1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/isimpl.h> 3e5c6e791SKarl Rupp #include <petsc/private/vecimpl.h> 48135c375SStefano Zampini #include <petsc/private/glvisvecimpl.h> 50c312b8eSJed Brown #include <petscsf.h> 6e228b242SToby Isaac #include <petscds.h> 7e412dcbdSMatthew G. Knepley #include <petscdraw.h> 8f19dbd58SToby Isaac #include <petscdmfield.h> 9012bc364SMatthew G. Knepley #include <petscdmplextransform.h> 10552f7358SJed Brown 11552f7358SJed Brown /* Logging support */ 1202f7d72cSksagiyam PetscLogEvent DMPLEX_Interpolate, DMPLEX_Partition, DMPLEX_Distribute, DMPLEX_DistributeCones, DMPLEX_DistributeLabels, DMPLEX_DistributeSF, DMPLEX_DistributeOverlap, DMPLEX_DistributeField, DMPLEX_DistributeData, DMPLEX_Migrate, DMPLEX_InterpolateSF, DMPLEX_GlobalToNaturalBegin, DMPLEX_GlobalToNaturalEnd, DMPLEX_NaturalToGlobalBegin, DMPLEX_NaturalToGlobalEnd, DMPLEX_Stratify, DMPLEX_Symmetrize, DMPLEX_Preallocate, DMPLEX_ResidualFEM, DMPLEX_JacobianFEM, DMPLEX_InterpolatorFEM, DMPLEX_InjectorFEM, DMPLEX_IntegralFEM, DMPLEX_CreateGmsh, DMPLEX_RebalanceSharedPoints, DMPLEX_PartSelf, DMPLEX_PartLabelInvert, DMPLEX_PartLabelCreateSF, DMPLEX_PartStratSF, DMPLEX_CreatePointSF,DMPLEX_LocatePoints,DMPLEX_TopologyView,DMPLEX_LabelsView,DMPLEX_CoordinatesView,DMPLEX_SectionView,DMPLEX_GlobalVectorView,DMPLEX_LocalVectorView,DMPLEX_TopologyLoad,DMPLEX_LabelsLoad,DMPLEX_CoordinatesLoad,DMPLEX_SectionLoad,DMPLEX_GlobalVectorLoad,DMPLEX_LocalVectorLoad; 13552f7358SJed Brown 145a576424SJed Brown PETSC_EXTERN PetscErrorCode VecView_MPI(Vec, PetscViewer); 15552f7358SJed Brown 16e5337592SStefano Zampini /*@ 179318fe57SMatthew G. Knepley DMPlexIsSimplex - Is the first cell in this mesh a simplex? 189318fe57SMatthew G. Knepley 199318fe57SMatthew G. Knepley Input Parameter: 209318fe57SMatthew G. Knepley . dm - The DMPlex object 219318fe57SMatthew G. Knepley 229318fe57SMatthew G. Knepley Output Parameter: 239318fe57SMatthew G. Knepley . simplex - Flag checking for a simplex 249318fe57SMatthew G. Knepley 259318fe57SMatthew G. Knepley Note: This just gives the first range of cells found. If the mesh has several cell types, it will only give the first. 269318fe57SMatthew G. Knepley If the mesh has no cells, this returns PETSC_FALSE. 279318fe57SMatthew G. Knepley 289318fe57SMatthew G. Knepley Level: intermediate 299318fe57SMatthew G. Knepley 30db781477SPatrick Sanan .seealso `DMPlexGetSimplexOrBoxCells()`, `DMPlexGetCellType()`, `DMPlexGetHeightStratum()`, `DMPolytopeTypeGetNumVertices()` 319318fe57SMatthew G. Knepley @*/ 329318fe57SMatthew G. Knepley PetscErrorCode DMPlexIsSimplex(DM dm, PetscBool *simplex) 339318fe57SMatthew G. Knepley { 349318fe57SMatthew G. Knepley DMPolytopeType ct; 359318fe57SMatthew G. Knepley PetscInt cStart, cEnd; 369318fe57SMatthew G. Knepley 379318fe57SMatthew G. Knepley PetscFunctionBegin; 389566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 399318fe57SMatthew G. Knepley if (cEnd <= cStart) {*simplex = PETSC_FALSE; PetscFunctionReturn(0);} 409566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 419318fe57SMatthew G. Knepley *simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct)+1 ? PETSC_TRUE : PETSC_FALSE; 429318fe57SMatthew G. Knepley PetscFunctionReturn(0); 439318fe57SMatthew G. Knepley } 449318fe57SMatthew G. Knepley 459318fe57SMatthew G. Knepley /*@ 46412e9a14SMatthew G. Knepley DMPlexGetSimplexOrBoxCells - Get the range of cells which are neither prisms nor ghost FV cells 47e5337592SStefano Zampini 48d8d19677SJose E. Roman Input Parameters: 49412e9a14SMatthew G. Knepley + dm - The DMPlex object 50412e9a14SMatthew G. Knepley - height - The cell height in the Plex, 0 is the default 51e5337592SStefano Zampini 52e5337592SStefano Zampini Output Parameters: 53412e9a14SMatthew G. Knepley + cStart - The first "normal" cell 54412e9a14SMatthew G. Knepley - cEnd - The upper bound on "normal"" cells 55e5337592SStefano Zampini 56412e9a14SMatthew G. Knepley Note: This just gives the first range of cells found. If the mesh has several cell types, it will only give the first. 57e5337592SStefano Zampini 58412e9a14SMatthew G. Knepley Level: developer 59e5337592SStefano Zampini 60db781477SPatrick Sanan .seealso `DMPlexConstructGhostCells()`, `DMPlexGetGhostCellStratum()` 61e5337592SStefano Zampini @*/ 62412e9a14SMatthew G. Knepley PetscErrorCode DMPlexGetSimplexOrBoxCells(DM dm, PetscInt height, PetscInt *cStart, PetscInt *cEnd) 63e5337592SStefano Zampini { 64412e9a14SMatthew G. Knepley DMPolytopeType ct = DM_POLYTOPE_UNKNOWN; 65412e9a14SMatthew G. Knepley PetscInt cS, cE, c; 66e5337592SStefano Zampini 67e5337592SStefano Zampini PetscFunctionBegin; 689566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, PetscMax(height, 0), &cS, &cE)); 69412e9a14SMatthew G. Knepley for (c = cS; c < cE; ++c) { 70412e9a14SMatthew G. Knepley DMPolytopeType cct; 71412e9a14SMatthew G. Knepley 729566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &cct)); 73412e9a14SMatthew G. Knepley if ((PetscInt) cct < 0) break; 74412e9a14SMatthew G. Knepley switch (cct) { 75ba2698f1SMatthew G. Knepley case DM_POLYTOPE_POINT: 76ba2698f1SMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 77ba2698f1SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 78ba2698f1SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 79ba2698f1SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 80ba2698f1SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 81412e9a14SMatthew G. Knepley ct = cct; 82e5337592SStefano Zampini break; 83412e9a14SMatthew G. Knepley default: break; 84e5337592SStefano Zampini } 85412e9a14SMatthew G. Knepley if (ct != DM_POLYTOPE_UNKNOWN) break; 86e5337592SStefano Zampini } 87412e9a14SMatthew G. Knepley if (ct != DM_POLYTOPE_UNKNOWN) { 88412e9a14SMatthew G. Knepley DMLabel ctLabel; 89412e9a14SMatthew G. Knepley 909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, ct, &cS, &cE)); 92e5337592SStefano Zampini } 93412e9a14SMatthew G. Knepley if (cStart) *cStart = cS; 94412e9a14SMatthew G. Knepley if (cEnd) *cEnd = cE; 95e5337592SStefano Zampini PetscFunctionReturn(0); 96e5337592SStefano Zampini } 97e5337592SStefano Zampini 987afe7537SMatthew G. Knepley PetscErrorCode DMPlexGetFieldType_Internal(DM dm, PetscSection section, PetscInt field, PetscInt *sStart, PetscInt *sEnd, PetscViewerVTKFieldType *ft) 997e42fee7SMatthew G. Knepley { 100412e9a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, vStart, vEnd, cStart, cEnd; 101a99a26bcSAdrian Croucher PetscInt vcdof[2] = {0,0}, globalvcdof[2]; 1027e42fee7SMatthew G. Knepley 1037e42fee7SMatthew G. Knepley PetscFunctionBegin; 104e630c359SToby Isaac *ft = PETSC_VTK_INVALID; 1059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 1097e42fee7SMatthew G. Knepley if (field >= 0) { 1109566063dSJacob Faibussowitsch if ((vStart >= pStart) && (vStart < pEnd)) PetscCall(PetscSectionGetFieldDof(section, vStart, field, &vcdof[0])); 1119566063dSJacob Faibussowitsch if ((cStart >= pStart) && (cStart < pEnd)) PetscCall(PetscSectionGetFieldDof(section, cStart, field, &vcdof[1])); 1127e42fee7SMatthew G. Knepley } else { 1139566063dSJacob Faibussowitsch if ((vStart >= pStart) && (vStart < pEnd)) PetscCall(PetscSectionGetDof(section, vStart, &vcdof[0])); 1149566063dSJacob Faibussowitsch if ((cStart >= pStart) && (cStart < pEnd)) PetscCall(PetscSectionGetDof(section, cStart, &vcdof[1])); 1157e42fee7SMatthew G. Knepley } 1169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(vcdof, globalvcdof, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 117a99a26bcSAdrian Croucher if (globalvcdof[0]) { 1187e42fee7SMatthew G. Knepley *sStart = vStart; 1197e42fee7SMatthew G. Knepley *sEnd = vEnd; 120f094498dSMatthew G. Knepley if (globalvcdof[0] == cdim) *ft = PETSC_VTK_POINT_VECTOR_FIELD; 1217e42fee7SMatthew G. Knepley else *ft = PETSC_VTK_POINT_FIELD; 122a99a26bcSAdrian Croucher } else if (globalvcdof[1]) { 1237e42fee7SMatthew G. Knepley *sStart = cStart; 1247e42fee7SMatthew G. Knepley *sEnd = cEnd; 125f094498dSMatthew G. Knepley if (globalvcdof[1] == cdim) *ft = PETSC_VTK_CELL_VECTOR_FIELD; 1267e42fee7SMatthew G. Knepley else *ft = PETSC_VTK_CELL_FIELD; 127e630c359SToby Isaac } else { 128e630c359SToby Isaac if (field >= 0) { 129e630c359SToby Isaac const char *fieldname; 130e630c359SToby Isaac 1319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, field, &fieldname)); 13263a3b9bcSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject) dm, "Could not classify VTK output type of section field %" PetscInt_FMT " \"%s\"\n", field, fieldname)); 133e630c359SToby Isaac } else { 13463a3b9bcSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject) dm, "Could not classify VTK output type of section\n")); 135e630c359SToby Isaac } 136e630c359SToby Isaac } 1377e42fee7SMatthew G. Knepley PetscFunctionReturn(0); 1387e42fee7SMatthew G. Knepley } 1397e42fee7SMatthew G. Knepley 1406913077dSMatthew G. Knepley /*@ 1416913077dSMatthew G. Knepley DMPlexVecView1D - Plot many 1D solutions on the same line graph 1426913077dSMatthew G. Knepley 1436913077dSMatthew G. Knepley Collective on dm 1446913077dSMatthew G. Knepley 1456913077dSMatthew G. Knepley Input Parameters: 1466913077dSMatthew G. Knepley + dm - The DMPlex 1476913077dSMatthew G. Knepley . n - The number of vectors 1486913077dSMatthew G. Knepley . u - The array of local vectors 1496913077dSMatthew G. Knepley - viewer - The Draw viewer 1506913077dSMatthew G. Knepley 1516913077dSMatthew G. Knepley Level: advanced 1526913077dSMatthew G. Knepley 153db781477SPatrick Sanan .seealso: `VecViewFromOptions()`, `VecView()` 1546913077dSMatthew G. Knepley @*/ 1556913077dSMatthew G. Knepley PetscErrorCode DMPlexVecView1D(DM dm, PetscInt n, Vec u[], PetscViewer viewer) 1566913077dSMatthew G. Knepley { 1576913077dSMatthew G. Knepley PetscDS ds; 1586913077dSMatthew G. Knepley PetscDraw draw = NULL; 1596913077dSMatthew G. Knepley PetscDrawLG lg; 1606913077dSMatthew G. Knepley Vec coordinates; 1616913077dSMatthew G. Knepley const PetscScalar *coords, **sol; 1626913077dSMatthew G. Knepley PetscReal *vals; 1636913077dSMatthew G. Knepley PetscInt *Nc; 1646913077dSMatthew G. Knepley PetscInt Nf, f, c, Nl, l, i, vStart, vEnd, v; 1656913077dSMatthew G. Knepley char **names; 1666913077dSMatthew G. Knepley 1676913077dSMatthew G. Knepley PetscFunctionBegin; 1689566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 1699566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 1709566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(ds, &Nl)); 1719566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponents(ds, &Nc)); 1726913077dSMatthew G. Knepley 1739566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 1746913077dSMatthew G. Knepley if (!draw) PetscFunctionReturn(0); 1759566063dSJacob Faibussowitsch PetscCall(PetscDrawLGCreate(draw, n*Nl, &lg)); 1766913077dSMatthew G. Knepley 1779566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n, &sol, n*Nl, &names, n*Nl, &vals)); 1786913077dSMatthew G. Knepley for (i = 0, l = 0; i < n; ++i) { 1796913077dSMatthew G. Knepley const char *vname; 1806913077dSMatthew G. Knepley 1819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) u[i], &vname)); 1826913077dSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1836913077dSMatthew G. Knepley PetscObject disc; 1846913077dSMatthew G. Knepley const char *fname; 1856913077dSMatthew G. Knepley char tmpname[PETSC_MAX_PATH_LEN]; 1866913077dSMatthew G. Knepley 1879566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &disc)); 1886913077dSMatthew G. Knepley /* TODO Create names for components */ 1896913077dSMatthew G. Knepley for (c = 0; c < Nc[f]; ++c, ++l) { 1909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName(disc, &fname)); 1919566063dSJacob Faibussowitsch PetscCall(PetscStrcpy(tmpname, vname)); 1929566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(tmpname, ":", PETSC_MAX_PATH_LEN)); 1939566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(tmpname, fname, PETSC_MAX_PATH_LEN)); 1949566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(tmpname, &names[l])); 1956913077dSMatthew G. Knepley } 1966913077dSMatthew G. Knepley } 1976913077dSMatthew G. Knepley } 1989566063dSJacob Faibussowitsch PetscCall(PetscDrawLGSetLegend(lg, (const char *const *) names)); 1996913077dSMatthew G. Knepley /* Just add P_1 support for now */ 2009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 2019566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 2029566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &coords)); 2039566063dSJacob Faibussowitsch for (i = 0; i < n; ++i) PetscCall(VecGetArrayRead(u[i], &sol[i])); 2046913077dSMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 2056913077dSMatthew G. Knepley PetscScalar *x, *svals; 2066913077dSMatthew G. Knepley 2079566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, v, coords, &x)); 2086913077dSMatthew G. Knepley for (i = 0; i < n; ++i) { 2099566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, v, sol[i], &svals)); 2106913077dSMatthew G. Knepley for (l = 0; l < Nl; ++l) vals[i*Nl + l] = PetscRealPart(svals[l]); 2116913077dSMatthew G. Knepley } 2129566063dSJacob Faibussowitsch PetscCall(PetscDrawLGAddCommonPoint(lg, PetscRealPart(x[0]), vals)); 2136913077dSMatthew G. Knepley } 2149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &coords)); 2159566063dSJacob Faibussowitsch for (i = 0; i < n; ++i) PetscCall(VecRestoreArrayRead(u[i], &sol[i])); 2169566063dSJacob Faibussowitsch for (l = 0; l < n*Nl; ++l) PetscCall(PetscFree(names[l])); 2179566063dSJacob Faibussowitsch PetscCall(PetscFree3(sol, names, vals)); 2186913077dSMatthew G. Knepley 2199566063dSJacob Faibussowitsch PetscCall(PetscDrawLGDraw(lg)); 2209566063dSJacob Faibussowitsch PetscCall(PetscDrawLGDestroy(&lg)); 2216913077dSMatthew G. Knepley PetscFunctionReturn(0); 2226913077dSMatthew G. Knepley } 2236913077dSMatthew G. Knepley 2246913077dSMatthew G. Knepley static PetscErrorCode VecView_Plex_Local_Draw_1D(Vec u, PetscViewer viewer) 2256913077dSMatthew G. Knepley { 2266913077dSMatthew G. Knepley DM dm; 2276913077dSMatthew G. Knepley 2286913077dSMatthew G. Knepley PetscFunctionBegin; 2299566063dSJacob Faibussowitsch PetscCall(VecGetDM(u, &dm)); 2309566063dSJacob Faibussowitsch PetscCall(DMPlexVecView1D(dm, 1, &u, viewer)); 2316913077dSMatthew G. Knepley PetscFunctionReturn(0); 2326913077dSMatthew G. Knepley } 2336913077dSMatthew G. Knepley 2346913077dSMatthew G. Knepley static PetscErrorCode VecView_Plex_Local_Draw_2D(Vec v, PetscViewer viewer) 235e412dcbdSMatthew G. Knepley { 236e412dcbdSMatthew G. Knepley DM dm; 237d1df6f1dSMatthew G. Knepley PetscSection s; 238e412dcbdSMatthew G. Knepley PetscDraw draw, popup; 239e412dcbdSMatthew G. Knepley DM cdm; 240e412dcbdSMatthew G. Knepley PetscSection coordSection; 241e412dcbdSMatthew G. Knepley Vec coordinates; 242e412dcbdSMatthew G. Knepley const PetscScalar *coords, *array; 243e412dcbdSMatthew G. Knepley PetscReal bound[4] = {PETSC_MAX_REAL, PETSC_MAX_REAL, PETSC_MIN_REAL, PETSC_MIN_REAL}; 244339e3443SMatthew G. Knepley PetscReal vbound[2], time; 2456913077dSMatthew G. Knepley PetscBool flg; 246d1df6f1dSMatthew G. Knepley PetscInt dim, Nf, f, Nc, comp, vStart, vEnd, cStart, cEnd, c, N, level, step, w = 0; 247e412dcbdSMatthew G. Knepley const char *name; 248339e3443SMatthew G. Knepley char title[PETSC_MAX_PATH_LEN]; 249e412dcbdSMatthew G. Knepley 250e412dcbdSMatthew G. Knepley PetscFunctionBegin; 2519566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 2529566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 2539566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 2549566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 2559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 2569566063dSJacob Faibussowitsch PetscCall(DMGetCoarsenLevel(dm, &level)); 2579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &cdm)); 2589566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(cdm, &coordSection)); 2599566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 2609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 2619566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 262e412dcbdSMatthew G. Knepley 2639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 2649566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, &step, &time)); 265e412dcbdSMatthew G. Knepley 2669566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(coordinates, &N)); 2679566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &coords)); 268e412dcbdSMatthew G. Knepley for (c = 0; c < N; c += dim) { 2690c81f2a8SMatthew G. Knepley bound[0] = PetscMin(bound[0], PetscRealPart(coords[c])); bound[2] = PetscMax(bound[2], PetscRealPart(coords[c])); 2700c81f2a8SMatthew G. Knepley bound[1] = PetscMin(bound[1], PetscRealPart(coords[c+1])); bound[3] = PetscMax(bound[3], PetscRealPart(coords[c+1])); 271e412dcbdSMatthew G. Knepley } 2729566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &coords)); 2739566063dSJacob Faibussowitsch PetscCall(PetscDrawClear(draw)); 274e412dcbdSMatthew G. Knepley 275d1df6f1dSMatthew G. Knepley /* Could implement something like DMDASelectFields() */ 276d1df6f1dSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 277d1df6f1dSMatthew G. Knepley DM fdm = dm; 278d1df6f1dSMatthew G. Knepley Vec fv = v; 279d1df6f1dSMatthew G. Knepley IS fis; 280d1df6f1dSMatthew G. Knepley char prefix[PETSC_MAX_PATH_LEN]; 281d1df6f1dSMatthew G. Knepley const char *fname; 282d1df6f1dSMatthew G. Knepley 2839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(s, f, &fname)); 285d1df6f1dSMatthew G. Knepley 2869566063dSJacob Faibussowitsch if (v->hdr.prefix) PetscCall(PetscStrncpy(prefix, v->hdr.prefix,sizeof(prefix))); 287d1df6f1dSMatthew G. Knepley else {prefix[0] = '\0';} 288d1df6f1dSMatthew G. Knepley if (Nf > 1) { 2899566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, &fis, &fdm)); 2909566063dSJacob Faibussowitsch PetscCall(VecGetSubVector(v, fis, &fv)); 2919566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(prefix, fname,sizeof(prefix))); 2929566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(prefix, "_",sizeof(prefix))); 293d1df6f1dSMatthew G. Knepley } 294d1df6f1dSMatthew G. Knepley for (comp = 0; comp < Nc; ++comp, ++w) { 295d1df6f1dSMatthew G. Knepley PetscInt nmax = 2; 296d1df6f1dSMatthew G. Knepley 2979566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, w, &draw)); 29863a3b9bcSJacob Faibussowitsch if (Nc > 1) PetscCall(PetscSNPrintf(title, sizeof(title), "%s:%s_%" PetscInt_FMT " Step: %" PetscInt_FMT " Time: %.4g", name, fname, comp, step, (double)time)); 29963a3b9bcSJacob Faibussowitsch else PetscCall(PetscSNPrintf(title, sizeof(title), "%s:%s Step: %" PetscInt_FMT " Time: %.4g", name, fname, step, (double)time)); 3009566063dSJacob Faibussowitsch PetscCall(PetscDrawSetTitle(draw, title)); 301d1df6f1dSMatthew G. Knepley 302d1df6f1dSMatthew G. Knepley /* TODO Get max and min only for this component */ 3039566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetRealArray(NULL, prefix, "-vec_view_bounds", vbound, &nmax, &flg)); 304339e3443SMatthew G. Knepley if (!flg) { 3059566063dSJacob Faibussowitsch PetscCall(VecMin(fv, NULL, &vbound[0])); 3069566063dSJacob Faibussowitsch PetscCall(VecMax(fv, NULL, &vbound[1])); 307d1df6f1dSMatthew G. Knepley if (vbound[1] <= vbound[0]) vbound[1] = vbound[0] + 1.0; 308339e3443SMatthew G. Knepley } 3099566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw, &popup)); 3109566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup, vbound[0], vbound[1])); 3119566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, bound[0], bound[1], bound[2], bound[3])); 312e412dcbdSMatthew G. Knepley 3139566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(fv, &array)); 314e412dcbdSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 31599a2f7bcSMatthew G. Knepley PetscScalar *coords = NULL, *a = NULL; 316e56f9228SJed Brown PetscInt numCoords, color[4] = {-1,-1,-1,-1}; 317e412dcbdSMatthew G. Knepley 3189566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(fdm, c, array, &a)); 319339e3443SMatthew G. Knepley if (a) { 320d1df6f1dSMatthew G. Knepley color[0] = PetscDrawRealToColor(PetscRealPart(a[comp]), vbound[0], vbound[1]); 321339e3443SMatthew G. Knepley color[1] = color[2] = color[3] = color[0]; 322339e3443SMatthew G. Knepley } else { 323339e3443SMatthew G. Knepley PetscScalar *vals = NULL; 324339e3443SMatthew G. Knepley PetscInt numVals, va; 325339e3443SMatthew G. Knepley 3269566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(fdm, NULL, fv, c, &numVals, &vals)); 32763a3b9bcSJacob Faibussowitsch PetscCheck(numVals % Nc == 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of components %" PetscInt_FMT " does not divide the number of values in the closure %" PetscInt_FMT, Nc, numVals); 328d1df6f1dSMatthew G. Knepley switch (numVals/Nc) { 329d1df6f1dSMatthew G. Knepley case 3: /* P1 Triangle */ 330d1df6f1dSMatthew G. Knepley case 4: /* P1 Quadrangle */ 331d1df6f1dSMatthew G. Knepley for (va = 0; va < numVals/Nc; ++va) color[va] = PetscDrawRealToColor(PetscRealPart(vals[va*Nc+comp]), vbound[0], vbound[1]); 332339e3443SMatthew G. Knepley break; 333d1df6f1dSMatthew G. Knepley case 6: /* P2 Triangle */ 334d1df6f1dSMatthew G. Knepley case 8: /* P2 Quadrangle */ 335d1df6f1dSMatthew G. Knepley for (va = 0; va < numVals/(Nc*2); ++va) color[va] = PetscDrawRealToColor(PetscRealPart(vals[va*Nc+comp + numVals/(Nc*2)]), vbound[0], vbound[1]); 336d1df6f1dSMatthew G. Knepley break; 33763a3b9bcSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of values for cell closure %" PetscInt_FMT " cannot be handled", numVals/Nc); 338339e3443SMatthew G. Knepley } 3399566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(fdm, NULL, fv, c, &numVals, &vals)); 340339e3443SMatthew G. Knepley } 3419566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, coordSection, coordinates, c, &numCoords, &coords)); 342e412dcbdSMatthew G. Knepley switch (numCoords) { 343e412dcbdSMatthew G. Knepley case 6: 3449edc3542SMatthew Knepley case 12: /* Localized triangle */ 3459566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), color[0], color[1], color[2])); 346e412dcbdSMatthew G. Knepley break; 347e412dcbdSMatthew G. Knepley case 8: 3489edc3542SMatthew Knepley case 16: /* Localized quadrilateral */ 3499566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), color[0], color[1], color[2])); 3509566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[4]), PetscRealPart(coords[5]), PetscRealPart(coords[6]), PetscRealPart(coords[7]), PetscRealPart(coords[0]), PetscRealPart(coords[1]), color[2], color[3], color[0])); 351e412dcbdSMatthew G. Knepley break; 35263a3b9bcSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot draw cells with %" PetscInt_FMT " coordinates", numCoords); 353e412dcbdSMatthew G. Knepley } 3549566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, coordSection, coordinates, c, &numCoords, &coords)); 355e412dcbdSMatthew G. Knepley } 3569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(fv, &array)); 3579566063dSJacob Faibussowitsch PetscCall(PetscDrawFlush(draw)); 3589566063dSJacob Faibussowitsch PetscCall(PetscDrawPause(draw)); 3599566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 360d1df6f1dSMatthew G. Knepley } 361d1df6f1dSMatthew G. Knepley if (Nf > 1) { 3629566063dSJacob Faibussowitsch PetscCall(VecRestoreSubVector(v, fis, &fv)); 3639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fis)); 3649566063dSJacob Faibussowitsch PetscCall(DMDestroy(&fdm)); 365d1df6f1dSMatthew G. Knepley } 366d1df6f1dSMatthew G. Knepley } 367e412dcbdSMatthew G. Knepley PetscFunctionReturn(0); 368e412dcbdSMatthew G. Knepley } 369e412dcbdSMatthew G. Knepley 3706913077dSMatthew G. Knepley static PetscErrorCode VecView_Plex_Local_Draw(Vec v, PetscViewer viewer) 3716913077dSMatthew G. Knepley { 3726913077dSMatthew G. Knepley DM dm; 3736913077dSMatthew G. Knepley PetscDraw draw; 3746913077dSMatthew G. Knepley PetscInt dim; 3756913077dSMatthew G. Knepley PetscBool isnull; 3766913077dSMatthew G. Knepley 3776913077dSMatthew G. Knepley PetscFunctionBegin; 3789566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 3799566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 3806913077dSMatthew G. Knepley if (isnull) PetscFunctionReturn(0); 3816913077dSMatthew G. Knepley 3829566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 3839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 3846913077dSMatthew G. Knepley switch (dim) { 3859566063dSJacob Faibussowitsch case 1: PetscCall(VecView_Plex_Local_Draw_1D(v, viewer));break; 3869566063dSJacob Faibussowitsch case 2: PetscCall(VecView_Plex_Local_Draw_2D(v, viewer));break; 3875f80ce2aSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) v), PETSC_ERR_SUP, "Cannot draw meshes of dimension %" PetscInt_FMT ". Try PETSCVIEWERGLVIS", dim); 3886913077dSMatthew G. Knepley } 3896913077dSMatthew G. Knepley PetscFunctionReturn(0); 3906913077dSMatthew G. Knepley } 3916913077dSMatthew G. Knepley 392684b87d9SLisandro Dalcin static PetscErrorCode VecView_Plex_Local_VTK(Vec v, PetscViewer viewer) 393684b87d9SLisandro Dalcin { 394684b87d9SLisandro Dalcin DM dm; 395684b87d9SLisandro Dalcin Vec locv; 396684b87d9SLisandro Dalcin const char *name; 397684b87d9SLisandro Dalcin PetscSection section; 398684b87d9SLisandro Dalcin PetscInt pStart, pEnd; 399e630c359SToby Isaac PetscInt numFields; 400684b87d9SLisandro Dalcin PetscViewerVTKFieldType ft; 401684b87d9SLisandro Dalcin 402684b87d9SLisandro Dalcin PetscFunctionBegin; 4039566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 4049566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm, &locv)); /* VTK viewer requires exclusive ownership of the vector */ 4059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 4069566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) locv, name)); 4079566063dSJacob Faibussowitsch PetscCall(VecCopy(v, locv)); 4089566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 4099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 410e630c359SToby Isaac if (!numFields) { 4119566063dSJacob Faibussowitsch PetscCall(DMPlexGetFieldType_Internal(dm, section, PETSC_DETERMINE, &pStart, &pEnd, &ft)); 4129566063dSJacob Faibussowitsch PetscCall(PetscViewerVTKAddField(viewer, (PetscObject) dm, DMPlexVTKWriteAll, PETSC_DEFAULT, ft, PETSC_TRUE,(PetscObject) locv)); 413e630c359SToby Isaac } else { 414e630c359SToby Isaac PetscInt f; 415e630c359SToby Isaac 416e630c359SToby Isaac for (f = 0; f < numFields; f++) { 4179566063dSJacob Faibussowitsch PetscCall(DMPlexGetFieldType_Internal(dm, section, f, &pStart, &pEnd, &ft)); 418e630c359SToby Isaac if (ft == PETSC_VTK_INVALID) continue; 4199566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)locv)); 4209566063dSJacob Faibussowitsch PetscCall(PetscViewerVTKAddField(viewer, (PetscObject) dm, DMPlexVTKWriteAll, f, ft, PETSC_TRUE,(PetscObject) locv)); 421e630c359SToby Isaac } 4229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&locv)); 423e630c359SToby Isaac } 424684b87d9SLisandro Dalcin PetscFunctionReturn(0); 425684b87d9SLisandro Dalcin } 426684b87d9SLisandro Dalcin 427552f7358SJed Brown PetscErrorCode VecView_Plex_Local(Vec v, PetscViewer viewer) 428552f7358SJed Brown { 429552f7358SJed Brown DM dm; 430684b87d9SLisandro Dalcin PetscBool isvtk, ishdf5, isdraw, isglvis; 431552f7358SJed Brown 432552f7358SJed Brown PetscFunctionBegin; 4339566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 43428b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject)v), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 4359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 4369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 4379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERDRAW, &isdraw)); 4389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERGLVIS, &isglvis)); 439684b87d9SLisandro Dalcin if (isvtk || ishdf5 || isdraw || isglvis) { 440684b87d9SLisandro Dalcin PetscInt i,numFields; 441684b87d9SLisandro Dalcin PetscObject fe; 442ef31f671SMatthew G. Knepley PetscBool fem = PETSC_FALSE; 443684b87d9SLisandro Dalcin Vec locv = v; 444684b87d9SLisandro Dalcin const char *name; 445684b87d9SLisandro Dalcin PetscInt step; 446684b87d9SLisandro Dalcin PetscReal time; 447ef31f671SMatthew G. Knepley 4489566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 449684b87d9SLisandro Dalcin for (i=0; i<numFields; i++) { 4509566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, i, NULL, &fe)); 451684b87d9SLisandro Dalcin if (fe->classid == PETSCFE_CLASSID) { fem = PETSC_TRUE; break; } 452ef31f671SMatthew G. Knepley } 453684b87d9SLisandro Dalcin if (fem) { 454798534f6SMatthew G. Knepley PetscObject isZero; 455798534f6SMatthew G. Knepley 4569566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locv)); 4579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 4589566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) locv, name)); 4599566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) v, "__Vec_bc_zero__", &isZero)); 4609566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) locv, "__Vec_bc_zero__", isZero)); 4619566063dSJacob Faibussowitsch PetscCall(VecCopy(v, locv)); 4629566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 4639566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locv, time, NULL, NULL, NULL)); 464ef31f671SMatthew G. Knepley } 465552f7358SJed Brown if (isvtk) { 4669566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local_VTK(locv, viewer)); 467b136c2c9SMatthew G. Knepley } else if (ishdf5) { 468b136c2c9SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 4699566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local_HDF5_Internal(locv, viewer)); 470b136c2c9SMatthew G. Knepley #else 471b136c2c9SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 472b136c2c9SMatthew G. Knepley #endif 473f13a32a3SMatthew G. Knepley } else if (isdraw) { 4749566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local_Draw(locv, viewer)); 475684b87d9SLisandro Dalcin } else if (isglvis) { 4769566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, &step, NULL)); 4779566063dSJacob Faibussowitsch PetscCall(PetscViewerGLVisSetSnapId(viewer, step)); 4789566063dSJacob Faibussowitsch PetscCall(VecView_GLVis(locv, viewer)); 479684b87d9SLisandro Dalcin } 480798534f6SMatthew G. Knepley if (fem) { 4819566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) locv, "__Vec_bc_zero__", NULL)); 4829566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locv)); 483798534f6SMatthew G. Knepley } 484552f7358SJed Brown } else { 485684b87d9SLisandro Dalcin PetscBool isseq; 486684b87d9SLisandro Dalcin 4879566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) v, VECSEQ, &isseq)); 4889566063dSJacob Faibussowitsch if (isseq) PetscCall(VecView_Seq(v, viewer)); 4899566063dSJacob Faibussowitsch else PetscCall(VecView_MPI(v, viewer)); 490552f7358SJed Brown } 491552f7358SJed Brown PetscFunctionReturn(0); 492552f7358SJed Brown } 493552f7358SJed Brown 494552f7358SJed Brown PetscErrorCode VecView_Plex(Vec v, PetscViewer viewer) 495552f7358SJed Brown { 496552f7358SJed Brown DM dm; 4976823f3c5SBlaise Bourdin PetscBool isvtk, ishdf5, isdraw, isglvis, isexodusii; 498552f7358SJed Brown 499552f7358SJed Brown PetscFunctionBegin; 5009566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 50128b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject)v), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 5029566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 5039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 5049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERDRAW, &isdraw)); 5059566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERGLVIS, &isglvis)); 5069566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWEREXODUSII, &isexodusii)); 507684b87d9SLisandro Dalcin if (isvtk || isdraw || isglvis) { 508552f7358SJed Brown Vec locv; 509798534f6SMatthew G. Knepley PetscObject isZero; 510552f7358SJed Brown const char *name; 511552f7358SJed Brown 5129566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locv)); 5139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 5149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) locv, name)); 5159566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, v, INSERT_VALUES, locv)); 5169566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, v, INSERT_VALUES, locv)); 5179566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) v, "__Vec_bc_zero__", &isZero)); 5189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) locv, "__Vec_bc_zero__", isZero)); 5199566063dSJacob Faibussowitsch PetscCall(VecView_Plex_Local(locv, viewer)); 5209566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) locv, "__Vec_bc_zero__", NULL)); 5219566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locv)); 522b136c2c9SMatthew G. Knepley } else if (ishdf5) { 523b136c2c9SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 5249566063dSJacob Faibussowitsch PetscCall(VecView_Plex_HDF5_Internal(v, viewer)); 525b136c2c9SMatthew G. Knepley #else 526b136c2c9SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 527b136c2c9SMatthew G. Knepley #endif 5286823f3c5SBlaise Bourdin } else if (isexodusii) { 5296823f3c5SBlaise Bourdin #if defined(PETSC_HAVE_EXODUSII) 5309566063dSJacob Faibussowitsch PetscCall(VecView_PlexExodusII_Internal(v, viewer)); 5316823f3c5SBlaise Bourdin #else 5326823f3c5SBlaise Bourdin SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "ExodusII not supported in this build.\nPlease reconfigure using --download-exodusii"); 5336823f3c5SBlaise Bourdin #endif 534552f7358SJed Brown } else { 535684b87d9SLisandro Dalcin PetscBool isseq; 536684b87d9SLisandro Dalcin 5379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) v, VECSEQ, &isseq)); 5389566063dSJacob Faibussowitsch if (isseq) PetscCall(VecView_Seq(v, viewer)); 5399566063dSJacob Faibussowitsch else PetscCall(VecView_MPI(v, viewer)); 540552f7358SJed Brown } 541552f7358SJed Brown PetscFunctionReturn(0); 542552f7358SJed Brown } 543552f7358SJed Brown 544d930f514SMatthew G. Knepley PetscErrorCode VecView_Plex_Native(Vec originalv, PetscViewer viewer) 545d930f514SMatthew G. Knepley { 546d930f514SMatthew G. Knepley DM dm; 547d930f514SMatthew G. Knepley MPI_Comm comm; 548d930f514SMatthew G. Knepley PetscViewerFormat format; 549d930f514SMatthew G. Knepley Vec v; 550d930f514SMatthew G. Knepley PetscBool isvtk, ishdf5; 551d930f514SMatthew G. Knepley 552d930f514SMatthew G. Knepley PetscFunctionBegin; 5539566063dSJacob Faibussowitsch PetscCall(VecGetDM(originalv, &dm)); 5549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) originalv, &comm)); 55528b400f6SJacob Faibussowitsch PetscCheck(dm,comm, PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 5569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 5579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 5589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 559d930f514SMatthew G. Knepley if (format == PETSC_VIEWER_NATIVE) { 560a8ad634aSStefano Zampini /* Natural ordering is the common case for DMDA, NATIVE means plain vector, for PLEX is the opposite */ 561a8ad634aSStefano Zampini /* this need a better fix */ 562a8ad634aSStefano Zampini if (dm->useNatural) { 563a8ad634aSStefano Zampini if (dm->sfNatural) { 564d930f514SMatthew G. Knepley const char *vecname; 565d930f514SMatthew G. Knepley PetscInt n, nroots; 566d930f514SMatthew G. Knepley 5679566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(originalv, &n)); 5689566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sfNatural, &nroots, NULL, NULL, NULL)); 569d930f514SMatthew G. Knepley if (n == nroots) { 5709566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &v)); 5719566063dSJacob Faibussowitsch PetscCall(DMPlexGlobalToNaturalBegin(dm, originalv, v)); 5729566063dSJacob Faibussowitsch PetscCall(DMPlexGlobalToNaturalEnd(dm, originalv, v)); 5739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) originalv, &vecname)); 5749566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) v, vecname)); 575d930f514SMatthew G. Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "DM global to natural SF only handles global vectors"); 576d930f514SMatthew G. Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONGSTATE, "DM global to natural SF was not created"); 577a8ad634aSStefano Zampini } else v = originalv; 578a8ad634aSStefano Zampini } else v = originalv; 579a8ad634aSStefano Zampini 580d930f514SMatthew G. Knepley if (ishdf5) { 581d930f514SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 5829566063dSJacob Faibussowitsch PetscCall(VecView_Plex_HDF5_Native_Internal(v, viewer)); 583d930f514SMatthew G. Knepley #else 584d930f514SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 585d930f514SMatthew G. Knepley #endif 586d930f514SMatthew G. Knepley } else if (isvtk) { 587d930f514SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_SUP, "VTK format does not support viewing in natural order. Please switch to HDF5."); 588d930f514SMatthew G. Knepley } else { 589d930f514SMatthew G. Knepley PetscBool isseq; 590d930f514SMatthew G. Knepley 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) v, VECSEQ, &isseq)); 5929566063dSJacob Faibussowitsch if (isseq) PetscCall(VecView_Seq(v, viewer)); 5939566063dSJacob Faibussowitsch else PetscCall(VecView_MPI(v, viewer)); 594d930f514SMatthew G. Knepley } 5959566063dSJacob Faibussowitsch if (v != originalv) PetscCall(DMRestoreGlobalVector(dm, &v)); 596d930f514SMatthew G. Knepley PetscFunctionReturn(0); 597d930f514SMatthew G. Knepley } 598d930f514SMatthew G. Knepley 5992c40f234SMatthew G. Knepley PetscErrorCode VecLoad_Plex_Local(Vec v, PetscViewer viewer) 6002c40f234SMatthew G. Knepley { 6012c40f234SMatthew G. Knepley DM dm; 6022c40f234SMatthew G. Knepley PetscBool ishdf5; 6032c40f234SMatthew G. Knepley 6042c40f234SMatthew G. Knepley PetscFunctionBegin; 6059566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 60628b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject)v), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 6082c40f234SMatthew G. Knepley if (ishdf5) { 6092c40f234SMatthew G. Knepley DM dmBC; 6102c40f234SMatthew G. Knepley Vec gv; 6112c40f234SMatthew G. Knepley const char *name; 6122c40f234SMatthew G. Knepley 6139566063dSJacob Faibussowitsch PetscCall(DMGetOutputDM(dm, &dmBC)); 6149566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmBC, &gv)); 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) v, &name)); 6169566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) gv, name)); 6179566063dSJacob Faibussowitsch PetscCall(VecLoad_Default(gv, viewer)); 6189566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmBC, gv, INSERT_VALUES, v)); 6199566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmBC, gv, INSERT_VALUES, v)); 6209566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmBC, &gv)); 6212c40f234SMatthew G. Knepley } else { 6229566063dSJacob Faibussowitsch PetscCall(VecLoad_Default(v, viewer)); 6232c40f234SMatthew G. Knepley } 6242c40f234SMatthew G. Knepley PetscFunctionReturn(0); 6252c40f234SMatthew G. Knepley } 6262c40f234SMatthew G. Knepley 6272c40f234SMatthew G. Knepley PetscErrorCode VecLoad_Plex(Vec v, PetscViewer viewer) 6282c40f234SMatthew G. Knepley { 6292c40f234SMatthew G. Knepley DM dm; 6306823f3c5SBlaise Bourdin PetscBool ishdf5,isexodusii; 6312c40f234SMatthew G. Knepley 6322c40f234SMatthew G. Knepley PetscFunctionBegin; 6339566063dSJacob Faibussowitsch PetscCall(VecGetDM(v, &dm)); 63428b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject)v), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 6359566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 6369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWEREXODUSII, &isexodusii)); 6372c40f234SMatthew G. Knepley if (ishdf5) { 638878b459fSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6399566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex_HDF5_Internal(v, viewer)); 640b136c2c9SMatthew G. Knepley #else 641b136c2c9SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 642878b459fSMatthew G. Knepley #endif 6436823f3c5SBlaise Bourdin } else if (isexodusii) { 6446823f3c5SBlaise Bourdin #if defined(PETSC_HAVE_EXODUSII) 6459566063dSJacob Faibussowitsch PetscCall(VecLoad_PlexExodusII_Internal(v, viewer)); 6466823f3c5SBlaise Bourdin #else 6476823f3c5SBlaise Bourdin SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "ExodusII not supported in this build.\nPlease reconfigure using --download-exodusii"); 6486823f3c5SBlaise Bourdin #endif 6492c40f234SMatthew G. Knepley } else { 6509566063dSJacob Faibussowitsch PetscCall(VecLoad_Default(v, viewer)); 651552f7358SJed Brown } 652552f7358SJed Brown PetscFunctionReturn(0); 653552f7358SJed Brown } 654552f7358SJed Brown 655d930f514SMatthew G. Knepley PetscErrorCode VecLoad_Plex_Native(Vec originalv, PetscViewer viewer) 656d930f514SMatthew G. Knepley { 657d930f514SMatthew G. Knepley DM dm; 658d930f514SMatthew G. Knepley PetscViewerFormat format; 659d930f514SMatthew G. Knepley PetscBool ishdf5; 660d930f514SMatthew G. Knepley 661d930f514SMatthew G. Knepley PetscFunctionBegin; 6629566063dSJacob Faibussowitsch PetscCall(VecGetDM(originalv, &dm)); 66328b400f6SJacob Faibussowitsch PetscCheck(dm,PetscObjectComm((PetscObject) originalv), PETSC_ERR_ARG_WRONG, "Vector not generated from a DM"); 6649566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 6659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 666d930f514SMatthew G. Knepley if (format == PETSC_VIEWER_NATIVE) { 667a8ad634aSStefano Zampini if (dm->useNatural) { 668d930f514SMatthew G. Knepley if (dm->sfNatural) { 669d930f514SMatthew G. Knepley if (ishdf5) { 670d930f514SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 671d930f514SMatthew G. Knepley Vec v; 672d930f514SMatthew G. Knepley const char *vecname; 673d930f514SMatthew G. Knepley 6749566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &v)); 6759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) originalv, &vecname)); 6769566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) v, vecname)); 6779566063dSJacob Faibussowitsch PetscCall(VecLoad_Plex_HDF5_Native_Internal(v, viewer)); 6789566063dSJacob Faibussowitsch PetscCall(DMPlexNaturalToGlobalBegin(dm, v, originalv)); 6799566063dSJacob Faibussowitsch PetscCall(DMPlexNaturalToGlobalEnd(dm, v, originalv)); 6809566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &v)); 681d930f514SMatthew G. Knepley #else 682d930f514SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 683d930f514SMatthew G. Knepley #endif 684d930f514SMatthew G. Knepley } else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Reading in natural order is not supported for anything but HDF5."); 685d930f514SMatthew G. Knepley } 686a8ad634aSStefano Zampini } else { 6879566063dSJacob Faibussowitsch PetscCall(VecLoad_Default(originalv, viewer)); 688a8ad634aSStefano Zampini } 689d930f514SMatthew G. Knepley } 690d930f514SMatthew G. Knepley PetscFunctionReturn(0); 691d930f514SMatthew G. Knepley } 692d930f514SMatthew G. Knepley 6937cd05799SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexView_Ascii_Geometry(DM dm, PetscViewer viewer) 694731e8ddeSMatthew G. Knepley { 695731e8ddeSMatthew G. Knepley PetscSection coordSection; 696731e8ddeSMatthew G. Knepley Vec coordinates; 697ba2698f1SMatthew G. Knepley DMLabel depthLabel, celltypeLabel; 698731e8ddeSMatthew G. Knepley const char *name[4]; 699731e8ddeSMatthew G. Knepley const PetscScalar *a; 700731e8ddeSMatthew G. Knepley PetscInt dim, pStart, pEnd, cStart, cEnd, c; 701731e8ddeSMatthew G. Knepley 702731e8ddeSMatthew G. Knepley PetscFunctionBegin; 7039566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 7049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 7059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 7069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 7079566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &celltypeLabel)); 7089566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 7099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &pStart, &pEnd)); 7109566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &a)); 711731e8ddeSMatthew G. Knepley name[0] = "vertex"; 712731e8ddeSMatthew G. Knepley name[1] = "edge"; 713731e8ddeSMatthew G. Knepley name[dim-1] = "face"; 714731e8ddeSMatthew G. Knepley name[dim] = "cell"; 715731e8ddeSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 716731e8ddeSMatthew G. Knepley PetscInt *closure = NULL; 717ba2698f1SMatthew G. Knepley PetscInt closureSize, cl, ct; 718731e8ddeSMatthew G. Knepley 7199566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(celltypeLabel, c, &ct)); 72063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Geometry for cell %" PetscInt_FMT " polytope type %s:\n", c, DMPolytopeTypes[ct])); 7219566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 7229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 723731e8ddeSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 724731e8ddeSMatthew G. Knepley PetscInt point = closure[cl], depth, dof, off, d, p; 725731e8ddeSMatthew G. Knepley 726731e8ddeSMatthew G. Knepley if ((point < pStart) || (point >= pEnd)) continue; 7279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, point, &dof)); 728731e8ddeSMatthew G. Knepley if (!dof) continue; 7299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, point, &depth)); 7309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, point, &off)); 73163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s %" PetscInt_FMT " coords:", name[depth], point)); 732731e8ddeSMatthew G. Knepley for (p = 0; p < dof/dim; ++p) { 7339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (")); 734731e8ddeSMatthew G. Knepley for (d = 0; d < dim; ++d) { 7359566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscViewerASCIIPrintf(viewer, ", ")); 7369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%g", (double) PetscRealPart(a[off+p*dim+d]))); 737731e8ddeSMatthew G. Knepley } 7389566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, ")")); 739731e8ddeSMatthew G. Knepley } 7409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 741731e8ddeSMatthew G. Knepley } 7429566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 7439566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 744731e8ddeSMatthew G. Knepley } 7459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &a)); 746731e8ddeSMatthew G. Knepley PetscFunctionReturn(0); 747731e8ddeSMatthew G. Knepley } 748731e8ddeSMatthew G. Knepley 74919ad8254SMatthew G. Knepley typedef enum {CS_CARTESIAN, CS_POLAR, CS_CYLINDRICAL, CS_SPHERICAL} CoordSystem; 75019ad8254SMatthew G. Knepley const char *CoordSystems[] = {"cartesian", "polar", "cylindrical", "spherical", "CoordSystem", "CS_", NULL}; 75119ad8254SMatthew G. Knepley 75219ad8254SMatthew G. Knepley static PetscErrorCode DMPlexView_Ascii_Coordinates(PetscViewer viewer, CoordSystem cs, PetscInt dim, const PetscScalar x[]) 75319ad8254SMatthew G. Knepley { 75419ad8254SMatthew G. Knepley PetscInt i; 75519ad8254SMatthew G. Knepley 75619ad8254SMatthew G. Knepley PetscFunctionBegin; 75719ad8254SMatthew G. Knepley if (dim > 3) { 7589566063dSJacob Faibussowitsch for (i = 0; i < dim; ++i) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " %g", (double) PetscRealPart(x[i]))); 75919ad8254SMatthew G. Knepley } else { 760bd83fdcbSStefano Zampini PetscReal coords[3], trcoords[3] = {0., 0., 0.}; 76119ad8254SMatthew G. Knepley 76219ad8254SMatthew G. Knepley for (i = 0; i < dim; ++i) coords[i] = PetscRealPart(x[i]); 76319ad8254SMatthew G. Knepley switch (cs) { 76419ad8254SMatthew G. Knepley case CS_CARTESIAN: for (i = 0; i < dim; ++i) trcoords[i] = coords[i];break; 76519ad8254SMatthew G. Knepley case CS_POLAR: 76663a3b9bcSJacob Faibussowitsch PetscCheck(dim == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Polar coordinates are for 2 dimension, not %" PetscInt_FMT, dim); 76719ad8254SMatthew G. Knepley trcoords[0] = PetscSqrtReal(PetscSqr(coords[0]) + PetscSqr(coords[1])); 76819ad8254SMatthew G. Knepley trcoords[1] = PetscAtan2Real(coords[1], coords[0]); 76919ad8254SMatthew G. Knepley break; 77019ad8254SMatthew G. Knepley case CS_CYLINDRICAL: 77163a3b9bcSJacob Faibussowitsch PetscCheck(dim == 3,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cylindrical coordinates are for 3 dimension, not %" PetscInt_FMT, dim); 77219ad8254SMatthew G. Knepley trcoords[0] = PetscSqrtReal(PetscSqr(coords[0]) + PetscSqr(coords[1])); 77319ad8254SMatthew G. Knepley trcoords[1] = PetscAtan2Real(coords[1], coords[0]); 77419ad8254SMatthew G. Knepley trcoords[2] = coords[2]; 77519ad8254SMatthew G. Knepley break; 77619ad8254SMatthew G. Knepley case CS_SPHERICAL: 77763a3b9bcSJacob Faibussowitsch PetscCheck(dim == 3,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Spherical coordinates are for 3 dimension, not %" PetscInt_FMT, dim); 77819ad8254SMatthew G. Knepley trcoords[0] = PetscSqrtReal(PetscSqr(coords[0]) + PetscSqr(coords[1]) + PetscSqr(coords[2])); 77919ad8254SMatthew G. Knepley trcoords[1] = PetscAtan2Real(PetscSqrtReal(PetscSqr(coords[0]) + PetscSqr(coords[1])), coords[2]); 78019ad8254SMatthew G. Knepley trcoords[2] = PetscAtan2Real(coords[1], coords[0]); 78119ad8254SMatthew G. Knepley break; 78219ad8254SMatthew G. Knepley } 7839566063dSJacob Faibussowitsch for (i = 0; i < dim; ++i) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " %g", (double) trcoords[i])); 78419ad8254SMatthew G. Knepley } 78519ad8254SMatthew G. Knepley PetscFunctionReturn(0); 78619ad8254SMatthew G. Knepley } 78719ad8254SMatthew G. Knepley 7887cd05799SMatthew G. Knepley static PetscErrorCode DMPlexView_Ascii(DM dm, PetscViewer viewer) 789552f7358SJed Brown { 790552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 791552f7358SJed Brown DM cdm; 792552f7358SJed Brown PetscSection coordSection; 793552f7358SJed Brown Vec coordinates; 794552f7358SJed Brown PetscViewerFormat format; 795552f7358SJed Brown 796552f7358SJed Brown PetscFunctionBegin; 7979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &cdm)); 7989566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(cdm, &coordSection)); 7999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 8009566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 801552f7358SJed Brown if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 802552f7358SJed Brown const char *name; 803f73eea6eSMatthew G. Knepley PetscInt dim, cellHeight, maxConeSize, maxSupportSize; 8049318fe57SMatthew G. Knepley PetscInt pStart, pEnd, p, numLabels, l; 805552f7358SJed Brown PetscMPIInt rank, size; 806552f7358SJed Brown 8079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 8089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 8099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) dm, &name)); 8109566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8119566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 8129566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8139566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 81463a3b9bcSJacob Faibussowitsch if (name) PetscCall(PetscViewerASCIIPrintf(viewer, "%s in %" PetscInt_FMT " dimension%s:\n", name, dim, dim == 1 ? "" : "s")); 81563a3b9bcSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Mesh in %" PetscInt_FMT " dimension%s:\n", dim, dim == 1 ? "" : "s")); 81663a3b9bcSJacob Faibussowitsch if (cellHeight) PetscCall(PetscViewerASCIIPrintf(viewer, " Cells are at height %" PetscInt_FMT "\n", cellHeight)); 81763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Supports:\n")); 8189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 81963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Max support size: %" PetscInt_FMT "\n", rank, maxSupportSize)); 820552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 821552f7358SJed Brown PetscInt dof, off, s; 822552f7358SJed Brown 8239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, p, &dof)); 8249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, p, &off)); 825552f7358SJed Brown for (s = off; s < off+dof; ++s) { 82663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d]: %" PetscInt_FMT " ----> %" PetscInt_FMT "\n", rank, p, mesh->supports[s])); 827552f7358SJed Brown } 828552f7358SJed Brown } 8299566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 83063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Cones:\n")); 83163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Max cone size: %" PetscInt_FMT "\n", rank, maxConeSize)); 832552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 833552f7358SJed Brown PetscInt dof, off, c; 834552f7358SJed Brown 8359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 8369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 837552f7358SJed Brown for (c = off; c < off+dof; ++c) { 83863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d]: %" PetscInt_FMT " <---- %" PetscInt_FMT " (%" PetscInt_FMT ")\n", rank, p, mesh->cones[c], mesh->coneOrientations[c])); 839552f7358SJed Brown } 840552f7358SJed Brown } 8419566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 8433d2e540fSStefano Zampini if (coordSection && coordinates) { 84419ad8254SMatthew G. Knepley CoordSystem cs = CS_CARTESIAN; 84519ad8254SMatthew G. Knepley const PetscScalar *array; 84619ad8254SMatthew G. Knepley PetscInt Nf, Nc, pStart, pEnd, p; 84719ad8254SMatthew G. Knepley PetscMPIInt rank; 84819ad8254SMatthew G. Knepley const char *name; 84919ad8254SMatthew G. Knepley 8509566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetEnum(((PetscObject) viewer)->options, ((PetscObject) viewer)->prefix, "-dm_plex_view_coord_system", CoordSystems, (PetscEnum *) &cs, NULL)); 8519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)viewer), &rank)); 8529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(coordSection, &Nf)); 85363a3b9bcSJacob Faibussowitsch PetscCheck(Nf == 1,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Coordinate section should have 1 field, not %" PetscInt_FMT, Nf); 8549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &Nc)); 8559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &pStart, &pEnd)); 8569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) coordinates, &name)); 85763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s with %" PetscInt_FMT " fields\n", name, Nf)); 85863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " field 0 with %" PetscInt_FMT " components\n", Nc)); 8599566063dSJacob Faibussowitsch if (cs != CS_CARTESIAN) PetscCall(PetscViewerASCIIPrintf(viewer, " output coordinate system: %s\n", CoordSystems[cs])); 86019ad8254SMatthew G. Knepley 8619566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &array)); 8629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8639566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "Process %d:\n", rank)); 86419ad8254SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 86519ad8254SMatthew G. Knepley PetscInt dof, off; 86619ad8254SMatthew G. Knepley 8679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, p, &dof)); 8689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, p, &off)); 86963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " (%4" PetscInt_FMT ") dim %2" PetscInt_FMT " offset %3" PetscInt_FMT, p, dof, off)); 8709566063dSJacob Faibussowitsch PetscCall(DMPlexView_Ascii_Coordinates(viewer, cs, dof, &array[off])); 8719566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\n")); 87219ad8254SMatthew G. Knepley } 8739566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8749566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 8759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &array)); 8763d2e540fSStefano Zampini } 8779566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 8789566063dSJacob Faibussowitsch if (numLabels) PetscCall(PetscViewerASCIIPrintf(viewer, "Labels:\n")); 8799318fe57SMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 8809318fe57SMatthew G. Knepley DMLabel label; 8819318fe57SMatthew G. Knepley PetscBool isdepth; 8829318fe57SMatthew G. Knepley const char *name; 8839318fe57SMatthew G. Knepley 8849566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 8859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isdepth)); 8869318fe57SMatthew G. Knepley if (isdepth) continue; 8879566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 8889566063dSJacob Faibussowitsch PetscCall(DMLabelView(label, viewer)); 8899318fe57SMatthew G. Knepley } 890552f7358SJed Brown if (size > 1) { 891552f7358SJed Brown PetscSF sf; 892552f7358SJed Brown 8939566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 8949566063dSJacob Faibussowitsch PetscCall(PetscSFView(sf, viewer)); 895552f7358SJed Brown } 8969566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 897552f7358SJed Brown } else if (format == PETSC_VIEWER_ASCII_LATEX) { 8980588280cSMatthew G. Knepley const char *name, *color; 8990588280cSMatthew G. Knepley const char *defcolors[3] = {"gray", "orange", "green"}; 9000588280cSMatthew G. Knepley const char *deflcolors[4] = {"blue", "cyan", "red", "magenta"}; 901fe1cc32dSStefano Zampini char lname[PETSC_MAX_PATH_LEN]; 902552f7358SJed Brown PetscReal scale = 2.0; 90378081901SStefano Zampini PetscReal tikzscale = 1.0; 904b7f6ffafSMatthew G. Knepley PetscBool useNumbers = PETSC_TRUE, drawNumbers[4], drawColors[4], useLabels, useColors, plotEdges, drawHasse = PETSC_FALSE; 9050588280cSMatthew G. Knepley double tcoords[3]; 906552f7358SJed Brown PetscScalar *coords; 907b7f6ffafSMatthew G. Knepley PetscInt numLabels, l, numColors, numLColors, dim, d, depth, cStart, cEnd, c, vStart, vEnd, v, eStart = 0, eEnd = 0, e, p, n; 908552f7358SJed Brown PetscMPIInt rank, size; 9090588280cSMatthew G. Knepley char **names, **colors, **lcolors; 910b7f6ffafSMatthew G. Knepley PetscBool flg, lflg; 911fe1cc32dSStefano Zampini PetscBT wp = NULL; 912fe1cc32dSStefano Zampini PetscInt pEnd, pStart; 913552f7358SJed Brown 9149566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9159566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 9169566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 9170588280cSMatthew G. Knepley numLabels = PetscMax(numLabels, 10); 9180588280cSMatthew G. Knepley numColors = 10; 9190588280cSMatthew G. Knepley numLColors = 10; 9209566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(numLabels, &names, numColors, &colors, numLColors, &lcolors)); 9219566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_scale", &scale, NULL)); 9229566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_tikzscale", &tikzscale, NULL)); 9239566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_numbers", &useNumbers, NULL)); 924b7f6ffafSMatthew G. Knepley for (d = 0; d < 4; ++d) drawNumbers[d] = useNumbers; 925b7f6ffafSMatthew G. Knepley for (d = 0; d < 4; ++d) drawColors[d] = PETSC_TRUE; 926b7f6ffafSMatthew G. Knepley n = 4; 9279566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBoolArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_numbers_depth", drawNumbers, &n, &flg)); 9281dca8a05SBarry Smith PetscCheck(!flg || n == dim+1,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Number of flags %" PetscInt_FMT " != %" PetscInt_FMT " dim+1", n, dim+1); 9299566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBoolArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_colors_depth", drawColors, &n, &flg)); 9301dca8a05SBarry Smith PetscCheck(!flg || n == dim+1,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Number of flags %" PetscInt_FMT " != %" PetscInt_FMT " dim+1", n, dim+1); 9319566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetStringArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_labels", names, &numLabels, &useLabels)); 9320588280cSMatthew G. Knepley if (!useLabels) numLabels = 0; 9339566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetStringArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_colors", colors, &numColors, &useColors)); 9340588280cSMatthew G. Knepley if (!useColors) { 9350588280cSMatthew G. Knepley numColors = 3; 9369566063dSJacob Faibussowitsch for (c = 0; c < numColors; ++c) PetscCall(PetscStrallocpy(defcolors[c], &colors[c])); 9370588280cSMatthew G. Knepley } 9389566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetStringArray(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_lcolors", lcolors, &numLColors, &useColors)); 9390588280cSMatthew G. Knepley if (!useColors) { 9400588280cSMatthew G. Knepley numLColors = 4; 9419566063dSJacob Faibussowitsch for (c = 0; c < numLColors; ++c) PetscCall(PetscStrallocpy(deflcolors[c], &lcolors[c])); 9420588280cSMatthew G. Knepley } 9439566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(((PetscObject) viewer)->options, ((PetscObject) viewer)->prefix, "-dm_plex_view_label_filter", lname, sizeof(lname), &lflg)); 944b7f6ffafSMatthew G. Knepley plotEdges = (PetscBool)(depth > 1 && drawNumbers[1] && dim < 3); 9459566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject) viewer)->options,((PetscObject) viewer)->prefix, "-dm_plex_view_edges", &plotEdges, &flg)); 9461dca8a05SBarry Smith PetscCheck(!flg || !plotEdges || depth >= dim,PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Mesh must be interpolated"); 947202fd40aSStefano Zampini if (depth < dim) plotEdges = PETSC_FALSE; 9489566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject) viewer)->options, ((PetscObject) viewer)->prefix, "-dm_plex_view_hasse", &drawHasse, NULL)); 949fe1cc32dSStefano Zampini 950fe1cc32dSStefano Zampini /* filter points with labelvalue != labeldefaultvalue */ 9519566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 9529566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 9539566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 1, &eStart, &eEnd)); 9549566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 955fe1cc32dSStefano Zampini if (lflg) { 956fe1cc32dSStefano Zampini DMLabel lbl; 957fe1cc32dSStefano Zampini 9589566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &lbl)); 959fe1cc32dSStefano Zampini if (lbl) { 960fe1cc32dSStefano Zampini PetscInt val, defval; 961fe1cc32dSStefano Zampini 9629566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(lbl, &defval)); 9639566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(pEnd-pStart, &wp)); 964fe1cc32dSStefano Zampini for (c = pStart; c < pEnd; c++) { 965fe1cc32dSStefano Zampini PetscInt *closure = NULL; 966fe1cc32dSStefano Zampini PetscInt closureSize; 967fe1cc32dSStefano Zampini 9689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(lbl, c, &val)); 969fe1cc32dSStefano Zampini if (val == defval) continue; 970fe1cc32dSStefano Zampini 9719566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 972fe1cc32dSStefano Zampini for (p = 0; p < closureSize*2; p += 2) { 9739566063dSJacob Faibussowitsch PetscCall(PetscBTSet(wp, closure[p] - pStart)); 974fe1cc32dSStefano Zampini } 9759566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 976fe1cc32dSStefano Zampini } 977fe1cc32dSStefano Zampini } 978fe1cc32dSStefano Zampini } 979fe1cc32dSStefano Zampini 9809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 9819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) dm, &name)); 9839566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\ 9840588280cSMatthew G. Knepley \\documentclass[tikz]{standalone}\n\n\ 985552f7358SJed Brown \\usepackage{pgflibraryshapes}\n\ 986552f7358SJed Brown \\usetikzlibrary{backgrounds}\n\ 987552f7358SJed Brown \\usetikzlibrary{arrows}\n\ 9885f80ce2aSJacob Faibussowitsch \\begin{document}\n")); 9890588280cSMatthew G. Knepley if (size > 1) { 9909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%s for process ", name)); 991770b213bSMatthew G Knepley for (p = 0; p < size; ++p) { 99263a3b9bcSJacob Faibussowitsch if (p) PetscCall(PetscViewerASCIIPrintf(viewer, (p == size-1) ? ", and " : ", ")); 99363a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "{\\textcolor{%s}%" PetscInt_FMT "}", colors[p%numColors], p)); 994770b213bSMatthew G Knepley } 9959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, ".