358SJed Brown 25557cd05799SMatthew G. Knepley /*@ 2556a8f00d21SMatthew G. Knepley DMPlexGetSubdomainSection - Returns the section associated with the subdomain 2557be36d101SStefano Zampini 2558be36d101SStefano Zampini Not collective 2559be36d101SStefano Zampini 2560be36d101SStefano Zampini Input Parameter: 2561be36d101SStefano Zampini . mesh - The DMPlex 2562be36d101SStefano Zampini 2563be36d101SStefano Zampini Output Parameters: 2564be36d101SStefano Zampini . subsection - The subdomain section 2565be36d101SStefano Zampini 2566be36d101SStefano Zampini Level: developer 2567be36d101SStefano Zampini 2568be36d101SStefano Zampini .seealso: 25697cd05799SMatthew G. Knepley @*/ 2570be36d101SStefano Zampini PetscErrorCode DMPlexGetSubdomainSection(DM dm, PetscSection *subsection) 2571be36d101SStefano Zampini { 2572be36d101SStefano Zampini DM_Plex *mesh = (DM_Plex*) dm->data; 2573be36d101SStefano Zampini 2574be36d101SStefano Zampini PetscFunctionBegin; 2575be36d101SStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2576be36d101SStefano Zampini if (!mesh->subdomainSection) { 2577be36d101SStefano Zampini PetscSection section; 2578be36d101SStefano Zampini PetscSF sf; 2579be36d101SStefano Zampini 25809566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF,&sf)); 25819566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm,§ion)); 25829566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(section,sf,PETSC_FALSE,PETSC_TRUE,&mesh->subdomainSection)); 25839566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 2584be36d101SStefano Zampini } 2585be36d101SStefano Zampini *subsection = mesh->subdomainSection; 2586be36d101SStefano Zampini PetscFunctionReturn(0); 2587be36d101SStefano Zampini } 2588be36d101SStefano Zampini 2589552f7358SJed Brown /*@ 2590552f7358SJed Brown DMPlexGetChart - Return the interval for all mesh points [pStart, pEnd) 2591552f7358SJed Brown 2592552f7358SJed Brown Not collective 2593552f7358SJed Brown 2594552f7358SJed Brown Input Parameter: 2595552f7358SJed Brown . mesh - The DMPlex 2596552f7358SJed Brown 2597552f7358SJed Brown Output Parameters: 2598552f7358SJed Brown + pStart - The first mesh point 2599552f7358SJed Brown - pEnd - The upper bound for mesh points 2600552f7358SJed Brown 2601552f7358SJed Brown Level: beginner 2602552f7358SJed Brown 2603db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetChart()` 2604552f7358SJed Brown @*/ 2605552f7358SJed Brown PetscErrorCode DMPlexGetChart(DM dm, PetscInt *pStart, PetscInt *pEnd) 2606552f7358SJed Brown { 2607552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2608552f7358SJed Brown 2609552f7358SJed Brown PetscFunctionBegin; 2610552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, pStart, pEnd)); 2612552f7358SJed Brown PetscFunctionReturn(0); 2613552f7358SJed Brown } 2614552f7358SJed Brown 2615552f7358SJed Brown /*@ 2616552f7358SJed Brown DMPlexSetChart - Set the interval for all mesh points [pStart, pEnd) 2617552f7358SJed Brown 2618552f7358SJed Brown Not collective 2619552f7358SJed Brown 2620552f7358SJed Brown Input Parameters: 2621552f7358SJed Brown + mesh - The DMPlex 2622552f7358SJed Brown . pStart - The first mesh point 2623552f7358SJed Brown - pEnd - The upper bound for mesh points 2624552f7358SJed Brown 2625552f7358SJed Brown Output Parameters: 2626552f7358SJed Brown 2627552f7358SJed Brown Level: beginner 2628552f7358SJed Brown 2629db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetChart()` 2630552f7358SJed Brown @*/ 2631552f7358SJed Brown PetscErrorCode DMPlexSetChart(DM dm, PetscInt pStart, PetscInt pEnd) 2632552f7358SJed Brown { 2633552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2634552f7358SJed Brown 2635552f7358SJed Brown PetscFunctionBegin; 2636552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26379566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(mesh->coneSection, pStart, pEnd)); 26389566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(mesh->supportSection, pStart, pEnd)); 2639552f7358SJed Brown PetscFunctionReturn(0); 2640552f7358SJed Brown } 2641552f7358SJed Brown 2642552f7358SJed Brown /*@ 2643eaf898f9SPatrick Sanan DMPlexGetConeSize - Return the number of in-edges for this point in the DAG 2644552f7358SJed Brown 2645552f7358SJed Brown Not collective 2646552f7358SJed Brown 2647552f7358SJed Brown Input Parameters: 2648552f7358SJed Brown + mesh - The DMPlex 2649eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 2650552f7358SJed Brown 2651552f7358SJed Brown Output Parameter: 2652552f7358SJed Brown . size - The cone size for point p 2653552f7358SJed Brown 2654552f7358SJed Brown Level: beginner 2655552f7358SJed Brown 2656db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetConeSize()`, `DMPlexSetChart()` 2657552f7358SJed Brown @*/ 2658552f7358SJed Brown PetscErrorCode DMPlexGetConeSize(DM dm, PetscInt p, PetscInt *size) 2659552f7358SJed Brown { 2660552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2661552f7358SJed Brown 2662552f7358SJed Brown PetscFunctionBegin; 2663552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2664dadcf809SJacob Faibussowitsch PetscValidIntPointer(size, 3); 26659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, size)); 2666552f7358SJed Brown PetscFunctionReturn(0); 2667552f7358SJed Brown } 2668552f7358SJed Brown 2669552f7358SJed Brown /*@ 2670eaf898f9SPatrick Sanan DMPlexSetConeSize - Set the number of in-edges for this point in the DAG 2671552f7358SJed Brown 2672552f7358SJed Brown Not collective 2673552f7358SJed Brown 2674552f7358SJed Brown Input Parameters: 2675552f7358SJed Brown + mesh - The DMPlex 2676eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 2677552f7358SJed Brown - size - The cone size for point p 2678552f7358SJed Brown 2679552f7358SJed Brown Output Parameter: 2680552f7358SJed Brown 2681552f7358SJed Brown Note: 2682552f7358SJed Brown This should be called after DMPlexSetChart(). 2683552f7358SJed Brown 2684552f7358SJed Brown Level: beginner 2685552f7358SJed Brown 2686db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetConeSize()`, `DMPlexSetChart()` 2687552f7358SJed Brown @*/ 2688552f7358SJed Brown PetscErrorCode DMPlexSetConeSize(DM dm, PetscInt p, PetscInt size) 2689552f7358SJed Brown { 2690552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2691552f7358SJed Brown 2692552f7358SJed Brown PetscFunctionBegin; 2693552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26949566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(mesh->coneSection, p, size)); 2695552f7358SJed Brown PetscFunctionReturn(0); 2696552f7358SJed Brown } 2697552f7358SJed Brown 2698f5a469b9SMatthew G. Knepley /*@ 2699eaf898f9SPatrick Sanan DMPlexAddConeSize - Add the given number of in-edges to this point in the DAG 2700f5a469b9SMatthew G. Knepley 2701f5a469b9SMatthew G. Knepley Not collective 2702f5a469b9SMatthew G. Knepley 2703f5a469b9SMatthew G. Knepley Input Parameters: 2704f5a469b9SMatthew G. Knepley + mesh - The DMPlex 2705eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 2706f5a469b9SMatthew G. Knepley - size - The additional cone size for point p 2707f5a469b9SMatthew G. Knepley 2708f5a469b9SMatthew G. Knepley Output Parameter: 2709f5a469b9SMatthew G. Knepley 2710f5a469b9SMatthew G. Knepley Note: 2711f5a469b9SMatthew G. Knepley This should be called after DMPlexSetChart(). 2712f5a469b9SMatthew G. Knepley 2713f5a469b9SMatthew G. Knepley Level: beginner 2714f5a469b9SMatthew G. Knepley 2715db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetConeSize()`, `DMPlexGetConeSize()`, `DMPlexSetChart()` 2716f5a469b9SMatthew G. Knepley @*/ 2717f5a469b9SMatthew G. Knepley PetscErrorCode DMPlexAddConeSize(DM dm, PetscInt p, PetscInt size) 2718f5a469b9SMatthew G. Knepley { 2719f5a469b9SMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 2720f5a469b9SMatthew G. Knepley PetscFunctionBegin; 2721f5a469b9SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27229566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(mesh->coneSection, p, size)); 2723f5a469b9SMatthew G. Knepley PetscFunctionReturn(0); 2724f5a469b9SMatthew G. Knepley } 2725f5a469b9SMatthew G. Knepley 2726552f7358SJed Brown /*@C 2727eaf898f9SPatrick Sanan DMPlexGetCone - Return the points on the in-edges for this point in the DAG 2728552f7358SJed Brown 2729552f7358SJed Brown Not collective 2730552f7358SJed Brown 2731552f7358SJed Brown Input Parameters: 2732833c876bSVaclav Hapla + dm - The DMPlex 2733eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 2734552f7358SJed Brown 2735552f7358SJed Brown Output Parameter: 2736552f7358SJed Brown . cone - An array of points which are on the in-edges for point p 2737552f7358SJed Brown 2738552f7358SJed Brown Level: beginner 2739552f7358SJed Brown 27403813dfbdSMatthew G Knepley Fortran Notes: 27413813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 27423813dfbdSMatthew G Knepley include petsc.h90 in your code. 2743922102d1SVaclav Hapla You must also call DMPlexRestoreCone() after you finish using the returned array. 2744922102d1SVaclav Hapla DMPlexRestoreCone() is not needed/available in C. 27453813dfbdSMatthew G Knepley 2746db781477SPatrick Sanan .seealso: `DMPlexGetConeSize()`, `DMPlexSetCone()`, `DMPlexGetConeTuple()`, `DMPlexSetChart()` 2747552f7358SJed Brown @*/ 2748552f7358SJed Brown PetscErrorCode DMPlexGetCone(DM dm, PetscInt p, const PetscInt *cone[]) 2749552f7358SJed Brown { 2750552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2751552f7358SJed Brown PetscInt off; 2752552f7358SJed Brown 2753552f7358SJed Brown PetscFunctionBegin; 2754552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2755552f7358SJed Brown PetscValidPointer(cone, 3); 27569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 2757552f7358SJed Brown *cone = &mesh->cones[off]; 2758552f7358SJed Brown PetscFunctionReturn(0); 2759552f7358SJed Brown } 2760552f7358SJed Brown 27610ce7577fSVaclav Hapla /*@C 27620ce7577fSVaclav Hapla DMPlexGetConeTuple - Return the points on the in-edges of several points in the DAG 27630ce7577fSVaclav Hapla 27640ce7577fSVaclav Hapla Not collective 27650ce7577fSVaclav Hapla 27660ce7577fSVaclav Hapla Input Parameters: 27670ce7577fSVaclav Hapla + dm - The DMPlex 27680ce7577fSVaclav Hapla - p - The IS of points, which must lie in the chart set with DMPlexSetChart() 27690ce7577fSVaclav Hapla 2770d8d19677SJose E. Roman Output Parameters: 27710ce7577fSVaclav Hapla + pConesSection - PetscSection describing the layout of pCones 27720ce7577fSVaclav Hapla - pCones - An array of points which are on the in-edges for the point set p 27730ce7577fSVaclav Hapla 27740ce7577fSVaclav Hapla Level: intermediate 27750ce7577fSVaclav Hapla 2776db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexGetConeRecursive()`, `DMPlexSetChart()` 27770ce7577fSVaclav Hapla @*/ 27780ce7577fSVaclav Hapla PetscErrorCode DMPlexGetConeTuple(DM dm, IS p, PetscSection *pConesSection, IS *pCones) 27790ce7577fSVaclav Hapla { 27800ce7577fSVaclav Hapla PetscSection cs, newcs; 27810ce7577fSVaclav Hapla PetscInt *cones; 27820ce7577fSVaclav Hapla PetscInt *newarr=NULL; 27830ce7577fSVaclav Hapla PetscInt n; 27840ce7577fSVaclav Hapla 27850ce7577fSVaclav Hapla PetscFunctionBegin; 27869566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dm, &cones)); 27879566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &cs)); 27889566063dSJacob Faibussowitsch PetscCall(PetscSectionExtractDofsFromArray(cs, MPIU_INT, cones, p, &newcs, pCones ? ((void**)&newarr) : NULL)); 27890ce7577fSVaclav Hapla if (pConesSection) *pConesSection = newcs; 27900ce7577fSVaclav Hapla if (pCones) { 27919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newcs, &n)); 27929566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)p), n, newarr, PETSC_OWN_POINTER, pCones)); 27930ce7577fSVaclav Hapla } 27940ce7577fSVaclav Hapla PetscFunctionReturn(0); 27950ce7577fSVaclav Hapla } 27960ce7577fSVaclav Hapla 2797af9eab45SVaclav Hapla /*@ 2798af9eab45SVaclav Hapla DMPlexGetConeRecursiveVertices - Expand each given point into its cone points and do that recursively until we end up just with vertices. 2799d4636a37SVaclav Hapla 2800d4636a37SVaclav Hapla Not collective 2801d4636a37SVaclav Hapla 2802d4636a37SVaclav Hapla Input Parameters: 2803d4636a37SVaclav Hapla + dm - The DMPlex 2804af9eab45SVaclav Hapla - points - The IS of points, which must lie in the chart set with DMPlexSetChart() 2805d4636a37SVaclav Hapla 2806d4636a37SVaclav Hapla Output Parameter: 2807af9eab45SVaclav Hapla . expandedPoints - An array of vertices recursively expanded from input points 2808d4636a37SVaclav Hapla 2809d4636a37SVaclav Hapla Level: advanced 2810d4636a37SVaclav Hapla 2811af9eab45SVaclav Hapla Notes: 2812af9eab45SVaclav Hapla Like DMPlexGetConeRecursive but returns only the 0-depth IS (i.e. vertices only) and no sections. 2813af9eab45SVaclav Hapla There is no corresponding Restore function, just call ISDestroy() on the returned IS to deallocate. 2814af9eab45SVaclav Hapla 2815db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexGetConeTuple()`, `DMPlexGetConeRecursive()`, `DMPlexRestoreConeRecursive()`, `DMPlexGetDepth()` 2816d4636a37SVaclav Hapla @*/ 2817af9eab45SVaclav Hapla PetscErrorCode DMPlexGetConeRecursiveVertices(DM dm, IS points, IS *expandedPoints) 2818d4636a37SVaclav Hapla { 2819af9eab45SVaclav Hapla IS *expandedPointsAll; 2820af9eab45SVaclav Hapla PetscInt depth; 2821d4636a37SVaclav Hapla 2822d4636a37SVaclav Hapla PetscFunctionBegin; 2823af9eab45SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2824af9eab45SVaclav Hapla PetscValidHeaderSpecific(points, IS_CLASSID, 2); 2825af9eab45SVaclav Hapla PetscValidPointer(expandedPoints, 3); 28269566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeRecursive(dm, points, &depth, &expandedPointsAll, NULL)); 2827af9eab45SVaclav Hapla *expandedPoints = expandedPointsAll[0]; 28289566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)expandedPointsAll[0])); 28299566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreConeRecursive(dm, points, &depth, &expandedPointsAll, NULL)); 2830af9eab45SVaclav Hapla PetscFunctionReturn(0); 2831af9eab45SVaclav Hapla } 2832af9eab45SVaclav Hapla 2833af9eab45SVaclav Hapla /*@ 2834af9eab45SVaclav Hapla DMPlexGetConeRecursive - Expand each given point into its cone points and do that recursively until we end up just with vertices (DAG points of depth 0, i.e. without cones). 2835af9eab45SVaclav Hapla 2836af9eab45SVaclav Hapla Not collective 2837af9eab45SVaclav Hapla 2838af9eab45SVaclav Hapla Input Parameters: 2839af9eab45SVaclav Hapla + dm - The DMPlex 2840af9eab45SVaclav Hapla - points - The IS of points, which must lie in the chart set with DMPlexSetChart() 2841af9eab45SVaclav Hapla 2842d8d19677SJose E. Roman Output Parameters: 2843af9eab45SVaclav Hapla + depth - (optional) Size of the output arrays, equal to DMPlex depth, returned by DMPlexGetDepth() 2844af9eab45SVaclav Hapla . expandedPoints - (optional) An array of index sets with recursively expanded cones 2845af9eab45SVaclav Hapla - sections - (optional) An array of sections which describe mappings from points to their cone points 2846af9eab45SVaclav Hapla 2847af9eab45SVaclav Hapla Level: advanced 2848af9eab45SVaclav Hapla 2849af9eab45SVaclav Hapla Notes: 2850af9eab45SVaclav Hapla Like DMPlexGetConeTuple() but recursive. 2851af9eab45SVaclav Hapla 2852af9eab45SVaclav Hapla Array expandedPoints has size equal to depth. Each expandedPoints[d] contains DAG points with maximum depth d, recursively cone-wise expanded from the input points. 2853af9eab45SVaclav Hapla For example, for d=0 it contains only vertices, for d=1 it can contain vertices and edges, etc. 2854af9eab45SVaclav Hapla 2855af9eab45SVaclav Hapla Array section has size equal to depth. Each PetscSection sections[d] realizes mapping from expandedPoints[d+1] (section points) to expandedPoints[d] (section dofs) as follows: 2856af9eab45SVaclav Hapla (1) DAG points in expandedPoints[d+1] with depth d+1 to their cone points in expandedPoints[d]; 2857af9eab45SVaclav Hapla (2) DAG points in expandedPoints[d+1] with depth in [0,d] to the same points in expandedPoints[d]. 2858af9eab45SVaclav Hapla 2859db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexGetConeTuple()`, `DMPlexRestoreConeRecursive()`, `DMPlexGetConeRecursiveVertices()`, `DMPlexGetDepth()` 2860af9eab45SVaclav Hapla @*/ 2861af9eab45SVaclav Hapla PetscErrorCode DMPlexGetConeRecursive(DM dm, IS points, PetscInt *depth, IS *expandedPoints[], PetscSection *sections[]) 2862af9eab45SVaclav Hapla { 2863af9eab45SVaclav Hapla const PetscInt *arr0=NULL, *cone=NULL; 2864af9eab45SVaclav Hapla PetscInt *arr=NULL, *newarr=NULL; 2865af9eab45SVaclav Hapla PetscInt d, depth_, i, n, newn, cn, co, start, end; 2866af9eab45SVaclav Hapla IS *expandedPoints_; 2867af9eab45SVaclav Hapla PetscSection *sections_; 2868af9eab45SVaclav Hapla 2869af9eab45SVaclav Hapla PetscFunctionBegin; 2870af9eab45SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2871af9eab45SVaclav Hapla PetscValidHeaderSpecific(points, IS_CLASSID, 2); 2872af9eab45SVaclav Hapla if (depth) PetscValidIntPointer(depth, 3); 2873af9eab45SVaclav Hapla if (expandedPoints) PetscValidPointer(expandedPoints, 4); 2874af9eab45SVaclav Hapla if (sections) PetscValidPointer(sections, 5); 28759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(points, &n)); 28769566063dSJacob Faibussowitsch PetscCall(ISGetIndices(points, &arr0)); 28779566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth_)); 28789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(depth_, &expandedPoints_)); 28799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(depth_, §ions_)); 2880af9eab45SVaclav Hapla arr = (PetscInt*) arr0; /* this is ok because first generation of arr is not modified */ 2881af9eab45SVaclav Hapla for (d=depth_-1; d>=0; d--) { 28829566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, §ions_[d])); 28839566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(sections_[d], 0, n)); 2884af9eab45SVaclav Hapla for (i=0; i<n; i++) { 28859566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d+1, &start, &end)); 2886af9eab45SVaclav Hapla if (arr[i] >= start && arr[i] < end) { 28879566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, arr[i], &cn)); 28889566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(sections_[d], i, cn)); 2889af9eab45SVaclav Hapla } else { 28909566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(sections_[d], i, 1)); 2891af9eab45SVaclav Hapla } 2892af9eab45SVaclav Hapla } 28939566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(sections_[d])); 28949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(sections_[d], &newn)); 28959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newn, &newarr)); 2896af9eab45SVaclav Hapla for (i=0; i<n; i++) { 28979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sections_[d], i, &cn)); 28989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sections_[d], i, &co)); 2899af9eab45SVaclav Hapla if (cn > 1) { 29009566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, arr[i], &cone)); 29019566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(&newarr[co], cone, cn*sizeof(PetscInt))); 2902af9eab45SVaclav Hapla } else { 2903af9eab45SVaclav Hapla newarr[co] = arr[i]; 2904af9eab45SVaclav Hapla } 2905af9eab45SVaclav Hapla } 29069566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, newn, newarr, PETSC_OWN_POINTER, &expandedPoints_[d])); 2907af9eab45SVaclav Hapla arr = newarr; 2908af9eab45SVaclav Hapla n = newn; 2909af9eab45SVaclav Hapla } 29109566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(points, &arr0)); 2911af9eab45SVaclav Hapla *depth = depth_; 2912af9eab45SVaclav Hapla if (expandedPoints) *expandedPoints = expandedPoints_; 2913af9eab45SVaclav Hapla else { 29149566063dSJacob Faibussowitsch for (d=0; d<depth_; d++) PetscCall(ISDestroy(&expandedPoints_[d])); 29159566063dSJacob Faibussowitsch PetscCall(PetscFree(expandedPoints_)); 2916af9eab45SVaclav Hapla } 2917af9eab45SVaclav Hapla if (sections) *sections = sections_; 2918af9eab45SVaclav Hapla else { 29199566063dSJacob Faibussowitsch for (d=0; d<depth_; d++) PetscCall(PetscSectionDestroy(§ions_[d])); 29209566063dSJacob Faibussowitsch PetscCall(PetscFree(sections_)); 2921af9eab45SVaclav Hapla } 2922af9eab45SVaclav Hapla PetscFunctionReturn(0); 2923af9eab45SVaclav Hapla } 2924af9eab45SVaclav Hapla 2925af9eab45SVaclav Hapla /*@ 2926af9eab45SVaclav Hapla DMPlexRestoreConeRecursive - Deallocates arrays created by DMPlexGetConeRecursive 2927af9eab45SVaclav Hapla 2928af9eab45SVaclav Hapla Not collective 2929af9eab45SVaclav Hapla 2930af9eab45SVaclav Hapla Input Parameters: 2931af9eab45SVaclav Hapla + dm - The DMPlex 2932af9eab45SVaclav Hapla - points - The IS of points, which must lie in the chart set with DMPlexSetChart() 2933af9eab45SVaclav Hapla 2934d8d19677SJose E. Roman Output Parameters: 2935af9eab45SVaclav Hapla + depth - (optional) Size of the output arrays, equal to DMPlex depth, returned by DMPlexGetDepth() 2936af9eab45SVaclav Hapla . expandedPoints - (optional) An array of recursively expanded cones 2937af9eab45SVaclav Hapla - sections - (optional) An array of sections which describe mappings from points to their cone points 2938af9eab45SVaclav Hapla 2939af9eab45SVaclav Hapla Level: advanced 2940af9eab45SVaclav Hapla 2941af9eab45SVaclav Hapla Notes: 2942af9eab45SVaclav Hapla See DMPlexGetConeRecursive() for details. 2943af9eab45SVaclav Hapla 2944db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexGetConeTuple()`, `DMPlexGetConeRecursive()`, `DMPlexGetConeRecursiveVertices()`, `DMPlexGetDepth()` 2945af9eab45SVaclav Hapla @*/ 2946af9eab45SVaclav Hapla PetscErrorCode DMPlexRestoreConeRecursive(DM dm, IS points, PetscInt *depth, IS *expandedPoints[], PetscSection *sections[]) 2947af9eab45SVaclav Hapla { 2948af9eab45SVaclav Hapla PetscInt d, depth_; 2949af9eab45SVaclav Hapla 2950af9eab45SVaclav Hapla PetscFunctionBegin; 29519566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth_)); 29521dca8a05SBarry Smith PetscCheck(!depth || *depth == depth_,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "depth changed since last call to DMPlexGetConeRecursive"); 2953af9eab45SVaclav Hapla if (depth) *depth = 0; 2954af9eab45SVaclav Hapla if (expandedPoints) { 29559566063dSJacob Faibussowitsch for (d=0; d<depth_; d++) PetscCall(ISDestroy(&((*expandedPoints)[d]))); 29569566063dSJacob Faibussowitsch PetscCall(PetscFree(*expandedPoints)); 2957af9eab45SVaclav Hapla } 2958af9eab45SVaclav Hapla if (sections) { 29599566063dSJacob Faibussowitsch for (d=0; d<depth_; d++) PetscCall(PetscSectionDestroy(&((*sections)[d]))); 29609566063dSJacob Faibussowitsch PetscCall(PetscFree(*sections)); 2961af9eab45SVaclav Hapla } 2962d4636a37SVaclav Hapla PetscFunctionReturn(0); 2963d4636a37SVaclav Hapla } 2964d4636a37SVaclav Hapla 2965552f7358SJed Brown /*@ 296692371b87SBarry Smith DMPlexSetCone - Set the points on the in-edges for this point in the DAG; that is these are the points that cover the specific point 2967552f7358SJed Brown 2968552f7358SJed Brown Not collective 2969552f7358SJed Brown 2970552f7358SJed Brown Input Parameters: 2971552f7358SJed Brown + mesh - The DMPlex 2972eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 2973552f7358SJed Brown - cone - An array of points which are on the in-edges for point p 2974552f7358SJed Brown 2975552f7358SJed Brown Output Parameter: 2976552f7358SJed Brown 2977552f7358SJed Brown Note: 2978552f7358SJed Brown This should be called after all calls to DMPlexSetConeSize() and DMSetUp(). 2979552f7358SJed Brown 2980552f7358SJed Brown Level: beginner 2981552f7358SJed Brown 2982db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()`, `DMPlexSetSupport()`, `DMPlexSetSupportSize()` 2983552f7358SJed Brown @*/ 2984552f7358SJed Brown PetscErrorCode DMPlexSetCone(DM dm, PetscInt p, const PetscInt cone[]) 2985552f7358SJed Brown { 2986552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2987552f7358SJed Brown PetscInt pStart, pEnd; 2988552f7358SJed Brown PetscInt dof, off, c; 2989552f7358SJed Brown 2990552f7358SJed Brown PetscFunctionBegin; 2991552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, &pStart, &pEnd)); 29939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 2994dadcf809SJacob Faibussowitsch if (dof) PetscValidIntPointer(cone, 3); 29959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 299663a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 2997552f7358SJed Brown for (c = 0; c < dof; ++c) { 299863a3b9bcSJacob Faibussowitsch PetscCheck(!(cone[c] < pStart) && !(cone[c] >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", cone[c], pStart, pEnd); 2999552f7358SJed Brown mesh->cones[off+c] = cone[c]; 3000552f7358SJed Brown } 3001552f7358SJed Brown PetscFunctionReturn(0); 3002552f7358SJed Brown } 3003552f7358SJed Brown 3004552f7358SJed Brown /*@C 3005eaf898f9SPatrick Sanan DMPlexGetConeOrientation - Return the orientations on the in-edges for this point in the DAG 3006552f7358SJed Brown 3007552f7358SJed Brown Not collective 3008552f7358SJed Brown 3009552f7358SJed Brown Input Parameters: 3010552f7358SJed Brown + mesh - The DMPlex 3011eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 3012552f7358SJed Brown 3013552f7358SJed Brown Output Parameter: 3014552f7358SJed Brown . coneOrientation - An array of orientations which are on the in-edges for point p. An orientation is an 3015b5a892a1SMatthew G. Knepley integer giving the prescription for cone traversal. 3016552f7358SJed Brown 3017552f7358SJed Brown Level: beginner 3018552f7358SJed Brown 3019b5a892a1SMatthew G. Knepley Notes: 3020b5a892a1SMatthew G. Knepley The number indexes the symmetry transformations for the cell type (see manual). Orientation 0 is always 3021b5a892a1SMatthew G. Knepley the identity transformation. Negative orientation indicates reflection so that -(o+1) is the reflection 3022b5a892a1SMatthew G. Knepley of o, however it is not necessarily the inverse. To get the inverse, use DMPolytopeTypeComposeOrientationInv() 3023b5a892a1SMatthew G. Knepley with the identity. 3024b5a892a1SMatthew G. Knepley 30253813dfbdSMatthew G Knepley Fortran Notes: 30263813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 30273813dfbdSMatthew G Knepley include petsc.h90 in your code. 30283b12b3d8SVaclav Hapla You must also call DMPlexRestoreConeOrientation() after you finish using the returned array. 3029922102d1SVaclav Hapla DMPlexRestoreConeOrientation() is not needed/available in C. 30303813dfbdSMatthew G Knepley 3031db781477SPatrick Sanan .seealso: `DMPolytopeTypeComposeOrientation()`, `DMPolytopeTypeComposeOrientationInv()`, `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetCone()`, `DMPlexSetChart()` 3032552f7358SJed Brown @*/ 3033552f7358SJed Brown PetscErrorCode DMPlexGetConeOrientation(DM dm, PetscInt p, const PetscInt *coneOrientation[]) 3034552f7358SJed Brown { 3035552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3036552f7358SJed Brown PetscInt off; 3037552f7358SJed Brown 3038552f7358SJed Brown PetscFunctionBegin; 3039552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 304076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 3041552f7358SJed Brown PetscInt dof; 30429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 3043552f7358SJed Brown if (dof) PetscValidPointer(coneOrientation, 3); 3044552f7358SJed Brown } 30459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 30460d644c17SKarl Rupp 3047552f7358SJed Brown *coneOrientation = &mesh->coneOrientations[off]; 3048552f7358SJed Brown PetscFunctionReturn(0); 3049552f7358SJed Brown } 3050552f7358SJed Brown 3051552f7358SJed Brown /*@ 3052eaf898f9SPatrick Sanan DMPlexSetConeOrientation - Set the orientations on the in-edges for this point in the DAG 3053552f7358SJed Brown 3054552f7358SJed Brown Not collective 3055552f7358SJed Brown 3056552f7358SJed Brown Input Parameters: 3057552f7358SJed Brown + mesh - The DMPlex 3058eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 3059b5a892a1SMatthew G. Knepley - coneOrientation - An array of orientations 3060552f7358SJed Brown Output Parameter: 3061552f7358SJed Brown 3062b5a892a1SMatthew G. Knepley Notes: 3063552f7358SJed Brown This should be called after all calls to DMPlexSetConeSize() and DMSetUp(). 3064552f7358SJed Brown 3065b5a892a1SMatthew G. Knepley The meaning of coneOrientation is detailed in DMPlexGetConeOrientation(). 3066b5a892a1SMatthew G. Knepley 3067552f7358SJed Brown Level: beginner 3068552f7358SJed Brown 3069db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetConeOrientation()`, `DMPlexSetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()` 3070552f7358SJed Brown @*/ 3071552f7358SJed Brown PetscErrorCode DMPlexSetConeOrientation(DM dm, PetscInt p, const PetscInt coneOrientation[]) 3072552f7358SJed Brown { 3073552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3074552f7358SJed Brown PetscInt pStart, pEnd; 3075552f7358SJed Brown PetscInt dof, off, c; 3076552f7358SJed Brown 3077552f7358SJed Brown PetscFunctionBegin; 3078552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 30799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, &pStart, &pEnd)); 30809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 3081dadcf809SJacob Faibussowitsch if (dof) PetscValidIntPointer(coneOrientation, 3); 30829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 308363a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 3084552f7358SJed Brown for (c = 0; c < dof; ++c) { 3085552f7358SJed Brown PetscInt cdof, o = coneOrientation[c]; 3086552f7358SJed Brown 30879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, mesh->cones[off+c], &cdof)); 30881dca8a05SBarry Smith PetscCheck(!o || (o >= -(cdof+1) && o < cdof),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone orientation %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ". %" PetscInt_FMT ")", o, -(cdof+1), cdof); 3089552f7358SJed Brown mesh->coneOrientations[off+c] = o; 3090552f7358SJed Brown } 3091552f7358SJed Brown PetscFunctionReturn(0); 3092552f7358SJed Brown } 3093552f7358SJed Brown 30947cd05799SMatthew G. Knepley /*@ 3095eaf898f9SPatrick Sanan DMPlexInsertCone - Insert a point into the in-edges for the point p in the DAG 30967cd05799SMatthew G. Knepley 30977cd05799SMatthew G. Knepley Not collective 30987cd05799SMatthew G. Knepley 30997cd05799SMatthew G. Knepley Input Parameters: 31007cd05799SMatthew G. Knepley + mesh - The DMPlex 3101eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 31027cd05799SMatthew G. Knepley . conePos - The local index in the cone where the point should be put 31037cd05799SMatthew G. Knepley - conePoint - The mesh point to insert 31047cd05799SMatthew G. Knepley 31057cd05799SMatthew G. Knepley Level: beginner 31067cd05799SMatthew G. Knepley 3107db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()` 31087cd05799SMatthew G. Knepley @*/ 3109552f7358SJed Brown PetscErrorCode DMPlexInsertCone(DM dm, PetscInt p, PetscInt conePos, PetscInt conePoint) 3110552f7358SJed Brown { 3111552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3112552f7358SJed Brown PetscInt pStart, pEnd; 3113552f7358SJed Brown PetscInt dof, off; 3114552f7358SJed Brown 3115552f7358SJed Brown PetscFunctionBegin; 3116552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, &pStart, &pEnd)); 311863a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 311963a3b9bcSJacob Faibussowitsch PetscCheck(!(conePoint < pStart) && !(conePoint >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", conePoint, pStart, pEnd); 31209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 31219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 312263a3b9bcSJacob Faibussowitsch PetscCheck(!(conePos < 0) && !(conePos >= dof),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone position %" PetscInt_FMT " of point %" PetscInt_FMT " is not in the valid range [0, %" PetscInt_FMT ")", conePos, p, dof); 3123552f7358SJed Brown mesh->cones[off+conePos] = conePoint; 3124552f7358SJed Brown PetscFunctionReturn(0); 3125552f7358SJed Brown } 3126552f7358SJed Brown 31277cd05799SMatthew G. Knepley /*@ 3128eaf898f9SPatrick Sanan DMPlexInsertConeOrientation - Insert a point orientation for the in-edge for the point p in the DAG 31297cd05799SMatthew G. Knepley 31307cd05799SMatthew G. Knepley Not collective 31317cd05799SMatthew G. Knepley 31327cd05799SMatthew G. Knepley Input Parameters: 31337cd05799SMatthew G. Knepley + mesh - The DMPlex 3134eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 31357cd05799SMatthew G. Knepley . conePos - The local index in the cone where the point should be put 31367cd05799SMatthew G. Knepley - coneOrientation - The point orientation to insert 31377cd05799SMatthew G. Knepley 31387cd05799SMatthew G. Knepley Level: beginner 31397cd05799SMatthew G. Knepley 3140b5a892a1SMatthew G. Knepley Notes: 3141b5a892a1SMatthew G. Knepley The meaning of coneOrientation values is detailed in DMPlexGetConeOrientation(). 3142b5a892a1SMatthew G. Knepley 3143db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()` 31447cd05799SMatthew G. Knepley @*/ 314577c88f5bSMatthew G Knepley PetscErrorCode DMPlexInsertConeOrientation(DM dm, PetscInt p, PetscInt conePos, PetscInt coneOrientation) 314677c88f5bSMatthew G Knepley { 314777c88f5bSMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 314877c88f5bSMatthew G Knepley PetscInt pStart, pEnd; 314977c88f5bSMatthew G Knepley PetscInt dof, off; 315077c88f5bSMatthew G Knepley 315177c88f5bSMatthew G Knepley PetscFunctionBegin; 315277c88f5bSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, &pStart, &pEnd)); 315463a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 31559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 31569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 315763a3b9bcSJacob Faibussowitsch PetscCheck(!(conePos < 0) && !(conePos >= dof),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone position %" PetscInt_FMT " of point %" PetscInt_FMT " is not in the valid range [0, %" PetscInt_FMT ")", conePos, p, dof); 315877c88f5bSMatthew G Knepley mesh->coneOrientations[off+conePos] = coneOrientation; 315977c88f5bSMatthew G Knepley PetscFunctionReturn(0); 316077c88f5bSMatthew G Knepley } 316177c88f5bSMatthew G Knepley 3162552f7358SJed Brown /*@ 3163eaf898f9SPatrick Sanan DMPlexGetSupportSize - Return the number of out-edges for this point in the DAG 3164552f7358SJed Brown 3165552f7358SJed Brown Not collective 3166552f7358SJed Brown 3167552f7358SJed Brown Input Parameters: 3168552f7358SJed Brown + mesh - The DMPlex 3169eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 3170552f7358SJed Brown 3171552f7358SJed Brown Output Parameter: 3172552f7358SJed Brown . size - The support size for point p 3173552f7358SJed Brown 3174552f7358SJed Brown Level: beginner 3175552f7358SJed Brown 3176db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetConeSize()`, `DMPlexSetChart()`, `DMPlexGetConeSize()` 3177552f7358SJed Brown @*/ 3178552f7358SJed Brown PetscErrorCode DMPlexGetSupportSize(DM dm, PetscInt p, PetscInt *size) 3179552f7358SJed Brown { 3180552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3181552f7358SJed Brown 3182552f7358SJed Brown PetscFunctionBegin; 3183552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3184dadcf809SJacob Faibussowitsch PetscValidIntPointer(size, 3); 31859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, p, size)); 3186552f7358SJed Brown PetscFunctionReturn(0); 3187552f7358SJed Brown } 3188552f7358SJed Brown 3189552f7358SJed Brown /*@ 3190eaf898f9SPatrick Sanan DMPlexSetSupportSize - Set the number of out-edges for this point in the DAG 3191552f7358SJed Brown 3192552f7358SJed Brown Not collective 3193552f7358SJed Brown 3194552f7358SJed Brown Input Parameters: 3195552f7358SJed Brown + mesh - The DMPlex 3196eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 3197552f7358SJed Brown - size - The support size for point p 3198552f7358SJed Brown 3199552f7358SJed Brown Output Parameter: 3200552f7358SJed Brown 3201552f7358SJed Brown Note: 3202552f7358SJed Brown This should be called after DMPlexSetChart(). 3203552f7358SJed Brown 3204552f7358SJed Brown Level: beginner 3205552f7358SJed Brown 3206db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetSupportSize()`, `DMPlexSetChart()` 3207552f7358SJed Brown @*/ 3208552f7358SJed Brown PetscErrorCode DMPlexSetSupportSize(DM dm, PetscInt p, PetscInt size) 3209552f7358SJed Brown { 3210552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3211552f7358SJed Brown 3212552f7358SJed Brown PetscFunctionBegin; 3213552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32149566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(mesh->supportSection, p, size)); 3215552f7358SJed Brown PetscFunctionReturn(0); 3216552f7358SJed Brown } 3217552f7358SJed Brown 3218552f7358SJed Brown /*@C 3219eaf898f9SPatrick Sanan DMPlexGetSupport - Return the points on the out-edges for this point in the DAG 3220552f7358SJed Brown 3221552f7358SJed Brown Not collective 3222552f7358SJed Brown 3223552f7358SJed Brown Input Parameters: 3224552f7358SJed Brown + mesh - The DMPlex 3225eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 3226552f7358SJed Brown 3227552f7358SJed Brown Output Parameter: 3228552f7358SJed Brown . support - An array of points which are on the out-edges for point p 3229552f7358SJed Brown 3230552f7358SJed Brown Level: beginner 3231552f7358SJed Brown 32323813dfbdSMatthew G Knepley Fortran Notes: 32333813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 32343813dfbdSMatthew G Knepley include petsc.h90 in your code. 32353b12b3d8SVaclav Hapla You must also call DMPlexRestoreSupport() after you finish using the returned array. 3236922102d1SVaclav Hapla DMPlexRestoreSupport() is not needed/available in C. 32373813dfbdSMatthew G Knepley 3238db781477SPatrick Sanan .seealso: `DMPlexGetSupportSize()`, `DMPlexSetSupport()`, `DMPlexGetCone()`, `DMPlexSetChart()` 3239552f7358SJed Brown @*/ 3240552f7358SJed Brown PetscErrorCode DMPlexGetSupport(DM dm, PetscInt p, const PetscInt *support[]) 3241552f7358SJed Brown { 3242552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3243552f7358SJed Brown PetscInt off; 3244552f7358SJed Brown 3245552f7358SJed Brown PetscFunctionBegin; 3246552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3247552f7358SJed Brown PetscValidPointer(support, 3); 32489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, p, &off)); 3249552f7358SJed Brown *support = &mesh->supports[off]; 3250552f7358SJed Brown PetscFunctionReturn(0); 3251552f7358SJed Brown } 3252552f7358SJed Brown 3253552f7358SJed Brown /*@ 325492371b87SBarry Smith DMPlexSetSupport - Set the points on the out-edges for this point in the DAG, that is the list of points that this point covers 3255552f7358SJed Brown 3256552f7358SJed Brown Not collective 3257552f7358SJed Brown 3258552f7358SJed Brown Input Parameters: 3259552f7358SJed Brown + mesh - The DMPlex 3260eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 326192371b87SBarry Smith - support - An array of points which are on the out-edges for point p 3262552f7358SJed Brown 3263552f7358SJed Brown Output Parameter: 3264552f7358SJed Brown 3265552f7358SJed Brown Note: 3266552f7358SJed Brown This should be called after all calls to DMPlexSetSupportSize() and DMSetUp(). 3267552f7358SJed Brown 3268552f7358SJed Brown Level: beginner 3269552f7358SJed Brown 3270db781477SPatrick Sanan .seealso: `DMPlexSetCone()`, `DMPlexSetConeSize()`, `DMPlexCreate()`, `DMPlexGetSupport()`, `DMPlexSetChart()`, `DMPlexSetSupportSize()`, `DMSetUp()` 3271552f7358SJed Brown @*/ 3272552f7358SJed Brown PetscErrorCode DMPlexSetSupport(DM dm, PetscInt p, const PetscInt support[]) 3273552f7358SJed Brown { 3274552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3275552f7358SJed Brown PetscInt pStart, pEnd; 3276552f7358SJed Brown PetscInt dof, off, c; 3277552f7358SJed Brown 3278552f7358SJed Brown PetscFunctionBegin; 3279552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->supportSection, &pStart, &pEnd)); 32819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, p, &dof)); 3282dadcf809SJacob Faibussowitsch if (dof) PetscValidIntPointer(support, 3); 32839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, p, &off)); 328463a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 3285552f7358SJed Brown for (c = 0; c < dof; ++c) { 328663a3b9bcSJacob Faibussowitsch PetscCheck(!(support[c] < pStart) && !(support[c] >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Support point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", support[c], pStart, pEnd); 3287552f7358SJed Brown mesh->supports[off+c] = support[c]; 3288552f7358SJed Brown } 3289552f7358SJed Brown PetscFunctionReturn(0); 3290552f7358SJed Brown } 3291552f7358SJed Brown 32927cd05799SMatthew G. Knepley /*@ 3293eaf898f9SPatrick Sanan DMPlexInsertSupport - Insert a point into the out-edges for the point p in the DAG 32947cd05799SMatthew G. Knepley 32957cd05799SMatthew G. Knepley Not collective 32967cd05799SMatthew G. Knepley 32977cd05799SMatthew G. Knepley Input Parameters: 32987cd05799SMatthew G. Knepley + mesh - The DMPlex 3299eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 33007cd05799SMatthew G. Knepley . supportPos - The local index in the cone where the point should be put 33017cd05799SMatthew G. Knepley - supportPoint - The mesh point to insert 33027cd05799SMatthew G. Knepley 33037cd05799SMatthew G. Knepley Level: beginner 33047cd05799SMatthew G. Knepley 3305db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()` 33067cd05799SMatthew G. Knepley @*/ 3307552f7358SJed Brown PetscErrorCode DMPlexInsertSupport(DM dm, PetscInt p, PetscInt supportPos, PetscInt supportPoint) 3308552f7358SJed Brown { 3309552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3310552f7358SJed Brown PetscInt pStart, pEnd; 3311552f7358SJed Brown PetscInt dof, off; 3312552f7358SJed Brown 3313552f7358SJed Brown PetscFunctionBegin; 3314552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->supportSection, &pStart, &pEnd)); 33169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, p, &dof)); 33179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, p, &off)); 331863a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 331963a3b9bcSJacob Faibussowitsch PetscCheck(!(supportPoint < pStart) && !(supportPoint >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Support point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", supportPoint, pStart, pEnd); 332063a3b9bcSJacob Faibussowitsch PetscCheck(supportPos < dof,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Support position %" PetscInt_FMT " of point %" PetscInt_FMT " is not in the valid range [0, %" PetscInt_FMT ")", supportPos, p, dof); 3321552f7358SJed Brown mesh->supports[off+supportPos] = supportPoint; 3322552f7358SJed Brown PetscFunctionReturn(0); 3323552f7358SJed Brown } 3324552f7358SJed Brown 3325b5a892a1SMatthew G. Knepley /* Converts an orientation o in the current numbering to the previous scheme used in Plex */ 3326b5a892a1SMatthew G. Knepley PetscInt DMPolytopeConvertNewOrientation_Internal(DMPolytopeType ct, PetscInt o) 3327b5a892a1SMatthew G. Knepley { 3328b5a892a1SMatthew G. Knepley switch (ct) { 3329b5a892a1SMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 3330b5a892a1SMatthew G. Knepley if (o == -1) return -2; 3331b5a892a1SMatthew G. Knepley break; 3332b5a892a1SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 3333b5a892a1SMatthew G. Knepley if (o == -3) return -1; 3334b5a892a1SMatthew G. Knepley if (o == -2) return -3; 3335b5a892a1SMatthew G. Knepley if (o == -1) return -2; 3336b5a892a1SMatthew G. Knepley break; 3337b5a892a1SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 3338b5a892a1SMatthew G. Knepley if (o == -4) return -2; 3339b5a892a1SMatthew G. Knepley if (o == -3) return -1; 3340b5a892a1SMatthew G. Knepley if (o == -2) return -4; 3341b5a892a1SMatthew G. Knepley if (o == -1) return -3; 3342b5a892a1SMatthew G. Knepley break; 3343b5a892a1SMatthew G. Knepley default: return o; 3344b5a892a1SMatthew G. Knepley } 3345b5a892a1SMatthew G. Knepley return o; 3346b5a892a1SMatthew G. Knepley } 3347b5a892a1SMatthew G. Knepley 3348b5a892a1SMatthew G. Knepley /* Converts an orientation o in the previous scheme used in Plex to the current numbering */ 3349b5a892a1SMatthew G. Knepley PetscInt DMPolytopeConvertOldOrientation_Internal(DMPolytopeType ct, PetscInt o) 3350b5a892a1SMatthew G. Knepley { 3351b5a892a1SMatthew G. Knepley switch (ct) { 3352b5a892a1SMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 3353b5a892a1SMatthew G. Knepley if ((o == -2) || (o == 1)) return -1; 3354b5a892a1SMatthew G. Knepley if (o == -1) return 0; 3355b5a892a1SMatthew G. Knepley break; 3356b5a892a1SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 3357b5a892a1SMatthew G. Knepley if (o == -3) return -2; 3358b5a892a1SMatthew G. Knepley if (o == -2) return -1; 3359b5a892a1SMatthew G. Knepley if (o == -1) return -3; 3360b5a892a1SMatthew G. Knepley break; 3361b5a892a1SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 3362b5a892a1SMatthew G. Knepley if (o == -4) return -2; 3363b5a892a1SMatthew G. Knepley if (o == -3) return -1; 3364b5a892a1SMatthew G. Knepley if (o == -2) return -4; 3365b5a892a1SMatthew G. Knepley if (o == -1) return -3; 3366b5a892a1SMatthew G. Knepley break; 3367b5a892a1SMatthew G. Knepley default: return o; 3368b5a892a1SMatthew G. Knepley } 3369b5a892a1SMatthew G. Knepley return o; 3370b5a892a1SMatthew G. Knepley } 3371b5a892a1SMatthew G. Knepley 3372b5a892a1SMatthew G. Knepley /* Takes in a mesh whose orientations are in the previous scheme and converts them all to the current numbering */ 3373b5a892a1SMatthew G. Knepley PetscErrorCode DMPlexConvertOldOrientations_Internal(DM dm) 3374b5a892a1SMatthew G. Knepley { 3375b5a892a1SMatthew G. Knepley PetscInt pStart, pEnd, p; 3376b5a892a1SMatthew G. Knepley 3377b5a892a1SMatthew G. Knepley PetscFunctionBegin; 33789566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 3379b5a892a1SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3380b5a892a1SMatthew G. Knepley const PetscInt *cone, *ornt; 3381b5a892a1SMatthew G. Knepley PetscInt coneSize, c; 3382b5a892a1SMatthew G. Knepley 33839566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 33849566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 33859566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &ornt)); 3386b5a892a1SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 3387b5a892a1SMatthew G. Knepley DMPolytopeType ct; 3388b5a892a1SMatthew G. Knepley const PetscInt o = ornt[c]; 3389b5a892a1SMatthew G. Knepley 33909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[c], &ct)); 3391b5a892a1SMatthew G. Knepley switch (ct) { 3392b5a892a1SMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 33939566063dSJacob Faibussowitsch if ((o == -2) || (o == 1)) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -1)); 33949566063dSJacob Faibussowitsch if (o == -1) PetscCall(DMPlexInsertConeOrientation(dm, p, c, 0)); 3395b5a892a1SMatthew G. Knepley break; 3396b5a892a1SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 33979566063dSJacob Faibussowitsch if (o == -3) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -2)); 33989566063dSJacob Faibussowitsch if (o == -2) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -1)); 33999566063dSJacob Faibussowitsch if (o == -1) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -3)); 3400b5a892a1SMatthew G. Knepley break; 3401b5a892a1SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 34029566063dSJacob Faibussowitsch if (o == -4) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -2)); 34039566063dSJacob Faibussowitsch if (o == -3) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -1)); 34049566063dSJacob Faibussowitsch if (o == -2) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -4)); 34059566063dSJacob Faibussowitsch if (o == -1) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -3)); 3406b5a892a1SMatthew G. Knepley break; 3407b5a892a1SMatthew G. Knepley default: break; 3408b5a892a1SMatthew G. Knepley } 3409b5a892a1SMatthew G. Knepley } 3410b5a892a1SMatthew G. Knepley } 3411b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3412b5a892a1SMatthew G. Knepley } 3413b5a892a1SMatthew G. Knepley 3414012bc364SMatthew G. Knepley static PetscErrorCode DMPlexGetTransitiveClosure_Depth1_Private(DM dm, PetscInt p, PetscInt ornt, PetscBool useCone, PetscInt *numPoints, PetscInt *points[]) 3415b5a892a1SMatthew G. Knepley { 3416b5a892a1SMatthew G. Knepley DMPolytopeType ct = DM_POLYTOPE_UNKNOWN; 3417b5a892a1SMatthew G. Knepley PetscInt *closure; 3418b5a892a1SMatthew G. Knepley const PetscInt *tmp = NULL, *tmpO = NULL; 3419b5a892a1SMatthew G. Knepley PetscInt off = 0, tmpSize, t; 3420b5a892a1SMatthew G. Knepley 3421b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 3422b5a892a1SMatthew G. Knepley if (ornt) { 34239566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 3424b5a892a1SMatthew G. Knepley if (ct == DM_POLYTOPE_FV_GHOST || ct == DM_POLYTOPE_INTERIOR_GHOST || ct == DM_POLYTOPE_UNKNOWN) ct = DM_POLYTOPE_UNKNOWN; 3425b5a892a1SMatthew G. Knepley } 3426b5a892a1SMatthew G. Knepley if (*points) { 3427b5a892a1SMatthew G. Knepley closure = *points; 3428b5a892a1SMatthew G. Knepley } else { 3429b5a892a1SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize; 34309566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 34319566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, 2*(PetscMax(maxConeSize, maxSupportSize)+1), MPIU_INT, &closure)); 3432b5a892a1SMatthew G. Knepley } 3433b5a892a1SMatthew G. Knepley if (useCone) { 34349566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &tmpSize)); 34359566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &tmp)); 34369566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &tmpO)); 3437b5a892a1SMatthew G. Knepley } else { 34389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &tmpSize)); 34399566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &tmp)); 3440b5a892a1SMatthew G. Knepley } 3441b5a892a1SMatthew G. Knepley if (ct == DM_POLYTOPE_UNKNOWN) { 3442b5a892a1SMatthew G. Knepley closure[off++] = p; 3443b5a892a1SMatthew G. Knepley closure[off++] = 0; 3444b5a892a1SMatthew G. Knepley for (t = 0; t < tmpSize; ++t) { 3445b5a892a1SMatthew G. Knepley closure[off++] = tmp[t]; 3446b5a892a1SMatthew G. Knepley closure[off++] = tmpO ? tmpO[t] : 0; 3447b5a892a1SMatthew G. Knepley } 3448b5a892a1SMatthew G. Knepley } else { 34495f80ce2aSJacob Faibussowitsch const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, ornt); 3450b5a892a1SMatthew G. Knepley 3451b5a892a1SMatthew G. Knepley /* We assume that cells with a valid type have faces with a valid type */ 3452b5a892a1SMatthew G. Knepley closure[off++] = p; 3453b5a892a1SMatthew G. Knepley closure[off++] = ornt; 3454b5a892a1SMatthew G. Knepley for (t = 0; t < tmpSize; ++t) { 3455b5a892a1SMatthew G. Knepley DMPolytopeType ft; 3456b5a892a1SMatthew G. Knepley 34579566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, tmp[t], &ft)); 3458b5a892a1SMatthew G. Knepley closure[off++] = tmp[arr[t]]; 3459b5a892a1SMatthew G. Knepley closure[off++] = tmpO ? DMPolytopeTypeComposeOrientation(ft, ornt, tmpO[t]) : 0; 3460b5a892a1SMatthew G. Knepley } 3461b5a892a1SMatthew G. Knepley } 3462b5a892a1SMatthew G. Knepley if (numPoints) *numPoints = tmpSize+1; 3463b5a892a1SMatthew G. Knepley if (points) *points = closure; 3464b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3465b5a892a1SMatthew G. Knepley } 3466b5a892a1SMatthew G. Knepley 3467b5a892a1SMatthew G. Knepley /* We need a special tensor verison becasue we want to allow duplicate points in the endcaps for hybrid cells */ 3468b5a892a1SMatthew G. Knepley static PetscErrorCode DMPlexTransitiveClosure_Tensor_Internal(DM dm, PetscInt point, DMPolytopeType ct, PetscInt o, PetscBool useCone, PetscInt *numPoints, PetscInt **points) 3469b5a892a1SMatthew G. Knepley { 3470b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, o); 3471b5a892a1SMatthew G. Knepley const PetscInt *cone, *ornt; 3472b5a892a1SMatthew G. Knepley PetscInt *pts, *closure = NULL; 3473b5a892a1SMatthew G. Knepley DMPolytopeType ft; 3474b5a892a1SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize, coneSeries, supportSeries, maxSize; 3475b5a892a1SMatthew G. Knepley PetscInt dim, coneSize, c, d, clSize, cl; 3476b5a892a1SMatthew G. Knepley 3477b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 34789566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 34799566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 34809566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 34819566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 34829566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 3483b5a892a1SMatthew G. Knepley coneSeries = (maxConeSize > 1) ? ((PetscPowInt(maxConeSize, dim+1)-1)/(maxConeSize-1)) : dim+1; 3484b5a892a1SMatthew G. Knepley supportSeries = (maxSupportSize > 1) ? ((PetscPowInt(maxSupportSize, dim+1)-1)/(maxSupportSize-1)) : dim+1; 3485b5a892a1SMatthew G. Knepley maxSize = PetscMax(coneSeries, supportSeries); 3486b5a892a1SMatthew G. Knepley if (*points) {pts = *points;} 34879566063dSJacob Faibussowitsch else PetscCall(DMGetWorkArray(dm, 2*maxSize, MPIU_INT, &pts)); 3488b5a892a1SMatthew G. Knepley c = 0; 3489b5a892a1SMatthew G. Knepley pts[c++] = point; 3490b5a892a1SMatthew G. Knepley pts[c++] = o; 34919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[arr[0*2+0]], &ft)); 34929566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Internal(dm, cone[arr[0*2+0]], DMPolytopeTypeComposeOrientation(ft, arr[0*2+1], ornt[0]), useCone, &clSize, &closure)); 3493b5a892a1SMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) {pts[c++] = closure[cl]; pts[c++] = closure[cl+1];} 34949566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Internal(dm, cone[arr[1*2+0]], DMPolytopeTypeComposeOrientation(ft, arr[1*2+1], ornt[1]), useCone, &clSize, &closure)); 3495b5a892a1SMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) {pts[c++] = closure[cl]; pts[c++] = closure[cl+1];} 34969566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], useCone, &clSize, &closure)); 3497b5a892a1SMatthew G. Knepley for (d = 2; d < coneSize; ++d) { 34989566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[arr[d*2+0]], &ft)); 3499b5a892a1SMatthew G. Knepley pts[c++] = cone[arr[d*2+0]]; 3500b5a892a1SMatthew G. Knepley pts[c++] = DMPolytopeTypeComposeOrientation(ft, arr[d*2+1], ornt[d]); 3501b5a892a1SMatthew G. Knepley } 3502b5a892a1SMatthew G. Knepley if (dim >= 3) { 3503b5a892a1SMatthew G. Knepley for (d = 2; d < coneSize; ++d) { 3504b5a892a1SMatthew G. Knepley const PetscInt fpoint = cone[arr[d*2+0]]; 3505b5a892a1SMatthew G. Knepley const PetscInt *fcone, *fornt; 3506b5a892a1SMatthew G. Knepley PetscInt fconeSize, fc, i; 3507b5a892a1SMatthew G. Knepley 35089566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, fpoint, &ft)); 3509b5a892a1SMatthew G. Knepley const PetscInt *farr = DMPolytopeTypeGetArrangment(ft, DMPolytopeTypeComposeOrientation(ft, arr[d*2+1], ornt[d])); 35109566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, fpoint, &fconeSize)); 35119566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, fpoint, &fcone)); 35129566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, fpoint, &fornt)); 3513b5a892a1SMatthew G. Knepley for (fc = 0; fc < fconeSize; ++fc) { 3514b5a892a1SMatthew G. Knepley const PetscInt cp = fcone[farr[fc*2+0]]; 3515b5a892a1SMatthew G. Knepley const PetscInt co = farr[fc*2+1]; 3516b5a892a1SMatthew G. Knepley 3517b5a892a1SMatthew G. Knepley for (i = 0; i < c; i += 2) if (pts[i] == cp) break; 3518b5a892a1SMatthew G. Knepley if (i == c) { 35199566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cp, &ft)); 3520b5a892a1SMatthew G. Knepley pts[c++] = cp; 3521b5a892a1SMatthew G. Knepley pts[c++] = DMPolytopeTypeComposeOrientation(ft, co, fornt[farr[fc*2+0]]); 3522b5a892a1SMatthew G. Knepley } 3523b5a892a1SMatthew G. Knepley } 3524b5a892a1SMatthew G. Knepley } 3525b5a892a1SMatthew G. Knepley } 3526b5a892a1SMatthew G. Knepley *numPoints = c/2; 3527b5a892a1SMatthew G. Knepley *points = pts; 3528b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3529b5a892a1SMatthew G. Knepley } 3530b5a892a1SMatthew G. Knepley 3531b5a892a1SMatthew G. Knepley PetscErrorCode DMPlexGetTransitiveClosure_Internal(DM dm, PetscInt p, PetscInt ornt, PetscBool useCone, PetscInt *numPoints, PetscInt *points[]) 3532b5a892a1SMatthew G. Knepley { 3533b5a892a1SMatthew G. Knepley DMPolytopeType ct; 3534b5a892a1SMatthew G. Knepley PetscInt *closure, *fifo; 3535b5a892a1SMatthew G. Knepley PetscInt closureSize = 0, fifoStart = 0, fifoSize = 0; 3536b5a892a1SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize, coneSeries, supportSeries; 3537b5a892a1SMatthew G. Knepley PetscInt depth, maxSize; 3538b5a892a1SMatthew G. Knepley 3539b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 35409566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 3541b5a892a1SMatthew G. Knepley if (depth == 1) { 35429566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Depth1_Private(dm, p, ornt, useCone, numPoints, points)); 3543b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3544b5a892a1SMatthew G. Knepley } 35459566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 3546b5a892a1SMatthew G. Knepley if (ct == DM_POLYTOPE_FV_GHOST || ct == DM_POLYTOPE_INTERIOR_GHOST || ct == DM_POLYTOPE_UNKNOWN) ct = DM_POLYTOPE_UNKNOWN; 3547b5a892a1SMatthew G. Knepley if (ct == DM_POLYTOPE_SEG_PRISM_TENSOR || ct == DM_POLYTOPE_TRI_PRISM_TENSOR || ct == DM_POLYTOPE_QUAD_PRISM_TENSOR) { 35489566063dSJacob Faibussowitsch PetscCall(DMPlexTransitiveClosure_Tensor_Internal(dm, p, ct, ornt, useCone, numPoints, points)); 3549b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3550b5a892a1SMatthew G. Knepley } 35519566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 3552b5a892a1SMatthew G. Knepley coneSeries = (maxConeSize > 1) ? ((PetscPowInt(maxConeSize, depth+1)-1)/(maxConeSize-1)) : depth+1; 3553b5a892a1SMatthew G. Knepley supportSeries = (maxSupportSize > 1) ? ((PetscPowInt(maxSupportSize, depth+1)-1)/(maxSupportSize-1)) : depth+1; 3554b5a892a1SMatthew G. Knepley maxSize = PetscMax(coneSeries, supportSeries); 35559566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, 3*maxSize, MPIU_INT, &fifo)); 3556b5a892a1SMatthew G. Knepley if (*points) {closure = *points;} 35579566063dSJacob Faibussowitsch else PetscCall(DMGetWorkArray(dm, 2*maxSize, MPIU_INT, &closure)); 3558b5a892a1SMatthew G. Knepley closure[closureSize++] = p; 3559b5a892a1SMatthew G. Knepley closure[closureSize++] = ornt; 3560b5a892a1SMatthew G. Knepley fifo[fifoSize++] = p; 3561b5a892a1SMatthew G. Knepley fifo[fifoSize++] = ornt; 3562b5a892a1SMatthew G. Knepley fifo[fifoSize++] = ct; 3563b5a892a1SMatthew G. Knepley /* Should kick out early when depth is reached, rather than checking all vertices for empty cones */ 3564b5a892a1SMatthew G. Knepley while (fifoSize - fifoStart) { 3565b5a892a1SMatthew G. Knepley const PetscInt q = fifo[fifoStart++]; 3566b5a892a1SMatthew G. Knepley const PetscInt o = fifo[fifoStart++]; 3567b5a892a1SMatthew G. Knepley const DMPolytopeType qt = (DMPolytopeType) fifo[fifoStart++]; 3568b5a892a1SMatthew G. Knepley const PetscInt *qarr = DMPolytopeTypeGetArrangment(qt, o); 3569b5a892a1SMatthew G. Knepley const PetscInt *tmp, *tmpO; 3570b5a892a1SMatthew G. Knepley PetscInt tmpSize, t; 3571b5a892a1SMatthew G. Knepley 3572b5a892a1SMatthew G. Knepley if (PetscDefined(USE_DEBUG)) { 3573b5a892a1SMatthew G. Knepley PetscInt nO = DMPolytopeTypeGetNumArrangments(qt)/2; 357463a3b9bcSJacob Faibussowitsch PetscCheck(!o || !