\n\n\n")); 9960588280cSMatthew G. Knepley } 997b7f6ffafSMatthew G. Knepley if (drawHasse) { 998b7f6ffafSMatthew G. Knepley PetscInt maxStratum = PetscMax(vEnd-vStart, PetscMax(eEnd-eStart, cEnd-cStart)); 999b7f6ffafSMatthew G. Knepley 100063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\vStart}{%" PetscInt_FMT "}\n", vStart)); 100163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\vEnd}{%" PetscInt_FMT "}\n", vEnd-1)); 100263a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\numVertices}{%" PetscInt_FMT "}\n", vEnd-vStart)); 10039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\vShift}{%.2f}\n", 3 + (maxStratum-(vEnd-vStart))/2.)); 100463a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\eStart}{%" PetscInt_FMT "}\n", eStart)); 100563a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\eEnd}{%" PetscInt_FMT "}\n", eEnd-1)); 10069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\eShift}{%.2f}\n", 3 + (maxStratum-(eEnd-eStart))/2.)); 100763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\numEdges}{%" PetscInt_FMT "}\n", eEnd-eStart)); 100863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\cStart}{%" PetscInt_FMT "}\n", cStart)); 100963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\cEnd}{%" PetscInt_FMT "}\n", cEnd-1)); 101063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\numCells}{%" PetscInt_FMT "}\n", cEnd-cStart)); 10119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\newcommand{\\cShift}{%.2f}\n", 3 + (maxStratum-(cEnd-cStart))/2.)); 1012b7f6ffafSMatthew G. Knepley } 10139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\begin{tikzpicture}[scale = %g,font=\\fontsize{8}{8}\\selectfont]\n", (double) tikzscale)); 1014fe1cc32dSStefano Zampini 1015552f7358SJed Brown /* Plot vertices */ 10169566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 10179566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1018552f7358SJed Brown for (v = vStart; v < vEnd; ++v) { 1019552f7358SJed Brown PetscInt off, dof, d; 10200588280cSMatthew G. Knepley PetscBool isLabeled = PETSC_FALSE; 1021552f7358SJed Brown 1022fe1cc32dSStefano Zampini if (wp && !PetscBTLookup(wp,v - pStart)) continue; 10239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 10249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 10259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\path (")); 102663a3b9bcSJacob Faibussowitsch PetscCheck(dof <= 3,PETSC_COMM_SELF,PETSC_ERR_PLIB,"coordSection vertex %" PetscInt_FMT " has dof %" PetscInt_FMT " > 3",v,dof); 10270588280cSMatthew G. Knepley for (d = 0; d < dof; ++d) { 10280588280cSMatthew G. Knepley tcoords[d] = (double) (scale*PetscRealPart(coords[off+d])); 1029c068d9bbSLisandro Dalcin tcoords[d] = PetscAbs(tcoords[d]) < 1e-10 ? 0.0 : tcoords[d]; 10300588280cSMatthew G. Knepley } 10310588280cSMatthew G. Knepley /* Rotate coordinates since PGF makes z point out of the page instead of up */ 10320588280cSMatthew G. Knepley if (dim == 3) {PetscReal tmp = tcoords[1]; tcoords[1] = tcoords[2]; tcoords[2] = -tmp;} 1033552f7358SJed Brown for (d = 0; d < dof; ++d) { 10349566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ",")); 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "%g", (double) tcoords[d])); 1036552f7358SJed Brown } 1037b7f6ffafSMatthew G. Knepley if (drawHasse) color = colors[0%numColors]; 1038b7f6ffafSMatthew G. Knepley else color = colors[rank%numColors]; 10390588280cSMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 10400588280cSMatthew G. Knepley PetscInt val; 10419566063dSJacob Faibussowitsch PetscCall(DMGetLabelValue(dm, names[l], v, &val)); 10420588280cSMatthew G. Knepley if (val >= 0) {color = lcolors[l%numLColors]; isLabeled = PETSC_TRUE; break;} 10430588280cSMatthew G. Knepley } 1044b7f6ffafSMatthew G. Knepley if (drawNumbers[0]) { 104563a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [draw,shape=circle,color=%s] {%" PetscInt_FMT "};\n", v, rank, color, v)); 1046b7f6ffafSMatthew G. Knepley } else if (drawColors[0]) { 104763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [fill,inner sep=%dpt,shape=circle,color=%s] {};\n", v, rank, !isLabeled ? 1 : 2, color)); 1048b7f6ffafSMatthew G. Knepley } else { 104963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [] {};\n", v, rank)); 10500588280cSMatthew G. Knepley } 1051552f7358SJed Brown } 10529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 10539566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 1054b7f6ffafSMatthew G. Knepley /* Plot edges */ 1055b7f6ffafSMatthew G. Knepley if (plotEdges) { 10569566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 10579566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\path\n")); 1058b7f6ffafSMatthew G. Knepley for (e = eStart; e < eEnd; ++e) { 1059b7f6ffafSMatthew G. Knepley const PetscInt *cone; 1060b7f6ffafSMatthew G. Knepley PetscInt coneSize, offA, offB, dof, d; 1061b7f6ffafSMatthew G. Knepley 1062b7f6ffafSMatthew G. Knepley if (wp && !PetscBTLookup(wp,e - pStart)) continue; 10639566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, e, &coneSize)); 106463a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " cone should have two vertices, not %" PetscInt_FMT, e, coneSize); 10659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, e, &cone)); 10669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, cone[0], &dof)); 10679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, cone[0], &offA)); 10689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, cone[1], &offB)); 10699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "(")); 1070b7f6ffafSMatthew G. Knepley for (d = 0; d < dof; ++d) { 1071b7f6ffafSMatthew G. Knepley tcoords[d] = (double) (0.5*scale*PetscRealPart(coords[offA+d]+coords[offB+d])); 1072b7f6ffafSMatthew G. Knepley tcoords[d] = PetscAbs(tcoords[d]) < 1e-10 ? 0.0 : tcoords[d]; 1073b7f6ffafSMatthew G. Knepley } 1074b7f6ffafSMatthew G. Knepley /* Rotate coordinates since PGF makes z point out of the page instead of up */ 1075b7f6ffafSMatthew G. Knepley if (dim == 3) {PetscReal tmp = tcoords[1]; tcoords[1] = tcoords[2]; tcoords[2] = -tmp;} 1076b7f6ffafSMatthew G. Knepley for (d = 0; d < dof; ++d) { 10779566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ",")); 10789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "%g", (double)tcoords[d])); 1079b7f6ffafSMatthew G. Knepley } 1080b7f6ffafSMatthew G. Knepley if (drawHasse) color = colors[1%numColors]; 1081b7f6ffafSMatthew G. Knepley else color = colors[rank%numColors]; 1082b7f6ffafSMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 1083b7f6ffafSMatthew G. Knepley PetscInt val; 10849566063dSJacob Faibussowitsch PetscCall(DMGetLabelValue(dm, names[l], v, &val)); 1085b7f6ffafSMatthew G. Knepley if (val >= 0) {color = lcolors[l%numLColors]; break;} 1086b7f6ffafSMatthew G. Knepley } 108763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [draw,shape=circle,color=%s] {%" PetscInt_FMT "} --\n", e, rank, color, e)); 1088b7f6ffafSMatthew G. Knepley } 10899566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 10909566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10919566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "(0,0);\n")); 1092b7f6ffafSMatthew G. Knepley } 1093846a3e8bSMatthew G. Knepley /* Plot cells */ 1094b7f6ffafSMatthew G. Knepley if (dim == 3 || !drawNumbers[1]) { 1095846a3e8bSMatthew G. Knepley for (e = eStart; e < eEnd; ++e) { 1096846a3e8bSMatthew G. Knepley const PetscInt *cone; 1097846a3e8bSMatthew G. Knepley 1098fe1cc32dSStefano Zampini if (wp && !PetscBTLookup(wp,e - pStart)) continue; 1099846a3e8bSMatthew G. Knepley color = colors[rank%numColors]; 1100846a3e8bSMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 1101846a3e8bSMatthew G. Knepley PetscInt val; 11029566063dSJacob Faibussowitsch PetscCall(DMGetLabelValue(dm, names[l], e, &val)); 1103846a3e8bSMatthew G. Knepley if (val >= 0) {color = lcolors[l%numLColors]; break;} 1104846a3e8bSMatthew G. Knepley } 11059566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, e, &cone)); 110663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\draw[color=%s] (%" PetscInt_FMT "_%d) -- (%" PetscInt_FMT "_%d);\n", color, cone[0], rank, cone[1], rank)); 1107846a3e8bSMatthew G. Knepley } 1108846a3e8bSMatthew G. Knepley } else { 1109b7f6ffafSMatthew G. Knepley DMPolytopeType ct; 1110846a3e8bSMatthew G. Knepley 1111b7f6ffafSMatthew G. Knepley /* Drawing a 2D polygon */ 1112b7f6ffafSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1113fe1cc32dSStefano Zampini if (wp && !PetscBTLookup(wp, c - pStart)) continue; 11149566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &ct)); 1115b7f6ffafSMatthew G. Knepley if (ct == DM_POLYTOPE_SEG_PRISM_TENSOR || 1116b7f6ffafSMatthew G. Knepley ct == DM_POLYTOPE_TRI_PRISM_TENSOR || 1117b7f6ffafSMatthew G. Knepley ct == DM_POLYTOPE_QUAD_PRISM_TENSOR) { 1118b7f6ffafSMatthew G. Knepley const PetscInt *cone; 1119b7f6ffafSMatthew G. Knepley PetscInt coneSize, e; 1120b7f6ffafSMatthew G. Knepley 11219566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 11229566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 1123b7f6ffafSMatthew G. Knepley for (e = 0; e < coneSize; ++e) { 1124b7f6ffafSMatthew G. Knepley const PetscInt *econe; 1125b7f6ffafSMatthew G. Knepley 11269566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[e], &econe)); 112763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\draw[color=%s] (%" PetscInt_FMT "_%d) -- (%" PetscInt_FMT "_%d) -- (%" PetscInt_FMT "_%d);\n", colors[rank%numColors], econe[0], rank, cone[e], rank, econe[1], rank)); 1128b7f6ffafSMatthew G. Knepley } 1129b7f6ffafSMatthew G. Knepley } else { 1130b7f6ffafSMatthew G. Knepley PetscInt *closure = NULL; 1131b7f6ffafSMatthew G. Knepley PetscInt closureSize, Nv = 0, v; 1132b7f6ffafSMatthew G. Knepley 11339566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 1134846a3e8bSMatthew G. Knepley for (p = 0; p < closureSize*2; p += 2) { 1135846a3e8bSMatthew G. Knepley const PetscInt point = closure[p]; 1136846a3e8bSMatthew G. Knepley 1137b7f6ffafSMatthew G. Knepley if ((point >= vStart) && (point < vEnd)) closure[Nv++] = point; 1138846a3e8bSMatthew G. Knepley } 11399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\draw[color=%s] ", colors[rank%numColors])); 1140b7f6ffafSMatthew G. Knepley for (v = 0; v <= Nv; ++v) { 1141b7f6ffafSMatthew G. Knepley const PetscInt vertex = closure[v%Nv]; 1142b7f6ffafSMatthew G. Knepley 1143b7f6ffafSMatthew G. Knepley if (v > 0) { 1144b7f6ffafSMatthew G. Knepley if (plotEdges) { 1145b7f6ffafSMatthew G. Knepley const PetscInt *edge; 1146b7f6ffafSMatthew G. Knepley PetscInt endpoints[2], ne; 1147b7f6ffafSMatthew G. Knepley 1148b7f6ffafSMatthew G. Knepley endpoints[0] = closure[v-1]; endpoints[1] = vertex; 11499566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, 2, endpoints, &ne, &edge)); 115063a3b9bcSJacob Faibussowitsch PetscCheck(ne == 1,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find edge for vertices %" PetscInt_FMT ", %" PetscInt_FMT, endpoints[0], endpoints[1]); 115163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " -- (%" PetscInt_FMT "_%d) -- ", edge[0], rank)); 11529566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, 2, endpoints, &ne, &edge)); 1153b7f6ffafSMatthew G. Knepley } else { 11549566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " -- ")); 1155b7f6ffafSMatthew G. Knepley } 1156b7f6ffafSMatthew G. Knepley } 115763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "(%" PetscInt_FMT "_%d)", vertex, rank)); 1158b7f6ffafSMatthew G. Knepley } 11599566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ";\n")); 11609566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 1161846a3e8bSMatthew G. Knepley } 1162846a3e8bSMatthew G. Knepley } 1163b7f6ffafSMatthew G. Knepley } 11649566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1165846a3e8bSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1166846a3e8bSMatthew G. Knepley double ccoords[3] = {0.0, 0.0, 0.0}; 1167846a3e8bSMatthew G. Knepley PetscBool isLabeled = PETSC_FALSE; 1168846a3e8bSMatthew G. Knepley PetscInt *closure = NULL; 1169846a3e8bSMatthew G. Knepley PetscInt closureSize, dof, d, n = 0; 1170846a3e8bSMatthew G. Knepley 1171fe1cc32dSStefano Zampini if (wp && !PetscBTLookup(wp,c - pStart)) continue; 11729566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 11739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "\\path (")); 1174846a3e8bSMatthew G. Knepley for (p = 0; p < closureSize*2; p += 2) { 1175846a3e8bSMatthew G. Knepley const PetscInt point = closure[p]; 1176846a3e8bSMatthew G. Knepley PetscInt off; 1177846a3e8bSMatthew G. Knepley 1178846a3e8bSMatthew G. Knepley if ((point < vStart) || (point >= vEnd)) continue; 11799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, point, &dof)); 11809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, point, &off)); 1181846a3e8bSMatthew G. Knepley for (d = 0; d < dof; ++d) { 1182846a3e8bSMatthew G. Knepley tcoords[d] = (double) (scale*PetscRealPart(coords[off+d])); 1183846a3e8bSMatthew G. Knepley tcoords[d] = PetscAbs(tcoords[d]) < 1e-10 ? 0.0 : tcoords[d]; 1184846a3e8bSMatthew G. Knepley } 1185846a3e8bSMatthew G. Knepley /* Rotate coordinates since PGF makes z point out of the page instead of up */ 1186846a3e8bSMatthew G. Knepley if (dof == 3) {PetscReal tmp = tcoords[1]; tcoords[1] = tcoords[2]; tcoords[2] = -tmp;} 1187846a3e8bSMatthew G. Knepley for (d = 0; d < dof; ++d) {ccoords[d] += tcoords[d];} 1188846a3e8bSMatthew G. Knepley ++n; 1189846a3e8bSMatthew G. Knepley } 1190846a3e8bSMatthew G. Knepley for (d = 0; d < dof; ++d) {ccoords[d] /= n;} 11919566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 1192846a3e8bSMatthew G. Knepley for (d = 0; d < dof; ++d) { 11939566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ",")); 11949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "%g", (double) ccoords[d])); 1195846a3e8bSMatthew G. Knepley } 1196b7f6ffafSMatthew G. Knepley if (drawHasse) color = colors[depth%numColors]; 1197b7f6ffafSMatthew G. Knepley else color = colors[rank%numColors]; 1198846a3e8bSMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 1199846a3e8bSMatthew G. Knepley PetscInt val; 12009566063dSJacob Faibussowitsch PetscCall(DMGetLabelValue(dm, names[l], c, &val)); 1201846a3e8bSMatthew G. Knepley if (val >= 0) {color = lcolors[l%numLColors]; isLabeled = PETSC_TRUE; break;} 1202846a3e8bSMatthew G. Knepley } 1203b7f6ffafSMatthew G. Knepley if (drawNumbers[dim]) { 120463a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [draw,shape=circle,color=%s] {%" PetscInt_FMT "};\n", c, rank, color, c)); 1205b7f6ffafSMatthew G. Knepley } else if (drawColors[dim]) { 120663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [fill,inner sep=%dpt,shape=circle,color=%s] {};\n", c, rank, !isLabeled ? 1 : 2, color)); 1207b7f6ffafSMatthew G. Knepley } else { 120863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, ") node(%" PetscInt_FMT "_%d) [] {};\n", c, rank)); 1209846a3e8bSMatthew G. Knepley } 1210846a3e8bSMatthew G. Knepley } 12119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1212b7f6ffafSMatthew G. Knepley if (drawHasse) { 1213b7f6ffafSMatthew G. Knepley color = colors[depth%numColors]; 12149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Cells\n")); 12159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\foreach \\c in {\\cStart,...,\\cEnd}\n")); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "{\n")); 12179566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " \\node(\\c_%d) [draw,shape=circle,color=%s,minimum size = 6mm] at (\\cShift+\\c-\\cStart,0) {\\c};\n", rank, color)); 12189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "}\n")); 1219552f7358SJed Brown 1220b7f6ffafSMatthew G. Knepley color = colors[1%numColors]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Edges\n")); 12229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\foreach \\e in {\\eStart,...,\\eEnd}\n")); 12239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "{\n")); 12249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " \\node(\\e_%d) [draw,shape=circle,color=%s,minimum size = 6mm] at (\\eShift+\\e-\\eStart,1) {\\e};\n", rank, color)); 12259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "}\n")); 1226b7f6ffafSMatthew G. Knepley 1227b7f6ffafSMatthew G. Knepley color = colors[0%numColors]; 12289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%% Vertices\n")); 12299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\foreach \\v in {\\vStart,...,\\vEnd}\n")); 12309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "{\n")); 12319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " \\node(\\v_%d) [draw,shape=circle,color=%s,minimum size = 6mm] at (\\vShift+\\v-\\vStart,2) {\\v};\n", rank, color)); 12329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "}\n")); 1233b7f6ffafSMatthew G. Knepley 1234b7f6ffafSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 1235b7f6ffafSMatthew G. Knepley const PetscInt *cone; 1236b7f6ffafSMatthew G. Knepley PetscInt coneSize, cp; 1237b7f6ffafSMatthew G. Knepley 12389566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 12399566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1240b7f6ffafSMatthew G. Knepley for (cp = 0; cp < coneSize; ++cp) { 124163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\draw[->, shorten >=1pt] (%" PetscInt_FMT "_%d) -- (%" PetscInt_FMT "_%d);\n", cone[cp], rank, p, rank)); 1242552f7358SJed Brown } 12430588280cSMatthew G. Knepley } 12440588280cSMatthew G. Knepley } 12459566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 12479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\end{tikzpicture}\n")); 124863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\\end{document}\n")); 12499566063dSJacob Faibussowitsch for (l = 0; l < numLabels; ++l) PetscCall(PetscFree(names[l])); 12509566063dSJacob Faibussowitsch for (c = 0; c < numColors; ++c) PetscCall(PetscFree(colors[c])); 12519566063dSJacob Faibussowitsch for (c = 0; c < numLColors; ++c) PetscCall(PetscFree(lcolors[c])); 12529566063dSJacob Faibussowitsch PetscCall(PetscFree3(names, colors, lcolors)); 12539566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&wp)); 12540f7d6e4aSStefano Zampini } else if (format == PETSC_VIEWER_LOAD_BALANCE) { 12550f7d6e4aSStefano Zampini Vec cown,acown; 12560f7d6e4aSStefano Zampini VecScatter sct; 12570f7d6e4aSStefano Zampini ISLocalToGlobalMapping g2l; 12580f7d6e4aSStefano Zampini IS gid,acis; 12590f7d6e4aSStefano Zampini MPI_Comm comm,ncomm = MPI_COMM_NULL; 12600f7d6e4aSStefano Zampini MPI_Group ggroup,ngroup; 12610f7d6e4aSStefano Zampini PetscScalar *array,nid; 12620f7d6e4aSStefano Zampini const PetscInt *idxs; 12630f7d6e4aSStefano Zampini PetscInt *idxs2,*start,*adjacency,*work; 12640f7d6e4aSStefano Zampini PetscInt64 lm[3],gm[3]; 12650f7d6e4aSStefano Zampini PetscInt i,c,cStart,cEnd,cum,numVertices,ect,ectn,cellHeight; 12660f7d6e4aSStefano Zampini PetscMPIInt d1,d2,rank; 12670f7d6e4aSStefano Zampini 12689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 12699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 1270b674149eSJunchao Zhang #if defined(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY) 12719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_split_type(comm,MPI_COMM_TYPE_SHARED,rank,MPI_INFO_NULL,&ncomm)); 12720f7d6e4aSStefano Zampini #endif 12730f7d6e4aSStefano Zampini if (ncomm != MPI_COMM_NULL) { 12749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(comm,&ggroup)); 12759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(ncomm,&ngroup)); 12760f7d6e4aSStefano Zampini d1 = 0; 12779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_translate_ranks(ngroup,1,&d1,ggroup,&d2)); 12780f7d6e4aSStefano Zampini nid = d2; 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&ggroup)); 12809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&ngroup)); 12819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_free(&ncomm)); 12820f7d6e4aSStefano Zampini } else nid = 0.0; 12830f7d6e4aSStefano Zampini 12840f7d6e4aSStefano Zampini /* Get connectivity */ 12859566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm,&cellHeight)); 12869566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePartitionerGraph(dm,cellHeight,&numVertices,&start,&adjacency,&gid)); 12870f7d6e4aSStefano Zampini 12880f7d6e4aSStefano Zampini /* filter overlapped local cells */ 12899566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm,cellHeight,&cStart,&cEnd)); 12909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gid,&idxs)); 12919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(gid,&cum)); 12929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cum,&idxs2)); 12930f7d6e4aSStefano Zampini for (c = cStart, cum = 0; c < cEnd; c++) { 12940f7d6e4aSStefano Zampini if (idxs[c-cStart] < 0) continue; 12950f7d6e4aSStefano Zampini idxs2[cum++] = idxs[c-cStart]; 12960f7d6e4aSStefano Zampini } 12979566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gid,&idxs)); 129863a3b9bcSJacob Faibussowitsch PetscCheck(numVertices == cum,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unexpected %" PetscInt_FMT " != %" PetscInt_FMT,numVertices,cum); 12999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gid)); 13009566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm,numVertices,idxs2,PETSC_OWN_POINTER,&gid)); 13010f7d6e4aSStefano Zampini 13020f7d6e4aSStefano Zampini /* support for node-aware cell locality */ 13039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm,start[numVertices],adjacency,PETSC_USE_POINTER,&acis)); 13049566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF,start[numVertices],&acown)); 13059566063dSJacob Faibussowitsch PetscCall(VecCreateMPI(comm,numVertices,PETSC_DECIDE,&cown)); 13069566063dSJacob Faibussowitsch PetscCall(VecGetArray(cown,&array)); 13070f7d6e4aSStefano Zampini for (c = 0; c < numVertices; c++) array[c] = nid; 13089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cown,&array)); 13099566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(cown,acis,acown,NULL,&sct)); 13109566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sct,cown,acown,INSERT_VALUES,SCATTER_FORWARD)); 13119566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(sct,cown,acown,INSERT_VALUES,SCATTER_FORWARD)); 13129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&acis)); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sct)); 13149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cown)); 13150f7d6e4aSStefano Zampini 13160f7d6e4aSStefano Zampini /* compute edgeCut */ 13170f7d6e4aSStefano Zampini for (c = 0, cum = 0; c < numVertices; c++) cum = PetscMax(cum,start[c+1]-start[c]); 13189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cum,&work)); 13199566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(gid,&g2l)); 13209566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(g2l,ISLOCALTOGLOBALMAPPINGHASH)); 13219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gid)); 13229566063dSJacob Faibussowitsch PetscCall(VecGetArray(acown,&array)); 13230f7d6e4aSStefano Zampini for (c = 0, ect = 0, ectn = 0; c < numVertices; c++) { 13240f7d6e4aSStefano Zampini PetscInt totl; 13250f7d6e4aSStefano Zampini 13260f7d6e4aSStefano Zampini totl = start[c+1]-start[c]; 13279566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(g2l,IS_GTOLM_MASK,totl,adjacency+start[c],NULL,work)); 13280f7d6e4aSStefano Zampini for (i = 0; i < totl; i++) { 13290f7d6e4aSStefano Zampini if (work[i] < 0) { 13300f7d6e4aSStefano Zampini ect += 1; 13310f7d6e4aSStefano Zampini ectn += (array[i + start[c]] != nid) ? 0 : 1; 13320f7d6e4aSStefano Zampini } 13330f7d6e4aSStefano Zampini } 13340f7d6e4aSStefano Zampini } 13359566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 13369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(acown,&array)); 13370f7d6e4aSStefano Zampini lm[0] = numVertices > 0 ? numVertices : PETSC_MAX_INT; 13380f7d6e4aSStefano Zampini lm[1] = -numVertices; 13391c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lm,gm,2,MPIU_INT64,MPI_MIN,comm)); 134063a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," Cell balance: %.2f (max %" PetscInt_FMT ", min %" PetscInt_FMT,-((double)gm[1])/((double)gm[0]),-(PetscInt)gm[1],(PetscInt)gm[0])); 13410f7d6e4aSStefano Zampini lm[0] = ect; /* edgeCut */ 13420f7d6e4aSStefano Zampini lm[1] = ectn; /* node-aware edgeCut */ 13430f7d6e4aSStefano Zampini lm[2] = numVertices > 0 ? 0 : 1; /* empty processes */ 13441c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lm,gm,3,MPIU_INT64,MPI_SUM,comm)); 134563a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,", empty %" PetscInt_FMT ")\n",(PetscInt)gm[2])); 1346b674149eSJunchao Zhang #if defined(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY) 134763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," Edge Cut: %" PetscInt_FMT " (on node %.3f)\n",(PetscInt)(gm[0]/2),gm[0] ? ((double)(gm[1]))/((double)gm[0]) : 1.)); 13480f7d6e4aSStefano Zampini #else 134963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," Edge Cut: %" PetscInt_FMT " (on node %.3f)\n",(PetscInt)(gm[0]/2),0.0)); 13500f7d6e4aSStefano Zampini #endif 13519566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&g2l)); 13529566063dSJacob Faibussowitsch PetscCall(PetscFree(start)); 13539566063dSJacob Faibussowitsch PetscCall(PetscFree(adjacency)); 13549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&acown)); 1355552f7358SJed Brown } else { 1356412e9a14SMatthew G. Knepley const char *name; 1357d80ece95SMatthew G. Knepley PetscInt *sizes, *hybsizes, *ghostsizes; 1358412e9a14SMatthew G. Knepley PetscInt locDepth, depth, cellHeight, dim, d; 1359d80ece95SMatthew G. Knepley PetscInt pStart, pEnd, p, gcStart, gcEnd, gcNum; 1360ca7bf7eeSMatthew G. Knepley PetscInt numLabels, l, maxSize = 17; 13619318fe57SMatthew G. Knepley DMPolytopeType ct0 = DM_POLYTOPE_UNKNOWN; 1362412e9a14SMatthew G. Knepley MPI_Comm comm; 1363412e9a14SMatthew G. Knepley PetscMPIInt size, rank; 1364552f7358SJed Brown 13659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 13669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 13679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 13689566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 13699566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 13709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) dm, &name)); 137163a3b9bcSJacob Faibussowitsch if (name) PetscCall(PetscViewerASCIIPrintf(viewer, "%s in %" PetscInt_FMT " dimension%s:\n", name, dim, dim == 1 ? "" : "s")); 137263a3b9bcSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Mesh in %" PetscInt_FMT " dimension%s:\n", dim, dim == 1 ? "" : "s")); 137363a3b9bcSJacob Faibussowitsch if (cellHeight) PetscCall(PetscViewerASCIIPrintf(viewer, " Cells are at height %" PetscInt_FMT "\n", cellHeight)); 13749566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &locDepth)); 13751c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&locDepth, &depth, 1, MPIU_INT, MPI_MAX, comm)); 13769566063dSJacob Faibussowitsch PetscCall(DMPlexGetGhostCellStratum(dm, &gcStart, &gcEnd)); 1377d80ece95SMatthew G. Knepley gcNum = gcEnd - gcStart; 13789566063dSJacob Faibussowitsch if (size < maxSize) PetscCall(PetscCalloc3(size, &sizes, size, &hybsizes, size, &ghostsizes)); 13799566063dSJacob Faibussowitsch else PetscCall(PetscCalloc3(3, &sizes, 3, &hybsizes, 3, &ghostsizes)); 1380412e9a14SMatthew G. Knepley for (d = 0; d <= depth; d++) { 1381412e9a14SMatthew G. Knepley PetscInt Nc[2] = {0, 0}, ict; 1382412e9a14SMatthew G. Knepley 13839566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 13849566063dSJacob Faibussowitsch if (pStart < pEnd) PetscCall(DMPlexGetCellType(dm, pStart, &ct0)); 1385412e9a14SMatthew G. Knepley ict = ct0; 13869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&ict, 1, MPIU_INT, 0, comm)); 1387412e9a14SMatthew G. Knepley ct0 = (DMPolytopeType) ict; 1388412e9a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 1389412e9a14SMatthew G. Knepley DMPolytopeType ct; 1390412e9a14SMatthew G. Knepley 13919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 1392412e9a14SMatthew G. Knepley if (ct == ct0) ++Nc[0]; 1393412e9a14SMatthew G. Knepley else ++Nc[1]; 1394412e9a14SMatthew G. Knepley } 1395ca7bf7eeSMatthew G. Knepley if (size < maxSize) { 13969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Gather(&Nc[0], 1, MPIU_INT, sizes, 1, MPIU_INT, 0, comm)); 13979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Gather(&Nc[1], 1, MPIU_INT, hybsizes, 1, MPIU_INT, 0, comm)); 13989566063dSJacob Faibussowitsch if (d == depth) PetscCallMPI(MPI_Gather(&gcNum, 1, MPIU_INT, ghostsizes, 1, MPIU_INT, 0, comm)); 139963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " Number of %" PetscInt_FMT "-cells per rank:", (depth == 1) && d ? dim : d)); 1400834065abSMatthew G. Knepley for (p = 0; p < size; ++p) { 1401dd400576SPatrick Sanan if (rank == 0) { 140263a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT, sizes[p]+hybsizes[p])); 140363a3b9bcSJacob Faibussowitsch if (hybsizes[p] > 0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT ")", hybsizes[p])); 140463a3b9bcSJacob Faibussowitsch if (ghostsizes[p] > 0) PetscCall(PetscViewerASCIIPrintf(viewer, " [%" PetscInt_FMT "]", ghostsizes[p])); 1405834065abSMatthew G. Knepley } 1406cbb7f117SMark Adams } 1407ca7bf7eeSMatthew G. Knepley } else { 1408ca7bf7eeSMatthew G. Knepley PetscInt locMinMax[2]; 1409ca7bf7eeSMatthew G. Knepley 1410ca7bf7eeSMatthew G. Knepley locMinMax[0] = Nc[0]+Nc[1]; locMinMax[1] = Nc[0]+Nc[1]; 14119566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(comm, locMinMax, sizes)); 1412ca7bf7eeSMatthew G. Knepley locMinMax[0] = Nc[1]; locMinMax[1] = Nc[1]; 14139566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(comm, locMinMax, hybsizes)); 1414ca7bf7eeSMatthew G. Knepley if (d == depth) { 1415ca7bf7eeSMatthew G. Knepley locMinMax[0] = gcNum; locMinMax[1] = gcNum; 14169566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(comm, locMinMax, ghostsizes)); 1417ca7bf7eeSMatthew G. Knepley } 141863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " Min/Max of %" PetscInt_FMT "-cells per rank:", (depth == 1) && d ? dim : d)); 14199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %" PetscInt_FMT "/%" PetscInt_FMT, sizes[0], sizes[1])); 14209566063dSJacob Faibussowitsch if (hybsizes[0] > 0) PetscCall(PetscViewerASCIIPrintf(viewer, " (%" PetscInt_FMT "/%" PetscInt_FMT ")", hybsizes[0], hybsizes[1])); 14219566063dSJacob Faibussowitsch if (ghostsizes[0] > 0) PetscCall(PetscViewerASCIIPrintf(viewer, " [%" PetscInt_FMT "/%" PetscInt_FMT "]", ghostsizes[0], ghostsizes[1])); 1422ca7bf7eeSMatthew G. Knepley } 14239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 1424552f7358SJed Brown } 14259566063dSJacob Faibussowitsch PetscCall(PetscFree3(sizes, hybsizes, ghostsizes)); 14269318fe57SMatthew G. Knepley { 14279318fe57SMatthew G. Knepley const PetscReal *maxCell; 14289318fe57SMatthew G. Knepley const PetscReal *L; 14299318fe57SMatthew G. Knepley const DMBoundaryType *bd; 14309318fe57SMatthew G. Knepley PetscBool per, localized; 14319318fe57SMatthew G. Knepley 14329566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &per, &maxCell, &L, &bd)); 14339566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocalized(dm, &localized)); 14349318fe57SMatthew G. Knepley if (per) { 14359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Periodic mesh (")); 14369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 14379318fe57SMatthew G. Knepley for (d = 0; d < dim; ++d) { 14389566063dSJacob Faibussowitsch if (bd && d > 0) PetscCall(PetscViewerASCIIPrintf(viewer, ", ")); 14399566063dSJacob Faibussowitsch if (bd) PetscCall(PetscViewerASCIIPrintf(viewer, "%s", DMBoundaryTypes[bd[d]])); 14409318fe57SMatthew G. Knepley } 14419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, ") coordinates %s\n", localized ? "localized" : "not localized")); 14429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 14439318fe57SMatthew G. Knepley } 14449318fe57SMatthew G. Knepley } 14459566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 14469566063dSJacob Faibussowitsch if (numLabels) PetscCall(PetscViewerASCIIPrintf(viewer, "Labels:\n")); 1447a57dd577SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1448a57dd577SMatthew G Knepley DMLabel label; 1449a57dd577SMatthew G Knepley const char *name; 1450a57dd577SMatthew G Knepley IS valueIS; 1451a57dd577SMatthew G Knepley const PetscInt *values; 1452a57dd577SMatthew G Knepley PetscInt numValues, v; 1453a57dd577SMatthew G Knepley 14549566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 14559566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 14569566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 145763a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %s: %" PetscInt_FMT " strata with value/size (", name, numValues)); 14589566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 14599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 14609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_FALSE)); 1461a57dd577SMatthew G Knepley for (v = 0; v < numValues; ++v) { 1462a57dd577SMatthew G Knepley PetscInt size; 1463a57dd577SMatthew G Knepley 14649566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &size)); 14659566063dSJacob Faibussowitsch if (v > 0) PetscCall(PetscViewerASCIIPrintf(viewer, ", ")); 146663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "%" PetscInt_FMT " (%" PetscInt_FMT ")", values[v], size)); 1467a57dd577SMatthew G Knepley } 14689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, ")\n")); 14699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer, PETSC_TRUE)); 14709566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 14719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1472a57dd577SMatthew G Knepley } 1473c1cad2e7SMatthew G. Knepley { 1474c1cad2e7SMatthew G. Knepley char **labelNames; 1475c1cad2e7SMatthew G. Knepley PetscInt Nl = numLabels; 1476c1cad2e7SMatthew G. Knepley PetscBool flg; 1477c1cad2e7SMatthew G. Knepley 14789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nl, &labelNames)); 14799566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetStringArray(((PetscObject) dm)->options, ((PetscObject) dm)->prefix, "-dm_plex_view_labels", labelNames, &Nl, &flg)); 1480c1cad2e7SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 1481c1cad2e7SMatthew G. Knepley DMLabel label; 1482c1cad2e7SMatthew G. Knepley 14839566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, labelNames[l], &flg)); 1484c1cad2e7SMatthew G. Knepley if (flg) { 14859566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, labelNames[l], &label)); 14869566063dSJacob Faibussowitsch PetscCall(DMLabelView(label, viewer)); 1487c1cad2e7SMatthew G. Knepley } 14889566063dSJacob Faibussowitsch PetscCall(PetscFree(labelNames[l])); 1489c1cad2e7SMatthew G. Knepley } 14909566063dSJacob Faibussowitsch PetscCall(PetscFree(labelNames)); 1491c1cad2e7SMatthew G. Knepley } 149234aa8a36SMatthew G. Knepley /* If no fields are specified, people do not want to see adjacency */ 149334aa8a36SMatthew G. Knepley if (dm->Nf) { 149434aa8a36SMatthew G. Knepley PetscInt f; 149534aa8a36SMatthew G. Knepley 149634aa8a36SMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 149734aa8a36SMatthew G. Knepley const char *name; 149834aa8a36SMatthew G. Knepley 14999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName(dm->fields[f].disc, &name)); 15009566063dSJacob Faibussowitsch if (numLabels) PetscCall(PetscViewerASCIIPrintf(viewer, "Field %s:\n", name)); 15019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 15029566063dSJacob Faibussowitsch if (dm->fields[f].label) PetscCall(DMLabelView(dm->fields[f].label, viewer)); 150334aa8a36SMatthew G. Knepley if (dm->fields[f].adjacency[0]) { 15049566063dSJacob Faibussowitsch if (dm->fields[f].adjacency[1]) PetscCall(PetscViewerASCIIPrintf(viewer, "adjacency FVM++\n")); 15059566063dSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "adjacency FVM\n")); 150634aa8a36SMatthew G. Knepley } else { 15079566063dSJacob Faibussowitsch if (dm->fields[f].adjacency[1]) PetscCall(PetscViewerASCIIPrintf(viewer, "adjacency FEM\n")); 15089566063dSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "adjacency FUNKY\n")); 150934aa8a36SMatthew G. Knepley } 15109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 151134aa8a36SMatthew G. Knepley } 151234aa8a36SMatthew G. Knepley } 15139566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dm, &cdm)); 15148e7ff633SMatthew G. Knepley if (cdm) { 15159566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 15169566063dSJacob Faibussowitsch PetscCall(DMPlexView_Ascii(cdm, viewer)); 15179566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 15188e7ff633SMatthew G. Knepley } 1519552f7358SJed Brown } 1520552f7358SJed Brown PetscFunctionReturn(0); 1521552f7358SJed Brown } 1522552f7358SJed Brown 1523e5c487bfSMatthew G. Knepley static PetscErrorCode DMPlexDrawCell(DM dm, PetscDraw draw, PetscInt cell, const PetscScalar coords[]) 1524e5c487bfSMatthew G. Knepley { 1525e5c487bfSMatthew G. Knepley DMPolytopeType ct; 1526e5c487bfSMatthew G. Knepley PetscMPIInt rank; 1527a12d352dSMatthew G. Knepley PetscInt cdim; 1528e5c487bfSMatthew G. Knepley 1529e5c487bfSMatthew G. Knepley PetscFunctionBegin; 15309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 15319566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cell, &ct)); 15329566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1533e5c487bfSMatthew G. Knepley switch (ct) { 1534a12d352dSMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 1535a12d352dSMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 1536a12d352dSMatthew G. Knepley switch (cdim) { 1537a12d352dSMatthew G. Knepley case 1: 1538a12d352dSMatthew G. Knepley { 1539a12d352dSMatthew G. Knepley const PetscReal y = 0.5; /* TODO Put it in the middle of the viewport */ 1540a12d352dSMatthew G. Knepley const PetscReal dy = 0.05; /* TODO Make it a fraction of the total length */ 1541a12d352dSMatthew G. Knepley 15429566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), y, PetscRealPart(coords[1]), y, PETSC_DRAW_BLACK)); 15439566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), y+dy, PetscRealPart(coords[0]), y-dy, PETSC_DRAW_BLACK)); 15449566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[1]), y+dy, PetscRealPart(coords[1]), y-dy, PETSC_DRAW_BLACK)); 1545a12d352dSMatthew G. Knepley } 1546a12d352dSMatthew G. Knepley break; 1547a12d352dSMatthew G. Knepley case 2: 1548a12d352dSMatthew G. Knepley { 1549a12d352dSMatthew G. Knepley const PetscReal dx = (PetscRealPart(coords[3]) - PetscRealPart(coords[1])); 1550a12d352dSMatthew G. Knepley const PetscReal dy = (PetscRealPart(coords[2]) - PetscRealPart(coords[0])); 1551a12d352dSMatthew G. Knepley const PetscReal l = 0.1/PetscSqrtReal(dx*dx + dy*dy); 1552a12d352dSMatthew G. Knepley 15539566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PETSC_DRAW_BLACK)); 15549566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0])+l*dx, PetscRealPart(coords[1])+l*dy, PetscRealPart(coords[0])-l*dx, PetscRealPart(coords[1])-l*dy, PETSC_DRAW_BLACK)); 15559566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[2])+l*dx, PetscRealPart(coords[3])+l*dy, PetscRealPart(coords[2])-l*dx, PetscRealPart(coords[3])-l*dy, PETSC_DRAW_BLACK)); 1556a12d352dSMatthew G. Knepley } 1557a12d352dSMatthew G. Knepley break; 155863a3b9bcSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot draw cells of dimension %" PetscInt_FMT, cdim); 1559a12d352dSMatthew G. Knepley } 1560a12d352dSMatthew G. Knepley break; 1561e5c487bfSMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 15629566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), 1563e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 1564e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 15655f80ce2aSJacob Faibussowitsch PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2)); 15669566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PETSC_DRAW_BLACK)); 15679566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), PETSC_DRAW_BLACK)); 15689566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[4]), PetscRealPart(coords[5]), PetscRealPart(coords[0]), PetscRealPart(coords[1]), PETSC_DRAW_BLACK)); 1569e5c487bfSMatthew G. Knepley break; 1570e5c487bfSMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 15719566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), 1572e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 1573e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 15745f80ce2aSJacob Faibussowitsch PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2)); 15759566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), PetscRealPart(coords[6]), PetscRealPart(coords[7]), 1576e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 1577e5c487bfSMatthew G. Knepley PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2, 15785f80ce2aSJacob Faibussowitsch PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2)); 15799566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[0]), PetscRealPart(coords[1]), PetscRealPart(coords[2]), PetscRealPart(coords[3]), PETSC_DRAW_BLACK)); 15809566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[2]), PetscRealPart(coords[3]), PetscRealPart(coords[4]), PetscRealPart(coords[5]), PETSC_DRAW_BLACK)); 15819566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[4]), PetscRealPart(coords[5]), PetscRealPart(coords[6]), PetscRealPart(coords[7]), PETSC_DRAW_BLACK)); 15829566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, PetscRealPart(coords[6]), PetscRealPart(coords[7]), PetscRealPart(coords[0]), PetscRealPart(coords[1]), PETSC_DRAW_BLACK)); 1583e5c487bfSMatthew G. Knepley break; 158498921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot draw cells of type %s", DMPolytopeTypes[ct]); 1585e5c487bfSMatthew G. Knepley } 1586e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 1587e5c487bfSMatthew G. Knepley } 1588e5c487bfSMatthew G. Knepley 1589e5c487bfSMatthew G. Knepley static PetscErrorCode DMPlexDrawCellHighOrder(DM dm, PetscDraw draw, PetscInt cell, const PetscScalar coords[], PetscInt edgeDiv, PetscReal refCoords[], PetscReal edgeCoords[]) 1590e5c487bfSMatthew G. Knepley { 1591e5c487bfSMatthew G. Knepley DMPolytopeType ct; 1592e5c487bfSMatthew G. Knepley PetscReal centroid[2] = {0., 0.}; 1593e5c487bfSMatthew G. Knepley PetscMPIInt rank; 1594e5c487bfSMatthew G. Knepley PetscInt fillColor, v, e, d; 1595e5c487bfSMatthew G. Knepley 1596e5c487bfSMatthew G. Knepley PetscFunctionBegin; 15979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 15989566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cell, &ct)); 1599e5c487bfSMatthew G. Knepley fillColor = PETSC_DRAW_WHITE + rank % (PETSC_DRAW_BASIC_COLORS-2) + 2; 1600e5c487bfSMatthew G. Knepley switch (ct) { 1601e5c487bfSMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 1602e5c487bfSMatthew G. Knepley { 1603e5c487bfSMatthew G. Knepley PetscReal refVertices[6] = {-1., -1., 1., -1., -1., 1.}; 1604e5c487bfSMatthew G. Knepley 1605e5c487bfSMatthew G. Knepley for (v = 0; v < 3; ++v) {centroid[0] += PetscRealPart(coords[v*2+0])/3.;centroid[1] += PetscRealPart(coords[v*2+1])/3.;} 1606e5c487bfSMatthew G. Knepley for (e = 0; e < 3; ++e) { 1607e5c487bfSMatthew G. Knepley refCoords[0] = refVertices[e*2+0]; 1608e5c487bfSMatthew G. Knepley refCoords[1] = refVertices[e*2+1]; 1609e5c487bfSMatthew G. Knepley for (d = 1; d <= edgeDiv; ++d) { 1610e5c487bfSMatthew G. Knepley refCoords[d*2+0] = refCoords[0] + (refVertices[(e+1)%3 * 2 + 0] - refCoords[0])*d/edgeDiv; 1611e5c487bfSMatthew G. Knepley refCoords[d*2+1] = refCoords[1] + (refVertices[(e+1)%3 * 2 + 1] - refCoords[1])*d/edgeDiv; 1612e5c487bfSMatthew G. Knepley } 16139566063dSJacob Faibussowitsch PetscCall(DMPlexReferenceToCoordinates(dm, cell, edgeDiv+1, refCoords, edgeCoords)); 1614e5c487bfSMatthew G. Knepley for (d = 0; d < edgeDiv; ++d) { 16159566063dSJacob Faibussowitsch PetscCall(PetscDrawTriangle(draw, centroid[0], centroid[1], edgeCoords[d*2+0], edgeCoords[d*2+1], edgeCoords[(d+1)*2+0], edgeCoords[(d+1)*2+1], fillColor, fillColor, fillColor)); 16169566063dSJacob Faibussowitsch PetscCall(PetscDrawLine(draw, edgeCoords[d*2+0], edgeCoords[d*2+1], edgeCoords[(d+1)*2+0], edgeCoords[(d+1)*2+1], PETSC_DRAW_BLACK)); 1617e5c487bfSMatthew G. Knepley } 1618e5c487bfSMatthew G. Knepley } 1619e5c487bfSMatthew G. Knepley } 1620e5c487bfSMatthew G. Knepley break; 162198921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot draw cells of type %s", DMPolytopeTypes[ct]); 1622e5c487bfSMatthew G. Knepley } 1623e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 1624e5c487bfSMatthew G. Knepley } 1625e5c487bfSMatthew G. Knepley 16267cd05799SMatthew G. Knepley static PetscErrorCode DMPlexView_Draw(DM dm, PetscViewer viewer) 1627e412dcbdSMatthew G. Knepley { 1628e412dcbdSMatthew G. Knepley PetscDraw draw; 1629e412dcbdSMatthew G. Knepley DM cdm; 1630e412dcbdSMatthew G. Knepley PetscSection coordSection; 1631e412dcbdSMatthew G. Knepley Vec coordinates; 1632e412dcbdSMatthew G. Knepley const PetscScalar *coords; 163329494db1SLisandro Dalcin PetscReal xyl[2],xyr[2],bound[4] = {PETSC_MAX_REAL, PETSC_MAX_REAL, PETSC_MIN_REAL, PETSC_MIN_REAL}; 1634e5c487bfSMatthew G. Knepley PetscReal *refCoords, *edgeCoords; 1635e5c487bfSMatthew G. Knepley PetscBool isnull, drawAffine = PETSC_TRUE; 1636e5c487bfSMatthew G. Knepley PetscInt dim, vStart, vEnd, cStart, cEnd, c, N, edgeDiv = 4; 1637e412dcbdSMatthew G. Knepley 1638e412dcbdSMatthew G. Knepley PetscFunctionBegin; 16399566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 164063a3b9bcSJacob Faibussowitsch PetscCheck(dim <= 2,PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Cannot draw meshes of dimension %" PetscInt_FMT, dim); 16419566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(((PetscObject) dm)->options, ((PetscObject) dm)->prefix, "-dm_view_draw_affine", &drawAffine, NULL)); 16429566063dSJacob Faibussowitsch if (!drawAffine) PetscCall(PetscMalloc2((edgeDiv+1)*dim, &refCoords, (edgeDiv+1)*dim, &edgeCoords)); 16439566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &cdm)); 16449566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(cdm, &coordSection)); 16459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 16469566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 16479566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 1648e412dcbdSMatthew G. Knepley 16499566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 16509566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 1651e412dcbdSMatthew G. Knepley if (isnull) PetscFunctionReturn(0); 16529566063dSJacob Faibussowitsch PetscCall(PetscDrawSetTitle(draw, "Mesh")); 1653e412dcbdSMatthew G. Knepley 16549566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(coordinates, &N)); 16559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordinates, &coords)); 1656e412dcbdSMatthew G. Knepley for (c = 0; c < N; c += dim) { 16570c81f2a8SMatthew G. Knepley bound[0] = PetscMin(bound[0], PetscRealPart(coords[c])); bound[2] = PetscMax(bound[2], PetscRealPart(coords[c])); 16580c81f2a8SMatthew G. Knepley bound[1] = PetscMin(bound[1], PetscRealPart(coords[c+1])); bound[3] = PetscMax(bound[3], PetscRealPart(coords[c+1])); 1659e412dcbdSMatthew G. Knepley } 16609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordinates, &coords)); 16611c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&bound[0],xyl,2,MPIU_REAL,MPIU_MIN,PetscObjectComm((PetscObject)dm))); 16621c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&bound[2],xyr,2,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)dm))); 16639566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw, xyl[0], xyl[1], xyr[0], xyr[1])); 16649566063dSJacob Faibussowitsch PetscCall(PetscDrawClear(draw)); 1665e412dcbdSMatthew G. Knepley 1666cf3064d3SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1667cf3064d3SMatthew G. Knepley PetscScalar *coords = NULL; 1668ba2698f1SMatthew G. Knepley PetscInt numCoords; 1669cf3064d3SMatthew G. Knepley 16709566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosureAtDepth_Internal(dm, coordSection, coordinates, c, 0, &numCoords, &coords)); 1671e5c487bfSMatthew G. Knepley if (drawAffine) { 16729566063dSJacob Faibussowitsch PetscCall(DMPlexDrawCell(dm, draw, c, coords)); 1673e5c487bfSMatthew G. Knepley } else { 16749566063dSJacob Faibussowitsch PetscCall(DMPlexDrawCellHighOrder(dm, draw, c, coords, edgeDiv, refCoords, edgeCoords)); 1675cf3064d3SMatthew G. Knepley } 16769566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, coordSection, coordinates, c, &numCoords, &coords)); 1677cf3064d3SMatthew G. Knepley } 16789566063dSJacob Faibussowitsch if (!drawAffine) PetscCall(PetscFree2(refCoords, edgeCoords)); 16799566063dSJacob Faibussowitsch PetscCall(PetscDrawFlush(draw)); 16809566063dSJacob Faibussowitsch PetscCall(PetscDrawPause(draw)); 16819566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 1682e412dcbdSMatthew G. Knepley PetscFunctionReturn(0); 1683e412dcbdSMatthew G. Knepley } 1684e412dcbdSMatthew G. Knepley 16851e50132fSMatthew G. Knepley #if defined(PETSC_HAVE_EXODUSII) 16861e50132fSMatthew G. Knepley #include <exodusII.h> 16876823f3c5SBlaise Bourdin #include <petscviewerexodusii.h> 16881e50132fSMatthew G. Knepley #endif 16891e50132fSMatthew G. Knepley 1690552f7358SJed Brown PetscErrorCode DMView_Plex(DM dm, PetscViewer viewer) 1691552f7358SJed Brown { 16921e50132fSMatthew G. Knepley PetscBool iascii, ishdf5, isvtk, isdraw, flg, isglvis, isexodus; 1693002a2709SMatthew G. Knepley char name[PETSC_MAX_PATH_LEN]; 1694552f7358SJed Brown 1695552f7358SJed Brown PetscFunctionBegin; 1696552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1697552f7358SJed Brown PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 16989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERASCII, &iascii)); 16999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERVTK, &isvtk)); 17009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 17019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERDRAW, &isdraw)); 17029566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERGLVIS, &isglvis)); 17039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWEREXODUSII, &isexodus)); 1704552f7358SJed Brown if (iascii) { 17058135c375SStefano Zampini PetscViewerFormat format; 17069566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 17078135c375SStefano Zampini if (format == PETSC_VIEWER_ASCII_GLVIS) { 17089566063dSJacob Faibussowitsch PetscCall(DMPlexView_GLVis(dm, viewer)); 17098135c375SStefano Zampini } else { 17109566063dSJacob Faibussowitsch PetscCall(DMPlexView_Ascii(dm, viewer)); 17118135c375SStefano Zampini } 1712c6ccd67eSMatthew G. Knepley } else if (ishdf5) { 1713c6ccd67eSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 17149566063dSJacob Faibussowitsch PetscCall(DMPlexView_HDF5_Internal(dm, viewer)); 1715c6ccd67eSMatthew G. Knepley #else 1716c6ccd67eSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1717552f7358SJed Brown #endif 1718e412dcbdSMatthew G. Knepley } else if (isvtk) { 17199566063dSJacob Faibussowitsch PetscCall(DMPlexVTKWriteAll((PetscObject) dm,viewer)); 1720e412dcbdSMatthew G. Knepley } else if (isdraw) { 17219566063dSJacob Faibussowitsch PetscCall(DMPlexView_Draw(dm, viewer)); 17228135c375SStefano Zampini } else if (isglvis) { 17239566063dSJacob Faibussowitsch PetscCall(DMPlexView_GLVis(dm, viewer)); 17241e50132fSMatthew G. Knepley #if defined(PETSC_HAVE_EXODUSII) 17251e50132fSMatthew G. Knepley } else if (isexodus) { 17266823f3c5SBlaise Bourdin /* 17276823f3c5SBlaise Bourdin exodusII requires that all sets be part of exactly one cell set. 17286823f3c5SBlaise Bourdin If the dm does not have a "Cell Sets" label defined, we create one 17296823f3c5SBlaise Bourdin with ID 1, containig all cells. 17306823f3c5SBlaise Bourdin Note that if the Cell Sets label is defined but does not cover all cells, 17316823f3c5SBlaise Bourdin we may still have a problem. This should probably be checked here or in the viewer; 17326823f3c5SBlaise Bourdin */ 17336823f3c5SBlaise Bourdin PetscInt numCS; 17349566063dSJacob Faibussowitsch PetscCall(DMGetLabelSize(dm,"Cell Sets",&numCS)); 17356823f3c5SBlaise Bourdin if (!numCS) { 17361e50132fSMatthew G. Knepley PetscInt cStart, cEnd, c; 17379566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, "Cell Sets")); 17389566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 17399566063dSJacob Faibussowitsch for (c = cStart; c < cEnd; ++c) PetscCall(DMSetLabelValue(dm, "Cell Sets", c, 1)); 17406823f3c5SBlaise Bourdin } 17419566063dSJacob Faibussowitsch PetscCall(DMView_PlexExodusII(dm, viewer)); 17421e50132fSMatthew G. Knepley #endif 174362201deeSVaclav Hapla } else { 174498921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Viewer type %s not yet supported for DMPlex writing", ((PetscObject)viewer)->type_name); 1745fcf6c8fdSToby Isaac } 1746cb3ba0daSMatthew G. Knepley /* Optionally view the partition */ 17479566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options, ((PetscObject) dm)->prefix, "-dm_partition_view", &flg)); 1748cb3ba0daSMatthew G. Knepley if (flg) { 1749cb3ba0daSMatthew G. Knepley Vec ranks; 17509566063dSJacob Faibussowitsch PetscCall(DMPlexCreateRankField(dm, &ranks)); 17519566063dSJacob Faibussowitsch PetscCall(VecView(ranks, viewer)); 17529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&ranks)); 1753cb3ba0daSMatthew G. Knepley } 1754002a2709SMatthew G. Knepley /* Optionally view a label */ 17559566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetString(((PetscObject) dm)->options, ((PetscObject) dm)->prefix, "-dm_label_view", name, sizeof(name), &flg)); 1756002a2709SMatthew G. Knepley if (flg) { 1757002a2709SMatthew G. Knepley DMLabel label; 1758002a2709SMatthew G. Knepley Vec val; 1759002a2709SMatthew G. Knepley 17609566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 176128b400f6SJacob Faibussowitsch PetscCheck(label,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Label %s provided to -dm_label_view does not exist in this DM", name); 17629566063dSJacob Faibussowitsch PetscCall(DMPlexCreateLabelField(dm, label, &val)); 17639566063dSJacob Faibussowitsch PetscCall(VecView(val, viewer)); 17649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&val)); 1765002a2709SMatthew G. Knepley } 1766552f7358SJed Brown PetscFunctionReturn(0); 1767552f7358SJed Brown } 1768552f7358SJed Brown 17697f96f51bSksagiyam /*@ 17707f96f51bSksagiyam DMPlexTopologyView - Saves a DMPlex topology into a file 17717f96f51bSksagiyam 17727f96f51bSksagiyam Collective on DM 17737f96f51bSksagiyam 17747f96f51bSksagiyam Input Parameters: 17757f96f51bSksagiyam + dm - The DM whose topology is to be saved 17767f96f51bSksagiyam - viewer - The PetscViewer for saving 17777f96f51bSksagiyam 17787f96f51bSksagiyam Level: advanced 17797f96f51bSksagiyam 1780db781477SPatrick Sanan .seealso: `DMView()`, `DMPlexCoordinatesView()`, `DMPlexLabelsView()`, `DMPlexTopologyLoad()` 17817f96f51bSksagiyam @*/ 17827f96f51bSksagiyam PetscErrorCode DMPlexTopologyView(DM dm, PetscViewer viewer) 17837f96f51bSksagiyam { 17847f96f51bSksagiyam PetscBool ishdf5; 17857f96f51bSksagiyam 17867f96f51bSksagiyam PetscFunctionBegin; 17877f96f51bSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17887f96f51bSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 17899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 17909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_TopologyView,viewer,0,0,0)); 17917f96f51bSksagiyam if (ishdf5) { 17927f96f51bSksagiyam #if defined(PETSC_HAVE_HDF5) 17937f96f51bSksagiyam PetscViewerFormat format; 17949566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 17957f96f51bSksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 17967f96f51bSksagiyam IS globalPointNumbering; 17977f96f51bSksagiyam 17989566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &globalPointNumbering)); 17999566063dSJacob Faibussowitsch PetscCall(DMPlexTopologyView_HDF5_Internal(dm, globalPointNumbering, viewer)); 18009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&globalPointNumbering)); 180198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 output.", PetscViewerFormats[format]); 18027f96f51bSksagiyam #else 18037f96f51bSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 18047f96f51bSksagiyam #endif 18057f96f51bSksagiyam } 18069566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_TopologyView,viewer,0,0,0)); 18077f96f51bSksagiyam PetscFunctionReturn(0); 18087f96f51bSksagiyam } 18097f96f51bSksagiyam 181077b8e257Sksagiyam /*@ 181177b8e257Sksagiyam DMPlexCoordinatesView - Saves DMPlex coordinates into a file 181277b8e257Sksagiyam 181377b8e257Sksagiyam Collective on DM 181477b8e257Sksagiyam 181577b8e257Sksagiyam Input Parameters: 181677b8e257Sksagiyam + dm - The DM whose coordinates are to be saved 181777b8e257Sksagiyam - viewer - The PetscViewer for saving 181877b8e257Sksagiyam 181977b8e257Sksagiyam Level: advanced 182077b8e257Sksagiyam 1821db781477SPatrick Sanan .seealso: `DMView()`, `DMPlexTopologyView()`, `DMPlexLabelsView()`, `DMPlexCoordinatesLoad()` 182277b8e257Sksagiyam @*/ 182377b8e257Sksagiyam PetscErrorCode DMPlexCoordinatesView(DM dm, PetscViewer viewer) 182477b8e257Sksagiyam { 182577b8e257Sksagiyam PetscBool ishdf5; 182677b8e257Sksagiyam 182777b8e257Sksagiyam PetscFunctionBegin; 182877b8e257Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 182977b8e257Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 18309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 18319566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CoordinatesView,viewer,0,0,0)); 183277b8e257Sksagiyam if (ishdf5) { 183377b8e257Sksagiyam #if defined(PETSC_HAVE_HDF5) 183477b8e257Sksagiyam PetscViewerFormat format; 18359566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 183677b8e257Sksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 18379566063dSJacob Faibussowitsch PetscCall(DMPlexCoordinatesView_HDF5_Internal(dm, viewer)); 183898921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 183977b8e257Sksagiyam #else 184077b8e257Sksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 184177b8e257Sksagiyam #endif 184277b8e257Sksagiyam } 18439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CoordinatesView,viewer,0,0,0)); 184477b8e257Sksagiyam PetscFunctionReturn(0); 184577b8e257Sksagiyam } 184677b8e257Sksagiyam 1847bd6565f1Sksagiyam /*@ 1848bd6565f1Sksagiyam DMPlexLabelsView - Saves DMPlex labels into a file 1849bd6565f1Sksagiyam 1850bd6565f1Sksagiyam Collective on DM 1851bd6565f1Sksagiyam 1852bd6565f1Sksagiyam Input Parameters: 1853bd6565f1Sksagiyam + dm - The DM whose labels are to be saved 1854bd6565f1Sksagiyam - viewer - The PetscViewer for saving 1855bd6565f1Sksagiyam 1856bd6565f1Sksagiyam Level: advanced 1857bd6565f1Sksagiyam 1858db781477SPatrick Sanan .seealso: `DMView()`, `DMPlexTopologyView()`, `DMPlexCoordinatesView()`, `DMPlexLabelsLoad()` 1859bd6565f1Sksagiyam @*/ 1860bd6565f1Sksagiyam PetscErrorCode DMPlexLabelsView(DM dm, PetscViewer viewer) 1861bd6565f1Sksagiyam { 1862bd6565f1Sksagiyam PetscBool ishdf5; 1863bd6565f1Sksagiyam 1864bd6565f1Sksagiyam PetscFunctionBegin; 1865bd6565f1Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1866bd6565f1Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 18679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 18689566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_LabelsView,viewer,0,0,0)); 1869bd6565f1Sksagiyam if (ishdf5) { 1870bd6565f1Sksagiyam #if defined(PETSC_HAVE_HDF5) 1871bd6565f1Sksagiyam IS globalPointNumbering; 1872bd6565f1Sksagiyam PetscViewerFormat format; 1873bd6565f1Sksagiyam 18749566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1875bd6565f1Sksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 18769566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &globalPointNumbering)); 18779566063dSJacob Faibussowitsch PetscCall(DMPlexLabelsView_HDF5_Internal(dm, globalPointNumbering, viewer)); 18789566063dSJacob Faibussowitsch PetscCall(ISDestroy(&globalPointNumbering)); 187998921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 1880bd6565f1Sksagiyam #else 1881bd6565f1Sksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1882bd6565f1Sksagiyam #endif 1883bd6565f1Sksagiyam } 18849566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_LabelsView,viewer,0,0,0)); 1885bd6565f1Sksagiyam PetscFunctionReturn(0); 1886bd6565f1Sksagiyam } 1887bd6565f1Sksagiyam 1888021affd3Sksagiyam /*@ 1889021affd3Sksagiyam DMPlexSectionView - Saves a section associated with a DMPlex 1890021affd3Sksagiyam 1891021affd3Sksagiyam Collective on DM 1892021affd3Sksagiyam 1893021affd3Sksagiyam Input Parameters: 1894021affd3Sksagiyam + dm - The DM that contains the topology on which the section to be saved is defined 1895021affd3Sksagiyam . viewer - The PetscViewer for saving 1896021affd3Sksagiyam - sectiondm - The DM that contains the section to be saved 1897021affd3Sksagiyam 1898021affd3Sksagiyam Level: advanced 1899021affd3Sksagiyam 1900021affd3Sksagiyam Notes: 1901021affd3Sksagiyam This function is a wrapper around PetscSectionView(); in addition to the raw section, it saves information that associates the section points to the topology (dm) points. When the topology (dm) and the section are later loaded with DMPlexTopologyLoad() and DMPlexSectionLoad(), respectively, this information is used to match section points with topology points. 1902021affd3Sksagiyam 1903021affd3Sksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 1904021affd3Sksagiyam 1905db781477SPatrick Sanan .seealso: `DMView()`, `DMPlexTopologyView()`, `DMPlexCoordinatesView()`, `DMPlexLabelsView()`, `DMPlexGlobalVectorView()`, `DMPlexLocalVectorView()`, `PetscSectionView()`, `DMPlexSectionLoad()` 1906021affd3Sksagiyam @*/ 1907021affd3Sksagiyam PetscErrorCode DMPlexSectionView(DM dm, PetscViewer viewer, DM sectiondm) 1908021affd3Sksagiyam { 1909021affd3Sksagiyam PetscBool ishdf5; 1910021affd3Sksagiyam 1911021affd3Sksagiyam PetscFunctionBegin; 1912021affd3Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1913021affd3Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1914021affd3Sksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 19159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5)); 19169566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_SectionView,viewer,0,0,0)); 1917021affd3Sksagiyam if (ishdf5) { 1918021affd3Sksagiyam #if defined(PETSC_HAVE_HDF5) 19199566063dSJacob Faibussowitsch PetscCall(DMPlexSectionView_HDF5_Internal(dm, viewer, sectiondm)); 1920021affd3Sksagiyam #else 1921021affd3Sksagiyam SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 1922021affd3Sksagiyam #endif 1923021affd3Sksagiyam } 19249566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_SectionView,viewer,0,0,0)); 1925021affd3Sksagiyam PetscFunctionReturn(0); 1926021affd3Sksagiyam } 1927021affd3Sksagiyam 19283e97647fSksagiyam /*@ 19293e97647fSksagiyam DMPlexGlobalVectorView - Saves a global vector 19303e97647fSksagiyam 19313e97647fSksagiyam Collective on DM 19323e97647fSksagiyam 19333e97647fSksagiyam Input Parameters: 19343e97647fSksagiyam + dm - The DM that represents the topology 19353e97647fSksagiyam . viewer - The PetscViewer to save data with 19363e97647fSksagiyam . sectiondm - The DM that contains the global section on which vec is defined 19373e97647fSksagiyam - vec - The global vector to be saved 19383e97647fSksagiyam 19393e97647fSksagiyam Level: advanced 19403e97647fSksagiyam 19413e97647fSksagiyam Notes: 19423e97647fSksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 19433e97647fSksagiyam 19443e97647fSksagiyam Typical calling sequence 19453e97647fSksagiyam $ DMCreate(PETSC_COMM_WORLD, &dm); 19463e97647fSksagiyam $ DMSetType(dm, DMPLEX); 19473e97647fSksagiyam $ PetscObjectSetName((PetscObject)dm, "topologydm_name"); 19483e97647fSksagiyam $ DMClone(dm, §iondm); 19493e97647fSksagiyam $ PetscObjectSetName((PetscObject)sectiondm, "sectiondm_name"); 19503e97647fSksagiyam $ PetscSectionCreate(PETSC_COMM_WORLD, §ion); 19513e97647fSksagiyam $ DMPlexGetChart(sectiondm, &pStart, &pEnd); 19523e97647fSksagiyam $ PetscSectionSetChart(section, pStart, pEnd); 19533e97647fSksagiyam $ PetscSectionSetUp(section); 19543e97647fSksagiyam $ DMSetLocalSection(sectiondm, section); 19553e97647fSksagiyam $ PetscSectionDestroy(§ion); 19563e97647fSksagiyam $ DMGetGlobalVector(sectiondm, &vec); 19573e97647fSksagiyam $ PetscObjectSetName((PetscObject)vec, "vec_name"); 19583e97647fSksagiyam $ DMPlexTopologyView(dm, viewer); 19593e97647fSksagiyam $ DMPlexSectionView(dm, viewer, sectiondm); 19603e97647fSksagiyam $ DMPlexGlobalVectorView(dm, viewer, sectiondm, vec); 19613e97647fSksagiyam $ DMRestoreGlobalVector(sectiondm, &vec); 19623e97647fSksagiyam $ DMDestroy(§iondm); 19633e97647fSksagiyam $ DMDestroy(&dm); 19643e97647fSksagiyam 1965db781477SPatrick Sanan .seealso: `DMPlexTopologyView()`, `DMPlexSectionView()`, `DMPlexLocalVectorView()`, `DMPlexGlobalVectorLoad()`, `DMPlexLocalVectorLoad()` 19663e97647fSksagiyam @*/ 19673e97647fSksagiyam PetscErrorCode DMPlexGlobalVectorView(DM dm, PetscViewer viewer, DM sectiondm, Vec vec) 19683e97647fSksagiyam { 19693e97647fSksagiyam PetscBool ishdf5; 19703e97647fSksagiyam 19713e97647fSksagiyam PetscFunctionBegin; 19723e97647fSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 19733e97647fSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 19743e97647fSksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 19753e97647fSksagiyam PetscValidHeaderSpecific(vec, VEC_CLASSID, 4); 19763e97647fSksagiyam /* Check consistency */ 19773e97647fSksagiyam { 19783e97647fSksagiyam PetscSection section; 19793e97647fSksagiyam PetscBool includesConstraints; 19803e97647fSksagiyam PetscInt m, m1; 19813e97647fSksagiyam 19829566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &m1)); 19839566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(sectiondm, §ion)); 19849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetIncludesConstraints(section, &includesConstraints)); 19859566063dSJacob Faibussowitsch if (includesConstraints) PetscCall(PetscSectionGetStorageSize(section, &m)); 19869566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetConstrainedStorageSize(section, &m)); 198763a3b9bcSJacob Faibussowitsch PetscCheck(m1 == m,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Global vector size (%" PetscInt_FMT ") != global section storage size (%" PetscInt_FMT ")", m1, m); 19883e97647fSksagiyam } 19899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 19909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_GlobalVectorView,viewer,0,0,0)); 19913e97647fSksagiyam if (ishdf5) { 19923e97647fSksagiyam #if defined(PETSC_HAVE_HDF5) 19939566063dSJacob Faibussowitsch PetscCall(DMPlexGlobalVectorView_HDF5_Internal(dm, viewer, sectiondm, vec)); 19943e97647fSksagiyam #else 19953e97647fSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 19963e97647fSksagiyam #endif 19973e97647fSksagiyam } 19989566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_GlobalVectorView,viewer,0,0,0)); 19993e97647fSksagiyam PetscFunctionReturn(0); 20003e97647fSksagiyam } 20013e97647fSksagiyam 20023e97647fSksagiyam /*@ 20033e97647fSksagiyam DMPlexLocalVectorView - Saves a local vector 20043e97647fSksagiyam 20053e97647fSksagiyam Collective on DM 20063e97647fSksagiyam 20073e97647fSksagiyam Input Parameters: 20083e97647fSksagiyam + dm - The DM that represents the topology 20093e97647fSksagiyam . viewer - The PetscViewer to save data with 20103e97647fSksagiyam . sectiondm - The DM that contains the local section on which vec is defined; may be the same as dm 20113e97647fSksagiyam - vec - The local vector to be saved 20123e97647fSksagiyam 20133e97647fSksagiyam Level: advanced 20143e97647fSksagiyam 20153e97647fSksagiyam Notes: 20163e97647fSksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 20173e97647fSksagiyam 20183e97647fSksagiyam Typical calling sequence 20193e97647fSksagiyam $ DMCreate(PETSC_COMM_WORLD, &dm); 20203e97647fSksagiyam $ DMSetType(dm, DMPLEX); 20213e97647fSksagiyam $ PetscObjectSetName((PetscObject)dm, "topologydm_name"); 20223e97647fSksagiyam $ DMClone(dm, §iondm); 20233e97647fSksagiyam $ PetscObjectSetName((PetscObject)sectiondm, "sectiondm_name"); 20243e97647fSksagiyam $ PetscSectionCreate(PETSC_COMM_WORLD, §ion); 20253e97647fSksagiyam $ DMPlexGetChart(sectiondm, &pStart, &pEnd); 20263e97647fSksagiyam $ PetscSectionSetChart(section, pStart, pEnd); 20273e97647fSksagiyam $ PetscSectionSetUp(section); 20283e97647fSksagiyam $ DMSetLocalSection(sectiondm, section); 20293e97647fSksagiyam $ DMGetLocalVector(sectiondm, &vec); 20303e97647fSksagiyam $ PetscObjectSetName((PetscObject)vec, "vec_name"); 20313e97647fSksagiyam $ DMPlexTopologyView(dm, viewer); 20323e97647fSksagiyam $ DMPlexSectionView(dm, viewer, sectiondm); 20333e97647fSksagiyam $ DMPlexLocalVectorView(dm, viewer, sectiondm, vec); 20343e97647fSksagiyam $ DMRestoreLocalVector(sectiondm, &vec); 20353e97647fSksagiyam $ DMDestroy(§iondm); 20363e97647fSksagiyam $ DMDestroy(&dm); 20373e97647fSksagiyam 2038db781477SPatrick Sanan .seealso: `DMPlexTopologyView()`, `DMPlexSectionView()`, `DMPlexGlobalVectorView()`, `DMPlexGlobalVectorLoad()`, `DMPlexLocalVectorLoad()` 20393e97647fSksagiyam @*/ 20403e97647fSksagiyam PetscErrorCode DMPlexLocalVectorView(DM dm, PetscViewer viewer, DM sectiondm, Vec vec) 20413e97647fSksagiyam { 20423e97647fSksagiyam PetscBool ishdf5; 20433e97647fSksagiyam 20443e97647fSksagiyam PetscFunctionBegin; 20453e97647fSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20463e97647fSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 20473e97647fSksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 20483e97647fSksagiyam PetscValidHeaderSpecific(vec, VEC_CLASSID, 4); 20493e97647fSksagiyam /* Check consistency */ 20503e97647fSksagiyam { 20513e97647fSksagiyam PetscSection section; 20523e97647fSksagiyam PetscBool includesConstraints; 20533e97647fSksagiyam PetscInt m, m1; 20543e97647fSksagiyam 20559566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &m1)); 20569566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(sectiondm, §ion)); 20579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetIncludesConstraints(section, &includesConstraints)); 20589566063dSJacob Faibussowitsch if (includesConstraints) PetscCall(PetscSectionGetStorageSize(section, &m)); 20599566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetConstrainedStorageSize(section, &m)); 206063a3b9bcSJacob Faibussowitsch PetscCheck(m1 == m,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Local vector size (%" PetscInt_FMT ") != local section storage size (%" PetscInt_FMT ")", m1, m); 20613e97647fSksagiyam } 20629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 20639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_LocalVectorView,viewer,0,0,0)); 20643e97647fSksagiyam if (ishdf5) { 20653e97647fSksagiyam #if defined(PETSC_HAVE_HDF5) 20669566063dSJacob Faibussowitsch PetscCall(DMPlexLocalVectorView_HDF5_Internal(dm, viewer, sectiondm, vec)); 20673e97647fSksagiyam #else 20683e97647fSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 20693e97647fSksagiyam #endif 20703e97647fSksagiyam } 20719566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_LocalVectorView,viewer,0,0,0)); 20723e97647fSksagiyam PetscFunctionReturn(0); 20733e97647fSksagiyam } 20743e97647fSksagiyam 20752c40f234SMatthew G. Knepley PetscErrorCode DMLoad_Plex(DM dm, PetscViewer viewer) 20762c40f234SMatthew G. Knepley { 2077d4f5a9a0SVaclav Hapla PetscBool ishdf5; 20782c40f234SMatthew G. Knepley 20792c40f234SMatthew G. Knepley PetscFunctionBegin; 20802c40f234SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20812c40f234SMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 20829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 2083d4f5a9a0SVaclav Hapla if (ishdf5) { 20842c40f234SMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 20859c48423bSVaclav Hapla PetscViewerFormat format; 20869566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 20879c48423bSVaclav Hapla if (format == PETSC_VIEWER_HDF5_XDMF || format == PETSC_VIEWER_HDF5_VIZ) { 20889566063dSJacob Faibussowitsch PetscCall(DMPlexLoad_HDF5_Xdmf_Internal(dm, viewer)); 2089509517efSVaclav Hapla } else if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 20909566063dSJacob Faibussowitsch PetscCall(DMPlexLoad_HDF5_Internal(dm, viewer)); 209198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 2092b458e8f1SJose E. Roman PetscFunctionReturn(0); 20932c40f234SMatthew G. Knepley #else 20942c40f234SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 2095552f7358SJed Brown #endif 209698921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Viewer type %s not yet supported for DMPlex loading", ((PetscObject)viewer)->type_name); 2097552f7358SJed Brown } 2098552f7358SJed Brown 2099ea8e1828Sksagiyam /*@ 2100ea8e1828Sksagiyam DMPlexTopologyLoad - Loads a topology into a DMPlex 2101ea8e1828Sksagiyam 2102ea8e1828Sksagiyam Collective on DM 2103ea8e1828Sksagiyam 2104ea8e1828Sksagiyam Input Parameters: 2105ea8e1828Sksagiyam + dm - The DM into which the topology is loaded 2106ea8e1828Sksagiyam - viewer - The PetscViewer for the saved topology 2107ea8e1828Sksagiyam 2108dec9e869Sksagiyam Output Parameters: 2109f84dd6b4Sksagiyam . globalToLocalPointSF - The PetscSF that pushes points in [0, N) to the associated points in the loaded plex, where N is the global number of points; NULL if unneeded 2110dec9e869Sksagiyam 2111ea8e1828Sksagiyam Level: advanced 2112ea8e1828Sksagiyam 2113db781477SPatrick Sanan .seealso: `DMLoad()`, `DMPlexCoordinatesLoad()`, `DMPlexLabelsLoad()`, `DMView()`, `PetscViewerHDF5Open()`, `PetscViewerPushFormat()` 2114ea8e1828Sksagiyam @*/ 2115f84dd6b4Sksagiyam PetscErrorCode DMPlexTopologyLoad(DM dm, PetscViewer viewer, PetscSF *globalToLocalPointSF) 2116ea8e1828Sksagiyam { 2117ea8e1828Sksagiyam PetscBool ishdf5; 2118ea8e1828Sksagiyam 2119ea8e1828Sksagiyam PetscFunctionBegin; 2120ea8e1828Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2121ea8e1828Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 2122f84dd6b4Sksagiyam if (globalToLocalPointSF) PetscValidPointer(globalToLocalPointSF, 3); 21239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 21249566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_TopologyLoad,viewer,0,0,0)); 2125ea8e1828Sksagiyam if (ishdf5) { 2126ea8e1828Sksagiyam #if defined(PETSC_HAVE_HDF5) 2127ea8e1828Sksagiyam PetscViewerFormat format; 21289566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 2129ea8e1828Sksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 21309566063dSJacob Faibussowitsch PetscCall(DMPlexTopologyLoad_HDF5_Internal(dm, viewer, globalToLocalPointSF)); 213198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 2132ea8e1828Sksagiyam #else 2133ea8e1828Sksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 2134ea8e1828Sksagiyam #endif 2135ea8e1828Sksagiyam } 21369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_TopologyLoad,viewer,0,0,0)); 2137ea8e1828Sksagiyam PetscFunctionReturn(0); 2138ea8e1828Sksagiyam } 2139ea8e1828Sksagiyam 21403e701f1cSksagiyam /*@ 21413e701f1cSksagiyam DMPlexCoordinatesLoad - Loads coordinates into a DMPlex 21423e701f1cSksagiyam 21433e701f1cSksagiyam Collective on DM 21443e701f1cSksagiyam 21453e701f1cSksagiyam Input Parameters: 21463e701f1cSksagiyam + dm - The DM into which the coordinates are loaded 2147c9ad657eSksagiyam . viewer - The PetscViewer for the saved coordinates 2148c9ad657eSksagiyam - globalToLocalPointSF - The SF returned by DMPlexTopologyLoad() when loading dm from viewer 21493e701f1cSksagiyam 21503e701f1cSksagiyam Level: advanced 21513e701f1cSksagiyam 2152db781477SPatrick Sanan .seealso: `DMLoad()`, `DMPlexTopologyLoad()`, `DMPlexLabelsLoad()`, `DMView()`, `PetscViewerHDF5Open()`, `PetscViewerPushFormat()` 21533e701f1cSksagiyam @*/ 2154c9ad657eSksagiyam PetscErrorCode DMPlexCoordinatesLoad(DM dm, PetscViewer viewer, PetscSF globalToLocalPointSF) 21553e701f1cSksagiyam { 21563e701f1cSksagiyam PetscBool ishdf5; 21573e701f1cSksagiyam 21583e701f1cSksagiyam PetscFunctionBegin; 21593e701f1cSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21603e701f1cSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 2161c9ad657eSksagiyam PetscValidHeaderSpecific(globalToLocalPointSF, PETSCSF_CLASSID, 3); 21629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 21639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CoordinatesLoad,viewer,0,0,0)); 21643e701f1cSksagiyam if (ishdf5) { 21653e701f1cSksagiyam #if defined(PETSC_HAVE_HDF5) 21663e701f1cSksagiyam PetscViewerFormat format; 21679566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 21683e701f1cSksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 21699566063dSJacob Faibussowitsch PetscCall(DMPlexCoordinatesLoad_HDF5_Internal(dm, viewer, globalToLocalPointSF)); 217098921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 21713e701f1cSksagiyam #else 21723e701f1cSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 21733e701f1cSksagiyam #endif 21743e701f1cSksagiyam } 21759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CoordinatesLoad,viewer,0,0,0)); 21763e701f1cSksagiyam PetscFunctionReturn(0); 21773e701f1cSksagiyam } 21783e701f1cSksagiyam 2179b08ad5deSksagiyam /*@ 2180b08ad5deSksagiyam DMPlexLabelsLoad - Loads labels into a DMPlex 2181b08ad5deSksagiyam 2182b08ad5deSksagiyam Collective on DM 2183b08ad5deSksagiyam 2184b08ad5deSksagiyam Input Parameters: 2185b08ad5deSksagiyam + dm - The DM into which the labels are loaded 2186e6368b79SVaclav Hapla . viewer - The PetscViewer for the saved labels 2187e6368b79SVaclav Hapla - globalToLocalPointSF - The SF returned by DMPlexTopologyLoad() when loading dm from viewer 2188b08ad5deSksagiyam 2189b08ad5deSksagiyam Level: advanced 2190b08ad5deSksagiyam 2191e6368b79SVaclav Hapla Notes: 2192e6368b79SVaclav Hapla The PetscSF argument must not be NULL if the DM is distributed, otherwise an error occurs. 2193e6368b79SVaclav Hapla 2194db781477SPatrick Sanan .seealso: `DMLoad()`, `DMPlexTopologyLoad()`, `DMPlexCoordinatesLoad()`, `DMView()`, `PetscViewerHDF5Open()`, `PetscViewerPushFormat()` 2195b08ad5deSksagiyam @*/ 2196e6368b79SVaclav Hapla PetscErrorCode DMPlexLabelsLoad(DM dm, PetscViewer viewer, PetscSF globalToLocalPointSF) 2197b08ad5deSksagiyam { 2198b08ad5deSksagiyam PetscBool ishdf5; 2199b08ad5deSksagiyam 2200b08ad5deSksagiyam PetscFunctionBegin; 2201b08ad5deSksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2202b08ad5deSksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 2203e6368b79SVaclav Hapla if (globalToLocalPointSF) PetscValidHeaderSpecific(globalToLocalPointSF, PETSCSF_CLASSID, 3); 22049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 22059566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_LabelsLoad,viewer,0,0,0)); 2206b08ad5deSksagiyam if (ishdf5) { 2207b08ad5deSksagiyam #if defined(PETSC_HAVE_HDF5) 2208b08ad5deSksagiyam PetscViewerFormat format; 2209b08ad5deSksagiyam 22109566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 2211b08ad5deSksagiyam if (format == PETSC_VIEWER_HDF5_PETSC || format == PETSC_VIEWER_DEFAULT || format == PETSC_VIEWER_NATIVE) { 22129566063dSJacob Faibussowitsch PetscCall(DMPlexLabelsLoad_HDF5_Internal(dm, viewer, globalToLocalPointSF)); 221398921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "PetscViewerFormat %s not supported for HDF5 input.", PetscViewerFormats[format]); 2214b08ad5deSksagiyam #else 2215b08ad5deSksagiyam SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 2216b08ad5deSksagiyam #endif 2217b08ad5deSksagiyam } 22189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_LabelsLoad,viewer,0,0,0)); 2219b08ad5deSksagiyam PetscFunctionReturn(0); 2220b08ad5deSksagiyam } 2221b08ad5deSksagiyam 2222f84dd6b4Sksagiyam /*@ 2223f84dd6b4Sksagiyam DMPlexSectionLoad - Loads section into a DMPlex 2224f84dd6b4Sksagiyam 2225f84dd6b4Sksagiyam Collective on DM 2226f84dd6b4Sksagiyam 2227f84dd6b4Sksagiyam Input Parameters: 2228f84dd6b4Sksagiyam + dm - The DM that represents the topology 2229f84dd6b4Sksagiyam . viewer - The PetscViewer that represents the on-disk section (sectionA) 2230f84dd6b4Sksagiyam . sectiondm - The DM into which the on-disk section (sectionA) is migrated 2231f84dd6b4Sksagiyam - globalToLocalPointSF - The SF returned by DMPlexTopologyLoad() when loading dm from viewer 2232f84dd6b4Sksagiyam 2233f84dd6b4Sksagiyam Output Parameters 2234f84dd6b4Sksagiyam + globalDofSF - The SF that migrates any on-disk Vec data associated with sectionA into a global Vec associated with the sectiondm's global section (NULL if not needed) 2235f84dd6b4Sksagiyam - localDofSF - The SF that migrates any on-disk Vec data associated with sectionA into a local Vec associated with the sectiondm's local section (NULL if not needed) 2236f84dd6b4Sksagiyam 2237f84dd6b4Sksagiyam Level: advanced 2238f84dd6b4Sksagiyam 2239f84dd6b4Sksagiyam Notes: 2240f84dd6b4Sksagiyam This function is a wrapper around PetscSectionLoad(); it loads, in addition to the raw section, a list of global point numbers that associates each on-disk section point with a global point number in [0, NX), where NX is the number of topology points in dm. Noting that globalToLocalPointSF associates each topology point in dm with a global number in [0, NX), one can readily establish an association of the on-disk section points with the topology points. 2241f84dd6b4Sksagiyam 2242f84dd6b4Sksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 2243f84dd6b4Sksagiyam 2244f84dd6b4Sksagiyam The output parameter, globalDofSF (localDofSF), can later be used with DMPlexGlobalVectorLoad() (DMPlexLocalVectorLoad()) to load on-disk vectors into global (local) vectors associated with sectiondm's global (local) section. 2245f84dd6b4Sksagiyam 2246f84dd6b4Sksagiyam Example using 2 processes: 2247f84dd6b4Sksagiyam $ NX (number of points on dm): 4 2248f84dd6b4Sksagiyam $ sectionA : the on-disk section 2249f84dd6b4Sksagiyam $ vecA : a vector associated with sectionA 2250f84dd6b4Sksagiyam $ sectionB : sectiondm's local section constructed in this function 2251f84dd6b4Sksagiyam $ vecB (local) : a vector associated with sectiondm's local section 2252f84dd6b4Sksagiyam $ vecB (global) : a vector associated with sectiondm's global section 2253f84dd6b4Sksagiyam $ 2254f84dd6b4Sksagiyam $ rank 0 rank 1 2255f84dd6b4Sksagiyam $ vecA (global) : [.0 .4 .1 | .2 .3] <- to be loaded in DMPlexGlobalVectorLoad() or DMPlexLocalVectorLoad() 2256f84dd6b4Sksagiyam $ sectionA->atlasOff : 0 2 | 1 <- loaded in PetscSectionLoad() 2257f84dd6b4Sksagiyam $ sectionA->atlasDof : 1 3 | 1 <- loaded in PetscSectionLoad() 2258f84dd6b4Sksagiyam $ sectionA's global point numbers: 0 2 | 3 <- loaded in DMPlexSectionLoad() 2259f84dd6b4Sksagiyam $ [0, NX) : 0 1 | 2 3 <- conceptual partition used in globalToLocalPointSF 2260f84dd6b4Sksagiyam $ sectionB's global point numbers: 0 1 3 | 3 2 <- associated with [0, NX) by globalToLocalPointSF 2261f84dd6b4Sksagiyam $ sectionB->atlasDof : 1 0 1 | 1 3 2262f84dd6b4Sksagiyam $ sectionB->atlasOff (no perm) : 0 1 1 | 0 1 2263f84dd6b4Sksagiyam $ vecB (local) : [.0 .4] | [.4 .1 .2 .3] <- to be constructed by calling DMPlexLocalVectorLoad() with localDofSF 2264f84dd6b4Sksagiyam $ vecB (global) : [.0 .4 | .1 .2 .3] <- to be constructed by calling DMPlexGlobalVectorLoad() with globalDofSF 2265f84dd6b4Sksagiyam $ 2266f84dd6b4Sksagiyam $ where "|" represents a partition of loaded data, and global point 3 is assumed to be owned by rank 0. 2267f84dd6b4Sksagiyam 2268db781477SPatrick Sanan .seealso: `DMLoad()`, `DMPlexTopologyLoad()`, `DMPlexCoordinatesLoad()`, `DMPlexLabelsLoad()`, `DMPlexGlobalVectorLoad()`, `DMPlexLocalVectorLoad()`, `PetscSectionLoad()`, `DMPlexSectionView()` 2269f84dd6b4Sksagiyam @*/ 2270f84dd6b4Sksagiyam PetscErrorCode DMPlexSectionLoad(DM dm, PetscViewer viewer, DM sectiondm, PetscSF globalToLocalPointSF, PetscSF *globalDofSF, PetscSF *localDofSF) 2271f84dd6b4Sksagiyam { 2272f84dd6b4Sksagiyam PetscBool ishdf5; 2273f84dd6b4Sksagiyam 2274f84dd6b4Sksagiyam PetscFunctionBegin; 2275f84dd6b4Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2276f84dd6b4Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 2277f84dd6b4Sksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 2278f84dd6b4Sksagiyam PetscValidHeaderSpecific(globalToLocalPointSF, PETSCSF_CLASSID, 4); 2279f84dd6b4Sksagiyam if (globalDofSF) PetscValidPointer(globalDofSF, 5); 2280f84dd6b4Sksagiyam if (localDofSF) PetscValidPointer(localDofSF, 6); 22819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5)); 22829566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_SectionLoad,viewer,0,0,0)); 2283f84dd6b4Sksagiyam if (ishdf5) { 2284f84dd6b4Sksagiyam #if defined(PETSC_HAVE_HDF5) 22859566063dSJacob Faibussowitsch PetscCall(DMPlexSectionLoad_HDF5_Internal(dm, viewer, sectiondm, globalToLocalPointSF, globalDofSF, localDofSF)); 2286f84dd6b4Sksagiyam #else 2287f84dd6b4Sksagiyam SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 2288f84dd6b4Sksagiyam #endif 2289f84dd6b4Sksagiyam } 22909566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_SectionLoad,viewer,0,0,0)); 2291f84dd6b4Sksagiyam PetscFunctionReturn(0); 2292f84dd6b4Sksagiyam } 2293f84dd6b4Sksagiyam 22948be3dfe1Sksagiyam /*@ 22958be3dfe1Sksagiyam DMPlexGlobalVectorLoad - Loads on-disk vector data into a global vector 22968be3dfe1Sksagiyam 22978be3dfe1Sksagiyam Collective on DM 22988be3dfe1Sksagiyam 22998be3dfe1Sksagiyam Input Parameters: 23008be3dfe1Sksagiyam + dm - The DM that represents the topology 23018be3dfe1Sksagiyam . viewer - The PetscViewer that represents the on-disk vector data 23028be3dfe1Sksagiyam . sectiondm - The DM that contains the global section on which vec is defined 23038be3dfe1Sksagiyam . sf - The SF that migrates the on-disk vector data into vec 23048be3dfe1Sksagiyam - vec - The global vector to set values of 23058be3dfe1Sksagiyam 23068be3dfe1Sksagiyam Level: advanced 23078be3dfe1Sksagiyam 23088be3dfe1Sksagiyam Notes: 23098be3dfe1Sksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 23108be3dfe1Sksagiyam 23118be3dfe1Sksagiyam Typical calling sequence 23128be3dfe1Sksagiyam $ DMCreate(PETSC_COMM_WORLD, &dm); 23138be3dfe1Sksagiyam $ DMSetType(dm, DMPLEX); 23148be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)dm, "topologydm_name"); 23158be3dfe1Sksagiyam $ DMPlexTopologyLoad(dm, viewer, &sfX); 23168be3dfe1Sksagiyam $ DMClone(dm, §iondm); 23178be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)sectiondm, "sectiondm_name"); 23188be3dfe1Sksagiyam $ DMPlexSectionLoad(dm, viewer, sectiondm, sfX, &gsf, NULL); 23198be3dfe1Sksagiyam $ DMGetGlobalVector(sectiondm, &vec); 23208be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)vec, "vec_name"); 23218be3dfe1Sksagiyam $ DMPlexGlobalVectorLoad(dm, viewer, sectiondm, gsf, vec); 23228be3dfe1Sksagiyam $ DMRestoreGlobalVector(sectiondm, &vec); 23238be3dfe1Sksagiyam $ PetscSFDestroy(&gsf); 23248be3dfe1Sksagiyam $ PetscSFDestroy(&sfX); 23258be3dfe1Sksagiyam $ DMDestroy(§iondm); 23268be3dfe1Sksagiyam $ DMDestroy(&dm); 23278be3dfe1Sksagiyam 2328db781477SPatrick Sanan .seealso: `DMPlexTopologyLoad()`, `DMPlexSectionLoad()`, `DMPlexLocalVectorLoad()`, `DMPlexGlobalVectorView()`, `DMPlexLocalVectorView()` 23298be3dfe1Sksagiyam @*/ 23308be3dfe1Sksagiyam PetscErrorCode DMPlexGlobalVectorLoad(DM dm, PetscViewer viewer, DM sectiondm, PetscSF sf, Vec vec) 23318be3dfe1Sksagiyam { 23328be3dfe1Sksagiyam PetscBool ishdf5; 23338be3dfe1Sksagiyam 23348be3dfe1Sksagiyam PetscFunctionBegin; 23358be3dfe1Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23368be3dfe1Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 23378be3dfe1Sksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 23388be3dfe1Sksagiyam PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 4); 23398be3dfe1Sksagiyam PetscValidHeaderSpecific(vec, VEC_CLASSID, 5); 23408be3dfe1Sksagiyam /* Check consistency */ 23418be3dfe1Sksagiyam { 23428be3dfe1Sksagiyam PetscSection section; 23438be3dfe1Sksagiyam PetscBool includesConstraints; 23448be3dfe1Sksagiyam PetscInt m, m1; 23458be3dfe1Sksagiyam 23469566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &m1)); 23479566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(sectiondm, §ion)); 23489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetIncludesConstraints(section, &includesConstraints)); 23499566063dSJacob Faibussowitsch if (includesConstraints) PetscCall(PetscSectionGetStorageSize(section, &m)); 23509566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetConstrainedStorageSize(section, &m)); 235163a3b9bcSJacob Faibussowitsch PetscCheck(m1 == m,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Global vector size (%" PetscInt_FMT ") != global section storage size (%" PetscInt_FMT ")", m1, m); 23528be3dfe1Sksagiyam } 23539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5)); 23549566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_GlobalVectorLoad,viewer,0,0,0)); 23558be3dfe1Sksagiyam if (ishdf5) { 23568be3dfe1Sksagiyam #if defined(PETSC_HAVE_HDF5) 23579566063dSJacob Faibussowitsch PetscCall(DMPlexVecLoad_HDF5_Internal(dm, viewer, sectiondm, sf, vec)); 23588be3dfe1Sksagiyam #else 23598be3dfe1Sksagiyam SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 23608be3dfe1Sksagiyam #endif 23618be3dfe1Sksagiyam } 23629566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_GlobalVectorLoad,viewer,0,0,0)); 23638be3dfe1Sksagiyam PetscFunctionReturn(0); 23648be3dfe1Sksagiyam } 23658be3dfe1Sksagiyam 23668be3dfe1Sksagiyam /*@ 23678be3dfe1Sksagiyam DMPlexLocalVectorLoad - Loads on-disk vector data into a local vector 23688be3dfe1Sksagiyam 23698be3dfe1Sksagiyam Collective on DM 23708be3dfe1Sksagiyam 23718be3dfe1Sksagiyam Input Parameters: 23728be3dfe1Sksagiyam + dm - The DM that represents the topology 23738be3dfe1Sksagiyam . viewer - The PetscViewer that represents the on-disk vector data 23748be3dfe1Sksagiyam . sectiondm - The DM that contains the local section on which vec is defined 23758be3dfe1Sksagiyam . sf - The SF that migrates the on-disk vector data into vec 23768be3dfe1Sksagiyam - vec - The local vector to set values of 23778be3dfe1Sksagiyam 23788be3dfe1Sksagiyam Level: advanced 23798be3dfe1Sksagiyam 23808be3dfe1Sksagiyam Notes: 23818be3dfe1Sksagiyam In general dm and sectiondm are two different objects, the former carrying the topology and the latter carrying the section, and have been given a topology name and a section name, respectively, with PetscObjectSetName(). In practice, however, they can be the same object if it carries both topology and section; in that case the name of the object is used as both the topology name and the section name. 23828be3dfe1Sksagiyam 23838be3dfe1Sksagiyam Typical calling sequence 23848be3dfe1Sksagiyam $ DMCreate(PETSC_COMM_WORLD, &dm); 23858be3dfe1Sksagiyam $ DMSetType(dm, DMPLEX); 23868be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)dm, "topologydm_name"); 23878be3dfe1Sksagiyam $ DMPlexTopologyLoad(dm, viewer, &sfX); 23888be3dfe1Sksagiyam $ DMClone(dm, §iondm); 23898be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)sectiondm, "sectiondm_name"); 23908be3dfe1Sksagiyam $ DMPlexSectionLoad(dm, viewer, sectiondm, sfX, NULL, &lsf); 23918be3dfe1Sksagiyam $ DMGetLocalVector(sectiondm, &vec); 23928be3dfe1Sksagiyam $ PetscObjectSetName((PetscObject)vec, "vec_name"); 23938be3dfe1Sksagiyam $ DMPlexLocalVectorLoad(dm, viewer, sectiondm, lsf, vec); 23948be3dfe1Sksagiyam $ DMRestoreLocalVector(sectiondm, &vec); 23958be3dfe1Sksagiyam $ PetscSFDestroy(&lsf); 23968be3dfe1Sksagiyam $ PetscSFDestroy(&sfX); 23978be3dfe1Sksagiyam $ DMDestroy(§iondm); 23988be3dfe1Sksagiyam $ DMDestroy(&dm); 23998be3dfe1Sksagiyam 2400db781477SPatrick Sanan .seealso: `DMPlexTopologyLoad()`, `DMPlexSectionLoad()`, `DMPlexGlobalVectorLoad()`, `DMPlexGlobalVectorView()`, `DMPlexLocalVectorView()` 24018be3dfe1Sksagiyam @*/ 24028be3dfe1Sksagiyam PetscErrorCode DMPlexLocalVectorLoad(DM dm, PetscViewer viewer, DM sectiondm, PetscSF sf, Vec vec) 24038be3dfe1Sksagiyam { 24048be3dfe1Sksagiyam PetscBool ishdf5; 24058be3dfe1Sksagiyam 24068be3dfe1Sksagiyam PetscFunctionBegin; 24078be3dfe1Sksagiyam PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24088be3dfe1Sksagiyam PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 24098be3dfe1Sksagiyam PetscValidHeaderSpecific(sectiondm, DM_CLASSID, 3); 24108be3dfe1Sksagiyam PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 4); 24118be3dfe1Sksagiyam PetscValidHeaderSpecific(vec, VEC_CLASSID, 5); 24128be3dfe1Sksagiyam /* Check consistency */ 24138be3dfe1Sksagiyam { 24148be3dfe1Sksagiyam PetscSection section; 24158be3dfe1Sksagiyam PetscBool includesConstraints; 24168be3dfe1Sksagiyam PetscInt m, m1; 24178be3dfe1Sksagiyam 24189566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(vec, &m1)); 24199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(sectiondm, §ion)); 24209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetIncludesConstraints(section, &includesConstraints)); 24219566063dSJacob Faibussowitsch if (includesConstraints) PetscCall(PetscSectionGetStorageSize(section, &m)); 24229566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetConstrainedStorageSize(section, &m)); 242363a3b9bcSJacob Faibussowitsch PetscCheck(m1 == m,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Local vector size (%" PetscInt_FMT ") != local section storage size (%" PetscInt_FMT ")", m1, m); 24248be3dfe1Sksagiyam } 24259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5)); 24269566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_LocalVectorLoad,viewer,0,0,0)); 24278be3dfe1Sksagiyam if (ishdf5) { 24288be3dfe1Sksagiyam #if defined(PETSC_HAVE_HDF5) 24299566063dSJacob Faibussowitsch PetscCall(DMPlexVecLoad_HDF5_Internal(dm, viewer, sectiondm, sf, vec)); 24308be3dfe1Sksagiyam #else 24318be3dfe1Sksagiyam SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 24328be3dfe1Sksagiyam #endif 24338be3dfe1Sksagiyam } 24349566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_LocalVectorLoad,viewer,0,0,0)); 24358be3dfe1Sksagiyam PetscFunctionReturn(0); 24368be3dfe1Sksagiyam } 24378be3dfe1Sksagiyam 2438552f7358SJed Brown PetscErrorCode DMDestroy_Plex(DM dm) 2439552f7358SJed Brown { 2440552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2441552f7358SJed Brown 2442552f7358SJed Brown PetscFunctionBegin; 24439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMSetUpGLVisViewer_C",NULL)); 24449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMPlexInsertBoundaryValues_C", NULL)); 24459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMCreateNeumannOverlap_C", NULL)); 24469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)dm,"DMInterpolateSolution_C", NULL)); 24470d644c17SKarl Rupp if (--mesh->refct > 0) PetscFunctionReturn(0); 24489566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->coneSection)); 24499566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->cones)); 24509566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->coneOrientations)); 24519566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->supportSection)); 24529566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->subdomainSection)); 24539566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->supports)); 24549566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->facesTmp)); 24559566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->tetgenOpts)); 24569566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->triangleOpts)); 24579566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->transformType)); 24589566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&mesh->partitioner)); 24599566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&mesh->subpointMap)); 24609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&mesh->subpointIS)); 24619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&mesh->globalVertexNumbers)); 24629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&mesh->globalCellNumbers)); 24639566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->anchorSection)); 24649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&mesh->anchorIS)); 24659566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->parentSection)); 24669566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->parents)); 24679566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->childIDs)); 24689566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&mesh->childSection)); 24699566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->children)); 24709566063dSJacob Faibussowitsch PetscCall(DMDestroy(&mesh->referenceTree)); 24719566063dSJacob Faibussowitsch PetscCall(PetscGridHashDestroy(&mesh->lbox)); 24729566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh->neighbors)); 24739566063dSJacob Faibussowitsch if (mesh->metricCtx) PetscCall(PetscFree(mesh->metricCtx)); 2474552f7358SJed Brown /* This was originally freed in DMDestroy(), but that prevents reference counting of backend objects */ 24759566063dSJacob Faibussowitsch PetscCall(PetscFree(mesh)); 2476552f7358SJed Brown PetscFunctionReturn(0); 2477552f7358SJed Brown } 2478552f7358SJed Brown 2479b412c318SBarry Smith PetscErrorCode DMCreateMatrix_Plex(DM dm, Mat *J) 2480552f7358SJed Brown { 24818d1174e4SMatthew G. Knepley PetscSection sectionGlobal; 2482acd755d7SMatthew G. Knepley PetscInt bs = -1, mbs; 2483*9fca9976SJed Brown PetscInt localSize, localStart = 0; 2484837628f4SStefano Zampini PetscBool isShell, isBlock, isSeqBlock, isMPIBlock, isSymBlock, isSymSeqBlock, isSymMPIBlock, isMatIS; 2485b412c318SBarry Smith MatType mtype; 24861428887cSShri Abhyankar ISLocalToGlobalMapping ltog; 2487552f7358SJed Brown 2488552f7358SJed Brown PetscFunctionBegin; 24899566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 2490b412c318SBarry Smith mtype = dm->mattype; 24919566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 24929566063dSJacob Faibussowitsch /* PetscCall(PetscSectionGetStorageSize(sectionGlobal, &localSize)); */ 24939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(sectionGlobal, &localSize)); 2494*9fca9976SJed Brown PetscCallMPI(MPI_Exscan(&localSize, &localStart, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject) dm))); 24959566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)dm), J)); 24969566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*J, localSize, localSize, PETSC_DETERMINE, PETSC_DETERMINE)); 24979566063dSJacob Faibussowitsch PetscCall(MatSetType(*J, mtype)); 24989566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(*J)); 24999566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(*J, &mbs)); 2500acd755d7SMatthew G. Knepley if (mbs > 1) bs = mbs; 25019566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATSHELL, &isShell)); 25029566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATBAIJ, &isBlock)); 25039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATSEQBAIJ, &isSeqBlock)); 25049566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATMPIBAIJ, &isMPIBlock)); 25059566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATSBAIJ, &isSymBlock)); 25069566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATSEQSBAIJ, &isSymSeqBlock)); 25079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATMPISBAIJ, &isSymMPIBlock)); 25089566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(mtype, MATIS, &isMatIS)); 2509552f7358SJed Brown if (!isShell) { 2510837628f4SStefano Zampini PetscBool fillMatrix = (PetscBool)(!dm->prealloc_only && !isMatIS); 2511*9fca9976SJed Brown PetscInt *dnz, *onz, *dnzu, *onzu, bsLocal[2], bsMinMax[2], *pblocks; 2512fad22124SMatthew G Knepley PetscInt pStart, pEnd, p, dof, cdof; 2513552f7358SJed Brown 25149566063dSJacob Faibussowitsch PetscCall(DMGetLocalToGlobalMapping(dm,<og)); 2515*9fca9976SJed Brown 2516*9fca9976SJed Brown PetscCall(PetscCalloc1(localSize, &pblocks)); 25179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 2518e432b41dSStefano Zampini for (p = pStart; p < pEnd; ++p) { 2519*9fca9976SJed Brown PetscInt bdof, offset; 2520a9d99c84SMatthew G. Knepley 25219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &dof)); 2522*9fca9976SJed Brown PetscCall(PetscSectionGetOffset(sectionGlobal, p, &offset)); 25239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(sectionGlobal, p, &cdof)); 2524*9fca9976SJed Brown for (PetscInt i=0; i < dof - cdof; i++) 2525*9fca9976SJed Brown pblocks[offset - localStart + i] = dof - cdof; 25261d17a0a3SMatthew G. Knepley dof = dof < 0 ? -(dof+1) : dof; 25271d17a0a3SMatthew G. Knepley bdof = cdof && (dof-cdof) ? 1 : dof; 25281d17a0a3SMatthew G. Knepley if (dof) { 25291d17a0a3SMatthew G. Knepley if (bs < 0) {bs = bdof;} 2530*9fca9976SJed Brown else if (bs != bdof) {bs = 1;} 2531552f7358SJed Brown } 25322a28c762SMatthew G Knepley } 25332a28c762SMatthew G Knepley /* Must have same blocksize on all procs (some might have no points) */ 2534e432b41dSStefano Zampini bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 2535e432b41dSStefano Zampini bsLocal[1] = bs; 25369566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject) dm), bsLocal, bsMinMax)); 2537e432b41dSStefano Zampini if (bsMinMax[0] != bsMinMax[1]) bs = 1; 2538e432b41dSStefano Zampini else bs = bsMinMax[0]; 25396fd5c86aSStefano Zampini bs = PetscMax(1,bs); 25409566063dSJacob Faibussowitsch PetscCall(MatSetLocalToGlobalMapping(*J,ltog,ltog)); 25410682b8bbSJed Brown if (dm->prealloc_skip) { // User will likely use MatSetPreallocationCOO(), but still set structural parameters 25429566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*J, bs)); 25439566063dSJacob Faibussowitsch PetscCall(MatSetUp(*J)); 25440682b8bbSJed Brown } else { 25459566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(localSize/bs, &dnz, localSize/bs, &onz, localSize/bs, &dnzu, localSize/bs, &onzu)); 25469566063dSJacob Faibussowitsch PetscCall(DMPlexPreallocateOperator(dm, bs, dnz, onz, dnzu, onzu, *J, fillMatrix)); 25479566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnz, onz, dnzu, onzu)); 2548552f7358SJed Brown } 2549*9fca9976SJed Brown { // Consolidate blocks 2550*9fca9976SJed Brown PetscInt nblocks = 0; 2551*9fca9976SJed Brown for (PetscInt i=0; i<localSize; i += PetscMax(1, pblocks[i])) { 2552*9fca9976SJed Brown if (pblocks[i] == 0) continue; 2553*9fca9976SJed Brown pblocks[nblocks++] = pblocks[i]; // nblocks always <= i 2554*9fca9976SJed Brown for (PetscInt j=1; j<pblocks[i]; j++) { 2555*9fca9976SJed Brown PetscCheck(pblocks[i+j] == pblocks[i], PETSC_COMM_SELF, PETSC_ERR_PLIB, "Block of size %" PetscInt_FMT " mismatches entry %" PetscInt_FMT, pblocks[i], pblocks[i+j]); 2556*9fca9976SJed Brown } 2557*9fca9976SJed Brown } 2558*9fca9976SJed Brown PetscCall(MatSetVariableBlockSizes(*J, nblocks, pblocks)); 2559*9fca9976SJed Brown } 2560*9fca9976SJed Brown PetscCall(PetscFree(pblocks)); 2561aa0f6e3cSJed Brown } 25629566063dSJacob Faibussowitsch PetscCall(MatSetDM(*J, dm)); 2563552f7358SJed Brown PetscFunctionReturn(0); 2564552f7358SJed Brown } 2565552f7358SJed Brown 25667cd05799SMatthew G. Knepley /*@ 2567a8f00d21SMatthew G. Knepley DMPlexGetSubdomainSection - Returns the section associated with the subdomain 2568be36d101SStefano Zampini 2569be36d101SStefano Zampini Not collective 2570be36d101SStefano Zampini 2571be36d101SStefano Zampini Input Parameter: 2572be36d101SStefano Zampini . mesh - The DMPlex 2573be36d101SStefano Zampini 2574be36d101SStefano Zampini Output Parameters: 2575be36d101SStefano Zampini . subsection - The subdomain section 2576be36d101SStefano Zampini 2577be36d101SStefano Zampini Level: developer 2578be36d101SStefano Zampini 2579be36d101SStefano Zampini .seealso: 25807cd05799SMatthew G. Knepley @*/ 2581be36d101SStefano Zampini PetscErrorCode DMPlexGetSubdomainSection(DM dm, PetscSection *subsection) 2582be36d101SStefano Zampini { 2583be36d101SStefano Zampini DM_Plex *mesh = (DM_Plex*) dm->data; 2584be36d101SStefano Zampini 2585be36d101SStefano Zampini PetscFunctionBegin; 2586be36d101SStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2587be36d101SStefano Zampini if (!mesh->subdomainSection) { 2588be36d101SStefano Zampini PetscSection section; 2589be36d101SStefano Zampini PetscSF sf; 2590be36d101SStefano Zampini 25919566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF,&sf)); 25929566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm,§ion)); 25939566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(section,sf,PETSC_FALSE,PETSC_TRUE,&mesh->subdomainSection)); 25949566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 2595be36d101SStefano Zampini } 2596be36d101SStefano Zampini *subsection = mesh->subdomainSection; 2597be36d101SStefano Zampini PetscFunctionReturn(0); 2598be36d101SStefano Zampini } 2599be36d101SStefano Zampini 2600552f7358SJed Brown /*@ 2601552f7358SJed Brown DMPlexGetChart - Return the interval for all mesh points [pStart, pEnd) 2602552f7358SJed Brown 2603552f7358SJed Brown Not collective 2604552f7358SJed Brown 2605552f7358SJed Brown Input Parameter: 2606552f7358SJed Brown . mesh - The DMPlex 2607552f7358SJed Brown 2608552f7358SJed Brown Output Parameters: 2609552f7358SJed Brown + pStart - The first mesh point 2610552f7358SJed Brown - pEnd - The upper bound for mesh points 2611552f7358SJed Brown 2612552f7358SJed Brown Level: beginner 2613552f7358SJed Brown 2614db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetChart()` 2615552f7358SJed Brown @*/ 2616552f7358SJed Brown PetscErrorCode DMPlexGetChart(DM dm, PetscInt *pStart, PetscInt *pEnd) 2617552f7358SJed Brown { 2618552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2619552f7358SJed Brown 2620552f7358SJed Brown PetscFunctionBegin; 2621552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, pStart, pEnd)); 2623552f7358SJed Brown PetscFunctionReturn(0); 2624552f7358SJed Brown } 2625552f7358SJed Brown 2626552f7358SJed Brown /*@ 2627552f7358SJed Brown DMPlexSetChart - Set the interval for all mesh points [pStart, pEnd) 2628552f7358SJed Brown 2629552f7358SJed Brown Not collective 2630552f7358SJed Brown 2631552f7358SJed Brown Input Parameters: 2632552f7358SJed Brown + mesh - The DMPlex 2633552f7358SJed Brown . pStart - The first mesh point 2634552f7358SJed Brown - pEnd - The upper bound for mesh points 2635552f7358SJed Brown 2636552f7358SJed Brown Output Parameters: 2637552f7358SJed Brown 2638552f7358SJed Brown Level: beginner 2639552f7358SJed Brown 2640db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetChart()` 2641552f7358SJed Brown @*/ 2642552f7358SJed Brown PetscErrorCode DMPlexSetChart(DM dm, PetscInt pStart, PetscInt pEnd) 2643552f7358SJed Brown { 2644552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2645552f7358SJed Brown 2646552f7358SJed Brown PetscFunctionBegin; 2647552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(mesh->coneSection, pStart, pEnd)); 26499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(mesh->supportSection, pStart, pEnd)); 2650552f7358SJed Brown PetscFunctionReturn(0); 2651552f7358SJed Brown } 2652552f7358SJed Brown 2653552f7358SJed Brown /*@ 2654eaf898f9SPatrick Sanan DMPlexGetConeSize - Return the number of in-edges for this point in the DAG 2655552f7358SJed Brown 2656552f7358SJed Brown Not collective 2657552f7358SJed Brown 2658552f7358SJed Brown Input Parameters: 2659552f7358SJed Brown + mesh - The DMPlex 2660eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 2661552f7358SJed Brown 2662552f7358SJed Brown Output Parameter: 2663552f7358SJed Brown . size - The cone size for point p 2664552f7358SJed Brown 2665552f7358SJed Brown Level: beginner 2666552f7358SJed Brown 2667db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetConeSize()`, `DMPlexSetChart()` 2668552f7358SJed Brown @*/ 2669552f7358SJed Brown PetscErrorCode DMPlexGetConeSize(DM dm, PetscInt p, PetscInt *size) 2670552f7358SJed Brown { 2671552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2672552f7358SJed Brown 2673552f7358SJed Brown PetscFunctionBegin; 2674552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2675dadcf809SJacob Faibussowitsch PetscValidIntPointer(size, 3); 26769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, size)); 2677552f7358SJed Brown PetscFunctionReturn(0); 2678552f7358SJed Brown } 2679552f7358SJed Brown 2680552f7358SJed Brown /*@ 2681eaf898f9SPatrick Sanan DMPlexSetConeSize - Set the number of in-edges for this point in the DAG 2682552f7358SJed Brown 2683552f7358SJed Brown Not collective 2684552f7358SJed Brown 2685552f7358SJed Brown Input Parameters: 2686552f7358SJed Brown + mesh - The DMPlex 2687eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 2688552f7358SJed Brown - size - The cone size for point p 2689552f7358SJed Brown 2690552f7358SJed Brown Output Parameter: 2691552f7358SJed Brown 2692552f7358SJed Brown Note: 2693552f7358SJed Brown This should be called after DMPlexSetChart(). 