(o >= nO || o < -nO),PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid orientation %" PetscInt_FMT " not in [%" PetscInt_FMT ",%" PetscInt_FMT ") for %s %" PetscInt_FMT, o, -nO, nO, DMPolytopeTypes[qt], q); 3575b5a892a1SMatthew G. Knepley } 3576b5a892a1SMatthew G. Knepley if (useCone) { 35779566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, q, &tmpSize)); 35789566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, q, &tmp)); 35799566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, q, &tmpO)); 3580b5a892a1SMatthew G. Knepley } else { 35819566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, q, &tmpSize)); 35829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, q, &tmp)); 3583b5a892a1SMatthew G. Knepley tmpO = NULL; 3584b5a892a1SMatthew G. Knepley } 3585b5a892a1SMatthew G. Knepley for (t = 0; t < tmpSize; ++t) { 3586b5a892a1SMatthew G. Knepley const PetscInt ip = useCone && qarr ? qarr[t*2] : t; 3587b5a892a1SMatthew G. Knepley const PetscInt io = useCone && qarr ? qarr[t*2+1] : 0; 3588b5a892a1SMatthew G. Knepley const PetscInt cp = tmp[ip]; 35899566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cp, &ct)); 3590b5a892a1SMatthew G. Knepley const PetscInt co = tmpO ? DMPolytopeTypeComposeOrientation(ct, io, tmpO[ip]) : 0; 3591b5a892a1SMatthew G. Knepley PetscInt c; 3592b5a892a1SMatthew G. Knepley 3593b5a892a1SMatthew G. Knepley /* Check for duplicate */ 3594b5a892a1SMatthew G. Knepley for (c = 0; c < closureSize; c += 2) { 3595b5a892a1SMatthew G. Knepley if (closure[c] == cp) break; 3596b5a892a1SMatthew G. Knepley } 3597b5a892a1SMatthew G. Knepley if (c == closureSize) { 3598b5a892a1SMatthew G. Knepley closure[closureSize++] = cp; 3599b5a892a1SMatthew G. Knepley closure[closureSize++] = co; 3600b5a892a1SMatthew G. Knepley fifo[fifoSize++] = cp; 3601b5a892a1SMatthew G. Knepley fifo[fifoSize++] = co; 3602b5a892a1SMatthew G. Knepley fifo[fifoSize++] = ct; 3603b5a892a1SMatthew G. Knepley } 3604b5a892a1SMatthew G. Knepley } 3605b5a892a1SMatthew G. Knepley } 36069566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 3*maxSize, MPIU_INT, &fifo)); 3607b5a892a1SMatthew G. Knepley if (numPoints) *numPoints = closureSize/2; 3608b5a892a1SMatthew G. Knepley if (points) *points = closure; 3609b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3610b5a892a1SMatthew G. Knepley } 3611b5a892a1SMatthew G. Knepley 3612552f7358SJed Brown /*@C 3613eaf898f9SPatrick Sanan DMPlexGetTransitiveClosure - Return the points on the transitive closure of the in-edges or out-edges for this point in the DAG 3614552f7358SJed Brown 3615552f7358SJed Brown Not collective 3616552f7358SJed Brown 3617552f7358SJed Brown Input Parameters: 3618b5a892a1SMatthew G. Knepley + dm - The DMPlex 3619b5a892a1SMatthew G. Knepley . p - The mesh point 36206b867d5aSJose E. Roman - useCone - PETSC_TRUE for the closure, otherwise return the star 3621552f7358SJed Brown 36226b867d5aSJose E. Roman Input/Output Parameter: 36236b867d5aSJose E. Roman . points - The points and point orientations, interleaved as pairs [p0, o0, p1, o1, ...]; 36246b867d5aSJose E. Roman if NULL on input, internal storage will be returned, otherwise the provided array is used 36256b867d5aSJose E. Roman 36266b867d5aSJose E. Roman Output Parameter: 36276b867d5aSJose E. Roman . numPoints - The number of points in the closure, so points[] is of size 2*numPoints 3628552f7358SJed Brown 3629552f7358SJed Brown Note: 36300298fd71SBarry Smith If using internal storage (points is NULL on input), each call overwrites the last output. 3631552f7358SJed Brown 36323813dfbdSMatthew G Knepley Fortran Notes: 3633b5a892a1SMatthew G. Knepley Since it returns an array, this routine is only available in Fortran 90, and you must include petsc.h90 in your code. 36343813dfbdSMatthew G Knepley 36353813dfbdSMatthew G Knepley The numPoints argument is not present in the Fortran 90 binding since it is internal to the array. 36363813dfbdSMatthew G Knepley 3637552f7358SJed Brown Level: beginner 3638552f7358SJed Brown 3639db781477SPatrick Sanan .seealso: `DMPlexRestoreTransitiveClosure()`, `DMPlexCreate()`, `DMPlexSetCone()`, `DMPlexSetChart()`, `DMPlexGetCone()` 3640552f7358SJed Brown @*/ 3641552f7358SJed Brown PetscErrorCode DMPlexGetTransitiveClosure(DM dm, PetscInt p, PetscBool useCone, PetscInt *numPoints, PetscInt *points[]) 3642552f7358SJed Brown { 3643b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 3644552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3645b5a892a1SMatthew G. Knepley if (numPoints) PetscValidIntPointer(numPoints, 4); 3646b5a892a1SMatthew G. Knepley if (points) PetscValidPointer(points, 5); 36479566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Internal(dm, p, 0, useCone, numPoints, points)); 36489bf0dad6SMatthew G. Knepley PetscFunctionReturn(0); 36499bf0dad6SMatthew G. Knepley } 36509bf0dad6SMatthew G. Knepley 3651552f7358SJed Brown /*@C 3652eaf898f9SPatrick Sanan DMPlexRestoreTransitiveClosure - Restore the array of points on the transitive closure of the in-edges or out-edges for this point in the DAG 3653552f7358SJed Brown 3654552f7358SJed Brown Not collective 3655552f7358SJed Brown 3656552f7358SJed Brown Input Parameters: 3657b5a892a1SMatthew G. Knepley + dm - The DMPlex 3658b5a892a1SMatthew G. Knepley . p - The mesh point 3659b5a892a1SMatthew G. Knepley . useCone - PETSC_TRUE for the closure, otherwise return the star 3660b5a892a1SMatthew G. Knepley . numPoints - The number of points in the closure, so points[] is of size 2*numPoints 3661b5a892a1SMatthew G. Knepley - points - The points and point orientations, interleaved as pairs [p0, o0, p1, o1, ...] 3662552f7358SJed Brown 3663552f7358SJed Brown Note: 36640298fd71SBarry Smith If not using internal storage (points is not NULL on input), this call is unnecessary 3665552f7358SJed Brown 36663813dfbdSMatthew G Knepley Fortran Notes: 3667b5a892a1SMatthew G. Knepley Since it returns an array, this routine is only available in Fortran 90, and you must include petsc.h90 in your code. 36683813dfbdSMatthew G Knepley 36693813dfbdSMatthew G Knepley The numPoints argument is not present in the Fortran 90 binding since it is internal to the array. 36703813dfbdSMatthew G Knepley 3671552f7358SJed Brown Level: beginner 3672552f7358SJed Brown 3673db781477SPatrick Sanan .seealso: `DMPlexGetTransitiveClosure()`, `DMPlexCreate()`, `DMPlexSetCone()`, `DMPlexSetChart()`, `DMPlexGetCone()` 3674552f7358SJed Brown @*/ 3675552f7358SJed Brown PetscErrorCode DMPlexRestoreTransitiveClosure(DM dm, PetscInt p, PetscBool useCone, PetscInt *numPoints, PetscInt *points[]) 3676552f7358SJed Brown { 3677b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 3678552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36794ff43b2cSJed Brown if (numPoints) *numPoints = 0; 36809566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_INT, points)); 3681552f7358SJed Brown PetscFunctionReturn(0); 3682552f7358SJed Brown } 3683552f7358SJed Brown 3684552f7358SJed Brown /*@ 3685eaf898f9SPatrick Sanan DMPlexGetMaxSizes - Return the maximum number of in-edges (cone) and out-edges (support) for any point in the DAG 3686552f7358SJed Brown 3687552f7358SJed Brown Not collective 3688552f7358SJed Brown 3689552f7358SJed Brown Input Parameter: 3690552f7358SJed Brown . mesh - The DMPlex 3691552f7358SJed Brown 3692552f7358SJed Brown Output Parameters: 3693552f7358SJed Brown + maxConeSize - The maximum number of in-edges 3694552f7358SJed Brown - maxSupportSize - The maximum number of out-edges 3695552f7358SJed Brown 3696552f7358SJed Brown Level: beginner 3697552f7358SJed Brown 3698db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetConeSize()`, `DMPlexSetChart()` 3699552f7358SJed Brown @*/ 3700552f7358SJed Brown PetscErrorCode DMPlexGetMaxSizes(DM dm, PetscInt *maxConeSize, PetscInt *maxSupportSize) 3701552f7358SJed Brown { 3702552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3703552f7358SJed Brown 3704552f7358SJed Brown PetscFunctionBegin; 3705552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37066302a7fbSVaclav Hapla if (maxConeSize) { 37076302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->coneSection, maxConeSize)); 37086302a7fbSVaclav Hapla } 37096302a7fbSVaclav Hapla if (maxSupportSize) { 37106302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->supportSection, maxSupportSize)); 37116302a7fbSVaclav Hapla } 3712552f7358SJed Brown PetscFunctionReturn(0); 3713552f7358SJed Brown } 3714552f7358SJed Brown 3715552f7358SJed Brown PetscErrorCode DMSetUp_Plex(DM dm) 3716552f7358SJed Brown { 3717552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 37186302a7fbSVaclav Hapla PetscInt size, maxSupportSize; 3719552f7358SJed Brown 3720552f7358SJed Brown PetscFunctionBegin; 3721552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37229566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(mesh->coneSection)); 37239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(mesh->coneSection, &size)); 37249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &mesh->cones)); 37259566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &mesh->coneOrientations)); 37269566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject) dm, size*2*sizeof(PetscInt))); 37276302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->supportSection, &maxSupportSize)); 37286302a7fbSVaclav Hapla if (maxSupportSize) { 37299566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(mesh->supportSection)); 37309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(mesh->supportSection, &size)); 37319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &mesh->supports)); 37329566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject) dm, size*sizeof(PetscInt))); 3733552f7358SJed Brown } 3734552f7358SJed Brown PetscFunctionReturn(0); 3735552f7358SJed Brown } 3736552f7358SJed Brown 3737276c5506SMatthew G. Knepley PetscErrorCode DMCreateSubDM_Plex(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 3738552f7358SJed Brown { 3739552f7358SJed Brown PetscFunctionBegin; 37409566063dSJacob Faibussowitsch if (subdm) PetscCall(DMClone(dm, subdm)); 37419566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSubDM(dm, numFields, fields, is, subdm)); 3742c2939958SSatish Balay if (subdm) {(*subdm)->useNatural = dm->useNatural;} 3743736995cdSBlaise Bourdin if (dm->useNatural && dm->sfMigration) { 3744f94b4a02SBlaise Bourdin PetscSF sfMigrationInv,sfNatural; 3745f94b4a02SBlaise Bourdin PetscSection section, sectionSeq; 3746f94b4a02SBlaise Bourdin 37473dcd263cSBlaise Bourdin (*subdm)->sfMigration = dm->sfMigration; 37489566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dm->sfMigration)); 37499566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection((*subdm), §ion)); 37509566063dSJacob Faibussowitsch PetscCall(PetscSFCreateInverseSF((*subdm)->sfMigration, &sfMigrationInv)); 37519566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject) (*subdm)), §ionSeq)); 37529566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(sfMigrationInv, section, NULL, sectionSeq)); 3753f94b4a02SBlaise Bourdin 37549566063dSJacob Faibussowitsch PetscCall(DMPlexCreateGlobalToNaturalSF(*subdm, sectionSeq, (*subdm)->sfMigration, &sfNatural)); 3755c40e9495SBlaise Bourdin (*subdm)->sfNatural = sfNatural; 37569566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ionSeq)); 37579566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigrationInv)); 3758f94b4a02SBlaise Bourdin } 3759552f7358SJed Brown PetscFunctionReturn(0); 3760552f7358SJed Brown } 3761552f7358SJed Brown 37622adcc780SMatthew G. Knepley PetscErrorCode DMCreateSuperDM_Plex(DM dms[], PetscInt len, IS **is, DM *superdm) 37632adcc780SMatthew G. Knepley { 37643dcd263cSBlaise Bourdin PetscInt i = 0; 37652adcc780SMatthew G. Knepley 37662adcc780SMatthew G. Knepley PetscFunctionBegin; 37679566063dSJacob Faibussowitsch PetscCall(DMClone(dms[0], superdm)); 37689566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSuperDM(dms, len, is, superdm)); 3769c40e9495SBlaise Bourdin (*superdm)->useNatural = PETSC_FALSE; 37703dcd263cSBlaise Bourdin for (i = 0; i < len; i++) { 37713dcd263cSBlaise Bourdin if (dms[i]->useNatural && dms[i]->sfMigration) { 37723dcd263cSBlaise Bourdin PetscSF sfMigrationInv,sfNatural; 37733dcd263cSBlaise Bourdin PetscSection section, sectionSeq; 37743dcd263cSBlaise Bourdin 37753dcd263cSBlaise Bourdin (*superdm)->sfMigration = dms[i]->sfMigration; 37769566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dms[i]->sfMigration)); 3777c40e9495SBlaise Bourdin (*superdm)->useNatural = PETSC_TRUE; 37789566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection((*superdm), §ion)); 37799566063dSJacob Faibussowitsch PetscCall(PetscSFCreateInverseSF((*superdm)->sfMigration, &sfMigrationInv)); 37809566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject) (*superdm)), §ionSeq)); 37819566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(sfMigrationInv, section, NULL, sectionSeq)); 37823dcd263cSBlaise Bourdin 37839566063dSJacob Faibussowitsch PetscCall(DMPlexCreateGlobalToNaturalSF(*superdm, sectionSeq, (*superdm)->sfMigration, &sfNatural)); 3784c40e9495SBlaise Bourdin (*superdm)->sfNatural = sfNatural; 37859566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ionSeq)); 37869566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigrationInv)); 37873dcd263cSBlaise Bourdin break; 37883dcd263cSBlaise Bourdin } 37893dcd263cSBlaise Bourdin } 37902adcc780SMatthew G. Knepley PetscFunctionReturn(0); 37912adcc780SMatthew G. Knepley } 37922adcc780SMatthew G. Knepley 3793552f7358SJed Brown /*@ 3794eaf898f9SPatrick Sanan DMPlexSymmetrize - Create support (out-edge) information from cone (in-edge) information 3795552f7358SJed Brown 3796552f7358SJed Brown Not collective 3797552f7358SJed Brown 3798552f7358SJed Brown Input Parameter: 3799552f7358SJed Brown . mesh - The DMPlex 3800552f7358SJed Brown 3801552f7358SJed Brown Output Parameter: 3802552f7358SJed Brown 3803552f7358SJed Brown Note: 3804552f7358SJed Brown This should be called after all calls to DMPlexSetCone() 3805552f7358SJed Brown 3806552f7358SJed Brown Level: beginner 3807552f7358SJed Brown 3808db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMPlexSetCone()` 3809552f7358SJed Brown @*/ 3810552f7358SJed Brown PetscErrorCode DMPlexSymmetrize(DM dm) 3811552f7358SJed Brown { 3812552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3813552f7358SJed Brown PetscInt *offsets; 3814552f7358SJed Brown PetscInt supportSize; 3815552f7358SJed Brown PetscInt pStart, pEnd, p; 3816552f7358SJed Brown 3817552f7358SJed Brown PetscFunctionBegin; 3818552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 381928b400f6SJacob Faibussowitsch PetscCheck(!mesh->supports,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Supports were already setup in this DMPlex"); 38209566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Symmetrize,dm,0,0,0)); 3821552f7358SJed Brown /* Calculate support sizes */ 38229566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 3823552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 3824552f7358SJed Brown PetscInt dof, off, c; 3825552f7358SJed Brown 38269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 38279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 3828552f7358SJed Brown for (c = off; c < off+dof; ++c) { 38299566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(mesh->supportSection, mesh->cones[c], 1)); 3830552f7358SJed Brown } 3831552f7358SJed Brown } 38329566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(mesh->supportSection)); 3833552f7358SJed Brown /* Calculate supports */ 38349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(mesh->supportSection, &supportSize)); 38359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(supportSize, &mesh->supports)); 38369566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pEnd - pStart, &offsets)); 3837552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 3838552f7358SJed Brown PetscInt dof, off, c; 3839552f7358SJed Brown 38409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 38419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 3842552f7358SJed Brown for (c = off; c < off+dof; ++c) { 3843552f7358SJed Brown const PetscInt q = mesh->cones[c]; 3844552f7358SJed Brown PetscInt offS; 3845552f7358SJed Brown 38469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, q, &offS)); 38470d644c17SKarl Rupp 3848552f7358SJed Brown mesh->supports[offS+offsets[q]] = p; 3849552f7358SJed Brown ++offsets[q]; 3850552f7358SJed Brown } 3851552f7358SJed Brown } 38529566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 38539566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Symmetrize,dm,0,0,0)); 3854552f7358SJed Brown PetscFunctionReturn(0); 3855552f7358SJed Brown } 3856552f7358SJed Brown 3857277ea44aSLisandro Dalcin static PetscErrorCode DMPlexCreateDepthStratum(DM dm, DMLabel label, PetscInt depth, PetscInt pStart, PetscInt pEnd) 3858277ea44aSLisandro Dalcin { 3859277ea44aSLisandro Dalcin IS stratumIS; 3860277ea44aSLisandro Dalcin 3861277ea44aSLisandro Dalcin PetscFunctionBegin; 3862277ea44aSLisandro Dalcin if (pStart >= pEnd) PetscFunctionReturn(0); 386376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 3864277ea44aSLisandro Dalcin PetscInt qStart, qEnd, numLevels, level; 3865277ea44aSLisandro Dalcin PetscBool overlap = PETSC_FALSE; 38669566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numLevels)); 3867277ea44aSLisandro Dalcin for (level = 0; level < numLevels; level++) { 38689566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(label, level, &qStart, &qEnd)); 3869277ea44aSLisandro Dalcin if ((pStart >= qStart && pStart < qEnd) || (pEnd > qStart && pEnd <= qEnd)) {overlap = PETSC_TRUE; break;} 3870277ea44aSLisandro Dalcin } 387163a3b9bcSJacob Faibussowitsch PetscCheck(!overlap,PETSC_COMM_SELF, PETSC_ERR_PLIB, "New depth %" PetscInt_FMT " range [%" PetscInt_FMT ",%" PetscInt_FMT ") overlaps with depth %" PetscInt_FMT " range [%" PetscInt_FMT ",%" PetscInt_FMT ")", depth, pStart, pEnd, level, qStart, qEnd); 3872277ea44aSLisandro Dalcin } 38739566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEnd-pStart, pStart, 1, &stratumIS)); 38749566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, depth, stratumIS)); 38759566063dSJacob Faibussowitsch PetscCall(ISDestroy(&stratumIS)); 3876277ea44aSLisandro Dalcin PetscFunctionReturn(0); 3877277ea44aSLisandro Dalcin } 3878277ea44aSLisandro Dalcin 3879552f7358SJed Brown /*@ 3880a8d69d7bSBarry Smith DMPlexStratify - The DAG for most topologies is a graded poset (https://en.wikipedia.org/wiki/Graded_poset), and 38816dd80730SBarry Smith can be illustrated by a Hasse Diagram (https://en.wikipedia.org/wiki/Hasse_diagram). The strata group all points of the 3882552f7358SJed Brown same grade, and this function calculates the strata. This grade can be seen as the height (or depth) of the point in 3883552f7358SJed Brown the DAG. 3884552f7358SJed Brown 3885bf4602e4SToby Isaac Collective on dm 3886552f7358SJed Brown 3887552f7358SJed Brown Input Parameter: 3888552f7358SJed Brown . mesh - The DMPlex 3889552f7358SJed Brown 3890552f7358SJed Brown Output Parameter: 3891552f7358SJed Brown 3892552f7358SJed Brown Notes: 3893b1bb481bSMatthew Knepley Concretely, DMPlexStratify() creates a new label named "depth" containing the depth in the DAG of each point. For cell-vertex 3894b1bb481bSMatthew Knepley meshes, vertices are depth 0 and cells are depth 1. For fully interpolated meshes, depth 0 for vertices, 1 for edges, and so on 3895b1bb481bSMatthew Knepley until cells have depth equal to the dimension of the mesh. The depth label can be accessed through DMPlexGetDepthLabel() or DMPlexGetDepthStratum(), or 3896c58f1c22SToby Isaac manually via DMGetLabel(). The height is defined implicitly by height = maxDimension - depth, and can be accessed 3897150b719bSJed Brown via DMPlexGetHeightStratum(). For example, cells have height 0 and faces have height 1. 3898552f7358SJed Brown 3899b1bb481bSMatthew Knepley The depth of a point is calculated by executing a breadth-first search (BFS) on the DAG. This could produce surprising results 3900b1bb481bSMatthew Knepley if run on a partially interpolated mesh, meaning one that had some edges and faces, but not others. For example, suppose that 3901b1bb481bSMatthew Knepley we had a mesh consisting of one triangle (c0) and three vertices (v0, v1, v2), and only one edge is on the boundary so we choose 3902b1bb481bSMatthew Knepley to interpolate only that one (e0), so that 3903b1bb481bSMatthew Knepley $ cone(c0) = {e0, v2} 3904b1bb481bSMatthew Knepley $ cone(e0) = {v0, v1} 3905b1bb481bSMatthew Knepley If DMPlexStratify() is run on this mesh, it will give depths 3906b1bb481bSMatthew Knepley $ depth 0 = {v0, v1, v2} 3907b1bb481bSMatthew Knepley $ depth 1 = {e0, c0} 3908b1bb481bSMatthew Knepley where the triangle has been given depth 1, instead of 2, because it is reachable from vertex v2. 3909b1bb481bSMatthew Knepley 3910150b719bSJed Brown DMPlexStratify() should be called after all calls to DMPlexSymmetrize() 3911552f7358SJed Brown 3912552f7358SJed Brown Level: beginner 3913552f7358SJed Brown 3914db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSymmetrize()`, `DMPlexComputeCellTypes()` 3915552f7358SJed Brown @*/ 3916552f7358SJed Brown PetscErrorCode DMPlexStratify(DM dm) 3917552f7358SJed Brown { 3918df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 3919aa50250dSMatthew G. Knepley DMLabel label; 3920552f7358SJed Brown PetscInt pStart, pEnd, p; 3921552f7358SJed Brown PetscInt numRoots = 0, numLeaves = 0; 3922552f7358SJed Brown 3923552f7358SJed Brown PetscFunctionBegin; 3924552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39259566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Stratify,dm,0,0,0)); 3926277ea44aSLisandro Dalcin 3927277ea44aSLisandro Dalcin /* Create depth label */ 39289566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 39299566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, "depth")); 39309566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 3931277ea44aSLisandro Dalcin 3932277ea44aSLisandro Dalcin { 3933552f7358SJed Brown /* Initialize roots and count leaves */ 3934277ea44aSLisandro Dalcin PetscInt sMin = PETSC_MAX_INT; 3935277ea44aSLisandro Dalcin PetscInt sMax = PETSC_MIN_INT; 3936552f7358SJed Brown PetscInt coneSize, supportSize; 3937552f7358SJed Brown 3938277ea44aSLisandro Dalcin for (p = pStart; p < pEnd; ++p) { 39399566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 39409566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 3941552f7358SJed Brown if (!coneSize && supportSize) { 3942277ea44aSLisandro Dalcin sMin = PetscMin(p, sMin); 3943277ea44aSLisandro Dalcin sMax = PetscMax(p, sMax); 3944552f7358SJed Brown ++numRoots; 3945552f7358SJed Brown } else if (!supportSize && coneSize) { 3946552f7358SJed Brown ++numLeaves; 3947552f7358SJed Brown } else if (!supportSize && !coneSize) { 3948552f7358SJed Brown /* Isolated points */ 3949277ea44aSLisandro Dalcin sMin = PetscMin(p, sMin); 3950277ea44aSLisandro Dalcin sMax = PetscMax(p, sMax); 3951552f7358SJed Brown } 3952552f7358SJed Brown } 39539566063dSJacob Faibussowitsch PetscCall(DMPlexCreateDepthStratum(dm, label, 0, sMin, sMax+1)); 3954277ea44aSLisandro Dalcin } 3955277ea44aSLisandro Dalcin 3956552f7358SJed Brown if (numRoots + numLeaves == (pEnd - pStart)) { 3957277ea44aSLisandro Dalcin PetscInt sMin = PETSC_MAX_INT; 3958277ea44aSLisandro Dalcin PetscInt sMax = PETSC_MIN_INT; 3959552f7358SJed Brown PetscInt coneSize, supportSize; 3960552f7358SJed Brown 3961277ea44aSLisandro Dalcin for (p = pStart; p < pEnd; ++p) { 39629566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 39639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 3964552f7358SJed Brown if (!supportSize && coneSize) { 3965277ea44aSLisandro Dalcin sMin = PetscMin(p, sMin); 3966277ea44aSLisandro Dalcin sMax = PetscMax(p, sMax); 3967552f7358SJed Brown } 3968552f7358SJed Brown } 39699566063dSJacob Faibussowitsch PetscCall(DMPlexCreateDepthStratum(dm, label, 1, sMin, sMax+1)); 3970552f7358SJed Brown } else { 3971277ea44aSLisandro Dalcin PetscInt level = 0; 3972277ea44aSLisandro Dalcin PetscInt qStart, qEnd, q; 3973552f7358SJed Brown 39749566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(label, level, &qStart, &qEnd)); 3975277ea44aSLisandro Dalcin while (qEnd > qStart) { 3976277ea44aSLisandro Dalcin PetscInt sMin = PETSC_MAX_INT; 3977277ea44aSLisandro Dalcin PetscInt sMax = PETSC_MIN_INT; 397874ef644bSMatthew G. Knepley 3979277ea44aSLisandro Dalcin for (q = qStart; q < qEnd; ++q) { 398074ef644bSMatthew G. Knepley const PetscInt *support; 398174ef644bSMatthew G. Knepley PetscInt supportSize, s; 398274ef644bSMatthew G. Knepley 39839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, q, &supportSize)); 39849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, q, &support)); 398574ef644bSMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3986277ea44aSLisandro Dalcin sMin = PetscMin(support[s], sMin); 3987277ea44aSLisandro Dalcin sMax = PetscMax(support[s], sMax); 3988552f7358SJed Brown } 3989552f7358SJed Brown } 39909566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &level)); 39919566063dSJacob Faibussowitsch PetscCall(DMPlexCreateDepthStratum(dm, label, level, sMin, sMax+1)); 39929566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(label, level, &qStart, &qEnd)); 399374ef644bSMatthew G. Knepley } 399474ef644bSMatthew G. Knepley } 3995bf4602e4SToby Isaac { /* just in case there is an empty process */ 3996bf4602e4SToby Isaac PetscInt numValues, maxValues = 0, v; 3997bf4602e4SToby Isaac 39989566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 39999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&numValues,&maxValues,1,MPIU_INT,MPI_MAX,PetscObjectComm((PetscObject)dm))); 4000bf4602e4SToby Isaac for (v = numValues; v < maxValues; v++) { 40019566063dSJacob Faibussowitsch PetscCall(DMLabelAddStratum(label, v)); 4002bf4602e4SToby Isaac } 4003bf4602e4SToby Isaac } 40049566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) label, &mesh->depthState)); 40059566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Stratify,dm,0,0,0)); 4006552f7358SJed Brown PetscFunctionReturn(0); 4007552f7358SJed Brown } 4008552f7358SJed Brown 4009412e9a14SMatthew G. Knepley PetscErrorCode DMPlexComputeCellType_Internal(DM dm, PetscInt p, PetscInt pdepth, DMPolytopeType *pt) 4010ba2698f1SMatthew G. Knepley { 4011412e9a14SMatthew G. Knepley DMPolytopeType ct = DM_POLYTOPE_UNKNOWN; 4012412e9a14SMatthew G. Knepley PetscInt dim, depth, pheight, coneSize; 4013ba2698f1SMatthew G. Knepley 4014412e9a14SMatthew G. Knepley PetscFunctionBeginHot; 40159566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 40169566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 40179566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 4018ba2698f1SMatthew G. Knepley pheight = depth - pdepth; 4019ba2698f1SMatthew G. Knepley if (depth <= 1) { 4020ba2698f1SMatthew G. Knepley switch (pdepth) { 4021ba2698f1SMatthew G. Knepley case 0: ct = DM_POLYTOPE_POINT;break; 4022ba2698f1SMatthew G. Knepley case 1: 4023ba2698f1SMatthew G. Knepley switch (coneSize) { 4024ba2698f1SMatthew G. Knepley case 2: ct = DM_POLYTOPE_SEGMENT;break; 4025ba2698f1SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TRIANGLE;break; 4026ba2698f1SMatthew G. Knepley case 4: 4027ba2698f1SMatthew G. Knepley switch (dim) { 4028ba2698f1SMatthew G. Knepley case 2: ct = DM_POLYTOPE_QUADRILATERAL;break; 4029ba2698f1SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TETRAHEDRON;break; 4030ba2698f1SMatthew G. Knepley default: break; 4031ba2698f1SMatthew G. Knepley } 4032ba2698f1SMatthew G. Knepley break; 4033da9060c4SMatthew G. Knepley case 5: ct = DM_POLYTOPE_PYRAMID;break; 4034ba2698f1SMatthew G. Knepley case 6: ct = DM_POLYTOPE_TRI_PRISM_TENSOR;break; 4035ba2698f1SMatthew G. Knepley case 8: ct = DM_POLYTOPE_HEXAHEDRON;break; 4036ba2698f1SMatthew G. Knepley default: break; 4037ba2698f1SMatthew G. Knepley } 4038ba2698f1SMatthew G. Knepley } 4039ba2698f1SMatthew G. Knepley } else { 4040ba2698f1SMatthew G. Knepley if (pdepth == 0) { 4041ba2698f1SMatthew G. Knepley ct = DM_POLYTOPE_POINT; 4042ba2698f1SMatthew G. Knepley } else if (pheight == 0) { 4043ba2698f1SMatthew G. Knepley switch (dim) { 4044ba2698f1SMatthew G. Knepley case 1: 4045ba2698f1SMatthew G. Knepley switch (coneSize) { 4046ba2698f1SMatthew G. Knepley case 2: ct = DM_POLYTOPE_SEGMENT;break; 4047ba2698f1SMatthew G. Knepley default: break; 4048ba2698f1SMatthew G. Knepley } 4049ba2698f1SMatthew G. Knepley break; 4050ba2698f1SMatthew G. Knepley case 2: 4051ba2698f1SMatthew G. Knepley switch (coneSize) { 4052ba2698f1SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TRIANGLE;break; 4053ba2698f1SMatthew G. Knepley case 4: ct = DM_POLYTOPE_QUADRILATERAL;break; 4054ba2698f1SMatthew G. Knepley default: break; 4055ba2698f1SMatthew G. Knepley } 4056ba2698f1SMatthew G. Knepley break; 4057ba2698f1SMatthew G. Knepley case 3: 4058ba2698f1SMatthew G. Knepley switch (coneSize) { 4059ba2698f1SMatthew G. Knepley case 4: ct = DM_POLYTOPE_TETRAHEDRON;break; 4060da9060c4SMatthew G. Knepley case 5: 4061da9060c4SMatthew G. Knepley { 4062da9060c4SMatthew G. Knepley const PetscInt *cone; 4063da9060c4SMatthew G. Knepley PetscInt faceConeSize; 4064da9060c4SMatthew G. Knepley 40659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 40669566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &faceConeSize)); 4067da9060c4SMatthew G. Knepley switch (faceConeSize) { 4068da9060c4SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TRI_PRISM_TENSOR;break; 4069da9060c4SMatthew G. Knepley case 4: ct = DM_POLYTOPE_PYRAMID;break; 4070da9060c4SMatthew G. Knepley } 4071da9060c4SMatthew G. Knepley } 4072da9060c4SMatthew G. Knepley break; 4073ba2698f1SMatthew G. Knepley case 6: ct = DM_POLYTOPE_HEXAHEDRON;break; 4074ba2698f1SMatthew G. Knepley default: break; 4075ba2698f1SMatthew G. Knepley } 4076ba2698f1SMatthew G. Knepley break; 4077ba2698f1SMatthew G. Knepley default: break; 4078ba2698f1SMatthew G. Knepley } 4079ba2698f1SMatthew G. Knepley } else if (pheight > 0) { 4080ba2698f1SMatthew G. Knepley switch (coneSize) { 4081ba2698f1SMatthew G. Knepley case 2: ct = DM_POLYTOPE_SEGMENT;break; 4082ba2698f1SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TRIANGLE;break; 4083ba2698f1SMatthew G. Knepley case 4: ct = DM_POLYTOPE_QUADRILATERAL;break; 4084ba2698f1SMatthew G. Knepley default: break; 4085ba2698f1SMatthew G. Knepley } 4086ba2698f1SMatthew G. Knepley } 4087ba2698f1SMatthew G. Knepley } 4088412e9a14SMatthew G. Knepley *pt = ct; 4089412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 4090ba2698f1SMatthew G. Knepley } 4091412e9a14SMatthew G. Knepley 4092412e9a14SMatthew G. Knepley /*@ 4093412e9a14SMatthew G. Knepley DMPlexComputeCellTypes - Infer the polytope type of every cell using its dimension and cone size. 4094412e9a14SMatthew G. Knepley 4095412e9a14SMatthew G. Knepley Collective on dm 4096412e9a14SMatthew G. Knepley 4097412e9a14SMatthew G. Knepley Input Parameter: 4098412e9a14SMatthew G. Knepley . mesh - The DMPlex 4099412e9a14SMatthew G. Knepley 4100412e9a14SMatthew G. Knepley DMPlexComputeCellTypes() should be called after all calls to DMPlexSymmetrize() and DMPlexStratify() 4101412e9a14SMatthew G. Knepley 4102412e9a14SMatthew G. Knepley Level: developer 4103412e9a14SMatthew G. Knepley 4104412e9a14SMatthew G. Knepley Note: This function is normally called automatically by Plex when a cell type is requested. It creates an 4105412e9a14SMatthew G. Knepley internal DMLabel named "celltype" which can be directly accessed using DMGetLabel(). A user may disable 4106412e9a14SMatthew G. Knepley automatic creation by creating the label manually, using DMCreateLabel(dm, "celltype"). 4107412e9a14SMatthew G. Knepley 4108db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSymmetrize()`, `DMPlexStratify()`, `DMGetLabel()`, `DMCreateLabel()` 4109412e9a14SMatthew G. Knepley @*/ 4110412e9a14SMatthew G. Knepley PetscErrorCode DMPlexComputeCellTypes(DM dm) 4111412e9a14SMatthew G. Knepley { 4112412e9a14SMatthew G. Knepley DM_Plex *mesh; 4113412e9a14SMatthew G. Knepley DMLabel ctLabel; 4114412e9a14SMatthew G. Knepley PetscInt pStart, pEnd, p; 4115412e9a14SMatthew G. Knepley 4116412e9a14SMatthew G. Knepley PetscFunctionBegin; 4117412e9a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4118412e9a14SMatthew G. Knepley mesh = (DM_Plex *) dm->data; 41199566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, "celltype")); 41209566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 41219566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4122412e9a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4123327c2912SStefano Zampini DMPolytopeType ct = DM_POLYTOPE_UNKNOWN; 4124412e9a14SMatthew G. Knepley PetscInt pdepth; 4125412e9a14SMatthew G. Knepley 41269566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, p, &pdepth)); 41279566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellType_Internal(dm, p, pdepth, &ct)); 412863a3b9bcSJacob Faibussowitsch PetscCheck(ct != DM_POLYTOPE_UNKNOWN,PETSC_COMM_SELF, PETSC_ERR_SUP, "Point %" PetscInt_FMT " is screwed up", p); 41299566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ctLabel, p, ct)); 4130412e9a14SMatthew G. Knepley } 41319566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) ctLabel, &mesh->celltypeState)); 41329566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject) ctLabel, NULL, "-dm_plex_celltypes_view")); 4133ba2698f1SMatthew G. Knepley PetscFunctionReturn(0); 4134ba2698f1SMatthew G. Knepley } 4135ba2698f1SMatthew G. Knepley 4136552f7358SJed Brown /*@C 4137552f7358SJed Brown DMPlexGetJoin - Get an array for the join of the set of points 4138552f7358SJed Brown 4139552f7358SJed Brown Not Collective 4140552f7358SJed Brown 4141552f7358SJed Brown Input Parameters: 4142552f7358SJed Brown + dm - The DMPlex object 4143552f7358SJed Brown . numPoints - The number of input points for the join 4144552f7358SJed Brown - points - The input points 4145552f7358SJed Brown 4146552f7358SJed Brown Output Parameters: 4147552f7358SJed Brown + numCoveredPoints - The number of points in the join 4148552f7358SJed Brown - coveredPoints - The points in the join 4149552f7358SJed Brown 4150552f7358SJed Brown Level: intermediate 4151552f7358SJed Brown 4152552f7358SJed Brown Note: Currently, this is restricted to a single level join 4153552f7358SJed Brown 41543813dfbdSMatthew G Knepley Fortran Notes: 41553813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 41563813dfbdSMatthew G Knepley include petsc.h90 in your code. 41573813dfbdSMatthew G Knepley 41583813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 41593813dfbdSMatthew G Knepley 4160db781477SPatrick Sanan .seealso: `DMPlexRestoreJoin()`, `DMPlexGetMeet()` 4161552f7358SJed Brown @*/ 4162552f7358SJed Brown PetscErrorCode DMPlexGetJoin(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4163552f7358SJed Brown { 4164552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 4165552f7358SJed Brown PetscInt *join[2]; 4166552f7358SJed Brown PetscInt joinSize, i = 0; 4167552f7358SJed Brown PetscInt dof, off, p, c, m; 41686302a7fbSVaclav Hapla PetscInt maxSupportSize; 4169552f7358SJed Brown 4170552f7358SJed Brown PetscFunctionBegin; 4171552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 417248bb261cSVaclav Hapla PetscValidIntPointer(points, 3); 417348bb261cSVaclav Hapla PetscValidIntPointer(numCoveredPoints, 4); 417448bb261cSVaclav Hapla PetscValidPointer(coveredPoints, 5); 41756302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->supportSection, &maxSupportSize)); 41766302a7fbSVaclav Hapla PetscCall(DMGetWorkArray(dm, maxSupportSize, MPIU_INT, &join[0])); 41776302a7fbSVaclav Hapla PetscCall(DMGetWorkArray(dm, maxSupportSize, MPIU_INT, &join[1])); 4178552f7358SJed Brown /* Copy in support of first point */ 41799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, points[0], &dof)); 41809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, points[0], &off)); 4181552f7358SJed Brown for (joinSize = 0; joinSize < dof; ++joinSize) { 4182552f7358SJed Brown join[i][joinSize] = mesh->supports[off+joinSize]; 4183552f7358SJed Brown } 4184552f7358SJed Brown /* Check each successive support */ 4185552f7358SJed Brown for (p = 1; p < numPoints; ++p) { 4186552f7358SJed Brown PetscInt newJoinSize = 0; 4187552f7358SJed Brown 41889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, points[p], &dof)); 41899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, points[p], &off)); 4190552f7358SJed Brown for (c = 0; c < dof; ++c) { 4191552f7358SJed Brown const PetscInt point = mesh->supports[off+c]; 4192552f7358SJed Brown 4193552f7358SJed Brown for (m = 0; m < joinSize; ++m) { 4194552f7358SJed Brown if (point == join[i][m]) { 4195552f7358SJed Brown join[1-i][newJoinSize++] = point; 4196552f7358SJed Brown break; 4197552f7358SJed Brown } 4198552f7358SJed Brown } 4199552f7358SJed Brown } 4200552f7358SJed Brown joinSize = newJoinSize; 4201552f7358SJed Brown i = 1-i; 4202552f7358SJed Brown } 4203552f7358SJed Brown *numCoveredPoints = joinSize; 4204552f7358SJed Brown *coveredPoints = join[i]; 42056302a7fbSVaclav Hapla PetscCall(DMRestoreWorkArray(dm, maxSupportSize, MPIU_INT, &join[1-i])); 4206552f7358SJed Brown PetscFunctionReturn(0); 4207552f7358SJed Brown } 4208552f7358SJed Brown 4209552f7358SJed Brown /*@C 4210552f7358SJed Brown DMPlexRestoreJoin - Restore an array for the join of the set of points 4211552f7358SJed Brown 4212552f7358SJed Brown Not Collective 4213552f7358SJed Brown 4214552f7358SJed Brown Input Parameters: 4215552f7358SJed Brown + dm - The DMPlex object 4216552f7358SJed Brown . numPoints - The number of input points for the join 4217552f7358SJed Brown - points - The input points 4218552f7358SJed Brown 4219552f7358SJed Brown Output Parameters: 4220552f7358SJed Brown + numCoveredPoints - The number of points in the join 4221552f7358SJed Brown - coveredPoints - The points in the join 4222552f7358SJed Brown 42233813dfbdSMatthew G Knepley Fortran Notes: 42243813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 42253813dfbdSMatthew G Knepley include petsc.h90 in your code. 42263813dfbdSMatthew G Knepley 42273813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 42283813dfbdSMatthew G Knepley 4229552f7358SJed Brown Level: intermediate 4230552f7358SJed Brown 4231db781477SPatrick Sanan .seealso: `DMPlexGetJoin()`, `DMPlexGetFullJoin()`, `DMPlexGetMeet()` 4232552f7358SJed Brown @*/ 4233552f7358SJed Brown PetscErrorCode DMPlexRestoreJoin(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4234552f7358SJed Brown { 4235552f7358SJed Brown PetscFunctionBegin; 4236552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4237d7902bd2SMatthew G. Knepley if (points) PetscValidIntPointer(points,3); 4238d7902bd2SMatthew G. Knepley if (numCoveredPoints) PetscValidIntPointer(numCoveredPoints,4); 4239d7902bd2SMatthew G. Knepley PetscValidPointer(coveredPoints, 5); 42409566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_INT, (void*) coveredPoints)); 4241d7902bd2SMatthew G. Knepley if (numCoveredPoints) *numCoveredPoints = 0; 4242552f7358SJed Brown PetscFunctionReturn(0); 4243552f7358SJed Brown } 4244552f7358SJed Brown 4245552f7358SJed Brown /*@C 4246552f7358SJed Brown DMPlexGetFullJoin - Get an array for the join of the set of points 4247552f7358SJed Brown 4248552f7358SJed Brown Not Collective 4249552f7358SJed Brown 4250552f7358SJed Brown Input Parameters: 4251552f7358SJed Brown + dm - The DMPlex object 4252552f7358SJed Brown . numPoints - The number of input points for the join 4253552f7358SJed Brown - points - The input points 4254552f7358SJed Brown 4255552f7358SJed Brown Output Parameters: 4256552f7358SJed Brown + numCoveredPoints - The number of points in the join 4257552f7358SJed Brown - coveredPoints - The points in the join 4258552f7358SJed Brown 42593813dfbdSMatthew G Knepley Fortran Notes: 42603813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 42613813dfbdSMatthew G Knepley include petsc.h90 in your code. 42623813dfbdSMatthew G Knepley 42633813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 42643813dfbdSMatthew G Knepley 4265552f7358SJed Brown Level: intermediate 4266552f7358SJed Brown 4267db781477SPatrick Sanan .seealso: `DMPlexGetJoin()`, `DMPlexRestoreJoin()`, `DMPlexGetMeet()` 4268552f7358SJed Brown @*/ 4269552f7358SJed Brown PetscErrorCode DMPlexGetFullJoin(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4270552f7358SJed Brown { 4271552f7358SJed Brown PetscInt *offsets, **closures; 4272552f7358SJed Brown PetscInt *join[2]; 4273552f7358SJed Brown PetscInt depth = 0, maxSize, joinSize = 0, i = 0; 427424c766afSToby Isaac PetscInt p, d, c, m, ms; 4275552f7358SJed Brown 4276552f7358SJed Brown PetscFunctionBegin; 4277552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 427848bb261cSVaclav Hapla PetscValidIntPointer(points, 3); 427948bb261cSVaclav Hapla PetscValidIntPointer(numCoveredPoints, 4); 428048bb261cSVaclav Hapla PetscValidPointer(coveredPoints, 5); 4281552f7358SJed Brown 42829566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 42839566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numPoints, &closures)); 42849566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numPoints*(depth+2), MPIU_INT, &offsets)); 42856302a7fbSVaclav Hapla PetscCall(DMPlexGetMaxSizes(dm, NULL, &ms)); 428624c766afSToby Isaac maxSize = (ms > 1) ? ((PetscPowInt(ms,depth+1)-1)/(ms-1)) : depth + 1; 42879566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, maxSize, MPIU_INT, &join[0])); 42889566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, maxSize, MPIU_INT, &join[1])); 4289552f7358SJed Brown 4290552f7358SJed Brown for (p = 0; p < numPoints; ++p) { 4291552f7358SJed Brown PetscInt closureSize; 4292552f7358SJed Brown 42939566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closures[p])); 42940d644c17SKarl Rupp 4295552f7358SJed Brown offsets[p*(depth+2)+0] = 0; 4296552f7358SJed Brown for (d = 0; d < depth+1; ++d) { 4297552f7358SJed Brown PetscInt pStart, pEnd, i; 4298552f7358SJed Brown 42999566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 4300552f7358SJed Brown for (i = offsets[p*(depth+2)+d]; i < closureSize; ++i) { 4301552f7358SJed Brown if ((pStart > closures[p][i*2]) || (pEnd <= closures[p][i*2])) { 4302552f7358SJed Brown offsets[p*(depth+2)+d+1] = i; 4303552f7358SJed Brown break; 4304552f7358SJed Brown } 4305552f7358SJed Brown } 4306552f7358SJed Brown if (i == closureSize) offsets[p*(depth+2)+d+1] = i; 4307552f7358SJed Brown } 430863a3b9bcSJacob Faibussowitsch PetscCheck(offsets[p*(depth+2)+depth+1] == closureSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Total size of closure %" PetscInt_FMT " should be %" PetscInt_FMT, offsets[p*(depth+2)+depth+1], closureSize); 4309552f7358SJed Brown } 4310552f7358SJed Brown for (d = 0; d < depth+1; ++d) { 4311552f7358SJed Brown PetscInt dof; 4312552f7358SJed Brown 4313552f7358SJed Brown /* Copy in support of first point */ 4314552f7358SJed Brown dof = offsets[d+1] - offsets[d]; 4315552f7358SJed Brown for (joinSize = 0; joinSize < dof; ++joinSize) { 4316552f7358SJed Brown join[i][joinSize] = closures[0][(offsets[d]+joinSize)*2]; 4317552f7358SJed Brown } 4318552f7358SJed Brown /* Check each successive cone */ 4319552f7358SJed Brown for (p = 1; p < numPoints && joinSize; ++p) { 4320552f7358SJed Brown PetscInt newJoinSize = 0; 4321552f7358SJed Brown 4322552f7358SJed Brown dof = offsets[p*(depth+2)+d+1] - offsets[p*(depth+2)+d]; 4323552f7358SJed Brown for (c = 0; c < dof; ++c) { 4324552f7358SJed Brown const PetscInt point = closures[p][(offsets[p*(depth+2)+d]+c)*2]; 4325552f7358SJed Brown 4326552f7358SJed Brown for (m = 0; m < joinSize; ++m) { 4327552f7358SJed Brown if (point == join[i][m]) { 4328552f7358SJed Brown join[1-i][newJoinSize++] = point; 4329552f7358SJed Brown break; 4330552f7358SJed Brown } 4331552f7358SJed Brown } 4332552f7358SJed Brown } 4333552f7358SJed Brown joinSize = newJoinSize; 4334552f7358SJed Brown i = 1-i; 4335552f7358SJed Brown } 4336552f7358SJed Brown if (joinSize) break; 4337552f7358SJed Brown } 4338552f7358SJed Brown *numCoveredPoints = joinSize; 4339552f7358SJed Brown *coveredPoints = join[i]; 4340552f7358SJed Brown for (p = 0; p < numPoints; ++p) { 43419566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, NULL, &closures[p])); 4342552f7358SJed Brown } 43439566063dSJacob Faibussowitsch PetscCall(PetscFree(closures)); 43449566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numPoints*(depth+2), MPIU_INT, &offsets)); 43456302a7fbSVaclav Hapla PetscCall(DMRestoreWorkArray(dm, ms, MPIU_INT, &join[1-i])); 4346552f7358SJed Brown PetscFunctionReturn(0); 4347552f7358SJed Brown } 4348552f7358SJed Brown 4349552f7358SJed Brown /*@C 4350552f7358SJed Brown DMPlexGetMeet - Get an array for the meet of the set of points 4351552f7358SJed Brown 4352552f7358SJed Brown Not Collective 4353552f7358SJed Brown 4354552f7358SJed Brown Input Parameters: 4355552f7358SJed Brown + dm - The DMPlex object 4356552f7358SJed Brown . numPoints - The number of input points for the meet 4357552f7358SJed Brown - points - The input points 4358552f7358SJed Brown 4359552f7358SJed Brown Output Parameters: 4360552f7358SJed Brown + numCoveredPoints - The number of points in the meet 4361552f7358SJed Brown - coveredPoints - The points in the meet 4362552f7358SJed Brown 4363552f7358SJed Brown Level: intermediate 4364552f7358SJed Brown 4365552f7358SJed Brown Note: Currently, this is restricted to a single level meet 4366552f7358SJed Brown 43673813dfbdSMatthew G Knepley Fortran Notes: 43683813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 43693813dfbdSMatthew G Knepley include petsc.h90 in your code. 43703813dfbdSMatthew G Knepley 43713813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 43723813dfbdSMatthew G Knepley 4373db781477SPatrick Sanan .seealso: `DMPlexRestoreMeet()`, `DMPlexGetJoin()` 4374552f7358SJed Brown @*/ 4375552f7358SJed Brown PetscErrorCode DMPlexGetMeet(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveringPoints, const PetscInt **coveringPoints) 4376552f7358SJed Brown { 4377552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 4378552f7358SJed Brown PetscInt *meet[2]; 4379552f7358SJed Brown PetscInt meetSize, i = 0; 4380552f7358SJed Brown PetscInt dof, off, p, c, m; 43816302a7fbSVaclav Hapla PetscInt maxConeSize; 4382552f7358SJed Brown 4383552f7358SJed Brown PetscFunctionBegin; 4384552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4385dadcf809SJacob Faibussowitsch PetscValidIntPointer(points, 3); 4386dadcf809SJacob Faibussowitsch PetscValidIntPointer(numCoveringPoints, 4); 4387064a246eSJacob Faibussowitsch PetscValidPointer(coveringPoints, 5); 43886302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->coneSection, &maxConeSize)); 43896302a7fbSVaclav Hapla PetscCall(DMGetWorkArray(dm, maxConeSize, MPIU_INT, &meet[0])); 43906302a7fbSVaclav Hapla PetscCall(DMGetWorkArray(dm, maxConeSize, MPIU_INT, &meet[1])); 4391552f7358SJed Brown /* Copy in cone of first point */ 43929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, points[0], &dof)); 43939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, points[0], &off)); 4394552f7358SJed Brown for (meetSize = 0; meetSize < dof; ++meetSize) { 4395552f7358SJed Brown meet[i][meetSize] = mesh->cones[off+meetSize]; 4396552f7358SJed Brown } 4397552f7358SJed Brown /* Check each successive cone */ 4398552f7358SJed Brown for (p = 1; p < numPoints; ++p) { 4399552f7358SJed Brown PetscInt newMeetSize = 0; 4400552f7358SJed Brown 44019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, points[p], &dof)); 44029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, points[p], &off)); 4403552f7358SJed Brown for (c = 0; c < dof; ++c) { 4404552f7358SJed Brown const PetscInt point = mesh->cones[off+c]; 4405552f7358SJed Brown 4406552f7358SJed Brown for (m = 0; m < meetSize; ++m) { 4407552f7358SJed Brown if (point == meet[i][m]) { 4408552f7358SJed Brown meet[1-i][newMeetSize++] = point; 4409552f7358SJed Brown break; 4410552f7358SJed Brown } 4411552f7358SJed Brown } 4412552f7358SJed Brown } 4413552f7358SJed Brown meetSize = newMeetSize; 4414552f7358SJed Brown i = 1-i; 4415552f7358SJed Brown } 4416552f7358SJed Brown *numCoveringPoints = meetSize; 4417552f7358SJed Brown *coveringPoints = meet[i]; 44186302a7fbSVaclav Hapla PetscCall(DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &meet[1-i])); 4419552f7358SJed Brown PetscFunctionReturn(0); 4420552f7358SJed Brown } 4421552f7358SJed Brown 4422552f7358SJed Brown /*@C 4423552f7358SJed Brown DMPlexRestoreMeet - Restore an array for the meet of the set of points 4424552f7358SJed Brown 4425552f7358SJed Brown Not Collective 4426552f7358SJed Brown 4427552f7358SJed Brown Input Parameters: 4428552f7358SJed Brown + dm - The DMPlex object 4429552f7358SJed Brown . numPoints - The number of input points for the meet 4430552f7358SJed Brown - points - The input points 4431552f7358SJed Brown 4432552f7358SJed Brown Output Parameters: 4433552f7358SJed Brown + numCoveredPoints - The number of points in the meet 4434552f7358SJed Brown - coveredPoints - The points in the meet 4435552f7358SJed Brown 4436552f7358SJed Brown Level: intermediate 4437552f7358SJed Brown 44383813dfbdSMatthew G Knepley Fortran Notes: 44393813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 44403813dfbdSMatthew G Knepley include petsc.h90 in your code. 44413813dfbdSMatthew G Knepley 44423813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 44433813dfbdSMatthew G Knepley 4444db781477SPatrick Sanan .seealso: `DMPlexGetMeet()`, `DMPlexGetFullMeet()`, `DMPlexGetJoin()` 4445552f7358SJed Brown @*/ 4446552f7358SJed Brown PetscErrorCode DMPlexRestoreMeet(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4447552f7358SJed Brown { 4448552f7358SJed Brown PetscFunctionBegin; 4449552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4450d7902bd2SMatthew G. Knepley if (points) PetscValidIntPointer(points,3); 4451d7902bd2SMatthew G. Knepley if (numCoveredPoints) PetscValidIntPointer(numCoveredPoints,4); 4452d7902bd2SMatthew G. Knepley PetscValidPointer(coveredPoints,5); 44539566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_INT, (void*) coveredPoints)); 4454d7902bd2SMatthew G. Knepley if (numCoveredPoints) *numCoveredPoints = 0; 4455552f7358SJed Brown PetscFunctionReturn(0); 4456552f7358SJed Brown } 4457552f7358SJed Brown 4458552f7358SJed Brown /*@C 4459552f7358SJed Brown DMPlexGetFullMeet - Get an array for the meet of the set of points 4460552f7358SJed Brown 4461552f7358SJed Brown Not Collective 4462552f7358SJed Brown 4463552f7358SJed Brown Input Parameters: 4464552f7358SJed Brown + dm - The DMPlex object 4465552f7358SJed Brown . numPoints - The number of input points for the meet 4466552f7358SJed Brown - points - The input points 4467552f7358SJed Brown 4468552f7358SJed Brown Output Parameters: 4469552f7358SJed Brown + numCoveredPoints - The number of points in the meet 4470552f7358SJed Brown - coveredPoints - The points in the meet 4471552f7358SJed Brown 4472552f7358SJed Brown Level: intermediate 4473552f7358SJed Brown 44743813dfbdSMatthew G Knepley Fortran Notes: 44753813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 44763813dfbdSMatthew G Knepley include petsc.h90 in your code. 44773813dfbdSMatthew G Knepley 44783813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 44793813dfbdSMatthew G Knepley 4480db781477SPatrick Sanan .seealso: `DMPlexGetMeet()`, `DMPlexRestoreMeet()`, `DMPlexGetJoin()` 4481552f7358SJed Brown @*/ 4482552f7358SJed Brown PetscErrorCode DMPlexGetFullMeet(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4483552f7358SJed Brown { 4484552f7358SJed Brown PetscInt *offsets, **closures; 4485552f7358SJed Brown PetscInt *meet[2]; 4486552f7358SJed Brown PetscInt height = 0, maxSize, meetSize = 0, i = 0; 448724c766afSToby Isaac PetscInt p, h, c, m, mc; 4488552f7358SJed Brown 4489552f7358SJed Brown PetscFunctionBegin; 4490552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4491dadcf809SJacob Faibussowitsch PetscValidIntPointer(points, 3); 4492dadcf809SJacob Faibussowitsch PetscValidIntPointer(numCoveredPoints, 4); 4493064a246eSJacob Faibussowitsch PetscValidPointer(coveredPoints, 5); 4494552f7358SJed Brown 44959566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &height)); 44969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints, &closures)); 44979566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numPoints*(height+2), MPIU_INT, &offsets)); 44986302a7fbSVaclav Hapla PetscCall(DMPlexGetMaxSizes(dm, &mc, NULL)); 449924c766afSToby Isaac maxSize = (mc > 1) ? ((PetscPowInt(mc,height+1)-1)/(mc-1)) : height + 1; 45009566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, maxSize, MPIU_INT, &meet[0])); 45019566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, maxSize, MPIU_INT, &meet[1])); 4502552f7358SJed Brown 4503552f7358SJed Brown for (p = 0; p < numPoints; ++p) { 4504552f7358SJed Brown PetscInt closureSize; 4505552f7358SJed Brown 45069566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closures[p])); 45070d644c17SKarl Rupp 4508552f7358SJed Brown offsets[p*(height+2)+0] = 0; 4509552f7358SJed Brown for (h = 0; h < height+1; ++h) { 4510552f7358SJed Brown PetscInt pStart, pEnd, i; 4511552f7358SJed Brown 45129566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, h, &pStart, &pEnd)); 4513552f7358SJed Brown for (i = offsets[p*(height+2)+h]; i < closureSize; ++i) { 4514552f7358SJed Brown if ((pStart > closures[p][i*2]) || (pEnd <= closures[p][i*2])) { 4515552f7358SJed Brown offsets[p*(height+2)+h+1] = i; 4516552f7358SJed Brown break; 4517552f7358SJed Brown } 4518552f7358SJed Brown } 4519552f7358SJed Brown if (i == closureSize) offsets[p*(height+2)+h+1] = i; 4520552f7358SJed Brown } 452163a3b9bcSJacob Faibussowitsch PetscCheck(offsets[p*(height+2)+height+1] == closureSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Total size of closure %" PetscInt_FMT " should be %" PetscInt_FMT, offsets[p*(height+2)+height+1], closureSize); 4522552f7358SJed Brown } 4523552f7358SJed Brown for (h = 0; h < height+1; ++h) { 4524552f7358SJed Brown PetscInt dof; 4525552f7358SJed Brown 4526552f7358SJed Brown /* Copy in cone of first point */ 4527552f7358SJed Brown dof = offsets[h+1] - offsets[h]; 4528552f7358SJed Brown for (meetSize = 0; meetSize < dof; ++meetSize) { 4529552f7358SJed Brown meet[i][meetSize] = closures[0][(offsets[h]+meetSize)*2]; 4530552f7358SJed Brown } 4531552f7358SJed Brown /* Check each successive cone */ 4532552f7358SJed Brown for (p = 1; p < numPoints && meetSize; ++p) { 4533552f7358SJed Brown PetscInt newMeetSize = 0; 4534552f7358SJed Brown 4535552f7358SJed Brown dof = offsets[p*(height+2)+h+1] - offsets[p*(height+2)+h]; 4536552f7358SJed Brown for (c = 0; c < dof; ++c) { 4537552f7358SJed Brown const PetscInt point = closures[p][(offsets[p*(height+2)+h]+c)*2]; 4538552f7358SJed Brown 4539552f7358SJed Brown for (m = 0; m < meetSize; ++m) { 4540552f7358SJed Brown if (point == meet[i][m]) { 4541552f7358SJed Brown meet[1-i][newMeetSize++] = point; 4542552f7358SJed Brown break; 4543552f7358SJed Brown } 4544552f7358SJed Brown } 4545552f7358SJed Brown } 4546552f7358SJed Brown meetSize = newMeetSize; 4547552f7358SJed Brown i = 1-i; 4548552f7358SJed Brown } 4549552f7358SJed Brown if (meetSize) break; 4550552f7358SJed Brown } 4551552f7358SJed Brown *numCoveredPoints = meetSize; 4552552f7358SJed Brown *coveredPoints = meet[i]; 4553552f7358SJed Brown for (p = 0; p < numPoints; ++p) { 45549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, NULL, &closures[p])); 4555552f7358SJed Brown } 45569566063dSJacob Faibussowitsch PetscCall(PetscFree(closures)); 45579566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numPoints*(height+2), MPIU_INT, &offsets)); 45586302a7fbSVaclav Hapla PetscCall(DMRestoreWorkArray(dm, mc, MPIU_INT, &meet[1-i])); 4559552f7358SJed Brown PetscFunctionReturn(0); 4560552f7358SJed Brown } 4561552f7358SJed Brown 45624e3744c5SMatthew G. Knepley /*@C 45634e3744c5SMatthew G. Knepley DMPlexEqual - Determine if two DMs have the same topology 45644e3744c5SMatthew G. Knepley 45654e3744c5SMatthew G. Knepley Not Collective 45664e3744c5SMatthew G. Knepley 45674e3744c5SMatthew G. Knepley Input Parameters: 45684e3744c5SMatthew G. Knepley + dmA - A DMPlex object 45694e3744c5SMatthew G. Knepley - dmB - A DMPlex object 45704e3744c5SMatthew G. Knepley 45714e3744c5SMatthew G. Knepley Output Parameters: 45724e3744c5SMatthew G. Knepley . equal - PETSC_TRUE if the topologies are identical 45734e3744c5SMatthew G. Knepley 45744e3744c5SMatthew G. Knepley Level: intermediate 45754e3744c5SMatthew G. Knepley 45764e3744c5SMatthew G. Knepley Notes: 45774e3744c5SMatthew G. Knepley We are not solving graph isomorphism, so we do not permutation. 