2694552f7358SJed Brown 2695552f7358SJed Brown Level: beginner 2696552f7358SJed Brown 2697db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetConeSize()`, `DMPlexSetChart()` 2698552f7358SJed Brown @*/ 2699552f7358SJed Brown PetscErrorCode DMPlexSetConeSize(DM dm, PetscInt p, PetscInt size) 2700552f7358SJed Brown { 2701552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2702552f7358SJed Brown 2703552f7358SJed Brown PetscFunctionBegin; 2704552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27059566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(mesh->coneSection, p, size)); 2706552f7358SJed Brown PetscFunctionReturn(0); 2707552f7358SJed Brown } 2708552f7358SJed Brown 2709f5a469b9SMatthew G. Knepley /*@ 2710eaf898f9SPatrick Sanan DMPlexAddConeSize - Add the given number of in-edges to this point in the DAG 2711f5a469b9SMatthew G. Knepley 2712f5a469b9SMatthew G. Knepley Not collective 2713f5a469b9SMatthew G. Knepley 2714f5a469b9SMatthew G. Knepley Input Parameters: 2715f5a469b9SMatthew G. Knepley + mesh - The DMPlex 2716eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 2717f5a469b9SMatthew G. Knepley - size - The additional cone size for point p 2718f5a469b9SMatthew G. Knepley 2719f5a469b9SMatthew G. Knepley Output Parameter: 2720f5a469b9SMatthew G. Knepley 2721f5a469b9SMatthew G. Knepley Note: 2722f5a469b9SMatthew G. Knepley This should be called after DMPlexSetChart(). 2723f5a469b9SMatthew G. Knepley 2724f5a469b9SMatthew G. Knepley Level: beginner 2725f5a469b9SMatthew G. Knepley 2726db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetConeSize()`, `DMPlexGetConeSize()`, `DMPlexSetChart()` 2727f5a469b9SMatthew G. Knepley @*/ 2728f5a469b9SMatthew G. Knepley PetscErrorCode DMPlexAddConeSize(DM dm, PetscInt p, PetscInt size) 2729f5a469b9SMatthew G. Knepley { 2730f5a469b9SMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 2731f5a469b9SMatthew G. Knepley PetscFunctionBegin; 2732f5a469b9SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27339566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(mesh->coneSection, p, size)); 2734f5a469b9SMatthew G. Knepley PetscFunctionReturn(0); 2735f5a469b9SMatthew G. Knepley } 2736f5a469b9SMatthew G. Knepley 2737552f7358SJed Brown /*@C 2738eaf898f9SPatrick Sanan DMPlexGetCone - Return the points on the in-edges for this point in the DAG 2739552f7358SJed Brown 2740552f7358SJed Brown Not collective 2741552f7358SJed Brown 2742552f7358SJed Brown Input Parameters: 2743833c876bSVaclav Hapla + dm - The DMPlex 2744eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 2745552f7358SJed Brown 2746552f7358SJed Brown Output Parameter: 2747552f7358SJed Brown . cone - An array of points which are on the in-edges for point p 2748552f7358SJed Brown 2749552f7358SJed Brown Level: beginner 2750552f7358SJed Brown 27513813dfbdSMatthew G Knepley Fortran Notes: 27523813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 27533813dfbdSMatthew G Knepley include petsc.h90 in your code. 2754922102d1SVaclav Hapla You must also call DMPlexRestoreCone() after you finish using the returned array. 2755922102d1SVaclav Hapla DMPlexRestoreCone() is not needed/available in C. 27563813dfbdSMatthew G Knepley 2757db781477SPatrick Sanan .seealso: `DMPlexGetConeSize()`, `DMPlexSetCone()`, `DMPlexGetConeTuple()`, `DMPlexSetChart()` 2758552f7358SJed Brown @*/ 2759552f7358SJed Brown PetscErrorCode DMPlexGetCone(DM dm, PetscInt p, const PetscInt *cone[]) 2760552f7358SJed Brown { 2761552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2762552f7358SJed Brown PetscInt off; 2763552f7358SJed Brown 2764552f7358SJed Brown PetscFunctionBegin; 2765552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2766552f7358SJed Brown PetscValidPointer(cone, 3); 27679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 2768552f7358SJed Brown *cone = &mesh->cones[off]; 2769552f7358SJed Brown PetscFunctionReturn(0); 2770552f7358SJed Brown } 2771552f7358SJed Brown 27720ce7577fSVaclav Hapla /*@C 27730ce7577fSVaclav Hapla DMPlexGetConeTuple - Return the points on the in-edges of several points in the DAG 27740ce7577fSVaclav Hapla 27750ce7577fSVaclav Hapla Not collective 27760ce7577fSVaclav Hapla 27770ce7577fSVaclav Hapla Input Parameters: 27780ce7577fSVaclav Hapla + dm - The DMPlex 27790ce7577fSVaclav Hapla - p - The IS of points, which must lie in the chart set with DMPlexSetChart() 27800ce7577fSVaclav Hapla 2781d8d19677SJose E. Roman Output Parameters: 27820ce7577fSVaclav Hapla + pConesSection - PetscSection describing the layout of pCones 27830ce7577fSVaclav Hapla - pCones - An array of points which are on the in-edges for the point set p 27840ce7577fSVaclav Hapla 27850ce7577fSVaclav Hapla Level: intermediate 27860ce7577fSVaclav Hapla 2787db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexGetConeRecursive()`, `DMPlexSetChart()` 27880ce7577fSVaclav Hapla @*/ 27890ce7577fSVaclav Hapla PetscErrorCode DMPlexGetConeTuple(DM dm, IS p, PetscSection *pConesSection, IS *pCones) 27900ce7577fSVaclav Hapla { 27910ce7577fSVaclav Hapla PetscSection cs, newcs; 27920ce7577fSVaclav Hapla PetscInt *cones; 27930ce7577fSVaclav Hapla PetscInt *newarr=NULL; 27940ce7577fSVaclav Hapla PetscInt n; 27950ce7577fSVaclav Hapla 27960ce7577fSVaclav Hapla PetscFunctionBegin; 27979566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dm, &cones)); 27989566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &cs)); 27999566063dSJacob Faibussowitsch PetscCall(PetscSectionExtractDofsFromArray(cs, MPIU_INT, cones, p, &newcs, pCones ? ((void**)&newarr) : NULL)); 28000ce7577fSVaclav Hapla if (pConesSection) *pConesSection = newcs; 28010ce7577fSVaclav Hapla if (pCones) { 28029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newcs, &n)); 28039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)p), n, newarr, PETSC_OWN_POINTER, pCones)); 28040ce7577fSVaclav Hapla } 28050ce7577fSVaclav Hapla PetscFunctionReturn(0); 28060ce7577fSVaclav Hapla } 28070ce7577fSVaclav Hapla 2808af9eab45SVaclav Hapla /*@ 2809af9eab45SVaclav Hapla DMPlexGetConeRecursiveVertices - Expand each given point into its cone points and do that recursively until we end up just with vertices. 2810d4636a37SVaclav Hapla 2811d4636a37SVaclav Hapla Not collective 2812d4636a37SVaclav Hapla 2813d4636a37SVaclav Hapla Input Parameters: 2814d4636a37SVaclav Hapla + dm - The DMPlex 2815af9eab45SVaclav Hapla - points - The IS of points, which must lie in the chart set with DMPlexSetChart() 2816d4636a37SVaclav Hapla 2817d4636a37SVaclav Hapla Output Parameter: 2818af9eab45SVaclav Hapla . expandedPoints - An array of vertices recursively expanded from input points 2819d4636a37SVaclav Hapla 2820d4636a37SVaclav Hapla Level: advanced 2821d4636a37SVaclav Hapla 2822af9eab45SVaclav Hapla Notes: 2823af9eab45SVaclav Hapla Like DMPlexGetConeRecursive but returns only the 0-depth IS (i.e. vertices only) and no sections. 2824af9eab45SVaclav Hapla There is no corresponding Restore function, just call ISDestroy() on the returned IS to deallocate. 2825af9eab45SVaclav Hapla 2826db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexGetConeTuple()`, `DMPlexGetConeRecursive()`, `DMPlexRestoreConeRecursive()`, `DMPlexGetDepth()` 2827d4636a37SVaclav Hapla @*/ 2828af9eab45SVaclav Hapla PetscErrorCode DMPlexGetConeRecursiveVertices(DM dm, IS points, IS *expandedPoints) 2829d4636a37SVaclav Hapla { 2830af9eab45SVaclav Hapla IS *expandedPointsAll; 2831af9eab45SVaclav Hapla PetscInt depth; 2832d4636a37SVaclav Hapla 2833d4636a37SVaclav Hapla PetscFunctionBegin; 2834af9eab45SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2835af9eab45SVaclav Hapla PetscValidHeaderSpecific(points, IS_CLASSID, 2); 2836af9eab45SVaclav Hapla PetscValidPointer(expandedPoints, 3); 28379566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeRecursive(dm, points, &depth, &expandedPointsAll, NULL)); 2838af9eab45SVaclav Hapla *expandedPoints = expandedPointsAll[0]; 28399566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)expandedPointsAll[0])); 28409566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreConeRecursive(dm, points, &depth, &expandedPointsAll, NULL)); 2841af9eab45SVaclav Hapla PetscFunctionReturn(0); 2842af9eab45SVaclav Hapla } 2843af9eab45SVaclav Hapla 2844af9eab45SVaclav Hapla /*@ 2845af9eab45SVaclav Hapla DMPlexGetConeRecursive - Expand each given point into its cone points and do that recursively until we end up just with vertices (DAG points of depth 0, i.e. without cones). 2846af9eab45SVaclav Hapla 2847af9eab45SVaclav Hapla Not collective 2848af9eab45SVaclav Hapla 2849af9eab45SVaclav Hapla Input Parameters: 2850af9eab45SVaclav Hapla + dm - The DMPlex 2851af9eab45SVaclav Hapla - points - The IS of points, which must lie in the chart set with DMPlexSetChart() 2852af9eab45SVaclav Hapla 2853d8d19677SJose E. Roman Output Parameters: 2854af9eab45SVaclav Hapla + depth - (optional) Size of the output arrays, equal to DMPlex depth, returned by DMPlexGetDepth() 2855af9eab45SVaclav Hapla . expandedPoints - (optional) An array of index sets with recursively expanded cones 2856af9eab45SVaclav Hapla - sections - (optional) An array of sections which describe mappings from points to their cone points 2857af9eab45SVaclav Hapla 2858af9eab45SVaclav Hapla Level: advanced 2859af9eab45SVaclav Hapla 2860af9eab45SVaclav Hapla Notes: 2861af9eab45SVaclav Hapla Like DMPlexGetConeTuple() but recursive. 2862af9eab45SVaclav Hapla 2863af9eab45SVaclav Hapla Array expandedPoints has size equal to depth. Each expandedPoints[d] contains DAG points with maximum depth d, recursively cone-wise expanded from the input points. 2864af9eab45SVaclav Hapla For example, for d=0 it contains only vertices, for d=1 it can contain vertices and edges, etc. 2865af9eab45SVaclav Hapla 2866af9eab45SVaclav Hapla Array section has size equal to depth. Each PetscSection sections[d] realizes mapping from expandedPoints[d+1] (section points) to expandedPoints[d] (section dofs) as follows: 2867af9eab45SVaclav Hapla (1) DAG points in expandedPoints[d+1] with depth d+1 to their cone points in expandedPoints[d]; 2868af9eab45SVaclav Hapla (2) DAG points in expandedPoints[d+1] with depth in [0,d] to the same points in expandedPoints[d]. 2869af9eab45SVaclav Hapla 2870db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexGetConeTuple()`, `DMPlexRestoreConeRecursive()`, `DMPlexGetConeRecursiveVertices()`, `DMPlexGetDepth()` 2871af9eab45SVaclav Hapla @*/ 2872af9eab45SVaclav Hapla PetscErrorCode DMPlexGetConeRecursive(DM dm, IS points, PetscInt *depth, IS *expandedPoints[], PetscSection *sections[]) 2873af9eab45SVaclav Hapla { 2874af9eab45SVaclav Hapla const PetscInt *arr0=NULL, *cone=NULL; 2875af9eab45SVaclav Hapla PetscInt *arr=NULL, *newarr=NULL; 2876af9eab45SVaclav Hapla PetscInt d, depth_, i, n, newn, cn, co, start, end; 2877af9eab45SVaclav Hapla IS *expandedPoints_; 2878af9eab45SVaclav Hapla PetscSection *sections_; 2879af9eab45SVaclav Hapla 2880af9eab45SVaclav Hapla PetscFunctionBegin; 2881af9eab45SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2882af9eab45SVaclav Hapla PetscValidHeaderSpecific(points, IS_CLASSID, 2); 2883af9eab45SVaclav Hapla if (depth) PetscValidIntPointer(depth, 3); 2884af9eab45SVaclav Hapla if (expandedPoints) PetscValidPointer(expandedPoints, 4); 2885af9eab45SVaclav Hapla if (sections) PetscValidPointer(sections, 5); 28869566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(points, &n)); 28879566063dSJacob Faibussowitsch PetscCall(ISGetIndices(points, &arr0)); 28889566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth_)); 28899566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(depth_, &expandedPoints_)); 28909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(depth_, §ions_)); 2891af9eab45SVaclav Hapla arr = (PetscInt*) arr0; /* this is ok because first generation of arr is not modified */ 2892af9eab45SVaclav Hapla for (d=depth_-1; d>=0; d--) { 28939566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, §ions_[d])); 28949566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(sections_[d], 0, n)); 2895af9eab45SVaclav Hapla for (i=0; i<n; i++) { 28969566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d+1, &start, &end)); 2897af9eab45SVaclav Hapla if (arr[i] >= start && arr[i] < end) { 28989566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, arr[i], &cn)); 28999566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(sections_[d], i, cn)); 2900af9eab45SVaclav Hapla } else { 29019566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(sections_[d], i, 1)); 2902af9eab45SVaclav Hapla } 2903af9eab45SVaclav Hapla } 29049566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(sections_[d])); 29059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(sections_[d], &newn)); 29069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newn, &newarr)); 2907af9eab45SVaclav Hapla for (i=0; i<n; i++) { 29089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sections_[d], i, &cn)); 29099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sections_[d], i, &co)); 2910af9eab45SVaclav Hapla if (cn > 1) { 29119566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, arr[i], &cone)); 29129566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(&newarr[co], cone, cn*sizeof(PetscInt))); 2913af9eab45SVaclav Hapla } else { 2914af9eab45SVaclav Hapla newarr[co] = arr[i]; 2915af9eab45SVaclav Hapla } 2916af9eab45SVaclav Hapla } 29179566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, newn, newarr, PETSC_OWN_POINTER, &expandedPoints_[d])); 2918af9eab45SVaclav Hapla arr = newarr; 2919af9eab45SVaclav Hapla n = newn; 2920af9eab45SVaclav Hapla } 29219566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(points, &arr0)); 2922af9eab45SVaclav Hapla *depth = depth_; 2923af9eab45SVaclav Hapla if (expandedPoints) *expandedPoints = expandedPoints_; 2924af9eab45SVaclav Hapla else { 29259566063dSJacob Faibussowitsch for (d=0; d<depth_; d++) PetscCall(ISDestroy(&expandedPoints_[d])); 29269566063dSJacob Faibussowitsch PetscCall(PetscFree(expandedPoints_)); 2927af9eab45SVaclav Hapla } 2928af9eab45SVaclav Hapla if (sections) *sections = sections_; 2929af9eab45SVaclav Hapla else { 29309566063dSJacob Faibussowitsch for (d=0; d<depth_; d++) PetscCall(PetscSectionDestroy(§ions_[d])); 29319566063dSJacob Faibussowitsch PetscCall(PetscFree(sections_)); 2932af9eab45SVaclav Hapla } 2933af9eab45SVaclav Hapla PetscFunctionReturn(0); 2934af9eab45SVaclav Hapla } 2935af9eab45SVaclav Hapla 2936af9eab45SVaclav Hapla /*@ 2937af9eab45SVaclav Hapla DMPlexRestoreConeRecursive - Deallocates arrays created by DMPlexGetConeRecursive 2938af9eab45SVaclav Hapla 2939af9eab45SVaclav Hapla Not collective 2940af9eab45SVaclav Hapla 2941af9eab45SVaclav Hapla Input Parameters: 2942af9eab45SVaclav Hapla + dm - The DMPlex 2943af9eab45SVaclav Hapla - points - The IS of points, which must lie in the chart set with DMPlexSetChart() 2944af9eab45SVaclav Hapla 2945d8d19677SJose E. Roman Output Parameters: 2946af9eab45SVaclav Hapla + depth - (optional) Size of the output arrays, equal to DMPlex depth, returned by DMPlexGetDepth() 2947af9eab45SVaclav Hapla . expandedPoints - (optional) An array of recursively expanded cones 2948af9eab45SVaclav Hapla - sections - (optional) An array of sections which describe mappings from points to their cone points 2949af9eab45SVaclav Hapla 2950af9eab45SVaclav Hapla Level: advanced 2951af9eab45SVaclav Hapla 2952af9eab45SVaclav Hapla Notes: 2953af9eab45SVaclav Hapla See DMPlexGetConeRecursive() for details. 2954af9eab45SVaclav Hapla 2955db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexGetConeTuple()`, `DMPlexGetConeRecursive()`, `DMPlexGetConeRecursiveVertices()`, `DMPlexGetDepth()` 2956af9eab45SVaclav Hapla @*/ 2957af9eab45SVaclav Hapla PetscErrorCode DMPlexRestoreConeRecursive(DM dm, IS points, PetscInt *depth, IS *expandedPoints[], PetscSection *sections[]) 2958af9eab45SVaclav Hapla { 2959af9eab45SVaclav Hapla PetscInt d, depth_; 2960af9eab45SVaclav Hapla 2961af9eab45SVaclav Hapla PetscFunctionBegin; 29629566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth_)); 29631dca8a05SBarry Smith PetscCheck(!depth || *depth == depth_,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "depth changed since last call to DMPlexGetConeRecursive"); 2964af9eab45SVaclav Hapla if (depth) *depth = 0; 2965af9eab45SVaclav Hapla if (expandedPoints) { 29669566063dSJacob Faibussowitsch for (d=0; d<depth_; d++) PetscCall(ISDestroy(&((*expandedPoints)[d]))); 29679566063dSJacob Faibussowitsch PetscCall(PetscFree(*expandedPoints)); 2968af9eab45SVaclav Hapla } 2969af9eab45SVaclav Hapla if (sections) { 29709566063dSJacob Faibussowitsch for (d=0; d<depth_; d++) PetscCall(PetscSectionDestroy(&((*sections)[d]))); 29719566063dSJacob Faibussowitsch PetscCall(PetscFree(*sections)); 2972af9eab45SVaclav Hapla } 2973d4636a37SVaclav Hapla PetscFunctionReturn(0); 2974d4636a37SVaclav Hapla } 2975d4636a37SVaclav Hapla 2976552f7358SJed Brown /*@ 297792371b87SBarry Smith DMPlexSetCone - Set the points on the in-edges for this point in the DAG; that is these are the points that cover the specific point 2978552f7358SJed Brown 2979552f7358SJed Brown Not collective 2980552f7358SJed Brown 2981552f7358SJed Brown Input Parameters: 2982552f7358SJed Brown + mesh - The DMPlex 2983eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 2984552f7358SJed Brown - cone - An array of points which are on the in-edges for point p 2985552f7358SJed Brown 2986552f7358SJed Brown Output Parameter: 2987552f7358SJed Brown 2988552f7358SJed Brown Note: 2989552f7358SJed Brown This should be called after all calls to DMPlexSetConeSize() and DMSetUp(). 2990552f7358SJed Brown 2991552f7358SJed Brown Level: beginner 2992552f7358SJed Brown 2993db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()`, `DMPlexSetSupport()`, `DMPlexSetSupportSize()` 2994552f7358SJed Brown @*/ 2995552f7358SJed Brown PetscErrorCode DMPlexSetCone(DM dm, PetscInt p, const PetscInt cone[]) 2996552f7358SJed Brown { 2997552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 2998552f7358SJed Brown PetscInt pStart, pEnd; 2999552f7358SJed Brown PetscInt dof, off, c; 3000552f7358SJed Brown 3001552f7358SJed Brown PetscFunctionBegin; 3002552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 30039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, &pStart, &pEnd)); 30049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 3005dadcf809SJacob Faibussowitsch if (dof) PetscValidIntPointer(cone, 3); 30069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 300763a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 3008552f7358SJed Brown for (c = 0; c < dof; ++c) { 300963a3b9bcSJacob Faibussowitsch PetscCheck(!(cone[c] < pStart) && !(cone[c] >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", cone[c], pStart, pEnd); 3010552f7358SJed Brown mesh->cones[off+c] = cone[c]; 3011552f7358SJed Brown } 3012552f7358SJed Brown PetscFunctionReturn(0); 3013552f7358SJed Brown } 3014552f7358SJed Brown 3015552f7358SJed Brown /*@C 3016eaf898f9SPatrick Sanan DMPlexGetConeOrientation - Return the orientations on the in-edges for this point in the DAG 3017552f7358SJed Brown 3018552f7358SJed Brown Not collective 3019552f7358SJed Brown 3020552f7358SJed Brown Input Parameters: 3021552f7358SJed Brown + mesh - The DMPlex 3022eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 3023552f7358SJed Brown 3024552f7358SJed Brown Output Parameter: 3025552f7358SJed Brown . coneOrientation - An array of orientations which are on the in-edges for point p. An orientation is an 3026b5a892a1SMatthew G. Knepley integer giving the prescription for cone traversal. 3027552f7358SJed Brown 3028552f7358SJed Brown Level: beginner 3029552f7358SJed Brown 3030b5a892a1SMatthew G. Knepley Notes: 3031b5a892a1SMatthew G. Knepley The number indexes the symmetry transformations for the cell type (see manual). Orientation 0 is always 3032b5a892a1SMatthew G. Knepley the identity transformation. Negative orientation indicates reflection so that -(o+1) is the reflection 3033b5a892a1SMatthew G. Knepley of o, however it is not necessarily the inverse. To get the inverse, use DMPolytopeTypeComposeOrientationInv() 3034b5a892a1SMatthew G. Knepley with the identity. 3035b5a892a1SMatthew G. Knepley 30363813dfbdSMatthew G Knepley Fortran Notes: 30373813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 30383813dfbdSMatthew G Knepley include petsc.h90 in your code. 30393b12b3d8SVaclav Hapla You must also call DMPlexRestoreConeOrientation() after you finish using the returned array. 3040922102d1SVaclav Hapla DMPlexRestoreConeOrientation() is not needed/available in C. 30413813dfbdSMatthew G Knepley 3042db781477SPatrick Sanan .seealso: `DMPolytopeTypeComposeOrientation()`, `DMPolytopeTypeComposeOrientationInv()`, `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetCone()`, `DMPlexSetChart()` 3043552f7358SJed Brown @*/ 3044552f7358SJed Brown PetscErrorCode DMPlexGetConeOrientation(DM dm, PetscInt p, const PetscInt *coneOrientation[]) 3045552f7358SJed Brown { 3046552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3047552f7358SJed Brown PetscInt off; 3048552f7358SJed Brown 3049552f7358SJed Brown PetscFunctionBegin; 3050552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 305176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 3052552f7358SJed Brown PetscInt dof; 30539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 3054552f7358SJed Brown if (dof) PetscValidPointer(coneOrientation, 3); 3055552f7358SJed Brown } 30569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 30570d644c17SKarl Rupp 3058552f7358SJed Brown *coneOrientation = &mesh->coneOrientations[off]; 3059552f7358SJed Brown PetscFunctionReturn(0); 3060552f7358SJed Brown } 3061552f7358SJed Brown 3062552f7358SJed Brown /*@ 3063eaf898f9SPatrick Sanan DMPlexSetConeOrientation - Set the orientations on the in-edges for this point in the DAG 3064552f7358SJed Brown 3065552f7358SJed Brown Not collective 3066552f7358SJed Brown 3067552f7358SJed Brown Input Parameters: 3068552f7358SJed Brown + mesh - The DMPlex 3069eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 3070b5a892a1SMatthew G. Knepley - coneOrientation - An array of orientations 3071552f7358SJed Brown Output Parameter: 3072552f7358SJed Brown 3073b5a892a1SMatthew G. Knepley Notes: 3074552f7358SJed Brown This should be called after all calls to DMPlexSetConeSize() and DMSetUp(). 3075552f7358SJed Brown 3076b5a892a1SMatthew G. Knepley The meaning of coneOrientation is detailed in DMPlexGetConeOrientation(). 3077b5a892a1SMatthew G. Knepley 3078552f7358SJed Brown Level: beginner 3079552f7358SJed Brown 3080db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetConeOrientation()`, `DMPlexSetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()` 3081552f7358SJed Brown @*/ 3082552f7358SJed Brown PetscErrorCode DMPlexSetConeOrientation(DM dm, PetscInt p, const PetscInt coneOrientation[]) 3083552f7358SJed Brown { 3084552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3085552f7358SJed Brown PetscInt pStart, pEnd; 3086552f7358SJed Brown PetscInt dof, off, c; 3087552f7358SJed Brown 3088552f7358SJed Brown PetscFunctionBegin; 3089552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 30909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, &pStart, &pEnd)); 30919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 3092dadcf809SJacob Faibussowitsch if (dof) PetscValidIntPointer(coneOrientation, 3); 30939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 309463a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 3095552f7358SJed Brown for (c = 0; c < dof; ++c) { 3096552f7358SJed Brown PetscInt cdof, o = coneOrientation[c]; 3097552f7358SJed Brown 30989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, mesh->cones[off+c], &cdof)); 30991dca8a05SBarry Smith PetscCheck(!o || (o >= -(cdof+1) && o < cdof),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone orientation %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ". %" PetscInt_FMT ")", o, -(cdof+1), cdof); 3100552f7358SJed Brown mesh->coneOrientations[off+c] = o; 3101552f7358SJed Brown } 3102552f7358SJed Brown PetscFunctionReturn(0); 3103552f7358SJed Brown } 3104552f7358SJed Brown 31057cd05799SMatthew G. Knepley /*@ 3106eaf898f9SPatrick Sanan DMPlexInsertCone - Insert a point into the in-edges for the point p in the DAG 31077cd05799SMatthew G. Knepley 31087cd05799SMatthew G. Knepley Not collective 31097cd05799SMatthew G. Knepley 31107cd05799SMatthew G. Knepley Input Parameters: 31117cd05799SMatthew G. Knepley + mesh - The DMPlex 3112eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 31137cd05799SMatthew G. Knepley . conePos - The local index in the cone where the point should be put 31147cd05799SMatthew G. Knepley - conePoint - The mesh point to insert 31157cd05799SMatthew G. Knepley 31167cd05799SMatthew G. Knepley Level: beginner 31177cd05799SMatthew G. Knepley 3118db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()` 31197cd05799SMatthew G. Knepley @*/ 3120552f7358SJed Brown PetscErrorCode DMPlexInsertCone(DM dm, PetscInt p, PetscInt conePos, PetscInt conePoint) 3121552f7358SJed Brown { 3122552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3123552f7358SJed Brown PetscInt pStart, pEnd; 3124552f7358SJed Brown PetscInt dof, off; 3125552f7358SJed Brown 3126552f7358SJed Brown PetscFunctionBegin; 3127552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, &pStart, &pEnd)); 312963a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 313063a3b9bcSJacob Faibussowitsch PetscCheck(!(conePoint < pStart) && !(conePoint >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", conePoint, pStart, pEnd); 31319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 31329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 313363a3b9bcSJacob Faibussowitsch PetscCheck(!(conePos < 0) && !(conePos >= dof),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone position %" PetscInt_FMT " of point %" PetscInt_FMT " is not in the valid range [0, %" PetscInt_FMT ")", conePos, p, dof); 3134552f7358SJed Brown mesh->cones[off+conePos] = conePoint; 3135552f7358SJed Brown PetscFunctionReturn(0); 3136552f7358SJed Brown } 3137552f7358SJed Brown 31387cd05799SMatthew G. Knepley /*@ 3139eaf898f9SPatrick Sanan DMPlexInsertConeOrientation - Insert a point orientation for the in-edge for the point p in the DAG 31407cd05799SMatthew G. Knepley 31417cd05799SMatthew G. Knepley Not collective 31427cd05799SMatthew G. Knepley 31437cd05799SMatthew G. Knepley Input Parameters: 31447cd05799SMatthew G. Knepley + mesh - The DMPlex 3145eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 31467cd05799SMatthew G. Knepley . conePos - The local index in the cone where the point should be put 31477cd05799SMatthew G. Knepley - coneOrientation - The point orientation to insert 31487cd05799SMatthew G. Knepley 31497cd05799SMatthew G. Knepley Level: beginner 31507cd05799SMatthew G. Knepley 3151b5a892a1SMatthew G. Knepley Notes: 3152b5a892a1SMatthew G. Knepley The meaning of coneOrientation values is detailed in DMPlexGetConeOrientation(). 3153b5a892a1SMatthew G. Knepley 3154db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()` 31557cd05799SMatthew G. Knepley @*/ 315677c88f5bSMatthew G Knepley PetscErrorCode DMPlexInsertConeOrientation(DM dm, PetscInt p, PetscInt conePos, PetscInt coneOrientation) 315777c88f5bSMatthew G Knepley { 315877c88f5bSMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 315977c88f5bSMatthew G Knepley PetscInt pStart, pEnd; 316077c88f5bSMatthew G Knepley PetscInt dof, off; 316177c88f5bSMatthew G Knepley 316277c88f5bSMatthew G Knepley PetscFunctionBegin; 316377c88f5bSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->coneSection, &pStart, &pEnd)); 316563a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 31669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 31679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 316863a3b9bcSJacob Faibussowitsch PetscCheck(!(conePos < 0) && !(conePos >= dof),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone position %" PetscInt_FMT " of point %" PetscInt_FMT " is not in the valid range [0, %" PetscInt_FMT ")", conePos, p, dof); 316977c88f5bSMatthew G Knepley mesh->coneOrientations[off+conePos] = coneOrientation; 317077c88f5bSMatthew G Knepley PetscFunctionReturn(0); 317177c88f5bSMatthew G Knepley } 317277c88f5bSMatthew G Knepley 3173552f7358SJed Brown /*@ 3174eaf898f9SPatrick Sanan DMPlexGetSupportSize - Return the number of out-edges for this point in the DAG 3175552f7358SJed Brown 3176552f7358SJed Brown Not collective 3177552f7358SJed Brown 3178552f7358SJed Brown Input Parameters: 3179552f7358SJed Brown + mesh - The DMPlex 3180eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 3181552f7358SJed Brown 3182552f7358SJed Brown Output Parameter: 3183552f7358SJed Brown . size - The support size for point p 3184552f7358SJed Brown 3185552f7358SJed Brown Level: beginner 3186552f7358SJed Brown 3187db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetConeSize()`, `DMPlexSetChart()`, `DMPlexGetConeSize()` 3188552f7358SJed Brown @*/ 3189552f7358SJed Brown PetscErrorCode DMPlexGetSupportSize(DM dm, PetscInt p, PetscInt *size) 3190552f7358SJed Brown { 3191552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3192552f7358SJed Brown 3193552f7358SJed Brown PetscFunctionBegin; 3194552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3195dadcf809SJacob Faibussowitsch PetscValidIntPointer(size, 3); 31969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, p, size)); 3197552f7358SJed Brown PetscFunctionReturn(0); 3198552f7358SJed Brown } 3199552f7358SJed Brown 3200552f7358SJed Brown /*@ 3201eaf898f9SPatrick Sanan DMPlexSetSupportSize - Set the number of out-edges for this point in the DAG 3202552f7358SJed Brown 3203552f7358SJed Brown Not collective 3204552f7358SJed Brown 3205552f7358SJed Brown Input Parameters: 3206552f7358SJed Brown + mesh - The DMPlex 3207eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 3208552f7358SJed Brown - size - The support size for point p 3209552f7358SJed Brown 3210552f7358SJed Brown Output Parameter: 3211552f7358SJed Brown 3212552f7358SJed Brown Note: 3213552f7358SJed Brown This should be called after DMPlexSetChart(). 3214552f7358SJed Brown 3215552f7358SJed Brown Level: beginner 3216552f7358SJed Brown 3217db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetSupportSize()`, `DMPlexSetChart()` 3218552f7358SJed Brown @*/ 3219552f7358SJed Brown PetscErrorCode DMPlexSetSupportSize(DM dm, PetscInt p, PetscInt size) 3220552f7358SJed Brown { 3221552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3222552f7358SJed Brown 3223552f7358SJed Brown PetscFunctionBegin; 3224552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32259566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(mesh->supportSection, p, size)); 3226552f7358SJed Brown PetscFunctionReturn(0); 3227552f7358SJed Brown } 3228552f7358SJed Brown 3229552f7358SJed Brown /*@C 3230eaf898f9SPatrick Sanan DMPlexGetSupport - Return the points on the out-edges for this point in the DAG 3231552f7358SJed Brown 3232552f7358SJed Brown Not collective 3233552f7358SJed Brown 3234552f7358SJed Brown Input Parameters: 3235552f7358SJed Brown + mesh - The DMPlex 3236eaf898f9SPatrick Sanan - p - The point, which must lie in the chart set with DMPlexSetChart() 3237552f7358SJed Brown 3238552f7358SJed Brown Output Parameter: 3239552f7358SJed Brown . support - An array of points which are on the out-edges for point p 3240552f7358SJed Brown 3241552f7358SJed Brown Level: beginner 3242552f7358SJed Brown 32433813dfbdSMatthew G Knepley Fortran Notes: 32443813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 32453813dfbdSMatthew G Knepley include petsc.h90 in your code. 32463b12b3d8SVaclav Hapla You must also call DMPlexRestoreSupport() after you finish using the returned array. 3247922102d1SVaclav Hapla DMPlexRestoreSupport() is not needed/available in C. 32483813dfbdSMatthew G Knepley 3249db781477SPatrick Sanan .seealso: `DMPlexGetSupportSize()`, `DMPlexSetSupport()`, `DMPlexGetCone()`, `DMPlexSetChart()` 3250552f7358SJed Brown @*/ 3251552f7358SJed Brown PetscErrorCode DMPlexGetSupport(DM dm, PetscInt p, const PetscInt *support[]) 3252552f7358SJed Brown { 3253552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3254552f7358SJed Brown PetscInt off; 3255552f7358SJed Brown 3256552f7358SJed Brown PetscFunctionBegin; 3257552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3258552f7358SJed Brown PetscValidPointer(support, 3); 32599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, p, &off)); 3260552f7358SJed Brown *support = &mesh->supports[off]; 3261552f7358SJed Brown PetscFunctionReturn(0); 3262552f7358SJed Brown } 3263552f7358SJed Brown 3264552f7358SJed Brown /*@ 326592371b87SBarry Smith DMPlexSetSupport - Set the points on the out-edges for this point in the DAG, that is the list of points that this point covers 3266552f7358SJed Brown 3267552f7358SJed Brown Not collective 3268552f7358SJed Brown 3269552f7358SJed Brown Input Parameters: 3270552f7358SJed Brown + mesh - The DMPlex 3271eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 327292371b87SBarry Smith - support - An array of points which are on the out-edges for point p 3273552f7358SJed Brown 3274552f7358SJed Brown Output Parameter: 3275552f7358SJed Brown 3276552f7358SJed Brown Note: 3277552f7358SJed Brown This should be called after all calls to DMPlexSetSupportSize() and DMSetUp(). 3278552f7358SJed Brown 3279552f7358SJed Brown Level: beginner 3280552f7358SJed Brown 3281db781477SPatrick Sanan .seealso: `DMPlexSetCone()`, `DMPlexSetConeSize()`, `DMPlexCreate()`, `DMPlexGetSupport()`, `DMPlexSetChart()`, `DMPlexSetSupportSize()`, `DMSetUp()` 3282552f7358SJed Brown @*/ 3283552f7358SJed Brown PetscErrorCode DMPlexSetSupport(DM dm, PetscInt p, const PetscInt support[]) 3284552f7358SJed Brown { 3285552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3286552f7358SJed Brown PetscInt pStart, pEnd; 3287552f7358SJed Brown PetscInt dof, off, c; 3288552f7358SJed Brown 3289552f7358SJed Brown PetscFunctionBegin; 3290552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->supportSection, &pStart, &pEnd)); 32929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, p, &dof)); 3293dadcf809SJacob Faibussowitsch if (dof) PetscValidIntPointer(support, 3); 32949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, p, &off)); 329563a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 3296552f7358SJed Brown for (c = 0; c < dof; ++c) { 329763a3b9bcSJacob Faibussowitsch PetscCheck(!(support[c] < pStart) && !(support[c] >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Support point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", support[c], pStart, pEnd); 3298552f7358SJed Brown mesh->supports[off+c] = support[c]; 3299552f7358SJed Brown } 3300552f7358SJed Brown PetscFunctionReturn(0); 3301552f7358SJed Brown } 3302552f7358SJed Brown 33037cd05799SMatthew G. Knepley /*@ 3304eaf898f9SPatrick Sanan DMPlexInsertSupport - Insert a point into the out-edges for the point p in the DAG 33057cd05799SMatthew G. Knepley 33067cd05799SMatthew G. Knepley Not collective 33077cd05799SMatthew G. Knepley 33087cd05799SMatthew G. Knepley Input Parameters: 33097cd05799SMatthew G. Knepley + mesh - The DMPlex 3310eaf898f9SPatrick Sanan . p - The point, which must lie in the chart set with DMPlexSetChart() 33117cd05799SMatthew G. Knepley . supportPos - The local index in the cone where the point should be put 33127cd05799SMatthew G. Knepley - supportPoint - The mesh point to insert 33137cd05799SMatthew G. Knepley 33147cd05799SMatthew G. Knepley Level: beginner 33157cd05799SMatthew G. Knepley 3316db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexGetCone()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMSetUp()` 33177cd05799SMatthew G. Knepley @*/ 3318552f7358SJed Brown PetscErrorCode DMPlexInsertSupport(DM dm, PetscInt p, PetscInt supportPos, PetscInt supportPoint) 3319552f7358SJed Brown { 3320552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3321552f7358SJed Brown PetscInt pStart, pEnd; 3322552f7358SJed Brown PetscInt dof, off; 3323552f7358SJed Brown 3324552f7358SJed Brown PetscFunctionBegin; 3325552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(mesh->supportSection, &pStart, &pEnd)); 33279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, p, &dof)); 33289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, p, &off)); 332963a3b9bcSJacob Faibussowitsch PetscCheck(!(p < pStart) && !(p >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", p, pStart, pEnd); 333063a3b9bcSJacob Faibussowitsch PetscCheck(!(supportPoint < pStart) && !(supportPoint >= pEnd),PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Support point %" PetscInt_FMT " is not in the valid range [%" PetscInt_FMT ", %" PetscInt_FMT ")", supportPoint, pStart, pEnd); 333163a3b9bcSJacob Faibussowitsch PetscCheck(supportPos < dof,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Support position %" PetscInt_FMT " of point %" PetscInt_FMT " is not in the valid range [0, %" PetscInt_FMT ")", supportPos, p, dof); 3332552f7358SJed Brown mesh->supports[off+supportPos] = supportPoint; 3333552f7358SJed Brown PetscFunctionReturn(0); 3334552f7358SJed Brown } 3335552f7358SJed Brown 3336b5a892a1SMatthew G. Knepley /* Converts an orientation o in the current numbering to the previous scheme used in Plex */ 3337b5a892a1SMatthew G. Knepley PetscInt DMPolytopeConvertNewOrientation_Internal(DMPolytopeType ct, PetscInt o) 3338b5a892a1SMatthew G. Knepley { 3339b5a892a1SMatthew G. Knepley switch (ct) { 3340b5a892a1SMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 3341b5a892a1SMatthew G. Knepley if (o == -1) return -2; 3342b5a892a1SMatthew G. Knepley break; 3343b5a892a1SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 3344b5a892a1SMatthew G. Knepley if (o == -3) return -1; 3345b5a892a1SMatthew G. Knepley if (o == -2) return -3; 3346b5a892a1SMatthew G. Knepley if (o == -1) return -2; 3347b5a892a1SMatthew G. Knepley break; 3348b5a892a1SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 3349b5a892a1SMatthew G. Knepley if (o == -4) return -2; 3350b5a892a1SMatthew G. Knepley if (o == -3) return -1; 3351b5a892a1SMatthew G. Knepley if (o == -2) return -4; 3352b5a892a1SMatthew G. Knepley if (o == -1) return -3; 3353b5a892a1SMatthew G. Knepley break; 3354b5a892a1SMatthew G. Knepley default: return o; 3355b5a892a1SMatthew G. Knepley } 3356b5a892a1SMatthew G. Knepley return o; 3357b5a892a1SMatthew G. Knepley } 3358b5a892a1SMatthew G. Knepley 3359b5a892a1SMatthew G. Knepley /* Converts an orientation o in the previous scheme used in Plex to the current numbering */ 3360b5a892a1SMatthew G. Knepley PetscInt DMPolytopeConvertOldOrientation_Internal(DMPolytopeType ct, PetscInt o) 3361b5a892a1SMatthew G. Knepley { 3362b5a892a1SMatthew G. Knepley switch (ct) { 3363b5a892a1SMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 3364b5a892a1SMatthew G. Knepley if ((o == -2) || (o == 1)) return -1; 3365b5a892a1SMatthew G. Knepley if (o == -1) return 0; 3366b5a892a1SMatthew G. Knepley break; 3367b5a892a1SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 3368b5a892a1SMatthew G. Knepley if (o == -3) return -2; 3369b5a892a1SMatthew G. Knepley if (o == -2) return -1; 3370b5a892a1SMatthew G. Knepley if (o == -1) return -3; 3371b5a892a1SMatthew G. Knepley break; 3372b5a892a1SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 3373b5a892a1SMatthew G. Knepley if (o == -4) return -2; 3374b5a892a1SMatthew G. Knepley if (o == -3) return -1; 3375b5a892a1SMatthew G. Knepley if (o == -2) return -4; 3376b5a892a1SMatthew G. Knepley if (o == -1) return -3; 3377b5a892a1SMatthew G. Knepley break; 3378b5a892a1SMatthew G. Knepley default: return o; 3379b5a892a1SMatthew G. Knepley } 3380b5a892a1SMatthew G. Knepley return o; 3381b5a892a1SMatthew G. Knepley } 3382b5a892a1SMatthew G. Knepley 3383b5a892a1SMatthew G. Knepley /* Takes in a mesh whose orientations are in the previous scheme and converts them all to the current numbering */ 3384b5a892a1SMatthew G. Knepley PetscErrorCode DMPlexConvertOldOrientations_Internal(DM dm) 3385b5a892a1SMatthew G. Knepley { 3386b5a892a1SMatthew G. Knepley PetscInt pStart, pEnd, p; 3387b5a892a1SMatthew G. Knepley 3388b5a892a1SMatthew G. Knepley PetscFunctionBegin; 33899566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 3390b5a892a1SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3391b5a892a1SMatthew G. Knepley const PetscInt *cone, *ornt; 3392b5a892a1SMatthew G. Knepley PetscInt coneSize, c; 3393b5a892a1SMatthew G. Knepley 33949566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 33959566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 33969566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &ornt)); 3397b5a892a1SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 3398b5a892a1SMatthew G. Knepley DMPolytopeType ct; 3399b5a892a1SMatthew G. Knepley const PetscInt o = ornt[c]; 3400b5a892a1SMatthew G. Knepley 34019566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[c], &ct)); 3402b5a892a1SMatthew G. Knepley switch (ct) { 3403b5a892a1SMatthew G. Knepley case DM_POLYTOPE_SEGMENT: 34049566063dSJacob Faibussowitsch if ((o == -2) || (o == 1)) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -1)); 34059566063dSJacob Faibussowitsch if (o == -1) PetscCall(DMPlexInsertConeOrientation(dm, p, c, 0)); 3406b5a892a1SMatthew G. Knepley break; 3407b5a892a1SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 34089566063dSJacob Faibussowitsch if (o == -3) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -2)); 34099566063dSJacob Faibussowitsch if (o == -2) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -1)); 34109566063dSJacob Faibussowitsch if (o == -1) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -3)); 3411b5a892a1SMatthew G. Knepley break; 3412b5a892a1SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 34139566063dSJacob Faibussowitsch if (o == -4) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -2)); 34149566063dSJacob Faibussowitsch if (o == -3) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -1)); 34159566063dSJacob Faibussowitsch if (o == -2) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -4)); 34169566063dSJacob Faibussowitsch if (o == -1) PetscCall(DMPlexInsertConeOrientation(dm, p, c, -3)); 3417b5a892a1SMatthew G. Knepley break; 3418b5a892a1SMatthew G. Knepley default: break; 3419b5a892a1SMatthew G. Knepley } 3420b5a892a1SMatthew G. Knepley } 3421b5a892a1SMatthew G. Knepley } 3422b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3423b5a892a1SMatthew G. Knepley } 3424b5a892a1SMatthew G. Knepley 3425012bc364SMatthew G. Knepley static PetscErrorCode DMPlexGetTransitiveClosure_Depth1_Private(DM dm, PetscInt p, PetscInt ornt, PetscBool useCone, PetscInt *numPoints, PetscInt *points[]) 3426b5a892a1SMatthew G. Knepley { 3427b5a892a1SMatthew G. Knepley DMPolytopeType ct = DM_POLYTOPE_UNKNOWN; 3428b5a892a1SMatthew G. Knepley PetscInt *closure; 3429b5a892a1SMatthew G. Knepley const PetscInt *tmp = NULL, *tmpO = NULL; 3430b5a892a1SMatthew G. Knepley PetscInt off = 0, tmpSize, t; 3431b5a892a1SMatthew G. Knepley 3432b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 3433b5a892a1SMatthew G. Knepley if (ornt) { 34349566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 3435b5a892a1SMatthew G. Knepley if (ct == DM_POLYTOPE_FV_GHOST || ct == DM_POLYTOPE_INTERIOR_GHOST || ct == DM_POLYTOPE_UNKNOWN) ct = DM_POLYTOPE_UNKNOWN; 3436b5a892a1SMatthew G. Knepley } 3437b5a892a1SMatthew G. Knepley if (*points) { 3438b5a892a1SMatthew G. Knepley closure = *points; 3439b5a892a1SMatthew G. Knepley } else { 3440b5a892a1SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize; 34419566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 34429566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, 2*(PetscMax(maxConeSize, maxSupportSize)+1), MPIU_INT, &closure)); 3443b5a892a1SMatthew G. Knepley } 3444b5a892a1SMatthew G. Knepley if (useCone) { 34459566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &tmpSize)); 34469566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &tmp)); 34479566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &tmpO)); 3448b5a892a1SMatthew G. Knepley } else { 34499566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &tmpSize)); 34509566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &tmp)); 3451b5a892a1SMatthew G. Knepley } 3452b5a892a1SMatthew G. Knepley if (ct == DM_POLYTOPE_UNKNOWN) { 3453b5a892a1SMatthew G. Knepley closure[off++] = p; 3454b5a892a1SMatthew G. Knepley closure[off++] = 0; 3455b5a892a1SMatthew G. Knepley for (t = 0; t < tmpSize; ++t) { 3456b5a892a1SMatthew G. Knepley closure[off++] = tmp[t]; 3457b5a892a1SMatthew G. Knepley closure[off++] = tmpO ? tmpO[t] : 0; 3458b5a892a1SMatthew G. Knepley } 3459b5a892a1SMatthew G. Knepley } else { 34605f80ce2aSJacob Faibussowitsch const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, ornt); 3461b5a892a1SMatthew G. Knepley 3462b5a892a1SMatthew G. Knepley /* We assume that cells with a valid type have faces with a valid type */ 3463b5a892a1SMatthew G. Knepley closure[off++] = p; 3464b5a892a1SMatthew G. Knepley closure[off++] = ornt; 3465b5a892a1SMatthew G. Knepley for (t = 0; t < tmpSize; ++t) { 3466b5a892a1SMatthew G. Knepley DMPolytopeType ft; 3467b5a892a1SMatthew G. Knepley 34689566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, tmp[t], &ft)); 3469b5a892a1SMatthew G. Knepley closure[off++] = tmp[arr[t]]; 3470b5a892a1SMatthew G. Knepley closure[off++] = tmpO ? DMPolytopeTypeComposeOrientation(ft, ornt, tmpO[t]) : 0; 3471b5a892a1SMatthew G. Knepley } 3472b5a892a1SMatthew G. Knepley } 3473b5a892a1SMatthew G. Knepley if (numPoints) *numPoints = tmpSize+1; 3474b5a892a1SMatthew G. Knepley if (points) *points = closure; 3475b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3476b5a892a1SMatthew G. Knepley } 3477b5a892a1SMatthew G. Knepley 3478b5a892a1SMatthew G. Knepley /* We need a special tensor verison becasue we want to allow duplicate points in the endcaps for hybrid cells */ 3479b5a892a1SMatthew G. Knepley static PetscErrorCode DMPlexTransitiveClosure_Tensor_Internal(DM dm, PetscInt point, DMPolytopeType ct, PetscInt o, PetscBool useCone, PetscInt *numPoints, PetscInt **points) 3480b5a892a1SMatthew G. Knepley { 3481b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, o); 3482b5a892a1SMatthew G. Knepley const PetscInt *cone, *ornt; 3483b5a892a1SMatthew G. Knepley PetscInt *pts, *closure = NULL; 3484b5a892a1SMatthew G. Knepley DMPolytopeType ft; 3485b5a892a1SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize, coneSeries, supportSeries, maxSize; 3486b5a892a1SMatthew G. Knepley PetscInt dim, coneSize, c, d, clSize, cl; 3487b5a892a1SMatthew G. Knepley 3488b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 34899566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 34909566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 34919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 34929566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 34939566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 3494b5a892a1SMatthew G. Knepley coneSeries = (maxConeSize > 1) ? ((PetscPowInt(maxConeSize, dim+1)-1)/(maxConeSize-1)) : dim+1; 3495b5a892a1SMatthew G. Knepley supportSeries = (maxSupportSize > 1) ? ((PetscPowInt(maxSupportSize, dim+1)-1)/(maxSupportSize-1)) : dim+1; 3496b5a892a1SMatthew G. Knepley maxSize = PetscMax(coneSeries, supportSeries); 3497b5a892a1SMatthew G. Knepley if (*points) {pts = *points;} 34989566063dSJacob Faibussowitsch else PetscCall(DMGetWorkArray(dm, 2*maxSize, MPIU_INT, &pts)); 3499b5a892a1SMatthew G. Knepley c = 0; 3500b5a892a1SMatthew G. Knepley pts[c++] = point; 3501b5a892a1SMatthew G. Knepley pts[c++] = o; 35029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[arr[0*2+0]], &ft)); 35039566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Internal(dm, cone[arr[0*2+0]], DMPolytopeTypeComposeOrientation(ft, arr[0*2+1], ornt[0]), useCone, &clSize, &closure)); 3504b5a892a1SMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) {pts[c++] = closure[cl]; pts[c++] = closure[cl+1];} 35059566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Internal(dm, cone[arr[1*2+0]], DMPolytopeTypeComposeOrientation(ft, arr[1*2+1], ornt[1]), useCone, &clSize, &closure)); 3506b5a892a1SMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) {pts[c++] = closure[cl]; pts[c++] = closure[cl+1];} 35079566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], useCone, &clSize, &closure)); 3508b5a892a1SMatthew G. Knepley for (d = 2; d < coneSize; ++d) { 35099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[arr[d*2+0]], &ft)); 3510b5a892a1SMatthew G. Knepley pts[c++] = cone[arr[d*2+0]]; 3511b5a892a1SMatthew G. Knepley pts[c++] = DMPolytopeTypeComposeOrientation(ft, arr[d*2+1], ornt[d]); 3512b5a892a1SMatthew G. Knepley } 3513b5a892a1SMatthew G. Knepley if (dim >= 3) { 3514b5a892a1SMatthew G. Knepley for (d = 2; d < coneSize; ++d) { 3515b5a892a1SMatthew G. Knepley const PetscInt fpoint = cone[arr[d*2+0]]; 3516b5a892a1SMatthew G. Knepley const PetscInt *fcone, *fornt; 3517b5a892a1SMatthew G. Knepley PetscInt fconeSize, fc, i; 3518b5a892a1SMatthew G. Knepley 35199566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, fpoint, &ft)); 3520b5a892a1SMatthew G. Knepley const PetscInt *farr = DMPolytopeTypeGetArrangment(ft, DMPolytopeTypeComposeOrientation(ft, arr[d*2+1], ornt[d])); 35219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, fpoint, &fconeSize)); 35229566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, fpoint, &fcone)); 35239566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, fpoint, &fornt)); 3524b5a892a1SMatthew G. Knepley for (fc = 0; fc < fconeSize; ++fc) { 3525b5a892a1SMatthew G. Knepley const PetscInt cp = fcone[farr[fc*2+0]]; 3526b5a892a1SMatthew G. Knepley const PetscInt co = farr[fc*2+1]; 3527b5a892a1SMatthew G. Knepley 3528b5a892a1SMatthew G. Knepley for (i = 0; i < c; i += 2) if (pts[i] == cp) break; 3529b5a892a1SMatthew G. Knepley if (i == c) { 35309566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cp, &ft)); 3531b5a892a1SMatthew G. Knepley pts[c++] = cp; 3532b5a892a1SMatthew G. Knepley pts[c++] = DMPolytopeTypeComposeOrientation(ft, co, fornt[farr[fc*2+0]]); 3533b5a892a1SMatthew G. Knepley } 3534b5a892a1SMatthew G. Knepley } 3535b5a892a1SMatthew G. Knepley } 3536b5a892a1SMatthew G. Knepley } 3537b5a892a1SMatthew G. Knepley *numPoints = c/2; 3538b5a892a1SMatthew G. Knepley *points = pts; 3539b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3540b5a892a1SMatthew G. Knepley } 3541b5a892a1SMatthew G. Knepley 3542b5a892a1SMatthew G. Knepley PetscErrorCode DMPlexGetTransitiveClosure_Internal(DM dm, PetscInt p, PetscInt ornt, PetscBool useCone, PetscInt *numPoints, PetscInt *points[]) 3543b5a892a1SMatthew G. Knepley { 3544b5a892a1SMatthew G. Knepley DMPolytopeType ct; 3545b5a892a1SMatthew G. Knepley PetscInt *closure, *fifo; 3546b5a892a1SMatthew G. Knepley PetscInt closureSize = 0, fifoStart = 0, fifoSize = 0; 3547b5a892a1SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize, coneSeries, supportSeries; 3548b5a892a1SMatthew G. Knepley PetscInt depth, maxSize; 3549b5a892a1SMatthew G. Knepley 3550b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 35519566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 3552b5a892a1SMatthew G. Knepley if (depth == 1) { 35539566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Depth1_Private(dm, p, ornt, useCone, numPoints, points)); 3554b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3555b5a892a1SMatthew G. Knepley } 35569566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 3557b5a892a1SMatthew G. Knepley if (ct == DM_POLYTOPE_FV_GHOST || ct == DM_POLYTOPE_INTERIOR_GHOST || ct == DM_POLYTOPE_UNKNOWN) ct = DM_POLYTOPE_UNKNOWN; 3558b5a892a1SMatthew G. Knepley if (ct == DM_POLYTOPE_SEG_PRISM_TENSOR || ct == DM_POLYTOPE_TRI_PRISM_TENSOR || ct == DM_POLYTOPE_QUAD_PRISM_TENSOR) { 35599566063dSJacob Faibussowitsch PetscCall(DMPlexTransitiveClosure_Tensor_Internal(dm, p, ct, ornt, useCone, numPoints, points)); 3560b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3561b5a892a1SMatthew G. Knepley } 35629566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 3563b5a892a1SMatthew G. Knepley coneSeries = (maxConeSize > 1) ? ((PetscPowInt(maxConeSize, depth+1)-1)/(maxConeSize-1)) : depth+1; 3564b5a892a1SMatthew G. Knepley supportSeries = (maxSupportSize > 1) ? ((PetscPowInt(maxSupportSize, depth+1)-1)/(maxSupportSize-1)) : depth+1; 3565b5a892a1SMatthew G. Knepley maxSize = PetscMax(coneSeries, supportSeries); 35669566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, 3*maxSize, MPIU_INT, &fifo)); 3567b5a892a1SMatthew G. Knepley if (*points) {closure = *points;} 35689566063dSJacob Faibussowitsch else PetscCall(DMGetWorkArray(dm, 2*maxSize, MPIU_INT, &closure)); 3569b5a892a1SMatthew G. Knepley closure[closureSize++] = p; 3570b5a892a1SMatthew G. Knepley closure[closureSize++] = ornt; 3571b5a892a1SMatthew G. Knepley fifo[fifoSize++] = p; 3572b5a892a1SMatthew G. Knepley fifo[fifoSize++] = ornt; 3573b5a892a1SMatthew G. Knepley fifo[fifoSize++] = ct; 3574b5a892a1SMatthew G. Knepley /* Should kick out early when depth is reached, rather than checking all vertices for empty cones */ 3575b5a892a1SMatthew G. Knepley while (fifoSize - fifoStart) { 3576b5a892a1SMatthew G. Knepley const PetscInt q = fifo[fifoStart++]; 3577b5a892a1SMatthew G. Knepley const PetscInt o = fifo[fifoStart++]; 3578b5a892a1SMatthew G. Knepley const DMPolytopeType qt = (DMPolytopeType) fifo[fifoStart++]; 3579b5a892a1SMatthew G. Knepley const PetscInt *qarr = DMPolytopeTypeGetArrangment(qt, o); 3580b5a892a1SMatthew G. Knepley const PetscInt *tmp, *tmpO; 3581b5a892a1SMatthew G. Knepley PetscInt tmpSize, t; 3582b5a892a1SMatthew G. Knepley 3583b5a892a1SMatthew G. Knepley if (PetscDefined(USE_DEBUG)) { 3584b5a892a1SMatthew G. Knepley PetscInt nO = DMPolytopeTypeGetNumArrangments(qt)/2; 358563a3b9bcSJacob Faibussowitsch PetscCheck(!o || !(o >= nO || o < -nO),PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid orientation %" PetscInt_FMT " not in [%" PetscInt_FMT ",%" PetscInt_FMT ") for %s %" PetscInt_FMT, o, -nO, nO, DMPolytopeTypes[qt], q); 3586b5a892a1SMatthew G. Knepley } 3587b5a892a1SMatthew G. Knepley if (useCone) { 35889566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, q, &tmpSize)); 35899566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, q, &tmp)); 35909566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, q, &tmpO)); 3591b5a892a1SMatthew G. Knepley } else { 35929566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, q, &tmpSize)); 35939566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, q, &tmp)); 3594b5a892a1SMatthew G. Knepley tmpO = NULL; 3595b5a892a1SMatthew G. Knepley } 3596b5a892a1SMatthew G. Knepley for (t = 0; t < tmpSize; ++t) { 3597b5a892a1SMatthew G. Knepley const PetscInt ip = useCone && qarr ? qarr[t*2] : t; 3598b5a892a1SMatthew G. Knepley const PetscInt io = useCone && qarr ? qarr[t*2+1] : 0; 3599b5a892a1SMatthew G. Knepley const PetscInt cp = tmp[ip]; 36009566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cp, &ct)); 3601b5a892a1SMatthew G. Knepley const PetscInt co = tmpO ? DMPolytopeTypeComposeOrientation(ct, io, tmpO[ip]) : 0; 3602b5a892a1SMatthew G. Knepley PetscInt c; 3603b5a892a1SMatthew G. Knepley 3604b5a892a1SMatthew G. Knepley /* Check for duplicate */ 3605b5a892a1SMatthew G. Knepley for (c = 0; c < closureSize; c += 2) { 3606b5a892a1SMatthew G. Knepley if (closure[c] == cp) break; 3607b5a892a1SMatthew G. Knepley } 3608b5a892a1SMatthew G. Knepley if (c == closureSize) { 3609b5a892a1SMatthew G. Knepley closure[closureSize++] = cp; 3610b5a892a1SMatthew G. Knepley closure[closureSize++] = co; 3611b5a892a1SMatthew G. Knepley fifo[fifoSize++] = cp; 3612b5a892a1SMatthew G. Knepley fifo[fifoSize++] = co; 3613b5a892a1SMatthew G. Knepley fifo[fifoSize++] = ct; 3614b5a892a1SMatthew G. Knepley } 3615b5a892a1SMatthew G. Knepley } 3616b5a892a1SMatthew G. Knepley } 36179566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 3*maxSize, MPIU_INT, &fifo)); 3618b5a892a1SMatthew G. Knepley if (numPoints) *numPoints = closureSize/2; 3619b5a892a1SMatthew G. Knepley if (points) *points = closure; 3620b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 3621b5a892a1SMatthew G. Knepley } 3622b5a892a1SMatthew G. Knepley 3623552f7358SJed Brown /*@C 3624eaf898f9SPatrick Sanan DMPlexGetTransitiveClosure - Return the points on the transitive closure of the in-edges or out-edges for this point in the DAG 3625552f7358SJed Brown 3626552f7358SJed Brown Not collective 3627552f7358SJed Brown 3628552f7358SJed Brown Input Parameters: 3629b5a892a1SMatthew G. Knepley + dm - The DMPlex 3630b5a892a1SMatthew G. Knepley . p - The mesh point 36316b867d5aSJose E. Roman - useCone - PETSC_TRUE for the closure, otherwise return the star 3632552f7358SJed Brown 36336b867d5aSJose E. Roman Input/Output Parameter: 36346b867d5aSJose E. Roman . points - The points and point orientations, interleaved as pairs [p0, o0, p1, o1, ...]; 36356b867d5aSJose E. Roman if NULL on input, internal storage will be returned, otherwise the provided array is used 36366b867d5aSJose E. Roman 36376b867d5aSJose E. Roman Output Parameter: 36386b867d5aSJose E. Roman . numPoints - The number of points in the closure, so points[] is of size 2*numPoints 3639552f7358SJed Brown 3640552f7358SJed Brown Note: 36410298fd71SBarry Smith If using internal storage (points is NULL on input), each call overwrites the last output. 3642552f7358SJed Brown 36433813dfbdSMatthew G Knepley Fortran Notes: 3644b5a892a1SMatthew G. Knepley Since it returns an array, this routine is only available in Fortran 90, and you must include petsc.h90 in your code. 36453813dfbdSMatthew G Knepley 36463813dfbdSMatthew G Knepley The numPoints argument is not present in the Fortran 90 binding since it is internal to the array. 36473813dfbdSMatthew G Knepley 3648552f7358SJed Brown Level: beginner 3649552f7358SJed Brown 3650db781477SPatrick Sanan .seealso: `DMPlexRestoreTransitiveClosure()`, `DMPlexCreate()`, `DMPlexSetCone()`, `DMPlexSetChart()`, `DMPlexGetCone()` 3651552f7358SJed Brown @*/ 3652552f7358SJed Brown PetscErrorCode DMPlexGetTransitiveClosure(DM dm, PetscInt p, PetscBool useCone, PetscInt *numPoints, PetscInt *points[]) 3653552f7358SJed Brown { 3654b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 3655552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3656b5a892a1SMatthew G. Knepley if (numPoints) PetscValidIntPointer(numPoints, 4); 3657b5a892a1SMatthew G. Knepley if (points) PetscValidPointer(points, 5); 36589566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Internal(dm, p, 0, useCone, numPoints, points)); 36599bf0dad6SMatthew G. Knepley PetscFunctionReturn(0); 36609bf0dad6SMatthew G. Knepley } 36619bf0dad6SMatthew G. Knepley 3662552f7358SJed Brown /*@C 3663eaf898f9SPatrick Sanan DMPlexRestoreTransitiveClosure - Restore the array of points on the transitive closure of the in-edges or out-edges for this point in the DAG 3664552f7358SJed Brown 3665552f7358SJed Brown Not collective 3666552f7358SJed Brown 3667552f7358SJed Brown Input Parameters: 3668b5a892a1SMatthew G. Knepley + dm - The DMPlex 3669b5a892a1SMatthew G. Knepley . p - The mesh point 3670b5a892a1SMatthew G. Knepley . useCone - PETSC_TRUE for the closure, otherwise return the star 3671b5a892a1SMatthew G. Knepley . numPoints - The number of points in the closure, so points[] is of size 2*numPoints 3672b5a892a1SMatthew G. Knepley - points - The points and point orientations, interleaved as pairs [p0, o0, p1, o1, ...] 3673552f7358SJed Brown 3674552f7358SJed Brown Note: 36750298fd71SBarry Smith If not using internal storage (points is not NULL on input), this call is unnecessary 3676552f7358SJed Brown 36773813dfbdSMatthew G Knepley Fortran Notes: 3678b5a892a1SMatthew G. Knepley Since it returns an array, this routine is only available in Fortran 90, and you must include petsc.h90 in your code. 36793813dfbdSMatthew G Knepley 36803813dfbdSMatthew G Knepley The numPoints argument is not present in the Fortran 90 binding since it is internal to the array. 36813813dfbdSMatthew G Knepley 3682552f7358SJed Brown Level: beginner 3683552f7358SJed Brown 3684db781477SPatrick Sanan .seealso: `DMPlexGetTransitiveClosure()`, `DMPlexCreate()`, `DMPlexSetCone()`, `DMPlexSetChart()`, `DMPlexGetCone()` 3685552f7358SJed Brown @*/ 3686552f7358SJed Brown PetscErrorCode DMPlexRestoreTransitiveClosure(DM dm, PetscInt p, PetscBool useCone, PetscInt *numPoints, PetscInt *points[]) 3687552f7358SJed Brown { 3688b5a892a1SMatthew G. Knepley PetscFunctionBeginHot; 3689552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36904ff43b2cSJed Brown if (numPoints) *numPoints = 0; 36919566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_INT, points)); 3692552f7358SJed Brown PetscFunctionReturn(0); 3693552f7358SJed Brown } 3694552f7358SJed Brown 3695552f7358SJed Brown /*@ 3696eaf898f9SPatrick Sanan DMPlexGetMaxSizes - Return the maximum number of in-edges (cone) and out-edges (support) for any point in the DAG 3697552f7358SJed Brown 3698552f7358SJed Brown Not collective 3699552f7358SJed Brown 3700552f7358SJed Brown Input Parameter: 3701552f7358SJed Brown . mesh - The DMPlex 3702552f7358SJed Brown 3703552f7358SJed Brown Output Parameters: 3704552f7358SJed Brown + maxConeSize - The maximum number of in-edges 3705552f7358SJed Brown - maxSupportSize - The maximum number of out-edges 3706552f7358SJed Brown 3707552f7358SJed Brown Level: beginner 3708552f7358SJed Brown 3709db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetConeSize()`, `DMPlexSetChart()` 3710552f7358SJed Brown @*/ 3711552f7358SJed Brown PetscErrorCode DMPlexGetMaxSizes(DM dm, PetscInt *maxConeSize, PetscInt *maxSupportSize) 3712552f7358SJed Brown { 3713552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3714552f7358SJed Brown 3715552f7358SJed Brown PetscFunctionBegin; 3716552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37176302a7fbSVaclav Hapla if (maxConeSize) { 37186302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->coneSection, maxConeSize)); 37196302a7fbSVaclav Hapla } 37206302a7fbSVaclav Hapla if (maxSupportSize) { 37216302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->supportSection, maxSupportSize)); 37226302a7fbSVaclav Hapla } 3723552f7358SJed Brown PetscFunctionReturn(0); 3724552f7358SJed Brown } 3725552f7358SJed Brown 3726552f7358SJed Brown PetscErrorCode DMSetUp_Plex(DM dm) 3727552f7358SJed Brown { 3728552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 37296302a7fbSVaclav Hapla PetscInt size, maxSupportSize; 3730552f7358SJed Brown 3731552f7358SJed Brown PetscFunctionBegin; 3732552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37339566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(mesh->coneSection)); 37349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(mesh->coneSection, &size)); 37359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &mesh->cones)); 37369566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &mesh->coneOrientations)); 37379566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject) dm, size*2*sizeof(PetscInt))); 37386302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->supportSection, &maxSupportSize)); 37396302a7fbSVaclav Hapla if (maxSupportSize) { 37409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(mesh->supportSection)); 37419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(mesh->supportSection, &size)); 37429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &mesh->supports)); 37439566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject) dm, size*sizeof(PetscInt))); 3744552f7358SJed Brown } 3745552f7358SJed Brown PetscFunctionReturn(0); 3746552f7358SJed Brown } 3747552f7358SJed Brown 3748276c5506SMatthew G. Knepley PetscErrorCode DMCreateSubDM_Plex(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 3749552f7358SJed Brown { 3750552f7358SJed Brown PetscFunctionBegin; 37519566063dSJacob Faibussowitsch if (subdm) PetscCall(DMClone(dm, subdm)); 37529566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSubDM(dm, numFields, fields, is, subdm)); 3753c2939958SSatish Balay if (subdm) {(*subdm)->useNatural = dm->useNatural;} 3754736995cdSBlaise Bourdin if (dm->useNatural && dm->sfMigration) { 3755f94b4a02SBlaise Bourdin PetscSF sfMigrationInv,sfNatural; 3756f94b4a02SBlaise Bourdin PetscSection section, sectionSeq; 3757f94b4a02SBlaise Bourdin 37583dcd263cSBlaise Bourdin (*subdm)->sfMigration = dm->sfMigration; 37599566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dm->sfMigration)); 37609566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection((*subdm), §ion)); 37619566063dSJacob Faibussowitsch PetscCall(PetscSFCreateInverseSF((*subdm)->sfMigration, &sfMigrationInv)); 37629566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject) (*subdm)), §ionSeq)); 37639566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(sfMigrationInv, section, NULL, sectionSeq)); 3764f94b4a02SBlaise Bourdin 37659566063dSJacob Faibussowitsch PetscCall(DMPlexCreateGlobalToNaturalSF(*subdm, sectionSeq, (*subdm)->sfMigration, &sfNatural)); 3766c40e9495SBlaise Bourdin (*subdm)->sfNatural = sfNatural; 37679566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ionSeq)); 37689566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigrationInv)); 3769f94b4a02SBlaise Bourdin } 3770552f7358SJed Brown PetscFunctionReturn(0); 3771552f7358SJed Brown } 3772552f7358SJed Brown 37732adcc780SMatthew G. Knepley PetscErrorCode DMCreateSuperDM_Plex(DM dms[], PetscInt len, IS **is, DM *superdm) 37742adcc780SMatthew G. Knepley { 37753dcd263cSBlaise Bourdin PetscInt i = 0; 37762adcc780SMatthew G. Knepley 37772adcc780SMatthew G. Knepley PetscFunctionBegin; 37789566063dSJacob Faibussowitsch PetscCall(DMClone(dms[0], superdm)); 37799566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSuperDM(dms, len, is, superdm)); 3780c40e9495SBlaise Bourdin (*superdm)->useNatural = PETSC_FALSE; 37813dcd263cSBlaise Bourdin for (i = 0; i < len; i++) { 37823dcd263cSBlaise Bourdin if (dms[i]->useNatural && dms[i]->sfMigration) { 37833dcd263cSBlaise Bourdin PetscSF sfMigrationInv,sfNatural; 37843dcd263cSBlaise Bourdin PetscSection section, sectionSeq; 37853dcd263cSBlaise Bourdin 37863dcd263cSBlaise Bourdin (*superdm)->sfMigration = dms[i]->sfMigration; 37879566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dms[i]->sfMigration)); 3788c40e9495SBlaise Bourdin (*superdm)->useNatural = PETSC_TRUE; 37899566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection((*superdm), §ion)); 37909566063dSJacob Faibussowitsch PetscCall(PetscSFCreateInverseSF((*superdm)->sfMigration, &sfMigrationInv)); 37919566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject) (*superdm)), §ionSeq)); 37929566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(sfMigrationInv, section, NULL, sectionSeq)); 37933dcd263cSBlaise Bourdin 37949566063dSJacob Faibussowitsch PetscCall(DMPlexCreateGlobalToNaturalSF(*superdm, sectionSeq, (*superdm)->sfMigration, &sfNatural)); 3795c40e9495SBlaise Bourdin (*superdm)->sfNatural = sfNatural; 37969566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ionSeq)); 37979566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigrationInv)); 37983dcd263cSBlaise Bourdin break; 37993dcd263cSBlaise Bourdin } 38003dcd263cSBlaise Bourdin } 38012adcc780SMatthew G. Knepley PetscFunctionReturn(0); 38022adcc780SMatthew G. Knepley } 38032adcc780SMatthew G. Knepley 3804552f7358SJed Brown /*@ 3805eaf898f9SPatrick Sanan DMPlexSymmetrize - Create support (out-edge) information from cone (in-edge) information 3806552f7358SJed Brown 3807552f7358SJed Brown Not collective 3808552f7358SJed Brown 3809552f7358SJed Brown Input Parameter: 3810552f7358SJed Brown . mesh - The DMPlex 3811552f7358SJed Brown 3812552f7358SJed Brown Output Parameter: 3813552f7358SJed Brown 3814552f7358SJed Brown Note: 3815552f7358SJed Brown This should be called after all calls to DMPlexSetCone() 3816552f7358SJed Brown 3817552f7358SJed Brown Level: beginner 3818552f7358SJed Brown 3819db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSetChart()`, `DMPlexSetConeSize()`, `DMPlexSetCone()` 3820552f7358SJed Brown @*/ 3821552f7358SJed Brown PetscErrorCode DMPlexSymmetrize(DM dm) 3822552f7358SJed Brown { 3823552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 3824552f7358SJed Brown PetscInt *offsets; 3825552f7358SJed Brown PetscInt supportSize; 3826552f7358SJed Brown PetscInt pStart, pEnd, p; 3827552f7358SJed Brown 3828552f7358SJed Brown PetscFunctionBegin; 3829552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 383028b400f6SJacob Faibussowitsch PetscCheck(!mesh->supports,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Supports were already setup in this DMPlex"); 38319566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Symmetrize,dm,0,0,0)); 3832552f7358SJed Brown /* Calculate support sizes */ 38339566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 3834552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 3835552f7358SJed Brown PetscInt dof, off, c; 3836552f7358SJed Brown 38379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 38389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 3839552f7358SJed Brown for (c = off; c < off+dof; ++c) { 38409566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(mesh->supportSection, mesh->cones[c], 1)); 3841552f7358SJed Brown } 3842552f7358SJed Brown } 38439566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(mesh->supportSection)); 3844552f7358SJed Brown /* Calculate supports */ 38459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(mesh->supportSection, &supportSize)); 38469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(supportSize, &mesh->supports)); 38479566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pEnd - pStart, &offsets)); 3848552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 3849552f7358SJed Brown PetscInt dof, off, c; 3850552f7358SJed Brown 38519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, p, &dof)); 38529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, p, &off)); 3853552f7358SJed Brown for (c = off; c < off+dof; ++c) { 3854552f7358SJed Brown const PetscInt q = mesh->cones[c]; 3855552f7358SJed Brown PetscInt offS; 3856552f7358SJed Brown 38579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, q, &offS)); 38580d644c17SKarl Rupp 3859552f7358SJed Brown mesh->supports[offS+offsets[q]] = p; 3860552f7358SJed Brown ++offsets[q]; 3861552f7358SJed Brown } 3862552f7358SJed Brown } 38639566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 38649566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Symmetrize,dm,0,0,0)); 3865552f7358SJed Brown PetscFunctionReturn(0); 3866552f7358SJed Brown } 3867552f7358SJed Brown 3868277ea44aSLisandro Dalcin static PetscErrorCode DMPlexCreateDepthStratum(DM dm, DMLabel label, PetscInt depth, PetscInt pStart, PetscInt pEnd) 3869277ea44aSLisandro Dalcin { 3870277ea44aSLisandro Dalcin IS stratumIS; 3871277ea44aSLisandro Dalcin 3872277ea44aSLisandro Dalcin PetscFunctionBegin; 3873277ea44aSLisandro Dalcin if (pStart >= pEnd) PetscFunctionReturn(0); 387476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 3875277ea44aSLisandro Dalcin PetscInt qStart, qEnd, numLevels, level; 3876277ea44aSLisandro Dalcin PetscBool overlap = PETSC_FALSE; 38779566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numLevels)); 3878277ea44aSLisandro Dalcin for (level = 0; level < numLevels; level++) { 38799566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(label, level, &qStart, &qEnd)); 3880277ea44aSLisandro Dalcin if ((pStart >= qStart && pStart < qEnd) || (pEnd > qStart && pEnd <= qEnd)) {overlap = PETSC_TRUE; break;} 3881277ea44aSLisandro Dalcin } 388263a3b9bcSJacob Faibussowitsch PetscCheck(!overlap,PETSC_COMM_SELF, PETSC_ERR_PLIB, "New depth %" PetscInt_FMT " range [%" PetscInt_FMT ",%" PetscInt_FMT ") overlaps with depth %" PetscInt_FMT " range [%" PetscInt_FMT ",%" PetscInt_FMT ")", depth, pStart, pEnd, level, qStart, qEnd); 3883277ea44aSLisandro Dalcin } 38849566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEnd-pStart, pStart, 1, &stratumIS)); 38859566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, depth, stratumIS)); 38869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&stratumIS)); 3887277ea44aSLisandro Dalcin PetscFunctionReturn(0); 3888277ea44aSLisandro Dalcin } 3889277ea44aSLisandro Dalcin 3890552f7358SJed Brown /*@ 3891a8d69d7bSBarry Smith DMPlexStratify - The DAG for most topologies is a graded poset (https://en.wikipedia.org/wiki/Graded_poset), and 38926dd80730SBarry Smith can be illustrated by a Hasse Diagram (https://en.wikipedia.org/wiki/Hasse_diagram). The strata group all points of the 3893552f7358SJed Brown same grade, and this function calculates the strata. This grade can be seen as the height (or depth) of the point in 3894552f7358SJed Brown the DAG. 3895552f7358SJed Brown 3896bf4602e4SToby Isaac Collective on dm 3897552f7358SJed Brown 3898552f7358SJed Brown Input Parameter: 3899552f7358SJed Brown . mesh - The DMPlex 3900552f7358SJed Brown 3901552f7358SJed Brown Output Parameter: 3902552f7358SJed Brown 3903552f7358SJed Brown Notes: 3904b1bb481bSMatthew Knepley Concretely, DMPlexStratify() creates a new label named "depth" containing the depth in the DAG of each point. For cell-vertex 3905b1bb481bSMatthew Knepley meshes, vertices are depth 0 and cells are depth 1. For fully interpolated meshes, depth 0 for vertices, 1 for edges, and so on 3906b1bb481bSMatthew Knepley until cells have depth equal to the dimension of the mesh. The depth label can be accessed through DMPlexGetDepthLabel() or DMPlexGetDepthStratum(), or 3907c58f1c22SToby Isaac manually via DMGetLabel(). The height is defined implicitly by height = maxDimension - depth, and can be accessed 3908150b719bSJed Brown via DMPlexGetHeightStratum(). For example, cells have height 0 and faces have height 1. 3909552f7358SJed Brown 3910b1bb481bSMatthew Knepley The depth of a point is calculated by executing a breadth-first search (BFS) on the DAG. This could produce surprising results 3911b1bb481bSMatthew Knepley if run on a partially interpolated mesh, meaning one that had some edges and faces, but not others. For example, suppose that 3912b1bb481bSMatthew Knepley we had a mesh consisting of one triangle (c0) and three vertices (v0, v1, v2), and only one edge is on the boundary so we choose 3913b1bb481bSMatthew Knepley to interpolate only that one (e0), so that 3914b1bb481bSMatthew Knepley $ cone(c0) = {e0, v2} 3915b1bb481bSMatthew Knepley $ cone(e0) = {v0, v1} 3916b1bb481bSMatthew Knepley If DMPlexStratify() is run on this mesh, it will give depths 3917b1bb481bSMatthew Knepley $ depth 0 = {v0, v1, v2} 3918b1bb481bSMatthew Knepley $ depth 1 = {e0, c0} 3919b1bb481bSMatthew Knepley where the triangle has been given depth 1, instead of 2, because it is reachable from vertex v2. 3920b1bb481bSMatthew Knepley 3921150b719bSJed Brown DMPlexStratify() should be called after all calls to DMPlexSymmetrize() 3922552f7358SJed Brown 3923552f7358SJed Brown Level: beginner 3924552f7358SJed Brown 3925db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSymmetrize()`, `DMPlexComputeCellTypes()` 3926552f7358SJed Brown @*/ 3927552f7358SJed Brown PetscErrorCode DMPlexStratify(DM dm) 3928552f7358SJed Brown { 3929df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 3930aa50250dSMatthew G. Knepley DMLabel label; 3931552f7358SJed Brown PetscInt pStart, pEnd, p; 3932552f7358SJed Brown PetscInt numRoots = 0, numLeaves = 0; 3933552f7358SJed Brown 3934552f7358SJed Brown PetscFunctionBegin; 3935552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Stratify,dm,0,0,0)); 3937277ea44aSLisandro Dalcin 3938277ea44aSLisandro Dalcin /* Create depth label */ 39399566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 39409566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, "depth")); 39419566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 3942277ea44aSLisandro Dalcin 3943277ea44aSLisandro Dalcin { 3944552f7358SJed Brown /* Initialize roots and count leaves */ 3945277ea44aSLisandro Dalcin PetscInt sMin = PETSC_MAX_INT; 3946277ea44aSLisandro Dalcin PetscInt sMax = PETSC_MIN_INT; 3947552f7358SJed Brown PetscInt coneSize, supportSize; 3948552f7358SJed Brown 3949277ea44aSLisandro Dalcin for (p = pStart; p < pEnd; ++p) { 39509566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 39519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 3952552f7358SJed Brown if (!coneSize && supportSize) { 3953277ea44aSLisandro Dalcin sMin = PetscMin(p, sMin); 3954277ea44aSLisandro Dalcin sMax = PetscMax(p, sMax); 3955552f7358SJed Brown ++numRoots; 3956552f7358SJed Brown } else if (!supportSize && coneSize) { 3957552f7358SJed Brown ++numLeaves; 3958552f7358SJed Brown } else if (!supportSize && !coneSize) { 3959552f7358SJed Brown /* Isolated points */ 3960277ea44aSLisandro Dalcin sMin = PetscMin(p, sMin); 3961277ea44aSLisandro Dalcin sMax = PetscMax(p, sMax); 3962552f7358SJed Brown } 3963552f7358SJed Brown } 39649566063dSJacob Faibussowitsch PetscCall(DMPlexCreateDepthStratum(dm, label, 0, sMin, sMax+1)); 3965277ea44aSLisandro Dalcin } 3966277ea44aSLisandro Dalcin 3967552f7358SJed Brown if (numRoots + numLeaves == (pEnd - pStart)) { 3968277ea44aSLisandro Dalcin PetscInt sMin = PETSC_MAX_INT; 3969277ea44aSLisandro Dalcin PetscInt sMax = PETSC_MIN_INT; 3970552f7358SJed Brown PetscInt coneSize, supportSize; 3971552f7358SJed Brown 3972277ea44aSLisandro Dalcin for (p = pStart; p < pEnd; ++p) { 39739566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 39749566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 3975552f7358SJed Brown if (!supportSize && coneSize) { 3976277ea44aSLisandro Dalcin sMin = PetscMin(p, sMin); 3977277ea44aSLisandro Dalcin sMax = PetscMax(p, sMax); 3978552f7358SJed Brown } 3979552f7358SJed Brown } 39809566063dSJacob Faibussowitsch PetscCall(DMPlexCreateDepthStratum(dm, label, 1, sMin, sMax+1)); 3981552f7358SJed Brown } else { 3982277ea44aSLisandro Dalcin PetscInt level = 0; 3983277ea44aSLisandro Dalcin PetscInt qStart, qEnd, q; 3984552f7358SJed Brown 39859566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(label, level, &qStart, &qEnd)); 3986277ea44aSLisandro Dalcin while (qEnd > qStart) { 3987277ea44aSLisandro Dalcin PetscInt sMin = PETSC_MAX_INT; 3988277ea44aSLisandro Dalcin PetscInt sMax = PETSC_MIN_INT; 398974ef644bSMatthew G. Knepley 3990277ea44aSLisandro Dalcin for (q = qStart; q < qEnd; ++q) { 399174ef644bSMatthew G. Knepley const PetscInt *support; 399274ef644bSMatthew G. Knepley PetscInt supportSize, s; 399374ef644bSMatthew G. Knepley 39949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, q, &supportSize)); 39959566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, q, &support)); 399674ef644bSMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3997277ea44aSLisandro Dalcin sMin = PetscMin(support[s], sMin); 3998277ea44aSLisandro Dalcin sMax = PetscMax(support[s], sMax); 3999552f7358SJed Brown } 4000552f7358SJed Brown } 40019566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &level)); 40029566063dSJacob Faibussowitsch PetscCall(DMPlexCreateDepthStratum(dm, label, level, sMin, sMax+1)); 40039566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(label, level, &qStart, &qEnd)); 400474ef644bSMatthew G. Knepley } 400574ef644bSMatthew G. Knepley } 4006bf4602e4SToby Isaac { /* just in case there is an empty process */ 4007bf4602e4SToby Isaac PetscInt numValues, maxValues = 0, v; 4008bf4602e4SToby Isaac 40099566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 40109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&numValues,&maxValues,1,MPIU_INT,MPI_MAX,PetscObjectComm((PetscObject)dm))); 4011bf4602e4SToby Isaac for (v = numValues; v < maxValues; v++) { 40129566063dSJacob Faibussowitsch PetscCall(DMLabelAddStratum(label, v)); 4013bf4602e4SToby Isaac } 4014bf4602e4SToby Isaac } 40159566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) label, &mesh->depthState)); 40169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Stratify,dm,0,0,0)); 4017552f7358SJed Brown PetscFunctionReturn(0); 4018552f7358SJed Brown } 4019552f7358SJed Brown 4020412e9a14SMatthew G. Knepley PetscErrorCode DMPlexComputeCellType_Internal(DM dm, PetscInt p, PetscInt pdepth, DMPolytopeType *pt) 4021ba2698f1SMatthew G. Knepley { 4022412e9a14SMatthew G. Knepley DMPolytopeType ct = DM_POLYTOPE_UNKNOWN; 4023412e9a14SMatthew G. Knepley PetscInt dim, depth, pheight, coneSize; 4024ba2698f1SMatthew G. Knepley 4025412e9a14SMatthew G. Knepley PetscFunctionBeginHot; 40269566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 40279566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 40289566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 4029ba2698f1SMatthew G. Knepley pheight = depth - pdepth; 4030ba2698f1SMatthew G. Knepley if (depth <= 1) { 4031ba2698f1SMatthew G. Knepley switch (pdepth) { 4032ba2698f1SMatthew G. Knepley case 0: ct = DM_POLYTOPE_POINT;break; 4033ba2698f1SMatthew G. Knepley case 1: 4034ba2698f1SMatthew G. Knepley switch (coneSize) { 4035ba2698f1SMatthew G. Knepley case 2: ct = DM_POLYTOPE_SEGMENT;break; 4036ba2698f1SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TRIANGLE;break; 4037ba2698f1SMatthew G. Knepley case 4: 4038ba2698f1SMatthew G. Knepley switch (dim) { 4039ba2698f1SMatthew G. Knepley case 2: ct = DM_POLYTOPE_QUADRILATERAL;break; 4040ba2698f1SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TETRAHEDRON;break; 4041ba2698f1SMatthew G. Knepley default: break; 4042ba2698f1SMatthew G. Knepley } 4043ba2698f1SMatthew G. Knepley break; 4044da9060c4SMatthew G. Knepley case 5: ct = DM_POLYTOPE_PYRAMID;break; 4045ba2698f1SMatthew G. Knepley case 6: ct = DM_POLYTOPE_TRI_PRISM_TENSOR;break; 4046ba2698f1SMatthew G. Knepley case 8: ct = DM_POLYTOPE_HEXAHEDRON;break; 4047ba2698f1SMatthew G. Knepley default: break; 4048ba2698f1SMatthew G. Knepley } 4049ba2698f1SMatthew G. Knepley } 4050ba2698f1SMatthew G. Knepley } else { 4051ba2698f1SMatthew G. Knepley if (pdepth == 0) { 4052ba2698f1SMatthew G. Knepley ct = DM_POLYTOPE_POINT; 4053ba2698f1SMatthew G. Knepley } else if (pheight == 0) { 4054ba2698f1SMatthew G. Knepley switch (dim) { 4055ba2698f1SMatthew G. Knepley case 1: 4056ba2698f1SMatthew G. Knepley switch (coneSize) { 4057ba2698f1SMatthew G. Knepley case 2: ct = DM_POLYTOPE_SEGMENT;break; 4058ba2698f1SMatthew G. Knepley default: break; 4059ba2698f1SMatthew G. Knepley } 4060ba2698f1SMatthew G. Knepley break; 4061ba2698f1SMatthew G. Knepley case 2: 4062ba2698f1SMatthew G. Knepley switch (coneSize) { 4063ba2698f1SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TRIANGLE;break; 4064ba2698f1SMatthew G. Knepley case 4: ct = DM_POLYTOPE_QUADRILATERAL;break; 4065ba2698f1SMatthew G. Knepley default: break; 4066ba2698f1SMatthew G. Knepley } 4067ba2698f1SMatthew G. Knepley break; 4068ba2698f1SMatthew G. Knepley case 3: 4069ba2698f1SMatthew G. Knepley switch (coneSize) { 4070ba2698f1SMatthew G. Knepley case 4: ct = DM_POLYTOPE_TETRAHEDRON;break; 4071da9060c4SMatthew G. Knepley case 5: 4072da9060c4SMatthew G. Knepley { 4073da9060c4SMatthew G. Knepley const PetscInt *cone; 4074da9060c4SMatthew G. Knepley PetscInt faceConeSize; 4075da9060c4SMatthew G. Knepley 40769566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 40779566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &faceConeSize)); 4078da9060c4SMatthew G. Knepley switch (faceConeSize) { 4079da9060c4SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TRI_PRISM_TENSOR;break; 4080da9060c4SMatthew G. Knepley case 4: ct = DM_POLYTOPE_PYRAMID;break; 4081da9060c4SMatthew G. Knepley } 4082da9060c4SMatthew G. Knepley } 4083da9060c4SMatthew G. Knepley break; 4084ba2698f1SMatthew G. Knepley case 6: ct = DM_POLYTOPE_HEXAHEDRON;break; 4085ba2698f1SMatthew G. Knepley default: break; 4086ba2698f1SMatthew G. Knepley } 4087ba2698f1SMatthew G. Knepley break; 4088ba2698f1SMatthew G. Knepley default: break; 4089ba2698f1SMatthew G. Knepley } 4090ba2698f1SMatthew G. Knepley } else if (pheight > 0) { 4091ba2698f1SMatthew G. Knepley switch (coneSize) { 4092ba2698f1SMatthew G. Knepley case 2: ct = DM_POLYTOPE_SEGMENT;break; 4093ba2698f1SMatthew G. Knepley case 3: ct = DM_POLYTOPE_TRIANGLE;break; 4094ba2698f1SMatthew G. Knepley case 4: ct = DM_POLYTOPE_QUADRILATERAL;break; 4095ba2698f1SMatthew G. Knepley default: break; 4096ba2698f1SMatthew G. Knepley } 4097ba2698f1SMatthew G. Knepley } 4098ba2698f1SMatthew G. Knepley } 4099412e9a14SMatthew G. Knepley *pt = ct; 4100412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 4101ba2698f1SMatthew G. Knepley } 4102412e9a14SMatthew G. Knepley 4103412e9a14SMatthew G. Knepley /*@ 4104412e9a14SMatthew G. Knepley DMPlexComputeCellTypes - Infer the polytope type of every cell using its dimension and cone size. 4105412e9a14SMatthew G. Knepley 4106412e9a14SMatthew G. Knepley Collective on dm 4107412e9a14SMatthew G. Knepley 4108412e9a14SMatthew G. Knepley Input Parameter: 4109412e9a14SMatthew G. Knepley . mesh - The DMPlex 4110412e9a14SMatthew G. Knepley 4111412e9a14SMatthew G. Knepley DMPlexComputeCellTypes() should be called after all calls to DMPlexSymmetrize() and DMPlexStratify() 4112412e9a14SMatthew G. Knepley 4113412e9a14SMatthew G. Knepley Level: developer 4114412e9a14SMatthew G. Knepley 4115412e9a14SMatthew G. Knepley Note: This function is normally called automatically by Plex when a cell type is requested. It creates an 4116412e9a14SMatthew G. Knepley internal DMLabel named "celltype" which can be directly accessed using DMGetLabel(). A user may disable 4117412e9a14SMatthew G. Knepley automatic creation by creating the label manually, using DMCreateLabel(dm, "celltype"). 4118412e9a14SMatthew G. Knepley 4119db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMPlexSymmetrize()`, `DMPlexStratify()`, `DMGetLabel()`, `DMCreateLabel()` 4120412e9a14SMatthew G. Knepley @*/ 4121412e9a14SMatthew G. Knepley PetscErrorCode DMPlexComputeCellTypes(DM dm) 4122412e9a14SMatthew G. Knepley { 4123412e9a14SMatthew G. Knepley DM_Plex *mesh; 4124412e9a14SMatthew G. Knepley DMLabel ctLabel; 4125412e9a14SMatthew G. Knepley PetscInt pStart, pEnd, p; 4126412e9a14SMatthew G. Knepley 4127412e9a14SMatthew G. Knepley PetscFunctionBegin; 4128412e9a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4129412e9a14SMatthew G. Knepley mesh = (DM_Plex *) dm->data; 41309566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, "celltype")); 41319566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 41329566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4133412e9a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4134327c2912SStefano Zampini DMPolytopeType ct = DM_POLYTOPE_UNKNOWN; 4135412e9a14SMatthew G. Knepley PetscInt pdepth; 4136412e9a14SMatthew G. Knepley 41379566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, p, &pdepth)); 41389566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellType_Internal(dm, p, pdepth, &ct)); 413963a3b9bcSJacob Faibussowitsch PetscCheck(ct != DM_POLYTOPE_UNKNOWN,PETSC_COMM_SELF, PETSC_ERR_SUP, "Point %" PetscInt_FMT " is screwed up", p); 41409566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ctLabel, p, ct)); 4141412e9a14SMatthew G. Knepley } 41429566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) ctLabel, &mesh->celltypeState)); 41439566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject) ctLabel, NULL, "-dm_plex_celltypes_view")); 4144ba2698f1SMatthew G. Knepley PetscFunctionReturn(0); 4145ba2698f1SMatthew G. Knepley } 4146ba2698f1SMatthew G. Knepley 4147552f7358SJed Brown /*@C 4148552f7358SJed Brown DMPlexGetJoin - Get an array for the join of the set of points 4149552f7358SJed Brown 4150552f7358SJed Brown Not Collective 4151552f7358SJed Brown 4152552f7358SJed Brown Input Parameters: 4153552f7358SJed Brown + dm - The DMPlex object 4154552f7358SJed Brown . numPoints - The number of input points for the join 4155552f7358SJed Brown - points - The input points 4156552f7358SJed Brown 4157552f7358SJed Brown Output Parameters: 4158552f7358SJed Brown + numCoveredPoints - The number of points in the join 4159552f7358SJed Brown - coveredPoints - The points in the join 4160552f7358SJed Brown 4161552f7358SJed Brown Level: intermediate 4162552f7358SJed Brown 4163552f7358SJed Brown Note: Currently, this is restricted to a single level join 4164552f7358SJed Brown 41653813dfbdSMatthew G Knepley Fortran Notes: 41663813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 41673813dfbdSMatthew G Knepley include petsc.h90 in your code. 41683813dfbdSMatthew G Knepley 41693813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 41703813dfbdSMatthew G Knepley 4171db781477SPatrick Sanan .seealso: `DMPlexRestoreJoin()`, `DMPlexGetMeet()` 4172552f7358SJed Brown @*/ 4173552f7358SJed Brown PetscErrorCode DMPlexGetJoin(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4174552f7358SJed Brown { 4175552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 4176552f7358SJed Brown PetscInt *join[2]; 4177552f7358SJed Brown PetscInt joinSize, i = 0; 4178552f7358SJed Brown PetscInt dof, off, p, c, m; 41796302a7fbSVaclav Hapla PetscInt maxSupportSize; 4180552f7358SJed Brown 4181552f7358SJed Brown PetscFunctionBegin; 4182552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 418348bb261cSVaclav Hapla PetscValidIntPointer(points, 3); 418448bb261cSVaclav Hapla PetscValidIntPointer(numCoveredPoints, 4); 418548bb261cSVaclav Hapla PetscValidPointer(coveredPoints, 5); 41866302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->supportSection, &maxSupportSize)); 41876302a7fbSVaclav Hapla PetscCall(DMGetWorkArray(dm, maxSupportSize, MPIU_INT, &join[0])); 41886302a7fbSVaclav Hapla PetscCall(DMGetWorkArray(dm, maxSupportSize, MPIU_INT, &join[1])); 4189552f7358SJed Brown /* Copy in support of first point */ 41909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, points[0], &dof)); 41919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, points[0], &off)); 4192552f7358SJed Brown for (joinSize = 0; joinSize < dof; ++joinSize) { 4193552f7358SJed Brown join[i][joinSize] = mesh->supports[off+joinSize]; 4194552f7358SJed Brown } 4195552f7358SJed Brown /* Check each successive support */ 4196552f7358SJed Brown for (p = 1; p < numPoints; ++p) { 4197552f7358SJed Brown PetscInt newJoinSize = 0; 4198552f7358SJed Brown 41999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->supportSection, points[p], &dof)); 42009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->supportSection, points[p], &off)); 4201552f7358SJed Brown for (c = 0; c < dof; ++c) { 4202552f7358SJed Brown const PetscInt point = mesh->supports[off+c]; 4203552f7358SJed Brown 4204552f7358SJed Brown for (m = 0; m < joinSize; ++m) { 4205552f7358SJed Brown if (point == join[i][m]) { 4206552f7358SJed Brown join[1-i][newJoinSize++] = point; 4207552f7358SJed Brown break; 4208552f7358SJed Brown } 4209552f7358SJed Brown } 4210552f7358SJed Brown } 4211552f7358SJed Brown joinSize = newJoinSize; 4212552f7358SJed Brown i = 1-i; 4213552f7358SJed Brown } 4214552f7358SJed Brown *numCoveredPoints = joinSize; 4215552f7358SJed Brown *coveredPoints = join[i]; 42166302a7fbSVaclav Hapla PetscCall(DMRestoreWorkArray(dm, maxSupportSize, MPIU_INT, &join[1-i])); 4217552f7358SJed Brown PetscFunctionReturn(0); 4218552f7358SJed Brown } 4219552f7358SJed Brown 4220552f7358SJed Brown /*@C 4221552f7358SJed Brown DMPlexRestoreJoin - Restore an array for the join of the set of points 4222552f7358SJed Brown 4223552f7358SJed Brown Not Collective 4224552f7358SJed Brown 4225552f7358SJed Brown Input Parameters: 4226552f7358SJed Brown + dm - The DMPlex object 4227552f7358SJed Brown . numPoints - The number of input points for the join 4228552f7358SJed Brown - points - The input points 4229552f7358SJed Brown 4230552f7358SJed Brown Output Parameters: 4231552f7358SJed Brown + numCoveredPoints - The number of points in the join 4232552f7358SJed Brown - coveredPoints - The points in the join 4233552f7358SJed Brown 42343813dfbdSMatthew G Knepley Fortran Notes: 42353813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 42363813dfbdSMatthew G Knepley include petsc.h90 in your code. 42373813dfbdSMatthew G Knepley 42383813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 42393813dfbdSMatthew G Knepley 4240552f7358SJed Brown Level: intermediate 4241552f7358SJed Brown 4242db781477SPatrick Sanan .seealso: `DMPlexGetJoin()`, `DMPlexGetFullJoin()`, `DMPlexGetMeet()` 4243552f7358SJed Brown @*/ 4244552f7358SJed Brown PetscErrorCode DMPlexRestoreJoin(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4245552f7358SJed Brown { 4246552f7358SJed Brown PetscFunctionBegin; 4247552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4248d7902bd2SMatthew G. Knepley if (points) PetscValidIntPointer(points,3); 4249d7902bd2SMatthew G. Knepley if (numCoveredPoints) PetscValidIntPointer(numCoveredPoints,4); 4250d7902bd2SMatthew G. Knepley PetscValidPointer(coveredPoints, 5); 42519566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_INT, (void*) coveredPoints)); 4252d7902bd2SMatthew G. Knepley if (numCoveredPoints) *numCoveredPoints = 0; 4253552f7358SJed Brown PetscFunctionReturn(0); 4254552f7358SJed Brown } 4255552f7358SJed Brown 4256552f7358SJed Brown /*@C 4257552f7358SJed Brown DMPlexGetFullJoin - Get an array for the join of the set of points 4258552f7358SJed Brown 4259552f7358SJed Brown Not Collective 4260552f7358SJed Brown 4261552f7358SJed Brown Input Parameters: 4262552f7358SJed Brown + dm - The DMPlex object 4263552f7358SJed Brown . numPoints - The number of input points for the join 4264552f7358SJed Brown - points - The input points 4265552f7358SJed Brown 4266552f7358SJed Brown Output Parameters: 4267552f7358SJed Brown + numCoveredPoints - The number of points in the join 4268552f7358SJed Brown - coveredPoints - The points in the join 4269552f7358SJed Brown 42703813dfbdSMatthew G Knepley Fortran Notes: 42713813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 42723813dfbdSMatthew G Knepley include petsc.h90 in your code. 42733813dfbdSMatthew G Knepley 42743813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 42753813dfbdSMatthew G Knepley 4276552f7358SJed Brown Level: intermediate 4277552f7358SJed Brown 4278db781477SPatrick Sanan .seealso: `DMPlexGetJoin()`, `DMPlexRestoreJoin()`, `DMPlexGetMeet()` 4279552f7358SJed Brown @*/ 4280552f7358SJed Brown PetscErrorCode DMPlexGetFullJoin(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4281552f7358SJed Brown { 4282552f7358SJed Brown PetscInt *offsets, **closures; 4283552f7358SJed Brown PetscInt *join[2]; 4284552f7358SJed Brown PetscInt depth = 0, maxSize, joinSize = 0, i = 0; 428524c766afSToby Isaac PetscInt p, d, c, m, ms; 4286552f7358SJed Brown 4287552f7358SJed Brown PetscFunctionBegin; 4288552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 428948bb261cSVaclav Hapla PetscValidIntPointer(points, 3); 429048bb261cSVaclav Hapla PetscValidIntPointer(numCoveredPoints, 4); 429148bb261cSVaclav Hapla PetscValidPointer(coveredPoints, 5); 4292552f7358SJed Brown 42939566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 42949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numPoints, &closures)); 42959566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numPoints*(depth+2), MPIU_INT, &offsets)); 42966302a7fbSVaclav Hapla PetscCall(DMPlexGetMaxSizes(dm, NULL, &ms)); 429724c766afSToby Isaac maxSize = (ms > 1) ? ((PetscPowInt(ms,depth+1)-1)/(ms-1)) : depth + 1; 42989566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, maxSize, MPIU_INT, &join[0])); 42999566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, maxSize, MPIU_INT, &join[1])); 4300552f7358SJed Brown 4301552f7358SJed Brown for (p = 0; p < numPoints; ++p) { 4302552f7358SJed Brown PetscInt closureSize; 4303552f7358SJed Brown 43049566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closures[p])); 43050d644c17SKarl Rupp 4306552f7358SJed Brown offsets[p*(depth+2)+0] = 0; 4307552f7358SJed Brown for (d = 0; d < depth+1; ++d) { 4308552f7358SJed Brown PetscInt pStart, pEnd, i; 4309552f7358SJed Brown 43109566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 4311552f7358SJed Brown for (i = offsets[p*(depth+2)+d]; i < closureSize; ++i) { 4312552f7358SJed Brown if ((pStart > closures[p][i*2]) || (pEnd <= closures[p][i*2])) { 4313552f7358SJed Brown offsets[p*(depth+2)+d+1] = i; 4314552f7358SJed Brown break; 4315552f7358SJed Brown } 4316552f7358SJed Brown } 4317552f7358SJed Brown if (i == closureSize) offsets[p*(depth+2)+d+1] = i; 4318552f7358SJed Brown } 431963a3b9bcSJacob Faibussowitsch PetscCheck(offsets[p*(depth+2)+depth+1] == closureSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Total size of closure %" PetscInt_FMT " should be %" PetscInt_FMT, offsets[p*(depth+2)+depth+1], closureSize); 4320552f7358SJed Brown } 4321552f7358SJed Brown for (d = 0; d < depth+1; ++d) { 4322552f7358SJed Brown PetscInt dof; 4323552f7358SJed Brown 4324552f7358SJed Brown /* Copy in support of first point */ 4325552f7358SJed Brown dof = offsets[d+1] - offsets[d]; 4326552f7358SJed Brown for (joinSize = 0; joinSize < dof; ++joinSize) { 4327552f7358SJed Brown join[i][joinSize] = closures[0][(offsets[d]+joinSize)*2]; 4328552f7358SJed Brown } 4329552f7358SJed Brown /* Check each successive cone */ 4330552f7358SJed Brown for (p = 1; p < numPoints && joinSize; ++p) { 4331552f7358SJed Brown PetscInt newJoinSize = 0; 4332552f7358SJed Brown 4333552f7358SJed Brown dof = offsets[p*(depth+2)+d+1] - offsets[p*(depth+2)+d]; 4334552f7358SJed Brown for (c = 0; c < dof; ++c) { 4335552f7358SJed Brown const PetscInt point = closures[p][(offsets[p*(depth+2)+d]+c)*2]; 4336552f7358SJed Brown 4337552f7358SJed Brown for (m = 0; m < joinSize; ++m) { 4338552f7358SJed Brown if (point == join[i][m]) { 4339552f7358SJed Brown join[1-i][newJoinSize++] = point; 4340552f7358SJed Brown break; 4341552f7358SJed Brown } 4342552f7358SJed Brown } 4343552f7358SJed Brown } 4344552f7358SJed Brown joinSize = newJoinSize; 4345552f7358SJed Brown i = 1-i; 4346552f7358SJed Brown } 4347552f7358SJed Brown if (joinSize) break; 4348552f7358SJed Brown } 4349552f7358SJed Brown *numCoveredPoints = joinSize; 4350552f7358SJed Brown *coveredPoints = join[i]; 4351552f7358SJed Brown for (p = 0; p < numPoints; ++p) { 43529566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, NULL, &closures[p])); 4353552f7358SJed Brown } 43549566063dSJacob Faibussowitsch PetscCall(PetscFree(closures)); 43559566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numPoints*(depth+2), MPIU_INT, &offsets)); 43566302a7fbSVaclav Hapla PetscCall(DMRestoreWorkArray(dm, ms, MPIU_INT, &join[1-i])); 4357552f7358SJed Brown PetscFunctionReturn(0); 4358552f7358SJed Brown } 4359552f7358SJed Brown 4360552f7358SJed Brown /*@C 4361552f7358SJed Brown DMPlexGetMeet - Get an array for the meet of the set of points 4362552f7358SJed Brown 4363552f7358SJed Brown Not Collective 4364552f7358SJed Brown 4365552f7358SJed Brown Input Parameters: 4366552f7358SJed Brown + dm - The DMPlex object 4367552f7358SJed Brown . numPoints - The number of input points for the meet 4368552f7358SJed Brown - points - The input points 4369552f7358SJed Brown 4370552f7358SJed Brown Output Parameters: 4371552f7358SJed Brown + numCoveredPoints - The number of points in the meet 4372552f7358SJed Brown - coveredPoints - The points in the meet 4373552f7358SJed Brown 4374552f7358SJed Brown Level: intermediate 4375552f7358SJed Brown 4376552f7358SJed Brown Note: Currently, this is restricted to a single level meet 4377552f7358SJed Brown 43783813dfbdSMatthew G Knepley Fortran Notes: 43793813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 43803813dfbdSMatthew G Knepley include petsc.h90 in your code. 43813813dfbdSMatthew G Knepley 43823813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 43833813dfbdSMatthew G Knepley 4384db781477SPatrick Sanan .seealso: `DMPlexRestoreMeet()`, `DMPlexGetJoin()` 4385552f7358SJed Brown @*/ 4386552f7358SJed Brown PetscErrorCode DMPlexGetMeet(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveringPoints, const PetscInt **coveringPoints) 4387552f7358SJed Brown { 4388552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 4389552f7358SJed Brown PetscInt *meet[2]; 4390552f7358SJed Brown PetscInt meetSize, i = 0; 4391552f7358SJed Brown PetscInt dof, off, p, c, m; 43926302a7fbSVaclav Hapla PetscInt maxConeSize; 4393552f7358SJed Brown 4394552f7358SJed Brown PetscFunctionBegin; 4395552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4396dadcf809SJacob Faibussowitsch PetscValidIntPointer(points, 3); 4397dadcf809SJacob Faibussowitsch PetscValidIntPointer(numCoveringPoints, 4); 4398064a246eSJacob Faibussowitsch PetscValidPointer(coveringPoints, 5); 43996302a7fbSVaclav Hapla PetscCall(PetscSectionGetMaxDof(mesh->coneSection, &maxConeSize)); 44006302a7fbSVaclav Hapla PetscCall(DMGetWorkArray(dm, maxConeSize, MPIU_INT, &meet[0])); 44016302a7fbSVaclav Hapla PetscCall(DMGetWorkArray(dm, maxConeSize, MPIU_INT, &meet[1])); 4402552f7358SJed Brown /* Copy in cone of first point */ 44039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, points[0], &dof)); 44049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, points[0], &off)); 4405552f7358SJed Brown for (meetSize = 0; meetSize < dof; ++meetSize) { 4406552f7358SJed Brown meet[i][meetSize] = mesh->cones[off+meetSize]; 4407552f7358SJed Brown } 4408552f7358SJed Brown /* Check each successive cone */ 4409552f7358SJed Brown for (p = 1; p < numPoints; ++p) { 4410552f7358SJed Brown PetscInt newMeetSize = 0; 4411552f7358SJed Brown 44129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(mesh->coneSection, points[p], &dof)); 44139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(mesh->coneSection, points[p], &off)); 4414552f7358SJed Brown for (c = 0; c < dof; ++c) { 4415552f7358SJed Brown const PetscInt point = mesh->cones[off+c]; 4416552f7358SJed Brown 4417552f7358SJed Brown for (m = 0; m < meetSize; ++m) { 4418552f7358SJed Brown if (point == meet[i][m]) { 4419552f7358SJed Brown meet[1-i][newMeetSize++] = point; 4420552f7358SJed Brown break; 4421552f7358SJed Brown } 4422552f7358SJed Brown } 4423552f7358SJed Brown } 4424552f7358SJed Brown meetSize = newMeetSize; 4425552f7358SJed Brown i = 1-i; 4426552f7358SJed Brown } 4427552f7358SJed Brown *numCoveringPoints = meetSize; 4428552f7358SJed Brown *coveringPoints = meet[i]; 44296302a7fbSVaclav Hapla PetscCall(DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &meet[1-i])); 4430552f7358SJed Brown PetscFunctionReturn(0); 4431552f7358SJed Brown } 4432552f7358SJed Brown 4433552f7358SJed Brown /*@C 4434552f7358SJed Brown DMPlexRestoreMeet - Restore an array for the meet of the set of points 4435552f7358SJed Brown 4436552f7358SJed Brown Not Collective 4437552f7358SJed Brown 4438552f7358SJed Brown Input Parameters: 4439552f7358SJed Brown + dm - The DMPlex object 4440552f7358SJed Brown . numPoints - The number of input points for the meet 4441552f7358SJed Brown - points - The input points 4442552f7358SJed Brown 4443552f7358SJed Brown Output Parameters: 4444552f7358SJed Brown + numCoveredPoints - The number of points in the meet 4445552f7358SJed Brown - coveredPoints - The points in the meet 4446552f7358SJed Brown 4447552f7358SJed Brown Level: intermediate 4448552f7358SJed Brown 44493813dfbdSMatthew G Knepley Fortran Notes: 44503813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 44513813dfbdSMatthew G Knepley include petsc.h90 in your code. 44523813dfbdSMatthew G Knepley 44533813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 44543813dfbdSMatthew G Knepley 4455db781477SPatrick Sanan .seealso: `DMPlexGetMeet()`, `DMPlexGetFullMeet()`, `DMPlexGetJoin()` 4456552f7358SJed Brown @*/ 4457552f7358SJed Brown PetscErrorCode DMPlexRestoreMeet(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4458552f7358SJed Brown { 4459552f7358SJed Brown PetscFunctionBegin; 4460552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4461d7902bd2SMatthew G. Knepley if (points) PetscValidIntPointer(points,3); 4462d7902bd2SMatthew G. Knepley if (numCoveredPoints) PetscValidIntPointer(numCoveredPoints,4); 4463d7902bd2SMatthew G. Knepley PetscValidPointer(coveredPoints,5); 44649566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_INT, (void*) coveredPoints)); 4465d7902bd2SMatthew G. Knepley if (numCoveredPoints) *numCoveredPoints = 0; 4466552f7358SJed Brown PetscFunctionReturn(0); 4467552f7358SJed Brown } 4468552f7358SJed Brown 4469552f7358SJed Brown /*@C 4470552f7358SJed Brown DMPlexGetFullMeet - Get an array for the meet of the set of points 4471552f7358SJed Brown 4472552f7358SJed Brown Not Collective 4473552f7358SJed Brown 4474552f7358SJed Brown Input Parameters: 4475552f7358SJed Brown + dm - The DMPlex object 4476552f7358SJed Brown . numPoints - The number of input points for the meet 4477552f7358SJed Brown - points - The input points 4478552f7358SJed Brown 4479552f7358SJed Brown Output Parameters: 4480552f7358SJed Brown + numCoveredPoints - The number of points in the meet 4481552f7358SJed Brown - coveredPoints - The points in the meet 4482552f7358SJed Brown 4483552f7358SJed Brown Level: intermediate 4484552f7358SJed Brown 44853813dfbdSMatthew G Knepley Fortran Notes: 44863813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 44873813dfbdSMatthew G Knepley include petsc.h90 in your code. 44883813dfbdSMatthew G Knepley 44893813dfbdSMatthew G Knepley The numCoveredPoints argument is not present in the Fortran 90 binding since it is internal to the array. 44903813dfbdSMatthew G Knepley 4491db781477SPatrick Sanan .seealso: `DMPlexGetMeet()`, `DMPlexRestoreMeet()`, `DMPlexGetJoin()` 4492552f7358SJed Brown @*/ 4493552f7358SJed Brown PetscErrorCode DMPlexGetFullMeet(DM dm, PetscInt numPoints, const PetscInt points[], PetscInt *numCoveredPoints, const PetscInt **coveredPoints) 4494552f7358SJed Brown { 4495552f7358SJed Brown PetscInt *offsets, **closures; 4496552f7358SJed Brown PetscInt *meet[2]; 4497552f7358SJed Brown PetscInt height = 0, maxSize, meetSize = 0, i = 0; 449824c766afSToby Isaac PetscInt p, h, c, m, mc; 4499552f7358SJed Brown 4500552f7358SJed Brown PetscFunctionBegin; 4501552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4502dadcf809SJacob Faibussowitsch PetscValidIntPointer(points, 3); 4503dadcf809SJacob Faibussowitsch PetscValidIntPointer(numCoveredPoints, 4); 4504064a246eSJacob Faibussowitsch PetscValidPointer(coveredPoints, 5); 4505552f7358SJed Brown 45069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &height)); 45079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints, &closures)); 45089566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numPoints*(height+2), MPIU_INT, &offsets)); 45096302a7fbSVaclav Hapla PetscCall(DMPlexGetMaxSizes(dm, &mc, NULL)); 451024c766afSToby Isaac maxSize = (mc > 1) ? ((PetscPowInt(mc,height+1)-1)/(mc-1)) : height + 1; 45119566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, maxSize, MPIU_INT, &meet[0])); 45129566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, maxSize, MPIU_INT, &meet[1])); 4513552f7358SJed Brown 4514552f7358SJed Brown for (p = 0; p < numPoints; ++p) { 4515552f7358SJed Brown PetscInt closureSize; 4516552f7358SJed Brown 45179566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closures[p])); 45180d644c17SKarl Rupp 4519552f7358SJed Brown offsets[p*(height+2)+0] = 0; 4520552f7358SJed Brown for (h = 0; h < height+1; ++h) { 4521552f7358SJed Brown PetscInt pStart, pEnd, i; 4522552f7358SJed Brown 45239566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, h, &pStart, &pEnd)); 4524552f7358SJed Brown for (i = offsets[p*(height+2)+h]; i < closureSize; ++i) { 4525552f7358SJed Brown if ((pStart > closures[p][i*2]) || (pEnd <= closures[p][i*2])) { 4526552f7358SJed Brown offsets[p*(height+2)+h+1] = i; 4527552f7358SJed Brown break; 4528552f7358SJed Brown } 4529552f7358SJed Brown } 4530552f7358SJed Brown if (i == closureSize) offsets[p*(height+2)+h+1] = i; 4531552f7358SJed Brown } 453263a3b9bcSJacob Faibussowitsch PetscCheck(offsets[p*(height+2)+height+1] == closureSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Total size of closure %" PetscInt_FMT " should be %" PetscInt_FMT, offsets[p*(height+2)+height+1], closureSize); 4533552f7358SJed Brown } 4534552f7358SJed Brown for (h = 0; h < height+1; ++h) { 4535552f7358SJed Brown PetscInt dof; 4536552f7358SJed Brown 4537552f7358SJed Brown /* Copy in cone of first point */ 4538552f7358SJed Brown dof = offsets[h+1] - offsets[h]; 4539552f7358SJed Brown for (meetSize = 0; meetSize < dof; ++meetSize) { 4540552f7358SJed Brown meet[i][meetSize] = closures[0][(offsets[h]+meetSize)*2]; 4541552f7358SJed Brown } 4542552f7358SJed Brown /* Check each successive cone */ 4543552f7358SJed Brown for (p = 1; p < numPoints && meetSize; ++p) { 4544552f7358SJed Brown PetscInt newMeetSize = 0; 4545552f7358SJed Brown 4546552f7358SJed Brown dof = offsets[p*(height+2)+h+1] - offsets[p*(height+2)+h]; 4547552f7358SJed Brown for (c = 0; c < dof; ++c) { 4548552f7358SJed Brown const PetscInt point = closures[p][(offsets[p*(height+2)+h]+c)*2]; 4549552f7358SJed Brown 4550552f7358SJed Brown for (m = 0; m < meetSize; ++m) { 4551552f7358SJed Brown if (point == meet[i][m]) { 4552552f7358SJed Brown meet[1-i][newMeetSize++] = point; 4553552f7358SJed Brown break; 4554552f7358SJed Brown } 4555552f7358SJed Brown } 4556552f7358SJed Brown } 4557552f7358SJed Brown meetSize = newMeetSize; 4558552f7358SJed Brown i = 1-i; 4559552f7358SJed Brown } 4560552f7358SJed Brown if (meetSize) break; 4561552f7358SJed Brown } 4562552f7358SJed Brown *numCoveredPoints = meetSize; 4563552f7358SJed Brown *coveredPoints = meet[i]; 4564552f7358SJed Brown for (p = 0; p < numPoints; ++p) { 45659566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, NULL, &closures[p])); 4566552f7358SJed Brown } 45679566063dSJacob Faibussowitsch PetscCall(PetscFree(closures)); 45689566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numPoints*(height+2), MPIU_INT, &offsets)); 45696302a7fbSVaclav Hapla PetscCall(DMRestoreWorkArray(dm, mc, MPIU_INT, &meet[1-i])); 4570552f7358SJed Brown PetscFunctionReturn(0); 4571552f7358SJed Brown } 4572552f7358SJed Brown 45734e3744c5SMatthew G. Knepley /*@C 45744e3744c5SMatthew G. Knepley DMPlexEqual - Determine if two DMs have the same topology 45754e3744c5SMatthew G. Knepley 45764e3744c5SMatthew G. Knepley Not Collective 45774e3744c5SMatthew G. Knepley 45784e3744c5SMatthew G. Knepley Input Parameters: 45794e3744c5SMatthew G. Knepley + dmA - A DMPlex object 45804e3744c5SMatthew G. Knepley - dmB - A DMPlex object 45814e3744c5SMatthew G. Knepley 45824e3744c5SMatthew G. Knepley Output Parameters: 45834e3744c5SMatthew G. Knepley . equal - PETSC_TRUE if the topologies are identical 45844e3744c5SMatthew G. Knepley 45854e3744c5SMatthew G. Knepley Level: intermediate 45864e3744c5SMatthew G. Knepley 45874e3744c5SMatthew G. Knepley Notes: 45884e3744c5SMatthew G. Knepley We are not solving graph isomorphism, so we do not permutation. 