45784e3744c5SMatthew G. Knepley 4579db781477SPatrick Sanan .seealso: `DMPlexGetCone()` 45804e3744c5SMatthew G. Knepley @*/ 45814e3744c5SMatthew G. Knepley PetscErrorCode DMPlexEqual(DM dmA, DM dmB, PetscBool *equal) 45824e3744c5SMatthew G. Knepley { 45834e3744c5SMatthew G. Knepley PetscInt depth, depthB, pStart, pEnd, pStartB, pEndB, p; 45844e3744c5SMatthew G. Knepley 45854e3744c5SMatthew G. Knepley PetscFunctionBegin; 45864e3744c5SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 45874e3744c5SMatthew G. Knepley PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 4588dadcf809SJacob Faibussowitsch PetscValidBoolPointer(equal, 3); 45894e3744c5SMatthew G. Knepley 45904e3744c5SMatthew G. Knepley *equal = PETSC_FALSE; 45919566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dmA, &depth)); 45929566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dmB, &depthB)); 45934e3744c5SMatthew G. Knepley if (depth != depthB) PetscFunctionReturn(0); 45949566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmA, &pStart, &pEnd)); 45959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmB, &pStartB, &pEndB)); 45964e3744c5SMatthew G. Knepley if ((pStart != pStartB) || (pEnd != pEndB)) PetscFunctionReturn(0); 45974e3744c5SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 45984e3744c5SMatthew G. Knepley const PetscInt *cone, *coneB, *ornt, *orntB, *support, *supportB; 45994e3744c5SMatthew G. Knepley PetscInt coneSize, coneSizeB, c, supportSize, supportSizeB, s; 46004e3744c5SMatthew G. Knepley 46019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dmA, p, &coneSize)); 46029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dmA, p, &cone)); 46039566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dmA, p, &ornt)); 46049566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dmB, p, &coneSizeB)); 46059566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dmB, p, &coneB)); 46069566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dmB, p, &orntB)); 46074e3744c5SMatthew G. Knepley if (coneSize != coneSizeB) PetscFunctionReturn(0); 46084e3744c5SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 46094e3744c5SMatthew G. Knepley if (cone[c] != coneB[c]) PetscFunctionReturn(0); 46104e3744c5SMatthew G. Knepley if (ornt[c] != orntB[c]) PetscFunctionReturn(0); 46114e3744c5SMatthew G. Knepley } 46129566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmA, p, &supportSize)); 46139566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmA, p, &support)); 46149566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmB, p, &supportSizeB)); 46159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmB, p, &supportB)); 46164e3744c5SMatthew G. Knepley if (supportSize != supportSizeB) PetscFunctionReturn(0); 46174e3744c5SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 46184e3744c5SMatthew G. Knepley if (support[s] != supportB[s]) PetscFunctionReturn(0); 46194e3744c5SMatthew G. Knepley } 46204e3744c5SMatthew G. Knepley } 46214e3744c5SMatthew G. Knepley *equal = PETSC_TRUE; 46224e3744c5SMatthew G. Knepley PetscFunctionReturn(0); 46234e3744c5SMatthew G. Knepley } 46244e3744c5SMatthew G. Knepley 46257cd05799SMatthew G. Knepley /*@C 46267cd05799SMatthew G. Knepley DMPlexGetNumFaceVertices - Returns the number of vertices on a face 46277cd05799SMatthew G. Knepley 46287cd05799SMatthew G. Knepley Not Collective 46297cd05799SMatthew G. Knepley 46307cd05799SMatthew G. Knepley Input Parameters: 46317cd05799SMatthew G. Knepley + dm - The DMPlex 46327cd05799SMatthew G. Knepley . cellDim - The cell dimension 46337cd05799SMatthew G. Knepley - numCorners - The number of vertices on a cell 46347cd05799SMatthew G. Knepley 46357cd05799SMatthew G. Knepley Output Parameters: 46367cd05799SMatthew G. Knepley . numFaceVertices - The number of vertices on a face 46377cd05799SMatthew G. Knepley 46387cd05799SMatthew G. Knepley Level: developer 46397cd05799SMatthew G. Knepley 46407cd05799SMatthew G. Knepley Notes: 46417cd05799SMatthew G. Knepley Of course this can only work for a restricted set of symmetric shapes 46427cd05799SMatthew G. Knepley 4643db781477SPatrick Sanan .seealso: `DMPlexGetCone()` 46447cd05799SMatthew G. Knepley @*/ 464518ad9376SMatthew G. Knepley PetscErrorCode DMPlexGetNumFaceVertices(DM dm, PetscInt cellDim, PetscInt numCorners, PetscInt *numFaceVertices) 4646a6dfd86eSKarl Rupp { 464782f516ccSBarry Smith MPI_Comm comm; 4648552f7358SJed Brown 4649552f7358SJed Brown PetscFunctionBegin; 46509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 4651dadcf809SJacob Faibussowitsch PetscValidIntPointer(numFaceVertices,4); 4652552f7358SJed Brown switch (cellDim) { 4653552f7358SJed Brown case 0: 4654552f7358SJed Brown *numFaceVertices = 0; 4655552f7358SJed Brown break; 4656552f7358SJed Brown case 1: 4657552f7358SJed Brown *numFaceVertices = 1; 4658552f7358SJed Brown break; 4659552f7358SJed Brown case 2: 4660552f7358SJed Brown switch (numCorners) { 466119436ca2SJed Brown case 3: /* triangle */ 466219436ca2SJed Brown *numFaceVertices = 2; /* Edge has 2 vertices */ 4663552f7358SJed Brown break; 466419436ca2SJed Brown case 4: /* quadrilateral */ 466519436ca2SJed Brown *numFaceVertices = 2; /* Edge has 2 vertices */ 4666552f7358SJed Brown break; 466719436ca2SJed Brown case 6: /* quadratic triangle, tri and quad cohesive Lagrange cells */ 466819436ca2SJed Brown *numFaceVertices = 3; /* Edge has 3 vertices */ 4669552f7358SJed Brown break; 467019436ca2SJed Brown case 9: /* quadratic quadrilateral, quadratic quad cohesive Lagrange cells */ 467119436ca2SJed Brown *numFaceVertices = 3; /* Edge has 3 vertices */ 4672552f7358SJed Brown break; 4673552f7358SJed Brown default: 467463a3b9bcSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid number of face corners %" PetscInt_FMT " for dimension %" PetscInt_FMT, numCorners, cellDim); 4675552f7358SJed Brown } 4676552f7358SJed Brown break; 4677552f7358SJed Brown case 3: 4678552f7358SJed Brown switch (numCorners) { 467919436ca2SJed Brown case 4: /* tetradehdron */ 468019436ca2SJed Brown *numFaceVertices = 3; /* Face has 3 vertices */ 4681552f7358SJed Brown break; 468219436ca2SJed Brown case 6: /* tet cohesive cells */ 468319436ca2SJed Brown *numFaceVertices = 4; /* Face has 4 vertices */ 4684552f7358SJed Brown break; 468519436ca2SJed Brown case 8: /* hexahedron */ 468619436ca2SJed Brown *numFaceVertices = 4; /* Face has 4 vertices */ 4687552f7358SJed Brown break; 468819436ca2SJed Brown case 9: /* tet cohesive Lagrange cells */ 468919436ca2SJed Brown *numFaceVertices = 6; /* Face has 6 vertices */ 4690552f7358SJed Brown break; 469119436ca2SJed Brown case 10: /* quadratic tetrahedron */ 469219436ca2SJed Brown *numFaceVertices = 6; /* Face has 6 vertices */ 4693552f7358SJed Brown break; 469419436ca2SJed Brown case 12: /* hex cohesive Lagrange cells */ 469519436ca2SJed Brown *numFaceVertices = 6; /* Face has 6 vertices */ 4696552f7358SJed Brown break; 469719436ca2SJed Brown case 18: /* quadratic tet cohesive Lagrange cells */ 469819436ca2SJed Brown *numFaceVertices = 6; /* Face has 6 vertices */ 4699552f7358SJed Brown break; 470019436ca2SJed Brown case 27: /* quadratic hexahedron, quadratic hex cohesive Lagrange cells */ 470119436ca2SJed Brown *numFaceVertices = 9; /* Face has 9 vertices */ 4702552f7358SJed Brown break; 4703552f7358SJed Brown default: 470463a3b9bcSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid number of face corners %" PetscInt_FMT " for dimension %" PetscInt_FMT, numCorners, cellDim); 4705552f7358SJed Brown } 4706552f7358SJed Brown break; 4707552f7358SJed Brown default: 470863a3b9bcSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid cell dimension %" PetscInt_FMT, cellDim); 4709552f7358SJed Brown } 4710552f7358SJed Brown PetscFunctionReturn(0); 4711552f7358SJed Brown } 4712552f7358SJed Brown 4713552f7358SJed Brown /*@ 4714aa50250dSMatthew G. Knepley DMPlexGetDepthLabel - Get the DMLabel recording the depth of each point 4715552f7358SJed Brown 4716552f7358SJed Brown Not Collective 4717552f7358SJed Brown 4718aa50250dSMatthew G. Knepley Input Parameter: 4719552f7358SJed Brown . dm - The DMPlex object 4720552f7358SJed Brown 4721aa50250dSMatthew G. Knepley Output Parameter: 4722aa50250dSMatthew G. Knepley . depthLabel - The DMLabel recording point depth 4723552f7358SJed Brown 4724552f7358SJed Brown Level: developer 4725552f7358SJed Brown 4726db781477SPatrick Sanan .seealso: `DMPlexGetDepth()`, `DMPlexGetHeightStratum()`, `DMPlexGetDepthStratum()`, `DMPlexGetPointDepth()`, 4727aa50250dSMatthew G. Knepley @*/ 4728aa50250dSMatthew G. Knepley PetscErrorCode DMPlexGetDepthLabel(DM dm, DMLabel *depthLabel) 4729aa50250dSMatthew G. Knepley { 4730aa50250dSMatthew G. Knepley PetscFunctionBegin; 4731aa50250dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4732aa50250dSMatthew G. Knepley PetscValidPointer(depthLabel, 2); 4733c58f1c22SToby Isaac *depthLabel = dm->depthLabel; 4734aa50250dSMatthew G. Knepley PetscFunctionReturn(0); 4735aa50250dSMatthew G. Knepley } 4736aa50250dSMatthew G. Knepley 4737aa50250dSMatthew G. Knepley /*@ 4738aa50250dSMatthew G. Knepley DMPlexGetDepth - Get the depth of the DAG representing this mesh 4739aa50250dSMatthew G. Knepley 4740aa50250dSMatthew G. Knepley Not Collective 4741aa50250dSMatthew G. Knepley 4742aa50250dSMatthew G. Knepley Input Parameter: 4743aa50250dSMatthew G. Knepley . dm - The DMPlex object 4744aa50250dSMatthew G. Knepley 4745aa50250dSMatthew G. Knepley Output Parameter: 4746aa50250dSMatthew G. Knepley . depth - The number of strata (breadth first levels) in the DAG 4747aa50250dSMatthew G. Knepley 4748aa50250dSMatthew G. Knepley Level: developer 4749552f7358SJed Brown 4750b1bb481bSMatthew Knepley Notes: 4751b1bb481bSMatthew Knepley This returns maximum of point depths over all points, i.e. maximum value of the label returned by DMPlexGetDepthLabel(). 4752dc287ab2SVaclav Hapla The point depth is described more in detail in DMPlexGetDepthStratum(). 4753dc287ab2SVaclav Hapla An empty mesh gives -1. 4754b1bb481bSMatthew Knepley 4755db781477SPatrick Sanan .seealso: `DMPlexGetDepthLabel()`, `DMPlexGetDepthStratum()`, `DMPlexGetPointDepth()`, `DMPlexSymmetrize()` 4756552f7358SJed Brown @*/ 4757552f7358SJed Brown PetscErrorCode DMPlexGetDepth(DM dm, PetscInt *depth) 4758552f7358SJed Brown { 4759aa50250dSMatthew G. Knepley DMLabel label; 4760aa50250dSMatthew G. Knepley PetscInt d = 0; 4761552f7358SJed Brown 4762552f7358SJed Brown PetscFunctionBegin; 4763552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4764dadcf809SJacob Faibussowitsch PetscValidIntPointer(depth, 2); 47659566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 47669566063dSJacob Faibussowitsch if (label) PetscCall(DMLabelGetNumValues(label, &d)); 4767552f7358SJed Brown *depth = d-1; 4768552f7358SJed Brown PetscFunctionReturn(0); 4769552f7358SJed Brown } 4770552f7358SJed Brown 4771552f7358SJed Brown /*@ 4772552f7358SJed Brown DMPlexGetDepthStratum - Get the bounds [start, end) for all points at a certain depth. 4773552f7358SJed Brown 4774552f7358SJed Brown Not Collective 4775552f7358SJed Brown 4776552f7358SJed Brown Input Parameters: 4777552f7358SJed Brown + dm - The DMPlex object 4778570fa34dSVaclav Hapla - depth - The requested depth 4779552f7358SJed Brown 4780552f7358SJed Brown Output Parameters: 4781552f7358SJed Brown + start - The first point at this depth 4782552f7358SJed Brown - end - One beyond the last point at this depth 4783552f7358SJed Brown 4784647867b2SJed Brown Notes: 4785647867b2SJed Brown Depth indexing is related to topological dimension. Depth stratum 0 contains the lowest topological dimension points, 4786647867b2SJed Brown often "vertices". If the mesh is "interpolated" (see DMPlexInterpolate()), then depth stratum 1 contains the next 4787647867b2SJed Brown higher dimension, e.g., "edges". 4788647867b2SJed Brown 4789552f7358SJed Brown Level: developer 4790552f7358SJed Brown 4791db781477SPatrick Sanan .seealso: `DMPlexGetHeightStratum()`, `DMPlexGetDepth()`, `DMPlexGetDepthLabel()`, `DMPlexGetPointDepth()`, `DMPlexSymmetrize()`, `DMPlexInterpolate()` 4792552f7358SJed Brown @*/ 4793570fa34dSVaclav Hapla PetscErrorCode DMPlexGetDepthStratum(DM dm, PetscInt depth, PetscInt *start, PetscInt *end) 47940adebc6cSBarry Smith { 4795aa50250dSMatthew G. Knepley DMLabel label; 479663d1a920SMatthew G. Knepley PetscInt pStart, pEnd; 4797552f7358SJed Brown 4798552f7358SJed Brown PetscFunctionBegin; 4799552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4800dadcf809SJacob Faibussowitsch if (start) {PetscValidIntPointer(start, 3); *start = 0;} 4801dadcf809SJacob Faibussowitsch if (end) {PetscValidIntPointer(end, 4); *end = 0;} 48029566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 48030d644c17SKarl Rupp if (pStart == pEnd) PetscFunctionReturn(0); 4804570fa34dSVaclav Hapla if (depth < 0) { 480563d1a920SMatthew G. Knepley if (start) *start = pStart; 480663d1a920SMatthew G. Knepley if (end) *end = pEnd; 480763d1a920SMatthew G. Knepley PetscFunctionReturn(0); 4808552f7358SJed Brown } 48099566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 481028b400f6SJacob Faibussowitsch PetscCheck(label,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "No label named depth was found"); 4811570fa34dSVaclav Hapla PetscCall(DMLabelGetStratumBounds(label, depth, start, end)); 4812552f7358SJed Brown PetscFunctionReturn(0); 4813552f7358SJed Brown } 4814552f7358SJed Brown 4815552f7358SJed Brown /*@ 4816552f7358SJed Brown DMPlexGetHeightStratum - Get the bounds [start, end) for all points at a certain height. 4817552f7358SJed Brown 4818552f7358SJed Brown Not Collective 4819552f7358SJed Brown 4820552f7358SJed Brown Input Parameters: 4821552f7358SJed Brown + dm - The DMPlex object 4822570fa34dSVaclav Hapla - height - The requested height 4823552f7358SJed Brown 4824552f7358SJed Brown Output Parameters: 4825552f7358SJed Brown + start - The first point at this height 4826552f7358SJed Brown - end - One beyond the last point at this height 4827552f7358SJed Brown 4828647867b2SJed Brown Notes: 4829647867b2SJed Brown Height indexing is related to topological codimension. Height stratum 0 contains the highest topological dimension 4830647867b2SJed Brown points, often called "cells" or "elements". If the mesh is "interpolated" (see DMPlexInterpolate()), then height 4831647867b2SJed Brown stratum 1 contains the boundary of these "cells", often called "faces" or "facets". 4832647867b2SJed Brown 4833552f7358SJed Brown Level: developer 4834552f7358SJed Brown 4835db781477SPatrick Sanan .seealso: `DMPlexGetDepthStratum()`, `DMPlexGetDepth()`, `DMPlexGetPointHeight()` 4836552f7358SJed Brown @*/ 4837570fa34dSVaclav Hapla PetscErrorCode DMPlexGetHeightStratum(DM dm, PetscInt height, PetscInt *start, PetscInt *end) 48380adebc6cSBarry Smith { 4839aa50250dSMatthew G. Knepley DMLabel label; 484063d1a920SMatthew G. Knepley PetscInt depth, pStart, pEnd; 4841552f7358SJed Brown 4842552f7358SJed Brown PetscFunctionBegin; 4843552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4844dadcf809SJacob Faibussowitsch if (start) {PetscValidIntPointer(start, 3); *start = 0;} 4845dadcf809SJacob Faibussowitsch if (end) {PetscValidIntPointer(end, 4); *end = 0;} 48469566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 48470d644c17SKarl Rupp if (pStart == pEnd) PetscFunctionReturn(0); 4848570fa34dSVaclav Hapla if (height < 0) { 484963d1a920SMatthew G. Knepley if (start) *start = pStart; 485063d1a920SMatthew G. Knepley if (end) *end = pEnd; 485163d1a920SMatthew G. Knepley PetscFunctionReturn(0); 4852552f7358SJed Brown } 48539566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 485428b400f6SJacob Faibussowitsch PetscCheck(label,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "No label named depth was found"); 48559566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &depth)); 4856570fa34dSVaclav Hapla PetscCall(DMLabelGetStratumBounds(label, depth-1-height, start, end)); 4857552f7358SJed Brown PetscFunctionReturn(0); 4858552f7358SJed Brown } 4859552f7358SJed Brown 4860ba2698f1SMatthew G. Knepley /*@ 4861ba2698f1SMatthew G. Knepley DMPlexGetPointDepth - Get the depth of a given point 4862ba2698f1SMatthew G. Knepley 4863ba2698f1SMatthew G. Knepley Not Collective 4864ba2698f1SMatthew G. Knepley 4865d8d19677SJose E. Roman Input Parameters: 4866ba2698f1SMatthew G. Knepley + dm - The DMPlex object 4867ba2698f1SMatthew G. Knepley - point - The point 4868ba2698f1SMatthew G. Knepley 4869ba2698f1SMatthew G. Knepley Output Parameter: 4870ba2698f1SMatthew G. Knepley . depth - The depth of the point 4871ba2698f1SMatthew G. Knepley 4872ba2698f1SMatthew G. Knepley Level: intermediate 4873ba2698f1SMatthew G. Knepley 4874db781477SPatrick Sanan .seealso: `DMPlexGetCellType()`, `DMPlexGetDepthLabel()`, `DMPlexGetDepth()`, `DMPlexGetPointHeight()` 4875ba2698f1SMatthew G. Knepley @*/ 4876ba2698f1SMatthew G. Knepley PetscErrorCode DMPlexGetPointDepth(DM dm, PetscInt point, PetscInt *depth) 4877ba2698f1SMatthew G. Knepley { 4878ba2698f1SMatthew G. Knepley PetscFunctionBegin; 4879ba2698f1SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 488040a2aa30SMatthew G. Knepley PetscValidIntPointer(depth, 3); 48819566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->depthLabel, point, depth)); 4882ba2698f1SMatthew G. Knepley PetscFunctionReturn(0); 4883ba2698f1SMatthew G. Knepley } 4884ba2698f1SMatthew G. Knepley 4885ba2698f1SMatthew G. Knepley /*@ 48860c0a32dcSVaclav Hapla DMPlexGetPointHeight - Get the height of a given point 48870c0a32dcSVaclav Hapla 48880c0a32dcSVaclav Hapla Not Collective 48890c0a32dcSVaclav Hapla 4890d8d19677SJose E. Roman Input Parameters: 48910c0a32dcSVaclav Hapla + dm - The DMPlex object 48920c0a32dcSVaclav Hapla - point - The point 48930c0a32dcSVaclav Hapla 48940c0a32dcSVaclav Hapla Output Parameter: 48950c0a32dcSVaclav Hapla . height - The height of the point 48960c0a32dcSVaclav Hapla 48970c0a32dcSVaclav Hapla Level: intermediate 48980c0a32dcSVaclav Hapla 4899db781477SPatrick Sanan .seealso: `DMPlexGetCellType()`, `DMPlexGetDepthLabel()`, `DMPlexGetDepth()`, `DMPlexGetPointDepth()` 49000c0a32dcSVaclav Hapla @*/ 49010c0a32dcSVaclav Hapla PetscErrorCode DMPlexGetPointHeight(DM dm, PetscInt point, PetscInt *height) 49020c0a32dcSVaclav Hapla { 49030c0a32dcSVaclav Hapla PetscInt n, pDepth; 49040c0a32dcSVaclav Hapla 49050c0a32dcSVaclav Hapla PetscFunctionBegin; 49060c0a32dcSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49070c0a32dcSVaclav Hapla PetscValidIntPointer(height, 3); 49089566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(dm->depthLabel, &n)); 49099566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->depthLabel, point, &pDepth)); 49100c0a32dcSVaclav Hapla *height = n - 1 - pDepth; /* DAG depth is n-1 */ 49110c0a32dcSVaclav Hapla PetscFunctionReturn(0); 49120c0a32dcSVaclav Hapla } 49130c0a32dcSVaclav Hapla 49140c0a32dcSVaclav Hapla /*@ 4915ba2698f1SMatthew G. Knepley DMPlexGetCellTypeLabel - Get the DMLabel recording the polytope type of each cell 4916ba2698f1SMatthew G. Knepley 4917ba2698f1SMatthew G. Knepley Not Collective 4918ba2698f1SMatthew G. Knepley 4919ba2698f1SMatthew G. Knepley Input Parameter: 4920ba2698f1SMatthew G. Knepley . dm - The DMPlex object 4921ba2698f1SMatthew G. Knepley 4922ba2698f1SMatthew G. Knepley Output Parameter: 4923ba2698f1SMatthew G. Knepley . celltypeLabel - The DMLabel recording cell polytope type 4924ba2698f1SMatthew G. Knepley 4925412e9a14SMatthew G. Knepley Note: This function will trigger automatica computation of cell types. This can be disabled by calling 4926412e9a14SMatthew G. Knepley DMCreateLabel(dm, "celltype") beforehand. 4927412e9a14SMatthew G. Knepley 4928ba2698f1SMatthew G. Knepley Level: developer 4929ba2698f1SMatthew G. Knepley 4930db781477SPatrick Sanan .seealso: `DMPlexGetCellType()`, `DMPlexGetDepthLabel()`, `DMCreateLabel()` 4931ba2698f1SMatthew G. Knepley @*/ 4932ba2698f1SMatthew G. Knepley PetscErrorCode DMPlexGetCellTypeLabel(DM dm, DMLabel *celltypeLabel) 4933ba2698f1SMatthew G. Knepley { 4934ba2698f1SMatthew G. Knepley PetscFunctionBegin; 4935ba2698f1SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4936ba2698f1SMatthew G. Knepley PetscValidPointer(celltypeLabel, 2); 49379566063dSJacob Faibussowitsch if (!dm->celltypeLabel) PetscCall(DMPlexComputeCellTypes(dm)); 4938ba2698f1SMatthew G. Knepley *celltypeLabel = dm->celltypeLabel; 4939ba2698f1SMatthew G. Knepley PetscFunctionReturn(0); 4940ba2698f1SMatthew G. Knepley } 4941ba2698f1SMatthew G. Knepley 4942ba2698f1SMatthew G. Knepley /*@ 4943ba2698f1SMatthew G. Knepley DMPlexGetCellType - Get the polytope type of a given cell 4944ba2698f1SMatthew G. Knepley 4945ba2698f1SMatthew G. Knepley Not Collective 4946ba2698f1SMatthew G. Knepley 4947d8d19677SJose E. Roman Input Parameters: 4948ba2698f1SMatthew G. Knepley + dm - The DMPlex object 4949ba2698f1SMatthew G. Knepley - cell - The cell 4950ba2698f1SMatthew G. Knepley 4951ba2698f1SMatthew G. Knepley Output Parameter: 4952ba2698f1SMatthew G. Knepley . celltype - The polytope type of the cell 4953ba2698f1SMatthew G. Knepley 4954ba2698f1SMatthew G. Knepley Level: intermediate 4955ba2698f1SMatthew G. Knepley 4956db781477SPatrick Sanan .seealso: `DMPlexGetCellTypeLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetDepth()` 4957ba2698f1SMatthew G. Knepley @*/ 4958ba2698f1SMatthew G. Knepley PetscErrorCode DMPlexGetCellType(DM dm, PetscInt cell, DMPolytopeType *celltype) 4959ba2698f1SMatthew G. Knepley { 4960ba2698f1SMatthew G. Knepley DMLabel label; 4961ba2698f1SMatthew G. Knepley PetscInt ct; 4962ba2698f1SMatthew G. Knepley 4963ba2698f1SMatthew G. Knepley PetscFunctionBegin; 4964ba2698f1SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4965ba2698f1SMatthew G. Knepley PetscValidPointer(celltype, 3); 49669566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &label)); 49679566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, cell, &ct)); 496863a3b9bcSJacob Faibussowitsch PetscCheck(ct >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cell %" PetscInt_FMT " has not been assigned a cell type", cell); 4969ba2698f1SMatthew G. Knepley *celltype = (DMPolytopeType) ct; 4970ba2698f1SMatthew G. Knepley PetscFunctionReturn(0); 4971ba2698f1SMatthew G. Knepley } 4972ba2698f1SMatthew G. Knepley 4973412e9a14SMatthew G. Knepley /*@ 4974412e9a14SMatthew G. Knepley DMPlexSetCellType - Set the polytope type of a given cell 4975412e9a14SMatthew G. Knepley 4976412e9a14SMatthew G. Knepley Not Collective 4977412e9a14SMatthew G. Knepley 4978412e9a14SMatthew G. Knepley Input Parameters: 4979412e9a14SMatthew G. Knepley + dm - The DMPlex object 4980412e9a14SMatthew G. Knepley . cell - The cell 4981412e9a14SMatthew G. Knepley - celltype - The polytope type of the cell 4982412e9a14SMatthew G. Knepley 4983412e9a14SMatthew G. Knepley Note: By default, cell types will be automatically computed using DMPlexComputeCellTypes() before this function 4984412e9a14SMatthew G. Knepley is executed. This function will override the computed type. However, if automatic classification will not succeed 4985412e9a14SMatthew G. Knepley and a user wants to manually specify all types, the classification must be disabled by calling 4986412e9a14SMatthew G. Knepley DMCreaateLabel(dm, "celltype") before getting or setting any cell types. 4987412e9a14SMatthew G. Knepley 4988412e9a14SMatthew G. Knepley Level: advanced 4989412e9a14SMatthew G. Knepley 4990db781477SPatrick Sanan .seealso: `DMPlexGetCellTypeLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetDepth()`, `DMPlexComputeCellTypes()`, `DMCreateLabel()` 4991412e9a14SMatthew G. Knepley @*/ 4992412e9a14SMatthew G. Knepley PetscErrorCode DMPlexSetCellType(DM dm, PetscInt cell, DMPolytopeType celltype) 4993412e9a14SMatthew G. Knepley { 4994412e9a14SMatthew G. Knepley DMLabel label; 4995412e9a14SMatthew G. Knepley 4996412e9a14SMatthew G. Knepley PetscFunctionBegin; 4997412e9a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49989566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &label)); 49999566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, cell, celltype)); 5000412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 5001412e9a14SMatthew G. Knepley } 5002412e9a14SMatthew G. Knepley 50030adebc6cSBarry Smith PetscErrorCode DMCreateCoordinateDM_Plex(DM dm, DM *cdm) 50040adebc6cSBarry Smith { 5005efe440bfSMatthew G. Knepley PetscSection section, s; 5006efe440bfSMatthew G. Knepley Mat m; 50073e922f36SToby Isaac PetscInt maxHeight; 5008552f7358SJed Brown 5009552f7358SJed Brown PetscFunctionBegin; 50109566063dSJacob Faibussowitsch PetscCall(DMClone(dm, cdm)); 50119566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxProjectionHeight(dm, &maxHeight)); 50129566063dSJacob Faibussowitsch PetscCall(DMPlexSetMaxProjectionHeight(*cdm, maxHeight)); 50139566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), §ion)); 50149566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(*cdm, section)); 50159566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ion)); 50169566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &s)); 50179566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &m)); 50189566063dSJacob Faibussowitsch PetscCall(DMSetDefaultConstraints(*cdm, s, m, NULL)); 50199566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&s)); 50209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&m)); 50218f4c458bSMatthew G. Knepley 50229566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(*cdm, 1)); 50239566063dSJacob Faibussowitsch PetscCall(DMCreateDS(*cdm)); 5024552f7358SJed Brown PetscFunctionReturn(0); 5025552f7358SJed Brown } 5026552f7358SJed Brown 5027f19dbd58SToby Isaac PetscErrorCode DMCreateCoordinateField_Plex(DM dm, DMField *field) 5028f19dbd58SToby Isaac { 5029f19dbd58SToby Isaac Vec coordsLocal; 5030f19dbd58SToby Isaac DM coordsDM; 5031f19dbd58SToby Isaac 5032f19dbd58SToby Isaac PetscFunctionBegin; 5033f19dbd58SToby Isaac *field = NULL; 50349566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm,&coordsLocal)); 50359566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm,&coordsDM)); 5036f19dbd58SToby Isaac if (coordsLocal && coordsDM) { 50379566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDS(coordsDM, 0, coordsLocal, field)); 5038f19dbd58SToby Isaac } 5039f19dbd58SToby Isaac PetscFunctionReturn(0); 5040f19dbd58SToby Isaac } 5041f19dbd58SToby Isaac 50427cd05799SMatthew G. Knepley /*@C 50437cd05799SMatthew G. Knepley DMPlexGetConeSection - Return a section which describes the layout of cone data 50447cd05799SMatthew G. Knepley 50457cd05799SMatthew G. Knepley Not Collective 50467cd05799SMatthew G. Knepley 50477cd05799SMatthew G. Knepley Input Parameters: 50487cd05799SMatthew G. Knepley . dm - The DMPlex object 50497cd05799SMatthew G. Knepley 50507cd05799SMatthew G. Knepley Output Parameter: 50517cd05799SMatthew G. Knepley . section - The PetscSection object 50527cd05799SMatthew G. Knepley 50537cd05799SMatthew G. Knepley Level: developer 50547cd05799SMatthew G. Knepley 5055db781477SPatrick Sanan .seealso: `DMPlexGetSupportSection()`, `DMPlexGetCones()`, `DMPlexGetConeOrientations()` 50567cd05799SMatthew G. Knepley @*/ 50570adebc6cSBarry Smith PetscErrorCode DMPlexGetConeSection(DM dm, PetscSection *section) 50580adebc6cSBarry Smith { 5059552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 5060552f7358SJed Brown 5061552f7358SJed Brown PetscFunctionBegin; 5062552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5063552f7358SJed Brown if (section) *section = mesh->coneSection; 5064552f7358SJed Brown PetscFunctionReturn(0); 5065552f7358SJed Brown } 5066552f7358SJed Brown 50677cd05799SMatthew G. Knepley /*@C 50687cd05799SMatthew G. Knepley DMPlexGetSupportSection - Return a section which describes the layout of support data 50697cd05799SMatthew G. Knepley 50707cd05799SMatthew G. Knepley Not Collective 50717cd05799SMatthew G. Knepley 50727cd05799SMatthew G. Knepley Input Parameters: 50737cd05799SMatthew G. Knepley . dm - The DMPlex object 50747cd05799SMatthew G. Knepley 50757cd05799SMatthew G. Knepley Output Parameter: 50767cd05799SMatthew G. Knepley . section - The PetscSection object 50777cd05799SMatthew G. Knepley 50787cd05799SMatthew G. Knepley Level: developer 50797cd05799SMatthew G. Knepley 5080db781477SPatrick Sanan .seealso: `DMPlexGetConeSection()` 50817cd05799SMatthew G. Knepley @*/ 50828cb4d582SMatthew G. Knepley PetscErrorCode DMPlexGetSupportSection(DM dm, PetscSection *section) 50838cb4d582SMatthew G. Knepley { 50848cb4d582SMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 50858cb4d582SMatthew G. Knepley 50868cb4d582SMatthew G. Knepley PetscFunctionBegin; 50878cb4d582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50888cb4d582SMatthew G. Knepley if (section) *section = mesh->supportSection; 50898cb4d582SMatthew G. Knepley PetscFunctionReturn(0); 50908cb4d582SMatthew G. Knepley } 50918cb4d582SMatthew G. Knepley 50927cd05799SMatthew G. Knepley /*@C 50937cd05799SMatthew G. Knepley DMPlexGetCones - Return cone data 50947cd05799SMatthew G. Knepley 50957cd05799SMatthew G. Knepley Not Collective 50967cd05799SMatthew G. Knepley 50977cd05799SMatthew G. Knepley Input Parameters: 50987cd05799SMatthew G. Knepley . dm - The DMPlex object 50997cd05799SMatthew G. Knepley 51007cd05799SMatthew G. Knepley Output Parameter: 51017cd05799SMatthew G. Knepley . cones - The cone for each point 51027cd05799SMatthew G. Knepley 51037cd05799SMatthew G. Knepley Level: developer 51047cd05799SMatthew G. Knepley 5105db781477SPatrick Sanan .seealso: `DMPlexGetConeSection()` 51067cd05799SMatthew G. Knepley @*/ 5107a6dfd86eSKarl Rupp PetscErrorCode DMPlexGetCones(DM dm, PetscInt *cones[]) 5108a6dfd86eSKarl Rupp { 5109552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 5110552f7358SJed Brown 5111552f7358SJed Brown PetscFunctionBegin; 5112552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5113552f7358SJed Brown if (cones) *cones = mesh->cones; 5114552f7358SJed Brown PetscFunctionReturn(0); 5115552f7358SJed Brown } 5116552f7358SJed Brown 51177cd05799SMatthew G. Knepley /*@C 51187cd05799SMatthew G. Knepley DMPlexGetConeOrientations - Return cone orientation data 51197cd05799SMatthew G. Knepley 51207cd05799SMatthew G. Knepley Not Collective 51217cd05799SMatthew G. Knepley 51227cd05799SMatthew G. Knepley Input Parameters: 51237cd05799SMatthew G. Knepley . dm - The DMPlex object 51247cd05799SMatthew G. Knepley 51257cd05799SMatthew G. Knepley Output Parameter: 5126b5a892a1SMatthew G. Knepley . coneOrientations - The array of cone orientations for all points 51277cd05799SMatthew G. Knepley 51287cd05799SMatthew G. Knepley Level: developer 51297cd05799SMatthew G. Knepley 5130b5a892a1SMatthew G. Knepley Notes: 5131b5a892a1SMatthew G. Knepley The PetscSection returned by DMPlexGetConeSection() partitions coneOrientations into cone orientations of particular points as returned by DMPlexGetConeOrientation(). 5132b5a892a1SMatthew G. Knepley 5133b5a892a1SMatthew G. Knepley The meaning of coneOrientations values is detailed in DMPlexGetConeOrientation(). 5134b5a892a1SMatthew G. Knepley 5135db781477SPatrick Sanan .seealso: `DMPlexGetConeSection()`, `DMPlexGetConeOrientation()` 51367cd05799SMatthew G. Knepley @*/ 5137a6dfd86eSKarl Rupp PetscErrorCode DMPlexGetConeOrientations(DM dm, PetscInt *coneOrientations[]) 5138a6dfd86eSKarl Rupp { 5139552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 5140552f7358SJed Brown 5141552f7358SJed Brown PetscFunctionBegin; 5142552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5143552f7358SJed Brown if (coneOrientations) *coneOrientations = mesh->coneOrientations; 5144552f7358SJed Brown PetscFunctionReturn(0); 5145552f7358SJed Brown } 5146552f7358SJed Brown 5147552f7358SJed Brown /******************************** FEM Support **********************************/ 5148552f7358SJed Brown 51499e8305c2SJed Brown /* 51509e8305c2SJed Brown Returns number of components and tensor degree for the field. For interpolated meshes, line should be a point 51519e8305c2SJed Brown representing a line in the section. 51529e8305c2SJed Brown */ 51539e8305c2SJed Brown static PetscErrorCode PetscSectionFieldGetTensorDegree_Private(PetscSection section,PetscInt field,PetscInt line,PetscBool vertexchart,PetscInt *Nc,PetscInt *k) 51549e8305c2SJed Brown { 51559e8305c2SJed Brown PetscFunctionBeginHot; 51569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, field, Nc)); 5157a433471fSStefano Zampini if (line < 0) { 5158a433471fSStefano Zampini *k = 0; 5159a433471fSStefano Zampini *Nc = 0; 5160a433471fSStefano Zampini } else if (vertexchart) { /* If we only have a vertex chart, we must have degree k=1 */ 51619e8305c2SJed Brown *k = 1; 51629e8305c2SJed Brown } else { /* Assume the full interpolated mesh is in the chart; lines in particular */ 51639e8305c2SJed Brown /* An order k SEM disc has k-1 dofs on an edge */ 51649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, line, field, k)); 51659e8305c2SJed Brown *k = *k / *Nc + 1; 51669e8305c2SJed Brown } 51679e8305c2SJed Brown PetscFunctionReturn(0); 51689e8305c2SJed Brown } 51699e8305c2SJed Brown 5170a4355906SMatthew Knepley /*@ 5171bc1eb3faSJed Brown 5172bc1eb3faSJed Brown DMPlexSetClosurePermutationTensor - Create a permutation from the default (BFS) point ordering in the closure, to a 5173bc1eb3faSJed Brown lexicographic ordering over the tensor product cell (i.e., line, quad, hex, etc.), and set this permutation in the 51741bb6d2a8SBarry Smith section provided (or the section of the DM). 5175a4355906SMatthew Knepley 5176a4355906SMatthew Knepley Input Parameters: 5177a4355906SMatthew Knepley + dm - The DM 5178a4355906SMatthew Knepley . point - Either a cell (highest dim point) or an edge (dim 1 point), or PETSC_DETERMINE 5179a4355906SMatthew Knepley - section - The PetscSection to reorder, or NULL for the default section 5180a4355906SMatthew Knepley 5181a4355906SMatthew Knepley Note: The point is used to determine the number of dofs/field on an edge. For SEM, this is related to the polynomial 5182a4355906SMatthew Knepley degree of the basis. 5183a4355906SMatthew Knepley 5184bc1eb3faSJed Brown Example: 5185bc1eb3faSJed Brown A typical interpolated single-quad mesh might order points as 5186bc1eb3faSJed Brown .vb 5187bc1eb3faSJed Brown [c0, v1, v2, v3, v4, e5, e6, e7, e8] 5188bc1eb3faSJed Brown 5189bc1eb3faSJed Brown v4 -- e6 -- v3 5190bc1eb3faSJed Brown | | 5191bc1eb3faSJed Brown e7 c0 e8 5192bc1eb3faSJed Brown | | 5193bc1eb3faSJed Brown v1 -- e5 -- v2 5194bc1eb3faSJed Brown .ve 5195bc1eb3faSJed Brown 5196bc1eb3faSJed Brown (There is no significance to the ordering described here.) The default section for a Q3 quad might typically assign 5197bc1eb3faSJed Brown dofs in the order of points, e.g., 5198bc1eb3faSJed Brown .vb 5199bc1eb3faSJed Brown c0 -> [0,1,2,3] 5200bc1eb3faSJed Brown v1 -> [4] 5201bc1eb3faSJed Brown ... 5202bc1eb3faSJed Brown e5 -> [8, 9] 5203bc1eb3faSJed Brown .ve 5204bc1eb3faSJed Brown 5205bc1eb3faSJed Brown which corresponds to the dofs 5206bc1eb3faSJed Brown .vb 5207bc1eb3faSJed Brown 6 10 11 7 5208bc1eb3faSJed Brown 13 2 3 15 5209bc1eb3faSJed Brown 12 0 1 14 5210bc1eb3faSJed Brown 4 8 9 5 5211bc1eb3faSJed Brown .ve 5212bc1eb3faSJed Brown 5213bc1eb3faSJed Brown The closure in BFS ordering works through height strata (cells, edges, vertices) to produce the ordering 5214bc1eb3faSJed Brown .vb 5215bc1eb3faSJed Brown 0 1 2 3 8 9 14 15 11 10 13 12 4 5 7 6 5216bc1eb3faSJed Brown .ve 5217bc1eb3faSJed Brown 5218bc1eb3faSJed Brown After calling DMPlexSetClosurePermutationTensor(), the closure will be ordered lexicographically, 5219bc1eb3faSJed Brown .vb 5220bc1eb3faSJed Brown 4 8 9 5 12 0 1 14 13 2 3 15 6 10 11 7 5221bc1eb3faSJed Brown .ve 5222bc1eb3faSJed Brown 5223a4355906SMatthew Knepley Level: developer 5224a4355906SMatthew Knepley 5225db781477SPatrick Sanan .seealso: `DMGetLocalSection()`, `PetscSectionSetClosurePermutation()`, `DMSetGlobalSection()` 5226a4355906SMatthew Knepley @*/ 5227bc1eb3faSJed Brown PetscErrorCode DMPlexSetClosurePermutationTensor(DM dm, PetscInt point, PetscSection section) 52283194fc30SMatthew G. Knepley { 52297391a63aSMatthew G. Knepley DMLabel label; 5230bb197d40SJed Brown PetscInt dim, depth = -1, eStart = -1, Nf; 52319e8305c2SJed Brown PetscBool vertexchart; 52323194fc30SMatthew G. Knepley 52333194fc30SMatthew G. Knepley PetscFunctionBegin; 52349566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 5235a433471fSStefano Zampini if (dim < 1) PetscFunctionReturn(0); 5236a433471fSStefano Zampini if (point < 0) { 5237a433471fSStefano Zampini PetscInt sStart,sEnd; 5238a433471fSStefano Zampini 52399566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 1, &sStart, &sEnd)); 5240a433471fSStefano Zampini point = sEnd-sStart ? sStart : point; 5241a433471fSStefano Zampini } 52429566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 52439566063dSJacob Faibussowitsch if (point >= 0) PetscCall(DMLabelGetValue(label, point, &depth)); 52449566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 52457391a63aSMatthew G. Knepley if (depth == 1) {eStart = point;} 52467391a63aSMatthew G. Knepley else if (depth == dim) { 52477391a63aSMatthew G. Knepley const PetscInt *cone; 52487391a63aSMatthew G. Knepley 52499566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 5250d4e6627bSStefano Zampini if (dim == 2) eStart = cone[0]; 5251d4e6627bSStefano Zampini else if (dim == 3) { 5252d4e6627bSStefano Zampini const PetscInt *cone2; 52539566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[0], &cone2)); 5254d4e6627bSStefano Zampini eStart = cone2[0]; 525563a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " of depth %" PetscInt_FMT " cannot be used to bootstrap spectral ordering for dim %" PetscInt_FMT, point, depth, dim); 525663a3b9bcSJacob Faibussowitsch } else PetscCheck(depth < 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " of depth %" PetscInt_FMT " cannot be used to bootstrap spectral ordering for dim %" PetscInt_FMT, point, depth, dim); 52579e8305c2SJed Brown { /* Determine whether the chart covers all points or just vertices. */ 52589e8305c2SJed Brown PetscInt pStart,pEnd,cStart,cEnd; 52599566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,0,&pStart,&pEnd)); 52609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section,&cStart,&cEnd)); 5261796d0a68SJed Brown if (pStart == cStart && pEnd == cEnd) vertexchart = PETSC_TRUE; /* Only vertices are in the chart */ 5262796d0a68SJed Brown else if (cStart <= point && point < cEnd) vertexchart = PETSC_FALSE; /* Some interpolated points exist in the chart */ 5263796d0a68SJed Brown else vertexchart = PETSC_TRUE; /* Some interpolated points are not in chart; assume dofs only at cells and vertices */ 52649e8305c2SJed Brown } 52659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 5266bb197d40SJed Brown for (PetscInt d=1; d<=dim; d++) { 5267bb197d40SJed Brown PetscInt k, f, Nc, c, i, j, size = 0, offset = 0, foffset = 0; 5268bb197d40SJed Brown PetscInt *perm; 5269bb197d40SJed Brown 52703194fc30SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 52719566063dSJacob Faibussowitsch PetscCall(PetscSectionFieldGetTensorDegree_Private(section,f,eStart,vertexchart,&Nc,&k)); 5272bb197d40SJed Brown size += PetscPowInt(k+1, d)*Nc; 52733194fc30SMatthew G. Knepley } 52749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &perm)); 52753194fc30SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5276bb197d40SJed Brown switch (d) { 5277babf31e0SJed Brown case 1: 52789566063dSJacob Faibussowitsch PetscCall(PetscSectionFieldGetTensorDegree_Private(section,f,eStart,vertexchart,&Nc,&k)); 5279babf31e0SJed Brown /* 5280babf31e0SJed Brown Original ordering is [ edge of length k-1; vtx0; vtx1 ] 5281babf31e0SJed Brown We want [ vtx0; edge of length k-1; vtx1 ] 5282babf31e0SJed Brown */ 5283babf31e0SJed Brown for (c=0; c<Nc; c++,offset++) perm[offset] = (k-1)*Nc + c + foffset; 5284babf31e0SJed Brown for (i=0; i<k-1; i++) for (c=0; c<Nc; c++,offset++) perm[offset] = i*Nc + c + foffset; 5285babf31e0SJed Brown for (c=0; c<Nc; c++,offset++) perm[offset] = k*Nc + c + foffset; 5286babf31e0SJed Brown foffset = offset; 5287babf31e0SJed Brown break; 528889eabcffSMatthew G. Knepley case 2: 52893194fc30SMatthew G. Knepley /* The original quad closure is oriented clockwise, {f, e_b, e_r, e_t, e_l, v_lb, v_rb, v_tr, v_tl} */ 52909566063dSJacob Faibussowitsch PetscCall(PetscSectionFieldGetTensorDegree_Private(section,f,eStart,vertexchart,&Nc,&k)); 52913194fc30SMatthew G. Knepley /* The SEM order is 52923194fc30SMatthew G. Knepley 52933194fc30SMatthew G. Knepley v_lb, {e_b}, v_rb, 529489eabcffSMatthew G. Knepley e^{(k-1)-i}_l, {f^{i*(k-1)}}, e^i_r, 52953194fc30SMatthew G. Knepley v_lt, reverse {e_t}, v_rt 52963194fc30SMatthew G. Knepley */ 52973194fc30SMatthew G. Knepley { 52983194fc30SMatthew G. Knepley const PetscInt of = 0; 52993194fc30SMatthew G. Knepley const PetscInt oeb = of + PetscSqr(k-1); 53003194fc30SMatthew G. Knepley const PetscInt oer = oeb + (k-1); 53013194fc30SMatthew G. Knepley const PetscInt oet = oer + (k-1); 53023194fc30SMatthew G. Knepley const PetscInt oel = oet + (k-1); 53033194fc30SMatthew G. Knepley const PetscInt ovlb = oel + (k-1); 53043194fc30SMatthew G. Knepley const PetscInt ovrb = ovlb + 1; 53053194fc30SMatthew G. Knepley const PetscInt ovrt = ovrb + 1; 53063194fc30SMatthew G. Knepley const PetscInt ovlt = ovrt + 1; 53073194fc30SMatthew G. Knepley PetscInt o; 53083194fc30SMatthew G. Knepley 53093194fc30SMatthew G. Knepley /* bottom */ 53103194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovlb*Nc + c + foffset; 53113194fc30SMatthew G. Knepley for (o = oeb; o < oer; ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 53123194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovrb*Nc + c + foffset; 53133194fc30SMatthew G. Knepley /* middle */ 53143194fc30SMatthew G. Knepley for (i = 0; i < k-1; ++i) { 53153194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oel+(k-2)-i)*Nc + c + foffset; 53163194fc30SMatthew G. Knepley for (o = of+(k-1)*i; o < of+(k-1)*(i+1); ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 53173194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oer+i)*Nc + c + foffset; 53183194fc30SMatthew G. Knepley } 53193194fc30SMatthew G. Knepley /* top */ 53203194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovlt*Nc + c + foffset; 53213194fc30SMatthew G. Knepley for (o = oel-1; o >= oet; --o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 53223194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovrt*Nc + c + foffset; 53233194fc30SMatthew G. Knepley foffset = offset; 53243194fc30SMatthew G. Knepley } 532589eabcffSMatthew G. Knepley break; 532689eabcffSMatthew G. Knepley case 3: 532789eabcffSMatthew G. Knepley /* The original hex closure is 532889eabcffSMatthew G. Knepley 532989eabcffSMatthew G. Knepley {c, 533089eabcffSMatthew G. Knepley f_b, f_t, f_f, f_b, f_r, f_l, 533189eabcffSMatthew G. Knepley e_bl, e_bb, e_br, e_bf, e_tf, e_tr, e_tb, e_tl, e_rf, e_lf, e_lb, e_rb, 533289eabcffSMatthew G. Knepley v_blf, v_blb, v_brb, v_brf, v_tlf, v_trf, v_trb, v_tlb} 533389eabcffSMatthew G. Knepley */ 53349566063dSJacob Faibussowitsch PetscCall(PetscSectionFieldGetTensorDegree_Private(section,f,eStart,vertexchart,&Nc,&k)); 533589eabcffSMatthew G. Knepley /* The SEM order is 533689eabcffSMatthew G. Knepley Bottom Slice 533789eabcffSMatthew G. Knepley v_blf, {e^{(k-1)-n}_bf}, v_brf, 533889eabcffSMatthew G. Knepley e^{i}_bl, f^{n*(k-1)+(k-1)-i}_b, e^{(k-1)-i}_br, 533989eabcffSMatthew G. Knepley v_blb, {e_bb}, v_brb, 534089eabcffSMatthew G. Knepley 534189eabcffSMatthew G. Knepley Middle Slice (j) 534289eabcffSMatthew G. Knepley {e^{(k-1)-j}_lf}, {f^{j*(k-1)+n}_f}, e^j_rf, 534389eabcffSMatthew G. Knepley f^{i*(k-1)+j}_l, {c^{(j*(k-1) + i)*(k-1)+n}_t}, f^{j*(k-1)+i}_r, 534489eabcffSMatthew G. Knepley e^j_lb, {f^{j*(k-1)+(k-1)-n}_b}, e^{(k-1)-j}_rb, 534589eabcffSMatthew G. Knepley 534689eabcffSMatthew G. Knepley Top Slice 534789eabcffSMatthew G. Knepley v_tlf, {e_tf}, v_trf, 534889eabcffSMatthew G. Knepley e^{(k-1)-i}_tl, {f^{i*(k-1)}_t}, e^{i}_tr, 534989eabcffSMatthew G. Knepley v_tlb, {e^{(k-1)-n}_tb}, v_trb, 535089eabcffSMatthew G. Knepley */ 535189eabcffSMatthew G. Knepley { 535289eabcffSMatthew G. Knepley const PetscInt oc = 0; 535389eabcffSMatthew G. Knepley const PetscInt ofb = oc + PetscSqr(k-1)*(k-1); 535489eabcffSMatthew G. Knepley const PetscInt oft = ofb + PetscSqr(k-1); 535589eabcffSMatthew G. Knepley const PetscInt off = oft + PetscSqr(k-1); 535689eabcffSMatthew G. Knepley const PetscInt ofk = off + PetscSqr(k-1); 535789eabcffSMatthew G. Knepley const PetscInt ofr = ofk + PetscSqr(k-1); 535889eabcffSMatthew G. Knepley const PetscInt ofl = ofr + PetscSqr(k-1); 535989eabcffSMatthew G. Knepley const PetscInt oebl = ofl + PetscSqr(k-1); 536089eabcffSMatthew G. Knepley const PetscInt oebb = oebl + (k-1); 536189eabcffSMatthew G. Knepley const PetscInt oebr = oebb + (k-1); 536289eabcffSMatthew G. Knepley const PetscInt oebf = oebr + (k-1); 536389eabcffSMatthew G. Knepley const PetscInt oetf = oebf + (k-1); 536489eabcffSMatthew G. Knepley const PetscInt oetr = oetf + (k-1); 536589eabcffSMatthew G. Knepley const PetscInt oetb = oetr + (k-1); 536689eabcffSMatthew G. Knepley const PetscInt oetl = oetb + (k-1); 536789eabcffSMatthew G. Knepley const PetscInt oerf = oetl + (k-1); 536889eabcffSMatthew G. Knepley const PetscInt oelf = oerf + (k-1); 536989eabcffSMatthew G. Knepley const PetscInt oelb = oelf + (k-1); 537089eabcffSMatthew G. Knepley const PetscInt oerb = oelb + (k-1); 537189eabcffSMatthew G. Knepley const PetscInt ovblf = oerb + (k-1); 537289eabcffSMatthew G. Knepley const PetscInt ovblb = ovblf + 1; 537389eabcffSMatthew G. Knepley const PetscInt ovbrb = ovblb + 1; 537489eabcffSMatthew G. Knepley const PetscInt ovbrf = ovbrb + 1; 537589eabcffSMatthew G. Knepley const PetscInt ovtlf = ovbrf + 1; 537689eabcffSMatthew G. Knepley const PetscInt ovtrf = ovtlf + 1; 537789eabcffSMatthew G. Knepley const PetscInt ovtrb = ovtrf + 1; 537889eabcffSMatthew G. Knepley const PetscInt ovtlb = ovtrb + 1; 537989eabcffSMatthew G. Knepley PetscInt o, n; 538089eabcffSMatthew G. Knepley 538189eabcffSMatthew G. Knepley /* Bottom Slice */ 538289eabcffSMatthew G. Knepley /* bottom */ 538389eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovblf*Nc + c + foffset; 538489eabcffSMatthew G. Knepley for (o = oetf-1; o >= oebf; --o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 538589eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovbrf*Nc + c + foffset; 538689eabcffSMatthew G. Knepley /* middle */ 538789eabcffSMatthew G. Knepley for (i = 0; i < k-1; ++i) { 538889eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oebl+i)*Nc + c + foffset; 5389316b7f87SMax Rietmann for (n = 0; n < k-1; ++n) {o = ofb+n*(k-1)+i; for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset;} 539089eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oebr+(k-2)-i)*Nc + c + foffset; 53913194fc30SMatthew G. Knepley } 539289eabcffSMatthew G. Knepley /* top */ 539389eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovblb*Nc + c + foffset; 539489eabcffSMatthew G. Knepley for (o = oebb; o < oebr; ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 539589eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovbrb*Nc + c + foffset; 539689eabcffSMatthew G. Knepley 539789eabcffSMatthew G. Knepley /* Middle Slice */ 539889eabcffSMatthew G. Knepley for (j = 0; j < k-1; ++j) { 539989eabcffSMatthew G. Knepley /* bottom */ 540089eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oelf+(k-2)-j)*Nc + c + foffset; 540189eabcffSMatthew G. Knepley for (o = off+j*(k-1); o < off+(j+1)*(k-1); ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 540289eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oerf+j)*Nc + c + foffset; 540389eabcffSMatthew G. Knepley /* middle */ 540489eabcffSMatthew G. Knepley for (i = 0; i < k-1; ++i) { 540589eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (ofl+i*(k-1)+j)*Nc + c + foffset; 540689eabcffSMatthew G. Knepley for (n = 0; n < k-1; ++n) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oc+(j*(k-1)+i)*(k-1)+n)*Nc + c + foffset; 540789eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (ofr+j*(k-1)+i)*Nc + c + foffset; 540889eabcffSMatthew G. Knepley } 540989eabcffSMatthew G. Knepley /* top */ 541089eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oelb+j)*Nc + c + foffset; 541189eabcffSMatthew G. Knepley for (o = ofk+j*(k-1)+(k-2); o >= ofk+j*(k-1); --o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 541289eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oerb+(k-2)-j)*Nc + c + foffset; 541389eabcffSMatthew G. Knepley } 541489eabcffSMatthew G. Knepley 541589eabcffSMatthew G. Knepley /* Top Slice */ 541689eabcffSMatthew G. Knepley /* bottom */ 541789eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovtlf*Nc + c + foffset; 541889eabcffSMatthew G. Knepley for (o = oetf; o < oetr; ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 541989eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovtrf*Nc + c + foffset; 542089eabcffSMatthew G. Knepley /* middle */ 542189eabcffSMatthew G. Knepley for (i = 0; i < k-1; ++i) { 542289eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oetl+(k-2)-i)*Nc + c + foffset; 542389eabcffSMatthew G. Knepley for (n = 0; n < k-1; ++n) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oft+i*(k-1)+n)*Nc + c + foffset; 542489eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oetr+i)*Nc + c + foffset; 542589eabcffSMatthew G. Knepley } 542689eabcffSMatthew G. Knepley /* top */ 542789eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovtlb*Nc + c + foffset; 542889eabcffSMatthew G. Knepley for (o = oetl-1; o >= oetb; --o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 542989eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovtrb*Nc + c + foffset; 543089eabcffSMatthew G. Knepley 543189eabcffSMatthew G. Knepley foffset = offset; 543289eabcffSMatthew G. Knepley } 543389eabcffSMatthew G. Knepley break; 543463a3b9bcSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "No spectral ordering for dimension %" PetscInt_FMT, d); 543589eabcffSMatthew G. Knepley } 543689eabcffSMatthew G. Knepley } 543763a3b9bcSJacob Faibussowitsch PetscCheck(offset == size,PetscObjectComm((PetscObject) dm), PETSC_ERR_PLIB, "Number of permutation entries %" PetscInt_FMT " != %" PetscInt_FMT, offset, size); 54383194fc30SMatthew G. Knepley /* Check permutation */ 54393194fc30SMatthew G. Knepley { 54403194fc30SMatthew G. Knepley PetscInt *check; 54413194fc30SMatthew G. Knepley 54429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &check)); 54431dca8a05SBarry Smith for (i = 0; i < size; ++i) { 54441dca8a05SBarry Smith check[i] = -1; 54451dca8a05SBarry Smith PetscCheck(perm[i] >= 0 && perm[i] < size,PetscObjectComm((PetscObject) dm), PETSC_ERR_PLIB, "Invalid permutation index p[%" PetscInt_FMT "] = %" PetscInt_FMT, i, perm[i]); 54461dca8a05SBarry Smith } 54473194fc30SMatthew G. Knepley for (i = 0; i < size; ++i) check[perm[i]] = i; 54481dca8a05SBarry Smith for (i = 0; i < size; ++i) PetscCheck(check[i] >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_PLIB, "Missing permutation index %" PetscInt_FMT, i); 54499566063dSJacob Faibussowitsch PetscCall(PetscFree(check)); 54503194fc30SMatthew G. Knepley } 54519566063dSJacob Faibussowitsch PetscCall(PetscSectionSetClosurePermutation_Internal(section, (PetscObject) dm, d, size, PETSC_OWN_POINTER, perm)); 5452a05c9aa3SJed Brown if (d == dim) { // Add permutation for localized (in case this is a coordinate DM) 5453a05c9aa3SJed Brown PetscInt *loc_perm; 54549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size*2, &loc_perm)); 5455a05c9aa3SJed Brown for (PetscInt i=0; i<size; i++) { 5456a05c9aa3SJed Brown loc_perm[i] = perm[i]; 5457a05c9aa3SJed Brown loc_perm[size+i] = size + perm[i]; 5458a05c9aa3SJed Brown } 54599566063dSJacob Faibussowitsch PetscCall(PetscSectionSetClosurePermutation_Internal(section, (PetscObject) dm, d, size*2, PETSC_OWN_POINTER, loc_perm)); 5460a05c9aa3SJed Brown } 5461bb197d40SJed Brown } 54623194fc30SMatthew G. Knepley PetscFunctionReturn(0); 54633194fc30SMatthew G. Knepley } 54643194fc30SMatthew G. Knepley 5465e071409bSToby Isaac PetscErrorCode DMPlexGetPointDualSpaceFEM(DM dm, PetscInt point, PetscInt field, PetscDualSpace *dspace) 5466e071409bSToby Isaac { 5467e071409bSToby Isaac PetscDS prob; 5468e071409bSToby Isaac PetscInt depth, Nf, h; 5469e071409bSToby Isaac DMLabel label; 5470e071409bSToby Isaac 5471e071409bSToby Isaac PetscFunctionBeginHot; 54729566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 5473e071409bSToby Isaac Nf = prob->Nf; 5474e071409bSToby Isaac label = dm->depthLabel; 5475e071409bSToby Isaac *dspace = NULL; 5476e071409bSToby Isaac if (field < Nf) { 5477e071409bSToby Isaac PetscObject disc = prob->disc[field]; 5478e071409bSToby Isaac 5479e071409bSToby Isaac if (disc->classid == PETSCFE_CLASSID) { 5480e071409bSToby Isaac PetscDualSpace dsp; 5481e071409bSToby Isaac 54829566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace((PetscFE)disc,&dsp)); 54839566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label,&depth)); 54849566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label,point,&h)); 5485e071409bSToby Isaac h = depth - 1 - h; 5486e071409bSToby Isaac if (h) { 54879566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetHeightSubspace(dsp,h,dspace)); 5488e071409bSToby Isaac } else { 5489e071409bSToby Isaac *dspace = dsp; 5490e071409bSToby Isaac } 5491e071409bSToby Isaac } 5492e071409bSToby Isaac } 5493e071409bSToby Isaac PetscFunctionReturn(0); 5494e071409bSToby Isaac } 5495e071409bSToby Isaac 54969fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexVecGetClosure_Depth1_Static(DM dm, PetscSection section, Vec v, PetscInt point, PetscInt *csize, PetscScalar *values[]) 5497a6dfd86eSKarl Rupp { 5498552f7358SJed Brown PetscScalar *array, *vArray; 5499d9917b9dSMatthew G. Knepley const PetscInt *cone, *coneO; 55001a271a75SMatthew G. Knepley PetscInt pStart, pEnd, p, numPoints, size = 0, offset = 0; 5501552f7358SJed Brown 55021b406b76SMatthew G. Knepley PetscFunctionBeginHot; 55039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 55049566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &numPoints)); 55059566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 55069566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &coneO)); 55073f7cbbe7SMatthew G. Knepley if (!values || !