45894e3744c5SMatthew G. Knepley 4590db781477SPatrick Sanan .seealso: `DMPlexGetCone()` 45914e3744c5SMatthew G. Knepley @*/ 45924e3744c5SMatthew G. Knepley PetscErrorCode DMPlexEqual(DM dmA, DM dmB, PetscBool *equal) 45934e3744c5SMatthew G. Knepley { 45944e3744c5SMatthew G. Knepley PetscInt depth, depthB, pStart, pEnd, pStartB, pEndB, p; 45954e3744c5SMatthew G. Knepley 45964e3744c5SMatthew G. Knepley PetscFunctionBegin; 45974e3744c5SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 45984e3744c5SMatthew G. Knepley PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 4599dadcf809SJacob Faibussowitsch PetscValidBoolPointer(equal, 3); 46004e3744c5SMatthew G. Knepley 46014e3744c5SMatthew G. Knepley *equal = PETSC_FALSE; 46029566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dmA, &depth)); 46039566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dmB, &depthB)); 46044e3744c5SMatthew G. Knepley if (depth != depthB) PetscFunctionReturn(0); 46059566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmA, &pStart, &pEnd)); 46069566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmB, &pStartB, &pEndB)); 46074e3744c5SMatthew G. Knepley if ((pStart != pStartB) || (pEnd != pEndB)) PetscFunctionReturn(0); 46084e3744c5SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 46094e3744c5SMatthew G. Knepley const PetscInt *cone, *coneB, *ornt, *orntB, *support, *supportB; 46104e3744c5SMatthew G. Knepley PetscInt coneSize, coneSizeB, c, supportSize, supportSizeB, s; 46114e3744c5SMatthew G. Knepley 46129566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dmA, p, &coneSize)); 46139566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dmA, p, &cone)); 46149566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dmA, p, &ornt)); 46159566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dmB, p, &coneSizeB)); 46169566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dmB, p, &coneB)); 46179566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dmB, p, &orntB)); 46184e3744c5SMatthew G. Knepley if (coneSize != coneSizeB) PetscFunctionReturn(0); 46194e3744c5SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 46204e3744c5SMatthew G. Knepley if (cone[c] != coneB[c]) PetscFunctionReturn(0); 46214e3744c5SMatthew G. Knepley if (ornt[c] != orntB[c]) PetscFunctionReturn(0); 46224e3744c5SMatthew G. Knepley } 46239566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmA, p, &supportSize)); 46249566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmA, p, &support)); 46259566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmB, p, &supportSizeB)); 46269566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmB, p, &supportB)); 46274e3744c5SMatthew G. Knepley if (supportSize != supportSizeB) PetscFunctionReturn(0); 46284e3744c5SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 46294e3744c5SMatthew G. Knepley if (support[s] != supportB[s]) PetscFunctionReturn(0); 46304e3744c5SMatthew G. Knepley } 46314e3744c5SMatthew G. Knepley } 46324e3744c5SMatthew G. Knepley *equal = PETSC_TRUE; 46334e3744c5SMatthew G. Knepley PetscFunctionReturn(0); 46344e3744c5SMatthew G. Knepley } 46354e3744c5SMatthew G. Knepley 46367cd05799SMatthew G. Knepley /*@C 46377cd05799SMatthew G. Knepley DMPlexGetNumFaceVertices - Returns the number of vertices on a face 46387cd05799SMatthew G. Knepley 46397cd05799SMatthew G. Knepley Not Collective 46407cd05799SMatthew G. Knepley 46417cd05799SMatthew G. Knepley Input Parameters: 46427cd05799SMatthew G. Knepley + dm - The DMPlex 46437cd05799SMatthew G. Knepley . cellDim - The cell dimension 46447cd05799SMatthew G. Knepley - numCorners - The number of vertices on a cell 46457cd05799SMatthew G. Knepley 46467cd05799SMatthew G. Knepley Output Parameters: 46477cd05799SMatthew G. Knepley . numFaceVertices - The number of vertices on a face 46487cd05799SMatthew G. Knepley 46497cd05799SMatthew G. Knepley Level: developer 46507cd05799SMatthew G. Knepley 46517cd05799SMatthew G. Knepley Notes: 46527cd05799SMatthew G. Knepley Of course this can only work for a restricted set of symmetric shapes 46537cd05799SMatthew G. Knepley 4654db781477SPatrick Sanan .seealso: `DMPlexGetCone()` 46557cd05799SMatthew G. Knepley @*/ 465618ad9376SMatthew G. Knepley PetscErrorCode DMPlexGetNumFaceVertices(DM dm, PetscInt cellDim, PetscInt numCorners, PetscInt *numFaceVertices) 4657a6dfd86eSKarl Rupp { 465882f516ccSBarry Smith MPI_Comm comm; 4659552f7358SJed Brown 4660552f7358SJed Brown PetscFunctionBegin; 46619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 4662dadcf809SJacob Faibussowitsch PetscValidIntPointer(numFaceVertices,4); 4663552f7358SJed Brown switch (cellDim) { 4664552f7358SJed Brown case 0: 4665552f7358SJed Brown *numFaceVertices = 0; 4666552f7358SJed Brown break; 4667552f7358SJed Brown case 1: 4668552f7358SJed Brown *numFaceVertices = 1; 4669552f7358SJed Brown break; 4670552f7358SJed Brown case 2: 4671552f7358SJed Brown switch (numCorners) { 467219436ca2SJed Brown case 3: /* triangle */ 467319436ca2SJed Brown *numFaceVertices = 2; /* Edge has 2 vertices */ 4674552f7358SJed Brown break; 467519436ca2SJed Brown case 4: /* quadrilateral */ 467619436ca2SJed Brown *numFaceVertices = 2; /* Edge has 2 vertices */ 4677552f7358SJed Brown break; 467819436ca2SJed Brown case 6: /* quadratic triangle, tri and quad cohesive Lagrange cells */ 467919436ca2SJed Brown *numFaceVertices = 3; /* Edge has 3 vertices */ 4680552f7358SJed Brown break; 468119436ca2SJed Brown case 9: /* quadratic quadrilateral, quadratic quad cohesive Lagrange cells */ 468219436ca2SJed Brown *numFaceVertices = 3; /* Edge has 3 vertices */ 4683552f7358SJed Brown break; 4684552f7358SJed Brown default: 468563a3b9bcSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid number of face corners %" PetscInt_FMT " for dimension %" PetscInt_FMT, numCorners, cellDim); 4686552f7358SJed Brown } 4687552f7358SJed Brown break; 4688552f7358SJed Brown case 3: 4689552f7358SJed Brown switch (numCorners) { 469019436ca2SJed Brown case 4: /* tetradehdron */ 469119436ca2SJed Brown *numFaceVertices = 3; /* Face has 3 vertices */ 4692552f7358SJed Brown break; 469319436ca2SJed Brown case 6: /* tet cohesive cells */ 469419436ca2SJed Brown *numFaceVertices = 4; /* Face has 4 vertices */ 4695552f7358SJed Brown break; 469619436ca2SJed Brown case 8: /* hexahedron */ 469719436ca2SJed Brown *numFaceVertices = 4; /* Face has 4 vertices */ 4698552f7358SJed Brown break; 469919436ca2SJed Brown case 9: /* tet cohesive Lagrange cells */ 470019436ca2SJed Brown *numFaceVertices = 6; /* Face has 6 vertices */ 4701552f7358SJed Brown break; 470219436ca2SJed Brown case 10: /* quadratic tetrahedron */ 470319436ca2SJed Brown *numFaceVertices = 6; /* Face has 6 vertices */ 4704552f7358SJed Brown break; 470519436ca2SJed Brown case 12: /* hex cohesive Lagrange cells */ 470619436ca2SJed Brown *numFaceVertices = 6; /* Face has 6 vertices */ 4707552f7358SJed Brown break; 470819436ca2SJed Brown case 18: /* quadratic tet cohesive Lagrange cells */ 470919436ca2SJed Brown *numFaceVertices = 6; /* Face has 6 vertices */ 4710552f7358SJed Brown break; 471119436ca2SJed Brown case 27: /* quadratic hexahedron, quadratic hex cohesive Lagrange cells */ 471219436ca2SJed Brown *numFaceVertices = 9; /* Face has 9 vertices */ 4713552f7358SJed Brown break; 4714552f7358SJed Brown default: 471563a3b9bcSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid number of face corners %" PetscInt_FMT " for dimension %" PetscInt_FMT, numCorners, cellDim); 4716552f7358SJed Brown } 4717552f7358SJed Brown break; 4718552f7358SJed Brown default: 471963a3b9bcSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "Invalid cell dimension %" PetscInt_FMT, cellDim); 4720552f7358SJed Brown } 4721552f7358SJed Brown PetscFunctionReturn(0); 4722552f7358SJed Brown } 4723552f7358SJed Brown 4724552f7358SJed Brown /*@ 4725aa50250dSMatthew G. Knepley DMPlexGetDepthLabel - Get the DMLabel recording the depth of each point 4726552f7358SJed Brown 4727552f7358SJed Brown Not Collective 4728552f7358SJed Brown 4729aa50250dSMatthew G. Knepley Input Parameter: 4730552f7358SJed Brown . dm - The DMPlex object 4731552f7358SJed Brown 4732aa50250dSMatthew G. Knepley Output Parameter: 4733aa50250dSMatthew G. Knepley . depthLabel - The DMLabel recording point depth 4734552f7358SJed Brown 4735552f7358SJed Brown Level: developer 4736552f7358SJed Brown 4737db781477SPatrick Sanan .seealso: `DMPlexGetDepth()`, `DMPlexGetHeightStratum()`, `DMPlexGetDepthStratum()`, `DMPlexGetPointDepth()`, 4738aa50250dSMatthew G. Knepley @*/ 4739aa50250dSMatthew G. Knepley PetscErrorCode DMPlexGetDepthLabel(DM dm, DMLabel *depthLabel) 4740aa50250dSMatthew G. Knepley { 4741aa50250dSMatthew G. Knepley PetscFunctionBegin; 4742aa50250dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4743aa50250dSMatthew G. Knepley PetscValidPointer(depthLabel, 2); 4744c58f1c22SToby Isaac *depthLabel = dm->depthLabel; 4745aa50250dSMatthew G. Knepley PetscFunctionReturn(0); 4746aa50250dSMatthew G. Knepley } 4747aa50250dSMatthew G. Knepley 4748aa50250dSMatthew G. Knepley /*@ 4749aa50250dSMatthew G. Knepley DMPlexGetDepth - Get the depth of the DAG representing this mesh 4750aa50250dSMatthew G. Knepley 4751aa50250dSMatthew G. Knepley Not Collective 4752aa50250dSMatthew G. Knepley 4753aa50250dSMatthew G. Knepley Input Parameter: 4754aa50250dSMatthew G. Knepley . dm - The DMPlex object 4755aa50250dSMatthew G. Knepley 4756aa50250dSMatthew G. Knepley Output Parameter: 4757aa50250dSMatthew G. Knepley . depth - The number of strata (breadth first levels) in the DAG 4758aa50250dSMatthew G. Knepley 4759aa50250dSMatthew G. Knepley Level: developer 4760552f7358SJed Brown 4761b1bb481bSMatthew Knepley Notes: 4762b1bb481bSMatthew Knepley This returns maximum of point depths over all points, i.e. maximum value of the label returned by DMPlexGetDepthLabel(). 4763dc287ab2SVaclav Hapla The point depth is described more in detail in DMPlexGetDepthStratum(). 4764dc287ab2SVaclav Hapla An empty mesh gives -1. 4765b1bb481bSMatthew Knepley 4766db781477SPatrick Sanan .seealso: `DMPlexGetDepthLabel()`, `DMPlexGetDepthStratum()`, `DMPlexGetPointDepth()`, `DMPlexSymmetrize()` 4767552f7358SJed Brown @*/ 4768552f7358SJed Brown PetscErrorCode DMPlexGetDepth(DM dm, PetscInt *depth) 4769552f7358SJed Brown { 4770aa50250dSMatthew G. Knepley DMLabel label; 4771aa50250dSMatthew G. Knepley PetscInt d = 0; 4772552f7358SJed Brown 4773552f7358SJed Brown PetscFunctionBegin; 4774552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4775dadcf809SJacob Faibussowitsch PetscValidIntPointer(depth, 2); 47769566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 47779566063dSJacob Faibussowitsch if (label) PetscCall(DMLabelGetNumValues(label, &d)); 4778552f7358SJed Brown *depth = d-1; 4779552f7358SJed Brown PetscFunctionReturn(0); 4780552f7358SJed Brown } 4781552f7358SJed Brown 4782552f7358SJed Brown /*@ 4783552f7358SJed Brown DMPlexGetDepthStratum - Get the bounds [start, end) for all points at a certain depth. 4784552f7358SJed Brown 4785552f7358SJed Brown Not Collective 4786552f7358SJed Brown 4787552f7358SJed Brown Input Parameters: 4788552f7358SJed Brown + dm - The DMPlex object 4789570fa34dSVaclav Hapla - depth - The requested depth 4790552f7358SJed Brown 4791552f7358SJed Brown Output Parameters: 4792552f7358SJed Brown + start - The first point at this depth 4793552f7358SJed Brown - end - One beyond the last point at this depth 4794552f7358SJed Brown 4795647867b2SJed Brown Notes: 4796647867b2SJed Brown Depth indexing is related to topological dimension. Depth stratum 0 contains the lowest topological dimension points, 4797647867b2SJed Brown often "vertices". If the mesh is "interpolated" (see DMPlexInterpolate()), then depth stratum 1 contains the next 4798647867b2SJed Brown higher dimension, e.g., "edges". 4799647867b2SJed Brown 4800552f7358SJed Brown Level: developer 4801552f7358SJed Brown 4802db781477SPatrick Sanan .seealso: `DMPlexGetHeightStratum()`, `DMPlexGetDepth()`, `DMPlexGetDepthLabel()`, `DMPlexGetPointDepth()`, `DMPlexSymmetrize()`, `DMPlexInterpolate()` 4803552f7358SJed Brown @*/ 4804570fa34dSVaclav Hapla PetscErrorCode DMPlexGetDepthStratum(DM dm, PetscInt depth, PetscInt *start, PetscInt *end) 48050adebc6cSBarry Smith { 4806aa50250dSMatthew G. Knepley DMLabel label; 480763d1a920SMatthew G. Knepley PetscInt pStart, pEnd; 4808552f7358SJed Brown 4809552f7358SJed Brown PetscFunctionBegin; 4810552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4811dadcf809SJacob Faibussowitsch if (start) {PetscValidIntPointer(start, 3); *start = 0;} 4812dadcf809SJacob Faibussowitsch if (end) {PetscValidIntPointer(end, 4); *end = 0;} 48139566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 48140d644c17SKarl Rupp if (pStart == pEnd) PetscFunctionReturn(0); 4815570fa34dSVaclav Hapla if (depth < 0) { 481663d1a920SMatthew G. Knepley if (start) *start = pStart; 481763d1a920SMatthew G. Knepley if (end) *end = pEnd; 481863d1a920SMatthew G. Knepley PetscFunctionReturn(0); 4819552f7358SJed Brown } 48209566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 482128b400f6SJacob Faibussowitsch PetscCheck(label,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "No label named depth was found"); 4822570fa34dSVaclav Hapla PetscCall(DMLabelGetStratumBounds(label, depth, start, end)); 4823552f7358SJed Brown PetscFunctionReturn(0); 4824552f7358SJed Brown } 4825552f7358SJed Brown 4826552f7358SJed Brown /*@ 4827552f7358SJed Brown DMPlexGetHeightStratum - Get the bounds [start, end) for all points at a certain height. 4828552f7358SJed Brown 4829552f7358SJed Brown Not Collective 4830552f7358SJed Brown 4831552f7358SJed Brown Input Parameters: 4832552f7358SJed Brown + dm - The DMPlex object 4833570fa34dSVaclav Hapla - height - The requested height 4834552f7358SJed Brown 4835552f7358SJed Brown Output Parameters: 4836552f7358SJed Brown + start - The first point at this height 4837552f7358SJed Brown - end - One beyond the last point at this height 4838552f7358SJed Brown 4839647867b2SJed Brown Notes: 4840647867b2SJed Brown Height indexing is related to topological codimension. Height stratum 0 contains the highest topological dimension 4841647867b2SJed Brown points, often called "cells" or "elements". If the mesh is "interpolated" (see DMPlexInterpolate()), then height 4842647867b2SJed Brown stratum 1 contains the boundary of these "cells", often called "faces" or "facets". 4843647867b2SJed Brown 4844552f7358SJed Brown Level: developer 4845552f7358SJed Brown 4846db781477SPatrick Sanan .seealso: `DMPlexGetDepthStratum()`, `DMPlexGetDepth()`, `DMPlexGetPointHeight()` 4847552f7358SJed Brown @*/ 4848570fa34dSVaclav Hapla PetscErrorCode DMPlexGetHeightStratum(DM dm, PetscInt height, PetscInt *start, PetscInt *end) 48490adebc6cSBarry Smith { 4850aa50250dSMatthew G. Knepley DMLabel label; 485163d1a920SMatthew G. Knepley PetscInt depth, pStart, pEnd; 4852552f7358SJed Brown 4853552f7358SJed Brown PetscFunctionBegin; 4854552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4855dadcf809SJacob Faibussowitsch if (start) {PetscValidIntPointer(start, 3); *start = 0;} 4856dadcf809SJacob Faibussowitsch if (end) {PetscValidIntPointer(end, 4); *end = 0;} 48579566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 48580d644c17SKarl Rupp if (pStart == pEnd) PetscFunctionReturn(0); 4859570fa34dSVaclav Hapla if (height < 0) { 486063d1a920SMatthew G. Knepley if (start) *start = pStart; 486163d1a920SMatthew G. Knepley if (end) *end = pEnd; 486263d1a920SMatthew G. Knepley PetscFunctionReturn(0); 4863552f7358SJed Brown } 48649566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 486528b400f6SJacob Faibussowitsch PetscCheck(label,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "No label named depth was found"); 48669566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &depth)); 4867570fa34dSVaclav Hapla PetscCall(DMLabelGetStratumBounds(label, depth-1-height, start, end)); 4868552f7358SJed Brown PetscFunctionReturn(0); 4869552f7358SJed Brown } 4870552f7358SJed Brown 4871ba2698f1SMatthew G. Knepley /*@ 4872ba2698f1SMatthew G. Knepley DMPlexGetPointDepth - Get the depth of a given point 4873ba2698f1SMatthew G. Knepley 4874ba2698f1SMatthew G. Knepley Not Collective 4875ba2698f1SMatthew G. Knepley 4876d8d19677SJose E. Roman Input Parameters: 4877ba2698f1SMatthew G. Knepley + dm - The DMPlex object 4878ba2698f1SMatthew G. Knepley - point - The point 4879ba2698f1SMatthew G. Knepley 4880ba2698f1SMatthew G. Knepley Output Parameter: 4881ba2698f1SMatthew G. Knepley . depth - The depth of the point 4882ba2698f1SMatthew G. Knepley 4883ba2698f1SMatthew G. Knepley Level: intermediate 4884ba2698f1SMatthew G. Knepley 4885db781477SPatrick Sanan .seealso: `DMPlexGetCellType()`, `DMPlexGetDepthLabel()`, `DMPlexGetDepth()`, `DMPlexGetPointHeight()` 4886ba2698f1SMatthew G. Knepley @*/ 4887ba2698f1SMatthew G. Knepley PetscErrorCode DMPlexGetPointDepth(DM dm, PetscInt point, PetscInt *depth) 4888ba2698f1SMatthew G. Knepley { 4889ba2698f1SMatthew G. Knepley PetscFunctionBegin; 4890ba2698f1SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 489140a2aa30SMatthew G. Knepley PetscValidIntPointer(depth, 3); 48929566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->depthLabel, point, depth)); 4893ba2698f1SMatthew G. Knepley PetscFunctionReturn(0); 4894ba2698f1SMatthew G. Knepley } 4895ba2698f1SMatthew G. Knepley 4896ba2698f1SMatthew G. Knepley /*@ 48970c0a32dcSVaclav Hapla DMPlexGetPointHeight - Get the height of a given point 48980c0a32dcSVaclav Hapla 48990c0a32dcSVaclav Hapla Not Collective 49000c0a32dcSVaclav Hapla 4901d8d19677SJose E. Roman Input Parameters: 49020c0a32dcSVaclav Hapla + dm - The DMPlex object 49030c0a32dcSVaclav Hapla - point - The point 49040c0a32dcSVaclav Hapla 49050c0a32dcSVaclav Hapla Output Parameter: 49060c0a32dcSVaclav Hapla . height - The height of the point 49070c0a32dcSVaclav Hapla 49080c0a32dcSVaclav Hapla Level: intermediate 49090c0a32dcSVaclav Hapla 4910db781477SPatrick Sanan .seealso: `DMPlexGetCellType()`, `DMPlexGetDepthLabel()`, `DMPlexGetDepth()`, `DMPlexGetPointDepth()` 49110c0a32dcSVaclav Hapla @*/ 49120c0a32dcSVaclav Hapla PetscErrorCode DMPlexGetPointHeight(DM dm, PetscInt point, PetscInt *height) 49130c0a32dcSVaclav Hapla { 49140c0a32dcSVaclav Hapla PetscInt n, pDepth; 49150c0a32dcSVaclav Hapla 49160c0a32dcSVaclav Hapla PetscFunctionBegin; 49170c0a32dcSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49180c0a32dcSVaclav Hapla PetscValidIntPointer(height, 3); 49199566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(dm->depthLabel, &n)); 49209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->depthLabel, point, &pDepth)); 49210c0a32dcSVaclav Hapla *height = n - 1 - pDepth; /* DAG depth is n-1 */ 49220c0a32dcSVaclav Hapla PetscFunctionReturn(0); 49230c0a32dcSVaclav Hapla } 49240c0a32dcSVaclav Hapla 49250c0a32dcSVaclav Hapla /*@ 4926ba2698f1SMatthew G. Knepley DMPlexGetCellTypeLabel - Get the DMLabel recording the polytope type of each cell 4927ba2698f1SMatthew G. Knepley 4928ba2698f1SMatthew G. Knepley Not Collective 4929ba2698f1SMatthew G. Knepley 4930ba2698f1SMatthew G. Knepley Input Parameter: 4931ba2698f1SMatthew G. Knepley . dm - The DMPlex object 4932ba2698f1SMatthew G. Knepley 4933ba2698f1SMatthew G. Knepley Output Parameter: 4934ba2698f1SMatthew G. Knepley . celltypeLabel - The DMLabel recording cell polytope type 4935ba2698f1SMatthew G. Knepley 4936412e9a14SMatthew G. Knepley Note: This function will trigger automatica computation of cell types. This can be disabled by calling 4937412e9a14SMatthew G. Knepley DMCreateLabel(dm, "celltype") beforehand. 4938412e9a14SMatthew G. Knepley 4939ba2698f1SMatthew G. Knepley Level: developer 4940ba2698f1SMatthew G. Knepley 4941db781477SPatrick Sanan .seealso: `DMPlexGetCellType()`, `DMPlexGetDepthLabel()`, `DMCreateLabel()` 4942ba2698f1SMatthew G. Knepley @*/ 4943ba2698f1SMatthew G. Knepley PetscErrorCode DMPlexGetCellTypeLabel(DM dm, DMLabel *celltypeLabel) 4944ba2698f1SMatthew G. Knepley { 4945ba2698f1SMatthew G. Knepley PetscFunctionBegin; 4946ba2698f1SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4947ba2698f1SMatthew G. Knepley PetscValidPointer(celltypeLabel, 2); 49489566063dSJacob Faibussowitsch if (!dm->celltypeLabel) PetscCall(DMPlexComputeCellTypes(dm)); 4949ba2698f1SMatthew G. Knepley *celltypeLabel = dm->celltypeLabel; 4950ba2698f1SMatthew G. Knepley PetscFunctionReturn(0); 4951ba2698f1SMatthew G. Knepley } 4952ba2698f1SMatthew G. Knepley 4953ba2698f1SMatthew G. Knepley /*@ 4954ba2698f1SMatthew G. Knepley DMPlexGetCellType - Get the polytope type of a given cell 4955ba2698f1SMatthew G. Knepley 4956ba2698f1SMatthew G. Knepley Not Collective 4957ba2698f1SMatthew G. Knepley 4958d8d19677SJose E. Roman Input Parameters: 4959ba2698f1SMatthew G. Knepley + dm - The DMPlex object 4960ba2698f1SMatthew G. Knepley - cell - The cell 4961ba2698f1SMatthew G. Knepley 4962ba2698f1SMatthew G. Knepley Output Parameter: 4963ba2698f1SMatthew G. Knepley . celltype - The polytope type of the cell 4964ba2698f1SMatthew G. Knepley 4965ba2698f1SMatthew G. Knepley Level: intermediate 4966ba2698f1SMatthew G. Knepley 4967db781477SPatrick Sanan .seealso: `DMPlexGetCellTypeLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetDepth()` 4968ba2698f1SMatthew G. Knepley @*/ 4969ba2698f1SMatthew G. Knepley PetscErrorCode DMPlexGetCellType(DM dm, PetscInt cell, DMPolytopeType *celltype) 4970ba2698f1SMatthew G. Knepley { 4971ba2698f1SMatthew G. Knepley DMLabel label; 4972ba2698f1SMatthew G. Knepley PetscInt ct; 4973ba2698f1SMatthew G. Knepley 4974ba2698f1SMatthew G. Knepley PetscFunctionBegin; 4975ba2698f1SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4976ba2698f1SMatthew G. Knepley PetscValidPointer(celltype, 3); 49779566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &label)); 49789566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, cell, &ct)); 497963a3b9bcSJacob Faibussowitsch PetscCheck(ct >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cell %" PetscInt_FMT " has not been assigned a cell type", cell); 4980ba2698f1SMatthew G. Knepley *celltype = (DMPolytopeType) ct; 4981ba2698f1SMatthew G. Knepley PetscFunctionReturn(0); 4982ba2698f1SMatthew G. Knepley } 4983ba2698f1SMatthew G. Knepley 4984412e9a14SMatthew G. Knepley /*@ 4985412e9a14SMatthew G. Knepley DMPlexSetCellType - Set the polytope type of a given cell 4986412e9a14SMatthew G. Knepley 4987412e9a14SMatthew G. Knepley Not Collective 4988412e9a14SMatthew G. Knepley 4989412e9a14SMatthew G. Knepley Input Parameters: 4990412e9a14SMatthew G. Knepley + dm - The DMPlex object 4991412e9a14SMatthew G. Knepley . cell - The cell 4992412e9a14SMatthew G. Knepley - celltype - The polytope type of the cell 4993412e9a14SMatthew G. Knepley 4994412e9a14SMatthew G. Knepley Note: By default, cell types will be automatically computed using DMPlexComputeCellTypes() before this function 4995412e9a14SMatthew G. Knepley is executed. This function will override the computed type. However, if automatic classification will not succeed 4996412e9a14SMatthew G. Knepley and a user wants to manually specify all types, the classification must be disabled by calling 4997412e9a14SMatthew G. Knepley DMCreaateLabel(dm, "celltype") before getting or setting any cell types. 4998412e9a14SMatthew G. Knepley 4999412e9a14SMatthew G. Knepley Level: advanced 5000412e9a14SMatthew G. Knepley 5001db781477SPatrick Sanan .seealso: `DMPlexGetCellTypeLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetDepth()`, `DMPlexComputeCellTypes()`, `DMCreateLabel()` 5002412e9a14SMatthew G. Knepley @*/ 5003412e9a14SMatthew G. Knepley PetscErrorCode DMPlexSetCellType(DM dm, PetscInt cell, DMPolytopeType celltype) 5004412e9a14SMatthew G. Knepley { 5005412e9a14SMatthew G. Knepley DMLabel label; 5006412e9a14SMatthew G. Knepley 5007412e9a14SMatthew G. Knepley PetscFunctionBegin; 5008412e9a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &label)); 50109566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, cell, celltype)); 5011412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 5012412e9a14SMatthew G. Knepley } 5013412e9a14SMatthew G. Knepley 50140adebc6cSBarry Smith PetscErrorCode DMCreateCoordinateDM_Plex(DM dm, DM *cdm) 50150adebc6cSBarry Smith { 5016efe440bfSMatthew G. Knepley PetscSection section, s; 5017efe440bfSMatthew G. Knepley Mat m; 50183e922f36SToby Isaac PetscInt maxHeight; 5019552f7358SJed Brown 5020552f7358SJed Brown PetscFunctionBegin; 50219566063dSJacob Faibussowitsch PetscCall(DMClone(dm, cdm)); 50229566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxProjectionHeight(dm, &maxHeight)); 50239566063dSJacob Faibussowitsch PetscCall(DMPlexSetMaxProjectionHeight(*cdm, maxHeight)); 50249566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), §ion)); 50259566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(*cdm, section)); 50269566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ion)); 50279566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &s)); 50289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &m)); 50299566063dSJacob Faibussowitsch PetscCall(DMSetDefaultConstraints(*cdm, s, m, NULL)); 50309566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&s)); 50319566063dSJacob Faibussowitsch PetscCall(MatDestroy(&m)); 50328f4c458bSMatthew G. Knepley 50339566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(*cdm, 1)); 50349566063dSJacob Faibussowitsch PetscCall(DMCreateDS(*cdm)); 5035552f7358SJed Brown PetscFunctionReturn(0); 5036552f7358SJed Brown } 5037552f7358SJed Brown 5038f19dbd58SToby Isaac PetscErrorCode DMCreateCoordinateField_Plex(DM dm, DMField *field) 5039f19dbd58SToby Isaac { 5040f19dbd58SToby Isaac Vec coordsLocal; 5041f19dbd58SToby Isaac DM coordsDM; 5042f19dbd58SToby Isaac 5043f19dbd58SToby Isaac PetscFunctionBegin; 5044f19dbd58SToby Isaac *field = NULL; 50459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm,&coordsLocal)); 50469566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm,&coordsDM)); 5047f19dbd58SToby Isaac if (coordsLocal && coordsDM) { 50489566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDS(coordsDM, 0, coordsLocal, field)); 5049f19dbd58SToby Isaac } 5050f19dbd58SToby Isaac PetscFunctionReturn(0); 5051f19dbd58SToby Isaac } 5052f19dbd58SToby Isaac 50537cd05799SMatthew G. Knepley /*@C 50547cd05799SMatthew G. Knepley DMPlexGetConeSection - Return a section which describes the layout of cone data 50557cd05799SMatthew G. Knepley 50567cd05799SMatthew G. Knepley Not Collective 50577cd05799SMatthew G. Knepley 50587cd05799SMatthew G. Knepley Input Parameters: 50597cd05799SMatthew G. Knepley . dm - The DMPlex object 50607cd05799SMatthew G. Knepley 50617cd05799SMatthew G. Knepley Output Parameter: 50627cd05799SMatthew G. Knepley . section - The PetscSection object 50637cd05799SMatthew G. Knepley 50647cd05799SMatthew G. Knepley Level: developer 50657cd05799SMatthew G. Knepley 5066db781477SPatrick Sanan .seealso: `DMPlexGetSupportSection()`, `DMPlexGetCones()`, `DMPlexGetConeOrientations()` 50677cd05799SMatthew G. Knepley @*/ 50680adebc6cSBarry Smith PetscErrorCode DMPlexGetConeSection(DM dm, PetscSection *section) 50690adebc6cSBarry Smith { 5070552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 5071552f7358SJed Brown 5072552f7358SJed Brown PetscFunctionBegin; 5073552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5074552f7358SJed Brown if (section) *section = mesh->coneSection; 5075552f7358SJed Brown PetscFunctionReturn(0); 5076552f7358SJed Brown } 5077552f7358SJed Brown 50787cd05799SMatthew G. Knepley /*@C 50797cd05799SMatthew G. Knepley DMPlexGetSupportSection - Return a section which describes the layout of support data 50807cd05799SMatthew G. Knepley 50817cd05799SMatthew G. Knepley Not Collective 50827cd05799SMatthew G. Knepley 50837cd05799SMatthew G. Knepley Input Parameters: 50847cd05799SMatthew G. Knepley . dm - The DMPlex object 50857cd05799SMatthew G. Knepley 50867cd05799SMatthew G. Knepley Output Parameter: 50877cd05799SMatthew G. Knepley . section - The PetscSection object 50887cd05799SMatthew G. Knepley 50897cd05799SMatthew G. Knepley Level: developer 50907cd05799SMatthew G. Knepley 5091db781477SPatrick Sanan .seealso: `DMPlexGetConeSection()` 50927cd05799SMatthew G. Knepley @*/ 50938cb4d582SMatthew G. Knepley PetscErrorCode DMPlexGetSupportSection(DM dm, PetscSection *section) 50948cb4d582SMatthew G. Knepley { 50958cb4d582SMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 50968cb4d582SMatthew G. Knepley 50978cb4d582SMatthew G. Knepley PetscFunctionBegin; 50988cb4d582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50998cb4d582SMatthew G. Knepley if (section) *section = mesh->supportSection; 51008cb4d582SMatthew G. Knepley PetscFunctionReturn(0); 51018cb4d582SMatthew G. Knepley } 51028cb4d582SMatthew G. Knepley 51037cd05799SMatthew G. Knepley /*@C 51047cd05799SMatthew G. Knepley DMPlexGetCones - Return cone data 51057cd05799SMatthew G. Knepley 51067cd05799SMatthew G. Knepley Not Collective 51077cd05799SMatthew G. Knepley 51087cd05799SMatthew G. Knepley Input Parameters: 51097cd05799SMatthew G. Knepley . dm - The DMPlex object 51107cd05799SMatthew G. Knepley 51117cd05799SMatthew G. Knepley Output Parameter: 51127cd05799SMatthew G. Knepley . cones - The cone for each point 51137cd05799SMatthew G. Knepley 51147cd05799SMatthew G. Knepley Level: developer 51157cd05799SMatthew G. Knepley 5116db781477SPatrick Sanan .seealso: `DMPlexGetConeSection()` 51177cd05799SMatthew G. Knepley @*/ 5118a6dfd86eSKarl Rupp PetscErrorCode DMPlexGetCones(DM dm, PetscInt *cones[]) 5119a6dfd86eSKarl Rupp { 5120552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 5121552f7358SJed Brown 5122552f7358SJed Brown PetscFunctionBegin; 5123552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5124552f7358SJed Brown if (cones) *cones = mesh->cones; 5125552f7358SJed Brown PetscFunctionReturn(0); 5126552f7358SJed Brown } 5127552f7358SJed Brown 51287cd05799SMatthew G. Knepley /*@C 51297cd05799SMatthew G. Knepley DMPlexGetConeOrientations - Return cone orientation data 51307cd05799SMatthew G. Knepley 51317cd05799SMatthew G. Knepley Not Collective 51327cd05799SMatthew G. Knepley 51337cd05799SMatthew G. Knepley Input Parameters: 51347cd05799SMatthew G. Knepley . dm - The DMPlex object 51357cd05799SMatthew G. Knepley 51367cd05799SMatthew G. Knepley Output Parameter: 5137b5a892a1SMatthew G. Knepley . coneOrientations - The array of cone orientations for all points 51387cd05799SMatthew G. Knepley 51397cd05799SMatthew G. Knepley Level: developer 51407cd05799SMatthew G. Knepley 5141b5a892a1SMatthew G. Knepley Notes: 5142b5a892a1SMatthew G. Knepley The PetscSection returned by DMPlexGetConeSection() partitions coneOrientations into cone orientations of particular points as returned by DMPlexGetConeOrientation(). 5143b5a892a1SMatthew G. Knepley 5144b5a892a1SMatthew G. Knepley The meaning of coneOrientations values is detailed in DMPlexGetConeOrientation(). 5145b5a892a1SMatthew G. Knepley 5146db781477SPatrick Sanan .seealso: `DMPlexGetConeSection()`, `DMPlexGetConeOrientation()` 51477cd05799SMatthew G. Knepley @*/ 5148a6dfd86eSKarl Rupp PetscErrorCode DMPlexGetConeOrientations(DM dm, PetscInt *coneOrientations[]) 5149a6dfd86eSKarl Rupp { 5150552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 5151552f7358SJed Brown 5152552f7358SJed Brown PetscFunctionBegin; 5153552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5154552f7358SJed Brown if (coneOrientations) *coneOrientations = mesh->coneOrientations; 5155552f7358SJed Brown PetscFunctionReturn(0); 5156552f7358SJed Brown } 5157552f7358SJed Brown 5158552f7358SJed Brown /******************************** FEM Support **********************************/ 5159552f7358SJed Brown 51609e8305c2SJed Brown /* 51619e8305c2SJed Brown Returns number of components and tensor degree for the field. For interpolated meshes, line should be a point 51629e8305c2SJed Brown representing a line in the section. 51639e8305c2SJed Brown */ 51649e8305c2SJed Brown static PetscErrorCode PetscSectionFieldGetTensorDegree_Private(PetscSection section,PetscInt field,PetscInt line,PetscBool vertexchart,PetscInt *Nc,PetscInt *k) 51659e8305c2SJed Brown { 51669e8305c2SJed Brown PetscFunctionBeginHot; 51679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, field, Nc)); 5168a433471fSStefano Zampini if (line < 0) { 5169a433471fSStefano Zampini *k = 0; 5170a433471fSStefano Zampini *Nc = 0; 5171a433471fSStefano Zampini } else if (vertexchart) { /* If we only have a vertex chart, we must have degree k=1 */ 51729e8305c2SJed Brown *k = 1; 51739e8305c2SJed Brown } else { /* Assume the full interpolated mesh is in the chart; lines in particular */ 51749e8305c2SJed Brown /* An order k SEM disc has k-1 dofs on an edge */ 51759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, line, field, k)); 51769e8305c2SJed Brown *k = *k / *Nc + 1; 51779e8305c2SJed Brown } 51789e8305c2SJed Brown PetscFunctionReturn(0); 51799e8305c2SJed Brown } 51809e8305c2SJed Brown 5181a4355906SMatthew Knepley /*@ 5182bc1eb3faSJed Brown 5183bc1eb3faSJed Brown DMPlexSetClosurePermutationTensor - Create a permutation from the default (BFS) point ordering in the closure, to a 5184bc1eb3faSJed Brown lexicographic ordering over the tensor product cell (i.e., line, quad, hex, etc.), and set this permutation in the 51851bb6d2a8SBarry Smith section provided (or the section of the DM). 5186a4355906SMatthew Knepley 5187a4355906SMatthew Knepley Input Parameters: 5188a4355906SMatthew Knepley + dm - The DM 5189a4355906SMatthew Knepley . point - Either a cell (highest dim point) or an edge (dim 1 point), or PETSC_DETERMINE 5190a4355906SMatthew Knepley - section - The PetscSection to reorder, or NULL for the default section 5191a4355906SMatthew Knepley 5192a4355906SMatthew Knepley Note: The point is used to determine the number of dofs/field on an edge. For SEM, this is related to the polynomial 5193a4355906SMatthew Knepley degree of the basis. 5194a4355906SMatthew Knepley 5195bc1eb3faSJed Brown Example: 5196bc1eb3faSJed Brown A typical interpolated single-quad mesh might order points as 5197bc1eb3faSJed Brown .vb 5198bc1eb3faSJed Brown [c0, v1, v2, v3, v4, e5, e6, e7, e8] 5199bc1eb3faSJed Brown 5200bc1eb3faSJed Brown v4 -- e6 -- v3 5201bc1eb3faSJed Brown | | 5202bc1eb3faSJed Brown e7 c0 e8 5203bc1eb3faSJed Brown | | 5204bc1eb3faSJed Brown v1 -- e5 -- v2 5205bc1eb3faSJed Brown .ve 5206bc1eb3faSJed Brown 5207bc1eb3faSJed Brown (There is no significance to the ordering described here.) The default section for a Q3 quad might typically assign 5208bc1eb3faSJed Brown dofs in the order of points, e.g., 5209bc1eb3faSJed Brown .vb 5210bc1eb3faSJed Brown c0 -> [0,1,2,3] 5211bc1eb3faSJed Brown v1 -> [4] 5212bc1eb3faSJed Brown ... 5213bc1eb3faSJed Brown e5 -> [8, 9] 5214bc1eb3faSJed Brown .ve 5215bc1eb3faSJed Brown 5216bc1eb3faSJed Brown which corresponds to the dofs 5217bc1eb3faSJed Brown .vb 5218bc1eb3faSJed Brown 6 10 11 7 5219bc1eb3faSJed Brown 13 2 3 15 5220bc1eb3faSJed Brown 12 0 1 14 5221bc1eb3faSJed Brown 4 8 9 5 5222bc1eb3faSJed Brown .ve 5223bc1eb3faSJed Brown 5224bc1eb3faSJed Brown The closure in BFS ordering works through height strata (cells, edges, vertices) to produce the ordering 5225bc1eb3faSJed Brown .vb 5226bc1eb3faSJed Brown 0 1 2 3 8 9 14 15 11 10 13 12 4 5 7 6 5227bc1eb3faSJed Brown .ve 5228bc1eb3faSJed Brown 5229bc1eb3faSJed Brown After calling DMPlexSetClosurePermutationTensor(), the closure will be ordered lexicographically, 5230bc1eb3faSJed Brown .vb 5231bc1eb3faSJed Brown 4 8 9 5 12 0 1 14 13 2 3 15 6 10 11 7 5232bc1eb3faSJed Brown .ve 5233bc1eb3faSJed Brown 5234a4355906SMatthew Knepley Level: developer 5235a4355906SMatthew Knepley 5236db781477SPatrick Sanan .seealso: `DMGetLocalSection()`, `PetscSectionSetClosurePermutation()`, `DMSetGlobalSection()` 5237a4355906SMatthew Knepley @*/ 5238bc1eb3faSJed Brown PetscErrorCode DMPlexSetClosurePermutationTensor(DM dm, PetscInt point, PetscSection section) 52393194fc30SMatthew G. Knepley { 52407391a63aSMatthew G. Knepley DMLabel label; 5241bb197d40SJed Brown PetscInt dim, depth = -1, eStart = -1, Nf; 52429e8305c2SJed Brown PetscBool vertexchart; 52433194fc30SMatthew G. Knepley 52443194fc30SMatthew G. Knepley PetscFunctionBegin; 52459566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 5246a433471fSStefano Zampini if (dim < 1) PetscFunctionReturn(0); 5247a433471fSStefano Zampini if (point < 0) { 5248a433471fSStefano Zampini PetscInt sStart,sEnd; 5249a433471fSStefano Zampini 52509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 1, &sStart, &sEnd)); 5251a433471fSStefano Zampini point = sEnd-sStart ? sStart : point; 5252a433471fSStefano Zampini } 52539566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 52549566063dSJacob Faibussowitsch if (point >= 0) PetscCall(DMLabelGetValue(label, point, &depth)); 52559566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 52567391a63aSMatthew G. Knepley if (depth == 1) {eStart = point;} 52577391a63aSMatthew G. Knepley else if (depth == dim) { 52587391a63aSMatthew G. Knepley const PetscInt *cone; 52597391a63aSMatthew G. Knepley 52609566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 5261d4e6627bSStefano Zampini if (dim == 2) eStart = cone[0]; 5262d4e6627bSStefano Zampini else if (dim == 3) { 5263d4e6627bSStefano Zampini const PetscInt *cone2; 52649566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[0], &cone2)); 5265d4e6627bSStefano Zampini eStart = cone2[0]; 526663a3b9bcSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " of depth %" PetscInt_FMT " cannot be used to bootstrap spectral ordering for dim %" PetscInt_FMT, point, depth, dim); 526763a3b9bcSJacob Faibussowitsch } else PetscCheck(depth < 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " of depth %" PetscInt_FMT " cannot be used to bootstrap spectral ordering for dim %" PetscInt_FMT, point, depth, dim); 52689e8305c2SJed Brown { /* Determine whether the chart covers all points or just vertices. */ 52699e8305c2SJed Brown PetscInt pStart,pEnd,cStart,cEnd; 52709566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,0,&pStart,&pEnd)); 52719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section,&cStart,&cEnd)); 5272796d0a68SJed Brown if (pStart == cStart && pEnd == cEnd) vertexchart = PETSC_TRUE; /* Only vertices are in the chart */ 5273796d0a68SJed Brown else if (cStart <= point && point < cEnd) vertexchart = PETSC_FALSE; /* Some interpolated points exist in the chart */ 5274796d0a68SJed Brown else vertexchart = PETSC_TRUE; /* Some interpolated points are not in chart; assume dofs only at cells and vertices */ 52759e8305c2SJed Brown } 52769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 5277bb197d40SJed Brown for (PetscInt d=1; d<=dim; d++) { 5278bb197d40SJed Brown PetscInt k, f, Nc, c, i, j, size = 0, offset = 0, foffset = 0; 5279bb197d40SJed Brown PetscInt *perm; 5280bb197d40SJed Brown 52813194fc30SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 52829566063dSJacob Faibussowitsch PetscCall(PetscSectionFieldGetTensorDegree_Private(section,f,eStart,vertexchart,&Nc,&k)); 5283bb197d40SJed Brown size += PetscPowInt(k+1, d)*Nc; 52843194fc30SMatthew G. Knepley } 52859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &perm)); 52863194fc30SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5287bb197d40SJed Brown switch (d) { 5288babf31e0SJed Brown case 1: 52899566063dSJacob Faibussowitsch PetscCall(PetscSectionFieldGetTensorDegree_Private(section,f,eStart,vertexchart,&Nc,&k)); 5290babf31e0SJed Brown /* 5291babf31e0SJed Brown Original ordering is [ edge of length k-1; vtx0; vtx1 ] 5292babf31e0SJed Brown We want [ vtx0; edge of length k-1; vtx1 ] 5293babf31e0SJed Brown */ 5294babf31e0SJed Brown for (c=0; c<Nc; c++,offset++) perm[offset] = (k-1)*Nc + c + foffset; 5295babf31e0SJed Brown for (i=0; i<k-1; i++) for (c=0; c<Nc; c++,offset++) perm[offset] = i*Nc + c + foffset; 5296babf31e0SJed Brown for (c=0; c<Nc; c++,offset++) perm[offset] = k*Nc + c + foffset; 5297babf31e0SJed Brown foffset = offset; 5298babf31e0SJed Brown break; 529989eabcffSMatthew G. Knepley case 2: 53003194fc30SMatthew G. Knepley /* The original quad closure is oriented clockwise, {f, e_b, e_r, e_t, e_l, v_lb, v_rb, v_tr, v_tl} */ 53019566063dSJacob Faibussowitsch PetscCall(PetscSectionFieldGetTensorDegree_Private(section,f,eStart,vertexchart,&Nc,&k)); 53023194fc30SMatthew G. Knepley /* The SEM order is 53033194fc30SMatthew G. Knepley 53043194fc30SMatthew G. Knepley v_lb, {e_b}, v_rb, 530589eabcffSMatthew G. Knepley e^{(k-1)-i}_l, {f^{i*(k-1)}}, e^i_r, 53063194fc30SMatthew G. Knepley v_lt, reverse {e_t}, v_rt 53073194fc30SMatthew G. Knepley */ 53083194fc30SMatthew G. Knepley { 53093194fc30SMatthew G. Knepley const PetscInt of = 0; 53103194fc30SMatthew G. Knepley const PetscInt oeb = of + PetscSqr(k-1); 53113194fc30SMatthew G. Knepley const PetscInt oer = oeb + (k-1); 53123194fc30SMatthew G. Knepley const PetscInt oet = oer + (k-1); 53133194fc30SMatthew G. Knepley const PetscInt oel = oet + (k-1); 53143194fc30SMatthew G. Knepley const PetscInt ovlb = oel + (k-1); 53153194fc30SMatthew G. Knepley const PetscInt ovrb = ovlb + 1; 53163194fc30SMatthew G. Knepley const PetscInt ovrt = ovrb + 1; 53173194fc30SMatthew G. Knepley const PetscInt ovlt = ovrt + 1; 53183194fc30SMatthew G. Knepley PetscInt o; 53193194fc30SMatthew G. Knepley 53203194fc30SMatthew G. Knepley /* bottom */ 53213194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovlb*Nc + c + foffset; 53223194fc30SMatthew G. Knepley for (o = oeb; o < oer; ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 53233194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovrb*Nc + c + foffset; 53243194fc30SMatthew G. Knepley /* middle */ 53253194fc30SMatthew G. Knepley for (i = 0; i < k-1; ++i) { 53263194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oel+(k-2)-i)*Nc + c + foffset; 53273194fc30SMatthew G. Knepley for (o = of+(k-1)*i; o < of+(k-1)*(i+1); ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 53283194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oer+i)*Nc + c + foffset; 53293194fc30SMatthew G. Knepley } 53303194fc30SMatthew G. Knepley /* top */ 53313194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovlt*Nc + c + foffset; 53323194fc30SMatthew G. Knepley for (o = oel-1; o >= oet; --o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 53333194fc30SMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovrt*Nc + c + foffset; 53343194fc30SMatthew G. Knepley foffset = offset; 53353194fc30SMatthew G. Knepley } 533689eabcffSMatthew G. Knepley break; 533789eabcffSMatthew G. Knepley case 3: 533889eabcffSMatthew G. Knepley /* The original hex closure is 533989eabcffSMatthew G. Knepley 534089eabcffSMatthew G. Knepley {c, 534189eabcffSMatthew G. Knepley f_b, f_t, f_f, f_b, f_r, f_l, 534289eabcffSMatthew G. Knepley e_bl, e_bb, e_br, e_bf, e_tf, e_tr, e_tb, e_tl, e_rf, e_lf, e_lb, e_rb, 534389eabcffSMatthew G. Knepley v_blf, v_blb, v_brb, v_brf, v_tlf, v_trf, v_trb, v_tlb} 534489eabcffSMatthew G. Knepley */ 53459566063dSJacob Faibussowitsch PetscCall(PetscSectionFieldGetTensorDegree_Private(section,f,eStart,vertexchart,&Nc,&k)); 534689eabcffSMatthew G. Knepley /* The SEM order is 534789eabcffSMatthew G. Knepley Bottom Slice 534889eabcffSMatthew G. Knepley v_blf, {e^{(k-1)-n}_bf}, v_brf, 534989eabcffSMatthew G. Knepley e^{i}_bl, f^{n*(k-1)+(k-1)-i}_b, e^{(k-1)-i}_br, 535089eabcffSMatthew G. Knepley v_blb, {e_bb}, v_brb, 535189eabcffSMatthew G. Knepley 535289eabcffSMatthew G. Knepley Middle Slice (j) 535389eabcffSMatthew G. Knepley {e^{(k-1)-j}_lf}, {f^{j*(k-1)+n}_f}, e^j_rf, 535489eabcffSMatthew G. Knepley f^{i*(k-1)+j}_l, {c^{(j*(k-1) + i)*(k-1)+n}_t}, f^{j*(k-1)+i}_r, 535589eabcffSMatthew G. Knepley e^j_lb, {f^{j*(k-1)+(k-1)-n}_b}, e^{(k-1)-j}_rb, 535689eabcffSMatthew G. Knepley 535789eabcffSMatthew G. Knepley Top Slice 535889eabcffSMatthew G. Knepley v_tlf, {e_tf}, v_trf, 535989eabcffSMatthew G. Knepley e^{(k-1)-i}_tl, {f^{i*(k-1)}_t}, e^{i}_tr, 536089eabcffSMatthew G. Knepley v_tlb, {e^{(k-1)-n}_tb}, v_trb, 536189eabcffSMatthew G. Knepley */ 536289eabcffSMatthew G. Knepley { 536389eabcffSMatthew G. Knepley const PetscInt oc = 0; 536489eabcffSMatthew G. Knepley const PetscInt ofb = oc + PetscSqr(k-1)*(k-1); 536589eabcffSMatthew G. Knepley const PetscInt oft = ofb + PetscSqr(k-1); 536689eabcffSMatthew G. Knepley const PetscInt off = oft + PetscSqr(k-1); 536789eabcffSMatthew G. Knepley const PetscInt ofk = off + PetscSqr(k-1); 536889eabcffSMatthew G. Knepley const PetscInt ofr = ofk + PetscSqr(k-1); 536989eabcffSMatthew G. Knepley const PetscInt ofl = ofr + PetscSqr(k-1); 537089eabcffSMatthew G. Knepley const PetscInt oebl = ofl + PetscSqr(k-1); 537189eabcffSMatthew G. Knepley const PetscInt oebb = oebl + (k-1); 537289eabcffSMatthew G. Knepley const PetscInt oebr = oebb + (k-1); 537389eabcffSMatthew G. Knepley const PetscInt oebf = oebr + (k-1); 537489eabcffSMatthew G. Knepley const PetscInt oetf = oebf + (k-1); 537589eabcffSMatthew G. Knepley const PetscInt oetr = oetf + (k-1); 537689eabcffSMatthew G. Knepley const PetscInt oetb = oetr + (k-1); 537789eabcffSMatthew G. Knepley const PetscInt oetl = oetb + (k-1); 537889eabcffSMatthew G. Knepley const PetscInt oerf = oetl + (k-1); 537989eabcffSMatthew G. Knepley const PetscInt oelf = oerf + (k-1); 538089eabcffSMatthew G. Knepley const PetscInt oelb = oelf + (k-1); 538189eabcffSMatthew G. Knepley const PetscInt oerb = oelb + (k-1); 538289eabcffSMatthew G. Knepley const PetscInt ovblf = oerb + (k-1); 538389eabcffSMatthew G. Knepley const PetscInt ovblb = ovblf + 1; 538489eabcffSMatthew G. Knepley const PetscInt ovbrb = ovblb + 1; 538589eabcffSMatthew G. Knepley const PetscInt ovbrf = ovbrb + 1; 538689eabcffSMatthew G. Knepley const PetscInt ovtlf = ovbrf + 1; 538789eabcffSMatthew G. Knepley const PetscInt ovtrf = ovtlf + 1; 538889eabcffSMatthew G. Knepley const PetscInt ovtrb = ovtrf + 1; 538989eabcffSMatthew G. Knepley const PetscInt ovtlb = ovtrb + 1; 539089eabcffSMatthew G. Knepley PetscInt o, n; 539189eabcffSMatthew G. Knepley 539289eabcffSMatthew G. Knepley /* Bottom Slice */ 539389eabcffSMatthew G. Knepley /* bottom */ 539489eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovblf*Nc + c + foffset; 539589eabcffSMatthew G. Knepley for (o = oetf-1; o >= oebf; --o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 539689eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovbrf*Nc + c + foffset; 539789eabcffSMatthew G. Knepley /* middle */ 539889eabcffSMatthew G. Knepley for (i = 0; i < k-1; ++i) { 539989eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oebl+i)*Nc + c + foffset; 5400316b7f87SMax Rietmann for (n = 0; n < k-1; ++n) {o = ofb+n*(k-1)+i; for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset;} 540189eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oebr+(k-2)-i)*Nc + c + foffset; 54023194fc30SMatthew G. Knepley } 540389eabcffSMatthew G. Knepley /* top */ 540489eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovblb*Nc + c + foffset; 540589eabcffSMatthew G. Knepley for (o = oebb; o < oebr; ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 540689eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovbrb*Nc + c + foffset; 540789eabcffSMatthew G. Knepley 540889eabcffSMatthew G. Knepley /* Middle Slice */ 540989eabcffSMatthew G. Knepley for (j = 0; j < k-1; ++j) { 541089eabcffSMatthew G. Knepley /* bottom */ 541189eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oelf+(k-2)-j)*Nc + c + foffset; 541289eabcffSMatthew G. Knepley for (o = off+j*(k-1); o < off+(j+1)*(k-1); ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 541389eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oerf+j)*Nc + c + foffset; 541489eabcffSMatthew G. Knepley /* middle */ 541589eabcffSMatthew G. Knepley for (i = 0; i < k-1; ++i) { 541689eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (ofl+i*(k-1)+j)*Nc + c + foffset; 541789eabcffSMatthew G. Knepley for (n = 0; n < k-1; ++n) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oc+(j*(k-1)+i)*(k-1)+n)*Nc + c + foffset; 541889eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (ofr+j*(k-1)+i)*Nc + c + foffset; 541989eabcffSMatthew G. Knepley } 542089eabcffSMatthew G. Knepley /* top */ 542189eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oelb+j)*Nc + c + foffset; 542289eabcffSMatthew G. Knepley for (o = ofk+j*(k-1)+(k-2); o >= ofk+j*(k-1); --o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 542389eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oerb+(k-2)-j)*Nc + c + foffset; 542489eabcffSMatthew G. Knepley } 542589eabcffSMatthew G. Knepley 542689eabcffSMatthew G. Knepley /* Top Slice */ 542789eabcffSMatthew G. Knepley /* bottom */ 542889eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovtlf*Nc + c + foffset; 542989eabcffSMatthew G. Knepley for (o = oetf; o < oetr; ++o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 543089eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovtrf*Nc + c + foffset; 543189eabcffSMatthew G. Knepley /* middle */ 543289eabcffSMatthew G. Knepley for (i = 0; i < k-1; ++i) { 543389eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oetl+(k-2)-i)*Nc + c + foffset; 543489eabcffSMatthew G. Knepley for (n = 0; n < k-1; ++n) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oft+i*(k-1)+n)*Nc + c + foffset; 543589eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = (oetr+i)*Nc + c + foffset; 543689eabcffSMatthew G. Knepley } 543789eabcffSMatthew G. Knepley /* top */ 543889eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovtlb*Nc + c + foffset; 543989eabcffSMatthew G. Knepley for (o = oetl-1; o >= oetb; --o) for (c = 0; c < Nc; ++c, ++offset) perm[offset] = o*Nc + c + foffset; 544089eabcffSMatthew G. Knepley for (c = 0; c < Nc; ++c, ++offset) perm[offset] = ovtrb*Nc + c + foffset; 544189eabcffSMatthew G. Knepley 544289eabcffSMatthew G. Knepley foffset = offset; 544389eabcffSMatthew G. Knepley } 544489eabcffSMatthew G. Knepley break; 544563a3b9bcSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "No spectral ordering for dimension %" PetscInt_FMT, d); 544689eabcffSMatthew G. Knepley } 544789eabcffSMatthew G. Knepley } 544863a3b9bcSJacob Faibussowitsch PetscCheck(offset == size,PetscObjectComm((PetscObject) dm), PETSC_ERR_PLIB, "Number of permutation entries %" PetscInt_FMT " != %" PetscInt_FMT, offset, size); 54493194fc30SMatthew G. Knepley /* Check permutation */ 54503194fc30SMatthew G. Knepley { 54513194fc30SMatthew G. Knepley PetscInt *check; 54523194fc30SMatthew G. Knepley 54539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &check)); 54541dca8a05SBarry Smith for (i = 0; i < size; ++i) { 54551dca8a05SBarry Smith check[i] = -1; 54561dca8a05SBarry Smith PetscCheck(perm[i] >= 0 && perm[i] < size,PetscObjectComm((PetscObject) dm), PETSC_ERR_PLIB, "Invalid permutation index p[%" PetscInt_FMT "] = %" PetscInt_FMT, i, perm[i]); 54571dca8a05SBarry Smith } 54583194fc30SMatthew G. Knepley for (i = 0; i < size; ++i) check[perm[i]] = i; 54591dca8a05SBarry Smith for (i = 0; i < size; ++i) PetscCheck(check[i] >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_PLIB, "Missing permutation index %" PetscInt_FMT, i); 54609566063dSJacob Faibussowitsch PetscCall(PetscFree(check)); 54613194fc30SMatthew G. Knepley } 54629566063dSJacob Faibussowitsch PetscCall(PetscSectionSetClosurePermutation_Internal(section, (PetscObject) dm, d, size, PETSC_OWN_POINTER, perm)); 5463a05c9aa3SJed Brown if (d == dim) { // Add permutation for localized (in case this is a coordinate DM) 5464a05c9aa3SJed Brown PetscInt *loc_perm; 54659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size*2, &loc_perm)); 5466a05c9aa3SJed Brown for (PetscInt i=0; i<size; i++) { 5467a05c9aa3SJed Brown loc_perm[i] = perm[i]; 5468a05c9aa3SJed Brown loc_perm[size+i] = size + perm[i]; 5469a05c9aa3SJed Brown } 54709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetClosurePermutation_Internal(section, (PetscObject) dm, d, size*2, PETSC_OWN_POINTER, loc_perm)); 5471a05c9aa3SJed Brown } 5472bb197d40SJed Brown } 54733194fc30SMatthew G. Knepley PetscFunctionReturn(0); 54743194fc30SMatthew G. Knepley } 54753194fc30SMatthew G. Knepley 5476e071409bSToby Isaac PetscErrorCode DMPlexGetPointDualSpaceFEM(DM dm, PetscInt point, PetscInt field, PetscDualSpace *dspace) 5477e071409bSToby Isaac { 5478e071409bSToby Isaac PetscDS prob; 5479e071409bSToby Isaac PetscInt depth, Nf, h; 5480e071409bSToby Isaac DMLabel label; 5481e071409bSToby Isaac 5482e071409bSToby Isaac PetscFunctionBeginHot; 54839566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 5484e071409bSToby Isaac Nf = prob->Nf; 5485e071409bSToby Isaac label = dm->depthLabel; 5486e071409bSToby Isaac *dspace = NULL; 5487e071409bSToby Isaac if (field < Nf) { 5488e071409bSToby Isaac PetscObject disc = prob->disc[field]; 5489e071409bSToby Isaac 5490e071409bSToby Isaac if (disc->classid == PETSCFE_CLASSID) { 5491e071409bSToby Isaac PetscDualSpace dsp; 5492e071409bSToby Isaac 54939566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace((PetscFE)disc,&dsp)); 54949566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label,&depth)); 54959566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label,point,&h)); 5496e071409bSToby Isaac h = depth - 1 - h; 5497e071409bSToby Isaac if (h) { 54989566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetHeightSubspace(dsp,h,dspace)); 5499e071409bSToby Isaac } else { 5500e071409bSToby Isaac *dspace = dsp; 5501e071409bSToby Isaac } 5502e071409bSToby Isaac } 5503e071409bSToby Isaac } 5504e071409bSToby Isaac PetscFunctionReturn(0); 5505e071409bSToby Isaac } 5506e071409bSToby Isaac 55079fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexVecGetClosure_Depth1_Static(DM dm, PetscSection section, Vec v, PetscInt point, PetscInt *csize, PetscScalar *values[]) 5508a6dfd86eSKarl Rupp { 5509552f7358SJed Brown PetscScalar *array, *vArray; 5510d9917b9dSMatthew G. Knepley const PetscInt *cone, *coneO; 55111a271a75SMatthew G. Knepley PetscInt pStart, pEnd, p, numPoints, size = 0, offset = 0; 5512552f7358SJed Brown 55131b406b76SMatthew G. Knepley PetscFunctionBeginHot; 55149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 55159566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &numPoints)); 55169566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 55179566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &coneO)); 55183f7cbbe7SMatthew G. Knepley if (!values || !*values) { 55199df71ca4SMatthew G. Knepley if ((point >= pStart) && (point < pEnd)) { 55209df71ca4SMatthew G. Knepley PetscInt dof; 5521d9917b9dSMatthew G. Knepley 55229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 55239df71ca4SMatthew G. Knepley size += dof; 55249df71ca4SMatthew G. Knepley } 55259df71ca4SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 55269df71ca4SMatthew G. Knepley const PetscInt cp = cone[p]; 55272a3aaacfSMatthew G. Knepley PetscInt dof; 55285a1bb5cfSMatthew G. Knepley 55295a1bb5cfSMatthew G. Knepley if ((cp < pStart) || (cp >= pEnd)) continue; 55309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, cp, &dof)); 55315a1bb5cfSMatthew G. Knepley size += dof; 55325a1bb5cfSMatthew G. Knepley } 55333f7cbbe7SMatthew G. Knepley if (!values) { 55343f7cbbe7SMatthew G. Knepley if (csize) *csize = size; 55353f7cbbe7SMatthew G. Knepley PetscFunctionReturn(0); 55363f7cbbe7SMatthew G. Knepley } 55379566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, size, MPIU_SCALAR, &array)); 5538982e9ed1SMatthew G. Knepley } else { 5539982e9ed1SMatthew G. Knepley array = *values; 5540982e9ed1SMatthew G. Knepley } 55419df71ca4SMatthew G. Knepley size = 0; 55429566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &vArray)); 55439df71ca4SMatthew G. Knepley if ((point >= pStart) && (point < pEnd)) { 55449df71ca4SMatthew G. Knepley PetscInt dof, off, d; 55459df71ca4SMatthew G. Knepley PetscScalar *varr; 5546d9917b9dSMatthew G. Knepley 55479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 55489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, point, &off)); 55499df71ca4SMatthew G. Knepley varr = &vArray[off]; 55501a271a75SMatthew G. Knepley for (d = 0; d < dof; ++d, ++offset) { 55511a271a75SMatthew G. Knepley array[offset] = varr[d]; 55529df71ca4SMatthew G. Knepley } 55539df71ca4SMatthew G. Knepley size += dof; 55549df71ca4SMatthew G. Knepley } 55559df71ca4SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 55569df71ca4SMatthew G. Knepley const PetscInt cp = cone[p]; 55579df71ca4SMatthew G. Knepley PetscInt o = coneO[p]; 55585a1bb5cfSMatthew G. Knepley PetscInt dof, off, d; 55595a1bb5cfSMatthew G. Knepley PetscScalar *varr; 55605a1bb5cfSMatthew G. Knepley 556152ed52e8SMatthew G. Knepley if ((cp < pStart) || (cp >= pEnd)) continue; 55629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, cp, &dof)); 55639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, cp, &off)); 55645a1bb5cfSMatthew G. Knepley varr = &vArray[off]; 55655a1bb5cfSMatthew G. Knepley if (o >= 0) { 55661a271a75SMatthew G. Knepley for (d = 0; d < dof; ++d, ++offset) { 55671a271a75SMatthew G. Knepley array[offset] = varr[d]; 55685a1bb5cfSMatthew G. Knepley } 55695a1bb5cfSMatthew G. Knepley } else { 55701a271a75SMatthew G. Knepley for (d = dof-1; d >= 0; --d, ++offset) { 55711a271a75SMatthew G. Knepley array[offset] = varr[d]; 55725a1bb5cfSMatthew G. Knepley } 55735a1bb5cfSMatthew G. Knepley } 55749df71ca4SMatthew G. Knepley size += dof; 55755a1bb5cfSMatthew G. Knepley } 55769566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &vArray)); 55779df71ca4SMatthew G. Knepley if (!