*values) { 55089df71ca4SMatthew G. Knepley if ((point >= pStart) && (point < pEnd)) { 55099df71ca4SMatthew G. Knepley PetscInt dof; 5510d9917b9dSMatthew G. Knepley 55119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 55129df71ca4SMatthew G. Knepley size += dof; 55139df71ca4SMatthew G. Knepley } 55149df71ca4SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 55159df71ca4SMatthew G. Knepley const PetscInt cp = cone[p]; 55162a3aaacfSMatthew G. Knepley PetscInt dof; 55175a1bb5cfSMatthew G. Knepley 55185a1bb5cfSMatthew G. Knepley if ((cp < pStart) || (cp >= pEnd)) continue; 55199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, cp, &dof)); 55205a1bb5cfSMatthew G. Knepley size += dof; 55215a1bb5cfSMatthew G. Knepley } 55223f7cbbe7SMatthew G. Knepley if (!values) { 55233f7cbbe7SMatthew G. Knepley if (csize) *csize = size; 55243f7cbbe7SMatthew G. Knepley PetscFunctionReturn(0); 55253f7cbbe7SMatthew G. Knepley } 55269566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, size, MPIU_SCALAR, &array)); 5527982e9ed1SMatthew G. Knepley } else { 5528982e9ed1SMatthew G. Knepley array = *values; 5529982e9ed1SMatthew G. Knepley } 55309df71ca4SMatthew G. Knepley size = 0; 55319566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &vArray)); 55329df71ca4SMatthew G. Knepley if ((point >= pStart) && (point < pEnd)) { 55339df71ca4SMatthew G. Knepley PetscInt dof, off, d; 55349df71ca4SMatthew G. Knepley PetscScalar *varr; 5535d9917b9dSMatthew G. Knepley 55369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 55379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, point, &off)); 55389df71ca4SMatthew G. Knepley varr = &vArray[off]; 55391a271a75SMatthew G. Knepley for (d = 0; d < dof; ++d, ++offset) { 55401a271a75SMatthew G. Knepley array[offset] = varr[d]; 55419df71ca4SMatthew G. Knepley } 55429df71ca4SMatthew G. Knepley size += dof; 55439df71ca4SMatthew G. Knepley } 55449df71ca4SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 55459df71ca4SMatthew G. Knepley const PetscInt cp = cone[p]; 55469df71ca4SMatthew G. Knepley PetscInt o = coneO[p]; 55475a1bb5cfSMatthew G. Knepley PetscInt dof, off, d; 55485a1bb5cfSMatthew G. Knepley PetscScalar *varr; 55495a1bb5cfSMatthew G. Knepley 555052ed52e8SMatthew G. Knepley if ((cp < pStart) || (cp >= pEnd)) continue; 55519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, cp, &dof)); 55529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, cp, &off)); 55535a1bb5cfSMatthew G. Knepley varr = &vArray[off]; 55545a1bb5cfSMatthew G. Knepley if (o >= 0) { 55551a271a75SMatthew G. Knepley for (d = 0; d < dof; ++d, ++offset) { 55561a271a75SMatthew G. Knepley array[offset] = varr[d]; 55575a1bb5cfSMatthew G. Knepley } 55585a1bb5cfSMatthew G. Knepley } else { 55591a271a75SMatthew G. Knepley for (d = dof-1; d >= 0; --d, ++offset) { 55601a271a75SMatthew G. Knepley array[offset] = varr[d]; 55615a1bb5cfSMatthew G. Knepley } 55625a1bb5cfSMatthew G. Knepley } 55639df71ca4SMatthew G. Knepley size += dof; 55645a1bb5cfSMatthew G. Knepley } 55659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &vArray)); 55669df71ca4SMatthew G. Knepley if (!*values) { 55675a1bb5cfSMatthew G. Knepley if (csize) *csize = size; 55685a1bb5cfSMatthew G. Knepley *values = array; 55699df71ca4SMatthew G. Knepley } else { 557063a3b9bcSJacob Faibussowitsch PetscCheck(size <= *csize,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Size of input array %" PetscInt_FMT " < actual size %" PetscInt_FMT, *csize, size); 55718c312ff3SMatthew G. Knepley *csize = size; 55729df71ca4SMatthew G. Knepley } 55735a1bb5cfSMatthew G. Knepley PetscFunctionReturn(0); 55745a1bb5cfSMatthew G. Knepley } 5575d9917b9dSMatthew G. Knepley 557627f02ce8SMatthew G. Knepley /* Compress out points not in the section */ 55779fbee547SJacob Faibussowitsch static inline PetscErrorCode CompressPoints_Private(PetscSection section, PetscInt *numPoints, PetscInt points[]) 557827f02ce8SMatthew G. Knepley { 557927f02ce8SMatthew G. Knepley const PetscInt np = *numPoints; 558027f02ce8SMatthew G. Knepley PetscInt pStart, pEnd, p, q; 558127f02ce8SMatthew G. Knepley 55829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 558327f02ce8SMatthew G. Knepley for (p = 0, q = 0; p < np; ++p) { 558427f02ce8SMatthew G. Knepley const PetscInt r = points[p*2]; 558527f02ce8SMatthew G. Knepley if ((r >= pStart) && (r < pEnd)) { 558627f02ce8SMatthew G. Knepley points[q*2] = r; 558727f02ce8SMatthew G. Knepley points[q*2+1] = points[p*2+1]; 558827f02ce8SMatthew G. Knepley ++q; 558927f02ce8SMatthew G. Knepley } 559027f02ce8SMatthew G. Knepley } 559127f02ce8SMatthew G. Knepley *numPoints = q; 559227f02ce8SMatthew G. Knepley return 0; 559327f02ce8SMatthew G. Knepley } 559427f02ce8SMatthew G. Knepley 559597529cf3SJed Brown /* Compressed closure does not apply closure permutation */ 55961dc59d61SMatthew G. Knepley PetscErrorCode DMPlexGetCompressedClosure(DM dm, PetscSection section, PetscInt point, PetscInt *numPoints, PetscInt **points, PetscSection *clSec, IS *clPoints, const PetscInt **clp) 5597923c78e0SToby Isaac { 559827f02ce8SMatthew G. Knepley const PetscInt *cla = NULL; 5599923c78e0SToby Isaac PetscInt np, *pts = NULL; 5600923c78e0SToby Isaac 5601923c78e0SToby Isaac PetscFunctionBeginHot; 56029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureIndex(section, (PetscObject) dm, clSec, clPoints)); 560327f02ce8SMatthew G. Knepley if (*clPoints) { 5604923c78e0SToby Isaac PetscInt dof, off; 5605923c78e0SToby Isaac 56069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(*clSec, point, &dof)); 56079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(*clSec, point, &off)); 56089566063dSJacob Faibussowitsch PetscCall(ISGetIndices(*clPoints, &cla)); 5609923c78e0SToby Isaac np = dof/2; 5610923c78e0SToby Isaac pts = (PetscInt *) &cla[off]; 561127f02ce8SMatthew G. Knepley } else { 56129566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &np, &pts)); 56139566063dSJacob Faibussowitsch PetscCall(CompressPoints_Private(section, &np, pts)); 5614923c78e0SToby Isaac } 5615923c78e0SToby Isaac *numPoints = np; 5616923c78e0SToby Isaac *points = pts; 5617923c78e0SToby Isaac *clp = cla; 5618923c78e0SToby Isaac PetscFunctionReturn(0); 5619923c78e0SToby Isaac } 5620923c78e0SToby Isaac 56211dc59d61SMatthew G. Knepley PetscErrorCode DMPlexRestoreCompressedClosure(DM dm, PetscSection section, PetscInt point, PetscInt *numPoints, PetscInt **points, PetscSection *clSec, IS *clPoints, const PetscInt **clp) 5622923c78e0SToby Isaac { 5623923c78e0SToby Isaac PetscFunctionBeginHot; 5624923c78e0SToby Isaac if (!*clPoints) { 56259566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, numPoints, points)); 5626923c78e0SToby Isaac } else { 56279566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(*clPoints, clp)); 5628923c78e0SToby Isaac } 5629923c78e0SToby Isaac *numPoints = 0; 5630923c78e0SToby Isaac *points = NULL; 5631923c78e0SToby Isaac *clSec = NULL; 5632923c78e0SToby Isaac *clPoints = NULL; 5633923c78e0SToby Isaac *clp = NULL; 5634923c78e0SToby Isaac PetscFunctionReturn(0); 5635923c78e0SToby Isaac } 5636923c78e0SToby Isaac 56379fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexVecGetClosure_Static(DM dm, PetscSection section, PetscInt numPoints, const PetscInt points[], const PetscInt clperm[], const PetscScalar vArray[], PetscInt *size, PetscScalar array[]) 56381a271a75SMatthew G. Knepley { 56391a271a75SMatthew G. Knepley PetscInt offset = 0, p; 564097e99dd9SToby Isaac const PetscInt **perms = NULL; 564197e99dd9SToby Isaac const PetscScalar **flips = NULL; 56421a271a75SMatthew G. Knepley 56431a271a75SMatthew G. Knepley PetscFunctionBeginHot; 5644fe02ba77SJed Brown *size = 0; 56459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(section,numPoints,points,&perms,&flips)); 564697e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 564797e99dd9SToby Isaac const PetscInt point = points[2*p]; 564897e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 564997e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 56501a271a75SMatthew G. Knepley PetscInt dof, off, d; 56511a271a75SMatthew G. Knepley const PetscScalar *varr; 56521a271a75SMatthew G. Knepley 56539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 56549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, point, &off)); 56551a271a75SMatthew G. Knepley varr = &vArray[off]; 565697e99dd9SToby Isaac if (clperm) { 565797e99dd9SToby Isaac if (perm) { 565897e99dd9SToby Isaac for (d = 0; d < dof; d++) array[clperm[offset + perm[d]]] = varr[d]; 56591a271a75SMatthew G. Knepley } else { 566097e99dd9SToby Isaac for (d = 0; d < dof; d++) array[clperm[offset + d ]] = varr[d]; 566197e99dd9SToby Isaac } 566297e99dd9SToby Isaac if (flip) { 566397e99dd9SToby Isaac for (d = 0; d < dof; d++) array[clperm[offset + d ]] *= flip[d]; 566497e99dd9SToby Isaac } 566597e99dd9SToby Isaac } else { 566697e99dd9SToby Isaac if (perm) { 566797e99dd9SToby Isaac for (d = 0; d < dof; d++) array[offset + perm[d]] = varr[d]; 566897e99dd9SToby Isaac } else { 566997e99dd9SToby Isaac for (d = 0; d < dof; d++) array[offset + d ] = varr[d]; 567097e99dd9SToby Isaac } 567197e99dd9SToby Isaac if (flip) { 567297e99dd9SToby Isaac for (d = 0; d < dof; d++) array[offset + d ] *= flip[d]; 56731a271a75SMatthew G. Knepley } 56741a271a75SMatthew G. Knepley } 567597e99dd9SToby Isaac offset += dof; 567697e99dd9SToby Isaac } 56779566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(section,numPoints,points,&perms,&flips)); 56781a271a75SMatthew G. Knepley *size = offset; 56791a271a75SMatthew G. Knepley PetscFunctionReturn(0); 56801a271a75SMatthew G. Knepley } 56811a271a75SMatthew G. Knepley 56829fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexVecGetClosure_Fields_Static(DM dm, PetscSection section, PetscInt numPoints, const PetscInt points[], PetscInt numFields, const PetscInt clperm[], const PetscScalar vArray[], PetscInt *size, PetscScalar array[]) 56831a271a75SMatthew G. Knepley { 56841a271a75SMatthew G. Knepley PetscInt offset = 0, f; 56851a271a75SMatthew G. Knepley 56861a271a75SMatthew G. Knepley PetscFunctionBeginHot; 5687fe02ba77SJed Brown *size = 0; 56881a271a75SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 568997e99dd9SToby Isaac PetscInt p; 569097e99dd9SToby Isaac const PetscInt **perms = NULL; 569197e99dd9SToby Isaac const PetscScalar **flips = NULL; 56921a271a75SMatthew G. Knepley 56939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 569497e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 569597e99dd9SToby Isaac const PetscInt point = points[2*p]; 569697e99dd9SToby Isaac PetscInt fdof, foff, b; 56971a271a75SMatthew G. Knepley const PetscScalar *varr; 569897e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 569997e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 57001a271a75SMatthew G. Knepley 57019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 57029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(section, point, f, &foff)); 57031a271a75SMatthew G. Knepley varr = &vArray[foff]; 570497e99dd9SToby Isaac if (clperm) { 570597e99dd9SToby Isaac if (perm) {for (b = 0; b < fdof; b++) {array[clperm[offset + perm[b]]] = varr[b];}} 570697e99dd9SToby Isaac else {for (b = 0; b < fdof; b++) {array[clperm[offset + b ]] = varr[b];}} 570797e99dd9SToby Isaac if (flip) {for (b = 0; b < fdof; b++) {array[clperm[offset + b ]] *= flip[b];}} 57081a271a75SMatthew G. Knepley } else { 570997e99dd9SToby Isaac if (perm) {for (b = 0; b < fdof; b++) {array[offset + perm[b]] = varr[b];}} 571097e99dd9SToby Isaac else {for (b = 0; b < fdof; b++) {array[offset + b ] = varr[b];}} 571197e99dd9SToby Isaac if (flip) {for (b = 0; b < fdof; b++) {array[offset + b ] *= flip[b];}} 57121a271a75SMatthew G. Knepley } 571397e99dd9SToby Isaac offset += fdof; 57141a271a75SMatthew G. Knepley } 57159566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 57161a271a75SMatthew G. Knepley } 57171a271a75SMatthew G. Knepley *size = offset; 57181a271a75SMatthew G. Knepley PetscFunctionReturn(0); 57191a271a75SMatthew G. Knepley } 57201a271a75SMatthew G. Knepley 5721552f7358SJed Brown /*@C 5722552f7358SJed Brown DMPlexVecGetClosure - Get an array of the values on the closure of 'point' 5723552f7358SJed Brown 5724552f7358SJed Brown Not collective 5725552f7358SJed Brown 5726552f7358SJed Brown Input Parameters: 5727552f7358SJed Brown + dm - The DM 5728552f7358SJed Brown . section - The section describing the layout in v, or NULL to use the default section 5729552f7358SJed Brown . v - The local vector 57306b867d5aSJose E. Roman - point - The point in the DM 5731552f7358SJed Brown 57326b867d5aSJose E. Roman Input/Output Parameters: 57336b867d5aSJose E. Roman + csize - The size of the input values array, or NULL; on output the number of values in the closure 57346b867d5aSJose E. Roman - values - An array to use for the values, or NULL to have it allocated automatically; 57356b867d5aSJose E. Roman if the user provided NULL, it is a borrowed array and should not be freed 573622c1ee49SMatthew G. Knepley 573722c1ee49SMatthew G. Knepley $ Note that DMPlexVecGetClosure/DMPlexVecRestoreClosure only allocates the values array if it set to NULL in the 573822c1ee49SMatthew G. Knepley $ calling function. This is because DMPlexVecGetClosure() is typically called in the inner loop of a Vec or Mat 573922c1ee49SMatthew G. Knepley $ assembly function, and a user may already have allocated storage for this operation. 574022c1ee49SMatthew G. Knepley $ 574122c1ee49SMatthew G. Knepley $ A typical use could be 574222c1ee49SMatthew G. Knepley $ 574322c1ee49SMatthew G. Knepley $ values = NULL; 57449566063dSJacob Faibussowitsch $ PetscCall(DMPlexVecGetClosure(dm, NULL, v, p, &clSize, &values)); 574522c1ee49SMatthew G. Knepley $ for (cl = 0; cl < clSize; ++cl) { 574622c1ee49SMatthew G. Knepley $ <Compute on closure> 574722c1ee49SMatthew G. Knepley $ } 57489566063dSJacob Faibussowitsch $ PetscCall(DMPlexVecRestoreClosure(dm, NULL, v, p, &clSize, &values)); 574922c1ee49SMatthew G. Knepley $ 575022c1ee49SMatthew G. Knepley $ or 575122c1ee49SMatthew G. Knepley $ 575222c1ee49SMatthew G. Knepley $ PetscMalloc1(clMaxSize, &values); 575322c1ee49SMatthew G. Knepley $ for (p = pStart; p < pEnd; ++p) { 575422c1ee49SMatthew G. Knepley $ clSize = clMaxSize; 57559566063dSJacob Faibussowitsch $ PetscCall(DMPlexVecGetClosure(dm, NULL, v, p, &clSize, &values)); 575622c1ee49SMatthew G. Knepley $ for (cl = 0; cl < clSize; ++cl) { 575722c1ee49SMatthew G. Knepley $ <Compute on closure> 575822c1ee49SMatthew G. Knepley $ } 575922c1ee49SMatthew G. Knepley $ } 576022c1ee49SMatthew G. Knepley $ PetscFree(values); 5761552f7358SJed Brown 5762552f7358SJed Brown Fortran Notes: 5763552f7358SJed Brown Since it returns an array, this routine is only available in Fortran 90, and you must 5764552f7358SJed Brown include petsc.h90 in your code. 5765552f7358SJed Brown 5766552f7358SJed Brown The csize argument is not present in the Fortran 90 binding since it is internal to the array. 5767552f7358SJed Brown 5768552f7358SJed Brown Level: intermediate 5769552f7358SJed Brown 5770db781477SPatrick Sanan .seealso `DMPlexVecRestoreClosure()`, `DMPlexVecSetClosure()`, `DMPlexMatSetClosure()` 5771552f7358SJed Brown @*/ 5772552f7358SJed Brown PetscErrorCode DMPlexVecGetClosure(DM dm, PetscSection section, Vec v, PetscInt point, PetscInt *csize, PetscScalar *values[]) 5773552f7358SJed Brown { 5774552f7358SJed Brown PetscSection clSection; 5775d9917b9dSMatthew G. Knepley IS clPoints; 5776552f7358SJed Brown PetscInt *points = NULL; 5777c459fbc1SJed Brown const PetscInt *clp, *perm; 5778c459fbc1SJed Brown PetscInt depth, numFields, numPoints, asize; 5779552f7358SJed Brown 5780d9917b9dSMatthew G. Knepley PetscFunctionBeginHot; 5781552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57829566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 57831a271a75SMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 57841a271a75SMatthew G. Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 3); 57859566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 57869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 5787552f7358SJed Brown if (depth == 1 && numFields < 2) { 57889566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure_Depth1_Static(dm, section, v, point, csize, values)); 5789552f7358SJed Brown PetscFunctionReturn(0); 5790552f7358SJed Brown } 57911a271a75SMatthew G. Knepley /* Get points */ 57929566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5793c459fbc1SJed Brown /* Get sizes */ 5794c459fbc1SJed Brown asize = 0; 5795c459fbc1SJed Brown for (PetscInt p = 0; p < numPoints*2; p += 2) { 5796c459fbc1SJed Brown PetscInt dof; 57979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[p], &dof)); 57981a271a75SMatthew G. Knepley asize += dof; 5799552f7358SJed Brown } 5800c459fbc1SJed Brown if (values) { 5801c459fbc1SJed Brown const PetscScalar *vArray; 5802c459fbc1SJed Brown PetscInt size; 5803c459fbc1SJed Brown 5804c459fbc1SJed Brown if (*values) { 580563a3b9bcSJacob Faibussowitsch PetscCheck(*csize >= asize,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided array size %" PetscInt_FMT " not sufficient to hold closure size %" PetscInt_FMT, *csize, asize); 58069566063dSJacob Faibussowitsch } else PetscCall(DMGetWorkArray(dm, asize, MPIU_SCALAR, values)); 58079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, (PetscObject) dm, depth, asize, &perm)); 58089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(v, &vArray)); 58091a271a75SMatthew G. Knepley /* Get values */ 58109566063dSJacob Faibussowitsch if (numFields > 0) PetscCall(DMPlexVecGetClosure_Fields_Static(dm, section, numPoints, points, numFields, perm, vArray, &size, *values)); 58119566063dSJacob Faibussowitsch else PetscCall(DMPlexVecGetClosure_Static(dm, section, numPoints, points, perm, vArray, &size, *values)); 581263a3b9bcSJacob Faibussowitsch PetscCheck(asize == size,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Section size %" PetscInt_FMT " does not match Vec closure size %" PetscInt_FMT, asize, size); 58131a271a75SMatthew G. Knepley /* Cleanup array */ 58149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(v, &vArray)); 5815d0f6b257SMatthew G. Knepley } 5816c459fbc1SJed Brown if (csize) *csize = asize; 5817c459fbc1SJed Brown /* Cleanup points */ 58189566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5819552f7358SJed Brown PetscFunctionReturn(0); 5820552f7358SJed Brown } 5821552f7358SJed Brown 5822e5c487bfSMatthew G. Knepley PetscErrorCode DMPlexVecGetClosureAtDepth_Internal(DM dm, PetscSection section, Vec v, PetscInt point, PetscInt depth, PetscInt *csize, PetscScalar *values[]) 5823e5c487bfSMatthew G. Knepley { 5824e5c487bfSMatthew G. Knepley DMLabel depthLabel; 5825e5c487bfSMatthew G. Knepley PetscSection clSection; 5826e5c487bfSMatthew G. Knepley IS clPoints; 5827e5c487bfSMatthew G. Knepley PetscScalar *array; 5828e5c487bfSMatthew G. Knepley const PetscScalar *vArray; 5829e5c487bfSMatthew G. Knepley PetscInt *points = NULL; 5830c459fbc1SJed Brown const PetscInt *clp, *perm = NULL; 5831c459fbc1SJed Brown PetscInt mdepth, numFields, numPoints, Np = 0, p, clsize, size; 5832e5c487bfSMatthew G. Knepley 5833e5c487bfSMatthew G. Knepley PetscFunctionBeginHot; 5834e5c487bfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58359566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 5836e5c487bfSMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 5837e5c487bfSMatthew G. Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 3); 58389566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &mdepth)); 58399566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 58409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 5841e5c487bfSMatthew G. Knepley if (mdepth == 1 && numFields < 2) { 58429566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure_Depth1_Static(dm, section, v, point, csize, values)); 5843e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 5844e5c487bfSMatthew G. Knepley } 5845e5c487bfSMatthew G. Knepley /* Get points */ 58469566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5847c459fbc1SJed Brown for (clsize=0,p=0; p<Np; p++) { 5848c459fbc1SJed Brown PetscInt dof; 58499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[2*p], &dof)); 5850c459fbc1SJed Brown clsize += dof; 5851c459fbc1SJed Brown } 58529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, (PetscObject) dm, depth, clsize, &perm)); 5853e5c487bfSMatthew G. Knepley /* Filter points */ 5854e5c487bfSMatthew G. Knepley for (p = 0; p < numPoints*2; p += 2) { 5855e5c487bfSMatthew G. Knepley PetscInt dep; 5856e5c487bfSMatthew G. Knepley 58579566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, points[p], &dep)); 5858e5c487bfSMatthew G. Knepley if (dep != depth) continue; 5859e5c487bfSMatthew G. Knepley points[Np*2+0] = points[p]; 5860e5c487bfSMatthew G. Knepley points[Np*2+1] = points[p+1]; 5861e5c487bfSMatthew G. Knepley ++Np; 5862e5c487bfSMatthew G. Knepley } 5863e5c487bfSMatthew G. Knepley /* Get array */ 5864e5c487bfSMatthew G. Knepley if (!values || !*values) { 5865e5c487bfSMatthew G. Knepley PetscInt asize = 0, dof; 5866e5c487bfSMatthew G. Knepley 5867e5c487bfSMatthew G. Knepley for (p = 0; p < Np*2; p += 2) { 58689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[p], &dof)); 5869e5c487bfSMatthew G. Knepley asize += dof; 5870e5c487bfSMatthew G. Knepley } 5871e5c487bfSMatthew G. Knepley if (!values) { 58729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5873e5c487bfSMatthew G. Knepley if (csize) *csize = asize; 5874e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 5875e5c487bfSMatthew G. Knepley } 58769566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, asize, MPIU_SCALAR, &array)); 5877e5c487bfSMatthew G. Knepley } else { 5878e5c487bfSMatthew G. Knepley array = *values; 5879e5c487bfSMatthew G. Knepley } 58809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(v, &vArray)); 5881e5c487bfSMatthew G. Knepley /* Get values */ 58829566063dSJacob Faibussowitsch if (numFields > 0) PetscCall(DMPlexVecGetClosure_Fields_Static(dm, section, Np, points, numFields, perm, vArray, &size, array)); 58839566063dSJacob Faibussowitsch else PetscCall(DMPlexVecGetClosure_Static(dm, section, Np, points, perm, vArray, &size, array)); 5884e5c487bfSMatthew G. Knepley /* Cleanup points */ 58859566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5886e5c487bfSMatthew G. Knepley /* Cleanup array */ 58879566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(v, &vArray)); 5888e5c487bfSMatthew G. Knepley if (!*values) { 5889e5c487bfSMatthew G. Knepley if (csize) *csize = size; 5890e5c487bfSMatthew G. Knepley *values = array; 5891e5c487bfSMatthew G. Knepley } else { 589263a3b9bcSJacob Faibussowitsch PetscCheck(size <= *csize,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Size of input array %" PetscInt_FMT " < actual size %" PetscInt_FMT, *csize, size); 5893e5c487bfSMatthew G. Knepley *csize = size; 5894e5c487bfSMatthew G. Knepley } 5895e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 5896e5c487bfSMatthew G. Knepley } 5897e5c487bfSMatthew G. Knepley 5898552f7358SJed Brown /*@C 5899552f7358SJed Brown DMPlexVecRestoreClosure - Restore the array of the values on the closure of 'point' 5900552f7358SJed Brown 5901552f7358SJed Brown Not collective 5902552f7358SJed Brown 5903552f7358SJed Brown Input Parameters: 5904552f7358SJed Brown + dm - The DM 59050298fd71SBarry Smith . section - The section describing the layout in v, or NULL to use the default section 5906552f7358SJed Brown . v - The local vector 5907eaf898f9SPatrick Sanan . point - The point in the DM 59080298fd71SBarry Smith . csize - The number of values in the closure, or NULL 5909552f7358SJed Brown - values - The array of values, which is a borrowed array and should not be freed 5910552f7358SJed Brown 591122c1ee49SMatthew G. Knepley Note that the array values are discarded and not copied back into v. In order to copy values back to v, use DMPlexVecSetClosure() 591222c1ee49SMatthew G. Knepley 59133813dfbdSMatthew G Knepley Fortran Notes: 59143813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 59153813dfbdSMatthew G Knepley include petsc.h90 in your code. 59163813dfbdSMatthew G Knepley 59173813dfbdSMatthew G Knepley The csize argument is not present in the Fortran 90 binding since it is internal to the array. 59183813dfbdSMatthew G Knepley 5919552f7358SJed Brown Level: intermediate 5920552f7358SJed Brown 5921db781477SPatrick Sanan .seealso `DMPlexVecGetClosure()`, `DMPlexVecSetClosure()`, `DMPlexMatSetClosure()` 5922552f7358SJed Brown @*/ 59237c1f9639SMatthew G Knepley PetscErrorCode DMPlexVecRestoreClosure(DM dm, PetscSection section, Vec v, PetscInt point, PetscInt *csize, PetscScalar *values[]) 5924a6dfd86eSKarl Rupp { 5925552f7358SJed Brown PetscInt size = 0; 5926552f7358SJed Brown 5927552f7358SJed Brown PetscFunctionBegin; 5928552f7358SJed Brown /* Should work without recalculating size */ 59299566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, size, MPIU_SCALAR, (void*) values)); 5930c9fdaa05SMatthew G. Knepley *values = NULL; 5931552f7358SJed Brown PetscFunctionReturn(0); 5932552f7358SJed Brown } 5933552f7358SJed Brown 59349fbee547SJacob Faibussowitsch static inline void add (PetscScalar *x, PetscScalar y) {*x += y;} 59359fbee547SJacob Faibussowitsch static inline void insert(PetscScalar *x, PetscScalar y) {*x = y;} 5936552f7358SJed Brown 59379fbee547SJacob Faibussowitsch static inline PetscErrorCode updatePoint_private(PetscSection section, PetscInt point, PetscInt dof, void (*fuse)(PetscScalar*, PetscScalar), PetscBool setBC, const PetscInt perm[], const PetscScalar flip[], const PetscInt clperm[], const PetscScalar values[], PetscInt offset, PetscScalar array[]) 5938552f7358SJed Brown { 5939552f7358SJed Brown PetscInt cdof; /* The number of constraints on this point */ 5940552f7358SJed Brown const PetscInt *cdofs; /* The indices of the constrained dofs on this point */ 5941552f7358SJed Brown PetscScalar *a; 5942552f7358SJed Brown PetscInt off, cind = 0, k; 5943552f7358SJed Brown 5944552f7358SJed Brown PetscFunctionBegin; 59459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, point, &cdof)); 59469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, point, &off)); 5947552f7358SJed Brown a = &array[off]; 5948552f7358SJed Brown if (!cdof || setBC) { 594997e99dd9SToby Isaac if (clperm) { 595097e99dd9SToby Isaac if (perm) {for (k = 0; k < dof; ++k) {fuse(&a[k], values[clperm[offset+perm[k]]] * (flip ? flip[perm[k]] : 1.));}} 595197e99dd9SToby Isaac else {for (k = 0; k < dof; ++k) {fuse(&a[k], values[clperm[offset+ k ]] * (flip ? flip[ k ] : 1.));}} 5952552f7358SJed Brown } else { 595397e99dd9SToby Isaac if (perm) {for (k = 0; k < dof; ++k) {fuse(&a[k], values[offset+perm[k]] * (flip ? flip[perm[k]] : 1.));}} 595497e99dd9SToby Isaac else {for (k = 0; k < dof; ++k) {fuse(&a[k], values[offset+ k ] * (flip ? flip[ k ] : 1.));}} 5955552f7358SJed Brown } 5956552f7358SJed Brown } else { 59579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, point, &cdofs)); 595897e99dd9SToby Isaac if (clperm) { 595997e99dd9SToby Isaac if (perm) {for (k = 0; k < dof; ++k) { 5960552f7358SJed Brown if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 596197e99dd9SToby Isaac fuse(&a[k], values[clperm[offset+perm[k]]] * (flip ? flip[perm[k]] : 1.)); 5962552f7358SJed Brown } 5963552f7358SJed Brown } else { 5964552f7358SJed Brown for (k = 0; k < dof; ++k) { 5965552f7358SJed Brown if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 596697e99dd9SToby Isaac fuse(&a[k], values[clperm[offset+ k ]] * (flip ? flip[ k ] : 1.)); 596797e99dd9SToby Isaac } 596897e99dd9SToby Isaac } 596997e99dd9SToby Isaac } else { 597097e99dd9SToby Isaac if (perm) { 597197e99dd9SToby Isaac for (k = 0; k < dof; ++k) { 597297e99dd9SToby Isaac if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 597397e99dd9SToby Isaac fuse(&a[k], values[offset+perm[k]] * (flip ? flip[perm[k]] : 1.)); 597497e99dd9SToby Isaac } 597597e99dd9SToby Isaac } else { 597697e99dd9SToby Isaac for (k = 0; k < dof; ++k) { 597797e99dd9SToby Isaac if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 597897e99dd9SToby Isaac fuse(&a[k], values[offset+ k ] * (flip ? flip[ k ] : 1.)); 597997e99dd9SToby Isaac } 5980552f7358SJed Brown } 5981552f7358SJed Brown } 5982552f7358SJed Brown } 5983552f7358SJed Brown PetscFunctionReturn(0); 5984552f7358SJed Brown } 5985552f7358SJed Brown 59869fbee547SJacob Faibussowitsch static inline PetscErrorCode updatePointBC_private(PetscSection section, PetscInt point, PetscInt dof, void (*fuse)(PetscScalar*, PetscScalar), const PetscInt perm[], const PetscScalar flip[], const PetscInt clperm[], const PetscScalar values[], PetscInt offset, PetscScalar array[]) 5987a5e93ea8SMatthew G. Knepley { 5988a5e93ea8SMatthew G. Knepley PetscInt cdof; /* The number of constraints on this point */ 5989a5e93ea8SMatthew G. Knepley const PetscInt *cdofs; /* The indices of the constrained dofs on this point */ 5990a5e93ea8SMatthew G. Knepley PetscScalar *a; 5991a5e93ea8SMatthew G. Knepley PetscInt off, cind = 0, k; 5992a5e93ea8SMatthew G. Knepley 5993a5e93ea8SMatthew G. Knepley PetscFunctionBegin; 59949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, point, &cdof)); 59959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, point, &off)); 5996a5e93ea8SMatthew G. Knepley a = &array[off]; 5997a5e93ea8SMatthew G. Knepley if (cdof) { 59989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, point, &cdofs)); 599997e99dd9SToby Isaac if (clperm) { 600097e99dd9SToby Isaac if (perm) { 6001a5e93ea8SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6002a5e93ea8SMatthew G. Knepley if ((cind < cdof) && (k == cdofs[cind])) { 600397e99dd9SToby Isaac fuse(&a[k], values[clperm[offset+perm[k]]] * (flip ? flip[perm[k]] : 1.)); 600497e99dd9SToby Isaac cind++; 6005a5e93ea8SMatthew G. Knepley } 6006a5e93ea8SMatthew G. Knepley } 6007a5e93ea8SMatthew G. Knepley } else { 6008a5e93ea8SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6009a5e93ea8SMatthew G. Knepley if ((cind < cdof) && (k == cdofs[cind])) { 601097e99dd9SToby Isaac fuse(&a[k], values[clperm[offset+ k ]] * (flip ? flip[ k ] : 1.)); 601197e99dd9SToby Isaac cind++; 601297e99dd9SToby Isaac } 601397e99dd9SToby Isaac } 601497e99dd9SToby Isaac } 601597e99dd9SToby Isaac } else { 601697e99dd9SToby Isaac if (perm) { 601797e99dd9SToby Isaac for (k = 0; k < dof; ++k) { 601897e99dd9SToby Isaac if ((cind < cdof) && (k == cdofs[cind])) { 601997e99dd9SToby Isaac fuse(&a[k], values[offset+perm[k]] * (flip ? flip[perm[k]] : 1.)); 602097e99dd9SToby Isaac cind++; 602197e99dd9SToby Isaac } 602297e99dd9SToby Isaac } 602397e99dd9SToby Isaac } else { 602497e99dd9SToby Isaac for (k = 0; k < dof; ++k) { 602597e99dd9SToby Isaac if ((cind < cdof) && (k == cdofs[cind])) { 602697e99dd9SToby Isaac fuse(&a[k], values[offset+ k ] * (flip ? flip[ k ] : 1.)); 602797e99dd9SToby Isaac cind++; 602897e99dd9SToby Isaac } 6029a5e93ea8SMatthew G. Knepley } 6030a5e93ea8SMatthew G. Knepley } 6031a5e93ea8SMatthew G. Knepley } 6032a5e93ea8SMatthew G. Knepley } 6033a5e93ea8SMatthew G. Knepley PetscFunctionReturn(0); 6034a5e93ea8SMatthew G. Knepley } 6035a5e93ea8SMatthew G. Knepley 60369fbee547SJacob Faibussowitsch static inline PetscErrorCode updatePointFields_private(PetscSection section, PetscInt point, const PetscInt *perm, const PetscScalar *flip, PetscInt f, void (*fuse)(PetscScalar*, PetscScalar), PetscBool setBC, const PetscInt clperm[], const PetscScalar values[], PetscInt *offset, PetscScalar array[]) 6037a6dfd86eSKarl Rupp { 6038552f7358SJed Brown PetscScalar *a; 60391a271a75SMatthew G. Knepley PetscInt fdof, foff, fcdof, foffset = *offset; 60401a271a75SMatthew G. Knepley const PetscInt *fcdofs; /* The indices of the constrained dofs for field f on this point */ 604197e99dd9SToby Isaac PetscInt cind = 0, b; 6042552f7358SJed Brown 6043552f7358SJed Brown PetscFunctionBegin; 60449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 60459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, point, f, &fcdof)); 60469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(section, point, f, &foff)); 60471a271a75SMatthew G. Knepley a = &array[foff]; 6048552f7358SJed Brown if (!fcdof || setBC) { 604997e99dd9SToby Isaac if (clperm) { 605097e99dd9SToby Isaac if (perm) {for (b = 0; b < fdof; b++) {fuse(&a[b], values[clperm[foffset+perm[b]]] * (flip ? flip[perm[b]] : 1.));}} 605197e99dd9SToby Isaac else {for (b = 0; b < fdof; b++) {fuse(&a[b], values[clperm[foffset+ b ]] * (flip ? flip[ b ] : 1.));}} 6052552f7358SJed Brown } else { 605397e99dd9SToby Isaac if (perm) {for (b = 0; b < fdof; b++) {fuse(&a[b], values[foffset+perm[b]] * (flip ? flip[perm[b]] : 1.));}} 605497e99dd9SToby Isaac else {for (b = 0; b < fdof; b++) {fuse(&a[b], values[foffset+ b ] * (flip ? flip[ b ] : 1.));}} 6055552f7358SJed Brown } 6056552f7358SJed Brown } else { 60579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(section, point, f, &fcdofs)); 605897e99dd9SToby Isaac if (clperm) { 605997e99dd9SToby Isaac if (perm) { 606097e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 606197e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; continue;} 606297e99dd9SToby Isaac fuse(&a[b], values[clperm[foffset+perm[b]]] * (flip ? flip[perm[b]] : 1.)); 6063552f7358SJed Brown } 6064552f7358SJed Brown } else { 606597e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 606697e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; continue;} 606797e99dd9SToby Isaac fuse(&a[b], values[clperm[foffset+ b ]] * (flip ? flip[ b ] : 1.)); 606897e99dd9SToby Isaac } 606997e99dd9SToby Isaac } 607097e99dd9SToby Isaac } else { 607197e99dd9SToby Isaac if (perm) { 607297e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 607397e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; continue;} 607497e99dd9SToby Isaac fuse(&a[b], values[foffset+perm[b]] * (flip ? flip[perm[b]] : 1.)); 607597e99dd9SToby Isaac } 607697e99dd9SToby Isaac } else { 607797e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 607897e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; continue;} 607997e99dd9SToby Isaac fuse(&a[b], values[foffset+ b ] * (flip ? flip[ b ] : 1.)); 6080552f7358SJed Brown } 6081552f7358SJed Brown } 6082552f7358SJed Brown } 6083552f7358SJed Brown } 60841a271a75SMatthew G. Knepley *offset += fdof; 6085552f7358SJed Brown PetscFunctionReturn(0); 6086552f7358SJed Brown } 6087552f7358SJed Brown 60889fbee547SJacob Faibussowitsch static inline PetscErrorCode updatePointFieldsBC_private(PetscSection section, PetscInt point, const PetscInt perm[], const PetscScalar flip[], PetscInt f, PetscInt Ncc, const PetscInt comps[], void (*fuse)(PetscScalar*, PetscScalar), const PetscInt clperm[], const PetscScalar values[], PetscInt *offset, PetscScalar array[]) 6089a5e93ea8SMatthew G. Knepley { 6090a5e93ea8SMatthew G. Knepley PetscScalar *a; 60911a271a75SMatthew G. Knepley PetscInt fdof, foff, fcdof, foffset = *offset; 60921a271a75SMatthew G. Knepley const PetscInt *fcdofs; /* The indices of the constrained dofs for field f on this point */ 60935da9d227SMatthew G. Knepley PetscInt Nc, cind = 0, ncind = 0, b; 6094ba322698SMatthew G. Knepley PetscBool ncSet, fcSet; 6095a5e93ea8SMatthew G. Knepley 6096a5e93ea8SMatthew G. Knepley PetscFunctionBegin; 60979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &Nc)); 60989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 60999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, point, f, &fcdof)); 61009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(section, point, f, &foff)); 61011a271a75SMatthew G. Knepley a = &array[foff]; 6102a5e93ea8SMatthew G. Knepley if (fcdof) { 6103ba322698SMatthew G. Knepley /* We just override fcdof and fcdofs with Ncc and comps */ 61049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(section, point, f, &fcdofs)); 610597e99dd9SToby Isaac if (clperm) { 610697e99dd9SToby Isaac if (perm) { 6107ba322698SMatthew G. Knepley if (comps) { 6108ba322698SMatthew G. Knepley for (b = 0; b < fdof; b++) { 6109ba322698SMatthew G. Knepley ncSet = fcSet = PETSC_FALSE; 61105da9d227SMatthew G. Knepley if (b%Nc == comps[ncind]) {ncind = (ncind+1)%Ncc; ncSet = PETSC_TRUE;} 6111ba322698SMatthew G. Knepley if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; fcSet = PETSC_TRUE;} 6112ba322698SMatthew G. Knepley if (ncSet && fcSet) {fuse(&a[b], values[clperm[foffset+perm[b]]] * (flip ? flip[perm[b]] : 1.));} 6113ba322698SMatthew G. Knepley } 6114ba322698SMatthew G. Knepley } else { 611597e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 611697e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) { 611797e99dd9SToby Isaac fuse(&a[b], values[clperm[foffset+perm[b]]] * (flip ? flip[perm[b]] : 1.)); 6118a5e93ea8SMatthew G. Knepley ++cind; 6119a5e93ea8SMatthew G. Knepley } 6120a5e93ea8SMatthew G. Knepley } 6121ba322698SMatthew G. Knepley } 6122ba322698SMatthew G. Knepley } else { 6123ba322698SMatthew G. Knepley if (comps) { 6124ba322698SMatthew G. Knepley for (b = 0; b < fdof; b++) { 6125ba322698SMatthew G. Knepley ncSet = fcSet = PETSC_FALSE; 61265da9d227SMatthew G. Knepley if (b%Nc == comps[ncind]) {ncind = (ncind+1)%Ncc; ncSet = PETSC_TRUE;} 6127ba322698SMatthew G. Knepley if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; fcSet = PETSC_TRUE;} 6128ba322698SMatthew G. Knepley if (ncSet && fcSet) {fuse(&a[b], values[clperm[foffset+ b ]] * (flip ? flip[ b ] : 1.));} 6129ba322698SMatthew G. Knepley } 6130a5e93ea8SMatthew G. Knepley } else { 613197e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 613297e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) { 613397e99dd9SToby Isaac fuse(&a[b], values[clperm[foffset+ b ]] * (flip ? flip[ b ] : 1.)); 613497e99dd9SToby Isaac ++cind; 613597e99dd9SToby Isaac } 613697e99dd9SToby Isaac } 613797e99dd9SToby Isaac } 6138ba322698SMatthew G. Knepley } 613997e99dd9SToby Isaac } else { 614097e99dd9SToby Isaac if (perm) { 6141ba322698SMatthew G. Knepley if (comps) { 6142ba322698SMatthew G. Knepley for (b = 0; b < fdof; b++) { 6143ba322698SMatthew G. Knepley ncSet = fcSet = PETSC_FALSE; 61445da9d227SMatthew G. Knepley if (b%Nc == comps[ncind]) {ncind = (ncind+1)%Ncc; ncSet = PETSC_TRUE;} 6145ba322698SMatthew G. Knepley if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; fcSet = PETSC_TRUE;} 6146ba322698SMatthew G. Knepley if (ncSet && fcSet) {fuse(&a[b], values[foffset+perm[b]] * (flip ? flip[perm[b]] : 1.));} 6147ba322698SMatthew G. Knepley } 6148ba322698SMatthew G. Knepley } else { 614997e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 615097e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) { 615197e99dd9SToby Isaac fuse(&a[b], values[foffset+perm[b]] * (flip ? flip[perm[b]] : 1.)); 615297e99dd9SToby Isaac ++cind; 615397e99dd9SToby Isaac } 615497e99dd9SToby Isaac } 6155ba322698SMatthew G. Knepley } 6156ba322698SMatthew G. Knepley } else { 6157ba322698SMatthew G. Knepley if (comps) { 6158ba322698SMatthew G. Knepley for (b = 0; b < fdof; b++) { 6159ba322698SMatthew G. Knepley ncSet = fcSet = PETSC_FALSE; 61605da9d227SMatthew G. Knepley if (b%Nc == comps[ncind]) {ncind = (ncind+1)%Ncc; ncSet = PETSC_TRUE;} 6161ba322698SMatthew G. Knepley if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; fcSet = PETSC_TRUE;} 6162ba322698SMatthew G. Knepley if (ncSet && fcSet) {fuse(&a[b], values[foffset+ b ] * (flip ? flip[ b ] : 1.));} 6163ba322698SMatthew G. Knepley } 616497e99dd9SToby Isaac } else { 616597e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 616697e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) { 616797e99dd9SToby Isaac fuse(&a[b], values[foffset+ b ] * (flip ? flip[ b ] : 1.)); 6168a5e93ea8SMatthew G. Knepley ++cind; 6169a5e93ea8SMatthew G. Knepley } 6170a5e93ea8SMatthew G. Knepley } 6171a5e93ea8SMatthew G. Knepley } 6172a5e93ea8SMatthew G. Knepley } 6173a5e93ea8SMatthew G. Knepley } 6174ba322698SMatthew G. Knepley } 61751a271a75SMatthew G. Knepley *offset += fdof; 6176a5e93ea8SMatthew G. Knepley PetscFunctionReturn(0); 6177a5e93ea8SMatthew G. Knepley } 6178a5e93ea8SMatthew G. Knepley 61799fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexVecSetClosure_Depth1_Static(DM dm, PetscSection section, Vec v, PetscInt point, const PetscScalar values[], InsertMode mode) 6180a6dfd86eSKarl Rupp { 6181552f7358SJed Brown PetscScalar *array; 61821b406b76SMatthew G. Knepley const PetscInt *cone, *coneO; 61831b406b76SMatthew G. Knepley PetscInt pStart, pEnd, p, numPoints, off, dof; 6184552f7358SJed Brown 61851b406b76SMatthew G. Knepley PetscFunctionBeginHot; 61869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 61879566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &numPoints)); 61889566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 61899566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &coneO)); 61909566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &array)); 6191b6ebb6e6SMatthew G. Knepley for (p = 0, off = 0; p <= numPoints; ++p, off += dof) { 6192b6ebb6e6SMatthew G. Knepley const PetscInt cp = !p ? point : cone[p-1]; 6193b6ebb6e6SMatthew G. Knepley const PetscInt o = !p ? 0 : coneO[p-1]; 6194b6ebb6e6SMatthew G. Knepley 6195b6ebb6e6SMatthew G. Knepley if ((cp < pStart) || (cp >= pEnd)) {dof = 0; continue;} 61969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, cp, &dof)); 6197b6ebb6e6SMatthew G. Knepley /* ADD_VALUES */ 6198b6ebb6e6SMatthew G. Knepley { 6199b6ebb6e6SMatthew G. Knepley const PetscInt *cdofs; /* The indices of the constrained dofs on this point */ 6200b6ebb6e6SMatthew G. Knepley PetscScalar *a; 6201b6ebb6e6SMatthew G. Knepley PetscInt cdof, coff, cind = 0, k; 6202b6ebb6e6SMatthew G. Knepley 62039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, cp, &cdof)); 62049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, cp, &coff)); 6205b6ebb6e6SMatthew G. Knepley a = &array[coff]; 6206b6ebb6e6SMatthew G. Knepley if (!cdof) { 6207b6ebb6e6SMatthew G. Knepley if (o >= 0) { 6208b6ebb6e6SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6209b6ebb6e6SMatthew G. Knepley a[k] += values[off+k]; 6210b6ebb6e6SMatthew G. Knepley } 6211b6ebb6e6SMatthew G. Knepley } else { 6212b6ebb6e6SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6213b6ebb6e6SMatthew G. Knepley a[k] += values[off+dof-k-1]; 6214b6ebb6e6SMatthew G. Knepley } 6215b6ebb6e6SMatthew G. Knepley } 6216b6ebb6e6SMatthew G. Knepley } else { 62179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, cp, &cdofs)); 6218b6ebb6e6SMatthew G. Knepley if (o >= 0) { 6219b6ebb6e6SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6220b6ebb6e6SMatthew G. Knepley if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 6221b6ebb6e6SMatthew G. Knepley a[k] += values[off+k]; 6222b6ebb6e6SMatthew G. Knepley } 6223b6ebb6e6SMatthew G. Knepley } else { 6224b6ebb6e6SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6225b6ebb6e6SMatthew G. Knepley if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 6226b6ebb6e6SMatthew G. Knepley a[k] += values[off+dof-k-1]; 6227b6ebb6e6SMatthew G. Knepley } 6228b6ebb6e6SMatthew G. Knepley } 6229b6ebb6e6SMatthew G. Knepley } 6230b6ebb6e6SMatthew G. Knepley } 6231b6ebb6e6SMatthew G. Knepley } 62329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &array)); 6233b6ebb6e6SMatthew G. Knepley PetscFunctionReturn(0); 6234b6ebb6e6SMatthew G. Knepley } 62351b406b76SMatthew G. Knepley 62361b406b76SMatthew G. Knepley /*@C 62371b406b76SMatthew G. Knepley DMPlexVecSetClosure - Set an array of the values on the closure of 'point' 62381b406b76SMatthew G. Knepley 62391b406b76SMatthew G. Knepley Not collective 62401b406b76SMatthew G. Knepley 62411b406b76SMatthew G. Knepley Input Parameters: 62421b406b76SMatthew G. Knepley + dm - The DM 62431b406b76SMatthew G. Knepley . section - The section describing the layout in v, or NULL to use the default section 62441b406b76SMatthew G. Knepley . v - The local vector 6245eaf898f9SPatrick Sanan . point - The point in the DM 62461b406b76SMatthew G. Knepley . values - The array of values 624722c1ee49SMatthew G. Knepley - mode - The insert mode. One of INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_VALUES, ADD_VALUES, INSERT_BC_VALUES, and ADD_BC_VALUES, 624822c1ee49SMatthew G. Knepley where INSERT_ALL_VALUES and ADD_ALL_VALUES also overwrite boundary conditions. 62491b406b76SMatthew G. Knepley 62501b406b76SMatthew G. Knepley Fortran Notes: 62511b406b76SMatthew G. Knepley This routine is only available in Fortran 90, and you must include petsc.h90 in your code. 62521b406b76SMatthew G. Knepley 62531b406b76SMatthew G. Knepley Level: intermediate 62541b406b76SMatthew G. Knepley 6255db781477SPatrick Sanan .seealso `DMPlexVecGetClosure()`, `DMPlexMatSetClosure()` 62561b406b76SMatthew G. Knepley @*/ 62571b406b76SMatthew G. Knepley PetscErrorCode DMPlexVecSetClosure(DM dm, PetscSection section, Vec v, PetscInt point, const PetscScalar values[], InsertMode mode) 62581b406b76SMatthew G. Knepley { 62591b406b76SMatthew G. Knepley PetscSection clSection; 62601b406b76SMatthew G. Knepley IS clPoints; 62611b406b76SMatthew G. Knepley PetscScalar *array; 62621b406b76SMatthew G. Knepley PetscInt *points = NULL; 626327f02ce8SMatthew G. Knepley const PetscInt *clp, *clperm = NULL; 6264c459fbc1SJed Brown PetscInt depth, numFields, numPoints, p, clsize; 62651b406b76SMatthew G. Knepley 62661a271a75SMatthew G. Knepley PetscFunctionBeginHot; 62671b406b76SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62689566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 62691a271a75SMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 62701a271a75SMatthew G. Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 3); 62719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 62729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 62731b406b76SMatthew G. Knepley if (depth == 1 && numFields < 2 && mode == ADD_VALUES) { 62749566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure_Depth1_Static(dm, section, v, point, values, mode)); 62751b406b76SMatthew G. Knepley PetscFunctionReturn(0); 62761b406b76SMatthew G. Knepley } 62771a271a75SMatthew G. Knepley /* Get points */ 62789566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 6279c459fbc1SJed Brown for (clsize=0,p=0; p<numPoints; p++) { 6280c459fbc1SJed Brown PetscInt dof; 62819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[2*p], &dof)); 6282c459fbc1SJed Brown clsize += dof; 6283c459fbc1SJed Brown } 62849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, (PetscObject) dm, depth, clsize, &clperm)); 62851a271a75SMatthew G. Knepley /* Get array */ 62869566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &array)); 62871a271a75SMatthew G. Knepley /* Get values */ 6288ef90cfe2SMatthew G. Knepley if (numFields > 0) { 628997e99dd9SToby Isaac PetscInt offset = 0, f; 6290552f7358SJed Brown for (f = 0; f < numFields; ++f) { 629197e99dd9SToby Isaac const PetscInt **perms = NULL; 629297e99dd9SToby Isaac const PetscScalar **flips = NULL; 629397e99dd9SToby Isaac 62949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 6295552f7358SJed Brown switch (mode) { 6296552f7358SJed Brown case INSERT_VALUES: 629797e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 629897e99dd9SToby Isaac const PetscInt point = points[2*p]; 629997e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 630097e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 630197e99dd9SToby Isaac updatePointFields_private(section, point, perm, flip, f, insert, PETSC_FALSE, clperm, values, &offset, array); 6302552f7358SJed Brown } break; 6303552f7358SJed Brown case INSERT_ALL_VALUES: 630497e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 630597e99dd9SToby Isaac const PetscInt point = points[2*p]; 630697e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 630797e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 630897e99dd9SToby Isaac updatePointFields_private(section, point, perm, flip, f, insert, PETSC_TRUE, clperm, values, &offset, array); 6309552f7358SJed Brown } break; 6310a5e93ea8SMatthew G. Knepley case INSERT_BC_VALUES: 631197e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 631297e99dd9SToby Isaac const PetscInt point = points[2*p]; 631397e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 631497e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 6315ba322698SMatthew G. Knepley updatePointFieldsBC_private(section, point, perm, flip, f, -1, NULL, insert, clperm, values, &offset, array); 6316a5e93ea8SMatthew G. Knepley } break; 6317552f7358SJed Brown case ADD_VALUES: 631897e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 631997e99dd9SToby Isaac const PetscInt point = points[2*p]; 632097e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 632197e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 632297e99dd9SToby Isaac updatePointFields_private(section, point, perm, flip, f, add, PETSC_FALSE, clperm, values, &offset, array); 6323552f7358SJed Brown } break; 6324552f7358SJed Brown case ADD_ALL_VALUES: 632597e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 632697e99dd9SToby Isaac const PetscInt point = points[2*p]; 632797e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 632897e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 632997e99dd9SToby Isaac updatePointFields_private(section, point, perm, flip, f, add, PETSC_TRUE, clperm, values, &offset, array); 6330552f7358SJed Brown } break; 6331304ab55fSMatthew G. Knepley case ADD_BC_VALUES: 633297e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 633397e99dd9SToby Isaac const PetscInt point = points[2*p]; 633497e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 633597e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 6336ba322698SMatthew G. Knepley updatePointFieldsBC_private(section, point, perm, flip, f, -1, NULL, add, clperm, values, &offset, array); 6337304ab55fSMatthew G. Knepley } break; 6338552f7358SJed Brown default: 633998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insert mode %d", mode); 6340552f7358SJed Brown } 63419566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 63421a271a75SMatthew G. Knepley } 6343552f7358SJed Brown } else { 63441a271a75SMatthew G. Knepley PetscInt dof, off; 634597e99dd9SToby Isaac const PetscInt **perms = NULL; 634697e99dd9SToby Isaac const PetscScalar **flips = NULL; 63471a271a75SMatthew G. Knepley 63489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(section,numPoints,points,&perms,&flips)); 6349552f7358SJed Brown switch (mode) { 6350552f7358SJed Brown case INSERT_VALUES: 635197e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 635297e99dd9SToby Isaac const PetscInt point = points[2*p]; 635397e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 635497e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 635697e99dd9SToby Isaac updatePoint_private(section, point, dof, insert, PETSC_FALSE, perm, flip, clperm, values, off, array); 6357552f7358SJed Brown } break; 6358552f7358SJed Brown case INSERT_ALL_VALUES: 635997e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 636097e99dd9SToby Isaac const PetscInt point = points[2*p]; 636197e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 636297e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 636497e99dd9SToby Isaac updatePoint_private(section, point, dof, insert, PETSC_TRUE, perm, flip, clperm, values, off, array); 6365552f7358SJed Brown } break; 6366a5e93ea8SMatthew G. Knepley case INSERT_BC_VALUES: 636797e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 636897e99dd9SToby Isaac const PetscInt point = points[2*p]; 636997e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 637097e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 637297e99dd9SToby Isaac updatePointBC_private(section, point, dof, insert, perm, flip, clperm, values, off, array); 6373a5e93ea8SMatthew G. Knepley } break; 6374552f7358SJed Brown case ADD_VALUES: 637597e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 637697e99dd9SToby Isaac const PetscInt point = points[2*p]; 637797e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 637897e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 638097e99dd9SToby Isaac updatePoint_private(section, point, dof, add, PETSC_FALSE, perm, flip, clperm, values, off, array); 6381552f7358SJed Brown } break; 6382552f7358SJed Brown case ADD_ALL_VALUES: 638397e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 638497e99dd9SToby Isaac const PetscInt point = points[2*p]; 638597e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 638697e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 638897e99dd9SToby Isaac updatePoint_private(section, point, dof, add, PETSC_TRUE, perm, flip, clperm, values, off, array); 6389552f7358SJed Brown } break; 6390304ab55fSMatthew G. Knepley case ADD_BC_VALUES: 639197e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 639297e99dd9SToby Isaac const PetscInt point = points[2*p]; 639397e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 639497e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 639697e99dd9SToby Isaac updatePointBC_private(section, point, dof, add, perm, flip, clperm, values, off, array); 6397304ab55fSMatthew G. Knepley } break; 6398552f7358SJed Brown default: 639998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insert mode %d", mode); 6400552f7358SJed Brown } 64019566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(section,numPoints,points,&perms,&flips)); 6402552f7358SJed Brown } 64031a271a75SMatthew G. Knepley /* Cleanup points */ 64049566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 64051a271a75SMatthew G. Knepley /* Cleanup array */ 64069566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &array)); 6407552f7358SJed Brown PetscFunctionReturn(0); 6408552f7358SJed Brown } 6409552f7358SJed Brown 64105f790a90SMatthew G. Knepley /* Check whether the given point is in the label. If not, update the offset to skip this point */ 64119fbee547SJacob Faibussowitsch static inline PetscErrorCode CheckPoint_Private(DMLabel label, PetscInt labelId, PetscSection section, PetscInt point, PetscInt f, PetscInt *offset) 64125f790a90SMatthew G. Knepley { 64135f790a90SMatthew G. Knepley PetscFunctionBegin; 64145f790a90SMatthew G. Knepley if (label) { 64155f790a90SMatthew G. Knepley PetscInt val, fdof; 64165f790a90SMatthew G. Knepley 64175f790a90SMatthew G. Knepley /* There is a problem with this: 64185f790a90SMatthew G. Knepley Suppose we have two label values, defining surfaces, interecting along a line in 3D. When we add cells to the label, the cells that 64195f790a90SMatthew G. Knepley touch both surfaces must pick a label value. Thus we miss setting values for the surface with that other value intersecting that cell. 64205f790a90SMatthew G. Knepley Thus I am only going to check val != -1, not val != labelId 64215f790a90SMatthew G. Knepley */ 64229566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 64235f790a90SMatthew G. Knepley if (val < 0) { 64249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 64255f790a90SMatthew G. Knepley *offset += fdof; 64265f790a90SMatthew G. Knepley PetscFunctionReturn(1); 64275f790a90SMatthew G. Knepley } 64285f790a90SMatthew G. Knepley } 64295f790a90SMatthew G. Knepley PetscFunctionReturn(0); 64305f790a90SMatthew G. Knepley } 64315f790a90SMatthew G. Knepley 643297529cf3SJed Brown /* Unlike DMPlexVecSetClosure(), this uses plex-native closure permutation, not a user-specified permutation such as DMPlexSetClosurePermutationTensor(). */ 64335f790a90SMatthew G. Knepley PetscErrorCode DMPlexVecSetFieldClosure_Internal(DM dm, PetscSection section, Vec v, PetscBool fieldActive[], PetscInt point, PetscInt Ncc, const PetscInt comps[], DMLabel label, PetscInt labelId, const PetscScalar values[], InsertMode mode) 6434e07394fbSMatthew G. Knepley { 6435e07394fbSMatthew G. Knepley PetscSection clSection; 6436e07394fbSMatthew G. Knepley IS clPoints; 6437e07394fbSMatthew G. Knepley PetscScalar *array; 6438e07394fbSMatthew G. Knepley PetscInt *points = NULL; 643997529cf3SJed Brown const PetscInt *clp; 6440e07394fbSMatthew G. Knepley PetscInt numFields, numPoints, p; 644197e99dd9SToby Isaac PetscInt offset = 0, f; 6442e07394fbSMatthew G. Knepley 6443e07394fbSMatthew G. Knepley PetscFunctionBeginHot; 6444e07394fbSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64459566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 6446e07394fbSMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 6447e07394fbSMatthew G. Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 3); 64489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 6449e07394fbSMatthew G. Knepley /* Get points */ 64509566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 6451e07394fbSMatthew G. Knepley /* Get array */ 64529566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &array)); 6453e07394fbSMatthew G. Knepley /* Get values */ 6454e07394fbSMatthew G. Knepley for (f = 0; f < numFields; ++f) { 645597e99dd9SToby Isaac const PetscInt **perms = NULL; 645697e99dd9SToby Isaac const PetscScalar **flips = NULL; 645797e99dd9SToby Isaac 6458e07394fbSMatthew G. Knepley if (!fieldActive[f]) { 6459e07394fbSMatthew G. Knepley for (p = 0; p < numPoints*2; p += 2) { 6460e07394fbSMatthew G. Knepley PetscInt fdof; 64619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, points[p], f, &fdof)); 6462e07394fbSMatthew G. Knepley offset += fdof; 6463e07394fbSMatthew G. Knepley } 6464e07394fbSMatthew G. Knepley continue; 6465e07394fbSMatthew G. Knepley } 64669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 6467e07394fbSMatthew G. Knepley switch (mode) { 6468e07394fbSMatthew G. Knepley case INSERT_VALUES: 646997e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 647097e99dd9SToby Isaac const PetscInt point = points[2*p]; 647197e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 647297e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 64735f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 64749566063dSJacob Faibussowitsch PetscCall(updatePointFields_private(section, point, perm, flip, f, insert, PETSC_FALSE, NULL, values, &offset, array)); 6475e07394fbSMatthew G. Knepley } break; 6476e07394fbSMatthew G. Knepley case INSERT_ALL_VALUES: 647797e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 647897e99dd9SToby Isaac const PetscInt point = points[2*p]; 647997e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 648097e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 64815f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 64829566063dSJacob Faibussowitsch PetscCall(updatePointFields_private(section, point, perm, flip, f, insert, PETSC_TRUE, NULL, values, &offset, array)); 6483e07394fbSMatthew G. Knepley } break; 6484e07394fbSMatthew G. Knepley case INSERT_BC_VALUES: 648597e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 648697e99dd9SToby Isaac const PetscInt point = points[2*p]; 648797e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 648897e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 64895f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 64909566063dSJacob Faibussowitsch PetscCall(updatePointFieldsBC_private(section, point, perm, flip, f, Ncc, comps, insert, NULL, values, &offset, array)); 6491e07394fbSMatthew G. Knepley } break; 6492e07394fbSMatthew G. Knepley case ADD_VALUES: 649397e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 649497e99dd9SToby Isaac const PetscInt point = points[2*p]; 649597e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 649697e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 64975f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 64989566063dSJacob Faibussowitsch PetscCall(updatePointFields_private(section, point, perm, flip, f, add, PETSC_FALSE, NULL, values, &offset, array)); 6499e07394fbSMatthew G. Knepley } break; 6500e07394fbSMatthew G. Knepley case ADD_ALL_VALUES: 650197e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 650297e99dd9SToby Isaac const PetscInt point = points[2*p]; 650397e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 650497e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 65055f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 65069566063dSJacob Faibussowitsch PetscCall(updatePointFields_private(section, point, perm, flip, f, add, PETSC_TRUE, NULL, values, &offset, array)); 6507e07394fbSMatthew G. Knepley } break; 6508e07394fbSMatthew G. Knepley default: 650998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insert mode %d", mode); 6510e07394fbSMatthew G. Knepley } 65119566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 6512e07394fbSMatthew G. Knepley } 6513e07394fbSMatthew G. Knepley /* Cleanup points */ 65149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 6515e07394fbSMatthew G. Knepley /* Cleanup array */ 65169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &array)); 6517e07394fbSMatthew G. Knepley PetscFunctionReturn(0); 6518e07394fbSMatthew G. Knepley } 6519e07394fbSMatthew G. Knepley 65207cd05799SMatthew G. Knepley static PetscErrorCode DMPlexPrintMatSetValues(PetscViewer viewer, Mat A, PetscInt point, PetscInt numRIndices, const PetscInt rindices[], PetscInt numCIndices, const PetscInt cindices[], const PetscScalar values[]) 6521552f7358SJed Brown { 6522552f7358SJed Brown PetscMPIInt rank; 6523552f7358SJed Brown PetscInt i, j; 6524552f7358SJed Brown 6525552f7358SJed Brown PetscFunctionBegin; 65269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 652763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "[%d]mat for point %" PetscInt_FMT "\n", rank, point)); 652863a3b9bcSJacob Faibussowitsch for (i = 0; i < numRIndices; i++) PetscCall(PetscViewerASCIIPrintf(viewer, "[%d]mat row indices[%" PetscInt_FMT "] = %" PetscInt_FMT "\n", rank, i, rindices[i])); 652963a3b9bcSJacob Faibussowitsch for (i = 0; i < numCIndices; i++) PetscCall(PetscViewerASCIIPrintf(viewer, "[%d]mat col indices[%" PetscInt_FMT "] = %" PetscInt_FMT "\n", rank, i, cindices[i])); 6530b0ecff45SMatthew G. Knepley numCIndices = numCIndices ? numCIndices : numRIndices; 6531557cf195SMatthew G. Knepley if (!values) PetscFunctionReturn(0); 6532b0ecff45SMatthew G. Knepley for (i = 0; i < numRIndices; i++) { 65339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "[%d]", rank)); 6534b0ecff45SMatthew G. Knepley for (j = 0; j < numCIndices; j++) { 6535519f805aSKarl Rupp #if defined(PETSC_USE_COMPLEX) 65369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%g,%g)", (double)PetscRealPart(values[i*numCIndices+j]), (double)PetscImaginaryPart(values[i*numCIndices+j]))); 6537552f7358SJed Brown #else 65389566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %g", (double)values[i*numCIndices+j])); 6539552f7358SJed Brown #endif 6540552f7358SJed Brown } 65419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 6542552f7358SJed Brown } 6543552f7358SJed Brown PetscFunctionReturn(0); 6544552f7358SJed Brown } 6545552f7358SJed Brown 654605586334SMatthew G. Knepley /* 654705586334SMatthew G. Knepley DMPlexGetIndicesPoint_Internal - Add the indices for dofs on a point to an index array 654805586334SMatthew G. Knepley 654905586334SMatthew G. Knepley Input Parameters: 655005586334SMatthew G. Knepley + section - The section for this data layout 655136fa2b79SJed Brown . islocal - Is the section (and thus indices being requested) local or global? 655205586334SMatthew G. Knepley . point - The point contributing dofs with these indices 655305586334SMatthew G. Knepley . off - The global offset of this point 655405586334SMatthew G. Knepley . loff - The local offset of each field 6555a5b23f4aSJose E. Roman . setBC - The flag determining whether to include indices of boundary values 655605586334SMatthew G. Knepley . perm - A permutation of the dofs on this point, or NULL 655705586334SMatthew G. Knepley - indperm - A permutation of the entire indices array, or NULL 655805586334SMatthew G. Knepley 655905586334SMatthew G. Knepley Output Parameter: 656005586334SMatthew G. Knepley . indices - Indices for dofs on this point 656105586334SMatthew G. Knepley 656205586334SMatthew G. Knepley Level: developer 656305586334SMatthew G. Knepley 656405586334SMatthew G. Knepley Note: The indices could be local or global, depending on the value of 'off'. 656505586334SMatthew G. Knepley */ 656636fa2b79SJed Brown PetscErrorCode DMPlexGetIndicesPoint_Internal(PetscSection section, PetscBool islocal,PetscInt point, PetscInt off, PetscInt *loff, PetscBool setBC, const PetscInt perm[], const PetscInt indperm[], PetscInt indices[]) 6567a6dfd86eSKarl Rupp { 6568e6ccafaeSMatthew G Knepley PetscInt dof; /* The number of unknowns on this point */ 6569552f7358SJed Brown PetscInt cdof; /* The number of constraints on this point */ 6570552f7358SJed Brown const PetscInt *cdofs; /* The indices of the constrained dofs on this point */ 6571552f7358SJed Brown PetscInt cind = 0, k; 6572552f7358SJed Brown 6573552f7358SJed Brown PetscFunctionBegin; 657408401ef6SPierre Jolivet PetscCheck(islocal || !setBC,PetscObjectComm((PetscObject)section),PETSC_ERR_ARG_INCOMP,"setBC incompatible with global indices; use a local section or disable setBC"); 65759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 65769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, point, &cdof)); 6577552f7358SJed Brown if (!cdof || setBC) { 657805586334SMatthew G. Knepley for (k = 0; k < dof; ++k) { 657905586334SMatthew G. Knepley const PetscInt preind = perm ? *loff+perm[k] : *loff+k; 658005586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 658105586334SMatthew G. Knepley 658205586334SMatthew G. Knepley indices[ind] = off + k; 6583552f7358SJed Brown } 6584552f7358SJed Brown } else { 65859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, point, &cdofs)); 65864acb8e1eSToby Isaac for (k = 0; k < dof; ++k) { 658705586334SMatthew G. Knepley const PetscInt preind = perm ? *loff+perm[k] : *loff+k; 658805586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 658905586334SMatthew G. Knepley 65904acb8e1eSToby Isaac if ((cind < cdof) && (k == cdofs[cind])) { 65914acb8e1eSToby Isaac /* Insert check for returning constrained indices */ 659205586334SMatthew G. Knepley indices[ind] = -(off+k+1); 65934acb8e1eSToby Isaac ++cind; 65944acb8e1eSToby Isaac } else { 659536fa2b79SJed Brown indices[ind] = off + k - (islocal ? 0 : cind); 6596552f7358SJed Brown } 6597552f7358SJed Brown } 6598552f7358SJed Brown } 6599e6ccafaeSMatthew G Knepley *loff += dof; 6600552f7358SJed Brown PetscFunctionReturn(0); 6601552f7358SJed Brown } 6602552f7358SJed Brown 66037e29afd2SMatthew G. Knepley /* 660436fa2b79SJed Brown DMPlexGetIndicesPointFields_Internal - gets section indices for a point in its canonical ordering. 66057e29afd2SMatthew G. Knepley 660636fa2b79SJed Brown Input Parameters: 660736fa2b79SJed Brown + section - a section (global or local) 660836fa2b79SJed Brown - islocal - PETSC_TRUE if requesting local indices (i.e., section is local); PETSC_FALSE for global 660936fa2b79SJed Brown . point - point within section 661036fa2b79SJed Brown . off - The offset of this point in the (local or global) indexed space - should match islocal and (usually) the section 661136fa2b79SJed Brown . foffs - array of length numFields containing the offset in canonical point ordering (the location in indices) of each field 661236fa2b79SJed Brown . setBC - identify constrained (boundary condition) points via involution. 661336fa2b79SJed Brown . perms - perms[f][permsoff][:] is a permutation of dofs within each field 661436fa2b79SJed Brown . permsoff - offset 661536fa2b79SJed Brown - indperm - index permutation 661636fa2b79SJed Brown 661736fa2b79SJed Brown Output Parameter: 661836fa2b79SJed Brown . foffs - each entry is incremented by the number of (unconstrained if setBC=FALSE) dofs in that field 661936fa2b79SJed Brown . indices - array to hold indices (as defined by section) of each dof associated with point 662036fa2b79SJed Brown 662136fa2b79SJed Brown Notes: 662236fa2b79SJed Brown If section is local and setBC=true, there is no distinction between constrained and unconstrained dofs. 662336fa2b79SJed Brown If section is local and setBC=false, the indices for constrained points are the involution -(i+1) of their position 662436fa2b79SJed Brown in the local vector. 662536fa2b79SJed Brown 662636fa2b79SJed Brown If section is global and setBC=false, the indices for constrained points are negative (and their value is not 662736fa2b79SJed Brown significant). It is invalid to call with a global section and setBC=true. 662836fa2b79SJed Brown 662936fa2b79SJed Brown Developer Note: 663036fa2b79SJed Brown The section is only used for field layout, so islocal is technically a statement about the offset (off). At some point 663136fa2b79SJed Brown in the future, global sections may have fields set, in which case we could pass the global section and obtain the 663236fa2b79SJed Brown offset could be obtained from the section instead of passing it explicitly as we do now. 663336fa2b79SJed Brown 663436fa2b79SJed Brown Example: 663536fa2b79SJed Brown Suppose a point contains one field with three components, and for which the unconstrained indices are {10, 11, 12}. 663636fa2b79SJed Brown When the middle component is constrained, we get the array {10, -12, 12} for (islocal=TRUE, setBC=FALSE). 663736fa2b79SJed Brown Note that -12 is the involution of 11, so the user can involute negative indices to recover local indices. 663836fa2b79SJed Brown The global vector does not store constrained dofs, so when this function returns global indices, say {110, -112, 111}, the value of -112 is an arbitrary flag that should not be interpreted beyond its sign. 663936fa2b79SJed Brown 664036fa2b79SJed Brown Level: developer 66417e29afd2SMatthew G. Knepley */ 664236fa2b79SJed Brown PetscErrorCode DMPlexGetIndicesPointFields_Internal(PetscSection section, PetscBool islocal, PetscInt point, PetscInt off, PetscInt foffs[], PetscBool setBC, const PetscInt ***perms, PetscInt permsoff, const PetscInt indperm[], PetscInt indices[]) 6643a6dfd86eSKarl Rupp { 6644552f7358SJed Brown PetscInt numFields, foff, f; 6645552f7358SJed Brown 6646552f7358SJed Brown PetscFunctionBegin; 664708401ef6SPierre Jolivet PetscCheck(islocal || !setBC,PetscObjectComm((PetscObject)section),PETSC_ERR_ARG_INCOMP,"setBC incompatible with global indices; use a local section or disable setBC"); 66489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 6649552f7358SJed Brown for (f = 0, foff = 0; f < numFields; ++f) { 66504acb8e1eSToby Isaac PetscInt fdof, cfdof; 6651552f7358SJed Brown const PetscInt *fcdofs; /* The indices of the constrained dofs for field f on this point */ 66524acb8e1eSToby Isaac PetscInt cind = 0, b; 66534acb8e1eSToby Isaac const PetscInt *perm = (perms && perms[f]) ? perms[f][permsoff] : NULL; 6654552f7358SJed Brown 66559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 66569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, point, f, &cfdof)); 6657552f7358SJed Brown if (!cfdof || setBC) { 665805586334SMatthew G. Knepley for (b = 0; b < fdof; ++b) { 665905586334SMatthew G. Knepley const PetscInt preind = perm ? foffs[f]+perm[b] : foffs[f]+b; 666005586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 666105586334SMatthew G. Knepley 666205586334SMatthew G. Knepley indices[ind] = off+foff+b; 666305586334SMatthew G. Knepley } 6664552f7358SJed Brown } else { 66659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(section, point, f, &fcdofs)); 666605586334SMatthew G. Knepley for (b = 0; b < fdof; ++b) { 666705586334SMatthew G. Knepley const PetscInt preind = perm ? foffs[f]+perm[b] : foffs[f]+b; 666805586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 666905586334SMatthew G. Knepley 66704acb8e1eSToby Isaac if ((cind < cfdof) && (b == fcdofs[cind])) { 667105586334SMatthew G. Knepley indices[ind] = -(off+foff+b+1); 6672552f7358SJed Brown ++cind; 6673552f7358SJed Brown } else { 667436fa2b79SJed Brown indices[ind] = off + foff + b - (islocal ? 0 : cind); 6675552f7358SJed Brown } 6676552f7358SJed Brown } 6677552f7358SJed Brown } 667836fa2b79SJed Brown foff += (setBC || islocal ? fdof : (fdof - cfdof)); 6679552f7358SJed Brown foffs[f] += fdof; 6680552f7358SJed Brown } 6681552f7358SJed Brown PetscFunctionReturn(0); 6682552f7358SJed Brown } 6683552f7358SJed Brown 66847e29afd2SMatthew G. Knepley /* 66857e29afd2SMatthew G. Knepley This version believes the globalSection offsets for each field, rather than just the point offset 66867e29afd2SMatthew G. Knepley 66877e29afd2SMatthew G. Knepley . foffs - The offset into 'indices' for each field, since it is segregated by field 6688645102dcSJed Brown 6689645102dcSJed Brown Notes: 6690645102dcSJed Brown The semantics of this function relate to that of setBC=FALSE in DMPlexGetIndicesPointFields_Internal. 6691645102dcSJed Brown Since this function uses global indices, setBC=TRUE would be invalid, so no such argument exists. 66927e29afd2SMatthew G. Knepley */ 6693645102dcSJed Brown static PetscErrorCode DMPlexGetIndicesPointFieldsSplit_Internal(PetscSection section, PetscSection globalSection, PetscInt point, PetscInt foffs[], const PetscInt ***perms, PetscInt permsoff, const PetscInt indperm[], PetscInt indices[]) 66947e29afd2SMatthew G. Knepley { 66957e29afd2SMatthew G. Knepley PetscInt numFields, foff, f; 66967e29afd2SMatthew G. Knepley 66977e29afd2SMatthew G. Knepley PetscFunctionBegin; 66989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 66997e29afd2SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 67007e29afd2SMatthew G. Knepley PetscInt fdof, cfdof; 67017e29afd2SMatthew G. Knepley const PetscInt *fcdofs; /* The indices of the constrained dofs for field f on this point */ 67027e29afd2SMatthew G. Knepley PetscInt cind = 0, b; 67037e29afd2SMatthew G. Knepley const PetscInt *perm = (perms && perms[f]) ? perms[f][permsoff] : NULL; 67047e29afd2SMatthew G. Knepley 67059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 67069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, point, f, &cfdof)); 67079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(globalSection, point, f, &foff)); 6708645102dcSJed Brown if (!cfdof) { 670905586334SMatthew G. Knepley for (b = 0; b < fdof; ++b) { 671005586334SMatthew G. Knepley const PetscInt preind = perm ? foffs[f]+perm[b] : foffs[f]+b; 671105586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 671205586334SMatthew G. Knepley 671305586334SMatthew G. Knepley indices[ind] = foff+b; 671405586334SMatthew G. Knepley } 67157e29afd2SMatthew G. Knepley } else { 67169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(section, point, f, &fcdofs)); 671705586334SMatthew G. Knepley for (b = 0; b < fdof; ++b) { 671805586334SMatthew G. Knepley const PetscInt preind = perm ? foffs[f]+perm[b] : foffs[f]+b; 671905586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 672005586334SMatthew G. Knepley 67217e29afd2SMatthew G. Knepley if ((cind < cfdof) && (b == fcdofs[cind])) { 672205586334SMatthew G. Knepley indices[ind] = -(foff+b+1); 67237e29afd2SMatthew G. Knepley ++cind; 67247e29afd2SMatthew G. Knepley } else { 672505586334SMatthew G. Knepley indices[ind] = foff+b-cind; 67267e29afd2SMatthew G. Knepley } 67277e29afd2SMatthew G. Knepley } 67287e29afd2SMatthew G. Knepley } 67297e29afd2SMatthew G. Knepley foffs[f] += fdof; 67307e29afd2SMatthew G. Knepley } 67317e29afd2SMatthew G. Knepley PetscFunctionReturn(0); 67327e29afd2SMatthew G. Knepley } 67337e29afd2SMatthew G. Knepley 67344acb8e1eSToby Isaac PetscErrorCode DMPlexAnchorsModifyMat(DM dm, PetscSection section, PetscInt numPoints, PetscInt numIndices, const PetscInt points[], const PetscInt ***perms, const PetscScalar values[], PetscInt *outNumPoints, PetscInt *outNumIndices, PetscInt *outPoints[], PetscScalar *outValues[], PetscInt offsets[], PetscBool multiplyLeft) 6735d3d1a6afSToby Isaac { 6736d3d1a6afSToby Isaac Mat cMat; 6737d3d1a6afSToby Isaac PetscSection aSec, cSec; 6738d3d1a6afSToby Isaac IS aIS; 6739d3d1a6afSToby Isaac PetscInt aStart = -1, aEnd = -1; 6740d3d1a6afSToby Isaac const PetscInt *anchors; 6741e17c06e0SMatthew G. Knepley PetscInt numFields, f, p, q, newP = 0; 6742d3d1a6afSToby Isaac PetscInt newNumPoints = 0, newNumIndices = 0; 6743d3d1a6afSToby Isaac PetscInt *newPoints, *indices, *newIndices; 6744d3d1a6afSToby Isaac PetscInt maxAnchor, maxDof; 6745d3d1a6afSToby Isaac PetscInt newOffsets[32]; 6746d3d1a6afSToby Isaac PetscInt *pointMatOffsets[32]; 6747d3d1a6afSToby Isaac PetscInt *newPointOffsets[32]; 6748d3d1a6afSToby Isaac PetscScalar *pointMat[32]; 67496ecaa68aSToby Isaac PetscScalar *newValues=NULL,*tmpValues; 6750d3d1a6afSToby Isaac PetscBool anyConstrained = PETSC_FALSE; 6751d3d1a6afSToby Isaac 6752d3d1a6afSToby Isaac PetscFunctionBegin; 6753d3d1a6afSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6754d3d1a6afSToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 67559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 6756d3d1a6afSToby Isaac 67579566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS)); 6758d3d1a6afSToby Isaac /* if there are point-to-point constraints */ 6759d3d1a6afSToby Isaac if (aSec) { 67609566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(newOffsets, 32)); 67619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS,&anchors)); 67629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(aSec,&aStart,&aEnd)); 6763d3d1a6afSToby Isaac /* figure out how many points are going to be in the new element matrix 6764d3d1a6afSToby Isaac * (we allow double counting, because it's all just going to be summed 6765d3d1a6afSToby Isaac * into the global matrix anyway) */ 6766d3d1a6afSToby Isaac for (p = 0; p < 2*numPoints; p+=2) { 6767d3d1a6afSToby Isaac PetscInt b = points[p]; 67684b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 6769d3d1a6afSToby Isaac 67709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&bSecDof)); 67714b2f2278SToby Isaac if (!bSecDof) { 67724b2f2278SToby Isaac continue; 67734b2f2278SToby Isaac } 6774d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 67759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,b,&bDof)); 6776d3d1a6afSToby Isaac } 6777d3d1a6afSToby Isaac if (bDof) { 6778d3d1a6afSToby Isaac /* this point is constrained */ 6779d3d1a6afSToby Isaac /* it is going to be replaced by its anchors */ 6780d3d1a6afSToby Isaac PetscInt bOff, q; 6781d3d1a6afSToby Isaac 6782d3d1a6afSToby Isaac anyConstrained = PETSC_TRUE; 6783d3d1a6afSToby Isaac newNumPoints += bDof; 67849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,b,&bOff)); 6785d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 6786d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q]; 6787d3d1a6afSToby Isaac PetscInt aDof; 6788d3d1a6afSToby Isaac 67899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,a,&aDof)); 6790d3d1a6afSToby Isaac newNumIndices += aDof; 6791d3d1a6afSToby Isaac for (f = 0; f < numFields; ++f) { 6792d3d1a6afSToby Isaac PetscInt fDof; 6793d3d1a6afSToby Isaac 67949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, a, f, &fDof)); 6795d3d1a6afSToby Isaac newOffsets[f+1] += fDof; 6796d3d1a6afSToby Isaac } 6797d3d1a6afSToby Isaac } 6798d3d1a6afSToby Isaac } 6799d3d1a6afSToby Isaac else { 6800d3d1a6afSToby Isaac /* this point is not constrained */ 6801d3d1a6afSToby Isaac newNumPoints++; 68024b2f2278SToby Isaac newNumIndices += bSecDof; 6803d3d1a6afSToby Isaac for (f = 0; f < numFields; ++f) { 6804d3d1a6afSToby Isaac PetscInt fDof; 6805d3d1a6afSToby Isaac 68069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, b, f, &fDof)); 6807d3d1a6afSToby Isaac newOffsets[f+1] += fDof; 6808d3d1a6afSToby Isaac } 6809d3d1a6afSToby Isaac } 6810d3d1a6afSToby Isaac } 6811d3d1a6afSToby Isaac } 6812d3d1a6afSToby Isaac if (!anyConstrained) { 681372b80496SMatthew G. Knepley if (outNumPoints) *outNumPoints = 0; 681472b80496SMatthew G. Knepley if (outNumIndices) *outNumIndices = 0; 681572b80496SMatthew G. Knepley if (outPoints) *outPoints = NULL; 681672b80496SMatthew G. Knepley if (outValues) *outValues = NULL; 68179566063dSJacob Faibussowitsch if (aSec) PetscCall(ISRestoreIndices(aIS,&anchors)); 6818d3d1a6afSToby Isaac PetscFunctionReturn(0); 6819d3d1a6afSToby Isaac } 6820d3d1a6afSToby Isaac 68216ecaa68aSToby Isaac if (outNumPoints) *outNumPoints = newNumPoints; 68226ecaa68aSToby Isaac if (outNumIndices) *outNumIndices = newNumIndices; 68236ecaa68aSToby Isaac 6824f13f9184SToby Isaac for (f = 0; f < numFields; ++f) newOffsets[f+1] += newOffsets[f]; 6825d3d1a6afSToby Isaac 68266ecaa68aSToby Isaac if (!outPoints && !outValues) { 68276ecaa68aSToby Isaac if (offsets) { 68286ecaa68aSToby Isaac for (f = 0; f <= numFields; f++) { 68296ecaa68aSToby Isaac offsets[f] = newOffsets[f]; 68306ecaa68aSToby Isaac } 68316ecaa68aSToby Isaac } 68329566063dSJacob Faibussowitsch if (aSec) PetscCall(ISRestoreIndices(aIS,&anchors)); 68336ecaa68aSToby Isaac PetscFunctionReturn(0); 68346ecaa68aSToby Isaac } 68356ecaa68aSToby Isaac 68361dca8a05SBarry Smith PetscCheck(!numFields || newOffsets[numFields] == newNumIndices,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, newOffsets[numFields], newNumIndices); 6837d3d1a6afSToby Isaac 68389566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 6839d3d1a6afSToby Isaac 6840d3d1a6afSToby Isaac /* workspaces */ 6841d3d1a6afSToby Isaac if (numFields) { 6842d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 68439566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,numPoints+1,MPIU_INT,&pointMatOffsets[f])); 68449566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,numPoints+1,MPIU_INT,&newPointOffsets[f])); 6845d3d1a6afSToby Isaac } 6846d3d1a6afSToby Isaac } 6847d3d1a6afSToby Isaac else { 68489566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,numPoints+1,MPIU_INT,&pointMatOffsets[0])); 68499566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,numPoints,MPIU_INT,&newPointOffsets[0])); 6850d3d1a6afSToby Isaac } 6851d3d1a6afSToby Isaac 6852d3d1a6afSToby Isaac /* get workspaces for the point-to-point matrices */ 6853d3d1a6afSToby Isaac if (numFields) { 68544b2f2278SToby Isaac PetscInt totalOffset, totalMatOffset; 68554b2f2278SToby Isaac 6856d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 6857d3d1a6afSToby Isaac PetscInt b = points[2*p]; 68584b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 6859d3d1a6afSToby Isaac 68609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&bSecDof)); 68614b2f2278SToby Isaac if (!bSecDof) { 68624b2f2278SToby Isaac for (f = 0; f < numFields; f++) { 68634b2f2278SToby Isaac newPointOffsets[f][p + 1] = 0; 68644b2f2278SToby Isaac pointMatOffsets[f][p + 1] = 0; 68654b2f2278SToby Isaac } 68664b2f2278SToby Isaac continue; 68674b2f2278SToby Isaac } 6868d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 68699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec, b, &bDof)); 6870d3d1a6afSToby Isaac } 6871d3d1a6afSToby Isaac if (bDof) { 6872d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 6873d3d1a6afSToby Isaac PetscInt fDof, q, bOff, allFDof = 0; 6874d3d1a6afSToby Isaac 68759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, b, f, &fDof)); 68769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec, b, &bOff)); 6877d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 6878d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q]; 6879d3d1a6afSToby Isaac PetscInt aFDof; 6880d3d1a6afSToby Isaac 68819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, a, f, &aFDof)); 6882d3d1a6afSToby Isaac allFDof += aFDof; 6883d3d1a6afSToby Isaac } 6884d3d1a6afSToby Isaac newPointOffsets[f][p+1] = allFDof; 6885d3d1a6afSToby Isaac pointMatOffsets[f][p+1] = fDof * allFDof; 6886d3d1a6afSToby Isaac } 6887d3d1a6afSToby Isaac } 6888d3d1a6afSToby Isaac else { 6889d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 6890d3d1a6afSToby Isaac PetscInt fDof; 6891d3d1a6afSToby Isaac 68929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, b, f, &fDof)); 6893d3d1a6afSToby Isaac newPointOffsets[f][p+1] = fDof; 6894d3d1a6afSToby Isaac pointMatOffsets[f][p+1] = 0; 6895d3d1a6afSToby Isaac } 6896d3d1a6afSToby Isaac } 6897d3d1a6afSToby Isaac } 68984b2f2278SToby Isaac for (f = 0, totalOffset = 0, totalMatOffset = 0; f < numFields; f++) { 68994b2f2278SToby Isaac newPointOffsets[f][0] = totalOffset; 69004b2f2278SToby Isaac pointMatOffsets[f][0] = totalMatOffset; 6901d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 6902d3d1a6afSToby Isaac newPointOffsets[f][p+1] += newPointOffsets[f][p]; 6903d3d1a6afSToby Isaac pointMatOffsets[f][p+1] += pointMatOffsets[f][p]; 6904d3d1a6afSToby Isaac } 690519f70fd5SToby Isaac totalOffset = newPointOffsets[f][numPoints]; 690619f70fd5SToby Isaac totalMatOffset = pointMatOffsets[f][numPoints]; 69079566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,pointMatOffsets[f][numPoints],MPIU_SCALAR,&pointMat[f])); 6908d3d1a6afSToby Isaac } 6909d3d1a6afSToby Isaac } 6910d3d1a6afSToby Isaac else { 6911d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 6912d3d1a6afSToby Isaac PetscInt b = points[2*p]; 69134b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 6914d3d1a6afSToby Isaac 69159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&bSecDof)); 69164b2f2278SToby Isaac if (!bSecDof) { 69174b2f2278SToby Isaac newPointOffsets[0][p + 1] = 0; 69184b2f2278SToby Isaac pointMatOffsets[0][p + 1] = 0; 69194b2f2278SToby Isaac continue; 69204b2f2278SToby Isaac } 6921d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 69229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec, b, &bDof)); 6923d3d1a6afSToby Isaac } 6924d3d1a6afSToby Isaac if (bDof) { 69254b2f2278SToby Isaac PetscInt bOff, q, allDof = 0; 6926d3d1a6afSToby Isaac 69279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec, b, &bOff)); 6928d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 6929d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q], aDof; 6930d3d1a6afSToby Isaac 69319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, a, &aDof)); 6932d3d1a6afSToby Isaac allDof += aDof; 6933d3d1a6afSToby Isaac } 6934d3d1a6afSToby Isaac newPointOffsets[0][p+1] = allDof; 69354b2f2278SToby Isaac pointMatOffsets[0][p+1] = bSecDof * allDof; 6936d3d1a6afSToby Isaac } 6937d3d1a6afSToby Isaac else { 69384b2f2278SToby Isaac newPointOffsets[0][p+1] = bSecDof; 6939d3d1a6afSToby Isaac pointMatOffsets[0][p+1] = 0; 6940d3d1a6afSToby Isaac } 6941d3d1a6afSToby Isaac } 6942d3d1a6afSToby Isaac newPointOffsets[0][0] = 0; 6943d3d1a6afSToby Isaac pointMatOffsets[0][0] = 0; 6944d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 6945d3d1a6afSToby Isaac newPointOffsets[0][p+1] += newPointOffsets[0][p]; 6946d3d1a6afSToby Isaac pointMatOffsets[0][p+1] += pointMatOffsets[0][p]; 6947d3d1a6afSToby Isaac } 69489566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,pointMatOffsets[0][numPoints],MPIU_SCALAR,&pointMat[0])); 6949d3d1a6afSToby Isaac } 6950d3d1a6afSToby Isaac 69516ecaa68aSToby Isaac /* output arrays */ 69529566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,2*newNumPoints,MPIU_INT,&newPoints)); 69536ecaa68aSToby Isaac 6954d3d1a6afSToby Isaac /* get the point-to-point matrices; construct newPoints */ 69559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(aSec, &maxAnchor)); 69569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 69579566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,maxDof,MPIU_INT,&indices)); 69589566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,maxAnchor*maxDof,MPIU_INT,&newIndices)); 6959d3d1a6afSToby Isaac if (numFields) { 6960d3d1a6afSToby Isaac for (p = 0, newP = 0; p < numPoints; p++) { 6961d3d1a6afSToby Isaac PetscInt b = points[2*p]; 6962d3d1a6afSToby Isaac PetscInt o = points[2*p+1]; 69634b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 6964d3d1a6afSToby Isaac 69659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, b, &bSecDof)); 69664b2f2278SToby Isaac if (!bSecDof) { 69674b2f2278SToby Isaac continue; 69684b2f2278SToby Isaac } 6969d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 69709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec, b, &bDof)); 6971d3d1a6afSToby Isaac } 6972d3d1a6afSToby Isaac if (bDof) { 6973d3d1a6afSToby Isaac PetscInt fStart[32], fEnd[32], fAnchorStart[32], fAnchorEnd[32], bOff, q; 6974d3d1a6afSToby Isaac 6975d3d1a6afSToby Isaac fStart[0] = 0; 6976d3d1a6afSToby Isaac fEnd[0] = 0; 6977d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 6978d3d1a6afSToby Isaac PetscInt fDof; 6979d3d1a6afSToby Isaac 69809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(cSec, b, f, &fDof)); 6981d3d1a6afSToby Isaac fStart[f+1] = fStart[f] + fDof; 6982d3d1a6afSToby Isaac fEnd[f+1] = fStart[f+1]; 6983d3d1a6afSToby Isaac } 69849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cSec, b, &bOff)); 69859566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(cSec, PETSC_TRUE, b, bOff, fEnd, PETSC_TRUE, perms, p, NULL, indices)); 6986d3d1a6afSToby Isaac 6987d3d1a6afSToby Isaac fAnchorStart[0] = 0; 6988d3d1a6afSToby Isaac fAnchorEnd[0] = 0; 6989d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 6990d3d1a6afSToby Isaac PetscInt fDof = newPointOffsets[f][p + 1] - newPointOffsets[f][p]; 6991d3d1a6afSToby Isaac 6992d3d1a6afSToby Isaac fAnchorStart[f+1] = fAnchorStart[f] + fDof; 6993d3d1a6afSToby Isaac fAnchorEnd[f+1] = fAnchorStart[f + 1]; 6994d3d1a6afSToby Isaac } 69959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec, b, &bOff)); 6996d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 6997d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q], aOff; 6998d3d1a6afSToby Isaac 6999d3d1a6afSToby Isaac /* we take the orientation of ap into account in the order that we constructed the indices above: the newly added points have no orientation */ 7000d3d1a6afSToby Isaac newPoints[2*(newP + q)] = a; 7001d3d1a6afSToby Isaac newPoints[2*(newP + q) + 1] = 0; 70029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, a, &aOff)); 70039566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(section, PETSC_TRUE, a, aOff, fAnchorEnd, PETSC_TRUE, NULL, -1, NULL, newIndices)); 7004d3d1a6afSToby Isaac } 7005d3d1a6afSToby Isaac newP += bDof; 7006d3d1a6afSToby Isaac 70076ecaa68aSToby Isaac if (outValues) { 7008d3d1a6afSToby Isaac /* get the point-to-point submatrix */ 7009d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 70109566063dSJacob Faibussowitsch PetscCall(MatGetValues(cMat,fEnd[f]-fStart[f],indices + fStart[f],fAnchorEnd[f] - fAnchorStart[f],newIndices + fAnchorStart[f],pointMat[f] + pointMatOffsets[f][p])); 7011d3d1a6afSToby Isaac } 7012d3d1a6afSToby Isaac } 70136ecaa68aSToby Isaac } 7014d3d1a6afSToby Isaac else { 7015d3d1a6afSToby Isaac newPoints[2 * newP] = b; 7016d3d1a6afSToby Isaac newPoints[2 * newP + 1] = o; 7017d3d1a6afSToby Isaac newP++; 7018d3d1a6afSToby Isaac } 7019d3d1a6afSToby Isaac } 7020d3d1a6afSToby Isaac } else { 7021d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7022d3d1a6afSToby Isaac PetscInt b = points[2*p]; 7023d3d1a6afSToby Isaac PetscInt o = points[2*p+1]; 70244b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 7025d3d1a6afSToby Isaac 70269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, b, &bSecDof)); 70274b2f2278SToby Isaac if (!bSecDof) { 70284b2f2278SToby Isaac continue; 70294b2f2278SToby Isaac } 7030d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 70319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec, b, &bDof)); 7032d3d1a6afSToby Isaac } 7033d3d1a6afSToby Isaac if (bDof) { 7034d3d1a6afSToby Isaac PetscInt bEnd = 0, bAnchorEnd = 0, bOff; 7035d3d1a6afSToby Isaac 70369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cSec, b, &bOff)); 70379566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(cSec, PETSC_TRUE, b, bOff, &bEnd, PETSC_TRUE, (perms && perms[0]) ? perms[0][p] : NULL, NULL, indices)); 7038d3d1a6afSToby Isaac 70399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset (aSec, b, &bOff)); 7040d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 7041d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q], aOff; 7042d3d1a6afSToby Isaac 7043d3d1a6afSToby Isaac /* we take the orientation of ap into account in the order that we constructed the indices above: the newly added points have no orientation */ 7044d3d1a6afSToby Isaac 7045d3d1a6afSToby Isaac newPoints[2*(newP + q)] = a; 7046d3d1a6afSToby Isaac newPoints[2*(newP + q) + 1] = 0; 70479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, a, &aOff)); 70489566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(section, PETSC_TRUE, a, aOff, &bAnchorEnd, PETSC_TRUE, NULL, NULL, newIndices)); 7049d3d1a6afSToby Isaac } 7050d3d1a6afSToby Isaac newP += bDof; 7051d3d1a6afSToby Isaac 7052d3d1a6afSToby Isaac /* get the point-to-point submatrix */ 70536ecaa68aSToby Isaac if (outValues) { 70549566063dSJacob Faibussowitsch PetscCall(MatGetValues(cMat,bEnd,indices,bAnchorEnd,newIndices,pointMat[0] + pointMatOffsets[0][p])); 7055d3d1a6afSToby Isaac } 70566ecaa68aSToby Isaac } 7057d3d1a6afSToby Isaac else { 7058d3d1a6afSToby Isaac newPoints[2 * newP] = b; 7059d3d1a6afSToby Isaac newPoints[2 * newP + 1] = o; 7060d3d1a6afSToby Isaac newP++; 7061d3d1a6afSToby Isaac } 7062d3d1a6afSToby Isaac } 7063d3d1a6afSToby Isaac } 7064d3d1a6afSToby Isaac 70656ecaa68aSToby Isaac if (outValues) { 70669566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,newNumIndices*numIndices,MPIU_SCALAR,&tmpValues)); 70679566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(tmpValues,newNumIndices*numIndices)); 7068d3d1a6afSToby Isaac /* multiply constraints on the right */ 7069d3d1a6afSToby Isaac if (numFields) { 7070d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 7071d3d1a6afSToby Isaac PetscInt oldOff = offsets[f]; 7072d3d1a6afSToby Isaac 7073d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7074d3d1a6afSToby Isaac PetscInt cStart = newPointOffsets[f][p]; 7075d3d1a6afSToby Isaac PetscInt b = points[2 * p]; 7076d3d1a6afSToby Isaac PetscInt c, r, k; 7077d3d1a6afSToby Isaac PetscInt dof; 7078d3d1a6afSToby Isaac 70799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,b,f,&dof)); 70804b2f2278SToby Isaac if (!dof) { 70814b2f2278SToby Isaac continue; 70824b2f2278SToby Isaac } 7083d3d1a6afSToby Isaac if (pointMatOffsets[f][p] < pointMatOffsets[f][p + 1]) { 7084d3d1a6afSToby Isaac PetscInt nCols = newPointOffsets[f][p+1]-cStart; 7085d3d1a6afSToby Isaac const PetscScalar *mat = pointMat[f] + pointMatOffsets[f][p]; 7086d3d1a6afSToby Isaac 7087d3d1a6afSToby Isaac for (r = 0; r < numIndices; r++) { 7088d3d1a6afSToby Isaac for (c = 0; c < nCols; c++) { 7089d3d1a6afSToby Isaac for (k = 0; k < dof; k++) { 70904acb8e1eSToby Isaac tmpValues[r * newNumIndices + cStart + c] += values[r * numIndices + oldOff + k] * mat[k * nCols + c]; 7091d3d1a6afSToby Isaac } 7092d3d1a6afSToby Isaac } 7093d3d1a6afSToby Isaac } 7094d3d1a6afSToby Isaac } 7095d3d1a6afSToby Isaac else { 7096d3d1a6afSToby Isaac /* copy this column as is */ 7097d3d1a6afSToby Isaac for (r = 0; r < numIndices; r++) { 7098d3d1a6afSToby Isaac for (c = 0; c < dof; c++) { 7099d3d1a6afSToby Isaac tmpValues[r * newNumIndices + cStart + c] = values[r * numIndices + oldOff + c]; 7100d3d1a6afSToby Isaac } 7101d3d1a6afSToby Isaac } 7102d3d1a6afSToby Isaac } 7103d3d1a6afSToby Isaac oldOff += dof; 7104d3d1a6afSToby Isaac } 7105d3d1a6afSToby Isaac } 7106d3d1a6afSToby Isaac } 7107d3d1a6afSToby Isaac else { 7108d3d1a6afSToby Isaac PetscInt oldOff = 0; 7109d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7110d3d1a6afSToby Isaac PetscInt cStart = newPointOffsets[0][p]; 7111d3d1a6afSToby Isaac PetscInt b = points[2 * p]; 7112d3d1a6afSToby Isaac PetscInt c, r, k; 7113d3d1a6afSToby Isaac PetscInt dof; 7114d3d1a6afSToby Isaac 71159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&dof)); 71164b2f2278SToby Isaac if (!dof) { 71174b2f2278SToby Isaac continue; 71184b2f2278SToby Isaac } 7119d3d1a6afSToby Isaac if (pointMatOffsets[0][p] < pointMatOffsets[0][p + 1]) { 7120d3d1a6afSToby Isaac PetscInt nCols = newPointOffsets[0][p+1]-cStart; 7121d3d1a6afSToby Isaac const PetscScalar *mat = pointMat[0] + pointMatOffsets[0][p]; 7122d3d1a6afSToby Isaac 7123d3d1a6afSToby Isaac for (r = 0; r < numIndices; r++) { 7124d3d1a6afSToby Isaac for (c = 0; c < nCols; c++) { 7125d3d1a6afSToby Isaac for (k = 0; k < dof; k++) { 7126d3d1a6afSToby Isaac tmpValues[r * newNumIndices + cStart + c] += mat[k * nCols + c] * values[r * numIndices + oldOff + k]; 7127d3d1a6afSToby Isaac } 7128d3d1a6afSToby Isaac } 7129d3d1a6afSToby Isaac } 7130d3d1a6afSToby Isaac } 7131d3d1a6afSToby Isaac else { 7132d3d1a6afSToby Isaac /* copy this column as is */ 7133d3d1a6afSToby Isaac for (r = 0; r < numIndices; r++) { 7134d3d1a6afSToby Isaac for (c = 0; c < dof; c++) { 7135d3d1a6afSToby Isaac tmpValues[r * newNumIndices + cStart + c] = values[r * numIndices + oldOff + c]; 7136d3d1a6afSToby Isaac } 7137d3d1a6afSToby Isaac } 7138d3d1a6afSToby Isaac } 7139d3d1a6afSToby Isaac oldOff += dof; 7140d3d1a6afSToby Isaac } 7141d3d1a6afSToby Isaac } 7142d3d1a6afSToby Isaac 71436ecaa68aSToby Isaac if (multiplyLeft) { 71449566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,newNumIndices*newNumIndices,MPIU_SCALAR,&newValues)); 71459566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(newValues,newNumIndices*newNumIndices)); 7146d3d1a6afSToby Isaac /* multiply constraints transpose on the left */ 7147d3d1a6afSToby Isaac if (numFields) { 7148d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 7149d3d1a6afSToby Isaac PetscInt oldOff = offsets[f]; 7150d3d1a6afSToby Isaac 7151d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7152d3d1a6afSToby Isaac PetscInt rStart = newPointOffsets[f][p]; 7153d3d1a6afSToby Isaac PetscInt b = points[2 * p]; 7154d3d1a6afSToby Isaac PetscInt c, r, k; 7155d3d1a6afSToby Isaac PetscInt dof; 7156d3d1a6afSToby Isaac 71579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,b,f,&dof)); 7158d3d1a6afSToby Isaac if (pointMatOffsets[f][p] < pointMatOffsets[f][p + 1]) { 7159d3d1a6afSToby Isaac PetscInt nRows = newPointOffsets[f][p+1]-rStart; 7160d3d1a6afSToby Isaac const PetscScalar *PETSC_RESTRICT mat = pointMat[f] + pointMatOffsets[f][p]; 7161d3d1a6afSToby Isaac 7162d3d1a6afSToby Isaac for (r = 0; r < nRows; r++) { 7163d3d1a6afSToby Isaac for (c = 0; c < newNumIndices; c++) { 7164d3d1a6afSToby Isaac for (k = 0; k < dof; k++) { 7165d3d1a6afSToby Isaac newValues[(rStart + r) * newNumIndices + c] += mat[k * nRows + r] * tmpValues[(oldOff + k) * newNumIndices + c]; 7166d3d1a6afSToby Isaac } 7167d3d1a6afSToby Isaac } 7168d3d1a6afSToby Isaac } 7169d3d1a6afSToby Isaac } 7170d3d1a6afSToby Isaac else { 7171d3d1a6afSToby Isaac /* copy this row as is */ 7172d3d1a6afSToby Isaac for (r = 0; r < dof; r++) { 7173d3d1a6afSToby Isaac for (c = 0; c < newNumIndices; c++) { 7174d3d1a6afSToby Isaac newValues[(rStart + r) * newNumIndices + c] = tmpValues[(oldOff + r) * newNumIndices + c]; 7175d3d1a6afSToby Isaac } 7176d3d1a6afSToby Isaac } 7177d3d1a6afSToby Isaac } 7178d3d1a6afSToby Isaac oldOff += dof; 7179d3d1a6afSToby Isaac } 7180d3d1a6afSToby Isaac } 7181d3d1a6afSToby Isaac } 7182d3d1a6afSToby Isaac else { 7183d3d1a6afSToby Isaac PetscInt oldOff = 0; 7184d3d1a6afSToby Isaac 7185d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7186d3d1a6afSToby Isaac PetscInt rStart = newPointOffsets[0][p]; 7187d3d1a6afSToby Isaac PetscInt b = points[2 * p]; 7188d3d1a6afSToby Isaac PetscInt c, r, k; 7189d3d1a6afSToby Isaac PetscInt dof; 7190d3d1a6afSToby Isaac 71919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&dof)); 7192d3d1a6afSToby Isaac if (pointMatOffsets[0][p] < pointMatOffsets[0][p + 1]) { 7193d3d1a6afSToby Isaac PetscInt nRows = newPointOffsets[0][p+1]-rStart; 7194d3d1a6afSToby Isaac const PetscScalar *PETSC_RESTRICT mat = pointMat[0] + pointMatOffsets[0][p]; 7195d3d1a6afSToby Isaac 7196d3d1a6afSToby Isaac for (r = 0; r < nRows; r++) { 7197d3d1a6afSToby Isaac for (c = 0; c < newNumIndices; c++) { 7198d3d1a6afSToby Isaac for (k = 0; k < dof; k++) { 7199d3d1a6afSToby Isaac newValues[(rStart + r) * newNumIndices + c] += mat[k * nRows + r] * tmpValues[(oldOff + k) * newNumIndices + c]; 7200d3d1a6afSToby Isaac } 7201d3d1a6afSToby Isaac } 7202d3d1a6afSToby Isaac } 7203d3d1a6afSToby Isaac } 7204d3d1a6afSToby Isaac else { 7205d3d1a6afSToby Isaac /* copy this row as is */ 72069fc93327SToby Isaac for (r = 0; r < dof; r++) { 7207d3d1a6afSToby Isaac for (c = 0; c < newNumIndices; c++) { 7208d3d1a6afSToby Isaac newValues[(rStart + r) * newNumIndices + c] = tmpValues[(oldOff + r) * newNumIndices + c]; 7209d3d1a6afSToby Isaac } 7210d3d1a6afSToby Isaac } 7211d3d1a6afSToby Isaac } 7212d3d1a6afSToby Isaac oldOff += dof; 7213d3d1a6afSToby Isaac } 7214d3d1a6afSToby Isaac } 7215d3d1a6afSToby Isaac 72169566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,newNumIndices*numIndices,MPIU_SCALAR,&tmpValues)); 72176ecaa68aSToby Isaac } 72186ecaa68aSToby Isaac else { 72196ecaa68aSToby Isaac newValues = tmpValues; 72206ecaa68aSToby Isaac } 72216ecaa68aSToby Isaac } 72226ecaa68aSToby Isaac 7223d3d1a6afSToby Isaac /* clean up */ 72249566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,maxDof,MPIU_INT,&indices)); 72259566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,maxAnchor*maxDof,MPIU_INT,&newIndices)); 72266ecaa68aSToby Isaac 7227d3d1a6afSToby Isaac if (numFields) { 7228d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 72299566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,pointMatOffsets[f][numPoints],MPIU_SCALAR,&pointMat[f])); 72309566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,numPoints+1,MPIU_INT,&pointMatOffsets[f])); 72319566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,numPoints+1,MPIU_INT,&newPointOffsets[f])); 7232d3d1a6afSToby Isaac } 7233d3d1a6afSToby Isaac } 7234d3d1a6afSToby Isaac else { 72359566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,pointMatOffsets[0][numPoints],MPIU_SCALAR,&pointMat[0])); 72369566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,numPoints+1,MPIU_INT,&pointMatOffsets[0])); 72379566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,numPoints+1,MPIU_INT,&newPointOffsets[0])); 7238d3d1a6afSToby Isaac } 72399566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS,&anchors)); 7240d3d1a6afSToby Isaac 7241d3d1a6afSToby Isaac /* output */ 72426ecaa68aSToby Isaac if (outPoints) { 7243d3d1a6afSToby Isaac *outPoints = newPoints; 72446ecaa68aSToby Isaac } 72456ecaa68aSToby Isaac else { 72469566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,2*newNumPoints,MPIU_INT,&newPoints)); 72476ecaa68aSToby Isaac } 724831620726SToby Isaac if (outValues) { 7249d3d1a6afSToby Isaac *outValues = newValues; 72506ecaa68aSToby Isaac } 72516ecaa68aSToby Isaac for (f = 0; f <= numFields; f++) { 7252d3d1a6afSToby Isaac offsets[f] = newOffsets[f]; 7253d3d1a6afSToby Isaac } 7254d3d1a6afSToby Isaac PetscFunctionReturn(0); 7255d3d1a6afSToby Isaac } 7256d3d1a6afSToby Isaac 72574a1e0b3eSMatthew G. Knepley /*@C 725871f0bbf9SMatthew G. Knepley DMPlexGetClosureIndices - Gets the global dof indices associated with the closure of the given point within the provided sections. 72597cd05799SMatthew G. Knepley 72607cd05799SMatthew G. Knepley Not collective 72617cd05799SMatthew G. Knepley 72627cd05799SMatthew G. Knepley Input Parameters: 72637cd05799SMatthew G. Knepley + dm - The DM 726471f0bbf9SMatthew G. Knepley . section - The PetscSection describing the points (a local section) 726571f0bbf9SMatthew G. Knepley . idxSection - The PetscSection from which to obtain indices (may be local or global) 726671f0bbf9SMatthew G. Knepley . point - The point defining the closure 726771f0bbf9SMatthew G. Knepley - useClPerm - Use the closure point permutation if available 72687cd05799SMatthew G. Knepley 726971f0bbf9SMatthew G. Knepley Output Parameters: 727071f0bbf9SMatthew G. Knepley + numIndices - The number of dof indices in the closure of point with the input sections 727171f0bbf9SMatthew G. Knepley . indices - The dof indices 727271f0bbf9SMatthew G. Knepley . outOffsets - Array to write the field offsets into, or NULL 727371f0bbf9SMatthew G. Knepley - values - The input values, which may be modified if sign flips are induced by the point symmetries, or NULL 72747cd05799SMatthew G. Knepley 727536fa2b79SJed Brown Notes: 727636fa2b79SJed Brown Must call DMPlexRestoreClosureIndices() to free allocated memory 727736fa2b79SJed Brown 727836fa2b79SJed Brown If idxSection is global, any constrained dofs (see DMAddBoundary(), for example) will get negative indices. The value 727936fa2b79SJed Brown of those indices is not significant. If idxSection is local, the constrained dofs will yield the involution -(idx+1) 728036fa2b79SJed Brown of their index in a local vector. A caller who does not wish to distinguish those points may recover the nonnegative 728136fa2b79SJed Brown indices via involution, -(-(idx+1)+1)==idx. Local indices are provided when idxSection == section, otherwise global 728236fa2b79SJed Brown indices (with the above semantics) are implied. 72837cd05799SMatthew G. Knepley 72847cd05799SMatthew G. Knepley Level: advanced 72857cd05799SMatthew G. Knepley 7286db781477SPatrick Sanan .seealso `DMPlexRestoreClosureIndices()`, `DMPlexVecGetClosure()`, `DMPlexMatSetClosure()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 72874a1e0b3eSMatthew G. Knepley @*/ 728871f0bbf9SMatthew G. Knepley PetscErrorCode DMPlexGetClosureIndices(DM dm, PetscSection section, PetscSection idxSection, PetscInt point, PetscBool useClPerm, 728971f0bbf9SMatthew G. Knepley PetscInt *numIndices, PetscInt *indices[], PetscInt outOffsets[], PetscScalar *values[]) 72907773e69fSMatthew G. Knepley { 729171f0bbf9SMatthew G. Knepley /* Closure ordering */ 72927773e69fSMatthew G. Knepley PetscSection clSection; 72937773e69fSMatthew G. Knepley IS clPoints; 729471f0bbf9SMatthew G. Knepley const PetscInt *clp; 729571f0bbf9SMatthew G. Knepley PetscInt *points; 729671f0bbf9SMatthew G. Knepley const PetscInt *clperm = NULL; 729771f0bbf9SMatthew G. Knepley /* Dof permutation and sign flips */ 72984acb8e1eSToby Isaac const PetscInt **perms[32] = {NULL}; 729971f0bbf9SMatthew G. Knepley const PetscScalar **flips[32] = {NULL}; 730071f0bbf9SMatthew G. Knepley PetscScalar *valCopy = NULL; 730171f0bbf9SMatthew G. Knepley /* Hanging node constraints */ 730271f0bbf9SMatthew G. Knepley PetscInt *pointsC = NULL; 730371f0bbf9SMatthew G. Knepley PetscScalar *valuesC = NULL; 730471f0bbf9SMatthew G. Knepley PetscInt NclC, NiC; 730571f0bbf9SMatthew G. Knepley 730671f0bbf9SMatthew G. Knepley PetscInt *idx; 730771f0bbf9SMatthew G. Knepley PetscInt Nf, Ncl, Ni = 0, offsets[32], p, f; 730871f0bbf9SMatthew G. Knepley PetscBool isLocal = (section == idxSection) ? PETSC_TRUE : PETSC_FALSE; 73097773e69fSMatthew G. Knepley 731071f0bbf9SMatthew G. Knepley PetscFunctionBeginHot; 73117773e69fSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73127773e69fSMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 731336fa2b79SJed Brown PetscValidHeaderSpecific(idxSection, PETSC_SECTION_CLASSID, 3); 7314dadcf809SJacob Faibussowitsch if (numIndices) PetscValidIntPointer(numIndices, 6); 731571f0bbf9SMatthew G. Knepley if (indices) PetscValidPointer(indices, 7); 7316dadcf809SJacob Faibussowitsch if (outOffsets) PetscValidIntPointer(outOffsets, 8); 731771f0bbf9SMatthew G. Knepley if (values) PetscValidPointer(values, 9); 73189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 731963a3b9bcSJacob Faibussowitsch PetscCheck(Nf <= 31,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Number of fields %" PetscInt_FMT " limited to 31", Nf); 73209566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(offsets, 32)); 732171f0bbf9SMatthew G. Knepley /* 1) Get points in closure */ 73229566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm, section, point, &Ncl, &points, &clSection, &clPoints, &clp)); 7323c459fbc1SJed Brown if (useClPerm) { 7324c459fbc1SJed Brown PetscInt depth, clsize; 73259566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &depth)); 7326c459fbc1SJed Brown for (clsize=0,p=0; p<Ncl; p++) { 7327c459fbc1SJed Brown PetscInt dof; 73289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[2*p], &dof)); 7329c459fbc1SJed Brown clsize += dof; 7330c459fbc1SJed Brown } 73319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, (PetscObject) dm, depth, clsize, &clperm)); 7332c459fbc1SJed Brown } 733371f0bbf9SMatthew G. Knepley /* 2) Get number of indices on these points and field offsets from section */ 733471f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl*2; p += 2) { 73357773e69fSMatthew G. Knepley PetscInt dof, fdof; 73367773e69fSMatthew G. Knepley 73379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[p], &dof)); 73387773e69fSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 73399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, points[p], f, &fdof)); 73407773e69fSMatthew G. Knepley offsets[f+1] += fdof; 73417773e69fSMatthew G. Knepley } 734271f0bbf9SMatthew G. Knepley Ni += dof; 73437773e69fSMatthew G. Knepley } 73447773e69fSMatthew G. Knepley for (f = 1; f < Nf; ++f) offsets[f+1] += offsets[f]; 73451dca8a05SBarry Smith PetscCheck(!Nf || offsets[Nf] == Ni,PetscObjectComm((PetscObject) dm), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, offsets[Nf], Ni); 734671f0bbf9SMatthew G. Knepley /* 3) Get symmetries and sign flips. Apply sign flips to values if passed in (only works for square values matrix) */ 734771f0bbf9SMatthew G. Knepley for (f = 0; f < PetscMax(1, Nf); ++f) { 73489566063dSJacob Faibussowitsch if (Nf) PetscCall(PetscSectionGetFieldPointSyms(section, f, Ncl, points, &perms[f], &flips[f])); 73499566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetPointSyms(section, Ncl, points, &perms[f], &flips[f])); 735071f0bbf9SMatthew G. Knepley /* may need to apply sign changes to the element matrix */ 735171f0bbf9SMatthew G. Knepley if (values && flips[f]) { 735271f0bbf9SMatthew G. Knepley PetscInt foffset = offsets[f]; 73536ecaa68aSToby Isaac 735471f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl; ++p) { 735571f0bbf9SMatthew G. Knepley PetscInt pnt = points[2*p], fdof; 735671f0bbf9SMatthew G. Knepley const PetscScalar *flip = flips[f] ? flips[f][p] : NULL; 735771f0bbf9SMatthew G. Knepley 73589566063dSJacob Faibussowitsch if (!Nf) PetscCall(PetscSectionGetDof(section, pnt, &fdof)); 73599566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetFieldDof(section, pnt, f, &fdof)); 736071f0bbf9SMatthew G. Knepley if (flip) { 736171f0bbf9SMatthew G. Knepley PetscInt i, j, k; 736271f0bbf9SMatthew G. Knepley 736371f0bbf9SMatthew G. Knepley if (!valCopy) { 73649566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Ni*Ni, MPIU_SCALAR, &valCopy)); 736571f0bbf9SMatthew G. Knepley for (j = 0; j < Ni * Ni; ++j) valCopy[j] = (*values)[j]; 736671f0bbf9SMatthew G. Knepley *values = valCopy; 736771f0bbf9SMatthew G. Knepley } 736871f0bbf9SMatthew G. Knepley for (i = 0; i < fdof; ++i) { 736971f0bbf9SMatthew G. Knepley PetscScalar fval = flip[i]; 737071f0bbf9SMatthew G. Knepley 737171f0bbf9SMatthew G. Knepley for (k = 0; k < Ni; ++k) { 737271f0bbf9SMatthew G. Knepley valCopy[Ni * (foffset + i) + k] *= fval; 737371f0bbf9SMatthew G. Knepley valCopy[Ni * k + (foffset + i)] *= fval; 73746ecaa68aSToby Isaac } 73756ecaa68aSToby Isaac } 737671f0bbf9SMatthew G. Knepley } 737771f0bbf9SMatthew G. Knepley foffset += fdof; 737871f0bbf9SMatthew G. Knepley } 737971f0bbf9SMatthew G. Knepley } 738071f0bbf9SMatthew G. Knepley } 738171f0bbf9SMatthew G. Knepley /* 4) Apply hanging node constraints. Get new symmetries and replace all storage with constrained storage */ 73829566063dSJacob Faibussowitsch PetscCall(DMPlexAnchorsModifyMat(dm, section, Ncl, Ni, points, perms, values ? *values : NULL, &NclC, &NiC, &pointsC, values ? &valuesC : NULL, offsets, PETSC_TRUE)); 738371f0bbf9SMatthew G. Knepley if (NclC) { 73849566063dSJacob Faibussowitsch if (valCopy) PetscCall(DMRestoreWorkArray(dm, Ni*Ni, MPIU_SCALAR, &valCopy)); 738571f0bbf9SMatthew G. Knepley for (f = 0; f < PetscMax(1, Nf); ++f) { 73869566063dSJacob Faibussowitsch if (Nf) PetscCall(PetscSectionRestoreFieldPointSyms(section, f, Ncl, points, &perms[f], &flips[f])); 73879566063dSJacob Faibussowitsch else PetscCall(PetscSectionRestorePointSyms(section, Ncl, points, &perms[f], &flips[f])); 738871f0bbf9SMatthew G. Knepley } 738971f0bbf9SMatthew G. Knepley for (f = 0; f < PetscMax(1, Nf); ++f) { 73909566063dSJacob Faibussowitsch if (Nf) PetscCall(PetscSectionGetFieldPointSyms(section, f, NclC, pointsC, &perms[f], &flips[f])); 73919566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetPointSyms(section, NclC, pointsC, &perms[f], &flips[f])); 739271f0bbf9SMatthew G. Knepley } 73939566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, section, point, &Ncl, &points, &clSection, &clPoints, &clp)); 739471f0bbf9SMatthew G. Knepley Ncl = NclC; 739571f0bbf9SMatthew G. Knepley Ni = NiC; 739671f0bbf9SMatthew G. Knepley points = pointsC; 739771f0bbf9SMatthew G. Knepley if (values) *values = valuesC; 739871f0bbf9SMatthew G. Knepley } 739971f0bbf9SMatthew G. Knepley /* 5) Calculate indices */ 74009566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Ni, MPIU_INT, &idx)); 740171f0bbf9SMatthew G. Knepley if (Nf) { 740271f0bbf9SMatthew G. Knepley PetscInt idxOff; 740371f0bbf9SMatthew G. Knepley PetscBool useFieldOffsets; 740471f0bbf9SMatthew G. Knepley 740571f0bbf9SMatthew G. Knepley if (outOffsets) {for (f = 0; f <= Nf; f++) outOffsets[f] = offsets[f];} 74069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetUseFieldOffsets(idxSection, &useFieldOffsets)); 740771f0bbf9SMatthew G. Knepley if (useFieldOffsets) { 740871f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl; ++p) { 740971f0bbf9SMatthew G. Knepley const PetscInt pnt = points[p*2]; 741071f0bbf9SMatthew G. Knepley 74119566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFieldsSplit_Internal(section, idxSection, pnt, offsets, perms, p, clperm, idx)); 74127773e69fSMatthew G. Knepley } 74137773e69fSMatthew G. Knepley } else { 741471f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl; ++p) { 741571f0bbf9SMatthew G. Knepley const PetscInt pnt = points[p*2]; 741671f0bbf9SMatthew G. Knepley 74179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(idxSection, pnt, &idxOff)); 741871f0bbf9SMatthew G. Knepley /* Note that we pass a local section even though we're using global offsets. This is because global sections do 741971f0bbf9SMatthew G. Knepley * not (at the time of this writing) have fields set. They probably should, in which case we would pass the 742071f0bbf9SMatthew G. Knepley * global section. */ 74219566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(section, isLocal, pnt, idxOff < 0 ? -(idxOff+1) : idxOff, offsets, PETSC_FALSE, perms, p, clperm, idx)); 742271f0bbf9SMatthew G. Knepley } 742371f0bbf9SMatthew G. Knepley } 742471f0bbf9SMatthew G. Knepley } else { 742571f0bbf9SMatthew G. Knepley PetscInt off = 0, idxOff; 742671f0bbf9SMatthew G. Knepley 742771f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl; ++p) { 742871f0bbf9SMatthew G. Knepley const PetscInt pnt = points[p*2]; 74294acb8e1eSToby Isaac const PetscInt *perm = perms[0] ? perms[0][p] : NULL; 74304acb8e1eSToby Isaac 74319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(idxSection, pnt, &idxOff)); 743271f0bbf9SMatthew G. Knepley /* Note that we pass a local section even though we're using global offsets. This is because global sections do 743371f0bbf9SMatthew G. Knepley * not (at the time of this writing) have fields set. They probably should, in which case we would pass the global section. */ 74349566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(section, isLocal, pnt, idxOff < 0 ? -(idxOff+1) : idxOff, &off, PETSC_FALSE, perm, clperm, idx)); 74357773e69fSMatthew G. Knepley } 74367773e69fSMatthew G. Knepley } 743771f0bbf9SMatthew G. Knepley /* 6) Cleanup */ 743871f0bbf9SMatthew G. Knepley for (f = 0; f < PetscMax(1, Nf); ++f) { 74399566063dSJacob Faibussowitsch if (Nf) PetscCall(PetscSectionRestoreFieldPointSyms(section, f, Ncl, points, &perms[f], &flips[f])); 74409566063dSJacob Faibussowitsch else PetscCall(PetscSectionRestorePointSyms(section, Ncl, points, &perms[f], &flips[f])); 74414acb8e1eSToby Isaac } 744271f0bbf9SMatthew G. Knepley if (NclC) { 74439566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, NclC*2, MPIU_INT, &pointsC)); 74447773e69fSMatthew G. Knepley } else { 74459566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, section, point, &Ncl, &points, &clSection, &clPoints, &clp)); 74467773e69fSMatthew G. Knepley } 744771f0bbf9SMatthew G. Knepley 744871f0bbf9SMatthew G. Knepley if (numIndices) *numIndices = Ni; 744971f0bbf9SMatthew G. Knepley if (indices) *indices = idx; 74507773e69fSMatthew G. Knepley PetscFunctionReturn(0); 74517773e69fSMatthew G. Knepley } 74527773e69fSMatthew G. Knepley 74537cd05799SMatthew G. Knepley /*@C 745471f0bbf9SMatthew G. Knepley DMPlexRestoreClosureIndices - Restores the global dof indices associated with the closure of the given point within the provided sections. 74557cd05799SMatthew G. Knepley 74567cd05799SMatthew G. Knepley Not collective 74577cd05799SMatthew G. Knepley 74587cd05799SMatthew G. Knepley Input Parameters: 74597cd05799SMatthew G. Knepley + dm - The DM 746071f0bbf9SMatthew G. Knepley . section - The PetscSection describing the points (a local section) 746171f0bbf9SMatthew G. Knepley . idxSection - The PetscSection from which to obtain indices (may be local or global) 746271f0bbf9SMatthew G. Knepley . point - The point defining the closure 746371f0bbf9SMatthew G. Knepley - useClPerm - Use the closure point permutation if available 746471f0bbf9SMatthew G. Knepley 746571f0bbf9SMatthew G. Knepley Output Parameters: 746671f0bbf9SMatthew G. Knepley + numIndices - The number of dof indices in the closure of point with the input sections 746771f0bbf9SMatthew G. Knepley . indices - The dof indices 746871f0bbf9SMatthew G. Knepley . outOffsets - Array to write the field offsets into, or NULL 746971f0bbf9SMatthew G. Knepley - values - The input values, which may be modified if sign flips are induced by the point symmetries, or NULL 747071f0bbf9SMatthew G. Knepley 747171f0bbf9SMatthew G. Knepley Notes: 747271f0bbf9SMatthew G. Knepley If values were modified, the user is responsible for calling DMRestoreWorkArray(dm, 0, MPIU_SCALAR, &values). 747371f0bbf9SMatthew G. Knepley 747471f0bbf9SMatthew G. Knepley If idxSection is global, any constrained dofs (see DMAddBoundary(), for example) will get negative indices. The value 747571f0bbf9SMatthew G. Knepley of those indices is not significant. If idxSection is local, the constrained dofs will yield the involution -(idx+1) 747671f0bbf9SMatthew G. Knepley of their index in a local vector. A caller who does not wish to distinguish those points may recover the nonnegative 747771f0bbf9SMatthew G. Knepley indices via involution, -(-(idx+1)+1)==idx. Local indices are provided when idxSection == section, otherwise global 747871f0bbf9SMatthew G. Knepley indices (with the above semantics) are implied. 74797cd05799SMatthew G. Knepley 74807cd05799SMatthew G. Knepley Level: advanced 74817cd05799SMatthew G. Knepley 7482db781477SPatrick Sanan .seealso `DMPlexGetClosureIndices()`, `DMPlexVecGetClosure()`, `DMPlexMatSetClosure()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 74837cd05799SMatthew G. Knepley @*/ 748471f0bbf9SMatthew G. Knepley PetscErrorCode DMPlexRestoreClosureIndices(DM dm, PetscSection section, PetscSection idxSection, PetscInt point, PetscBool useClPerm, 748571f0bbf9SMatthew G. Knepley PetscInt *numIndices, PetscInt *indices[], PetscInt outOffsets[], PetscScalar *values[]) 74867773e69fSMatthew G. Knepley { 74877773e69fSMatthew G. Knepley PetscFunctionBegin; 74887773e69fSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7489064a246eSJacob Faibussowitsch PetscValidPointer(indices, 7); 74909566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_INT, indices)); 74917773e69fSMatthew G. Knepley PetscFunctionReturn(0); 74927773e69fSMatthew G. Knepley } 74937773e69fSMatthew G. Knepley 74947f5d1fdeSMatthew G. Knepley /*@C 74957f5d1fdeSMatthew G. Knepley DMPlexMatSetClosure - Set an array of the values on the closure of 'point' 74967f5d1fdeSMatthew G. Knepley 74977f5d1fdeSMatthew G. Knepley Not collective 74987f5d1fdeSMatthew G. Knepley 74997f5d1fdeSMatthew G. Knepley Input Parameters: 75007f5d1fdeSMatthew G. Knepley + dm - The DM 7501ebd6d717SJed Brown . section - The section describing the layout in v, or NULL to use the default section 7502ebd6d717SJed Brown . globalSection - The section describing the layout in v, or NULL to use the default global section 75037f5d1fdeSMatthew G. Knepley . A - The matrix 7504eaf898f9SPatrick Sanan . point - The point in the DM 75057f5d1fdeSMatthew G. Knepley . values - The array of values 75067f5d1fdeSMatthew G. Knepley - mode - The insert mode, where INSERT_ALL_VALUES and ADD_ALL_VALUES also overwrite boundary conditions 75077f5d1fdeSMatthew G. Knepley 75087f5d1fdeSMatthew G. Knepley Fortran Notes: 75097f5d1fdeSMatthew G. Knepley This routine is only available in Fortran 90, and you must include petsc.h90 in your code. 75107f5d1fdeSMatthew G. Knepley 75117f5d1fdeSMatthew G. Knepley Level: intermediate 75127f5d1fdeSMatthew G. Knepley 7513db781477SPatrick Sanan .seealso `DMPlexMatSetClosureGeneral()`, `DMPlexVecGetClosure()`, `DMPlexVecSetClosure()` 75147f5d1fdeSMatthew G. Knepley @*/ 75157c1f9639SMatthew G Knepley PetscErrorCode DMPlexMatSetClosure(DM dm, PetscSection section, PetscSection globalSection, Mat A, PetscInt point, const PetscScalar values[], InsertMode mode) 7516552f7358SJed Brown { 7517552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 7518552f7358SJed Brown PetscInt *indices; 751971f0bbf9SMatthew G. Knepley PetscInt numIndices; 752071f0bbf9SMatthew G. Knepley const PetscScalar *valuesOrig = values; 7521552f7358SJed Brown PetscErrorCode ierr; 7522552f7358SJed Brown 7523552f7358SJed Brown PetscFunctionBegin; 7524552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 75259566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 75263dc93601SMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 75279566063dSJacob Faibussowitsch if (!globalSection) PetscCall(DMGetGlobalSection(dm, &globalSection)); 75283dc93601SMatthew G. Knepley PetscValidHeaderSpecific(globalSection, PETSC_SECTION_CLASSID, 3); 75293dc93601SMatthew G. Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 4); 7530552f7358SJed Brown 75319566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dm, section, globalSection, point, PETSC_TRUE, &numIndices, &indices, NULL, (PetscScalar **) &values)); 75320d644c17SKarl Rupp 75339566063dSJacob Faibussowitsch if (mesh->printSetValues) PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDOUT_SELF, A, point, numIndices, indices, 0, NULL, values)); 7534d0609cedSBarry Smith /* TODO: fix this code to not use error codes as handle-able exceptions! */ 75354a1e0b3eSMatthew G. Knepley ierr = MatSetValues(A, numIndices, indices, numIndices, indices, values, mode); 7536552f7358SJed Brown if (ierr) { 7537552f7358SJed Brown PetscMPIInt rank; 7538552f7358SJed Brown 75399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 75409566063dSJacob Faibussowitsch PetscCall((*PetscErrorPrintf)("[%d]ERROR in DMPlexMatSetClosure\n", rank)); 75419566063dSJacob Faibussowitsch PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDERR_SELF, A, point, numIndices, indices, 0, NULL, values)); 75429566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dm, section, globalSection, point, PETSC_TRUE, &numIndices, &indices, NULL, (PetscScalar **) &values)); 75439566063dSJacob Faibussowitsch if (values != valuesOrig) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, &values)); 7544c3e24edfSBarry Smith SETERRQ(PetscObjectComm((PetscObject)dm),ierr,"Not possible to set matrix values"); 7545552f7358SJed Brown } 75464a1e0b3eSMatthew G. Knepley if (mesh->printFEM > 1) { 75474a1e0b3eSMatthew G. Knepley PetscInt i; 75489566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " Indices:")); 754963a3b9bcSJacob Faibussowitsch for (i = 0; i < numIndices; ++i) PetscCall(PetscPrintf(PETSC_COMM_SELF, " %" PetscInt_FMT, indices[i])); 75509566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 75514a1e0b3eSMatthew G. Knepley } 755271f0bbf9SMatthew G. Knepley 75539566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dm, section, globalSection, point, PETSC_TRUE, &numIndices, &indices, NULL, (PetscScalar **) &values)); 75549566063dSJacob Faibussowitsch if (values != valuesOrig) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, &values)); 755571f0bbf9SMatthew G. Knepley PetscFunctionReturn(0); 75564acb8e1eSToby Isaac } 755771f0bbf9SMatthew G. Knepley 75584a1e0b3eSMatthew G. Knepley /*@C 75594a1e0b3eSMatthew G. Knepley DMPlexMatSetClosure - Set an array of the values on the closure of 'point' using a different row and column section 75604a1e0b3eSMatthew G. Knepley 75614a1e0b3eSMatthew G. Knepley Not collective 75624a1e0b3eSMatthew G. Knepley 75634a1e0b3eSMatthew G. Knepley Input Parameters: 75644a1e0b3eSMatthew G. Knepley + dmRow - The DM for the row fields 75654a1e0b3eSMatthew G. Knepley . sectionRow - The section describing the layout, or NULL to use the default section in dmRow 75664a1e0b3eSMatthew G. Knepley . globalSectionRow - The section describing the layout, or NULL to use the default global section in dmRow 75674a1e0b3eSMatthew G. Knepley . dmCol - The DM for the column fields 75684a1e0b3eSMatthew G. Knepley . sectionCol - The section describing the layout, or NULL to use the default section in dmCol 75694a1e0b3eSMatthew G. Knepley . globalSectionCol - The section describing the layout, or NULL to use the default global section in dmCol 75704a1e0b3eSMatthew G. Knepley . A - The matrix 75714a1e0b3eSMatthew G. Knepley . point - The point in the DMs 75724a1e0b3eSMatthew G. Knepley . values - The array of values 75734a1e0b3eSMatthew G. Knepley - mode - The insert mode, where INSERT_ALL_VALUES and ADD_ALL_VALUES also overwrite boundary conditions 75744a1e0b3eSMatthew G. Knepley 75754a1e0b3eSMatthew G. Knepley Level: intermediate 75764a1e0b3eSMatthew G. Knepley 7577db781477SPatrick Sanan .seealso `DMPlexMatSetClosure()`, `DMPlexVecGetClosure()`, `DMPlexVecSetClosure()` 75784a1e0b3eSMatthew G. Knepley @*/ 757971f0bbf9SMatthew G. Knepley PetscErrorCode DMPlexMatSetClosureGeneral(DM dmRow, PetscSection sectionRow, PetscSection globalSectionRow, DM dmCol, PetscSection sectionCol, PetscSection globalSectionCol, Mat A, PetscInt point, const PetscScalar values[], InsertMode mode) 758071f0bbf9SMatthew G. Knepley { 758171f0bbf9SMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dmRow->data; 758271f0bbf9SMatthew G. Knepley PetscInt *indicesRow, *indicesCol; 758371f0bbf9SMatthew G. Knepley PetscInt numIndicesRow, numIndicesCol; 758471f0bbf9SMatthew G. Knepley const PetscScalar *valuesOrig = values; 758571f0bbf9SMatthew G. Knepley PetscErrorCode ierr; 758671f0bbf9SMatthew G. Knepley 758771f0bbf9SMatthew G. Knepley PetscFunctionBegin; 758871f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(dmRow, DM_CLASSID, 1); 75899566063dSJacob Faibussowitsch if (!sectionRow) PetscCall(DMGetLocalSection(dmRow, §ionRow)); 759071f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(sectionRow, PETSC_SECTION_CLASSID, 2); 75919566063dSJacob Faibussowitsch if (!globalSectionRow) PetscCall(DMGetGlobalSection(dmRow, &globalSectionRow)); 759271f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(globalSectionRow, PETSC_SECTION_CLASSID, 3); 759371f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(dmCol, DM_CLASSID, 4); 75949566063dSJacob Faibussowitsch if (!sectionCol) PetscCall(DMGetLocalSection(dmCol, §ionCol)); 759571f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(sectionCol, PETSC_SECTION_CLASSID, 5); 75969566063dSJacob Faibussowitsch if (!globalSectionCol) PetscCall(DMGetGlobalSection(dmCol, &globalSectionCol)); 759771f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(globalSectionCol, PETSC_SECTION_CLASSID, 6); 759871f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 7); 759971f0bbf9SMatthew G. Knepley 76009566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmRow, sectionRow, globalSectionRow, point, PETSC_TRUE, &numIndicesRow, &indicesRow, NULL, (PetscScalar **) &values)); 76019566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmCol, sectionCol, globalSectionCol, point, PETSC_TRUE, &numIndicesCol, &indicesCol, NULL, (PetscScalar **) &values)); 760271f0bbf9SMatthew G. Knepley 76039566063dSJacob Faibussowitsch if (mesh->printSetValues) PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDOUT_SELF, A, point, numIndicesRow, indicesRow, numIndicesCol, indicesCol, values)); 7604d0609cedSBarry Smith /* TODO: fix this code to not use error codes as handle-able exceptions! */ 76054a1e0b3eSMatthew G. Knepley ierr = MatSetValues(A, numIndicesRow, indicesRow, numIndicesCol, indicesCol, values, mode); 760671f0bbf9SMatthew G. Knepley if (ierr) { 760771f0bbf9SMatthew G. Knepley PetscMPIInt rank; 760871f0bbf9SMatthew G. Knepley 76099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 76109566063dSJacob Faibussowitsch PetscCall((*PetscErrorPrintf)("[%d]ERROR in DMPlexMatSetClosure\n", rank)); 76119566063dSJacob Faibussowitsch PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDERR_SELF, A, point, numIndicesRow, indicesRow, numIndicesCol, indicesCol, values)); 76129566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmRow, sectionRow, globalSectionRow, point, PETSC_TRUE, &numIndicesRow, &indicesRow, NULL, (PetscScalar **) &values)); 76139566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmCol, sectionCol, globalSectionCol, point, PETSC_TRUE, &numIndicesCol, &indicesRow, NULL, (PetscScalar **) &values)); 76149566063dSJacob Faibussowitsch if (values != valuesOrig) PetscCall(DMRestoreWorkArray(dmRow, 0, MPIU_SCALAR, &values)); 7615d3d1a6afSToby Isaac } 761671f0bbf9SMatthew G. Knepley 76179566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmRow, sectionRow, globalSectionRow, point, PETSC_TRUE, &numIndicesRow, &indicesRow, NULL, (PetscScalar **) &values)); 76189566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmCol, sectionCol, globalSectionCol, point, PETSC_TRUE, &numIndicesCol, &indicesCol, NULL, (PetscScalar **) &values)); 76199566063dSJacob Faibussowitsch if (values != valuesOrig) PetscCall(DMRestoreWorkArray(dmRow, 0, MPIU_SCALAR, &values)); 7620552f7358SJed Brown PetscFunctionReturn(0); 7621552f7358SJed Brown } 7622552f7358SJed Brown 7623de41b84cSMatthew G. Knepley PetscErrorCode DMPlexMatSetClosureRefined(DM dmf, PetscSection fsection, PetscSection globalFSection, DM dmc, PetscSection csection, PetscSection globalCSection, Mat A, PetscInt point, const PetscScalar values[], InsertMode mode) 7624de41b84cSMatthew G. Knepley { 7625de41b84cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dmf->data; 7626de41b84cSMatthew G. Knepley PetscInt *fpoints = NULL, *ftotpoints = NULL; 7627de41b84cSMatthew G. Knepley PetscInt *cpoints = NULL; 7628de41b84cSMatthew G. Knepley PetscInt *findices, *cindices; 762917c0192bSMatthew G. Knepley const PetscInt *fclperm = NULL, *cclperm = NULL; /* Closure permutations cannot work here */ 7630de41b84cSMatthew G. Knepley PetscInt foffsets[32], coffsets[32]; 7631412e9a14SMatthew G. Knepley DMPolytopeType ct; 76324ca5e9f5SMatthew G. Knepley PetscInt numFields, numSubcells, maxFPoints, numFPoints, numCPoints, numFIndices, numCIndices, dof, off, globalOff, pStart, pEnd, p, q, r, s, f; 7633de41b84cSMatthew G. Knepley PetscErrorCode ierr; 7634de41b84cSMatthew G. Knepley 7635de41b84cSMatthew G. Knepley PetscFunctionBegin; 7636de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 1); 7637de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 4); 76389566063dSJacob Faibussowitsch if (!fsection) PetscCall(DMGetLocalSection(dmf, &fsection)); 7639de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(fsection, PETSC_SECTION_CLASSID, 2); 76409566063dSJacob Faibussowitsch if (!csection) PetscCall(DMGetLocalSection(dmc, &csection)); 7641de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(csection, PETSC_SECTION_CLASSID, 5); 76429566063dSJacob Faibussowitsch if (!globalFSection) PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 7643de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(globalFSection, PETSC_SECTION_CLASSID, 3); 76449566063dSJacob Faibussowitsch if (!globalCSection) PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 7645de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(globalCSection, PETSC_SECTION_CLASSID, 6); 7646de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 7); 76479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &numFields)); 764863a3b9bcSJacob Faibussowitsch PetscCheck(numFields <= 31,PetscObjectComm((PetscObject)dmf), PETSC_ERR_ARG_OUTOFRANGE, "Number of fields %" PetscInt_FMT " limited to 31", numFields); 76499566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(foffsets, 32)); 76509566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(coffsets, 32)); 7651de41b84cSMatthew G. Knepley /* Column indices */ 76529566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dmc, point, PETSC_TRUE, &numCPoints, &cpoints)); 76534ca5e9f5SMatthew G. Knepley maxFPoints = numCPoints; 7654de41b84cSMatthew G. Knepley /* Compress out points not in the section */ 7655de41b84cSMatthew G. Knepley /* TODO: Squeeze out points with 0 dof as well */ 76569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(csection, &pStart, &pEnd)); 7657de41b84cSMatthew G. Knepley for (p = 0, q = 0; p < numCPoints*2; p += 2) { 7658de41b84cSMatthew G. Knepley if ((cpoints[p] >= pStart) && (cpoints[p] < pEnd)) { 7659de41b84cSMatthew G. Knepley cpoints[q*2] = cpoints[p]; 7660de41b84cSMatthew G. Knepley cpoints[q*2+1] = cpoints[p+1]; 7661de41b84cSMatthew G. Knepley ++q; 7662de41b84cSMatthew G. Knepley } 7663de41b84cSMatthew G. Knepley } 7664de41b84cSMatthew G. Knepley numCPoints = q; 7665de41b84cSMatthew G. Knepley for (p = 0, numCIndices = 0; p < numCPoints*2; p += 2) { 7666de41b84cSMatthew G. Knepley PetscInt fdof; 7667de41b84cSMatthew G. Knepley 76689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(csection, cpoints[p], &dof)); 76694ca5e9f5SMatthew G. Knepley if (!dof) continue; 7670de41b84cSMatthew G. Knepley for (f = 0; f < numFields; ++f) { 76719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(csection, cpoints[p], f, &fdof)); 7672de41b84cSMatthew G. Knepley coffsets[f+1] += fdof; 7673de41b84cSMatthew G. Knepley } 7674de41b84cSMatthew G. Knepley numCIndices += dof; 7675de41b84cSMatthew G. Knepley } 7676de41b84cSMatthew G. Knepley for (f = 1; f < numFields; ++f) coffsets[f+1] += coffsets[f]; 7677de41b84cSMatthew G. Knepley /* Row indices */ 76789566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dmc, point, &ct)); 7679412e9a14SMatthew G. Knepley { 7680012bc364SMatthew G. Knepley DMPlexTransform tr; 7681012bc364SMatthew G. Knepley DMPolytopeType *rct; 7682012bc364SMatthew G. Knepley PetscInt *rsize, *rcone, *rornt, Nt; 7683012bc364SMatthew G. Knepley 76849566063dSJacob Faibussowitsch PetscCall(DMPlexTransformCreate(PETSC_COMM_SELF, &tr)); 76859566063dSJacob Faibussowitsch PetscCall(DMPlexTransformSetType(tr, DMPLEXREFINEREGULAR)); 76869566063dSJacob Faibussowitsch PetscCall(DMPlexTransformCellTransform(tr, ct, point, NULL, &Nt, &rct, &rsize, &rcone, &rornt)); 7687012bc364SMatthew G. Knepley numSubcells = rsize[Nt-1]; 76889566063dSJacob Faibussowitsch PetscCall(DMPlexTransformDestroy(&tr)); 7689412e9a14SMatthew G. Knepley } 76909566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmf, maxFPoints*2*numSubcells, MPIU_INT, &ftotpoints)); 7691de41b84cSMatthew G. Knepley for (r = 0, q = 0; r < numSubcells; ++r) { 7692de41b84cSMatthew G. Knepley /* TODO Map from coarse to fine cells */ 76939566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dmf, point*numSubcells + r, PETSC_TRUE, &numFPoints, &fpoints)); 7694de41b84cSMatthew G. Knepley /* Compress out points not in the section */ 76959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(fsection, &pStart, &pEnd)); 7696de41b84cSMatthew G. Knepley for (p = 0; p < numFPoints*2; p += 2) { 7697de41b84cSMatthew G. Knepley if ((fpoints[p] >= pStart) && (fpoints[p] < pEnd)) { 76989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(fsection, fpoints[p], &dof)); 76994ca5e9f5SMatthew G. Knepley if (!dof) continue; 77004ca5e9f5SMatthew G. Knepley for (s = 0; s < q; ++s) if (fpoints[p] == ftotpoints[s*2]) break; 77014ca5e9f5SMatthew G. Knepley if (s < q) continue; 7702de41b84cSMatthew G. Knepley ftotpoints[q*2] = fpoints[p]; 7703de41b84cSMatthew G. Knepley ftotpoints[q*2+1] = fpoints[p+1]; 7704de41b84cSMatthew G. Knepley ++q; 7705de41b84cSMatthew G. Knepley } 7706de41b84cSMatthew G. Knepley } 77079566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dmf, point, PETSC_TRUE, &numFPoints, &fpoints)); 7708de41b84cSMatthew G. Knepley } 7709de41b84cSMatthew G. Knepley numFPoints = q; 7710de41b84cSMatthew G. Knepley for (p = 0, numFIndices = 0; p < numFPoints*2; p += 2) { 7711de41b84cSMatthew G. Knepley PetscInt fdof; 7712de41b84cSMatthew G. Knepley 77139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(fsection, ftotpoints[p], &dof)); 77144ca5e9f5SMatthew G. Knepley if (!dof) continue; 7715de41b84cSMatthew G. Knepley for (f = 0; f < numFields; ++f) { 77169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(fsection, ftotpoints[p], f, &fdof)); 7717de41b84cSMatthew G. Knepley foffsets[f+1] += fdof; 7718de41b84cSMatthew G. Knepley } 7719de41b84cSMatthew G. Knepley numFIndices += dof; 7720de41b84cSMatthew G. Knepley } 7721de41b84cSMatthew G. Knepley for (f = 1; f < numFields; ++f) foffsets[f+1] += foffsets[f]; 7722de41b84cSMatthew G. Knepley 77231dca8a05SBarry Smith PetscCheck(!numFields || foffsets[numFields] == numFIndices,PetscObjectComm((PetscObject)dmf), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, foffsets[numFields], numFIndices); 77241dca8a05SBarry Smith PetscCheck(!numFields || coffsets[numFields] == numCIndices,PetscObjectComm((PetscObject)dmc), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, coffsets[numFields], numCIndices); 77259566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmf, numFIndices, MPIU_INT, &findices)); 77269566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmc, numCIndices, MPIU_INT, &cindices)); 7727de41b84cSMatthew G. Knepley if (numFields) { 77284acb8e1eSToby Isaac const PetscInt **permsF[32] = {NULL}; 77294acb8e1eSToby Isaac const PetscInt **permsC[32] = {NULL}; 77304acb8e1eSToby Isaac 77314acb8e1eSToby Isaac for (f = 0; f < numFields; f++) { 77329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(fsection,f,numFPoints,ftotpoints,&permsF[f],NULL)); 77339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(csection,f,numCPoints,cpoints,&permsC[f],NULL)); 7734de41b84cSMatthew G. Knepley } 77354acb8e1eSToby Isaac for (p = 0; p < numFPoints; p++) { 77369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalFSection, ftotpoints[2*p], &globalOff)); 77379566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(fsection, PETSC_FALSE, ftotpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, foffsets, PETSC_FALSE, permsF, p, fclperm, findices)); 77384acb8e1eSToby Isaac } 77394acb8e1eSToby Isaac for (p = 0; p < numCPoints; p++) { 77409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalCSection, cpoints[2*p], &globalOff)); 77419566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(csection, PETSC_FALSE, cpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, coffsets, PETSC_FALSE, permsC, p, cclperm, cindices)); 77424acb8e1eSToby Isaac } 77434acb8e1eSToby Isaac for (f = 0; f < numFields; f++) { 77449566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(fsection,f,numFPoints,ftotpoints,&permsF[f],NULL)); 77459566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(csection,f,numCPoints,cpoints,&permsC[f],NULL)); 7746de41b84cSMatthew G. Knepley } 7747de41b84cSMatthew G. Knepley } else { 77484acb8e1eSToby Isaac const PetscInt **permsF = NULL; 77494acb8e1eSToby Isaac const PetscInt **permsC = NULL; 77504acb8e1eSToby Isaac 77519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(fsection,numFPoints,ftotpoints,&permsF,NULL)); 77529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(csection,numCPoints,cpoints,&permsC,NULL)); 77534acb8e1eSToby Isaac for (p = 0, off = 0; p < numFPoints; p++) { 77544acb8e1eSToby Isaac const PetscInt *perm = permsF ? permsF[p] : NULL; 77554acb8e1eSToby Isaac 77569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalFSection, ftotpoints[2*p], &globalOff)); 77579566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(fsection, PETSC_FALSE, ftotpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, &off, PETSC_FALSE, perm, fclperm, findices)); 7758de41b84cSMatthew G. Knepley } 77594acb8e1eSToby Isaac for (p = 0, off = 0; p < numCPoints; p++) { 77604acb8e1eSToby Isaac const PetscInt *perm = permsC ? permsC[p] : NULL; 77614acb8e1eSToby Isaac 77629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalCSection, cpoints[2*p], &globalOff)); 77639566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(csection, PETSC_FALSE, cpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, &off, PETSC_FALSE, perm, cclperm, cindices)); 7764de41b84cSMatthew G. Knepley } 77659566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(fsection,numFPoints,ftotpoints,&permsF,NULL)); 77669566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(csection,numCPoints,cpoints,&permsC,NULL)); 7767de41b84cSMatthew G. Knepley } 77689566063dSJacob Faibussowitsch if (mesh->printSetValues) PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDOUT_SELF, A, point, numFIndices, findices, numCIndices, cindices, values)); 77694acb8e1eSToby Isaac /* TODO: flips */ 7770d0609cedSBarry Smith /* TODO: fix this code to not use error codes as handle-able exceptions! */ 7771de41b84cSMatthew G. Knepley ierr = MatSetValues(A, numFIndices, findices, numCIndices, cindices, values, mode); 7772de41b84cSMatthew G. Knepley if (ierr) { 7773de41b84cSMatthew G. Knepley PetscMPIInt rank; 7774de41b84cSMatthew G. Knepley 77759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 77769566063dSJacob Faibussowitsch PetscCall((*PetscErrorPrintf)("[%d]ERROR in DMPlexMatSetClosure\n", rank)); 77779566063dSJacob Faibussowitsch PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDERR_SELF, A, point, numFIndices, findices, numCIndices, cindices, values)); 77789566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmf, numFIndices, MPIU_INT, &findices)); 77799566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmc, numCIndices, MPIU_INT, &cindices)); 7780de41b84cSMatthew G. Knepley } 77819566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmf, numCPoints*2*4, MPIU_INT, &ftotpoints)); 77829566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dmc, point, PETSC_TRUE, &numCPoints, &cpoints)); 77839566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmf, numFIndices, MPIU_INT, &findices)); 77849566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmc, numCIndices, MPIU_INT, &cindices)); 7785de41b84cSMatthew G. Knepley PetscFunctionReturn(0); 7786de41b84cSMatthew G. Knepley } 7787de41b84cSMatthew G. Knepley 77887c927364SMatthew G. Knepley PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM dmf, PetscSection fsection, PetscSection globalFSection, DM dmc, PetscSection csection, PetscSection globalCSection, PetscInt point, PetscInt cindices[], PetscInt findices[]) 77897c927364SMatthew G. Knepley { 77907c927364SMatthew G. Knepley PetscInt *fpoints = NULL, *ftotpoints = NULL; 77917c927364SMatthew G. Knepley PetscInt *cpoints = NULL; 77927c927364SMatthew G. Knepley PetscInt foffsets[32], coffsets[32]; 779317c0192bSMatthew G. Knepley const PetscInt *fclperm = NULL, *cclperm = NULL; /* Closure permutations cannot work here */ 7794412e9a14SMatthew G. Knepley DMPolytopeType ct; 77957c927364SMatthew G. Knepley PetscInt numFields, numSubcells, maxFPoints, numFPoints, numCPoints, numFIndices, numCIndices, dof, off, globalOff, pStart, pEnd, p, q, r, s, f; 77967c927364SMatthew G. Knepley 77977c927364SMatthew G. Knepley PetscFunctionBegin; 77987c927364SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 1); 77997c927364SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 4); 78009566063dSJacob Faibussowitsch if (!fsection) PetscCall(DMGetLocalSection(dmf, &fsection)); 78017c927364SMatthew G. Knepley PetscValidHeaderSpecific(fsection, PETSC_SECTION_CLASSID, 2); 78029566063dSJacob Faibussowitsch if (!csection) PetscCall(DMGetLocalSection(dmc, &csection)); 78037c927364SMatthew G. Knepley PetscValidHeaderSpecific(csection, PETSC_SECTION_CLASSID, 5); 78049566063dSJacob Faibussowitsch if (!globalFSection) PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 78057c927364SMatthew G. Knepley PetscValidHeaderSpecific(globalFSection, PETSC_SECTION_CLASSID, 3); 78069566063dSJacob Faibussowitsch if (!globalCSection) PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 78077c927364SMatthew G. Knepley PetscValidHeaderSpecific(globalCSection, PETSC_SECTION_CLASSID, 6); 78089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &numFields)); 780963a3b9bcSJacob Faibussowitsch PetscCheck(numFields <= 31,PetscObjectComm((PetscObject)dmf), PETSC_ERR_ARG_OUTOFRANGE, "Number of fields %" PetscInt_FMT " limited to 31", numFields); 78109566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(foffsets, 32)); 78119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(coffsets, 32)); 78127c927364SMatthew G. Knepley /* Column indices */ 78139566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dmc, point, PETSC_TRUE, &numCPoints, &cpoints)); 78147c927364SMatthew G. Knepley maxFPoints = numCPoints; 78157c927364SMatthew G. Knepley /* Compress out points not in the section */ 78167c927364SMatthew G. Knepley /* TODO: Squeeze out points with 0 dof as well */ 78179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(csection, &pStart, &pEnd)); 78187c927364SMatthew G. Knepley for (p = 0, q = 0; p < numCPoints*2; p += 2) { 78197c927364SMatthew G. Knepley if ((cpoints[p] >= pStart) && (cpoints[p] < pEnd)) { 78207c927364SMatthew G. Knepley cpoints[q*2] = cpoints[p]; 78217c927364SMatthew G. Knepley cpoints[q*2+1] = cpoints[p+1]; 78227c927364SMatthew G. Knepley ++q; 78237c927364SMatthew G. Knepley } 78247c927364SMatthew G. Knepley } 78257c927364SMatthew G. Knepley numCPoints = q; 78267c927364SMatthew G. Knepley for (p = 0, numCIndices = 0; p < numCPoints*2; p += 2) { 78277c927364SMatthew G. Knepley PetscInt fdof; 78287c927364SMatthew G. Knepley 78299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(csection, cpoints[p], &dof)); 78307c927364SMatthew G. Knepley if (!dof) continue; 78317c927364SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 78329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(csection, cpoints[p], f, &fdof)); 78337c927364SMatthew G. Knepley coffsets[f+1] += fdof; 78347c927364SMatthew G. Knepley } 78357c927364SMatthew G. Knepley numCIndices += dof; 78367c927364SMatthew G. Knepley } 78377c927364SMatthew G. Knepley for (f = 1; f < numFields; ++f) coffsets[f+1] += coffsets[f]; 78387c927364SMatthew G. Knepley /* Row indices */ 78399566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dmc, point, &ct)); 7840412e9a14SMatthew G. Knepley { 7841012bc364SMatthew G. Knepley DMPlexTransform tr; 7842012bc364SMatthew G. Knepley DMPolytopeType *rct; 7843012bc364SMatthew G. Knepley PetscInt *rsize, *rcone, *rornt, Nt; 7844012bc364SMatthew G. Knepley 78459566063dSJacob Faibussowitsch PetscCall(DMPlexTransformCreate(PETSC_COMM_SELF, &tr)); 78469566063dSJacob Faibussowitsch PetscCall(DMPlexTransformSetType(tr, DMPLEXREFINEREGULAR)); 78479566063dSJacob Faibussowitsch PetscCall(DMPlexTransformCellTransform(tr, ct, point, NULL, &Nt, &rct, &rsize, &rcone, &rornt)); 7848012bc364SMatthew G. Knepley numSubcells = rsize[Nt-1]; 78499566063dSJacob Faibussowitsch PetscCall(DMPlexTransformDestroy(&tr)); 7850412e9a14SMatthew G. Knepley } 78519566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmf, maxFPoints*2*numSubcells, MPIU_INT, &ftotpoints)); 78527c927364SMatthew G. Knepley for (r = 0, q = 0; r < numSubcells; ++r) { 78537c927364SMatthew G. Knepley /* TODO Map from coarse to fine cells */ 78549566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dmf, point*numSubcells + r, PETSC_TRUE, &numFPoints, &fpoints)); 78557c927364SMatthew G. Knepley /* Compress out points not in the section */ 78569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(fsection, &pStart, &pEnd)); 78577c927364SMatthew G. Knepley for (p = 0; p < numFPoints*2; p += 2) { 78587c927364SMatthew G. Knepley if ((fpoints[p] >= pStart) && (fpoints[p] < pEnd)) { 78599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(fsection, fpoints[p], &dof)); 78607c927364SMatthew G. Knepley if (!dof) continue; 78617c927364SMatthew G. Knepley for (s = 0; s < q; ++s) if (fpoints[p] == ftotpoints[s*2]) break; 78627c927364SMatthew G. Knepley if (s < q) continue; 78637c927364SMatthew G. Knepley ftotpoints[q*2] = fpoints[p]; 78647c927364SMatthew G. Knepley ftotpoints[q*2+1] = fpoints[p+1]; 78657c927364SMatthew G. Knepley ++q; 78667c927364SMatthew G. Knepley } 78677c927364SMatthew G. Knepley } 78689566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dmf, point, PETSC_TRUE, &numFPoints, &fpoints)); 78697c927364SMatthew G. Knepley } 78707c927364SMatthew G. Knepley numFPoints = q; 78717c927364SMatthew G. Knepley for (p = 0, numFIndices = 0; p < numFPoints*2; p += 2) { 78727c927364SMatthew G. Knepley PetscInt fdof; 78737c927364SMatthew G. Knepley 78749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(fsection, ftotpoints[p], &dof)); 78757c927364SMatthew G. Knepley if (!dof) continue; 78767c927364SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 78779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(fsection, ftotpoints[p], f, &fdof)); 78787c927364SMatthew G. Knepley foffsets[f+1] += fdof; 78797c927364SMatthew G. Knepley } 78807c927364SMatthew G. Knepley numFIndices += dof; 78817c927364SMatthew G. Knepley } 78827c927364SMatthew G. Knepley for (f = 1; f < numFields; ++f) foffsets[f+1] += foffsets[f]; 78837c927364SMatthew G. Knepley 78841dca8a05SBarry Smith PetscCheck(!numFields || foffsets[numFields] == numFIndices,PetscObjectComm((PetscObject)dmf), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, foffsets[numFields], numFIndices); 78851dca8a05SBarry Smith PetscCheck(!numFields || coffsets[numFields] == numCIndices,PetscObjectComm((PetscObject)dmc), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, coffsets[numFields], numCIndices); 78867c927364SMatthew G. Knepley if (numFields) { 78874acb8e1eSToby Isaac const PetscInt **permsF[32] = {NULL}; 78884acb8e1eSToby Isaac const PetscInt **permsC[32] = {NULL}; 78894acb8e1eSToby Isaac 78904acb8e1eSToby Isaac for (f = 0; f < numFields; f++) { 78919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(fsection,f,numFPoints,ftotpoints,&permsF[f],NULL)); 78929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(csection,f,numCPoints,cpoints,&permsC[f],NULL)); 78937c927364SMatthew G. Knepley } 78944acb8e1eSToby Isaac for (p = 0; p < numFPoints; p++) { 78959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalFSection, ftotpoints[2*p], &globalOff)); 78969566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(fsection, PETSC_FALSE, ftotpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, foffsets, PETSC_FALSE, permsF, p, fclperm, findices)); 78974acb8e1eSToby Isaac } 78984acb8e1eSToby Isaac for (p = 0; p < numCPoints; p++) { 78999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalCSection, cpoints[2*p], &globalOff)); 79009566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(csection, PETSC_FALSE, cpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, coffsets, PETSC_FALSE, permsC, p, cclperm, cindices)); 79014acb8e1eSToby Isaac } 79024acb8e1eSToby Isaac for (f = 0; f < numFields; f++) { 79039566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(fsection,f,numFPoints,ftotpoints,&permsF[f],NULL)); 79049566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(csection,f,numCPoints,cpoints,&permsC[f],NULL)); 79057c927364SMatthew G. Knepley } 79067c927364SMatthew G. Knepley } else { 79074acb8e1eSToby Isaac const PetscInt **permsF = NULL; 79084acb8e1eSToby Isaac const PetscInt **permsC = NULL; 79094acb8e1eSToby Isaac 79109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(fsection,numFPoints,ftotpoints,&permsF,NULL)); 79119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(csection,numCPoints,cpoints,&permsC,NULL)); 79124acb8e1eSToby Isaac for (p = 0, off = 0; p < numFPoints; p++) { 79134acb8e1eSToby Isaac const PetscInt *perm = permsF ? permsF[p] : NULL; 79144acb8e1eSToby Isaac 79159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalFSection, ftotpoints[2*p], &globalOff)); 79169566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(fsection, PETSC_FALSE, ftotpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, &off, PETSC_FALSE, perm, fclperm, findices)); 79177c927364SMatthew G. Knepley } 79184acb8e1eSToby Isaac for (p = 0, off = 0; p < numCPoints; p++) { 79194acb8e1eSToby Isaac const PetscInt *perm = permsC ? permsC[p] : NULL; 79204acb8e1eSToby Isaac 79219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalCSection, cpoints[2*p], &globalOff)); 79229566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(csection, PETSC_FALSE, cpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, &off, PETSC_FALSE, perm, cclperm, cindices)); 79237c927364SMatthew G. Knepley } 79249566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(fsection,numFPoints,ftotpoints,&permsF,NULL)); 79259566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(csection,numCPoints,cpoints,&permsC,NULL)); 79267c927364SMatthew G. Knepley } 79279566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmf, numCPoints*2*4, MPIU_INT, &ftotpoints)); 79289566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dmc, point, PETSC_TRUE, &numCPoints, &cpoints)); 79297c927364SMatthew G. Knepley PetscFunctionReturn(0); 79307c927364SMatthew G. Knepley } 79317c927364SMatthew G. Knepley 79327cd05799SMatthew G. Knepley /*@C 79337cd05799SMatthew G. Knepley DMPlexGetVTKCellHeight - Returns the height in the DAG used to determine which points are cells (normally 0) 79347cd05799SMatthew G. Knepley 79357cd05799SMatthew G. Knepley Input Parameter: 79367cd05799SMatthew G. Knepley . dm - The DMPlex object 79377cd05799SMatthew G. Knepley 79387cd05799SMatthew G. Knepley Output Parameter: 79397cd05799SMatthew G. Knepley . cellHeight - The height of a cell 79407cd05799SMatthew G. Knepley 79417cd05799SMatthew G. Knepley Level: developer 79427cd05799SMatthew G. Knepley 7943db781477SPatrick Sanan .seealso `DMPlexSetVTKCellHeight()` 79447cd05799SMatthew G. Knepley @*/ 7945552f7358SJed Brown PetscErrorCode DMPlexGetVTKCellHeight(DM dm, PetscInt *cellHeight) 7946552f7358SJed Brown { 7947552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 7948552f7358SJed Brown 7949552f7358SJed Brown PetscFunctionBegin; 7950552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7951dadcf809SJacob Faibussowitsch PetscValidIntPointer(cellHeight, 2); 7952552f7358SJed Brown *cellHeight = mesh->vtkCellHeight; 7953552f7358SJed Brown PetscFunctionReturn(0); 7954552f7358SJed Brown } 7955552f7358SJed Brown 79567cd05799SMatthew G. Knepley /*@C 79577cd05799SMatthew G. Knepley DMPlexSetVTKCellHeight - Sets the height in the DAG used to determine which points are cells (normally 0) 79587cd05799SMatthew G. Knepley 79597cd05799SMatthew G. Knepley Input Parameters: 79607cd05799SMatthew G. Knepley + dm - The DMPlex object 79617cd05799SMatthew G. Knepley - cellHeight - The height of a cell 79627cd05799SMatthew G. Knepley 79637cd05799SMatthew G. Knepley Level: developer 79647cd05799SMatthew G. Knepley 7965db781477SPatrick Sanan .seealso `DMPlexGetVTKCellHeight()` 79667cd05799SMatthew G. Knepley @*/ 7967552f7358SJed Brown PetscErrorCode DMPlexSetVTKCellHeight(DM dm, PetscInt cellHeight) 7968552f7358SJed Brown { 7969552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 7970552f7358SJed Brown 7971552f7358SJed Brown PetscFunctionBegin; 7972552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7973552f7358SJed Brown mesh->vtkCellHeight = cellHeight; 7974552f7358SJed Brown PetscFunctionReturn(0); 7975552f7358SJed Brown } 7976552f7358SJed Brown 7977e6139122SMatthew G. Knepley /*@ 7978e6139122SMatthew G. Knepley DMPlexGetGhostCellStratum - Get the range of cells which are used to enforce FV boundary conditions 7979e6139122SMatthew G. Knepley 7980e6139122SMatthew G. Knepley Input Parameter: 7981e6139122SMatthew G. Knepley . dm - The DMPlex object 7982e6139122SMatthew G. Knepley 7983e6139122SMatthew G. Knepley Output Parameters: 79842a9f31c0SMatthew G. Knepley + gcStart - The first ghost cell, or NULL 79852a9f31c0SMatthew G. Knepley - gcEnd - The upper bound on ghost cells, or NULL 7986e6139122SMatthew G. Knepley 79872a9f31c0SMatthew G. Knepley Level: advanced 7988e6139122SMatthew G. Knepley 7989db781477SPatrick Sanan .seealso `DMPlexConstructGhostCells()`, `DMPlexGetGhostCellStratum()` 7990e6139122SMatthew G. Knepley @*/ 7991e6139122SMatthew G. Knepley PetscErrorCode DMPlexGetGhostCellStratum(DM dm, PetscInt *gcStart, PetscInt *gcEnd) 7992e6139122SMatthew G. Knepley { 7993412e9a14SMatthew G. Knepley DMLabel ctLabel; 7994e6139122SMatthew G. Knepley 7995e6139122SMatthew G. Knepley PetscFunctionBegin; 7996e6139122SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79979566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 79989566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_FV_GHOST, gcStart, gcEnd)); 7999e6139122SMatthew G. Knepley PetscFunctionReturn(0); 8000e6139122SMatthew G. Knepley } 8001e6139122SMatthew G. Knepley 80029886b8cfSStefano Zampini PetscErrorCode DMPlexCreateNumbering_Plex(DM dm, PetscInt pStart, PetscInt pEnd, PetscInt shift, PetscInt *globalSize, PetscSF sf, IS *numbering) 8003552f7358SJed Brown { 8004552f7358SJed Brown PetscSection section, globalSection; 8005552f7358SJed Brown PetscInt *numbers, p; 8006552f7358SJed Brown 8007552f7358SJed Brown PetscFunctionBegin; 80086c1ef331SVaclav Hapla if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, sf)); 80099566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), §ion)); 80109566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(section, pStart, pEnd)); 8011552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 80129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(section, p, 1)); 8013552f7358SJed Brown } 80149566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(section)); 80159566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(section, sf, PETSC_FALSE, PETSC_FALSE, &globalSection)); 80169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd - pStart, &numbers)); 8017552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 80189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &numbers[p-pStart])); 8019ef48cebcSMatthew G. Knepley if (numbers[p-pStart] < 0) numbers[p-pStart] -= shift; 8020ef48cebcSMatthew G. Knepley else numbers[p-pStart] += shift; 8021552f7358SJed Brown } 80229566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject) dm), pEnd - pStart, numbers, PETSC_OWN_POINTER, numbering)); 8023ef48cebcSMatthew G. Knepley if (globalSize) { 8024ef48cebcSMatthew G. Knepley PetscLayout layout; 80259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointLayout(PetscObjectComm((PetscObject) dm), globalSection, &layout)); 80269566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(layout, globalSize)); 80279566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 8028ef48cebcSMatthew G. Knepley } 80299566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ion)); 80309566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&globalSection)); 8031552f7358SJed Brown PetscFunctionReturn(0); 8032552f7358SJed Brown } 8033552f7358SJed Brown 803481ed3555SMatthew G. Knepley PetscErrorCode DMPlexCreateCellNumbering_Internal(DM dm, PetscBool includeHybrid, IS *globalCellNumbers) 8035552f7358SJed Brown { 8036412e9a14SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd; 8037552f7358SJed Brown 8038552f7358SJed Brown PetscFunctionBegin; 80399566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 80409566063dSJacob Faibussowitsch if (includeHybrid) PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 80419566063dSJacob Faibussowitsch else PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 80429566063dSJacob Faibussowitsch PetscCall(DMPlexCreateNumbering_Plex(dm, cStart, cEnd, 0, NULL, dm->sf, globalCellNumbers)); 804381ed3555SMatthew G. Knepley PetscFunctionReturn(0); 8044552f7358SJed Brown } 804581ed3555SMatthew G. Knepley 80468dab3259SMatthew G. Knepley /*@ 80477cd05799SMatthew G. Knepley DMPlexGetCellNumbering - Get a global cell numbering for all cells on this process 80487cd05799SMatthew G. Knepley 80497cd05799SMatthew G. Knepley Input Parameter: 80507cd05799SMatthew G. Knepley . dm - The DMPlex object 80517cd05799SMatthew G. Knepley 80527cd05799SMatthew G. Knepley Output Parameter: 80537cd05799SMatthew G. Knepley . globalCellNumbers - Global cell numbers for all cells on this process 80547cd05799SMatthew G. Knepley 80557cd05799SMatthew G. Knepley Level: developer 80567cd05799SMatthew G. Knepley 8057db781477SPatrick Sanan .seealso `DMPlexGetVertexNumbering()` 80587cd05799SMatthew G. Knepley @*/ 805981ed3555SMatthew G. Knepley PetscErrorCode DMPlexGetCellNumbering(DM dm, IS *globalCellNumbers) 806081ed3555SMatthew G. Knepley { 806181ed3555SMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 806281ed3555SMatthew G. Knepley 806381ed3555SMatthew G. Knepley PetscFunctionBegin; 806481ed3555SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80659566063dSJacob Faibussowitsch if (!mesh->globalCellNumbers) PetscCall(DMPlexCreateCellNumbering_Internal(dm, PETSC_FALSE, &mesh->globalCellNumbers)); 8066552f7358SJed Brown *globalCellNumbers = mesh->globalCellNumbers; 8067552f7358SJed Brown PetscFunctionReturn(0); 8068552f7358SJed Brown } 8069552f7358SJed Brown 807081ed3555SMatthew G. Knepley PetscErrorCode DMPlexCreateVertexNumbering_Internal(DM dm, PetscBool includeHybrid, IS *globalVertexNumbers) 807181ed3555SMatthew G. Knepley { 8072412e9a14SMatthew G. Knepley PetscInt vStart, vEnd; 807381ed3555SMatthew G. Knepley 807481ed3555SMatthew G. Knepley PetscFunctionBegin; 807581ed3555SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80769566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 80779566063dSJacob Faibussowitsch PetscCall(DMPlexCreateNumbering_Plex(dm, vStart, vEnd, 0, NULL, dm->sf, globalVertexNumbers)); 807881ed3555SMatthew G. Knepley PetscFunctionReturn(0); 807981ed3555SMatthew G. Knepley } 808081ed3555SMatthew G. Knepley 80818dab3259SMatthew G. Knepley /*@ 80826aa51ba9SJacob Faibussowitsch DMPlexGetVertexNumbering - Get a global vertex numbering for all vertices on this process 80837cd05799SMatthew G. Knepley 80847cd05799SMatthew G. Knepley Input Parameter: 80857cd05799SMatthew G. Knepley . dm - The DMPlex object 80867cd05799SMatthew G. Knepley 80877cd05799SMatthew G. Knepley Output Parameter: 80887cd05799SMatthew G. Knepley . globalVertexNumbers - Global vertex numbers for all vertices on this process 80897cd05799SMatthew G. Knepley 80907cd05799SMatthew G. Knepley Level: developer 80917cd05799SMatthew G. Knepley 8092db781477SPatrick Sanan .seealso `DMPlexGetCellNumbering()` 80937cd05799SMatthew G. Knepley @*/ 8094552f7358SJed Brown PetscErrorCode DMPlexGetVertexNumbering(DM dm, IS *globalVertexNumbers) 8095552f7358SJed Brown { 8096552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 8097552f7358SJed Brown 8098552f7358SJed Brown PetscFunctionBegin; 8099552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81009566063dSJacob Faibussowitsch if (!mesh->globalVertexNumbers) PetscCall(DMPlexCreateVertexNumbering_Internal(dm, PETSC_FALSE, &mesh->globalVertexNumbers)); 8101552f7358SJed Brown *globalVertexNumbers = mesh->globalVertexNumbers; 8102552f7358SJed Brown PetscFunctionReturn(0); 8103552f7358SJed Brown } 8104552f7358SJed Brown 81058dab3259SMatthew G. Knepley /*@ 81067cd05799SMatthew G. Knepley DMPlexCreatePointNumbering - Create a global numbering for all points on this process 81077cd05799SMatthew G. Knepley 81087cd05799SMatthew G. Knepley Input Parameter: 81097cd05799SMatthew G. Knepley . dm - The DMPlex object 81107cd05799SMatthew G. Knepley 81117cd05799SMatthew G. Knepley Output Parameter: 81127cd05799SMatthew G. Knepley . globalPointNumbers - Global numbers for all points on this process 81137cd05799SMatthew G. Knepley 81147cd05799SMatthew G. Knepley Level: developer 81157cd05799SMatthew G. Knepley 8116db781477SPatrick Sanan .seealso `DMPlexGetCellNumbering()` 81177cd05799SMatthew G. Knepley @*/ 8118ef48cebcSMatthew G. Knepley PetscErrorCode DMPlexCreatePointNumbering(DM dm, IS *globalPointNumbers) 8119ef48cebcSMatthew G. Knepley { 8120ef48cebcSMatthew G. Knepley IS nums[4]; 8121862913ffSStefano Zampini PetscInt depths[4], gdepths[4], starts[4]; 8122ef48cebcSMatthew G. Knepley PetscInt depth, d, shift = 0; 8123ef48cebcSMatthew G. Knepley 8124ef48cebcSMatthew G. Knepley PetscFunctionBegin; 8125ef48cebcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81269566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 81278abc87a0SMichael Lange /* For unstratified meshes use dim instead of depth */ 81289566063dSJacob Faibussowitsch if (depth < 0) PetscCall(DMGetDimension(dm, &depth)); 8129862913ffSStefano Zampini for (d = 0; d <= depth; ++d) { 8130862913ffSStefano Zampini PetscInt end; 8131862913ffSStefano Zampini 8132862913ffSStefano Zampini depths[d] = depth-d; 81339566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, depths[d], &starts[d], &end)); 8134862913ffSStefano Zampini if (!(starts[d]-end)) { starts[d] = depths[d] = -1; } 8135862913ffSStefano Zampini } 81369566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(depth+1, starts, depths)); 81371c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(depths, gdepths, depth+1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject) dm))); 8138862913ffSStefano Zampini for (d = 0; d <= depth; ++d) { 81391dca8a05SBarry Smith PetscCheck(starts[d] < 0 || depths[d] == gdepths[d],PETSC_COMM_SELF,PETSC_ERR_PLIB,"Expected depth %" PetscInt_FMT ", found %" PetscInt_FMT,depths[d],gdepths[d]); 8140862913ffSStefano Zampini } 8141ef48cebcSMatthew G. Knepley for (d = 0; d <= depth; ++d) { 8142ef48cebcSMatthew G. Knepley PetscInt pStart, pEnd, gsize; 8143ef48cebcSMatthew G. Knepley 81449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, gdepths[d], &pStart, &pEnd)); 81459566063dSJacob Faibussowitsch PetscCall(DMPlexCreateNumbering_Plex(dm, pStart, pEnd, shift, &gsize, dm->sf, &nums[d])); 8146ef48cebcSMatthew G. Knepley shift += gsize; 8147ef48cebcSMatthew G. Knepley } 81489566063dSJacob Faibussowitsch PetscCall(ISConcatenate(PetscObjectComm((PetscObject) dm), depth+1, nums, globalPointNumbers)); 81499566063dSJacob Faibussowitsch for (d = 0; d <= depth; ++d) PetscCall(ISDestroy(&nums[d])); 8150ef48cebcSMatthew G. Knepley PetscFunctionReturn(0); 8151ef48cebcSMatthew G. Knepley } 8152ef48cebcSMatthew G. Knepley 815308a22f4bSMatthew G. Knepley /*@ 815408a22f4bSMatthew G. Knepley DMPlexCreateRankField - Create a cell field whose value is the rank of the owner 815508a22f4bSMatthew G. Knepley 815608a22f4bSMatthew G. Knepley Input Parameter: 815708a22f4bSMatthew G. Knepley . dm - The DMPlex object 815808a22f4bSMatthew G. Knepley 815908a22f4bSMatthew G. Knepley Output Parameter: 816008a22f4bSMatthew G. Knepley . ranks - The rank field 816108a22f4bSMatthew G. Knepley 816208a22f4bSMatthew G. Knepley Options Database Keys: 816308a22f4bSMatthew G. Knepley . -dm_partition_view - Adds the rank field into the DM output from -dm_view using the same viewer 816408a22f4bSMatthew G. Knepley 816508a22f4bSMatthew G. Knepley Level: intermediate 816608a22f4bSMatthew G. Knepley 8167db781477SPatrick Sanan .seealso: `DMView()` 816808a22f4bSMatthew G. Knepley @*/ 816908a22f4bSMatthew G. Knepley PetscErrorCode DMPlexCreateRankField(DM dm, Vec *ranks) 817008a22f4bSMatthew G. Knepley { 817108a22f4bSMatthew G. Knepley DM rdm; 817208a22f4bSMatthew G. Knepley PetscFE fe; 817308a22f4bSMatthew G. Knepley PetscScalar *r; 817408a22f4bSMatthew G. Knepley PetscMPIInt rank; 8175a55f9a55SMatthew G. Knepley DMPolytopeType ct; 817608a22f4bSMatthew G. Knepley PetscInt dim, cStart, cEnd, c; 8177a55f9a55SMatthew G. Knepley PetscBool simplex; 817808a22f4bSMatthew G. Knepley 817908a22f4bSMatthew G. Knepley PetscFunctionBeginUser; 8180f95ace6aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8181f95ace6aSMatthew G. Knepley PetscValidPointer(ranks, 2); 81829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 81839566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &rdm)); 81849566063dSJacob Faibussowitsch PetscCall(DMGetDimension(rdm, &dim)); 81859566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(rdm, 0, &cStart, &cEnd)); 81869566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 8187a55f9a55SMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct)+1 ? PETSC_TRUE : PETSC_FALSE; 81889566063dSJacob Faibussowitsch PetscCall(PetscFECreateDefault(PETSC_COMM_SELF, dim, 1, simplex, "PETSc___rank_", -1, &fe)); 81899566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) fe, "rank")); 81909566063dSJacob Faibussowitsch PetscCall(DMSetField(rdm, 0, NULL, (PetscObject) fe)); 81919566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&fe)); 81929566063dSJacob Faibussowitsch PetscCall(DMCreateDS(rdm)); 81939566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(rdm, ranks)); 81949566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *ranks, "partition")); 81959566063dSJacob Faibussowitsch PetscCall(VecGetArray(*ranks, &r)); 819608a22f4bSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 819708a22f4bSMatthew G. Knepley PetscScalar *lr; 819808a22f4bSMatthew G. Knepley 81999566063dSJacob Faibussowitsch PetscCall(DMPlexPointGlobalRef(rdm, c, r, &lr)); 820071f09efeSPierre Jolivet if (lr) *lr = rank; 820108a22f4bSMatthew G. Knepley } 82029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*ranks, &r)); 82039566063dSJacob Faibussowitsch PetscCall(DMDestroy(&rdm)); 820408a22f4bSMatthew G. Knepley PetscFunctionReturn(0); 820508a22f4bSMatthew G. Knepley } 820608a22f4bSMatthew G. Knepley 8207ca8062c8SMatthew G. Knepley /*@ 820818e14f0cSMatthew G. Knepley DMPlexCreateLabelField - Create a cell field whose value is the label value for that cell 820918e14f0cSMatthew G. Knepley 821018e14f0cSMatthew G. Knepley Input Parameters: 821118e14f0cSMatthew G. Knepley + dm - The DMPlex 821218e14f0cSMatthew G. Knepley - label - The DMLabel 821318e14f0cSMatthew G. Knepley 821418e14f0cSMatthew G. Knepley Output Parameter: 821518e14f0cSMatthew G. Knepley . val - The label value field 821618e14f0cSMatthew G. Knepley 821718e14f0cSMatthew G. Knepley Options Database Keys: 821818e14f0cSMatthew G. Knepley . -dm_label_view - Adds the label value field into the DM output from -dm_view using the same viewer 821918e14f0cSMatthew G. Knepley 822018e14f0cSMatthew G. Knepley Level: intermediate 822118e14f0cSMatthew G. Knepley 8222db781477SPatrick Sanan .seealso: `DMView()` 822318e14f0cSMatthew G. Knepley @*/ 822418e14f0cSMatthew G. Knepley PetscErrorCode DMPlexCreateLabelField(DM dm, DMLabel label, Vec *val) 822518e14f0cSMatthew G. Knepley { 822618e14f0cSMatthew G. Knepley DM rdm; 822718e14f0cSMatthew G. Knepley PetscFE fe; 822818e14f0cSMatthew G. Knepley PetscScalar *v; 822918e14f0cSMatthew G. Knepley PetscInt dim, cStart, cEnd, c; 823018e14f0cSMatthew G. Knepley 823118e14f0cSMatthew G. Knepley PetscFunctionBeginUser; 823218e14f0cSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 823318e14f0cSMatthew G. Knepley PetscValidPointer(label, 2); 823418e14f0cSMatthew G. Knepley PetscValidPointer(val, 3); 82359566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &rdm)); 82369566063dSJacob Faibussowitsch PetscCall(DMGetDimension(rdm, &dim)); 82379566063dSJacob Faibussowitsch PetscCall(PetscFECreateDefault(PetscObjectComm((PetscObject) rdm), dim, 1, PETSC_TRUE, "PETSc___label_value_", -1, &fe)); 82389566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) fe, "label_value")); 82399566063dSJacob Faibussowitsch PetscCall(DMSetField(rdm, 0, NULL, (PetscObject) fe)); 82409566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&fe)); 82419566063dSJacob Faibussowitsch PetscCall(DMCreateDS(rdm)); 82429566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(rdm, 0, &cStart, &cEnd)); 82439566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(rdm, val)); 82449566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *val, "label_value")); 82459566063dSJacob Faibussowitsch PetscCall(VecGetArray(*val, &v)); 824618e14f0cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 824718e14f0cSMatthew G. Knepley PetscScalar *lv; 824818e14f0cSMatthew G. Knepley PetscInt cval; 824918e14f0cSMatthew G. Knepley 82509566063dSJacob Faibussowitsch PetscCall(DMPlexPointGlobalRef(rdm, c, v, &lv)); 82519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &cval)); 825218e14f0cSMatthew G. Knepley *lv = cval; 825318e14f0cSMatthew G. Knepley } 82549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*val, &v)); 82559566063dSJacob Faibussowitsch PetscCall(DMDestroy(&rdm)); 825618e14f0cSMatthew G. Knepley PetscFunctionReturn(0); 825718e14f0cSMatthew G. Knepley } 825818e14f0cSMatthew G. Knepley 825918e14f0cSMatthew G. Knepley /*@ 8260ca8062c8SMatthew G. Knepley DMPlexCheckSymmetry - Check that the adjacency information in the mesh is symmetric. 8261ca8062c8SMatthew G. Knepley 826269916449SMatthew G. Knepley Input Parameter: 826369916449SMatthew G. Knepley . dm - The DMPlex object 8264ca8062c8SMatthew G. Knepley 826595eb5ee5SVaclav Hapla Notes: 826695eb5ee5SVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 826795eb5ee5SVaclav Hapla 826895eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 8269ca8062c8SMatthew G. Knepley 8270ca8062c8SMatthew G. Knepley Level: developer 8271ca8062c8SMatthew G. Knepley 8272db781477SPatrick Sanan .seealso: `DMCreate()`, `DMSetFromOptions()` 8273ca8062c8SMatthew G. Knepley @*/ 8274ca8062c8SMatthew G. Knepley PetscErrorCode DMPlexCheckSymmetry(DM dm) 8275ca8062c8SMatthew G. Knepley { 8276ca8062c8SMatthew G. Knepley PetscSection coneSection, supportSection; 8277ca8062c8SMatthew G. Knepley const PetscInt *cone, *support; 8278ca8062c8SMatthew G. Knepley PetscInt coneSize, c, supportSize, s; 827957beb4faSStefano Zampini PetscInt pStart, pEnd, p, pp, csize, ssize; 828057beb4faSStefano Zampini PetscBool storagecheck = PETSC_TRUE; 8281ca8062c8SMatthew G. Knepley 8282ca8062c8SMatthew G. Knepley PetscFunctionBegin; 8283ca8062c8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 82849566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dm, NULL, "-sym_dm_view")); 82859566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &coneSection)); 82869566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSection(dm, &supportSection)); 8287ca8062c8SMatthew G. Knepley /* Check that point p is found in the support of its cone points, and vice versa */ 82889566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8289ca8062c8SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 82909566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 82919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 8292ca8062c8SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 829342e66dfaSMatthew G. Knepley PetscBool dup = PETSC_FALSE; 829442e66dfaSMatthew G. Knepley PetscInt d; 829542e66dfaSMatthew G. Knepley for (d = c-1; d >= 0; --d) { 829642e66dfaSMatthew G. Knepley if (cone[c] == cone[d]) {dup = PETSC_TRUE; break;} 829742e66dfaSMatthew G. Knepley } 82989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &supportSize)); 82999566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 8300ca8062c8SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 8301ca8062c8SMatthew G. Knepley if (support[s] == p) break; 8302ca8062c8SMatthew G. Knepley } 830342e66dfaSMatthew G. Knepley if ((s >= supportSize) || (dup && (support[s+1] != p))) { 830463a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "p: %" PetscInt_FMT " cone: ", p)); 8305ca8062c8SMatthew G. Knepley for (s = 0; s < coneSize; ++s) { 830663a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT ", ", cone[s])); 8307ca8062c8SMatthew G. Knepley } 83089566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 830963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "p: %" PetscInt_FMT " support: ", cone[c])); 8310ca8062c8SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 831163a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT ", ", support[s])); 8312ca8062c8SMatthew G. Knepley } 83139566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 831463a3b9bcSJacob Faibussowitsch PetscCheck(!dup,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " not repeatedly found in support of repeated cone point %" PetscInt_FMT, p, cone[c]); 831563a3b9bcSJacob Faibussowitsch else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " not found in support of cone point %" PetscInt_FMT, p, cone[c]); 8316ca8062c8SMatthew G. Knepley } 831742e66dfaSMatthew G. Knepley } 83189566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(dm, p, &pp, NULL)); 831957beb4faSStefano Zampini if (p != pp) { storagecheck = PETSC_FALSE; continue; } 83209566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 83219566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 8322ca8062c8SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 83239566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 83249566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 8325ca8062c8SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 83269566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(dm, cone[c], &pp, NULL)); 832757beb4faSStefano Zampini if (cone[c] != pp) { c = 0; break; } 8328ca8062c8SMatthew G. Knepley if (cone[c] == p) break; 8329ca8062c8SMatthew G. Knepley } 8330ca8062c8SMatthew G. Knepley if (c >= coneSize) { 833163a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "p: %" PetscInt_FMT " support: ", p)); 8332ca8062c8SMatthew G. Knepley for (c = 0; c < supportSize; ++c) { 833363a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT ", ", support[c])); 8334ca8062c8SMatthew G. Knepley } 83359566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 833663a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "p: %" PetscInt_FMT " cone: ", support[s])); 8337ca8062c8SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 833863a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT ", ", cone[c])); 8339ca8062c8SMatthew G. Knepley } 83409566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 834163a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " not found in cone of support point %" PetscInt_FMT, p, support[s]); 8342ca8062c8SMatthew G. Knepley } 8343ca8062c8SMatthew G. Knepley } 8344ca8062c8SMatthew G. Knepley } 834557beb4faSStefano Zampini if (storagecheck) { 83469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(coneSection, &csize)); 83479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(supportSection, &ssize)); 834863a3b9bcSJacob Faibussowitsch PetscCheck(csize == ssize,PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Total cone size %" PetscInt_FMT " != Total support size %" PetscInt_FMT, csize, ssize); 834957beb4faSStefano Zampini } 8350ca8062c8SMatthew G. Knepley PetscFunctionReturn(0); 8351ca8062c8SMatthew G. Knepley } 8352ca8062c8SMatthew G. Knepley 8353412e9a14SMatthew G. Knepley /* 8354412e9a14SMatthew G. Knepley For submeshes with cohesive cells (see DMPlexConstructCohesiveCells()), we allow a special case where some of the boundary of a face (edges and vertices) are not duplicated. We call these special boundary points "unsplit", since the same edge or vertex appears in both copies of the face. These unsplit points throw off our counting, so we have to explicitly account for them here. 8355412e9a14SMatthew G. Knepley */ 8356412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellUnsplitVertices_Private(DM dm, PetscInt c, DMPolytopeType ct, PetscInt *unsplit) 8357412e9a14SMatthew G. Knepley { 8358412e9a14SMatthew G. Knepley DMPolytopeType cct; 8359412e9a14SMatthew G. Knepley PetscInt ptpoints[4]; 8360412e9a14SMatthew G. Knepley const PetscInt *cone, *ccone, *ptcone; 8361412e9a14SMatthew G. Knepley PetscInt coneSize, cp, cconeSize, ccp, npt = 0, pt; 8362412e9a14SMatthew G. Knepley 8363412e9a14SMatthew G. Knepley PetscFunctionBegin; 8364412e9a14SMatthew G. Knepley *unsplit = 0; 8365412e9a14SMatthew G. Knepley switch (ct) { 8366b5a892a1SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 8367b5a892a1SMatthew G. Knepley ptpoints[npt++] = c; 8368b5a892a1SMatthew G. Knepley break; 8369412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 83709566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 83719566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 8372412e9a14SMatthew G. Knepley for (cp = 0; cp < coneSize; ++cp) { 83739566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[cp], &cct)); 8374412e9a14SMatthew G. Knepley if (cct == DM_POLYTOPE_POINT_PRISM_TENSOR) ptpoints[npt++] = cone[cp]; 8375412e9a14SMatthew G. Knepley } 8376412e9a14SMatthew G. Knepley break; 8377412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 8378412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 83799566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 83809566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 8381412e9a14SMatthew G. Knepley for (cp = 0; cp < coneSize; ++cp) { 83829566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[cp], &ccone)); 83839566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[cp], &cconeSize)); 8384412e9a14SMatthew G. Knepley for (ccp = 0; ccp < cconeSize; ++ccp) { 83859566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, ccone[ccp], &cct)); 8386412e9a14SMatthew G. Knepley if (cct == DM_POLYTOPE_POINT_PRISM_TENSOR) { 8387412e9a14SMatthew G. Knepley PetscInt p; 8388412e9a14SMatthew G. Knepley for (p = 0; p < npt; ++p) if (ptpoints[p] == ccone[ccp]) break; 8389412e9a14SMatthew G. Knepley if (p == npt) ptpoints[npt++] = ccone[ccp]; 8390412e9a14SMatthew G. Knepley } 8391412e9a14SMatthew G. Knepley } 8392412e9a14SMatthew G. Knepley } 8393412e9a14SMatthew G. Knepley break; 8394412e9a14SMatthew G. Knepley default: break; 8395412e9a14SMatthew G. Knepley } 8396412e9a14SMatthew G. Knepley for (pt = 0; pt < npt; ++pt) { 83979566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ptpoints[pt], &ptcone)); 8398412e9a14SMatthew G. Knepley if (ptcone[0] == ptcone[1]) ++(*unsplit); 8399412e9a14SMatthew G. Knepley } 8400412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 8401412e9a14SMatthew G. Knepley } 8402412e9a14SMatthew G. Knepley 8403ca8062c8SMatthew G. Knepley /*@ 8404ca8062c8SMatthew G. Knepley DMPlexCheckSkeleton - Check that each cell has the correct number of vertices 8405ca8062c8SMatthew G. Knepley 8406ca8062c8SMatthew G. Knepley Input Parameters: 8407ca8062c8SMatthew G. Knepley + dm - The DMPlex object 840858723a97SMatthew G. Knepley - cellHeight - Normally 0 8409ca8062c8SMatthew G. Knepley 841095eb5ee5SVaclav Hapla Notes: 841195eb5ee5SVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 841225c50c26SVaclav Hapla Currently applicable only to homogeneous simplex or tensor meshes. 8413ca8062c8SMatthew G. Knepley 841495eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 841595eb5ee5SVaclav Hapla 8416ca8062c8SMatthew G. Knepley Level: developer 8417ca8062c8SMatthew G. Knepley 8418db781477SPatrick Sanan .seealso: `DMCreate()`, `DMSetFromOptions()` 8419ca8062c8SMatthew G. Knepley @*/ 842025c50c26SVaclav Hapla PetscErrorCode DMPlexCheckSkeleton(DM dm, PetscInt cellHeight) 8421ca8062c8SMatthew G. Knepley { 8422412e9a14SMatthew G. Knepley DMPlexInterpolatedFlag interp; 8423412e9a14SMatthew G. Knepley DMPolytopeType ct; 8424412e9a14SMatthew G. Knepley PetscInt vStart, vEnd, cStart, cEnd, c; 8425ca8062c8SMatthew G. Knepley 8426ca8062c8SMatthew G. Knepley PetscFunctionBegin; 8427ca8062c8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 84289566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interp)); 84299566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 84309566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 8431412e9a14SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 8432412e9a14SMatthew G. Knepley PetscInt *closure = NULL; 8433412e9a14SMatthew G. Knepley PetscInt coneSize, closureSize, cl, Nv = 0; 843458723a97SMatthew G. Knepley 84359566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &ct)); 843663a3b9bcSJacob Faibussowitsch PetscCheck((PetscInt) ct >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " has no cell type", c); 8437412e9a14SMatthew G. Knepley if (ct == DM_POLYTOPE_UNKNOWN) continue; 8438412e9a14SMatthew G. Knepley if (interp == DMPLEX_INTERPOLATED_FULL) { 84399566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 844063a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == DMPolytopeTypeGetConeSize(ct),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " of type %s has cone size %" PetscInt_FMT " != %" PetscInt_FMT, c, DMPolytopeTypes[ct], coneSize, DMPolytopeTypeGetConeSize(ct)); 8441412e9a14SMatthew G. Knepley } 84429566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 844358723a97SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 844458723a97SMatthew G. Knepley const PetscInt p = closure[cl]; 8445412e9a14SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) ++Nv; 844658723a97SMatthew G. Knepley } 84479566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 8448412e9a14SMatthew G. Knepley /* Special Case: Tensor faces with identified vertices */ 8449412e9a14SMatthew G. Knepley if (Nv < DMPolytopeTypeGetNumVertices(ct)) { 8450412e9a14SMatthew G. Knepley PetscInt unsplit; 845142363296SMatthew G. Knepley 84529566063dSJacob Faibussowitsch PetscCall(DMPlexCellUnsplitVertices_Private(dm, c, ct, &unsplit)); 8453412e9a14SMatthew G. Knepley if (Nv + unsplit == DMPolytopeTypeGetNumVertices(ct)) continue; 845442363296SMatthew G. Knepley } 845563a3b9bcSJacob Faibussowitsch PetscCheck(Nv == DMPolytopeTypeGetNumVertices(ct),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " of type %s has %" PetscInt_FMT " vertices != %" PetscInt_FMT, c, DMPolytopeTypes[ct], Nv, DMPolytopeTypeGetNumVertices(ct)); 845642363296SMatthew G. Knepley } 8457ca8062c8SMatthew G. Knepley PetscFunctionReturn(0); 8458ca8062c8SMatthew G. Knepley } 84599bf0dad6SMatthew G. Knepley 84609bf0dad6SMatthew G. Knepley /*@ 84619bf0dad6SMatthew G. Knepley DMPlexCheckFaces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type 84629bf0dad6SMatthew G. Knepley 84638f6815adSVaclav Hapla Collective 8464899ea2b8SJacob Faibussowitsch 84659bf0dad6SMatthew G. Knepley Input Parameters: 84669bf0dad6SMatthew G. Knepley + dm - The DMPlex object 84679bf0dad6SMatthew G. Knepley - cellHeight - Normally 0 84689bf0dad6SMatthew G. Knepley 846945da879fSVaclav Hapla Notes: 847045da879fSVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 847145da879fSVaclav Hapla This routine is only relevant for meshes that are fully interpolated across all ranks. 847245da879fSVaclav Hapla It will error out if a partially interpolated mesh is given on some rank. 847345da879fSVaclav Hapla It will do nothing for locally uninterpolated mesh (as there is nothing to check). 84749bf0dad6SMatthew G. Knepley 847595eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 847695eb5ee5SVaclav Hapla 84779bf0dad6SMatthew G. Knepley Level: developer 84789bf0dad6SMatthew G. Knepley 8479db781477SPatrick Sanan .seealso: `DMCreate()`, `DMPlexGetVTKCellHeight()`, `DMSetFromOptions()` 84809bf0dad6SMatthew G. Knepley @*/ 848125c50c26SVaclav Hapla PetscErrorCode DMPlexCheckFaces(DM dm, PetscInt cellHeight) 84829bf0dad6SMatthew G. Knepley { 8483ab91121cSMatthew G. Knepley PetscInt dim, depth, vStart, vEnd, cStart, cEnd, c, h; 8484899ea2b8SJacob Faibussowitsch DMPlexInterpolatedFlag interpEnum; 84859bf0dad6SMatthew G. Knepley 84869bf0dad6SMatthew G. Knepley PetscFunctionBegin; 84879bf0dad6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 84888f6815adSVaclav Hapla PetscCall(DMPlexIsInterpolatedCollective(dm, &interpEnum)); 848945da879fSVaclav Hapla if (interpEnum == DMPLEX_INTERPOLATED_NONE) PetscFunctionReturn(0); 84908f6815adSVaclav Hapla if (interpEnum != DMPLEX_INTERPOLATED_FULL) { 84918f6815adSVaclav Hapla PetscPrintf(PetscObjectComm((PetscObject)dm), "DMPlexCheckFaces() warning: Mesh is only partially interpolated, this is currently not supported"); 84928f6815adSVaclav Hapla PetscFunctionReturn(0); 8493899ea2b8SJacob Faibussowitsch } 8494899ea2b8SJacob Faibussowitsch 84959566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 84969566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 84979566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 8498ab91121cSMatthew G. Knepley for (h = cellHeight; h < PetscMin(depth, dim); ++h) { 84999566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, h, &cStart, &cEnd)); 85003554e41dSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 8501412e9a14SMatthew G. Knepley const PetscInt *cone, *ornt, *faceSizes, *faces; 8502412e9a14SMatthew G. Knepley const DMPolytopeType *faceTypes; 8503ba2698f1SMatthew G. Knepley DMPolytopeType ct; 8504412e9a14SMatthew G. Knepley PetscInt numFaces, coneSize, f; 8505412e9a14SMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, numCorners = 0, fOff = 0, unsplit; 85069bf0dad6SMatthew G. Knepley 85079566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &ct)); 85089566063dSJacob Faibussowitsch PetscCall(DMPlexCellUnsplitVertices_Private(dm, c, ct, &unsplit)); 8509412e9a14SMatthew G. Knepley if (unsplit) continue; 85109566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 85119566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 85129566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, c, &ornt)); 85139566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 85149bf0dad6SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 85159bf0dad6SMatthew G. Knepley const PetscInt p = closure[cl]; 85169bf0dad6SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) closure[numCorners++] = p; 85179bf0dad6SMatthew G. Knepley } 85189566063dSJacob Faibussowitsch PetscCall(DMPlexGetRawFaces_Internal(dm, ct, closure, &numFaces, &faceTypes, &faceSizes, &faces)); 851963a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == numFaces,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " of type %s has %" PetscInt_FMT " faces but should have %" PetscInt_FMT, c, DMPolytopeTypes[ct], coneSize, numFaces); 85209bf0dad6SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 8521d4961f80SStefano Zampini DMPolytopeType fct; 85229bf0dad6SMatthew G. Knepley PetscInt *fclosure = NULL, fclosureSize, cl, fnumCorners = 0, v; 85239bf0dad6SMatthew G. Knepley 85249566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[f], &fct)); 85259566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Internal(dm, cone[f], ornt[f], PETSC_TRUE, &fclosureSize, &fclosure)); 85269bf0dad6SMatthew G. Knepley for (cl = 0; cl < fclosureSize*2; cl += 2) { 85279bf0dad6SMatthew G. Knepley const PetscInt p = fclosure[cl]; 85289bf0dad6SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) fclosure[fnumCorners++] = p; 85299bf0dad6SMatthew G. Knepley } 853063a3b9bcSJacob Faibussowitsch PetscCheck(fnumCorners == faceSizes[f],PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " of type %s (cone idx %" PetscInt_FMT ") of cell %" PetscInt_FMT " of type %s has %" PetscInt_FMT " vertices but should have %" PetscInt_FMT, cone[f], DMPolytopeTypes[fct], f, c, DMPolytopeTypes[ct], fnumCorners, faceSizes[f]); 85319bf0dad6SMatthew G. Knepley for (v = 0; v < fnumCorners; ++v) { 8532b5a892a1SMatthew G. Knepley if (fclosure[v] != faces[fOff+v]) { 8533b5a892a1SMatthew G. Knepley PetscInt v1; 8534b5a892a1SMatthew G. Knepley 85359566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "face closure:")); 853663a3b9bcSJacob Faibussowitsch for (v1 = 0; v1 < fnumCorners; ++v1) PetscCall(PetscPrintf(PETSC_COMM_SELF, " %" PetscInt_FMT, fclosure[v1])); 85379566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\ncell face:")); 853863a3b9bcSJacob Faibussowitsch for (v1 = 0; v1 < fnumCorners; ++v1) PetscCall(PetscPrintf(PETSC_COMM_SELF, " %" PetscInt_FMT, faces[fOff+v1])); 85399566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 854063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " of type %s (cone idx %" PetscInt_FMT ", ornt %" PetscInt_FMT ") of cell %" PetscInt_FMT " of type %s vertex %" PetscInt_FMT ", %" PetscInt_FMT " != %" PetscInt_FMT, cone[f], DMPolytopeTypes[fct], f, ornt[f], c, DMPolytopeTypes[ct], v, fclosure[v], faces[fOff+v]); 8541b5a892a1SMatthew G. Knepley } 85429bf0dad6SMatthew G. Knepley } 85439566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[f], PETSC_TRUE, &fclosureSize, &fclosure)); 8544412e9a14SMatthew G. Knepley fOff += faceSizes[f]; 85459bf0dad6SMatthew G. Knepley } 85469566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreRawFaces_Internal(dm, ct, closure, &numFaces, &faceTypes, &faceSizes, &faces)); 85479566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 85489bf0dad6SMatthew G. Knepley } 85493554e41dSMatthew G. Knepley } 8550552f7358SJed Brown PetscFunctionReturn(0); 8551552f7358SJed Brown } 85523913d7c8SMatthew G. Knepley 8553bb6a34a8SMatthew G. Knepley /*@ 8554bb6a34a8SMatthew G. Knepley DMPlexCheckGeometry - Check the geometry of mesh cells 8555bb6a34a8SMatthew G. Knepley 8556bb6a34a8SMatthew G. Knepley Input Parameter: 8557bb6a34a8SMatthew G. Knepley . dm - The DMPlex object 8558bb6a34a8SMatthew G. Knepley 855995eb5ee5SVaclav Hapla Notes: 856095eb5ee5SVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 856195eb5ee5SVaclav Hapla 856295eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 8563bb6a34a8SMatthew G. Knepley 8564bb6a34a8SMatthew G. Knepley Level: developer 8565bb6a34a8SMatthew G. Knepley 8566db781477SPatrick Sanan .seealso: `DMCreate()`, `DMSetFromOptions()` 8567bb6a34a8SMatthew G. Knepley @*/ 8568bb6a34a8SMatthew G. Knepley PetscErrorCode DMPlexCheckGeometry(DM dm) 8569bb6a34a8SMatthew G. Knepley { 8570a2a9e04cSMatthew G. Knepley Vec coordinates; 8571bb6a34a8SMatthew G. Knepley PetscReal detJ, J[9], refVol = 1.0; 8572bb6a34a8SMatthew G. Knepley PetscReal vol; 8573412e9a14SMatthew G. Knepley PetscBool periodic; 857451a74b61SMatthew G. Knepley PetscInt dim, depth, dE, d, cStart, cEnd, c; 8575bb6a34a8SMatthew G. Knepley 8576bb6a34a8SMatthew G. Knepley PetscFunctionBegin; 85779566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 85789566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 857951a74b61SMatthew G. Knepley if (dim != dE) PetscFunctionReturn(0); 85809566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 85819566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &periodic, NULL, NULL, NULL)); 8582bb6a34a8SMatthew G. Knepley for (d = 0; d < dim; ++d) refVol *= 2.0; 85839566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 8584a2a9e04cSMatthew G. Knepley /* Make sure local coordinates are created, because that step is collective */ 85859566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 8586412e9a14SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 8587412e9a14SMatthew G. Knepley DMPolytopeType ct; 8588412e9a14SMatthew G. Knepley PetscInt unsplit; 8589412e9a14SMatthew G. Knepley PetscBool ignoreZeroVol = PETSC_FALSE; 8590412e9a14SMatthew G. Knepley 85919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &ct)); 8592412e9a14SMatthew G. Knepley switch (ct) { 8593412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 8594412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 8595412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 8596412e9a14SMatthew G. Knepley ignoreZeroVol = PETSC_TRUE; break; 8597412e9a14SMatthew G. Knepley default: break; 8598412e9a14SMatthew G. Knepley } 8599412e9a14SMatthew G. Knepley switch (ct) { 8600412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM: 8601412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 8602412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 8603a2a9e04cSMatthew G. Knepley case DM_POLYTOPE_PYRAMID: 8604412e9a14SMatthew G. Knepley continue; 8605412e9a14SMatthew G. Knepley default: break; 8606412e9a14SMatthew G. Knepley } 86079566063dSJacob Faibussowitsch PetscCall(DMPlexCellUnsplitVertices_Private(dm, c, ct, &unsplit)); 8608412e9a14SMatthew G. Knepley if (unsplit) continue; 86099566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, NULL, J, NULL, &detJ)); 86101dca8a05SBarry Smith PetscCheck(detJ >= -PETSC_SMALL && (detJ > 0.0 || ignoreZeroVol),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mesh cell %" PetscInt_FMT " of type %s is inverted, |J| = %g", c, DMPolytopeTypes[ct], (double) detJ); 861163a3b9bcSJacob Faibussowitsch PetscCall(PetscInfo(dm, "Cell %" PetscInt_FMT " FEM Volume %g\n", c, (double)(detJ*refVol))); 8612412e9a14SMatthew G. Knepley if (depth > 1 && !periodic) { 86139566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFVM(dm, c, &vol, NULL, NULL)); 86141dca8a05SBarry Smith PetscCheck(vol >= -PETSC_SMALL && (vol > 0.0 || ignoreZeroVol),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mesh cell %" PetscInt_FMT " of type %s is inverted, vol = %g", c, DMPolytopeTypes[ct], (double) vol); 861563a3b9bcSJacob Faibussowitsch PetscCall(PetscInfo(dm, "Cell %" PetscInt_FMT " FVM Volume %g\n", c, (double) vol)); 8616bb6a34a8SMatthew G. Knepley } 8617bb6a34a8SMatthew G. Knepley } 8618bb6a34a8SMatthew G. Knepley PetscFunctionReturn(0); 8619bb6a34a8SMatthew G. Knepley } 8620bb6a34a8SMatthew G. Knepley 862103da9461SVaclav Hapla /*@ 86227726db96SVaclav Hapla DMPlexCheckPointSF - Check that several necessary conditions are met for the Point SF of this plex. 86237726db96SVaclav Hapla 86247726db96SVaclav Hapla Collective 862503da9461SVaclav Hapla 862603da9461SVaclav Hapla Input Parameters: 86277726db96SVaclav Hapla + dm - The DMPlex object 86287726db96SVaclav Hapla - pointSF - The Point SF, or NULL for Point SF attached to DM 862903da9461SVaclav Hapla 8630e83a0d2dSVaclav Hapla Notes: 8631e83a0d2dSVaclav Hapla This is mainly intended for debugging/testing purposes. 863203da9461SVaclav Hapla 863395eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 863495eb5ee5SVaclav Hapla 863503da9461SVaclav Hapla Level: developer 863603da9461SVaclav Hapla 8637db781477SPatrick Sanan .seealso: `DMGetPointSF()`, `DMSetFromOptions()` 863803da9461SVaclav Hapla @*/ 86397726db96SVaclav Hapla PetscErrorCode DMPlexCheckPointSF(DM dm, PetscSF pointSF) 864003da9461SVaclav Hapla { 86417726db96SVaclav Hapla PetscInt l, nleaves, nroots, overlap; 86427726db96SVaclav Hapla const PetscInt *locals; 86437726db96SVaclav Hapla const PetscSFNode *remotes; 8644f0cfc026SVaclav Hapla PetscBool distributed; 86457726db96SVaclav Hapla MPI_Comm comm; 86467726db96SVaclav Hapla PetscMPIInt rank; 864703da9461SVaclav Hapla 864803da9461SVaclav Hapla PetscFunctionBegin; 864903da9461SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86507726db96SVaclav Hapla if (pointSF) PetscValidHeaderSpecific(pointSF, PETSCSF_CLASSID, 2); 86517726db96SVaclav Hapla else pointSF = dm->sf; 86527726db96SVaclav Hapla PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 86537726db96SVaclav Hapla PetscCheck(pointSF, comm, PETSC_ERR_ARG_WRONGSTATE, "DMPlex must have Point SF attached"); 86547726db96SVaclav Hapla PetscCallMPI(MPI_Comm_rank(comm, &rank)); 86557726db96SVaclav Hapla { 86567726db96SVaclav Hapla PetscMPIInt mpiFlag; 86577726db96SVaclav Hapla 86587726db96SVaclav Hapla PetscCallMPI(MPI_Comm_compare(comm, PetscObjectComm((PetscObject)pointSF),&mpiFlag)); 86597726db96SVaclav Hapla PetscCheck(mpiFlag == MPI_CONGRUENT || mpiFlag == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "DM and Point SF have different communicators (flag %d)",mpiFlag); 86607726db96SVaclav Hapla } 86617726db96SVaclav Hapla PetscCall(PetscSFGetGraph(pointSF, &nroots, &nleaves, &locals, &remotes)); 86629566063dSJacob Faibussowitsch PetscCall(DMPlexIsDistributed(dm, &distributed)); 86637726db96SVaclav Hapla if (!distributed) { 86647726db96SVaclav Hapla PetscCheck(nroots < 0 || nleaves == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Undistributed DMPlex cannot have non-empty PointSF (has %" PetscInt_FMT " roots, %" PetscInt_FMT " leaves)", nroots, nleaves); 86658918e3e2SVaclav Hapla PetscFunctionReturn(0); 86668918e3e2SVaclav Hapla } 86677726db96SVaclav Hapla PetscCheck(nroots >= 0, comm, PETSC_ERR_ARG_WRONGSTATE, "This DMPlex is distributed but its PointSF has no graph set (has %" PetscInt_FMT " roots, %" PetscInt_FMT " leaves)", nroots, nleaves); 86687726db96SVaclav Hapla PetscCall(DMPlexGetOverlap(dm, &overlap)); 866903da9461SVaclav Hapla 86707726db96SVaclav Hapla /* Check SF graph is compatible with DMPlex chart */ 86717726db96SVaclav Hapla { 86727726db96SVaclav Hapla PetscInt pStart, pEnd, maxLeaf; 86737726db96SVaclav Hapla 86747726db96SVaclav Hapla PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 86757726db96SVaclav Hapla PetscCall(PetscSFGetLeafRange(pointSF, NULL, &maxLeaf)); 86767726db96SVaclav Hapla PetscCheck(pEnd - pStart == nroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "pEnd - pStart = %" PetscInt_FMT " != nroots = %" PetscInt_FMT, pEnd-pStart, nroots); 86777726db96SVaclav Hapla PetscCheck(maxLeaf < pEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "maxLeaf = %" PetscInt_FMT " >= pEnd = %" PetscInt_FMT, maxLeaf, pEnd); 86787726db96SVaclav Hapla } 86797726db96SVaclav Hapla 86807726db96SVaclav Hapla /* Check Point SF has no local points referenced */ 86817726db96SVaclav Hapla for (l = 0; l < nleaves; l++) { 86827726db96SVaclav Hapla PetscAssert(remotes[l].rank != (PetscInt) rank, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains local point %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")", locals ? locals[l] : l, remotes[l].rank, remotes[l].index); 86837726db96SVaclav Hapla } 86847726db96SVaclav Hapla 86857726db96SVaclav Hapla /* Check there are no cells in interface */ 86867726db96SVaclav Hapla if (!overlap) { 86877726db96SVaclav Hapla PetscInt cellHeight, cStart, cEnd; 86887726db96SVaclav Hapla 86899566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 86909566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 8691f5869d18SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 86927726db96SVaclav Hapla const PetscInt point = locals ? locals[l] : l; 8693f5869d18SMatthew G. Knepley 86947726db96SVaclav Hapla PetscCheck(point < cStart || point >= cEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %" PetscInt_FMT " which is a cell", point); 86957726db96SVaclav Hapla } 869603da9461SVaclav Hapla } 8697ece87651SVaclav Hapla 86987726db96SVaclav Hapla /* If some point is in interface, then all its cone points must be also in interface (either as leaves or roots) */ 86997726db96SVaclav Hapla { 87007726db96SVaclav Hapla const PetscInt *rootdegree; 87017726db96SVaclav Hapla 87027726db96SVaclav Hapla PetscCall(PetscSFComputeDegreeBegin(pointSF, &rootdegree)); 87037726db96SVaclav Hapla PetscCall(PetscSFComputeDegreeEnd(pointSF, &rootdegree)); 8704f5869d18SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 87057726db96SVaclav Hapla const PetscInt point = locals ? locals[l] : l; 8706f5869d18SMatthew G. Knepley const PetscInt *cone; 8707f5869d18SMatthew G. Knepley PetscInt coneSize, c, idx; 8708f5869d18SMatthew G. Knepley 87099566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 87109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 8711f5869d18SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 8712f5869d18SMatthew G. Knepley if (!rootdegree[cone[c]]) { 87137726db96SVaclav Hapla if (locals) { 87149566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], nleaves, locals, &idx)); 87157726db96SVaclav Hapla } else { 87167726db96SVaclav Hapla idx = (cone[c] < nleaves) ? cone[c] : -1; 87177726db96SVaclav Hapla } 871863a3b9bcSJacob Faibussowitsch PetscCheck(idx >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %" PetscInt_FMT " but not %" PetscInt_FMT " from its cone", point, cone[c]); 8719f5869d18SMatthew G. Knepley } 8720f5869d18SMatthew G. Knepley } 8721ece87651SVaclav Hapla } 87227726db96SVaclav Hapla } 872303da9461SVaclav Hapla PetscFunctionReturn(0); 872403da9461SVaclav Hapla } 872503da9461SVaclav Hapla 87267f9d8d6cSVaclav Hapla /*@ 87277f9d8d6cSVaclav Hapla DMPlexCheck - Perform various checks of Plex sanity 87287f9d8d6cSVaclav Hapla 87297f9d8d6cSVaclav Hapla Input Parameter: 87307f9d8d6cSVaclav Hapla . dm - The DMPlex object 87317f9d8d6cSVaclav Hapla 87327f9d8d6cSVaclav Hapla Notes: 87337f9d8d6cSVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 87347f9d8d6cSVaclav Hapla 87357f9d8d6cSVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 87367f9d8d6cSVaclav Hapla 87377f9d8d6cSVaclav Hapla Currently does not include DMPlexCheckCellShape(). 87387f9d8d6cSVaclav Hapla 87397f9d8d6cSVaclav Hapla Level: developer 87407f9d8d6cSVaclav Hapla 87417f9d8d6cSVaclav Hapla .seealso: DMCreate(), DMSetFromOptions() 87427f9d8d6cSVaclav Hapla @*/ 87437f9d8d6cSVaclav Hapla PetscErrorCode DMPlexCheck(DM dm) 8744b5a892a1SMatthew G. Knepley { 87457f9d8d6cSVaclav Hapla PetscInt cellHeight; 87467f9d8d6cSVaclav Hapla 8747b5a892a1SMatthew G. Knepley PetscFunctionBegin; 87487f9d8d6cSVaclav Hapla PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 87499566063dSJacob Faibussowitsch PetscCall(DMPlexCheckSymmetry(dm)); 87509566063dSJacob Faibussowitsch PetscCall(DMPlexCheckSkeleton(dm, cellHeight)); 87519566063dSJacob Faibussowitsch PetscCall(DMPlexCheckFaces(dm, cellHeight)); 87529566063dSJacob Faibussowitsch PetscCall(DMPlexCheckGeometry(dm)); 87537726db96SVaclav Hapla PetscCall(DMPlexCheckPointSF(dm, NULL)); 87549566063dSJacob Faibussowitsch PetscCall(DMPlexCheckInterfaceCones(dm)); 8755b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 8756b5a892a1SMatthew G. Knepley } 8757b5a892a1SMatthew G. Knepley 8758068a5610SStefano Zampini typedef struct cell_stats 8759068a5610SStefano Zampini { 8760068a5610SStefano Zampini PetscReal min, max, sum, squaresum; 8761068a5610SStefano Zampini PetscInt count; 8762068a5610SStefano Zampini } cell_stats_t; 8763068a5610SStefano Zampini 876425befc3bSSatish Balay static void MPIAPI cell_stats_reduce(void *a, void *b, int * len, MPI_Datatype *datatype) 8765068a5610SStefano Zampini { 8766068a5610SStefano Zampini PetscInt i, N = *len; 8767068a5610SStefano Zampini 8768068a5610SStefano Zampini for (i = 0; i < N; i++) { 8769068a5610SStefano Zampini cell_stats_t *A = (cell_stats_t *) a; 8770068a5610SStefano Zampini cell_stats_t *B = (cell_stats_t *) b; 8771068a5610SStefano Zampini 8772068a5610SStefano Zampini B->min = PetscMin(A->min,B->min); 8773068a5610SStefano Zampini B->max = PetscMax(A->max,B->max); 8774068a5610SStefano Zampini B->sum += A->sum; 8775068a5610SStefano Zampini B->squaresum += A->squaresum; 8776068a5610SStefano Zampini B->count += A->count; 8777068a5610SStefano Zampini } 8778068a5610SStefano Zampini } 8779068a5610SStefano Zampini 8780068a5610SStefano Zampini /*@ 878143fa8764SMatthew G. Knepley DMPlexCheckCellShape - Checks the Jacobian of the mapping from reference to real cells and computes some minimal statistics. 8782068a5610SStefano Zampini 87838261a58bSMatthew G. Knepley Collective on dm 87848261a58bSMatthew G. Knepley 8785068a5610SStefano Zampini Input Parameters: 8786068a5610SStefano Zampini + dm - The DMPlex object 878743fa8764SMatthew G. Knepley . output - If true, statistics will be displayed on stdout 878843fa8764SMatthew G. Knepley - condLimit - Display all cells above this condition number, or PETSC_DETERMINE for no cell output 8789068a5610SStefano Zampini 879095eb5ee5SVaclav Hapla Notes: 879195eb5ee5SVaclav Hapla This is mainly intended for debugging/testing purposes. 879295eb5ee5SVaclav Hapla 879395eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 8794068a5610SStefano Zampini 8795068a5610SStefano Zampini Level: developer 8796068a5610SStefano Zampini 8797db781477SPatrick Sanan .seealso: `DMSetFromOptions()`, `DMPlexComputeOrthogonalQuality()` 8798068a5610SStefano Zampini @*/ 879943fa8764SMatthew G. Knepley PetscErrorCode DMPlexCheckCellShape(DM dm, PetscBool output, PetscReal condLimit) 8800068a5610SStefano Zampini { 8801068a5610SStefano Zampini DM dmCoarse; 880243fa8764SMatthew G. Knepley cell_stats_t stats, globalStats; 880343fa8764SMatthew G. Knepley MPI_Comm comm = PetscObjectComm((PetscObject)dm); 880443fa8764SMatthew G. Knepley PetscReal *J, *invJ, min = 0, max = 0, mean = 0, stdev = 0; 880543fa8764SMatthew G. Knepley PetscReal limit = condLimit > 0 ? condLimit : PETSC_MAX_REAL; 8806412e9a14SMatthew G. Knepley PetscInt cdim, cStart, cEnd, c, eStart, eEnd, count = 0; 880743fa8764SMatthew G. Knepley PetscMPIInt rank,size; 8808068a5610SStefano Zampini 8809068a5610SStefano Zampini PetscFunctionBegin; 8810068a5610SStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8811068a5610SStefano Zampini stats.min = PETSC_MAX_REAL; 8812068a5610SStefano Zampini stats.max = PETSC_MIN_REAL; 8813068a5610SStefano Zampini stats.sum = stats.squaresum = 0.; 8814068a5610SStefano Zampini stats.count = 0; 8815068a5610SStefano Zampini 88169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 88179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 88189566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm,&cdim)); 88199566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(PetscSqr(cdim), &J, PetscSqr(cdim), &invJ)); 88209566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm,0,&cStart,&cEnd)); 88219566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,1,&eStart,&eEnd)); 8822412e9a14SMatthew G. Knepley for (c = cStart; c < cEnd; c++) { 8823068a5610SStefano Zampini PetscInt i; 8824068a5610SStefano Zampini PetscReal frobJ = 0., frobInvJ = 0., cond2, cond, detJ; 8825068a5610SStefano Zampini 88269566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryAffineFEM(dm,c,NULL,J,invJ,&detJ)); 882763a3b9bcSJacob Faibussowitsch PetscCheck(detJ >= 0.0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mesh cell %" PetscInt_FMT " is inverted", c); 882843fa8764SMatthew G. Knepley for (i = 0; i < PetscSqr(cdim); ++i) { 8829068a5610SStefano Zampini frobJ += J[i] * J[i]; 8830068a5610SStefano Zampini frobInvJ += invJ[i] * invJ[i]; 8831068a5610SStefano Zampini } 8832068a5610SStefano Zampini cond2 = frobJ * frobInvJ; 8833068a5610SStefano Zampini cond = PetscSqrtReal(cond2); 8834068a5610SStefano Zampini 8835068a5610SStefano Zampini stats.min = PetscMin(stats.min,cond); 8836068a5610SStefano Zampini stats.max = PetscMax(stats.max,cond); 8837068a5610SStefano Zampini stats.sum += cond; 8838068a5610SStefano Zampini stats.squaresum += cond2; 8839068a5610SStefano Zampini stats.count++; 88408261a58bSMatthew G. Knepley if (output && cond > limit) { 884143fa8764SMatthew G. Knepley PetscSection coordSection; 884243fa8764SMatthew G. Knepley Vec coordsLocal; 884343fa8764SMatthew G. Knepley PetscScalar *coords = NULL; 884443fa8764SMatthew G. Knepley PetscInt Nv, d, clSize, cl, *closure = NULL; 884543fa8764SMatthew G. Knepley 88469566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordsLocal)); 88479566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 88489566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, coordSection, coordsLocal, c, &Nv, &coords)); 884963a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "[%d] Cell %" PetscInt_FMT " cond %g\n", rank, c, (double) cond)); 885043fa8764SMatthew G. Knepley for (i = 0; i < Nv/cdim; ++i) { 885163a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, " Vertex %" PetscInt_FMT ": (", i)); 885243fa8764SMatthew G. Knepley for (d = 0; d < cdim; ++d) { 88539566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscSynchronizedPrintf(comm, ", ")); 88549566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "%g", (double) PetscRealPart(coords[i*cdim+d]))); 885543fa8764SMatthew G. Knepley } 88569566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, ")\n")); 885743fa8764SMatthew G. Knepley } 88589566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure)); 885943fa8764SMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 886043fa8764SMatthew G. Knepley const PetscInt edge = closure[cl]; 886143fa8764SMatthew G. Knepley 886243fa8764SMatthew G. Knepley if ((edge >= eStart) && (edge < eEnd)) { 886343fa8764SMatthew G. Knepley PetscReal len; 886443fa8764SMatthew G. Knepley 88659566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFVM(dm, edge, &len, NULL, NULL)); 886663a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, " Edge %" PetscInt_FMT ": length %g\n", edge, (double) len)); 886743fa8764SMatthew G. Knepley } 886843fa8764SMatthew G. Knepley } 88699566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure)); 88709566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, coordSection, coordsLocal, c, &Nv, &coords)); 887143fa8764SMatthew G. Knepley } 8872068a5610SStefano Zampini } 88739566063dSJacob Faibussowitsch if (output) PetscCall(PetscSynchronizedFlush(comm, NULL)); 8874068a5610SStefano Zampini 8875068a5610SStefano Zampini if (size > 1) { 8876068a5610SStefano Zampini PetscMPIInt blockLengths[2] = {4,1}; 8877068a5610SStefano Zampini MPI_Aint blockOffsets[2] = {offsetof(cell_stats_t,min),offsetof(cell_stats_t,count)}; 8878068a5610SStefano Zampini MPI_Datatype blockTypes[2] = {MPIU_REAL,MPIU_INT}, statType; 8879068a5610SStefano Zampini MPI_Op statReduce; 8880068a5610SStefano Zampini 88819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_struct(2,blockLengths,blockOffsets,blockTypes,&statType)); 88829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&statType)); 88839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(cell_stats_reduce, PETSC_TRUE, &statReduce)); 88849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&stats,&globalStats,1,statType,statReduce,0,comm)); 88859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&statReduce)); 88869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&statType)); 8887068a5610SStefano Zampini } else { 88889566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(&globalStats,&stats,1)); 8889068a5610SStefano Zampini } 8890dd400576SPatrick Sanan if (rank == 0) { 8891068a5610SStefano Zampini count = globalStats.count; 8892068a5610SStefano Zampini min = globalStats.min; 8893068a5610SStefano Zampini max = globalStats.max; 8894068a5610SStefano Zampini mean = globalStats.sum / globalStats.count; 8895068a5610SStefano Zampini stdev = globalStats.count > 1 ? PetscSqrtReal(PetscMax((globalStats.squaresum - globalStats.count * mean * mean) / (globalStats.count - 1),0)) : 0.0; 8896068a5610SStefano Zampini } 8897068a5610SStefano Zampini 8898068a5610SStefano Zampini if (output) { 889963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(comm,"Mesh with %" PetscInt_FMT " cells, shape condition numbers: min = %g, max = %g, mean = %g, stddev = %g\n", count, (double) min, (double) max, (double) mean, (double) stdev)); 8900068a5610SStefano Zampini } 89019566063dSJacob Faibussowitsch PetscCall(PetscFree2(J,invJ)); 8902068a5610SStefano Zampini 89039566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dm,&dmCoarse)); 8904068a5610SStefano Zampini if (dmCoarse) { 8905068a5610SStefano Zampini PetscBool isplex; 8906068a5610SStefano Zampini 89079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dmCoarse,DMPLEX,&isplex)); 8908068a5610SStefano Zampini if (isplex) { 89099566063dSJacob Faibussowitsch PetscCall(DMPlexCheckCellShape(dmCoarse,output,condLimit)); 8910068a5610SStefano Zampini } 8911068a5610SStefano Zampini } 8912068a5610SStefano Zampini PetscFunctionReturn(0); 8913068a5610SStefano Zampini } 8914068a5610SStefano Zampini 8915f108dbd7SJacob Faibussowitsch /*@ 8916f108dbd7SJacob Faibussowitsch DMPlexComputeOrthogonalQuality - Compute cell-wise orthogonal quality mesh statistic. Optionally tags all cells with 8917f108dbd7SJacob Faibussowitsch orthogonal quality below given tolerance. 8918f108dbd7SJacob Faibussowitsch 89196ed19f2fSJacob Faibussowitsch Collective on dm 8920f108dbd7SJacob Faibussowitsch 8921f108dbd7SJacob Faibussowitsch Input Parameters: 8922f108dbd7SJacob Faibussowitsch + dm - The DMPlex object 8923f108dbd7SJacob Faibussowitsch . fv - Optional PetscFV object for pre-computed cell/face centroid information 8924f108dbd7SJacob Faibussowitsch - atol - [0, 1] Absolute tolerance for tagging cells. 8925f108dbd7SJacob Faibussowitsch 8926f108dbd7SJacob Faibussowitsch Output Parameters: 8927f108dbd7SJacob Faibussowitsch + OrthQual - Vec containing orthogonal quality per cell 8928f108dbd7SJacob Faibussowitsch - OrthQualLabel - DMLabel tagging cells below atol with DM_ADAPT_REFINE 8929f108dbd7SJacob Faibussowitsch 8930f108dbd7SJacob Faibussowitsch Options Database Keys: 8931f108dbd7SJacob Faibussowitsch + -dm_plex_orthogonal_quality_label_view - view OrthQualLabel if label is requested. Currently only PETSCVIEWERASCII is 8932f108dbd7SJacob Faibussowitsch supported. 8933f108dbd7SJacob Faibussowitsch - -dm_plex_orthogonal_quality_vec_view - view OrthQual vector. 8934f108dbd7SJacob Faibussowitsch 8935f108dbd7SJacob Faibussowitsch Notes: 8936f108dbd7SJacob Faibussowitsch Orthogonal quality is given by the following formula: 8937f108dbd7SJacob Faibussowitsch 8938f108dbd7SJacob Faibussowitsch \min \left[ \frac{A_i \cdot f_i}{\|A_i\| \|f_i\|} , \frac{A_i \cdot c_i}{\|A_i\| \|c_i\|} \right] 8939f108dbd7SJacob Faibussowitsch 8940f108dbd7SJacob Faibussowitsch Where A_i is the i'th face-normal vector, f_i is the vector from the cell centroid to the i'th face centroid, and c_i 8941f108dbd7SJacob Faibussowitsch is the vector from the current cells centroid to the centroid of its i'th neighbor (which shares a face with the 8942f108dbd7SJacob Faibussowitsch current cell). This computes the vector similarity between each cell face and its corresponding neighbor centroid by 8943f108dbd7SJacob Faibussowitsch calculating the cosine of the angle between these vectors. 8944f108dbd7SJacob Faibussowitsch 8945f108dbd7SJacob Faibussowitsch Orthogonal quality ranges from 1 (best) to 0 (worst). 8946f108dbd7SJacob Faibussowitsch 8947f108dbd7SJacob Faibussowitsch This routine is mainly useful for FVM, however is not restricted to only FVM. The PetscFV object is optionally used to check for 8948f108dbd7SJacob Faibussowitsch pre-computed FVM cell data, but if it is not passed in then this data will be computed. 8949f108dbd7SJacob Faibussowitsch 8950f108dbd7SJacob Faibussowitsch Cells are tagged if they have an orthogonal quality less than or equal to the absolute tolerance. 8951f108dbd7SJacob Faibussowitsch 8952f108dbd7SJacob Faibussowitsch Level: intermediate 8953f108dbd7SJacob Faibussowitsch 8954db781477SPatrick Sanan .seealso: `DMPlexCheckCellShape()`, `DMCreateLabel()` 8955f108dbd7SJacob Faibussowitsch @*/ 8956f108dbd7SJacob Faibussowitsch PetscErrorCode DMPlexComputeOrthogonalQuality(DM dm, PetscFV fv, PetscReal atol, Vec *OrthQual, DMLabel *OrthQualLabel) 8957f108dbd7SJacob Faibussowitsch { 89586ed19f2fSJacob Faibussowitsch PetscInt nc, cellHeight, cStart, cEnd, cell, cellIter = 0; 89596ed19f2fSJacob Faibussowitsch PetscInt *idx; 89606ed19f2fSJacob Faibussowitsch PetscScalar *oqVals; 8961f108dbd7SJacob Faibussowitsch const PetscScalar *cellGeomArr, *faceGeomArr; 89626ed19f2fSJacob Faibussowitsch PetscReal *ci, *fi, *Ai; 8963f108dbd7SJacob Faibussowitsch MPI_Comm comm; 8964f108dbd7SJacob Faibussowitsch Vec cellgeom, facegeom; 8965f108dbd7SJacob Faibussowitsch DM dmFace, dmCell; 8966f108dbd7SJacob Faibussowitsch IS glob; 8967f108dbd7SJacob Faibussowitsch ISLocalToGlobalMapping ltog; 8968f108dbd7SJacob Faibussowitsch PetscViewer vwr; 8969f108dbd7SJacob Faibussowitsch 8970f108dbd7SJacob Faibussowitsch PetscFunctionBegin; 8971f108dbd7SJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89726ed19f2fSJacob Faibussowitsch if (fv) {PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);} 8973f108dbd7SJacob Faibussowitsch PetscValidPointer(OrthQual, 4); 89746bdcaf15SBarry Smith PetscCheck(atol >= 0.0 && atol <= 1.0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Absolute tolerance %g not in [0,1]",(double)atol); 89759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 89769566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &nc)); 897763a3b9bcSJacob Faibussowitsch PetscCheck(nc >= 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM must have dimension >= 2 (current %" PetscInt_FMT ")", nc); 89786ed19f2fSJacob Faibussowitsch { 89796ed19f2fSJacob Faibussowitsch DMPlexInterpolatedFlag interpFlag; 89806ed19f2fSJacob Faibussowitsch 89819566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpFlag)); 8982f108dbd7SJacob Faibussowitsch if (interpFlag != DMPLEX_INTERPOLATED_FULL) { 8983f108dbd7SJacob Faibussowitsch PetscMPIInt rank; 8984f108dbd7SJacob Faibussowitsch 89859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 898698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM must be fully interpolated, DM on rank %d is not fully interpolated", rank); 8987f108dbd7SJacob Faibussowitsch } 89886ed19f2fSJacob Faibussowitsch } 8989f108dbd7SJacob Faibussowitsch if (OrthQualLabel) { 8990f108dbd7SJacob Faibussowitsch PetscValidPointer(OrthQualLabel, 5); 89919566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, "Orthogonal_Quality")); 89929566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "Orthogonal_Quality", OrthQualLabel)); 89936ed19f2fSJacob Faibussowitsch } else {*OrthQualLabel = NULL;} 89949566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 89959566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 89969566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCellNumbering_Internal(dm, PETSC_TRUE, &glob)); 89979566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(glob, <og)); 89989566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(ltog, ISLOCALTOGLOBALMAPPINGHASH)); 89999566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, OrthQual)); 90009566063dSJacob Faibussowitsch PetscCall(VecSetType(*OrthQual, VECSTANDARD)); 90019566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*OrthQual, cEnd-cStart, PETSC_DETERMINE)); 90029566063dSJacob Faibussowitsch PetscCall(VecSetLocalToGlobalMapping(*OrthQual, ltog)); 90039566063dSJacob Faibussowitsch PetscCall(VecSetUp(*OrthQual)); 90049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 90059566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<og)); 90069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(dm, fv, &cellgeom, &facegeom, NULL)); 90079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellgeom, &cellGeomArr)); 90089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(facegeom, &faceGeomArr)); 90099566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellgeom, &dmCell)); 90109566063dSJacob Faibussowitsch PetscCall(VecGetDM(facegeom, &dmFace)); 90119566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(cEnd-cStart, &idx, cEnd-cStart, &oqVals, nc, &ci, nc, &fi, nc, &Ai)); 90126ed19f2fSJacob Faibussowitsch for (cell = cStart; cell < cEnd; cellIter++,cell++) { 90136ed19f2fSJacob Faibussowitsch PetscInt cellneigh, cellneighiter = 0, adjSize = PETSC_DETERMINE; 9014f108dbd7SJacob Faibussowitsch PetscInt cellarr[2], *adj = NULL; 9015f108dbd7SJacob Faibussowitsch PetscScalar *cArr, *fArr; 9016898cd552SSatish Balay PetscReal minvalc = 1.0, minvalf = 1.0; 9017f108dbd7SJacob Faibussowitsch PetscFVCellGeom *cg; 9018f108dbd7SJacob Faibussowitsch 90196ed19f2fSJacob Faibussowitsch idx[cellIter] = cell-cStart; 9020f108dbd7SJacob Faibussowitsch cellarr[0] = cell; 9021f108dbd7SJacob Faibussowitsch /* Make indexing into cellGeom easier */ 90229566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cell, cellGeomArr, &cg)); 90239566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Internal(dm, cell, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &adjSize, &adj)); 9024f108dbd7SJacob Faibussowitsch /* Technically 1 too big, but easier than fiddling with empty adjacency array */ 90259566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(adjSize, &cArr, adjSize, &fArr)); 90266ed19f2fSJacob Faibussowitsch for (cellneigh = 0; cellneigh < adjSize; cellneighiter++,cellneigh++) { 90276ed19f2fSJacob Faibussowitsch PetscInt i; 90286ed19f2fSJacob Faibussowitsch const PetscInt neigh = adj[cellneigh]; 9029f108dbd7SJacob Faibussowitsch PetscReal normci = 0, normfi = 0, normai = 0; 9030f108dbd7SJacob Faibussowitsch PetscFVCellGeom *cgneigh; 9031f108dbd7SJacob Faibussowitsch PetscFVFaceGeom *fg; 9032f108dbd7SJacob Faibussowitsch 9033f108dbd7SJacob Faibussowitsch /* Don't count ourselves in the neighbor list */ 9034f108dbd7SJacob Faibussowitsch if (neigh == cell) continue; 90359566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, neigh, cellGeomArr, &cgneigh)); 9036f108dbd7SJacob Faibussowitsch cellarr[1] = neigh; 90376ed19f2fSJacob Faibussowitsch { 90386ed19f2fSJacob Faibussowitsch PetscInt numcovpts; 90396ed19f2fSJacob Faibussowitsch const PetscInt *covpts; 90406ed19f2fSJacob Faibussowitsch 90419566063dSJacob Faibussowitsch PetscCall(DMPlexGetMeet(dm, 2, cellarr, &numcovpts, &covpts)); 90429566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, covpts[0], faceGeomArr, &fg)); 90439566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreMeet(dm, 2, cellarr, &numcovpts, &covpts)); 90446ed19f2fSJacob Faibussowitsch } 9045f108dbd7SJacob Faibussowitsch 9046f108dbd7SJacob Faibussowitsch /* Compute c_i, f_i and their norms */ 9047f108dbd7SJacob Faibussowitsch for (i = 0; i < nc; i++) { 9048f108dbd7SJacob Faibussowitsch ci[i] = cgneigh->centroid[i] - cg->centroid[i]; 9049f108dbd7SJacob Faibussowitsch fi[i] = fg->centroid[i] - cg->centroid[i]; 9050f108dbd7SJacob Faibussowitsch Ai[i] = fg->normal[i]; 9051addd1e01SJunchao Zhang normci += PetscPowReal(ci[i], 2); 9052addd1e01SJunchao Zhang normfi += PetscPowReal(fi[i], 2); 9053addd1e01SJunchao Zhang normai += PetscPowReal(Ai[i], 2); 9054f108dbd7SJacob Faibussowitsch } 9055addd1e01SJunchao Zhang normci = PetscSqrtReal(normci); 9056addd1e01SJunchao Zhang normfi = PetscSqrtReal(normfi); 9057addd1e01SJunchao Zhang normai = PetscSqrtReal(normai); 9058f108dbd7SJacob Faibussowitsch 9059f108dbd7SJacob Faibussowitsch /* Normalize and compute for each face-cell-normal pair */ 9060f108dbd7SJacob Faibussowitsch for (i = 0; i < nc; i++) { 9061f108dbd7SJacob Faibussowitsch ci[i] = ci[i]/normci; 9062f108dbd7SJacob Faibussowitsch fi[i] = fi[i]/normfi; 9063f108dbd7SJacob Faibussowitsch Ai[i] = Ai[i]/normai; 9064f108dbd7SJacob Faibussowitsch /* PetscAbs because I don't know if normals are guaranteed to point out */ 9065f108dbd7SJacob Faibussowitsch cArr[cellneighiter] += PetscAbs(Ai[i]*ci[i]); 9066f108dbd7SJacob Faibussowitsch fArr[cellneighiter] += PetscAbs(Ai[i]*fi[i]); 9067f108dbd7SJacob Faibussowitsch } 9068f108dbd7SJacob Faibussowitsch if (PetscRealPart(cArr[cellneighiter]) < minvalc) { 9069f108dbd7SJacob Faibussowitsch minvalc = PetscRealPart(cArr[cellneighiter]); 9070f108dbd7SJacob Faibussowitsch } 9071f108dbd7SJacob Faibussowitsch if (PetscRealPart(fArr[cellneighiter]) < minvalf) { 9072f108dbd7SJacob Faibussowitsch minvalf = PetscRealPart(fArr[cellneighiter]); 9073f108dbd7SJacob Faibussowitsch } 9074f108dbd7SJacob Faibussowitsch } 90759566063dSJacob Faibussowitsch PetscCall(PetscFree(adj)); 90769566063dSJacob Faibussowitsch PetscCall(PetscFree2(cArr, fArr)); 9077f108dbd7SJacob Faibussowitsch /* Defer to cell if they're equal */ 90786ed19f2fSJacob Faibussowitsch oqVals[cellIter] = PetscMin(minvalf, minvalc); 9079f108dbd7SJacob Faibussowitsch if (OrthQualLabel) { 90809566063dSJacob Faibussowitsch if (PetscRealPart(oqVals[cellIter]) <= atol) PetscCall(DMLabelSetValue(*OrthQualLabel, cell, DM_ADAPT_REFINE)); 9081f108dbd7SJacob Faibussowitsch } 9082f108dbd7SJacob Faibussowitsch } 90839566063dSJacob Faibussowitsch PetscCall(VecSetValuesLocal(*OrthQual, cEnd-cStart, idx, oqVals, INSERT_VALUES)); 90849566063dSJacob Faibussowitsch PetscCall(VecAssemblyBegin(*OrthQual)); 90859566063dSJacob Faibussowitsch PetscCall(VecAssemblyEnd(*OrthQual)); 90869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellgeom, &cellGeomArr)); 90879566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(facegeom, &faceGeomArr)); 90889566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(comm, NULL, NULL, "-dm_plex_orthogonal_quality_label_view", &vwr, NULL, NULL)); 9089f108dbd7SJacob Faibussowitsch if (OrthQualLabel) { 90909566063dSJacob Faibussowitsch if (vwr) PetscCall(DMLabelView(*OrthQualLabel, vwr)); 9091f108dbd7SJacob Faibussowitsch } 90929566063dSJacob Faibussowitsch PetscCall(PetscFree5(idx, oqVals, ci, fi, Ai)); 90939566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&vwr)); 90949566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(*OrthQual, NULL, "-dm_plex_orthogonal_quality_vec_view")); 9095f108dbd7SJacob Faibussowitsch PetscFunctionReturn(0); 9096f108dbd7SJacob Faibussowitsch } 9097f108dbd7SJacob Faibussowitsch 90981eb70e55SToby Isaac /* this is here insead of DMGetOutputDM because output DM still has constraints in the local indices that affect 90991eb70e55SToby Isaac * interpolator construction */ 91001eb70e55SToby Isaac static PetscErrorCode DMGetFullDM(DM dm, DM *odm) 91011eb70e55SToby Isaac { 91021eb70e55SToby Isaac PetscSection section, newSection, gsection; 91031eb70e55SToby Isaac PetscSF sf; 91041eb70e55SToby Isaac PetscBool hasConstraints, ghasConstraints; 91051eb70e55SToby Isaac 91061eb70e55SToby Isaac PetscFunctionBegin; 91071eb70e55SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 91081eb70e55SToby Isaac PetscValidPointer(odm,2); 91099566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 91109566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 91119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&hasConstraints, &ghasConstraints, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject) dm))); 91121eb70e55SToby Isaac if (!ghasConstraints) { 91139566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 91141eb70e55SToby Isaac *odm = dm; 91151eb70e55SToby Isaac PetscFunctionReturn(0); 91161eb70e55SToby Isaac } 91179566063dSJacob Faibussowitsch PetscCall(DMClone(dm, odm)); 91189566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, *odm)); 91199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(*odm, &newSection)); 91209566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(*odm, &sf)); 91219566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(newSection, sf, PETSC_TRUE, PETSC_FALSE, &gsection)); 91229566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(*odm, gsection)); 91239566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 91241eb70e55SToby Isaac PetscFunctionReturn(0); 91251eb70e55SToby Isaac } 91261eb70e55SToby Isaac 91271eb70e55SToby Isaac static PetscErrorCode DMCreateAffineInterpolationCorrection_Plex(DM dmc, DM dmf, Vec *shift) 91281eb70e55SToby Isaac { 91291eb70e55SToby Isaac DM dmco, dmfo; 91301eb70e55SToby Isaac Mat interpo; 91311eb70e55SToby Isaac Vec rscale; 91321eb70e55SToby Isaac Vec cglobalo, clocal; 91331eb70e55SToby Isaac Vec fglobal, fglobalo, flocal; 91341eb70e55SToby Isaac PetscBool regular; 91351eb70e55SToby Isaac 91361eb70e55SToby Isaac PetscFunctionBegin; 91379566063dSJacob Faibussowitsch PetscCall(DMGetFullDM(dmc, &dmco)); 91389566063dSJacob Faibussowitsch PetscCall(DMGetFullDM(dmf, &dmfo)); 91399566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dmfo, dmco)); 91409566063dSJacob Faibussowitsch PetscCall(DMPlexGetRegularRefinement(dmf, ®ular)); 91419566063dSJacob Faibussowitsch PetscCall(DMPlexSetRegularRefinement(dmfo, regular)); 91429566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolation(dmco, dmfo, &interpo, &rscale)); 91439566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dmco, &cglobalo)); 91449566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dmc, &clocal)); 91459566063dSJacob Faibussowitsch PetscCall(VecSet(cglobalo, 0.)); 91469566063dSJacob Faibussowitsch PetscCall(VecSet(clocal, 0.)); 91479566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dmf, &fglobal)); 91489566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dmfo, &fglobalo)); 91499566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dmf, &flocal)); 91509566063dSJacob Faibussowitsch PetscCall(VecSet(fglobal, 0.)); 91519566063dSJacob Faibussowitsch PetscCall(VecSet(fglobalo, 0.)); 91529566063dSJacob Faibussowitsch PetscCall(VecSet(flocal, 0.)); 91539566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dmc, PETSC_TRUE, clocal, 0., NULL, NULL, NULL)); 91549566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dmco, clocal, INSERT_VALUES, cglobalo)); 91559566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dmco, clocal, INSERT_VALUES, cglobalo)); 91569566063dSJacob Faibussowitsch PetscCall(MatMult(interpo, cglobalo, fglobalo)); 91579566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmfo, fglobalo, INSERT_VALUES, flocal)); 91589566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmfo, fglobalo, INSERT_VALUES, flocal)); 91599566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dmf, flocal, INSERT_VALUES, fglobal)); 91609566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dmf, flocal, INSERT_VALUES, fglobal)); 91611eb70e55SToby Isaac *shift = fglobal; 91629566063dSJacob Faibussowitsch PetscCall(VecDestroy(&flocal)); 91639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fglobalo)); 91649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&clocal)); 91659566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cglobalo)); 91669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&rscale)); 91679566063dSJacob Faibussowitsch PetscCall(MatDestroy(&interpo)); 91689566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmfo)); 91699566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmco)); 91701eb70e55SToby Isaac PetscFunctionReturn(0); 91711eb70e55SToby Isaac } 91721eb70e55SToby Isaac 91731eb70e55SToby Isaac PETSC_INTERN PetscErrorCode DMInterpolateSolution_Plex(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 91741eb70e55SToby Isaac { 91751eb70e55SToby Isaac PetscObject shifto; 91761eb70e55SToby Isaac Vec shift; 91771eb70e55SToby Isaac 91781eb70e55SToby Isaac PetscFunctionBegin; 91791eb70e55SToby Isaac if (!interp) { 91801eb70e55SToby Isaac Vec rscale; 91811eb70e55SToby Isaac 91829566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolation(coarse, fine, &interp, &rscale)); 91839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&rscale)); 91841eb70e55SToby Isaac } else { 91859566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)interp)); 91861eb70e55SToby Isaac } 91879566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)interp, "_DMInterpolateSolution_Plex_Vec", &shifto)); 91881eb70e55SToby Isaac if (!shifto) { 91899566063dSJacob Faibussowitsch PetscCall(DMCreateAffineInterpolationCorrection_Plex(coarse, fine, &shift)); 91909566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)interp, "_DMInterpolateSolution_Plex_Vec", (PetscObject) shift)); 91911eb70e55SToby Isaac shifto = (PetscObject) shift; 91929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&shift)); 91931eb70e55SToby Isaac } 91941eb70e55SToby Isaac shift = (Vec) shifto; 91959566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 91969566063dSJacob Faibussowitsch PetscCall(VecAXPY(fineSol, 1.0, shift)); 91979566063dSJacob Faibussowitsch PetscCall(MatDestroy(&interp)); 91981eb70e55SToby Isaac PetscFunctionReturn(0); 91991eb70e55SToby Isaac } 92001eb70e55SToby Isaac 9201bceba477SMatthew G. Knepley /* Pointwise interpolation 9202bceba477SMatthew G. Knepley Just code FEM for now 9203bceba477SMatthew G. Knepley u^f = I u^c 92044ca5e9f5SMatthew G. Knepley sum_k u^f_k phi^f_k = I sum_j u^c_j phi^c_j 92054ca5e9f5SMatthew G. Knepley u^f_i = sum_j psi^f_i I phi^c_j u^c_j 92064ca5e9f5SMatthew G. Knepley I_{ij} = psi^f_i phi^c_j 9207bceba477SMatthew G. Knepley */ 9208bceba477SMatthew G. Knepley PetscErrorCode DMCreateInterpolation_Plex(DM dmCoarse, DM dmFine, Mat *interpolation, Vec *scaling) 9209bceba477SMatthew G. Knepley { 9210bceba477SMatthew G. Knepley PetscSection gsc, gsf; 9211bceba477SMatthew G. Knepley PetscInt m, n; 9212a063dac3SMatthew G. Knepley void *ctx; 921368132eb9SMatthew G. Knepley DM cdm; 9214cf51de39SMatthew G. Knepley PetscBool regular, ismatis, isRefined = dmCoarse->data == dmFine->data ? PETSC_FALSE : PETSC_TRUE; 9215bceba477SMatthew G. Knepley 9216bceba477SMatthew G. Knepley PetscFunctionBegin; 92179566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 92189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &m)); 92199566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 92209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &n)); 922168132eb9SMatthew G. Knepley 92229566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(dmCoarse->mattype, MATIS, &ismatis)); 92239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject) dmCoarse), interpolation)); 92249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*interpolation, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 92259566063dSJacob Faibussowitsch PetscCall(MatSetType(*interpolation, ismatis ? MATAIJ : dmCoarse->mattype)); 92269566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dmFine, &ctx)); 922768132eb9SMatthew G. Knepley 92289566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 92299566063dSJacob Faibussowitsch PetscCall(DMPlexGetRegularRefinement(dmFine, ®ular)); 92309566063dSJacob Faibussowitsch if (!isRefined || (regular && cdm == dmCoarse)) PetscCall(DMPlexComputeInterpolatorNested(dmCoarse, dmFine, isRefined, *interpolation, ctx)); 92319566063dSJacob Faibussowitsch else PetscCall(DMPlexComputeInterpolatorGeneral(dmCoarse, dmFine, *interpolation, ctx)); 92329566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*interpolation, NULL, "-interp_mat_view")); 92334db47ee9SStefano Zampini if (scaling) { 92345d1c2e58SMatthew G. Knepley /* Use naive scaling */ 92359566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolationScale(dmCoarse, dmFine, *interpolation, scaling)); 92364db47ee9SStefano Zampini } 9237a063dac3SMatthew G. Knepley PetscFunctionReturn(0); 9238a063dac3SMatthew G. Knepley } 9239bceba477SMatthew G. Knepley 92406dbf9973SLawrence Mitchell PetscErrorCode DMCreateInjection_Plex(DM dmCoarse, DM dmFine, Mat *mat) 9241a063dac3SMatthew G. Knepley { 92426dbf9973SLawrence Mitchell VecScatter ctx; 924390748bafSMatthew G. Knepley 9244a063dac3SMatthew G. Knepley PetscFunctionBegin; 92459566063dSJacob Faibussowitsch PetscCall(DMPlexComputeInjectorFEM(dmCoarse, dmFine, &ctx, NULL)); 92469566063dSJacob Faibussowitsch PetscCall(MatCreateScatter(PetscObjectComm((PetscObject)ctx), ctx, mat)); 92479566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&ctx)); 9248bceba477SMatthew G. Knepley PetscFunctionReturn(0); 9249bceba477SMatthew G. Knepley } 9250bceba477SMatthew G. Knepley 92513e9753d6SMatthew G. Knepley static void g0_identity_private(PetscInt dim, PetscInt Nf, PetscInt NfAux, 92523e9753d6SMatthew G. Knepley const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 92533e9753d6SMatthew G. Knepley const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 92543e9753d6SMatthew G. Knepley PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g0[]) 92553e9753d6SMatthew G. Knepley { 925600635df3SMatthew G. Knepley const PetscInt Nc = uOff[1] - uOff[0]; 925700635df3SMatthew G. Knepley PetscInt c; 925800635df3SMatthew G. Knepley for (c = 0; c < Nc; ++c) g0[c*Nc+c] = 1.0; 92593e9753d6SMatthew G. Knepley } 92603e9753d6SMatthew G. Knepley 9261b4937a87SMatthew G. Knepley PetscErrorCode DMCreateMassMatrixLumped_Plex(DM dm, Vec *mass) 9262b4937a87SMatthew G. Knepley { 9263b4937a87SMatthew G. Knepley DM dmc; 9264b4937a87SMatthew G. Knepley PetscDS ds; 9265b4937a87SMatthew G. Knepley Vec ones, locmass; 9266b4937a87SMatthew G. Knepley IS cellIS; 9267b4937a87SMatthew G. Knepley PetscFormKey key; 9268b4937a87SMatthew G. Knepley PetscInt depth; 9269b4937a87SMatthew G. Knepley 9270b4937a87SMatthew G. Knepley PetscFunctionBegin; 92719566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dmc)); 92729566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dmc)); 92739566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &ds)); 92749566063dSJacob Faibussowitsch PetscCall(PetscDSSetJacobian(ds, 0, 0, g0_identity_private, NULL, NULL, NULL)); 92759566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dmc, mass)); 92769566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmc, &ones)); 92779566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmc, &locmass)); 92789566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dmc, &depth)); 92799566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(dmc, "depth", depth, &cellIS)); 92809566063dSJacob Faibussowitsch PetscCall(VecSet(locmass, 0.0)); 92819566063dSJacob Faibussowitsch PetscCall(VecSet(ones, 1.0)); 9282b4937a87SMatthew G. Knepley key.label = NULL; 9283b4937a87SMatthew G. Knepley key.value = 0; 9284b4937a87SMatthew G. Knepley key.field = 0; 9285b4937a87SMatthew G. Knepley key.part = 0; 92869566063dSJacob Faibussowitsch PetscCall(DMPlexComputeJacobian_Action_Internal(dmc, key, cellIS, 0.0, 0.0, ones, NULL, ones, locmass, NULL)); 92879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 92889566063dSJacob Faibussowitsch PetscCall(VecSet(*mass, 0.0)); 92899566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dmc, locmass, ADD_VALUES, *mass)); 92909566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dmc, locmass, ADD_VALUES, *mass)); 92919566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmc, &ones)); 92929566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmc, &locmass)); 92939566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmc)); 9294b4937a87SMatthew G. Knepley PetscFunctionReturn(0); 9295b4937a87SMatthew G. Knepley } 9296b4937a87SMatthew G. Knepley 9297bd041c0cSMatthew G. Knepley PetscErrorCode DMCreateMassMatrix_Plex(DM dmCoarse, DM dmFine, Mat *mass) 9298bd041c0cSMatthew G. Knepley { 9299bd041c0cSMatthew G. Knepley PetscSection gsc, gsf; 9300bd041c0cSMatthew G. Knepley PetscInt m, n; 9301bd041c0cSMatthew G. Knepley void *ctx; 9302bd041c0cSMatthew G. Knepley DM cdm; 9303bd041c0cSMatthew G. Knepley PetscBool regular; 9304bd041c0cSMatthew G. Knepley 9305bd041c0cSMatthew G. Knepley PetscFunctionBegin; 93063e9753d6SMatthew G. Knepley if (dmFine == dmCoarse) { 93073e9753d6SMatthew G. Knepley DM dmc; 93083e9753d6SMatthew G. Knepley PetscDS ds; 9309b4937a87SMatthew G. Knepley PetscWeakForm wf; 93103e9753d6SMatthew G. Knepley Vec u; 93113e9753d6SMatthew G. Knepley IS cellIS; 931206ad1575SMatthew G. Knepley PetscFormKey key; 93133e9753d6SMatthew G. Knepley PetscInt depth; 93143e9753d6SMatthew G. Knepley 93159566063dSJacob Faibussowitsch PetscCall(DMClone(dmFine, &dmc)); 93169566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dmFine, dmc)); 93179566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &ds)); 93189566063dSJacob Faibussowitsch PetscCall(PetscDSGetWeakForm(ds, &wf)); 93199566063dSJacob Faibussowitsch PetscCall(PetscWeakFormClear(wf)); 93209566063dSJacob Faibussowitsch PetscCall(PetscDSSetJacobian(ds, 0, 0, g0_identity_private, NULL, NULL, NULL)); 93219566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(dmc, mass)); 93229566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmc, &u)); 93239566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dmc, &depth)); 93249566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(dmc, "depth", depth, &cellIS)); 93259566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*mass)); 93266528b96dSMatthew G. Knepley key.label = NULL; 93276528b96dSMatthew G. Knepley key.value = 0; 93286528b96dSMatthew G. Knepley key.field = 0; 932906ad1575SMatthew G. Knepley key.part = 0; 93309566063dSJacob Faibussowitsch PetscCall(DMPlexComputeJacobian_Internal(dmc, key, cellIS, 0.0, 0.0, u, NULL, *mass, *mass, NULL)); 93319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 93329566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmc, &u)); 93339566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmc)); 93343e9753d6SMatthew G. Knepley } else { 93359566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 93369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &m)); 93379566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 93389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &n)); 9339bd041c0cSMatthew G. Knepley 93409566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject) dmCoarse), mass)); 93419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mass, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 93429566063dSJacob Faibussowitsch PetscCall(MatSetType(*mass, dmCoarse->mattype)); 93439566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dmFine, &ctx)); 9344bd041c0cSMatthew G. Knepley 93459566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 93469566063dSJacob Faibussowitsch PetscCall(DMPlexGetRegularRefinement(dmFine, ®ular)); 93479566063dSJacob Faibussowitsch if (regular && cdm == dmCoarse) PetscCall(DMPlexComputeMassMatrixNested(dmCoarse, dmFine, *mass, ctx)); 93489566063dSJacob Faibussowitsch else PetscCall(DMPlexComputeMassMatrixGeneral(dmCoarse, dmFine, *mass, ctx)); 93493e9753d6SMatthew G. Knepley } 93509566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*mass, NULL, "-mass_mat_view")); 9351bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 9352bd041c0cSMatthew G. Knepley } 9353bd041c0cSMatthew G. Knepley 93540aef6b92SMatthew G. Knepley /*@ 93550aef6b92SMatthew G. Knepley DMPlexGetRegularRefinement - Get the flag indicating that this mesh was obtained by regular refinement from its coarse mesh 93560aef6b92SMatthew G. Knepley 93570aef6b92SMatthew G. Knepley Input Parameter: 93580aef6b92SMatthew G. Knepley . dm - The DMPlex object 93590aef6b92SMatthew G. Knepley 93600aef6b92SMatthew G. Knepley Output Parameter: 93610aef6b92SMatthew G. Knepley . regular - The flag 93620aef6b92SMatthew G. Knepley 93630aef6b92SMatthew G. Knepley Level: intermediate 93640aef6b92SMatthew G. Knepley 9365db781477SPatrick Sanan .seealso: `DMPlexSetRegularRefinement()` 93660aef6b92SMatthew G. Knepley @*/ 93670aef6b92SMatthew G. Knepley PetscErrorCode DMPlexGetRegularRefinement(DM dm, PetscBool *regular) 93680aef6b92SMatthew G. Knepley { 93690aef6b92SMatthew G. Knepley PetscFunctionBegin; 93700aef6b92SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9371dadcf809SJacob Faibussowitsch PetscValidBoolPointer(regular, 2); 93720aef6b92SMatthew G. Knepley *regular = ((DM_Plex *) dm->data)->regularRefinement; 93730aef6b92SMatthew G. Knepley PetscFunctionReturn(0); 93740aef6b92SMatthew G. Knepley } 93750aef6b92SMatthew G. Knepley 93760aef6b92SMatthew G. Knepley /*@ 93770aef6b92SMatthew G. Knepley DMPlexSetRegularRefinement - Set the flag indicating that this mesh was obtained by regular refinement from its coarse mesh 93780aef6b92SMatthew G. Knepley 93790aef6b92SMatthew G. Knepley Input Parameters: 93800aef6b92SMatthew G. Knepley + dm - The DMPlex object 93810aef6b92SMatthew G. Knepley - regular - The flag 93820aef6b92SMatthew G. Knepley 93830aef6b92SMatthew G. Knepley Level: intermediate 93840aef6b92SMatthew G. Knepley 9385db781477SPatrick Sanan .seealso: `DMPlexGetRegularRefinement()` 93860aef6b92SMatthew G. Knepley @*/ 93870aef6b92SMatthew G. Knepley PetscErrorCode DMPlexSetRegularRefinement(DM dm, PetscBool regular) 93880aef6b92SMatthew G. Knepley { 93890aef6b92SMatthew G. Knepley PetscFunctionBegin; 93900aef6b92SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 93910aef6b92SMatthew G. Knepley ((DM_Plex *) dm->data)->regularRefinement = regular; 93920aef6b92SMatthew G. Knepley PetscFunctionReturn(0); 93930aef6b92SMatthew G. Knepley } 93940aef6b92SMatthew G. Knepley 9395f7c74593SToby Isaac /* anchors */ 9396a68b90caSToby Isaac /*@ 9397f7c74593SToby Isaac DMPlexGetAnchors - Get the layout of the anchor (point-to-point) constraints. Typically, the user will not have to 9398ebdb1bfaSJed Brown call DMPlexGetAnchors() directly: if there are anchors, then DMPlexGetAnchors() is called during DMGetDefaultConstraints(). 9399a68b90caSToby Isaac 9400e228b242SToby Isaac not collective 9401a68b90caSToby Isaac 9402f899ff85SJose E. Roman Input Parameter: 9403a68b90caSToby Isaac . dm - The DMPlex object 9404a68b90caSToby Isaac 9405a68b90caSToby Isaac Output Parameters: 9406a68b90caSToby Isaac + anchorSection - If not NULL, set to the section describing which points anchor the constrained points. 9407a68b90caSToby Isaac - anchorIS - If not NULL, set to the list of anchors indexed by anchorSection 9408a68b90caSToby Isaac 9409a68b90caSToby Isaac Level: intermediate 9410a68b90caSToby Isaac 9411db781477SPatrick Sanan .seealso: `DMPlexSetAnchors()`, `DMGetDefaultConstraints()`, `DMSetDefaultConstraints()` 9412a68b90caSToby Isaac @*/ 9413a17985deSToby Isaac PetscErrorCode DMPlexGetAnchors(DM dm, PetscSection *anchorSection, IS *anchorIS) 9414a68b90caSToby Isaac { 9415a68b90caSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 9416a68b90caSToby Isaac 9417a68b90caSToby Isaac PetscFunctionBegin; 9418a68b90caSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 94199566063dSJacob Faibussowitsch if (!plex->anchorSection && !plex->anchorIS && plex->createanchors) PetscCall((*plex->createanchors)(dm)); 9420a68b90caSToby Isaac if (anchorSection) *anchorSection = plex->anchorSection; 9421a68b90caSToby Isaac if (anchorIS) *anchorIS = plex->anchorIS; 9422a68b90caSToby Isaac PetscFunctionReturn(0); 9423a68b90caSToby Isaac } 9424a68b90caSToby Isaac 9425a68b90caSToby Isaac /*@ 9426f7c74593SToby Isaac DMPlexSetAnchors - Set the layout of the local anchor (point-to-point) constraints. Unlike boundary conditions, 9427f7c74593SToby Isaac when a point's degrees of freedom in a section are constrained to an outside value, the anchor constraints set a 9428a68b90caSToby Isaac point's degrees of freedom to be a linear combination of other points' degrees of freedom. 9429a68b90caSToby Isaac 9430a17985deSToby Isaac After specifying the layout of constraints with DMPlexSetAnchors(), one specifies the constraints by calling 9431ebdb1bfaSJed Brown DMGetDefaultConstraints() and filling in the entries in the constraint matrix. 9432a68b90caSToby Isaac 9433e228b242SToby Isaac collective on dm 9434a68b90caSToby Isaac 9435a68b90caSToby Isaac Input Parameters: 9436a68b90caSToby Isaac + dm - The DMPlex object 9437e228b242SToby Isaac . anchorSection - The section that describes the mapping from constrained points to the anchor points listed in anchorIS. Must have a local communicator (PETSC_COMM_SELF or derivative). 9438e228b242SToby Isaac - anchorIS - The list of all anchor points. Must have a local communicator (PETSC_COMM_SELF or derivative). 9439a68b90caSToby Isaac 9440a68b90caSToby Isaac The reference counts of anchorSection and anchorIS are incremented. 9441a68b90caSToby Isaac 9442a68b90caSToby Isaac Level: intermediate 9443a68b90caSToby Isaac 9444db781477SPatrick Sanan .seealso: `DMPlexGetAnchors()`, `DMGetDefaultConstraints()`, `DMSetDefaultConstraints()` 9445a68b90caSToby Isaac @*/ 9446a17985deSToby Isaac PetscErrorCode DMPlexSetAnchors(DM dm, PetscSection anchorSection, IS anchorIS) 9447a68b90caSToby Isaac { 9448a68b90caSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 9449e228b242SToby Isaac PetscMPIInt result; 9450a68b90caSToby Isaac 9451a68b90caSToby Isaac PetscFunctionBegin; 9452a68b90caSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9453e228b242SToby Isaac if (anchorSection) { 9454e228b242SToby Isaac PetscValidHeaderSpecific(anchorSection,PETSC_SECTION_CLASSID,2); 94559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF,PetscObjectComm((PetscObject)anchorSection),&result)); 94561dca8a05SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"anchor section must have local communicator"); 9457e228b242SToby Isaac } 9458e228b242SToby Isaac if (anchorIS) { 9459e228b242SToby Isaac PetscValidHeaderSpecific(anchorIS,IS_CLASSID,3); 94609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF,PetscObjectComm((PetscObject)anchorIS),&result)); 94611dca8a05SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"anchor IS must have local communicator"); 9462e228b242SToby Isaac } 9463a68b90caSToby Isaac 94649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)anchorSection)); 94659566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&plex->anchorSection)); 9466a68b90caSToby Isaac plex->anchorSection = anchorSection; 9467a68b90caSToby Isaac 94689566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)anchorIS)); 94699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&plex->anchorIS)); 9470a68b90caSToby Isaac plex->anchorIS = anchorIS; 9471a68b90caSToby Isaac 9472cf9c20a2SJed Brown if (PetscUnlikelyDebug(anchorIS && anchorSection)) { 9473a68b90caSToby Isaac PetscInt size, a, pStart, pEnd; 9474a68b90caSToby Isaac const PetscInt *anchors; 9475a68b90caSToby Isaac 94769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(anchorSection,&pStart,&pEnd)); 94779566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(anchorIS,&size)); 94789566063dSJacob Faibussowitsch PetscCall(ISGetIndices(anchorIS,&anchors)); 9479a68b90caSToby Isaac for (a = 0; a < size; a++) { 9480a68b90caSToby Isaac PetscInt p; 9481a68b90caSToby Isaac 9482a68b90caSToby Isaac p = anchors[a]; 9483a68b90caSToby Isaac if (p >= pStart && p < pEnd) { 9484a68b90caSToby Isaac PetscInt dof; 9485a68b90caSToby Isaac 94869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(anchorSection,p,&dof)); 9487a68b90caSToby Isaac if (dof) { 9488a68b90caSToby Isaac 94899566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(anchorIS,&anchors)); 949063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Point %" PetscInt_FMT " cannot be constrained and an anchor",p); 9491a68b90caSToby Isaac } 9492a68b90caSToby Isaac } 9493a68b90caSToby Isaac } 94949566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(anchorIS,&anchors)); 9495a68b90caSToby Isaac } 9496f7c74593SToby Isaac /* reset the generic constraints */ 94979566063dSJacob Faibussowitsch PetscCall(DMSetDefaultConstraints(dm,NULL,NULL,NULL)); 9498a68b90caSToby Isaac PetscFunctionReturn(0); 9499a68b90caSToby Isaac } 9500a68b90caSToby Isaac 9501f7c74593SToby Isaac static PetscErrorCode DMPlexCreateConstraintSection_Anchors(DM dm, PetscSection section, PetscSection *cSec) 9502a68b90caSToby Isaac { 9503f7c74593SToby Isaac PetscSection anchorSection; 95046995de1eSToby Isaac PetscInt pStart, pEnd, sStart, sEnd, p, dof, numFields, f; 9505a68b90caSToby Isaac 9506a68b90caSToby Isaac PetscFunctionBegin; 9507a68b90caSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 95089566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&anchorSection,NULL)); 95099566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF,cSec)); 95109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section,&numFields)); 95116995de1eSToby Isaac if (numFields) { 9512719ab38cSToby Isaac PetscInt f; 95139566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(*cSec,numFields)); 9514719ab38cSToby Isaac 9515719ab38cSToby Isaac for (f = 0; f < numFields; f++) { 9516719ab38cSToby Isaac PetscInt numComp; 9517719ab38cSToby Isaac 95189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section,f,&numComp)); 95199566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(*cSec,f,numComp)); 9520719ab38cSToby Isaac } 95216995de1eSToby Isaac } 95229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(anchorSection,&pStart,&pEnd)); 95239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section,&sStart,&sEnd)); 95246995de1eSToby Isaac pStart = PetscMax(pStart,sStart); 95256995de1eSToby Isaac pEnd = PetscMin(pEnd,sEnd); 95266995de1eSToby Isaac pEnd = PetscMax(pStart,pEnd); 95279566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(*cSec,pStart,pEnd)); 9528a68b90caSToby Isaac for (p = pStart; p < pEnd; p++) { 95299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(anchorSection,p,&dof)); 9530a68b90caSToby Isaac if (dof) { 95319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,p,&dof)); 95329566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(*cSec,p,dof)); 9533a68b90caSToby Isaac for (f = 0; f < numFields; f++) { 95349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,p,f,&dof)); 95359566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(*cSec,p,f,dof)); 9536a68b90caSToby Isaac } 9537a68b90caSToby Isaac } 9538a68b90caSToby Isaac } 95399566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(*cSec)); 95409566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *cSec, "Constraint Section")); 9541a68b90caSToby Isaac PetscFunctionReturn(0); 9542a68b90caSToby Isaac } 9543a68b90caSToby Isaac 9544f7c74593SToby Isaac static PetscErrorCode DMPlexCreateConstraintMatrix_Anchors(DM dm, PetscSection section, PetscSection cSec, Mat *cMat) 9545a68b90caSToby Isaac { 9546f7c74593SToby Isaac PetscSection aSec; 9547ae65431dSMatthew G. Knepley PetscInt pStart, pEnd, p, sStart, sEnd, dof, aDof, aOff, off, nnz, annz, m, n, q, a, offset, *i, *j; 95480ac89760SToby Isaac const PetscInt *anchors; 95490ac89760SToby Isaac PetscInt numFields, f; 955066ad2231SToby Isaac IS aIS; 9551e19f7ee6SMark Adams MatType mtype; 9552e19f7ee6SMark Adams PetscBool iscuda,iskokkos; 95530ac89760SToby Isaac 95540ac89760SToby Isaac PetscFunctionBegin; 95550ac89760SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 95569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(cSec, &m)); 95579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 95589566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,cMat)); 95599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*cMat,m,n,m,n)); 95609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(dm->mattype,MATSEQAIJCUSPARSE,&iscuda)); 95619566063dSJacob Faibussowitsch if (!iscuda) PetscCall(PetscStrcmp(dm->mattype,MATMPIAIJCUSPARSE,&iscuda)); 95629566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(dm->mattype,MATSEQAIJKOKKOS,&iskokkos)); 95639566063dSJacob Faibussowitsch if (!iskokkos) PetscCall(PetscStrcmp(dm->mattype,MATMPIAIJKOKKOS,&iskokkos)); 9564e19f7ee6SMark Adams if (iscuda) mtype = MATSEQAIJCUSPARSE; 9565e19f7ee6SMark Adams else if (iskokkos) mtype = MATSEQAIJKOKKOS; 9566e19f7ee6SMark Adams else mtype = MATSEQAIJ; 95679566063dSJacob Faibussowitsch PetscCall(MatSetType(*cMat,mtype)); 95689566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS)); 95699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS,&anchors)); 95706995de1eSToby Isaac /* cSec will be a subset of aSec and section */ 95719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec,&pStart,&pEnd)); 95729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section,&sStart,&sEnd)); 95739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m+1,&i)); 95740ac89760SToby Isaac i[0] = 0; 95759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section,&numFields)); 95760ac89760SToby Isaac for (p = pStart; p < pEnd; p++) { 9577f19733c5SToby Isaac PetscInt rDof, rOff, r; 9578f19733c5SToby Isaac 95799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&rDof)); 9580f19733c5SToby Isaac if (!rDof) continue; 95819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&rOff)); 95820ac89760SToby Isaac if (numFields) { 95830ac89760SToby Isaac for (f = 0; f < numFields; f++) { 95840ac89760SToby Isaac annz = 0; 9585f19733c5SToby Isaac for (r = 0; r < rDof; r++) { 9586f19733c5SToby Isaac a = anchors[rOff + r]; 9587ae65431dSMatthew G. Knepley if (a < sStart || a >= sEnd) continue; 95889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,a,f,&aDof)); 95890ac89760SToby Isaac annz += aDof; 95900ac89760SToby Isaac } 95919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(cSec,p,f,&dof)); 95929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(cSec,p,f,&off)); 95930ac89760SToby Isaac for (q = 0; q < dof; q++) { 95940ac89760SToby Isaac i[off + q + 1] = i[off + q] + annz; 95950ac89760SToby Isaac } 95960ac89760SToby Isaac } 95972f7452b8SBarry Smith } else { 95980ac89760SToby Isaac annz = 0; 95999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec,p,&dof)); 96000ac89760SToby Isaac for (q = 0; q < dof; q++) { 9601ae65431dSMatthew G. Knepley a = anchors[rOff + q]; 9602ae65431dSMatthew G. Knepley if (a < sStart || a >= sEnd) continue; 96039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,a,&aDof)); 96040ac89760SToby Isaac annz += aDof; 96050ac89760SToby Isaac } 96069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec,p,&dof)); 96079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cSec,p,&off)); 96080ac89760SToby Isaac for (q = 0; q < dof; q++) { 96090ac89760SToby Isaac i[off + q + 1] = i[off + q] + annz; 96100ac89760SToby Isaac } 96110ac89760SToby Isaac } 96120ac89760SToby Isaac } 96130ac89760SToby Isaac nnz = i[m]; 96149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nnz,&j)); 96150ac89760SToby Isaac offset = 0; 96160ac89760SToby Isaac for (p = pStart; p < pEnd; p++) { 96170ac89760SToby Isaac if (numFields) { 96180ac89760SToby Isaac for (f = 0; f < numFields; f++) { 96199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(cSec,p,f,&dof)); 96200ac89760SToby Isaac for (q = 0; q < dof; q++) { 96210ac89760SToby Isaac PetscInt rDof, rOff, r; 96229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&rDof)); 96239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&rOff)); 96240ac89760SToby Isaac for (r = 0; r < rDof; r++) { 96250ac89760SToby Isaac PetscInt s; 96260ac89760SToby Isaac 96270ac89760SToby Isaac a = anchors[rOff + r]; 9628ae65431dSMatthew G. Knepley if (a < sStart || a >= sEnd) continue; 96299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,a,f,&aDof)); 96309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(section,a,f,&aOff)); 96310ac89760SToby Isaac for (s = 0; s < aDof; s++) { 96320ac89760SToby Isaac j[offset++] = aOff + s; 96330ac89760SToby Isaac } 96340ac89760SToby Isaac } 96350ac89760SToby Isaac } 96360ac89760SToby Isaac } 96372f7452b8SBarry Smith } else { 96389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec,p,&dof)); 96390ac89760SToby Isaac for (q = 0; q < dof; q++) { 96400ac89760SToby Isaac PetscInt rDof, rOff, r; 96419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&rDof)); 96429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&rOff)); 96430ac89760SToby Isaac for (r = 0; r < rDof; r++) { 96440ac89760SToby Isaac PetscInt s; 96450ac89760SToby Isaac 96460ac89760SToby Isaac a = anchors[rOff + r]; 9647ae65431dSMatthew G. Knepley if (a < sStart || a >= sEnd) continue; 96489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,a,&aDof)); 96499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section,a,&aOff)); 96500ac89760SToby Isaac for (s = 0; s < aDof; s++) { 96510ac89760SToby Isaac j[offset++] = aOff + s; 96520ac89760SToby Isaac } 96530ac89760SToby Isaac } 96540ac89760SToby Isaac } 96550ac89760SToby Isaac } 96560ac89760SToby Isaac } 96579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocationCSR(*cMat,i,j,NULL)); 96589566063dSJacob Faibussowitsch PetscCall(PetscFree(i)); 96599566063dSJacob Faibussowitsch PetscCall(PetscFree(j)); 96609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS,&anchors)); 96610ac89760SToby Isaac PetscFunctionReturn(0); 96620ac89760SToby Isaac } 96630ac89760SToby Isaac 966466ad2231SToby Isaac PetscErrorCode DMCreateDefaultConstraints_Plex(DM dm) 966566ad2231SToby Isaac { 9666f7c74593SToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 9667f7c74593SToby Isaac PetscSection anchorSection, section, cSec; 966866ad2231SToby Isaac Mat cMat; 966966ad2231SToby Isaac 967066ad2231SToby Isaac PetscFunctionBegin; 967166ad2231SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 96729566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&anchorSection,NULL)); 967366ad2231SToby Isaac if (anchorSection) { 967444a7f3ddSMatthew G. Knepley PetscInt Nf; 9675e228b242SToby Isaac 96769566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm,§ion)); 96779566063dSJacob Faibussowitsch PetscCall(DMPlexCreateConstraintSection_Anchors(dm,section,&cSec)); 96789566063dSJacob Faibussowitsch PetscCall(DMPlexCreateConstraintMatrix_Anchors(dm,section,cSec,&cMat)); 96799566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm,&Nf)); 96809566063dSJacob Faibussowitsch if (Nf && plex->computeanchormatrix) PetscCall((*plex->computeanchormatrix)(dm,section,cSec,cMat)); 96819566063dSJacob Faibussowitsch PetscCall(DMSetDefaultConstraints(dm,cSec,cMat,NULL)); 96829566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&cSec)); 96839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&cMat)); 968466ad2231SToby Isaac } 968566ad2231SToby Isaac PetscFunctionReturn(0); 968666ad2231SToby Isaac } 9687a93c429eSMatthew G. Knepley 9688a93c429eSMatthew G. Knepley PetscErrorCode DMCreateSubDomainDM_Plex(DM dm, DMLabel label, PetscInt value, IS *is, DM *subdm) 9689a93c429eSMatthew G. Knepley { 9690a93c429eSMatthew G. Knepley IS subis; 9691a93c429eSMatthew G. Knepley PetscSection section, subsection; 9692a93c429eSMatthew G. Knepley 9693a93c429eSMatthew G. Knepley PetscFunctionBegin; 96949566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 969528b400f6SJacob Faibussowitsch PetscCheck(section,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Must set default section for DM before splitting subdomain"); 969628b400f6SJacob Faibussowitsch PetscCheck(subdm,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Must set output subDM for splitting subdomain"); 9697a93c429eSMatthew G. Knepley /* Create subdomain */ 96989566063dSJacob Faibussowitsch PetscCall(DMPlexFilter(dm, label, value, subdm)); 9699a93c429eSMatthew G. Knepley /* Create submodel */ 97009566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(*subdm, &subis)); 97019566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateSubmeshSection(section, subis, &subsection)); 97029566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(*subdm, subsection)); 97039566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&subsection)); 97049566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *subdm)); 9705a93c429eSMatthew G. Knepley /* Create map from submodel to global model */ 9706a93c429eSMatthew G. Knepley if (is) { 9707a93c429eSMatthew G. Knepley PetscSection sectionGlobal, subsectionGlobal; 9708a93c429eSMatthew G. Knepley IS spIS; 9709a93c429eSMatthew G. Knepley const PetscInt *spmap; 9710a93c429eSMatthew G. Knepley PetscInt *subIndices; 9711a93c429eSMatthew G. Knepley PetscInt subSize = 0, subOff = 0, pStart, pEnd, p; 9712a93c429eSMatthew G. Knepley PetscInt Nf, f, bs = -1, bsLocal[2], bsMinMax[2]; 9713a93c429eSMatthew G. Knepley 97149566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(*subdm, &spIS)); 97159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(spIS, &spmap)); 97169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 97179566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 97189566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(*subdm, &subsectionGlobal)); 97199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(subsection, &pStart, &pEnd)); 9720a93c429eSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 9721a93c429eSMatthew G. Knepley PetscInt gdof, pSubSize = 0; 9722a93c429eSMatthew G. Knepley 97239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 9724a93c429eSMatthew G. Knepley if (gdof > 0) { 9725a93c429eSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 9726a93c429eSMatthew G. Knepley PetscInt fdof, fcdof; 9727a93c429eSMatthew G. Knepley 97289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(subsection, p, f, &fdof)); 97299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(subsection, p, f, &fcdof)); 9730a93c429eSMatthew G. Knepley pSubSize += fdof-fcdof; 9731a93c429eSMatthew G. Knepley } 9732a93c429eSMatthew G. Knepley subSize += pSubSize; 9733a93c429eSMatthew G. Knepley if (pSubSize) { 9734a93c429eSMatthew G. Knepley if (bs < 0) { 9735a93c429eSMatthew G. Knepley bs = pSubSize; 9736a93c429eSMatthew G. Knepley } else if (bs != pSubSize) { 9737a93c429eSMatthew G. Knepley /* Layout does not admit a pointwise block size */ 9738a93c429eSMatthew G. Knepley bs = 1; 9739a93c429eSMatthew G. Knepley } 9740a93c429eSMatthew G. Knepley } 9741a93c429eSMatthew G. Knepley } 9742a93c429eSMatthew G. Knepley } 9743a93c429eSMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 9744a93c429eSMatthew G. Knepley bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; bsLocal[1] = bs; 97459566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject) dm), bsLocal, bsMinMax)); 9746a93c429eSMatthew G. Knepley if (bsMinMax[0] != bsMinMax[1]) {bs = 1;} 9747a93c429eSMatthew G. Knepley else {bs = bsMinMax[0];} 97489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(subSize, &subIndices)); 9749a93c429eSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 9750a93c429eSMatthew G. Knepley PetscInt gdof, goff; 9751a93c429eSMatthew G. Knepley 97529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subsectionGlobal, p, &gdof)); 9753a93c429eSMatthew G. Knepley if (gdof > 0) { 9754a93c429eSMatthew G. Knepley const PetscInt point = spmap[p]; 9755a93c429eSMatthew G. Knepley 97569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, point, &goff)); 9757a93c429eSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 9758a93c429eSMatthew G. Knepley PetscInt fdof, fcdof, fc, f2, poff = 0; 9759a93c429eSMatthew G. Knepley 9760a93c429eSMatthew G. Knepley /* Can get rid of this loop by storing field information in the global section */ 9761a93c429eSMatthew G. Knepley for (f2 = 0; f2 < f; ++f2) { 97629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f2, &fdof)); 97639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f2, &fcdof)); 9764a93c429eSMatthew G. Knepley poff += fdof-fcdof; 9765a93c429eSMatthew G. Knepley } 97669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 97679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 9768a93c429eSMatthew G. Knepley for (fc = 0; fc < fdof-fcdof; ++fc, ++subOff) { 9769a93c429eSMatthew G. Knepley subIndices[subOff] = goff+poff+fc; 9770a93c429eSMatthew G. Knepley } 9771a93c429eSMatthew G. Knepley } 9772a93c429eSMatthew G. Knepley } 9773a93c429eSMatthew G. Knepley } 97749566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(spIS, &spmap)); 97759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), subSize, subIndices, PETSC_OWN_POINTER, is)); 9776a93c429eSMatthew G. Knepley if (bs > 1) { 9777a93c429eSMatthew G. Knepley /* We need to check that the block size does not come from non-contiguous fields */ 9778a93c429eSMatthew G. Knepley PetscInt i, j, set = 1; 9779a93c429eSMatthew G. Knepley for (i = 0; i < subSize; i += bs) { 9780a93c429eSMatthew G. Knepley for (j = 0; j < bs; ++j) { 9781a93c429eSMatthew G. Knepley if (subIndices[i+j] != subIndices[i]+j) {set = 0; break;} 9782a93c429eSMatthew G. Knepley } 9783a93c429eSMatthew G. Knepley } 97849566063dSJacob Faibussowitsch if (set) PetscCall(ISSetBlockSize(*is, bs)); 9785a93c429eSMatthew G. Knepley } 9786a93c429eSMatthew G. Knepley /* Attach nullspace */ 9787a93c429eSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 9788a93c429eSMatthew G. Knepley (*subdm)->nullspaceConstructors[f] = dm->nullspaceConstructors[f]; 9789a93c429eSMatthew G. Knepley if ((*subdm)->nullspaceConstructors[f]) break; 9790a93c429eSMatthew G. Knepley } 9791a93c429eSMatthew G. Knepley if (f < Nf) { 9792a93c429eSMatthew G. Knepley MatNullSpace nullSpace; 97939566063dSJacob Faibussowitsch PetscCall((*(*subdm)->nullspaceConstructors[f])(*subdm, f, f, &nullSpace)); 97946823f3c5SBlaise Bourdin 97959566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) *is, "nullspace", (PetscObject) nullSpace)); 97969566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 9797a93c429eSMatthew G. Knepley } 9798a93c429eSMatthew G. Knepley } 9799a93c429eSMatthew G. Knepley PetscFunctionReturn(0); 9800a93c429eSMatthew G. Knepley } 9801c0f0dcc3SMatthew G. Knepley 9802c0f0dcc3SMatthew G. Knepley /*@ 9803c0f0dcc3SMatthew G. Knepley DMPlexMonitorThroughput - Report the cell throughput of FE integration 9804c0f0dcc3SMatthew G. Knepley 9805c0f0dcc3SMatthew G. Knepley Input Parameter: 9806c0f0dcc3SMatthew G. Knepley - dm - The DM 9807c0f0dcc3SMatthew G. Knepley 9808c0f0dcc3SMatthew G. Knepley Level: developer 9809c0f0dcc3SMatthew G. Knepley 9810c0f0dcc3SMatthew G. Knepley Options Database Keys: 9811c0f0dcc3SMatthew G. Knepley . -dm_plex_monitor_throughput - Activate the monitor 9812c0f0dcc3SMatthew G. Knepley 9813db781477SPatrick Sanan .seealso: `DMSetFromOptions()`, `DMPlexCreate()` 9814c0f0dcc3SMatthew G. Knepley @*/ 9815c0f0dcc3SMatthew G. Knepley PetscErrorCode DMPlexMonitorThroughput(DM dm, void *dummy) 9816c0f0dcc3SMatthew G. Knepley { 9817e5ed2c37SJose E. Roman #if defined(PETSC_USE_LOG) 9818c0f0dcc3SMatthew G. Knepley PetscStageLog stageLog; 9819c0f0dcc3SMatthew G. Knepley PetscLogEvent event; 9820c0f0dcc3SMatthew G. Knepley PetscLogStage stage; 9821c0f0dcc3SMatthew G. Knepley PetscEventPerfInfo eventInfo; 9822c0f0dcc3SMatthew G. Knepley PetscReal cellRate, flopRate; 9823c0f0dcc3SMatthew G. Knepley PetscInt cStart, cEnd, Nf, N; 9824c0f0dcc3SMatthew G. Knepley const char *name; 9825e5ed2c37SJose E. Roman #endif 9826c0f0dcc3SMatthew G. Knepley 9827c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 9828c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9829c0f0dcc3SMatthew G. Knepley #if defined(PETSC_USE_LOG) 98309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) dm, &name)); 98319566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 98329566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 98339566063dSJacob Faibussowitsch PetscCall(PetscLogGetStageLog(&stageLog)); 98349566063dSJacob Faibussowitsch PetscCall(PetscStageLogGetCurrent(stageLog, &stage)); 98359566063dSJacob Faibussowitsch PetscCall(PetscLogEventGetId("DMPlexResidualFE", &event)); 98369566063dSJacob Faibussowitsch PetscCall(PetscLogEventGetPerfInfo(stage, event, &eventInfo)); 9837c0f0dcc3SMatthew G. Knepley N = (cEnd - cStart)*Nf*eventInfo.count; 9838c0f0dcc3SMatthew G. Knepley flopRate = eventInfo.flops/eventInfo.time; 9839c0f0dcc3SMatthew G. Knepley cellRate = N/eventInfo.time; 984063a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject) dm), "DM (%s) FE Residual Integration: %" PetscInt_FMT " integrals %d reps\n Cell rate: %.2g/s flop rate: %.2g MF/s\n", name ? name : "unknown", N, eventInfo.count, (double) cellRate, (double) (flopRate/1.e6))); 9841c0f0dcc3SMatthew G. Knepley #else 9842c0f0dcc3SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Plex Throughput Monitor is not supported if logging is turned off. Reconfigure using --with-log."); 9843c0f0dcc3SMatthew G. Knepley #endif 9844c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 9845c0f0dcc3SMatthew G. Knepley } 9846