*values) { 55785a1bb5cfSMatthew G. Knepley if (csize) *csize = size; 55795a1bb5cfSMatthew G. Knepley *values = array; 55809df71ca4SMatthew G. Knepley } else { 558163a3b9bcSJacob Faibussowitsch PetscCheck(size <= *csize,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Size of input array %" PetscInt_FMT " < actual size %" PetscInt_FMT, *csize, size); 55828c312ff3SMatthew G. Knepley *csize = size; 55839df71ca4SMatthew G. Knepley } 55845a1bb5cfSMatthew G. Knepley PetscFunctionReturn(0); 55855a1bb5cfSMatthew G. Knepley } 5586d9917b9dSMatthew G. Knepley 558727f02ce8SMatthew G. Knepley /* Compress out points not in the section */ 55889fbee547SJacob Faibussowitsch static inline PetscErrorCode CompressPoints_Private(PetscSection section, PetscInt *numPoints, PetscInt points[]) 558927f02ce8SMatthew G. Knepley { 559027f02ce8SMatthew G. Knepley const PetscInt np = *numPoints; 559127f02ce8SMatthew G. Knepley PetscInt pStart, pEnd, p, q; 559227f02ce8SMatthew G. Knepley 55939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 559427f02ce8SMatthew G. Knepley for (p = 0, q = 0; p < np; ++p) { 559527f02ce8SMatthew G. Knepley const PetscInt r = points[p*2]; 559627f02ce8SMatthew G. Knepley if ((r >= pStart) && (r < pEnd)) { 559727f02ce8SMatthew G. Knepley points[q*2] = r; 559827f02ce8SMatthew G. Knepley points[q*2+1] = points[p*2+1]; 559927f02ce8SMatthew G. Knepley ++q; 560027f02ce8SMatthew G. Knepley } 560127f02ce8SMatthew G. Knepley } 560227f02ce8SMatthew G. Knepley *numPoints = q; 560327f02ce8SMatthew G. Knepley return 0; 560427f02ce8SMatthew G. Knepley } 560527f02ce8SMatthew G. Knepley 560697529cf3SJed Brown /* Compressed closure does not apply closure permutation */ 56071dc59d61SMatthew G. Knepley PetscErrorCode DMPlexGetCompressedClosure(DM dm, PetscSection section, PetscInt point, PetscInt *numPoints, PetscInt **points, PetscSection *clSec, IS *clPoints, const PetscInt **clp) 5608923c78e0SToby Isaac { 560927f02ce8SMatthew G. Knepley const PetscInt *cla = NULL; 5610923c78e0SToby Isaac PetscInt np, *pts = NULL; 5611923c78e0SToby Isaac 5612923c78e0SToby Isaac PetscFunctionBeginHot; 56139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureIndex(section, (PetscObject) dm, clSec, clPoints)); 561427f02ce8SMatthew G. Knepley if (*clPoints) { 5615923c78e0SToby Isaac PetscInt dof, off; 5616923c78e0SToby Isaac 56179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(*clSec, point, &dof)); 56189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(*clSec, point, &off)); 56199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(*clPoints, &cla)); 5620923c78e0SToby Isaac np = dof/2; 5621923c78e0SToby Isaac pts = (PetscInt *) &cla[off]; 562227f02ce8SMatthew G. Knepley } else { 56239566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &np, &pts)); 56249566063dSJacob Faibussowitsch PetscCall(CompressPoints_Private(section, &np, pts)); 5625923c78e0SToby Isaac } 5626923c78e0SToby Isaac *numPoints = np; 5627923c78e0SToby Isaac *points = pts; 5628923c78e0SToby Isaac *clp = cla; 5629923c78e0SToby Isaac PetscFunctionReturn(0); 5630923c78e0SToby Isaac } 5631923c78e0SToby Isaac 56321dc59d61SMatthew G. Knepley PetscErrorCode DMPlexRestoreCompressedClosure(DM dm, PetscSection section, PetscInt point, PetscInt *numPoints, PetscInt **points, PetscSection *clSec, IS *clPoints, const PetscInt **clp) 5633923c78e0SToby Isaac { 5634923c78e0SToby Isaac PetscFunctionBeginHot; 5635923c78e0SToby Isaac if (!*clPoints) { 56369566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, numPoints, points)); 5637923c78e0SToby Isaac } else { 56389566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(*clPoints, clp)); 5639923c78e0SToby Isaac } 5640923c78e0SToby Isaac *numPoints = 0; 5641923c78e0SToby Isaac *points = NULL; 5642923c78e0SToby Isaac *clSec = NULL; 5643923c78e0SToby Isaac *clPoints = NULL; 5644923c78e0SToby Isaac *clp = NULL; 5645923c78e0SToby Isaac PetscFunctionReturn(0); 5646923c78e0SToby Isaac } 5647923c78e0SToby Isaac 56489fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexVecGetClosure_Static(DM dm, PetscSection section, PetscInt numPoints, const PetscInt points[], const PetscInt clperm[], const PetscScalar vArray[], PetscInt *size, PetscScalar array[]) 56491a271a75SMatthew G. Knepley { 56501a271a75SMatthew G. Knepley PetscInt offset = 0, p; 565197e99dd9SToby Isaac const PetscInt **perms = NULL; 565297e99dd9SToby Isaac const PetscScalar **flips = NULL; 56531a271a75SMatthew G. Knepley 56541a271a75SMatthew G. Knepley PetscFunctionBeginHot; 5655fe02ba77SJed Brown *size = 0; 56569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(section,numPoints,points,&perms,&flips)); 565797e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 565897e99dd9SToby Isaac const PetscInt point = points[2*p]; 565997e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 566097e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 56611a271a75SMatthew G. Knepley PetscInt dof, off, d; 56621a271a75SMatthew G. Knepley const PetscScalar *varr; 56631a271a75SMatthew G. Knepley 56649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 56659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, point, &off)); 56661a271a75SMatthew G. Knepley varr = &vArray[off]; 566797e99dd9SToby Isaac if (clperm) { 566897e99dd9SToby Isaac if (perm) { 566997e99dd9SToby Isaac for (d = 0; d < dof; d++) array[clperm[offset + perm[d]]] = varr[d]; 56701a271a75SMatthew G. Knepley } else { 567197e99dd9SToby Isaac for (d = 0; d < dof; d++) array[clperm[offset + d ]] = varr[d]; 567297e99dd9SToby Isaac } 567397e99dd9SToby Isaac if (flip) { 567497e99dd9SToby Isaac for (d = 0; d < dof; d++) array[clperm[offset + d ]] *= flip[d]; 567597e99dd9SToby Isaac } 567697e99dd9SToby Isaac } else { 567797e99dd9SToby Isaac if (perm) { 567897e99dd9SToby Isaac for (d = 0; d < dof; d++) array[offset + perm[d]] = varr[d]; 567997e99dd9SToby Isaac } else { 568097e99dd9SToby Isaac for (d = 0; d < dof; d++) array[offset + d ] = varr[d]; 568197e99dd9SToby Isaac } 568297e99dd9SToby Isaac if (flip) { 568397e99dd9SToby Isaac for (d = 0; d < dof; d++) array[offset + d ] *= flip[d]; 56841a271a75SMatthew G. Knepley } 56851a271a75SMatthew G. Knepley } 568697e99dd9SToby Isaac offset += dof; 568797e99dd9SToby Isaac } 56889566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(section,numPoints,points,&perms,&flips)); 56891a271a75SMatthew G. Knepley *size = offset; 56901a271a75SMatthew G. Knepley PetscFunctionReturn(0); 56911a271a75SMatthew G. Knepley } 56921a271a75SMatthew G. Knepley 56939fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexVecGetClosure_Fields_Static(DM dm, PetscSection section, PetscInt numPoints, const PetscInt points[], PetscInt numFields, const PetscInt clperm[], const PetscScalar vArray[], PetscInt *size, PetscScalar array[]) 56941a271a75SMatthew G. Knepley { 56951a271a75SMatthew G. Knepley PetscInt offset = 0, f; 56961a271a75SMatthew G. Knepley 56971a271a75SMatthew G. Knepley PetscFunctionBeginHot; 5698fe02ba77SJed Brown *size = 0; 56991a271a75SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 570097e99dd9SToby Isaac PetscInt p; 570197e99dd9SToby Isaac const PetscInt **perms = NULL; 570297e99dd9SToby Isaac const PetscScalar **flips = NULL; 57031a271a75SMatthew G. Knepley 57049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 570597e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 570697e99dd9SToby Isaac const PetscInt point = points[2*p]; 570797e99dd9SToby Isaac PetscInt fdof, foff, b; 57081a271a75SMatthew G. Knepley const PetscScalar *varr; 570997e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 571097e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 57111a271a75SMatthew G. Knepley 57129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 57139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(section, point, f, &foff)); 57141a271a75SMatthew G. Knepley varr = &vArray[foff]; 571597e99dd9SToby Isaac if (clperm) { 571697e99dd9SToby Isaac if (perm) {for (b = 0; b < fdof; b++) {array[clperm[offset + perm[b]]] = varr[b];}} 571797e99dd9SToby Isaac else {for (b = 0; b < fdof; b++) {array[clperm[offset + b ]] = varr[b];}} 571897e99dd9SToby Isaac if (flip) {for (b = 0; b < fdof; b++) {array[clperm[offset + b ]] *= flip[b];}} 57191a271a75SMatthew G. Knepley } else { 572097e99dd9SToby Isaac if (perm) {for (b = 0; b < fdof; b++) {array[offset + perm[b]] = varr[b];}} 572197e99dd9SToby Isaac else {for (b = 0; b < fdof; b++) {array[offset + b ] = varr[b];}} 572297e99dd9SToby Isaac if (flip) {for (b = 0; b < fdof; b++) {array[offset + b ] *= flip[b];}} 57231a271a75SMatthew G. Knepley } 572497e99dd9SToby Isaac offset += fdof; 57251a271a75SMatthew G. Knepley } 57269566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 57271a271a75SMatthew G. Knepley } 57281a271a75SMatthew G. Knepley *size = offset; 57291a271a75SMatthew G. Knepley PetscFunctionReturn(0); 57301a271a75SMatthew G. Knepley } 57311a271a75SMatthew G. Knepley 5732552f7358SJed Brown /*@C 5733552f7358SJed Brown DMPlexVecGetClosure - Get an array of the values on the closure of 'point' 5734552f7358SJed Brown 5735552f7358SJed Brown Not collective 5736552f7358SJed Brown 5737552f7358SJed Brown Input Parameters: 5738552f7358SJed Brown + dm - The DM 5739552f7358SJed Brown . section - The section describing the layout in v, or NULL to use the default section 5740552f7358SJed Brown . v - The local vector 57416b867d5aSJose E. Roman - point - The point in the DM 5742552f7358SJed Brown 57436b867d5aSJose E. Roman Input/Output Parameters: 57446b867d5aSJose E. Roman + csize - The size of the input values array, or NULL; on output the number of values in the closure 57456b867d5aSJose E. Roman - values - An array to use for the values, or NULL to have it allocated automatically; 57466b867d5aSJose E. Roman if the user provided NULL, it is a borrowed array and should not be freed 574722c1ee49SMatthew G. Knepley 574822c1ee49SMatthew G. Knepley $ Note that DMPlexVecGetClosure/DMPlexVecRestoreClosure only allocates the values array if it set to NULL in the 574922c1ee49SMatthew G. Knepley $ calling function. This is because DMPlexVecGetClosure() is typically called in the inner loop of a Vec or Mat 575022c1ee49SMatthew G. Knepley $ assembly function, and a user may already have allocated storage for this operation. 575122c1ee49SMatthew G. Knepley $ 575222c1ee49SMatthew G. Knepley $ A typical use could be 575322c1ee49SMatthew G. Knepley $ 575422c1ee49SMatthew G. Knepley $ values = NULL; 57559566063dSJacob Faibussowitsch $ PetscCall(DMPlexVecGetClosure(dm, NULL, v, p, &clSize, &values)); 575622c1ee49SMatthew G. Knepley $ for (cl = 0; cl < clSize; ++cl) { 575722c1ee49SMatthew G. Knepley $ <Compute on closure> 575822c1ee49SMatthew G. Knepley $ } 57599566063dSJacob Faibussowitsch $ PetscCall(DMPlexVecRestoreClosure(dm, NULL, v, p, &clSize, &values)); 576022c1ee49SMatthew G. Knepley $ 576122c1ee49SMatthew G. Knepley $ or 576222c1ee49SMatthew G. Knepley $ 576322c1ee49SMatthew G. Knepley $ PetscMalloc1(clMaxSize, &values); 576422c1ee49SMatthew G. Knepley $ for (p = pStart; p < pEnd; ++p) { 576522c1ee49SMatthew G. Knepley $ clSize = clMaxSize; 57669566063dSJacob Faibussowitsch $ PetscCall(DMPlexVecGetClosure(dm, NULL, v, p, &clSize, &values)); 576722c1ee49SMatthew G. Knepley $ for (cl = 0; cl < clSize; ++cl) { 576822c1ee49SMatthew G. Knepley $ <Compute on closure> 576922c1ee49SMatthew G. Knepley $ } 577022c1ee49SMatthew G. Knepley $ } 577122c1ee49SMatthew G. Knepley $ PetscFree(values); 5772552f7358SJed Brown 5773552f7358SJed Brown Fortran Notes: 5774552f7358SJed Brown Since it returns an array, this routine is only available in Fortran 90, and you must 5775552f7358SJed Brown include petsc.h90 in your code. 5776552f7358SJed Brown 5777552f7358SJed Brown The csize argument is not present in the Fortran 90 binding since it is internal to the array. 5778552f7358SJed Brown 5779552f7358SJed Brown Level: intermediate 5780552f7358SJed Brown 5781db781477SPatrick Sanan .seealso `DMPlexVecRestoreClosure()`, `DMPlexVecSetClosure()`, `DMPlexMatSetClosure()` 5782552f7358SJed Brown @*/ 5783552f7358SJed Brown PetscErrorCode DMPlexVecGetClosure(DM dm, PetscSection section, Vec v, PetscInt point, PetscInt *csize, PetscScalar *values[]) 5784552f7358SJed Brown { 5785552f7358SJed Brown PetscSection clSection; 5786d9917b9dSMatthew G. Knepley IS clPoints; 5787552f7358SJed Brown PetscInt *points = NULL; 5788c459fbc1SJed Brown const PetscInt *clp, *perm; 5789c459fbc1SJed Brown PetscInt depth, numFields, numPoints, asize; 5790552f7358SJed Brown 5791d9917b9dSMatthew G. Knepley PetscFunctionBeginHot; 5792552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57939566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 57941a271a75SMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 57951a271a75SMatthew G. Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 3); 57969566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 57979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 5798552f7358SJed Brown if (depth == 1 && numFields < 2) { 57999566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure_Depth1_Static(dm, section, v, point, csize, values)); 5800552f7358SJed Brown PetscFunctionReturn(0); 5801552f7358SJed Brown } 58021a271a75SMatthew G. Knepley /* Get points */ 58039566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5804c459fbc1SJed Brown /* Get sizes */ 5805c459fbc1SJed Brown asize = 0; 5806c459fbc1SJed Brown for (PetscInt p = 0; p < numPoints*2; p += 2) { 5807c459fbc1SJed Brown PetscInt dof; 58089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[p], &dof)); 58091a271a75SMatthew G. Knepley asize += dof; 5810552f7358SJed Brown } 5811c459fbc1SJed Brown if (values) { 5812c459fbc1SJed Brown const PetscScalar *vArray; 5813c459fbc1SJed Brown PetscInt size; 5814c459fbc1SJed Brown 5815c459fbc1SJed Brown if (*values) { 581663a3b9bcSJacob Faibussowitsch PetscCheck(*csize >= asize,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided array size %" PetscInt_FMT " not sufficient to hold closure size %" PetscInt_FMT, *csize, asize); 58179566063dSJacob Faibussowitsch } else PetscCall(DMGetWorkArray(dm, asize, MPIU_SCALAR, values)); 58189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, (PetscObject) dm, depth, asize, &perm)); 58199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(v, &vArray)); 58201a271a75SMatthew G. Knepley /* Get values */ 58219566063dSJacob Faibussowitsch if (numFields > 0) PetscCall(DMPlexVecGetClosure_Fields_Static(dm, section, numPoints, points, numFields, perm, vArray, &size, *values)); 58229566063dSJacob Faibussowitsch else PetscCall(DMPlexVecGetClosure_Static(dm, section, numPoints, points, perm, vArray, &size, *values)); 582363a3b9bcSJacob Faibussowitsch PetscCheck(asize == size,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Section size %" PetscInt_FMT " does not match Vec closure size %" PetscInt_FMT, asize, size); 58241a271a75SMatthew G. Knepley /* Cleanup array */ 58259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(v, &vArray)); 5826d0f6b257SMatthew G. Knepley } 5827c459fbc1SJed Brown if (csize) *csize = asize; 5828c459fbc1SJed Brown /* Cleanup points */ 58299566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5830552f7358SJed Brown PetscFunctionReturn(0); 5831552f7358SJed Brown } 5832552f7358SJed Brown 5833e5c487bfSMatthew G. Knepley PetscErrorCode DMPlexVecGetClosureAtDepth_Internal(DM dm, PetscSection section, Vec v, PetscInt point, PetscInt depth, PetscInt *csize, PetscScalar *values[]) 5834e5c487bfSMatthew G. Knepley { 5835e5c487bfSMatthew G. Knepley DMLabel depthLabel; 5836e5c487bfSMatthew G. Knepley PetscSection clSection; 5837e5c487bfSMatthew G. Knepley IS clPoints; 5838e5c487bfSMatthew G. Knepley PetscScalar *array; 5839e5c487bfSMatthew G. Knepley const PetscScalar *vArray; 5840e5c487bfSMatthew G. Knepley PetscInt *points = NULL; 5841c459fbc1SJed Brown const PetscInt *clp, *perm = NULL; 5842c459fbc1SJed Brown PetscInt mdepth, numFields, numPoints, Np = 0, p, clsize, size; 5843e5c487bfSMatthew G. Knepley 5844e5c487bfSMatthew G. Knepley PetscFunctionBeginHot; 5845e5c487bfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58469566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 5847e5c487bfSMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 5848e5c487bfSMatthew G. Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 3); 58499566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &mdepth)); 58509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 58519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 5852e5c487bfSMatthew G. Knepley if (mdepth == 1 && numFields < 2) { 58539566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure_Depth1_Static(dm, section, v, point, csize, values)); 5854e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 5855e5c487bfSMatthew G. Knepley } 5856e5c487bfSMatthew G. Knepley /* Get points */ 58579566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5858c459fbc1SJed Brown for (clsize=0,p=0; p<Np; p++) { 5859c459fbc1SJed Brown PetscInt dof; 58609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[2*p], &dof)); 5861c459fbc1SJed Brown clsize += dof; 5862c459fbc1SJed Brown } 58639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, (PetscObject) dm, depth, clsize, &perm)); 5864e5c487bfSMatthew G. Knepley /* Filter points */ 5865e5c487bfSMatthew G. Knepley for (p = 0; p < numPoints*2; p += 2) { 5866e5c487bfSMatthew G. Knepley PetscInt dep; 5867e5c487bfSMatthew G. Knepley 58689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, points[p], &dep)); 5869e5c487bfSMatthew G. Knepley if (dep != depth) continue; 5870e5c487bfSMatthew G. Knepley points[Np*2+0] = points[p]; 5871e5c487bfSMatthew G. Knepley points[Np*2+1] = points[p+1]; 5872e5c487bfSMatthew G. Knepley ++Np; 5873e5c487bfSMatthew G. Knepley } 5874e5c487bfSMatthew G. Knepley /* Get array */ 5875e5c487bfSMatthew G. Knepley if (!values || !*values) { 5876e5c487bfSMatthew G. Knepley PetscInt asize = 0, dof; 5877e5c487bfSMatthew G. Knepley 5878e5c487bfSMatthew G. Knepley for (p = 0; p < Np*2; p += 2) { 58799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[p], &dof)); 5880e5c487bfSMatthew G. Knepley asize += dof; 5881e5c487bfSMatthew G. Knepley } 5882e5c487bfSMatthew G. Knepley if (!values) { 58839566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5884e5c487bfSMatthew G. Knepley if (csize) *csize = asize; 5885e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 5886e5c487bfSMatthew G. Knepley } 58879566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, asize, MPIU_SCALAR, &array)); 5888e5c487bfSMatthew G. Knepley } else { 5889e5c487bfSMatthew G. Knepley array = *values; 5890e5c487bfSMatthew G. Knepley } 58919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(v, &vArray)); 5892e5c487bfSMatthew G. Knepley /* Get values */ 58939566063dSJacob Faibussowitsch if (numFields > 0) PetscCall(DMPlexVecGetClosure_Fields_Static(dm, section, Np, points, numFields, perm, vArray, &size, array)); 58949566063dSJacob Faibussowitsch else PetscCall(DMPlexVecGetClosure_Static(dm, section, Np, points, perm, vArray, &size, array)); 5895e5c487bfSMatthew G. Knepley /* Cleanup points */ 58969566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 5897e5c487bfSMatthew G. Knepley /* Cleanup array */ 58989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(v, &vArray)); 5899e5c487bfSMatthew G. Knepley if (!*values) { 5900e5c487bfSMatthew G. Knepley if (csize) *csize = size; 5901e5c487bfSMatthew G. Knepley *values = array; 5902e5c487bfSMatthew G. Knepley } else { 590363a3b9bcSJacob Faibussowitsch PetscCheck(size <= *csize,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Size of input array %" PetscInt_FMT " < actual size %" PetscInt_FMT, *csize, size); 5904e5c487bfSMatthew G. Knepley *csize = size; 5905e5c487bfSMatthew G. Knepley } 5906e5c487bfSMatthew G. Knepley PetscFunctionReturn(0); 5907e5c487bfSMatthew G. Knepley } 5908e5c487bfSMatthew G. Knepley 5909552f7358SJed Brown /*@C 5910552f7358SJed Brown DMPlexVecRestoreClosure - Restore the array of the values on the closure of 'point' 5911552f7358SJed Brown 5912552f7358SJed Brown Not collective 5913552f7358SJed Brown 5914552f7358SJed Brown Input Parameters: 5915552f7358SJed Brown + dm - The DM 59160298fd71SBarry Smith . section - The section describing the layout in v, or NULL to use the default section 5917552f7358SJed Brown . v - The local vector 5918eaf898f9SPatrick Sanan . point - The point in the DM 59190298fd71SBarry Smith . csize - The number of values in the closure, or NULL 5920552f7358SJed Brown - values - The array of values, which is a borrowed array and should not be freed 5921552f7358SJed Brown 592222c1ee49SMatthew G. Knepley Note that the array values are discarded and not copied back into v. In order to copy values back to v, use DMPlexVecSetClosure() 592322c1ee49SMatthew G. Knepley 59243813dfbdSMatthew G Knepley Fortran Notes: 59253813dfbdSMatthew G Knepley Since it returns an array, this routine is only available in Fortran 90, and you must 59263813dfbdSMatthew G Knepley include petsc.h90 in your code. 59273813dfbdSMatthew G Knepley 59283813dfbdSMatthew G Knepley The csize argument is not present in the Fortran 90 binding since it is internal to the array. 59293813dfbdSMatthew G Knepley 5930552f7358SJed Brown Level: intermediate 5931552f7358SJed Brown 5932db781477SPatrick Sanan .seealso `DMPlexVecGetClosure()`, `DMPlexVecSetClosure()`, `DMPlexMatSetClosure()` 5933552f7358SJed Brown @*/ 59347c1f9639SMatthew G Knepley PetscErrorCode DMPlexVecRestoreClosure(DM dm, PetscSection section, Vec v, PetscInt point, PetscInt *csize, PetscScalar *values[]) 5935a6dfd86eSKarl Rupp { 5936552f7358SJed Brown PetscInt size = 0; 5937552f7358SJed Brown 5938552f7358SJed Brown PetscFunctionBegin; 5939552f7358SJed Brown /* Should work without recalculating size */ 59409566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, size, MPIU_SCALAR, (void*) values)); 5941c9fdaa05SMatthew G. Knepley *values = NULL; 5942552f7358SJed Brown PetscFunctionReturn(0); 5943552f7358SJed Brown } 5944552f7358SJed Brown 59459fbee547SJacob Faibussowitsch static inline void add (PetscScalar *x, PetscScalar y) {*x += y;} 59469fbee547SJacob Faibussowitsch static inline void insert(PetscScalar *x, PetscScalar y) {*x = y;} 5947552f7358SJed Brown 59489fbee547SJacob Faibussowitsch static inline PetscErrorCode updatePoint_private(PetscSection section, PetscInt point, PetscInt dof, void (*fuse)(PetscScalar*, PetscScalar), PetscBool setBC, const PetscInt perm[], const PetscScalar flip[], const PetscInt clperm[], const PetscScalar values[], PetscInt offset, PetscScalar array[]) 5949552f7358SJed Brown { 5950552f7358SJed Brown PetscInt cdof; /* The number of constraints on this point */ 5951552f7358SJed Brown const PetscInt *cdofs; /* The indices of the constrained dofs on this point */ 5952552f7358SJed Brown PetscScalar *a; 5953552f7358SJed Brown PetscInt off, cind = 0, k; 5954552f7358SJed Brown 5955552f7358SJed Brown PetscFunctionBegin; 59569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, point, &cdof)); 59579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, point, &off)); 5958552f7358SJed Brown a = &array[off]; 5959552f7358SJed Brown if (!cdof || setBC) { 596097e99dd9SToby Isaac if (clperm) { 596197e99dd9SToby Isaac if (perm) {for (k = 0; k < dof; ++k) {fuse(&a[k], values[clperm[offset+perm[k]]] * (flip ? flip[perm[k]] : 1.));}} 596297e99dd9SToby Isaac else {for (k = 0; k < dof; ++k) {fuse(&a[k], values[clperm[offset+ k ]] * (flip ? flip[ k ] : 1.));}} 5963552f7358SJed Brown } else { 596497e99dd9SToby Isaac if (perm) {for (k = 0; k < dof; ++k) {fuse(&a[k], values[offset+perm[k]] * (flip ? flip[perm[k]] : 1.));}} 596597e99dd9SToby Isaac else {for (k = 0; k < dof; ++k) {fuse(&a[k], values[offset+ k ] * (flip ? flip[ k ] : 1.));}} 5966552f7358SJed Brown } 5967552f7358SJed Brown } else { 59689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, point, &cdofs)); 596997e99dd9SToby Isaac if (clperm) { 597097e99dd9SToby Isaac if (perm) {for (k = 0; k < dof; ++k) { 5971552f7358SJed Brown if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 597297e99dd9SToby Isaac fuse(&a[k], values[clperm[offset+perm[k]]] * (flip ? flip[perm[k]] : 1.)); 5973552f7358SJed Brown } 5974552f7358SJed Brown } else { 5975552f7358SJed Brown for (k = 0; k < dof; ++k) { 5976552f7358SJed Brown if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 597797e99dd9SToby Isaac fuse(&a[k], values[clperm[offset+ k ]] * (flip ? flip[ k ] : 1.)); 597897e99dd9SToby Isaac } 597997e99dd9SToby Isaac } 598097e99dd9SToby Isaac } else { 598197e99dd9SToby Isaac if (perm) { 598297e99dd9SToby Isaac for (k = 0; k < dof; ++k) { 598397e99dd9SToby Isaac if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 598497e99dd9SToby Isaac fuse(&a[k], values[offset+perm[k]] * (flip ? flip[perm[k]] : 1.)); 598597e99dd9SToby Isaac } 598697e99dd9SToby Isaac } else { 598797e99dd9SToby Isaac for (k = 0; k < dof; ++k) { 598897e99dd9SToby Isaac if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 598997e99dd9SToby Isaac fuse(&a[k], values[offset+ k ] * (flip ? flip[ k ] : 1.)); 599097e99dd9SToby Isaac } 5991552f7358SJed Brown } 5992552f7358SJed Brown } 5993552f7358SJed Brown } 5994552f7358SJed Brown PetscFunctionReturn(0); 5995552f7358SJed Brown } 5996552f7358SJed Brown 59979fbee547SJacob Faibussowitsch static inline PetscErrorCode updatePointBC_private(PetscSection section, PetscInt point, PetscInt dof, void (*fuse)(PetscScalar*, PetscScalar), const PetscInt perm[], const PetscScalar flip[], const PetscInt clperm[], const PetscScalar values[], PetscInt offset, PetscScalar array[]) 5998a5e93ea8SMatthew G. Knepley { 5999a5e93ea8SMatthew G. Knepley PetscInt cdof; /* The number of constraints on this point */ 6000a5e93ea8SMatthew G. Knepley const PetscInt *cdofs; /* The indices of the constrained dofs on this point */ 6001a5e93ea8SMatthew G. Knepley PetscScalar *a; 6002a5e93ea8SMatthew G. Knepley PetscInt off, cind = 0, k; 6003a5e93ea8SMatthew G. Knepley 6004a5e93ea8SMatthew G. Knepley PetscFunctionBegin; 60059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, point, &cdof)); 60069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, point, &off)); 6007a5e93ea8SMatthew G. Knepley a = &array[off]; 6008a5e93ea8SMatthew G. Knepley if (cdof) { 60099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, point, &cdofs)); 601097e99dd9SToby Isaac if (clperm) { 601197e99dd9SToby Isaac if (perm) { 6012a5e93ea8SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6013a5e93ea8SMatthew G. Knepley if ((cind < cdof) && (k == cdofs[cind])) { 601497e99dd9SToby Isaac fuse(&a[k], values[clperm[offset+perm[k]]] * (flip ? flip[perm[k]] : 1.)); 601597e99dd9SToby Isaac cind++; 6016a5e93ea8SMatthew G. Knepley } 6017a5e93ea8SMatthew G. Knepley } 6018a5e93ea8SMatthew G. Knepley } else { 6019a5e93ea8SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6020a5e93ea8SMatthew G. Knepley if ((cind < cdof) && (k == cdofs[cind])) { 602197e99dd9SToby Isaac fuse(&a[k], values[clperm[offset+ k ]] * (flip ? flip[ k ] : 1.)); 602297e99dd9SToby Isaac cind++; 602397e99dd9SToby Isaac } 602497e99dd9SToby Isaac } 602597e99dd9SToby Isaac } 602697e99dd9SToby Isaac } else { 602797e99dd9SToby Isaac if (perm) { 602897e99dd9SToby Isaac for (k = 0; k < dof; ++k) { 602997e99dd9SToby Isaac if ((cind < cdof) && (k == cdofs[cind])) { 603097e99dd9SToby Isaac fuse(&a[k], values[offset+perm[k]] * (flip ? flip[perm[k]] : 1.)); 603197e99dd9SToby Isaac cind++; 603297e99dd9SToby Isaac } 603397e99dd9SToby Isaac } 603497e99dd9SToby Isaac } else { 603597e99dd9SToby Isaac for (k = 0; k < dof; ++k) { 603697e99dd9SToby Isaac if ((cind < cdof) && (k == cdofs[cind])) { 603797e99dd9SToby Isaac fuse(&a[k], values[offset+ k ] * (flip ? flip[ k ] : 1.)); 603897e99dd9SToby Isaac cind++; 603997e99dd9SToby Isaac } 6040a5e93ea8SMatthew G. Knepley } 6041a5e93ea8SMatthew G. Knepley } 6042a5e93ea8SMatthew G. Knepley } 6043a5e93ea8SMatthew G. Knepley } 6044a5e93ea8SMatthew G. Knepley PetscFunctionReturn(0); 6045a5e93ea8SMatthew G. Knepley } 6046a5e93ea8SMatthew G. Knepley 60479fbee547SJacob Faibussowitsch static inline PetscErrorCode updatePointFields_private(PetscSection section, PetscInt point, const PetscInt *perm, const PetscScalar *flip, PetscInt f, void (*fuse)(PetscScalar*, PetscScalar), PetscBool setBC, const PetscInt clperm[], const PetscScalar values[], PetscInt *offset, PetscScalar array[]) 6048a6dfd86eSKarl Rupp { 6049552f7358SJed Brown PetscScalar *a; 60501a271a75SMatthew G. Knepley PetscInt fdof, foff, fcdof, foffset = *offset; 60511a271a75SMatthew G. Knepley const PetscInt *fcdofs; /* The indices of the constrained dofs for field f on this point */ 605297e99dd9SToby Isaac PetscInt cind = 0, b; 6053552f7358SJed Brown 6054552f7358SJed Brown PetscFunctionBegin; 60559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 60569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, point, f, &fcdof)); 60579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(section, point, f, &foff)); 60581a271a75SMatthew G. Knepley a = &array[foff]; 6059552f7358SJed Brown if (!fcdof || setBC) { 606097e99dd9SToby Isaac if (clperm) { 606197e99dd9SToby Isaac if (perm) {for (b = 0; b < fdof; b++) {fuse(&a[b], values[clperm[foffset+perm[b]]] * (flip ? flip[perm[b]] : 1.));}} 606297e99dd9SToby Isaac else {for (b = 0; b < fdof; b++) {fuse(&a[b], values[clperm[foffset+ b ]] * (flip ? flip[ b ] : 1.));}} 6063552f7358SJed Brown } else { 606497e99dd9SToby Isaac if (perm) {for (b = 0; b < fdof; b++) {fuse(&a[b], values[foffset+perm[b]] * (flip ? flip[perm[b]] : 1.));}} 606597e99dd9SToby Isaac else {for (b = 0; b < fdof; b++) {fuse(&a[b], values[foffset+ b ] * (flip ? flip[ b ] : 1.));}} 6066552f7358SJed Brown } 6067552f7358SJed Brown } else { 60689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(section, point, f, &fcdofs)); 606997e99dd9SToby Isaac if (clperm) { 607097e99dd9SToby Isaac if (perm) { 607197e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 607297e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; continue;} 607397e99dd9SToby Isaac fuse(&a[b], values[clperm[foffset+perm[b]]] * (flip ? flip[perm[b]] : 1.)); 6074552f7358SJed Brown } 6075552f7358SJed Brown } else { 607697e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 607797e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; continue;} 607897e99dd9SToby Isaac fuse(&a[b], values[clperm[foffset+ b ]] * (flip ? flip[ b ] : 1.)); 607997e99dd9SToby Isaac } 608097e99dd9SToby Isaac } 608197e99dd9SToby Isaac } else { 608297e99dd9SToby Isaac if (perm) { 608397e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 608497e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; continue;} 608597e99dd9SToby Isaac fuse(&a[b], values[foffset+perm[b]] * (flip ? flip[perm[b]] : 1.)); 608697e99dd9SToby Isaac } 608797e99dd9SToby Isaac } else { 608897e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 608997e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; continue;} 609097e99dd9SToby Isaac fuse(&a[b], values[foffset+ b ] * (flip ? flip[ b ] : 1.)); 6091552f7358SJed Brown } 6092552f7358SJed Brown } 6093552f7358SJed Brown } 6094552f7358SJed Brown } 60951a271a75SMatthew G. Knepley *offset += fdof; 6096552f7358SJed Brown PetscFunctionReturn(0); 6097552f7358SJed Brown } 6098552f7358SJed Brown 60999fbee547SJacob Faibussowitsch static inline PetscErrorCode updatePointFieldsBC_private(PetscSection section, PetscInt point, const PetscInt perm[], const PetscScalar flip[], PetscInt f, PetscInt Ncc, const PetscInt comps[], void (*fuse)(PetscScalar*, PetscScalar), const PetscInt clperm[], const PetscScalar values[], PetscInt *offset, PetscScalar array[]) 6100a5e93ea8SMatthew G. Knepley { 6101a5e93ea8SMatthew G. Knepley PetscScalar *a; 61021a271a75SMatthew G. Knepley PetscInt fdof, foff, fcdof, foffset = *offset; 61031a271a75SMatthew G. Knepley const PetscInt *fcdofs; /* The indices of the constrained dofs for field f on this point */ 61045da9d227SMatthew G. Knepley PetscInt Nc, cind = 0, ncind = 0, b; 6105ba322698SMatthew G. Knepley PetscBool ncSet, fcSet; 6106a5e93ea8SMatthew G. Knepley 6107a5e93ea8SMatthew G. Knepley PetscFunctionBegin; 61089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &Nc)); 61099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 61109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, point, f, &fcdof)); 61119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(section, point, f, &foff)); 61121a271a75SMatthew G. Knepley a = &array[foff]; 6113a5e93ea8SMatthew G. Knepley if (fcdof) { 6114ba322698SMatthew G. Knepley /* We just override fcdof and fcdofs with Ncc and comps */ 61159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(section, point, f, &fcdofs)); 611697e99dd9SToby Isaac if (clperm) { 611797e99dd9SToby Isaac if (perm) { 6118ba322698SMatthew G. Knepley if (comps) { 6119ba322698SMatthew G. Knepley for (b = 0; b < fdof; b++) { 6120ba322698SMatthew G. Knepley ncSet = fcSet = PETSC_FALSE; 61215da9d227SMatthew G. Knepley if (b%Nc == comps[ncind]) {ncind = (ncind+1)%Ncc; ncSet = PETSC_TRUE;} 6122ba322698SMatthew G. Knepley if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; fcSet = PETSC_TRUE;} 6123ba322698SMatthew G. Knepley if (ncSet && fcSet) {fuse(&a[b], values[clperm[foffset+perm[b]]] * (flip ? flip[perm[b]] : 1.));} 6124ba322698SMatthew G. Knepley } 6125ba322698SMatthew G. Knepley } else { 612697e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 612797e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) { 612897e99dd9SToby Isaac fuse(&a[b], values[clperm[foffset+perm[b]]] * (flip ? flip[perm[b]] : 1.)); 6129a5e93ea8SMatthew G. Knepley ++cind; 6130a5e93ea8SMatthew G. Knepley } 6131a5e93ea8SMatthew G. Knepley } 6132ba322698SMatthew G. Knepley } 6133ba322698SMatthew G. Knepley } else { 6134ba322698SMatthew G. Knepley if (comps) { 6135ba322698SMatthew G. Knepley for (b = 0; b < fdof; b++) { 6136ba322698SMatthew G. Knepley ncSet = fcSet = PETSC_FALSE; 61375da9d227SMatthew G. Knepley if (b%Nc == comps[ncind]) {ncind = (ncind+1)%Ncc; ncSet = PETSC_TRUE;} 6138ba322698SMatthew G. Knepley if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; fcSet = PETSC_TRUE;} 6139ba322698SMatthew G. Knepley if (ncSet && fcSet) {fuse(&a[b], values[clperm[foffset+ b ]] * (flip ? flip[ b ] : 1.));} 6140ba322698SMatthew G. Knepley } 6141a5e93ea8SMatthew G. Knepley } else { 614297e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 614397e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) { 614497e99dd9SToby Isaac fuse(&a[b], values[clperm[foffset+ b ]] * (flip ? flip[ b ] : 1.)); 614597e99dd9SToby Isaac ++cind; 614697e99dd9SToby Isaac } 614797e99dd9SToby Isaac } 614897e99dd9SToby Isaac } 6149ba322698SMatthew G. Knepley } 615097e99dd9SToby Isaac } else { 615197e99dd9SToby Isaac if (perm) { 6152ba322698SMatthew G. Knepley if (comps) { 6153ba322698SMatthew G. Knepley for (b = 0; b < fdof; b++) { 6154ba322698SMatthew G. Knepley ncSet = fcSet = PETSC_FALSE; 61555da9d227SMatthew G. Knepley if (b%Nc == comps[ncind]) {ncind = (ncind+1)%Ncc; ncSet = PETSC_TRUE;} 6156ba322698SMatthew G. Knepley if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; fcSet = PETSC_TRUE;} 6157ba322698SMatthew G. Knepley if (ncSet && fcSet) {fuse(&a[b], values[foffset+perm[b]] * (flip ? flip[perm[b]] : 1.));} 6158ba322698SMatthew G. Knepley } 6159ba322698SMatthew G. Knepley } else { 616097e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 616197e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) { 616297e99dd9SToby Isaac fuse(&a[b], values[foffset+perm[b]] * (flip ? flip[perm[b]] : 1.)); 616397e99dd9SToby Isaac ++cind; 616497e99dd9SToby Isaac } 616597e99dd9SToby Isaac } 6166ba322698SMatthew G. Knepley } 6167ba322698SMatthew G. Knepley } else { 6168ba322698SMatthew G. Knepley if (comps) { 6169ba322698SMatthew G. Knepley for (b = 0; b < fdof; b++) { 6170ba322698SMatthew G. Knepley ncSet = fcSet = PETSC_FALSE; 61715da9d227SMatthew G. Knepley if (b%Nc == comps[ncind]) {ncind = (ncind+1)%Ncc; ncSet = PETSC_TRUE;} 6172ba322698SMatthew G. Knepley if ((cind < fcdof) && (b == fcdofs[cind])) {++cind; fcSet = PETSC_TRUE;} 6173ba322698SMatthew G. Knepley if (ncSet && fcSet) {fuse(&a[b], values[foffset+ b ] * (flip ? flip[ b ] : 1.));} 6174ba322698SMatthew G. Knepley } 617597e99dd9SToby Isaac } else { 617697e99dd9SToby Isaac for (b = 0; b < fdof; b++) { 617797e99dd9SToby Isaac if ((cind < fcdof) && (b == fcdofs[cind])) { 617897e99dd9SToby Isaac fuse(&a[b], values[foffset+ b ] * (flip ? flip[ b ] : 1.)); 6179a5e93ea8SMatthew G. Knepley ++cind; 6180a5e93ea8SMatthew G. Knepley } 6181a5e93ea8SMatthew G. Knepley } 6182a5e93ea8SMatthew G. Knepley } 6183a5e93ea8SMatthew G. Knepley } 6184a5e93ea8SMatthew G. Knepley } 6185ba322698SMatthew G. Knepley } 61861a271a75SMatthew G. Knepley *offset += fdof; 6187a5e93ea8SMatthew G. Knepley PetscFunctionReturn(0); 6188a5e93ea8SMatthew G. Knepley } 6189a5e93ea8SMatthew G. Knepley 61909fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexVecSetClosure_Depth1_Static(DM dm, PetscSection section, Vec v, PetscInt point, const PetscScalar values[], InsertMode mode) 6191a6dfd86eSKarl Rupp { 6192552f7358SJed Brown PetscScalar *array; 61931b406b76SMatthew G. Knepley const PetscInt *cone, *coneO; 61941b406b76SMatthew G. Knepley PetscInt pStart, pEnd, p, numPoints, off, dof; 6195552f7358SJed Brown 61961b406b76SMatthew G. Knepley PetscFunctionBeginHot; 61979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 61989566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &numPoints)); 61999566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 62009566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &coneO)); 62019566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &array)); 6202b6ebb6e6SMatthew G. Knepley for (p = 0, off = 0; p <= numPoints; ++p, off += dof) { 6203b6ebb6e6SMatthew G. Knepley const PetscInt cp = !p ? point : cone[p-1]; 6204b6ebb6e6SMatthew G. Knepley const PetscInt o = !p ? 0 : coneO[p-1]; 6205b6ebb6e6SMatthew G. Knepley 6206b6ebb6e6SMatthew G. Knepley if ((cp < pStart) || (cp >= pEnd)) {dof = 0; continue;} 62079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, cp, &dof)); 6208b6ebb6e6SMatthew G. Knepley /* ADD_VALUES */ 6209b6ebb6e6SMatthew G. Knepley { 6210b6ebb6e6SMatthew G. Knepley const PetscInt *cdofs; /* The indices of the constrained dofs on this point */ 6211b6ebb6e6SMatthew G. Knepley PetscScalar *a; 6212b6ebb6e6SMatthew G. Knepley PetscInt cdof, coff, cind = 0, k; 6213b6ebb6e6SMatthew G. Knepley 62149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, cp, &cdof)); 62159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, cp, &coff)); 6216b6ebb6e6SMatthew G. Knepley a = &array[coff]; 6217b6ebb6e6SMatthew G. Knepley if (!cdof) { 6218b6ebb6e6SMatthew G. Knepley if (o >= 0) { 6219b6ebb6e6SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6220b6ebb6e6SMatthew G. Knepley a[k] += values[off+k]; 6221b6ebb6e6SMatthew G. Knepley } 6222b6ebb6e6SMatthew G. Knepley } else { 6223b6ebb6e6SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6224b6ebb6e6SMatthew G. Knepley a[k] += values[off+dof-k-1]; 6225b6ebb6e6SMatthew G. Knepley } 6226b6ebb6e6SMatthew G. Knepley } 6227b6ebb6e6SMatthew G. Knepley } else { 62289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, cp, &cdofs)); 6229b6ebb6e6SMatthew G. Knepley if (o >= 0) { 6230b6ebb6e6SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6231b6ebb6e6SMatthew G. Knepley if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 6232b6ebb6e6SMatthew G. Knepley a[k] += values[off+k]; 6233b6ebb6e6SMatthew G. Knepley } 6234b6ebb6e6SMatthew G. Knepley } else { 6235b6ebb6e6SMatthew G. Knepley for (k = 0; k < dof; ++k) { 6236b6ebb6e6SMatthew G. Knepley if ((cind < cdof) && (k == cdofs[cind])) {++cind; continue;} 6237b6ebb6e6SMatthew G. Knepley a[k] += values[off+dof-k-1]; 6238b6ebb6e6SMatthew G. Knepley } 6239b6ebb6e6SMatthew G. Knepley } 6240b6ebb6e6SMatthew G. Knepley } 6241b6ebb6e6SMatthew G. Knepley } 6242b6ebb6e6SMatthew G. Knepley } 62439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &array)); 6244b6ebb6e6SMatthew G. Knepley PetscFunctionReturn(0); 6245b6ebb6e6SMatthew G. Knepley } 62461b406b76SMatthew G. Knepley 62471b406b76SMatthew G. Knepley /*@C 62481b406b76SMatthew G. Knepley DMPlexVecSetClosure - Set an array of the values on the closure of 'point' 62491b406b76SMatthew G. Knepley 62501b406b76SMatthew G. Knepley Not collective 62511b406b76SMatthew G. Knepley 62521b406b76SMatthew G. Knepley Input Parameters: 62531b406b76SMatthew G. Knepley + dm - The DM 62541b406b76SMatthew G. Knepley . section - The section describing the layout in v, or NULL to use the default section 62551b406b76SMatthew G. Knepley . v - The local vector 6256eaf898f9SPatrick Sanan . point - The point in the DM 62571b406b76SMatthew G. Knepley . values - The array of values 625822c1ee49SMatthew G. Knepley - mode - The insert mode. One of INSERT_ALL_VALUES, ADD_ALL_VALUES, INSERT_VALUES, ADD_VALUES, INSERT_BC_VALUES, and ADD_BC_VALUES, 625922c1ee49SMatthew G. Knepley where INSERT_ALL_VALUES and ADD_ALL_VALUES also overwrite boundary conditions. 62601b406b76SMatthew G. Knepley 62611b406b76SMatthew G. Knepley Fortran Notes: 62621b406b76SMatthew G. Knepley This routine is only available in Fortran 90, and you must include petsc.h90 in your code. 62631b406b76SMatthew G. Knepley 62641b406b76SMatthew G. Knepley Level: intermediate 62651b406b76SMatthew G. Knepley 6266db781477SPatrick Sanan .seealso `DMPlexVecGetClosure()`, `DMPlexMatSetClosure()` 62671b406b76SMatthew G. Knepley @*/ 62681b406b76SMatthew G. Knepley PetscErrorCode DMPlexVecSetClosure(DM dm, PetscSection section, Vec v, PetscInt point, const PetscScalar values[], InsertMode mode) 62691b406b76SMatthew G. Knepley { 62701b406b76SMatthew G. Knepley PetscSection clSection; 62711b406b76SMatthew G. Knepley IS clPoints; 62721b406b76SMatthew G. Knepley PetscScalar *array; 62731b406b76SMatthew G. Knepley PetscInt *points = NULL; 627427f02ce8SMatthew G. Knepley const PetscInt *clp, *clperm = NULL; 6275c459fbc1SJed Brown PetscInt depth, numFields, numPoints, p, clsize; 62761b406b76SMatthew G. Knepley 62771a271a75SMatthew G. Knepley PetscFunctionBeginHot; 62781b406b76SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62799566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 62801a271a75SMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 62811a271a75SMatthew G. Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 3); 62829566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 62839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 62841b406b76SMatthew G. Knepley if (depth == 1 && numFields < 2 && mode == ADD_VALUES) { 62859566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure_Depth1_Static(dm, section, v, point, values, mode)); 62861b406b76SMatthew G. Knepley PetscFunctionReturn(0); 62871b406b76SMatthew G. Knepley } 62881a271a75SMatthew G. Knepley /* Get points */ 62899566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 6290c459fbc1SJed Brown for (clsize=0,p=0; p<numPoints; p++) { 6291c459fbc1SJed Brown PetscInt dof; 62929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[2*p], &dof)); 6293c459fbc1SJed Brown clsize += dof; 6294c459fbc1SJed Brown } 62959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, (PetscObject) dm, depth, clsize, &clperm)); 62961a271a75SMatthew G. Knepley /* Get array */ 62979566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &array)); 62981a271a75SMatthew G. Knepley /* Get values */ 6299ef90cfe2SMatthew G. Knepley if (numFields > 0) { 630097e99dd9SToby Isaac PetscInt offset = 0, f; 6301552f7358SJed Brown for (f = 0; f < numFields; ++f) { 630297e99dd9SToby Isaac const PetscInt **perms = NULL; 630397e99dd9SToby Isaac const PetscScalar **flips = NULL; 630497e99dd9SToby Isaac 63059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 6306552f7358SJed Brown switch (mode) { 6307552f7358SJed Brown case INSERT_VALUES: 630897e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 630997e99dd9SToby Isaac const PetscInt point = points[2*p]; 631097e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 631197e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 631297e99dd9SToby Isaac updatePointFields_private(section, point, perm, flip, f, insert, PETSC_FALSE, clperm, values, &offset, array); 6313552f7358SJed Brown } break; 6314552f7358SJed Brown case INSERT_ALL_VALUES: 631597e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 631697e99dd9SToby Isaac const PetscInt point = points[2*p]; 631797e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 631897e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 631997e99dd9SToby Isaac updatePointFields_private(section, point, perm, flip, f, insert, PETSC_TRUE, clperm, values, &offset, array); 6320552f7358SJed Brown } break; 6321a5e93ea8SMatthew G. Knepley case INSERT_BC_VALUES: 632297e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 632397e99dd9SToby Isaac const PetscInt point = points[2*p]; 632497e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 632597e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 6326ba322698SMatthew G. Knepley updatePointFieldsBC_private(section, point, perm, flip, f, -1, NULL, insert, clperm, values, &offset, array); 6327a5e93ea8SMatthew G. Knepley } break; 6328552f7358SJed Brown case ADD_VALUES: 632997e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 633097e99dd9SToby Isaac const PetscInt point = points[2*p]; 633197e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 633297e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 633397e99dd9SToby Isaac updatePointFields_private(section, point, perm, flip, f, add, PETSC_FALSE, clperm, values, &offset, array); 6334552f7358SJed Brown } break; 6335552f7358SJed Brown case ADD_ALL_VALUES: 633697e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 633797e99dd9SToby Isaac const PetscInt point = points[2*p]; 633897e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 633997e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 634097e99dd9SToby Isaac updatePointFields_private(section, point, perm, flip, f, add, PETSC_TRUE, clperm, values, &offset, array); 6341552f7358SJed Brown } break; 6342304ab55fSMatthew G. Knepley case ADD_BC_VALUES: 634397e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 634497e99dd9SToby Isaac const PetscInt point = points[2*p]; 634597e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 634697e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 6347ba322698SMatthew G. Knepley updatePointFieldsBC_private(section, point, perm, flip, f, -1, NULL, add, clperm, values, &offset, array); 6348304ab55fSMatthew G. Knepley } break; 6349552f7358SJed Brown default: 635098921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insert mode %d", mode); 6351552f7358SJed Brown } 63529566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 63531a271a75SMatthew G. Knepley } 6354552f7358SJed Brown } else { 63551a271a75SMatthew G. Knepley PetscInt dof, off; 635697e99dd9SToby Isaac const PetscInt **perms = NULL; 635797e99dd9SToby Isaac const PetscScalar **flips = NULL; 63581a271a75SMatthew G. Knepley 63599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(section,numPoints,points,&perms,&flips)); 6360552f7358SJed Brown switch (mode) { 6361552f7358SJed Brown case INSERT_VALUES: 636297e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 636397e99dd9SToby Isaac const PetscInt point = points[2*p]; 636497e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 636597e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 636797e99dd9SToby Isaac updatePoint_private(section, point, dof, insert, PETSC_FALSE, perm, flip, clperm, values, off, array); 6368552f7358SJed Brown } break; 6369552f7358SJed Brown case INSERT_ALL_VALUES: 637097e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 637197e99dd9SToby Isaac const PetscInt point = points[2*p]; 637297e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 637397e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 637597e99dd9SToby Isaac updatePoint_private(section, point, dof, insert, PETSC_TRUE, perm, flip, clperm, values, off, array); 6376552f7358SJed Brown } break; 6377a5e93ea8SMatthew G. Knepley case INSERT_BC_VALUES: 637897e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 637997e99dd9SToby Isaac const PetscInt point = points[2*p]; 638097e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 638197e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 638397e99dd9SToby Isaac updatePointBC_private(section, point, dof, insert, perm, flip, clperm, values, off, array); 6384a5e93ea8SMatthew G. Knepley } break; 6385552f7358SJed Brown case ADD_VALUES: 638697e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 638797e99dd9SToby Isaac const PetscInt point = points[2*p]; 638897e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 638997e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 639197e99dd9SToby Isaac updatePoint_private(section, point, dof, add, PETSC_FALSE, perm, flip, clperm, values, off, array); 6392552f7358SJed Brown } break; 6393552f7358SJed Brown case ADD_ALL_VALUES: 639497e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 639597e99dd9SToby Isaac const PetscInt point = points[2*p]; 639697e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 639797e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 63989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 639997e99dd9SToby Isaac updatePoint_private(section, point, dof, add, PETSC_TRUE, perm, flip, clperm, values, off, array); 6400552f7358SJed Brown } break; 6401304ab55fSMatthew G. Knepley case ADD_BC_VALUES: 640297e99dd9SToby Isaac for (p = 0, off = 0; p < numPoints; p++, off += dof) { 640397e99dd9SToby Isaac const PetscInt point = points[2*p]; 640497e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 640597e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 64069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 640797e99dd9SToby Isaac updatePointBC_private(section, point, dof, add, perm, flip, clperm, values, off, array); 6408304ab55fSMatthew G. Knepley } break; 6409552f7358SJed Brown default: 641098921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insert mode %d", mode); 6411552f7358SJed Brown } 64129566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(section,numPoints,points,&perms,&flips)); 6413552f7358SJed Brown } 64141a271a75SMatthew G. Knepley /* Cleanup points */ 64159566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 64161a271a75SMatthew G. Knepley /* Cleanup array */ 64179566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &array)); 6418552f7358SJed Brown PetscFunctionReturn(0); 6419552f7358SJed Brown } 6420552f7358SJed Brown 64215f790a90SMatthew G. Knepley /* Check whether the given point is in the label. If not, update the offset to skip this point */ 64229fbee547SJacob Faibussowitsch static inline PetscErrorCode CheckPoint_Private(DMLabel label, PetscInt labelId, PetscSection section, PetscInt point, PetscInt f, PetscInt *offset) 64235f790a90SMatthew G. Knepley { 64245f790a90SMatthew G. Knepley PetscFunctionBegin; 64255f790a90SMatthew G. Knepley if (label) { 64265f790a90SMatthew G. Knepley PetscInt val, fdof; 64275f790a90SMatthew G. Knepley 64285f790a90SMatthew G. Knepley /* There is a problem with this: 64295f790a90SMatthew G. Knepley Suppose we have two label values, defining surfaces, interecting along a line in 3D. When we add cells to the label, the cells that 64305f790a90SMatthew G. Knepley touch both surfaces must pick a label value. Thus we miss setting values for the surface with that other value intersecting that cell. 64315f790a90SMatthew G. Knepley Thus I am only going to check val != -1, not val != labelId 64325f790a90SMatthew G. Knepley */ 64339566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 64345f790a90SMatthew G. Knepley if (val < 0) { 64359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 64365f790a90SMatthew G. Knepley *offset += fdof; 64375f790a90SMatthew G. Knepley PetscFunctionReturn(1); 64385f790a90SMatthew G. Knepley } 64395f790a90SMatthew G. Knepley } 64405f790a90SMatthew G. Knepley PetscFunctionReturn(0); 64415f790a90SMatthew G. Knepley } 64425f790a90SMatthew G. Knepley 644397529cf3SJed Brown /* Unlike DMPlexVecSetClosure(), this uses plex-native closure permutation, not a user-specified permutation such as DMPlexSetClosurePermutationTensor(). */ 64445f790a90SMatthew G. Knepley PetscErrorCode DMPlexVecSetFieldClosure_Internal(DM dm, PetscSection section, Vec v, PetscBool fieldActive[], PetscInt point, PetscInt Ncc, const PetscInt comps[], DMLabel label, PetscInt labelId, const PetscScalar values[], InsertMode mode) 6445e07394fbSMatthew G. Knepley { 6446e07394fbSMatthew G. Knepley PetscSection clSection; 6447e07394fbSMatthew G. Knepley IS clPoints; 6448e07394fbSMatthew G. Knepley PetscScalar *array; 6449e07394fbSMatthew G. Knepley PetscInt *points = NULL; 645097529cf3SJed Brown const PetscInt *clp; 6451e07394fbSMatthew G. Knepley PetscInt numFields, numPoints, p; 645297e99dd9SToby Isaac PetscInt offset = 0, f; 6453e07394fbSMatthew G. Knepley 6454e07394fbSMatthew G. Knepley PetscFunctionBeginHot; 6455e07394fbSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64569566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 6457e07394fbSMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 6458e07394fbSMatthew G. Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 3); 64599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 6460e07394fbSMatthew G. Knepley /* Get points */ 64619566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 6462e07394fbSMatthew G. Knepley /* Get array */ 64639566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &array)); 6464e07394fbSMatthew G. Knepley /* Get values */ 6465e07394fbSMatthew G. Knepley for (f = 0; f < numFields; ++f) { 646697e99dd9SToby Isaac const PetscInt **perms = NULL; 646797e99dd9SToby Isaac const PetscScalar **flips = NULL; 646897e99dd9SToby Isaac 6469e07394fbSMatthew G. Knepley if (!fieldActive[f]) { 6470e07394fbSMatthew G. Knepley for (p = 0; p < numPoints*2; p += 2) { 6471e07394fbSMatthew G. Knepley PetscInt fdof; 64729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, points[p], f, &fdof)); 6473e07394fbSMatthew G. Knepley offset += fdof; 6474e07394fbSMatthew G. Knepley } 6475e07394fbSMatthew G. Knepley continue; 6476e07394fbSMatthew G. Knepley } 64779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 6478e07394fbSMatthew G. Knepley switch (mode) { 6479e07394fbSMatthew G. Knepley case INSERT_VALUES: 648097e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 648197e99dd9SToby Isaac const PetscInt point = points[2*p]; 648297e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 648397e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 64845f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 64859566063dSJacob Faibussowitsch PetscCall(updatePointFields_private(section, point, perm, flip, f, insert, PETSC_FALSE, NULL, values, &offset, array)); 6486e07394fbSMatthew G. Knepley } break; 6487e07394fbSMatthew G. Knepley case INSERT_ALL_VALUES: 648897e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 648997e99dd9SToby Isaac const PetscInt point = points[2*p]; 649097e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 649197e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 64925f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 64939566063dSJacob Faibussowitsch PetscCall(updatePointFields_private(section, point, perm, flip, f, insert, PETSC_TRUE, NULL, values, &offset, array)); 6494e07394fbSMatthew G. Knepley } break; 6495e07394fbSMatthew G. Knepley case INSERT_BC_VALUES: 649697e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 649797e99dd9SToby Isaac const PetscInt point = points[2*p]; 649897e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 649997e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 65005f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 65019566063dSJacob Faibussowitsch PetscCall(updatePointFieldsBC_private(section, point, perm, flip, f, Ncc, comps, insert, NULL, values, &offset, array)); 6502e07394fbSMatthew G. Knepley } break; 6503e07394fbSMatthew G. Knepley case ADD_VALUES: 650497e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 650597e99dd9SToby Isaac const PetscInt point = points[2*p]; 650697e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 650797e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 65085f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 65099566063dSJacob Faibussowitsch PetscCall(updatePointFields_private(section, point, perm, flip, f, add, PETSC_FALSE, NULL, values, &offset, array)); 6510e07394fbSMatthew G. Knepley } break; 6511e07394fbSMatthew G. Knepley case ADD_ALL_VALUES: 651297e99dd9SToby Isaac for (p = 0; p < numPoints; p++) { 651397e99dd9SToby Isaac const PetscInt point = points[2*p]; 651497e99dd9SToby Isaac const PetscInt *perm = perms ? perms[p] : NULL; 651597e99dd9SToby Isaac const PetscScalar *flip = flips ? flips[p] : NULL; 65165f80ce2aSJacob Faibussowitsch if (CheckPoint_Private(label, labelId, section, point, f, &offset)) continue; 65179566063dSJacob Faibussowitsch PetscCall(updatePointFields_private(section, point, perm, flip, f, add, PETSC_TRUE, NULL, values, &offset, array)); 6518e07394fbSMatthew G. Knepley } break; 6519e07394fbSMatthew G. Knepley default: 652098921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insert mode %d", mode); 6521e07394fbSMatthew G. Knepley } 65229566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(section,f,numPoints,points,&perms,&flips)); 6523e07394fbSMatthew G. Knepley } 6524e07394fbSMatthew G. Knepley /* Cleanup points */ 65259566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm,section,point,&numPoints,&points,&clSection,&clPoints,&clp)); 6526e07394fbSMatthew G. Knepley /* Cleanup array */ 65279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &array)); 6528e07394fbSMatthew G. Knepley PetscFunctionReturn(0); 6529e07394fbSMatthew G. Knepley } 6530e07394fbSMatthew G. Knepley 65317cd05799SMatthew G. Knepley static PetscErrorCode DMPlexPrintMatSetValues(PetscViewer viewer, Mat A, PetscInt point, PetscInt numRIndices, const PetscInt rindices[], PetscInt numCIndices, const PetscInt cindices[], const PetscScalar values[]) 6532552f7358SJed Brown { 6533552f7358SJed Brown PetscMPIInt rank; 6534552f7358SJed Brown PetscInt i, j; 6535552f7358SJed Brown 6536552f7358SJed Brown PetscFunctionBegin; 65379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 653863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "[%d]mat for point %" PetscInt_FMT "\n", rank, point)); 653963a3b9bcSJacob Faibussowitsch for (i = 0; i < numRIndices; i++) PetscCall(PetscViewerASCIIPrintf(viewer, "[%d]mat row indices[%" PetscInt_FMT "] = %" PetscInt_FMT "\n", rank, i, rindices[i])); 654063a3b9bcSJacob Faibussowitsch for (i = 0; i < numCIndices; i++) PetscCall(PetscViewerASCIIPrintf(viewer, "[%d]mat col indices[%" PetscInt_FMT "] = %" PetscInt_FMT "\n", rank, i, cindices[i])); 6541b0ecff45SMatthew G. Knepley numCIndices = numCIndices ? numCIndices : numRIndices; 6542557cf195SMatthew G. Knepley if (!values) PetscFunctionReturn(0); 6543b0ecff45SMatthew G. Knepley for (i = 0; i < numRIndices; i++) { 65449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "[%d]", rank)); 6545b0ecff45SMatthew G. Knepley for (j = 0; j < numCIndices; j++) { 6546519f805aSKarl Rupp #if defined(PETSC_USE_COMPLEX) 65479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " (%g,%g)", (double)PetscRealPart(values[i*numCIndices+j]), (double)PetscImaginaryPart(values[i*numCIndices+j]))); 6548552f7358SJed Brown #else 65499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " %g", (double)values[i*numCIndices+j])); 6550552f7358SJed Brown #endif 6551552f7358SJed Brown } 65529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "\n")); 6553552f7358SJed Brown } 6554552f7358SJed Brown PetscFunctionReturn(0); 6555552f7358SJed Brown } 6556552f7358SJed Brown 655705586334SMatthew G. Knepley /* 655805586334SMatthew G. Knepley DMPlexGetIndicesPoint_Internal - Add the indices for dofs on a point to an index array 655905586334SMatthew G. Knepley 656005586334SMatthew G. Knepley Input Parameters: 656105586334SMatthew G. Knepley + section - The section for this data layout 656236fa2b79SJed Brown . islocal - Is the section (and thus indices being requested) local or global? 656305586334SMatthew G. Knepley . point - The point contributing dofs with these indices 656405586334SMatthew G. Knepley . off - The global offset of this point 656505586334SMatthew G. Knepley . loff - The local offset of each field 6566a5b23f4aSJose E. Roman . setBC - The flag determining whether to include indices of boundary values 656705586334SMatthew G. Knepley . perm - A permutation of the dofs on this point, or NULL 656805586334SMatthew G. Knepley - indperm - A permutation of the entire indices array, or NULL 656905586334SMatthew G. Knepley 657005586334SMatthew G. Knepley Output Parameter: 657105586334SMatthew G. Knepley . indices - Indices for dofs on this point 657205586334SMatthew G. Knepley 657305586334SMatthew G. Knepley Level: developer 657405586334SMatthew G. Knepley 657505586334SMatthew G. Knepley Note: The indices could be local or global, depending on the value of 'off'. 657605586334SMatthew G. Knepley */ 657736fa2b79SJed Brown PetscErrorCode DMPlexGetIndicesPoint_Internal(PetscSection section, PetscBool islocal,PetscInt point, PetscInt off, PetscInt *loff, PetscBool setBC, const PetscInt perm[], const PetscInt indperm[], PetscInt indices[]) 6578a6dfd86eSKarl Rupp { 6579e6ccafaeSMatthew G Knepley PetscInt dof; /* The number of unknowns on this point */ 6580552f7358SJed Brown PetscInt cdof; /* The number of constraints on this point */ 6581552f7358SJed Brown const PetscInt *cdofs; /* The indices of the constrained dofs on this point */ 6582552f7358SJed Brown PetscInt cind = 0, k; 6583552f7358SJed Brown 6584552f7358SJed Brown PetscFunctionBegin; 658508401ef6SPierre Jolivet PetscCheck(islocal || !setBC,PetscObjectComm((PetscObject)section),PETSC_ERR_ARG_INCOMP,"setBC incompatible with global indices; use a local section or disable setBC"); 65869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, point, &dof)); 65879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, point, &cdof)); 6588552f7358SJed Brown if (!cdof || setBC) { 658905586334SMatthew G. Knepley for (k = 0; k < dof; ++k) { 659005586334SMatthew G. Knepley const PetscInt preind = perm ? *loff+perm[k] : *loff+k; 659105586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 659205586334SMatthew G. Knepley 659305586334SMatthew G. Knepley indices[ind] = off + k; 6594552f7358SJed Brown } 6595552f7358SJed Brown } else { 65969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, point, &cdofs)); 65974acb8e1eSToby Isaac for (k = 0; k < dof; ++k) { 659805586334SMatthew G. Knepley const PetscInt preind = perm ? *loff+perm[k] : *loff+k; 659905586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 660005586334SMatthew G. Knepley 66014acb8e1eSToby Isaac if ((cind < cdof) && (k == cdofs[cind])) { 66024acb8e1eSToby Isaac /* Insert check for returning constrained indices */ 660305586334SMatthew G. Knepley indices[ind] = -(off+k+1); 66044acb8e1eSToby Isaac ++cind; 66054acb8e1eSToby Isaac } else { 660636fa2b79SJed Brown indices[ind] = off + k - (islocal ? 0 : cind); 6607552f7358SJed Brown } 6608552f7358SJed Brown } 6609552f7358SJed Brown } 6610e6ccafaeSMatthew G Knepley *loff += dof; 6611552f7358SJed Brown PetscFunctionReturn(0); 6612552f7358SJed Brown } 6613552f7358SJed Brown 66147e29afd2SMatthew G. Knepley /* 661536fa2b79SJed Brown DMPlexGetIndicesPointFields_Internal - gets section indices for a point in its canonical ordering. 66167e29afd2SMatthew G. Knepley 661736fa2b79SJed Brown Input Parameters: 661836fa2b79SJed Brown + section - a section (global or local) 661936fa2b79SJed Brown - islocal - PETSC_TRUE if requesting local indices (i.e., section is local); PETSC_FALSE for global 662036fa2b79SJed Brown . point - point within section 662136fa2b79SJed Brown . off - The offset of this point in the (local or global) indexed space - should match islocal and (usually) the section 662236fa2b79SJed Brown . foffs - array of length numFields containing the offset in canonical point ordering (the location in indices) of each field 662336fa2b79SJed Brown . setBC - identify constrained (boundary condition) points via involution. 662436fa2b79SJed Brown . perms - perms[f][permsoff][:] is a permutation of dofs within each field 662536fa2b79SJed Brown . permsoff - offset 662636fa2b79SJed Brown - indperm - index permutation 662736fa2b79SJed Brown 662836fa2b79SJed Brown Output Parameter: 662936fa2b79SJed Brown . foffs - each entry is incremented by the number of (unconstrained if setBC=FALSE) dofs in that field 663036fa2b79SJed Brown . indices - array to hold indices (as defined by section) of each dof associated with point 663136fa2b79SJed Brown 663236fa2b79SJed Brown Notes: 663336fa2b79SJed Brown If section is local and setBC=true, there is no distinction between constrained and unconstrained dofs. 663436fa2b79SJed Brown If section is local and setBC=false, the indices for constrained points are the involution -(i+1) of their position 663536fa2b79SJed Brown in the local vector. 663636fa2b79SJed Brown 663736fa2b79SJed Brown If section is global and setBC=false, the indices for constrained points are negative (and their value is not 663836fa2b79SJed Brown significant). It is invalid to call with a global section and setBC=true. 663936fa2b79SJed Brown 664036fa2b79SJed Brown Developer Note: 664136fa2b79SJed Brown The section is only used for field layout, so islocal is technically a statement about the offset (off). At some point 664236fa2b79SJed Brown in the future, global sections may have fields set, in which case we could pass the global section and obtain the 664336fa2b79SJed Brown offset could be obtained from the section instead of passing it explicitly as we do now. 664436fa2b79SJed Brown 664536fa2b79SJed Brown Example: 664636fa2b79SJed Brown Suppose a point contains one field with three components, and for which the unconstrained indices are {10, 11, 12}. 664736fa2b79SJed Brown When the middle component is constrained, we get the array {10, -12, 12} for (islocal=TRUE, setBC=FALSE). 664836fa2b79SJed Brown Note that -12 is the involution of 11, so the user can involute negative indices to recover local indices. 664936fa2b79SJed Brown The global vector does not store constrained dofs, so when this function returns global indices, say {110, -112, 111}, the value of -112 is an arbitrary flag that should not be interpreted beyond its sign. 665036fa2b79SJed Brown 665136fa2b79SJed Brown Level: developer 66527e29afd2SMatthew G. Knepley */ 665336fa2b79SJed Brown PetscErrorCode DMPlexGetIndicesPointFields_Internal(PetscSection section, PetscBool islocal, PetscInt point, PetscInt off, PetscInt foffs[], PetscBool setBC, const PetscInt ***perms, PetscInt permsoff, const PetscInt indperm[], PetscInt indices[]) 6654a6dfd86eSKarl Rupp { 6655552f7358SJed Brown PetscInt numFields, foff, f; 6656552f7358SJed Brown 6657552f7358SJed Brown PetscFunctionBegin; 665808401ef6SPierre Jolivet PetscCheck(islocal || !setBC,PetscObjectComm((PetscObject)section),PETSC_ERR_ARG_INCOMP,"setBC incompatible with global indices; use a local section or disable setBC"); 66599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 6660552f7358SJed Brown for (f = 0, foff = 0; f < numFields; ++f) { 66614acb8e1eSToby Isaac PetscInt fdof, cfdof; 6662552f7358SJed Brown const PetscInt *fcdofs; /* The indices of the constrained dofs for field f on this point */ 66634acb8e1eSToby Isaac PetscInt cind = 0, b; 66644acb8e1eSToby Isaac const PetscInt *perm = (perms && perms[f]) ? perms[f][permsoff] : NULL; 6665552f7358SJed Brown 66669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 66679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, point, f, &cfdof)); 6668552f7358SJed Brown if (!cfdof || setBC) { 666905586334SMatthew G. Knepley for (b = 0; b < fdof; ++b) { 667005586334SMatthew G. Knepley const PetscInt preind = perm ? foffs[f]+perm[b] : foffs[f]+b; 667105586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 667205586334SMatthew G. Knepley 667305586334SMatthew G. Knepley indices[ind] = off+foff+b; 667405586334SMatthew G. Knepley } 6675552f7358SJed Brown } else { 66769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(section, point, f, &fcdofs)); 667705586334SMatthew G. Knepley for (b = 0; b < fdof; ++b) { 667805586334SMatthew G. Knepley const PetscInt preind = perm ? foffs[f]+perm[b] : foffs[f]+b; 667905586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 668005586334SMatthew G. Knepley 66814acb8e1eSToby Isaac if ((cind < cfdof) && (b == fcdofs[cind])) { 668205586334SMatthew G. Knepley indices[ind] = -(off+foff+b+1); 6683552f7358SJed Brown ++cind; 6684552f7358SJed Brown } else { 668536fa2b79SJed Brown indices[ind] = off + foff + b - (islocal ? 0 : cind); 6686552f7358SJed Brown } 6687552f7358SJed Brown } 6688552f7358SJed Brown } 668936fa2b79SJed Brown foff += (setBC || islocal ? fdof : (fdof - cfdof)); 6690552f7358SJed Brown foffs[f] += fdof; 6691552f7358SJed Brown } 6692552f7358SJed Brown PetscFunctionReturn(0); 6693552f7358SJed Brown } 6694552f7358SJed Brown 66957e29afd2SMatthew G. Knepley /* 66967e29afd2SMatthew G. Knepley This version believes the globalSection offsets for each field, rather than just the point offset 66977e29afd2SMatthew G. Knepley 66987e29afd2SMatthew G. Knepley . foffs - The offset into 'indices' for each field, since it is segregated by field 6699645102dcSJed Brown 6700645102dcSJed Brown Notes: 6701645102dcSJed Brown The semantics of this function relate to that of setBC=FALSE in DMPlexGetIndicesPointFields_Internal. 6702645102dcSJed Brown Since this function uses global indices, setBC=TRUE would be invalid, so no such argument exists. 67037e29afd2SMatthew G. Knepley */ 6704645102dcSJed Brown static PetscErrorCode DMPlexGetIndicesPointFieldsSplit_Internal(PetscSection section, PetscSection globalSection, PetscInt point, PetscInt foffs[], const PetscInt ***perms, PetscInt permsoff, const PetscInt indperm[], PetscInt indices[]) 67057e29afd2SMatthew G. Knepley { 67067e29afd2SMatthew G. Knepley PetscInt numFields, foff, f; 67077e29afd2SMatthew G. Knepley 67087e29afd2SMatthew G. Knepley PetscFunctionBegin; 67099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 67107e29afd2SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 67117e29afd2SMatthew G. Knepley PetscInt fdof, cfdof; 67127e29afd2SMatthew G. Knepley const PetscInt *fcdofs; /* The indices of the constrained dofs for field f on this point */ 67137e29afd2SMatthew G. Knepley PetscInt cind = 0, b; 67147e29afd2SMatthew G. Knepley const PetscInt *perm = (perms && perms[f]) ? perms[f][permsoff] : NULL; 67157e29afd2SMatthew G. Knepley 67169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, point, f, &fdof)); 67179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, point, f, &cfdof)); 67189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(globalSection, point, f, &foff)); 6719645102dcSJed Brown if (!cfdof) { 672005586334SMatthew G. Knepley for (b = 0; b < fdof; ++b) { 672105586334SMatthew G. Knepley const PetscInt preind = perm ? foffs[f]+perm[b] : foffs[f]+b; 672205586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 672305586334SMatthew G. Knepley 672405586334SMatthew G. Knepley indices[ind] = foff+b; 672505586334SMatthew G. Knepley } 67267e29afd2SMatthew G. Knepley } else { 67279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintIndices(section, point, f, &fcdofs)); 672805586334SMatthew G. Knepley for (b = 0; b < fdof; ++b) { 672905586334SMatthew G. Knepley const PetscInt preind = perm ? foffs[f]+perm[b] : foffs[f]+b; 673005586334SMatthew G. Knepley const PetscInt ind = indperm ? indperm[preind] : preind; 673105586334SMatthew G. Knepley 67327e29afd2SMatthew G. Knepley if ((cind < cfdof) && (b == fcdofs[cind])) { 673305586334SMatthew G. Knepley indices[ind] = -(foff+b+1); 67347e29afd2SMatthew G. Knepley ++cind; 67357e29afd2SMatthew G. Knepley } else { 673605586334SMatthew G. Knepley indices[ind] = foff+b-cind; 67377e29afd2SMatthew G. Knepley } 67387e29afd2SMatthew G. Knepley } 67397e29afd2SMatthew G. Knepley } 67407e29afd2SMatthew G. Knepley foffs[f] += fdof; 67417e29afd2SMatthew G. Knepley } 67427e29afd2SMatthew G. Knepley PetscFunctionReturn(0); 67437e29afd2SMatthew G. Knepley } 67447e29afd2SMatthew G. Knepley 67454acb8e1eSToby Isaac PetscErrorCode DMPlexAnchorsModifyMat(DM dm, PetscSection section, PetscInt numPoints, PetscInt numIndices, const PetscInt points[], const PetscInt ***perms, const PetscScalar values[], PetscInt *outNumPoints, PetscInt *outNumIndices, PetscInt *outPoints[], PetscScalar *outValues[], PetscInt offsets[], PetscBool multiplyLeft) 6746d3d1a6afSToby Isaac { 6747d3d1a6afSToby Isaac Mat cMat; 6748d3d1a6afSToby Isaac PetscSection aSec, cSec; 6749d3d1a6afSToby Isaac IS aIS; 6750d3d1a6afSToby Isaac PetscInt aStart = -1, aEnd = -1; 6751d3d1a6afSToby Isaac const PetscInt *anchors; 6752e17c06e0SMatthew G. Knepley PetscInt numFields, f, p, q, newP = 0; 6753d3d1a6afSToby Isaac PetscInt newNumPoints = 0, newNumIndices = 0; 6754d3d1a6afSToby Isaac PetscInt *newPoints, *indices, *newIndices; 6755d3d1a6afSToby Isaac PetscInt maxAnchor, maxDof; 6756d3d1a6afSToby Isaac PetscInt newOffsets[32]; 6757d3d1a6afSToby Isaac PetscInt *pointMatOffsets[32]; 6758d3d1a6afSToby Isaac PetscInt *newPointOffsets[32]; 6759d3d1a6afSToby Isaac PetscScalar *pointMat[32]; 67606ecaa68aSToby Isaac PetscScalar *newValues=NULL,*tmpValues; 6761d3d1a6afSToby Isaac PetscBool anyConstrained = PETSC_FALSE; 6762d3d1a6afSToby Isaac 6763d3d1a6afSToby Isaac PetscFunctionBegin; 6764d3d1a6afSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6765d3d1a6afSToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 67669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 6767d3d1a6afSToby Isaac 67689566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS)); 6769d3d1a6afSToby Isaac /* if there are point-to-point constraints */ 6770d3d1a6afSToby Isaac if (aSec) { 67719566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(newOffsets, 32)); 67729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS,&anchors)); 67739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(aSec,&aStart,&aEnd)); 6774d3d1a6afSToby Isaac /* figure out how many points are going to be in the new element matrix 6775d3d1a6afSToby Isaac * (we allow double counting, because it's all just going to be summed 6776d3d1a6afSToby Isaac * into the global matrix anyway) */ 6777d3d1a6afSToby Isaac for (p = 0; p < 2*numPoints; p+=2) { 6778d3d1a6afSToby Isaac PetscInt b = points[p]; 67794b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 6780d3d1a6afSToby Isaac 67819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&bSecDof)); 67824b2f2278SToby Isaac if (!bSecDof) { 67834b2f2278SToby Isaac continue; 67844b2f2278SToby Isaac } 6785d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 67869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,b,&bDof)); 6787d3d1a6afSToby Isaac } 6788d3d1a6afSToby Isaac if (bDof) { 6789d3d1a6afSToby Isaac /* this point is constrained */ 6790d3d1a6afSToby Isaac /* it is going to be replaced by its anchors */ 6791d3d1a6afSToby Isaac PetscInt bOff, q; 6792d3d1a6afSToby Isaac 6793d3d1a6afSToby Isaac anyConstrained = PETSC_TRUE; 6794d3d1a6afSToby Isaac newNumPoints += bDof; 67959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,b,&bOff)); 6796d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 6797d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q]; 6798d3d1a6afSToby Isaac PetscInt aDof; 6799d3d1a6afSToby Isaac 68009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,a,&aDof)); 6801d3d1a6afSToby Isaac newNumIndices += aDof; 6802d3d1a6afSToby Isaac for (f = 0; f < numFields; ++f) { 6803d3d1a6afSToby Isaac PetscInt fDof; 6804d3d1a6afSToby Isaac 68059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, a, f, &fDof)); 6806d3d1a6afSToby Isaac newOffsets[f+1] += fDof; 6807d3d1a6afSToby Isaac } 6808d3d1a6afSToby Isaac } 6809d3d1a6afSToby Isaac } 6810d3d1a6afSToby Isaac else { 6811d3d1a6afSToby Isaac /* this point is not constrained */ 6812d3d1a6afSToby Isaac newNumPoints++; 68134b2f2278SToby Isaac newNumIndices += bSecDof; 6814d3d1a6afSToby Isaac for (f = 0; f < numFields; ++f) { 6815d3d1a6afSToby Isaac PetscInt fDof; 6816d3d1a6afSToby Isaac 68179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, b, f, &fDof)); 6818d3d1a6afSToby Isaac newOffsets[f+1] += fDof; 6819d3d1a6afSToby Isaac } 6820d3d1a6afSToby Isaac } 6821d3d1a6afSToby Isaac } 6822d3d1a6afSToby Isaac } 6823d3d1a6afSToby Isaac if (!anyConstrained) { 682472b80496SMatthew G. Knepley if (outNumPoints) *outNumPoints = 0; 682572b80496SMatthew G. Knepley if (outNumIndices) *outNumIndices = 0; 682672b80496SMatthew G. Knepley if (outPoints) *outPoints = NULL; 682772b80496SMatthew G. Knepley if (outValues) *outValues = NULL; 68289566063dSJacob Faibussowitsch if (aSec) PetscCall(ISRestoreIndices(aIS,&anchors)); 6829d3d1a6afSToby Isaac PetscFunctionReturn(0); 6830d3d1a6afSToby Isaac } 6831d3d1a6afSToby Isaac 68326ecaa68aSToby Isaac if (outNumPoints) *outNumPoints = newNumPoints; 68336ecaa68aSToby Isaac if (outNumIndices) *outNumIndices = newNumIndices; 68346ecaa68aSToby Isaac 6835f13f9184SToby Isaac for (f = 0; f < numFields; ++f) newOffsets[f+1] += newOffsets[f]; 6836d3d1a6afSToby Isaac 68376ecaa68aSToby Isaac if (!outPoints && !outValues) { 68386ecaa68aSToby Isaac if (offsets) { 68396ecaa68aSToby Isaac for (f = 0; f <= numFields; f++) { 68406ecaa68aSToby Isaac offsets[f] = newOffsets[f]; 68416ecaa68aSToby Isaac } 68426ecaa68aSToby Isaac } 68439566063dSJacob Faibussowitsch if (aSec) PetscCall(ISRestoreIndices(aIS,&anchors)); 68446ecaa68aSToby Isaac PetscFunctionReturn(0); 68456ecaa68aSToby Isaac } 68466ecaa68aSToby Isaac 68471dca8a05SBarry Smith PetscCheck(!numFields || newOffsets[numFields] == newNumIndices,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, newOffsets[numFields], newNumIndices); 6848d3d1a6afSToby Isaac 68499566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 6850d3d1a6afSToby Isaac 6851d3d1a6afSToby Isaac /* workspaces */ 6852d3d1a6afSToby Isaac if (numFields) { 6853d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 68549566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,numPoints+1,MPIU_INT,&pointMatOffsets[f])); 68559566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,numPoints+1,MPIU_INT,&newPointOffsets[f])); 6856d3d1a6afSToby Isaac } 6857d3d1a6afSToby Isaac } 6858d3d1a6afSToby Isaac else { 68599566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,numPoints+1,MPIU_INT,&pointMatOffsets[0])); 68609566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,numPoints,MPIU_INT,&newPointOffsets[0])); 6861d3d1a6afSToby Isaac } 6862d3d1a6afSToby Isaac 6863d3d1a6afSToby Isaac /* get workspaces for the point-to-point matrices */ 6864d3d1a6afSToby Isaac if (numFields) { 68654b2f2278SToby Isaac PetscInt totalOffset, totalMatOffset; 68664b2f2278SToby Isaac 6867d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 6868d3d1a6afSToby Isaac PetscInt b = points[2*p]; 68694b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 6870d3d1a6afSToby Isaac 68719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&bSecDof)); 68724b2f2278SToby Isaac if (!bSecDof) { 68734b2f2278SToby Isaac for (f = 0; f < numFields; f++) { 68744b2f2278SToby Isaac newPointOffsets[f][p + 1] = 0; 68754b2f2278SToby Isaac pointMatOffsets[f][p + 1] = 0; 68764b2f2278SToby Isaac } 68774b2f2278SToby Isaac continue; 68784b2f2278SToby Isaac } 6879d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 68809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec, b, &bDof)); 6881d3d1a6afSToby Isaac } 6882d3d1a6afSToby Isaac if (bDof) { 6883d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 6884d3d1a6afSToby Isaac PetscInt fDof, q, bOff, allFDof = 0; 6885d3d1a6afSToby Isaac 68869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, b, f, &fDof)); 68879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec, b, &bOff)); 6888d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 6889d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q]; 6890d3d1a6afSToby Isaac PetscInt aFDof; 6891d3d1a6afSToby Isaac 68929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, a, f, &aFDof)); 6893d3d1a6afSToby Isaac allFDof += aFDof; 6894d3d1a6afSToby Isaac } 6895d3d1a6afSToby Isaac newPointOffsets[f][p+1] = allFDof; 6896d3d1a6afSToby Isaac pointMatOffsets[f][p+1] = fDof * allFDof; 6897d3d1a6afSToby Isaac } 6898d3d1a6afSToby Isaac } 6899d3d1a6afSToby Isaac else { 6900d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 6901d3d1a6afSToby Isaac PetscInt fDof; 6902d3d1a6afSToby Isaac 69039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, b, f, &fDof)); 6904d3d1a6afSToby Isaac newPointOffsets[f][p+1] = fDof; 6905d3d1a6afSToby Isaac pointMatOffsets[f][p+1] = 0; 6906d3d1a6afSToby Isaac } 6907d3d1a6afSToby Isaac } 6908d3d1a6afSToby Isaac } 69094b2f2278SToby Isaac for (f = 0, totalOffset = 0, totalMatOffset = 0; f < numFields; f++) { 69104b2f2278SToby Isaac newPointOffsets[f][0] = totalOffset; 69114b2f2278SToby Isaac pointMatOffsets[f][0] = totalMatOffset; 6912d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 6913d3d1a6afSToby Isaac newPointOffsets[f][p+1] += newPointOffsets[f][p]; 6914d3d1a6afSToby Isaac pointMatOffsets[f][p+1] += pointMatOffsets[f][p]; 6915d3d1a6afSToby Isaac } 691619f70fd5SToby Isaac totalOffset = newPointOffsets[f][numPoints]; 691719f70fd5SToby Isaac totalMatOffset = pointMatOffsets[f][numPoints]; 69189566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,pointMatOffsets[f][numPoints],MPIU_SCALAR,&pointMat[f])); 6919d3d1a6afSToby Isaac } 6920d3d1a6afSToby Isaac } 6921d3d1a6afSToby Isaac else { 6922d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 6923d3d1a6afSToby Isaac PetscInt b = points[2*p]; 69244b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 6925d3d1a6afSToby Isaac 69269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&bSecDof)); 69274b2f2278SToby Isaac if (!bSecDof) { 69284b2f2278SToby Isaac newPointOffsets[0][p + 1] = 0; 69294b2f2278SToby Isaac pointMatOffsets[0][p + 1] = 0; 69304b2f2278SToby Isaac continue; 69314b2f2278SToby Isaac } 6932d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 69339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec, b, &bDof)); 6934d3d1a6afSToby Isaac } 6935d3d1a6afSToby Isaac if (bDof) { 69364b2f2278SToby Isaac PetscInt bOff, q, allDof = 0; 6937d3d1a6afSToby Isaac 69389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec, b, &bOff)); 6939d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 6940d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q], aDof; 6941d3d1a6afSToby Isaac 69429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, a, &aDof)); 6943d3d1a6afSToby Isaac allDof += aDof; 6944d3d1a6afSToby Isaac } 6945d3d1a6afSToby Isaac newPointOffsets[0][p+1] = allDof; 69464b2f2278SToby Isaac pointMatOffsets[0][p+1] = bSecDof * allDof; 6947d3d1a6afSToby Isaac } 6948d3d1a6afSToby Isaac else { 69494b2f2278SToby Isaac newPointOffsets[0][p+1] = bSecDof; 6950d3d1a6afSToby Isaac pointMatOffsets[0][p+1] = 0; 6951d3d1a6afSToby Isaac } 6952d3d1a6afSToby Isaac } 6953d3d1a6afSToby Isaac newPointOffsets[0][0] = 0; 6954d3d1a6afSToby Isaac pointMatOffsets[0][0] = 0; 6955d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 6956d3d1a6afSToby Isaac newPointOffsets[0][p+1] += newPointOffsets[0][p]; 6957d3d1a6afSToby Isaac pointMatOffsets[0][p+1] += pointMatOffsets[0][p]; 6958d3d1a6afSToby Isaac } 69599566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,pointMatOffsets[0][numPoints],MPIU_SCALAR,&pointMat[0])); 6960d3d1a6afSToby Isaac } 6961d3d1a6afSToby Isaac 69626ecaa68aSToby Isaac /* output arrays */ 69639566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,2*newNumPoints,MPIU_INT,&newPoints)); 69646ecaa68aSToby Isaac 6965d3d1a6afSToby Isaac /* get the point-to-point matrices; construct newPoints */ 69669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(aSec, &maxAnchor)); 69679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 69689566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,maxDof,MPIU_INT,&indices)); 69699566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,maxAnchor*maxDof,MPIU_INT,&newIndices)); 6970d3d1a6afSToby Isaac if (numFields) { 6971d3d1a6afSToby Isaac for (p = 0, newP = 0; p < numPoints; p++) { 6972d3d1a6afSToby Isaac PetscInt b = points[2*p]; 6973d3d1a6afSToby Isaac PetscInt o = points[2*p+1]; 69744b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 6975d3d1a6afSToby Isaac 69769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, b, &bSecDof)); 69774b2f2278SToby Isaac if (!bSecDof) { 69784b2f2278SToby Isaac continue; 69794b2f2278SToby Isaac } 6980d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 69819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec, b, &bDof)); 6982d3d1a6afSToby Isaac } 6983d3d1a6afSToby Isaac if (bDof) { 6984d3d1a6afSToby Isaac PetscInt fStart[32], fEnd[32], fAnchorStart[32], fAnchorEnd[32], bOff, q; 6985d3d1a6afSToby Isaac 6986d3d1a6afSToby Isaac fStart[0] = 0; 6987d3d1a6afSToby Isaac fEnd[0] = 0; 6988d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 6989d3d1a6afSToby Isaac PetscInt fDof; 6990d3d1a6afSToby Isaac 69919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(cSec, b, f, &fDof)); 6992d3d1a6afSToby Isaac fStart[f+1] = fStart[f] + fDof; 6993d3d1a6afSToby Isaac fEnd[f+1] = fStart[f+1]; 6994d3d1a6afSToby Isaac } 69959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cSec, b, &bOff)); 69969566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(cSec, PETSC_TRUE, b, bOff, fEnd, PETSC_TRUE, perms, p, NULL, indices)); 6997d3d1a6afSToby Isaac 6998d3d1a6afSToby Isaac fAnchorStart[0] = 0; 6999d3d1a6afSToby Isaac fAnchorEnd[0] = 0; 7000d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 7001d3d1a6afSToby Isaac PetscInt fDof = newPointOffsets[f][p + 1] - newPointOffsets[f][p]; 7002d3d1a6afSToby Isaac 7003d3d1a6afSToby Isaac fAnchorStart[f+1] = fAnchorStart[f] + fDof; 7004d3d1a6afSToby Isaac fAnchorEnd[f+1] = fAnchorStart[f + 1]; 7005d3d1a6afSToby Isaac } 70069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec, b, &bOff)); 7007d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 7008d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q], aOff; 7009d3d1a6afSToby Isaac 7010d3d1a6afSToby Isaac /* we take the orientation of ap into account in the order that we constructed the indices above: the newly added points have no orientation */ 7011d3d1a6afSToby Isaac newPoints[2*(newP + q)] = a; 7012d3d1a6afSToby Isaac newPoints[2*(newP + q) + 1] = 0; 70139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, a, &aOff)); 70149566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(section, PETSC_TRUE, a, aOff, fAnchorEnd, PETSC_TRUE, NULL, -1, NULL, newIndices)); 7015d3d1a6afSToby Isaac } 7016d3d1a6afSToby Isaac newP += bDof; 7017d3d1a6afSToby Isaac 70186ecaa68aSToby Isaac if (outValues) { 7019d3d1a6afSToby Isaac /* get the point-to-point submatrix */ 7020d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 70219566063dSJacob Faibussowitsch PetscCall(MatGetValues(cMat,fEnd[f]-fStart[f],indices + fStart[f],fAnchorEnd[f] - fAnchorStart[f],newIndices + fAnchorStart[f],pointMat[f] + pointMatOffsets[f][p])); 7022d3d1a6afSToby Isaac } 7023d3d1a6afSToby Isaac } 70246ecaa68aSToby Isaac } 7025d3d1a6afSToby Isaac else { 7026d3d1a6afSToby Isaac newPoints[2 * newP] = b; 7027d3d1a6afSToby Isaac newPoints[2 * newP + 1] = o; 7028d3d1a6afSToby Isaac newP++; 7029d3d1a6afSToby Isaac } 7030d3d1a6afSToby Isaac } 7031d3d1a6afSToby Isaac } else { 7032d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7033d3d1a6afSToby Isaac PetscInt b = points[2*p]; 7034d3d1a6afSToby Isaac PetscInt o = points[2*p+1]; 70354b2f2278SToby Isaac PetscInt bDof = 0, bSecDof; 7036d3d1a6afSToby Isaac 70379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, b, &bSecDof)); 70384b2f2278SToby Isaac if (!bSecDof) { 70394b2f2278SToby Isaac continue; 70404b2f2278SToby Isaac } 7041d3d1a6afSToby Isaac if (b >= aStart && b < aEnd) { 70429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec, b, &bDof)); 7043d3d1a6afSToby Isaac } 7044d3d1a6afSToby Isaac if (bDof) { 7045d3d1a6afSToby Isaac PetscInt bEnd = 0, bAnchorEnd = 0, bOff; 7046d3d1a6afSToby Isaac 70479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cSec, b, &bOff)); 70489566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(cSec, PETSC_TRUE, b, bOff, &bEnd, PETSC_TRUE, (perms && perms[0]) ? perms[0][p] : NULL, NULL, indices)); 7049d3d1a6afSToby Isaac 70509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset (aSec, b, &bOff)); 7051d3d1a6afSToby Isaac for (q = 0; q < bDof; q++) { 7052d3d1a6afSToby Isaac PetscInt a = anchors[bOff + q], aOff; 7053d3d1a6afSToby Isaac 7054d3d1a6afSToby Isaac /* we take the orientation of ap into account in the order that we constructed the indices above: the newly added points have no orientation */ 7055d3d1a6afSToby Isaac 7056d3d1a6afSToby Isaac newPoints[2*(newP + q)] = a; 7057d3d1a6afSToby Isaac newPoints[2*(newP + q) + 1] = 0; 70589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, a, &aOff)); 70599566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(section, PETSC_TRUE, a, aOff, &bAnchorEnd, PETSC_TRUE, NULL, NULL, newIndices)); 7060d3d1a6afSToby Isaac } 7061d3d1a6afSToby Isaac newP += bDof; 7062d3d1a6afSToby Isaac 7063d3d1a6afSToby Isaac /* get the point-to-point submatrix */ 70646ecaa68aSToby Isaac if (outValues) { 70659566063dSJacob Faibussowitsch PetscCall(MatGetValues(cMat,bEnd,indices,bAnchorEnd,newIndices,pointMat[0] + pointMatOffsets[0][p])); 7066d3d1a6afSToby Isaac } 70676ecaa68aSToby Isaac } 7068d3d1a6afSToby Isaac else { 7069d3d1a6afSToby Isaac newPoints[2 * newP] = b; 7070d3d1a6afSToby Isaac newPoints[2 * newP + 1] = o; 7071d3d1a6afSToby Isaac newP++; 7072d3d1a6afSToby Isaac } 7073d3d1a6afSToby Isaac } 7074d3d1a6afSToby Isaac } 7075d3d1a6afSToby Isaac 70766ecaa68aSToby Isaac if (outValues) { 70779566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,newNumIndices*numIndices,MPIU_SCALAR,&tmpValues)); 70789566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(tmpValues,newNumIndices*numIndices)); 7079d3d1a6afSToby Isaac /* multiply constraints on the right */ 7080d3d1a6afSToby Isaac if (numFields) { 7081d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 7082d3d1a6afSToby Isaac PetscInt oldOff = offsets[f]; 7083d3d1a6afSToby Isaac 7084d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7085d3d1a6afSToby Isaac PetscInt cStart = newPointOffsets[f][p]; 7086d3d1a6afSToby Isaac PetscInt b = points[2 * p]; 7087d3d1a6afSToby Isaac PetscInt c, r, k; 7088d3d1a6afSToby Isaac PetscInt dof; 7089d3d1a6afSToby Isaac 70909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,b,f,&dof)); 70914b2f2278SToby Isaac if (!dof) { 70924b2f2278SToby Isaac continue; 70934b2f2278SToby Isaac } 7094d3d1a6afSToby Isaac if (pointMatOffsets[f][p] < pointMatOffsets[f][p + 1]) { 7095d3d1a6afSToby Isaac PetscInt nCols = newPointOffsets[f][p+1]-cStart; 7096d3d1a6afSToby Isaac const PetscScalar *mat = pointMat[f] + pointMatOffsets[f][p]; 7097d3d1a6afSToby Isaac 7098d3d1a6afSToby Isaac for (r = 0; r < numIndices; r++) { 7099d3d1a6afSToby Isaac for (c = 0; c < nCols; c++) { 7100d3d1a6afSToby Isaac for (k = 0; k < dof; k++) { 71014acb8e1eSToby Isaac tmpValues[r * newNumIndices + cStart + c] += values[r * numIndices + oldOff + k] * mat[k * nCols + c]; 7102d3d1a6afSToby Isaac } 7103d3d1a6afSToby Isaac } 7104d3d1a6afSToby Isaac } 7105d3d1a6afSToby Isaac } 7106d3d1a6afSToby Isaac else { 7107d3d1a6afSToby Isaac /* copy this column as is */ 7108d3d1a6afSToby Isaac for (r = 0; r < numIndices; r++) { 7109d3d1a6afSToby Isaac for (c = 0; c < dof; c++) { 7110d3d1a6afSToby Isaac tmpValues[r * newNumIndices + cStart + c] = values[r * numIndices + oldOff + c]; 7111d3d1a6afSToby Isaac } 7112d3d1a6afSToby Isaac } 7113d3d1a6afSToby Isaac } 7114d3d1a6afSToby Isaac oldOff += dof; 7115d3d1a6afSToby Isaac } 7116d3d1a6afSToby Isaac } 7117d3d1a6afSToby Isaac } 7118d3d1a6afSToby Isaac else { 7119d3d1a6afSToby Isaac PetscInt oldOff = 0; 7120d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7121d3d1a6afSToby Isaac PetscInt cStart = newPointOffsets[0][p]; 7122d3d1a6afSToby Isaac PetscInt b = points[2 * p]; 7123d3d1a6afSToby Isaac PetscInt c, r, k; 7124d3d1a6afSToby Isaac PetscInt dof; 7125d3d1a6afSToby Isaac 71269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&dof)); 71274b2f2278SToby Isaac if (!dof) { 71284b2f2278SToby Isaac continue; 71294b2f2278SToby Isaac } 7130d3d1a6afSToby Isaac if (pointMatOffsets[0][p] < pointMatOffsets[0][p + 1]) { 7131d3d1a6afSToby Isaac PetscInt nCols = newPointOffsets[0][p+1]-cStart; 7132d3d1a6afSToby Isaac const PetscScalar *mat = pointMat[0] + pointMatOffsets[0][p]; 7133d3d1a6afSToby Isaac 7134d3d1a6afSToby Isaac for (r = 0; r < numIndices; r++) { 7135d3d1a6afSToby Isaac for (c = 0; c < nCols; c++) { 7136d3d1a6afSToby Isaac for (k = 0; k < dof; k++) { 7137d3d1a6afSToby Isaac tmpValues[r * newNumIndices + cStart + c] += mat[k * nCols + c] * values[r * numIndices + oldOff + k]; 7138d3d1a6afSToby Isaac } 7139d3d1a6afSToby Isaac } 7140d3d1a6afSToby Isaac } 7141d3d1a6afSToby Isaac } 7142d3d1a6afSToby Isaac else { 7143d3d1a6afSToby Isaac /* copy this column as is */ 7144d3d1a6afSToby Isaac for (r = 0; r < numIndices; r++) { 7145d3d1a6afSToby Isaac for (c = 0; c < dof; c++) { 7146d3d1a6afSToby Isaac tmpValues[r * newNumIndices + cStart + c] = values[r * numIndices + oldOff + c]; 7147d3d1a6afSToby Isaac } 7148d3d1a6afSToby Isaac } 7149d3d1a6afSToby Isaac } 7150d3d1a6afSToby Isaac oldOff += dof; 7151d3d1a6afSToby Isaac } 7152d3d1a6afSToby Isaac } 7153d3d1a6afSToby Isaac 71546ecaa68aSToby Isaac if (multiplyLeft) { 71559566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm,newNumIndices*newNumIndices,MPIU_SCALAR,&newValues)); 71569566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(newValues,newNumIndices*newNumIndices)); 7157d3d1a6afSToby Isaac /* multiply constraints transpose on the left */ 7158d3d1a6afSToby Isaac if (numFields) { 7159d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 7160d3d1a6afSToby Isaac PetscInt oldOff = offsets[f]; 7161d3d1a6afSToby Isaac 7162d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7163d3d1a6afSToby Isaac PetscInt rStart = newPointOffsets[f][p]; 7164d3d1a6afSToby Isaac PetscInt b = points[2 * p]; 7165d3d1a6afSToby Isaac PetscInt c, r, k; 7166d3d1a6afSToby Isaac PetscInt dof; 7167d3d1a6afSToby Isaac 71689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,b,f,&dof)); 7169d3d1a6afSToby Isaac if (pointMatOffsets[f][p] < pointMatOffsets[f][p + 1]) { 7170d3d1a6afSToby Isaac PetscInt nRows = newPointOffsets[f][p+1]-rStart; 7171d3d1a6afSToby Isaac const PetscScalar *PETSC_RESTRICT mat = pointMat[f] + pointMatOffsets[f][p]; 7172d3d1a6afSToby Isaac 7173d3d1a6afSToby Isaac for (r = 0; r < nRows; r++) { 7174d3d1a6afSToby Isaac for (c = 0; c < newNumIndices; c++) { 7175d3d1a6afSToby Isaac for (k = 0; k < dof; k++) { 7176d3d1a6afSToby Isaac newValues[(rStart + r) * newNumIndices + c] += mat[k * nRows + r] * tmpValues[(oldOff + k) * newNumIndices + c]; 7177d3d1a6afSToby Isaac } 7178d3d1a6afSToby Isaac } 7179d3d1a6afSToby Isaac } 7180d3d1a6afSToby Isaac } 7181d3d1a6afSToby Isaac else { 7182d3d1a6afSToby Isaac /* copy this row as is */ 7183d3d1a6afSToby Isaac for (r = 0; r < dof; r++) { 7184d3d1a6afSToby Isaac for (c = 0; c < newNumIndices; c++) { 7185d3d1a6afSToby Isaac newValues[(rStart + r) * newNumIndices + c] = tmpValues[(oldOff + r) * newNumIndices + c]; 7186d3d1a6afSToby Isaac } 7187d3d1a6afSToby Isaac } 7188d3d1a6afSToby Isaac } 7189d3d1a6afSToby Isaac oldOff += dof; 7190d3d1a6afSToby Isaac } 7191d3d1a6afSToby Isaac } 7192d3d1a6afSToby Isaac } 7193d3d1a6afSToby Isaac else { 7194d3d1a6afSToby Isaac PetscInt oldOff = 0; 7195d3d1a6afSToby Isaac 7196d3d1a6afSToby Isaac for (p = 0; p < numPoints; p++) { 7197d3d1a6afSToby Isaac PetscInt rStart = newPointOffsets[0][p]; 7198d3d1a6afSToby Isaac PetscInt b = points[2 * p]; 7199d3d1a6afSToby Isaac PetscInt c, r, k; 7200d3d1a6afSToby Isaac PetscInt dof; 7201d3d1a6afSToby Isaac 72029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,b,&dof)); 7203d3d1a6afSToby Isaac if (pointMatOffsets[0][p] < pointMatOffsets[0][p + 1]) { 7204d3d1a6afSToby Isaac PetscInt nRows = newPointOffsets[0][p+1]-rStart; 7205d3d1a6afSToby Isaac const PetscScalar *PETSC_RESTRICT mat = pointMat[0] + pointMatOffsets[0][p]; 7206d3d1a6afSToby Isaac 7207d3d1a6afSToby Isaac for (r = 0; r < nRows; r++) { 7208d3d1a6afSToby Isaac for (c = 0; c < newNumIndices; c++) { 7209d3d1a6afSToby Isaac for (k = 0; k < dof; k++) { 7210d3d1a6afSToby Isaac newValues[(rStart + r) * newNumIndices + c] += mat[k * nRows + r] * tmpValues[(oldOff + k) * newNumIndices + c]; 7211d3d1a6afSToby Isaac } 7212d3d1a6afSToby Isaac } 7213d3d1a6afSToby Isaac } 7214d3d1a6afSToby Isaac } 7215d3d1a6afSToby Isaac else { 7216d3d1a6afSToby Isaac /* copy this row as is */ 72179fc93327SToby Isaac for (r = 0; r < dof; r++) { 7218d3d1a6afSToby Isaac for (c = 0; c < newNumIndices; c++) { 7219d3d1a6afSToby Isaac newValues[(rStart + r) * newNumIndices + c] = tmpValues[(oldOff + r) * newNumIndices + c]; 7220d3d1a6afSToby Isaac } 7221d3d1a6afSToby Isaac } 7222d3d1a6afSToby Isaac } 7223d3d1a6afSToby Isaac oldOff += dof; 7224d3d1a6afSToby Isaac } 7225d3d1a6afSToby Isaac } 7226d3d1a6afSToby Isaac 72279566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,newNumIndices*numIndices,MPIU_SCALAR,&tmpValues)); 72286ecaa68aSToby Isaac } 72296ecaa68aSToby Isaac else { 72306ecaa68aSToby Isaac newValues = tmpValues; 72316ecaa68aSToby Isaac } 72326ecaa68aSToby Isaac } 72336ecaa68aSToby Isaac 7234d3d1a6afSToby Isaac /* clean up */ 72359566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,maxDof,MPIU_INT,&indices)); 72369566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,maxAnchor*maxDof,MPIU_INT,&newIndices)); 72376ecaa68aSToby Isaac 7238d3d1a6afSToby Isaac if (numFields) { 7239d3d1a6afSToby Isaac for (f = 0; f < numFields; f++) { 72409566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,pointMatOffsets[f][numPoints],MPIU_SCALAR,&pointMat[f])); 72419566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,numPoints+1,MPIU_INT,&pointMatOffsets[f])); 72429566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,numPoints+1,MPIU_INT,&newPointOffsets[f])); 7243d3d1a6afSToby Isaac } 7244d3d1a6afSToby Isaac } 7245d3d1a6afSToby Isaac else { 72469566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,pointMatOffsets[0][numPoints],MPIU_SCALAR,&pointMat[0])); 72479566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,numPoints+1,MPIU_INT,&pointMatOffsets[0])); 72489566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,numPoints+1,MPIU_INT,&newPointOffsets[0])); 7249d3d1a6afSToby Isaac } 72509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS,&anchors)); 7251d3d1a6afSToby Isaac 7252d3d1a6afSToby Isaac /* output */ 72536ecaa68aSToby Isaac if (outPoints) { 7254d3d1a6afSToby Isaac *outPoints = newPoints; 72556ecaa68aSToby Isaac } 72566ecaa68aSToby Isaac else { 72579566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm,2*newNumPoints,MPIU_INT,&newPoints)); 72586ecaa68aSToby Isaac } 725931620726SToby Isaac if (outValues) { 7260d3d1a6afSToby Isaac *outValues = newValues; 72616ecaa68aSToby Isaac } 72626ecaa68aSToby Isaac for (f = 0; f <= numFields; f++) { 7263d3d1a6afSToby Isaac offsets[f] = newOffsets[f]; 7264d3d1a6afSToby Isaac } 7265d3d1a6afSToby Isaac PetscFunctionReturn(0); 7266d3d1a6afSToby Isaac } 7267d3d1a6afSToby Isaac 72684a1e0b3eSMatthew G. Knepley /*@C 726971f0bbf9SMatthew G. Knepley DMPlexGetClosureIndices - Gets the global dof indices associated with the closure of the given point within the provided sections. 72707cd05799SMatthew G. Knepley 72717cd05799SMatthew G. Knepley Not collective 72727cd05799SMatthew G. Knepley 72737cd05799SMatthew G. Knepley Input Parameters: 72747cd05799SMatthew G. Knepley + dm - The DM 727571f0bbf9SMatthew G. Knepley . section - The PetscSection describing the points (a local section) 727671f0bbf9SMatthew G. Knepley . idxSection - The PetscSection from which to obtain indices (may be local or global) 727771f0bbf9SMatthew G. Knepley . point - The point defining the closure 727871f0bbf9SMatthew G. Knepley - useClPerm - Use the closure point permutation if available 72797cd05799SMatthew G. Knepley 728071f0bbf9SMatthew G. Knepley Output Parameters: 728171f0bbf9SMatthew G. Knepley + numIndices - The number of dof indices in the closure of point with the input sections 728271f0bbf9SMatthew G. Knepley . indices - The dof indices 728371f0bbf9SMatthew G. Knepley . outOffsets - Array to write the field offsets into, or NULL 728471f0bbf9SMatthew G. Knepley - values - The input values, which may be modified if sign flips are induced by the point symmetries, or NULL 72857cd05799SMatthew G. Knepley 728636fa2b79SJed Brown Notes: 728736fa2b79SJed Brown Must call DMPlexRestoreClosureIndices() to free allocated memory 728836fa2b79SJed Brown 728936fa2b79SJed Brown If idxSection is global, any constrained dofs (see DMAddBoundary(), for example) will get negative indices. The value 729036fa2b79SJed Brown of those indices is not significant. If idxSection is local, the constrained dofs will yield the involution -(idx+1) 729136fa2b79SJed Brown of their index in a local vector. A caller who does not wish to distinguish those points may recover the nonnegative 729236fa2b79SJed Brown indices via involution, -(-(idx+1)+1)==idx. Local indices are provided when idxSection == section, otherwise global 729336fa2b79SJed Brown indices (with the above semantics) are implied. 72947cd05799SMatthew G. Knepley 72957cd05799SMatthew G. Knepley Level: advanced 72967cd05799SMatthew G. Knepley 7297db781477SPatrick Sanan .seealso `DMPlexRestoreClosureIndices()`, `DMPlexVecGetClosure()`, `DMPlexMatSetClosure()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 72984a1e0b3eSMatthew G. Knepley @*/ 729971f0bbf9SMatthew G. Knepley PetscErrorCode DMPlexGetClosureIndices(DM dm, PetscSection section, PetscSection idxSection, PetscInt point, PetscBool useClPerm, 730071f0bbf9SMatthew G. Knepley PetscInt *numIndices, PetscInt *indices[], PetscInt outOffsets[], PetscScalar *values[]) 73017773e69fSMatthew G. Knepley { 730271f0bbf9SMatthew G. Knepley /* Closure ordering */ 73037773e69fSMatthew G. Knepley PetscSection clSection; 73047773e69fSMatthew G. Knepley IS clPoints; 730571f0bbf9SMatthew G. Knepley const PetscInt *clp; 730671f0bbf9SMatthew G. Knepley PetscInt *points; 730771f0bbf9SMatthew G. Knepley const PetscInt *clperm = NULL; 730871f0bbf9SMatthew G. Knepley /* Dof permutation and sign flips */ 73094acb8e1eSToby Isaac const PetscInt **perms[32] = {NULL}; 731071f0bbf9SMatthew G. Knepley const PetscScalar **flips[32] = {NULL}; 731171f0bbf9SMatthew G. Knepley PetscScalar *valCopy = NULL; 731271f0bbf9SMatthew G. Knepley /* Hanging node constraints */ 731371f0bbf9SMatthew G. Knepley PetscInt *pointsC = NULL; 731471f0bbf9SMatthew G. Knepley PetscScalar *valuesC = NULL; 731571f0bbf9SMatthew G. Knepley PetscInt NclC, NiC; 731671f0bbf9SMatthew G. Knepley 731771f0bbf9SMatthew G. Knepley PetscInt *idx; 731871f0bbf9SMatthew G. Knepley PetscInt Nf, Ncl, Ni = 0, offsets[32], p, f; 731971f0bbf9SMatthew G. Knepley PetscBool isLocal = (section == idxSection) ? PETSC_TRUE : PETSC_FALSE; 73207773e69fSMatthew G. Knepley 732171f0bbf9SMatthew G. Knepley PetscFunctionBeginHot; 73227773e69fSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73237773e69fSMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 732436fa2b79SJed Brown PetscValidHeaderSpecific(idxSection, PETSC_SECTION_CLASSID, 3); 7325dadcf809SJacob Faibussowitsch if (numIndices) PetscValidIntPointer(numIndices, 6); 732671f0bbf9SMatthew G. Knepley if (indices) PetscValidPointer(indices, 7); 7327dadcf809SJacob Faibussowitsch if (outOffsets) PetscValidIntPointer(outOffsets, 8); 732871f0bbf9SMatthew G. Knepley if (values) PetscValidPointer(values, 9); 73299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 733063a3b9bcSJacob Faibussowitsch PetscCheck(Nf <= 31,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Number of fields %" PetscInt_FMT " limited to 31", Nf); 73319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(offsets, 32)); 733271f0bbf9SMatthew G. Knepley /* 1) Get points in closure */ 73339566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm, section, point, &Ncl, &points, &clSection, &clPoints, &clp)); 7334c459fbc1SJed Brown if (useClPerm) { 7335c459fbc1SJed Brown PetscInt depth, clsize; 73369566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &depth)); 7337c459fbc1SJed Brown for (clsize=0,p=0; p<Ncl; p++) { 7338c459fbc1SJed Brown PetscInt dof; 73399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[2*p], &dof)); 7340c459fbc1SJed Brown clsize += dof; 7341c459fbc1SJed Brown } 73429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetClosureInversePermutation_Internal(section, (PetscObject) dm, depth, clsize, &clperm)); 7343c459fbc1SJed Brown } 734471f0bbf9SMatthew G. Knepley /* 2) Get number of indices on these points and field offsets from section */ 734571f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl*2; p += 2) { 73467773e69fSMatthew G. Knepley PetscInt dof, fdof; 73477773e69fSMatthew G. Knepley 73489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, points[p], &dof)); 73497773e69fSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 73509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, points[p], f, &fdof)); 73517773e69fSMatthew G. Knepley offsets[f+1] += fdof; 73527773e69fSMatthew G. Knepley } 735371f0bbf9SMatthew G. Knepley Ni += dof; 73547773e69fSMatthew G. Knepley } 73557773e69fSMatthew G. Knepley for (f = 1; f < Nf; ++f) offsets[f+1] += offsets[f]; 73561dca8a05SBarry Smith PetscCheck(!Nf || offsets[Nf] == Ni,PetscObjectComm((PetscObject) dm), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, offsets[Nf], Ni); 735771f0bbf9SMatthew G. Knepley /* 3) Get symmetries and sign flips. Apply sign flips to values if passed in (only works for square values matrix) */ 735871f0bbf9SMatthew G. Knepley for (f = 0; f < PetscMax(1, Nf); ++f) { 73599566063dSJacob Faibussowitsch if (Nf) PetscCall(PetscSectionGetFieldPointSyms(section, f, Ncl, points, &perms[f], &flips[f])); 73609566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetPointSyms(section, Ncl, points, &perms[f], &flips[f])); 736171f0bbf9SMatthew G. Knepley /* may need to apply sign changes to the element matrix */ 736271f0bbf9SMatthew G. Knepley if (values && flips[f]) { 736371f0bbf9SMatthew G. Knepley PetscInt foffset = offsets[f]; 73646ecaa68aSToby Isaac 736571f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl; ++p) { 736671f0bbf9SMatthew G. Knepley PetscInt pnt = points[2*p], fdof; 736771f0bbf9SMatthew G. Knepley const PetscScalar *flip = flips[f] ? flips[f][p] : NULL; 736871f0bbf9SMatthew G. Knepley 73699566063dSJacob Faibussowitsch if (!Nf) PetscCall(PetscSectionGetDof(section, pnt, &fdof)); 73709566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetFieldDof(section, pnt, f, &fdof)); 737171f0bbf9SMatthew G. Knepley if (flip) { 737271f0bbf9SMatthew G. Knepley PetscInt i, j, k; 737371f0bbf9SMatthew G. Knepley 737471f0bbf9SMatthew G. Knepley if (!valCopy) { 73759566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Ni*Ni, MPIU_SCALAR, &valCopy)); 737671f0bbf9SMatthew G. Knepley for (j = 0; j < Ni * Ni; ++j) valCopy[j] = (*values)[j]; 737771f0bbf9SMatthew G. Knepley *values = valCopy; 737871f0bbf9SMatthew G. Knepley } 737971f0bbf9SMatthew G. Knepley for (i = 0; i < fdof; ++i) { 738071f0bbf9SMatthew G. Knepley PetscScalar fval = flip[i]; 738171f0bbf9SMatthew G. Knepley 738271f0bbf9SMatthew G. Knepley for (k = 0; k < Ni; ++k) { 738371f0bbf9SMatthew G. Knepley valCopy[Ni * (foffset + i) + k] *= fval; 738471f0bbf9SMatthew G. Knepley valCopy[Ni * k + (foffset + i)] *= fval; 73856ecaa68aSToby Isaac } 73866ecaa68aSToby Isaac } 738771f0bbf9SMatthew G. Knepley } 738871f0bbf9SMatthew G. Knepley foffset += fdof; 738971f0bbf9SMatthew G. Knepley } 739071f0bbf9SMatthew G. Knepley } 739171f0bbf9SMatthew G. Knepley } 739271f0bbf9SMatthew G. Knepley /* 4) Apply hanging node constraints. Get new symmetries and replace all storage with constrained storage */ 73939566063dSJacob Faibussowitsch PetscCall(DMPlexAnchorsModifyMat(dm, section, Ncl, Ni, points, perms, values ? *values : NULL, &NclC, &NiC, &pointsC, values ? &valuesC : NULL, offsets, PETSC_TRUE)); 739471f0bbf9SMatthew G. Knepley if (NclC) { 73959566063dSJacob Faibussowitsch if (valCopy) PetscCall(DMRestoreWorkArray(dm, Ni*Ni, MPIU_SCALAR, &valCopy)); 739671f0bbf9SMatthew G. Knepley for (f = 0; f < PetscMax(1, Nf); ++f) { 73979566063dSJacob Faibussowitsch if (Nf) PetscCall(PetscSectionRestoreFieldPointSyms(section, f, Ncl, points, &perms[f], &flips[f])); 73989566063dSJacob Faibussowitsch else PetscCall(PetscSectionRestorePointSyms(section, Ncl, points, &perms[f], &flips[f])); 739971f0bbf9SMatthew G. Knepley } 740071f0bbf9SMatthew G. Knepley for (f = 0; f < PetscMax(1, Nf); ++f) { 74019566063dSJacob Faibussowitsch if (Nf) PetscCall(PetscSectionGetFieldPointSyms(section, f, NclC, pointsC, &perms[f], &flips[f])); 74029566063dSJacob Faibussowitsch else PetscCall(PetscSectionGetPointSyms(section, NclC, pointsC, &perms[f], &flips[f])); 740371f0bbf9SMatthew G. Knepley } 74049566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, section, point, &Ncl, &points, &clSection, &clPoints, &clp)); 740571f0bbf9SMatthew G. Knepley Ncl = NclC; 740671f0bbf9SMatthew G. Knepley Ni = NiC; 740771f0bbf9SMatthew G. Knepley points = pointsC; 740871f0bbf9SMatthew G. Knepley if (values) *values = valuesC; 740971f0bbf9SMatthew G. Knepley } 741071f0bbf9SMatthew G. Knepley /* 5) Calculate indices */ 74119566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Ni, MPIU_INT, &idx)); 741271f0bbf9SMatthew G. Knepley if (Nf) { 741371f0bbf9SMatthew G. Knepley PetscInt idxOff; 741471f0bbf9SMatthew G. Knepley PetscBool useFieldOffsets; 741571f0bbf9SMatthew G. Knepley 741671f0bbf9SMatthew G. Knepley if (outOffsets) {for (f = 0; f <= Nf; f++) outOffsets[f] = offsets[f];} 74179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetUseFieldOffsets(idxSection, &useFieldOffsets)); 741871f0bbf9SMatthew G. Knepley if (useFieldOffsets) { 741971f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl; ++p) { 742071f0bbf9SMatthew G. Knepley const PetscInt pnt = points[p*2]; 742171f0bbf9SMatthew G. Knepley 74229566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFieldsSplit_Internal(section, idxSection, pnt, offsets, perms, p, clperm, idx)); 74237773e69fSMatthew G. Knepley } 74247773e69fSMatthew G. Knepley } else { 742571f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl; ++p) { 742671f0bbf9SMatthew G. Knepley const PetscInt pnt = points[p*2]; 742771f0bbf9SMatthew G. Knepley 74289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(idxSection, pnt, &idxOff)); 742971f0bbf9SMatthew G. Knepley /* Note that we pass a local section even though we're using global offsets. This is because global sections do 743071f0bbf9SMatthew G. Knepley * not (at the time of this writing) have fields set. They probably should, in which case we would pass the 743171f0bbf9SMatthew G. Knepley * global section. */ 74329566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(section, isLocal, pnt, idxOff < 0 ? -(idxOff+1) : idxOff, offsets, PETSC_FALSE, perms, p, clperm, idx)); 743371f0bbf9SMatthew G. Knepley } 743471f0bbf9SMatthew G. Knepley } 743571f0bbf9SMatthew G. Knepley } else { 743671f0bbf9SMatthew G. Knepley PetscInt off = 0, idxOff; 743771f0bbf9SMatthew G. Knepley 743871f0bbf9SMatthew G. Knepley for (p = 0; p < Ncl; ++p) { 743971f0bbf9SMatthew G. Knepley const PetscInt pnt = points[p*2]; 74404acb8e1eSToby Isaac const PetscInt *perm = perms[0] ? perms[0][p] : NULL; 74414acb8e1eSToby Isaac 74429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(idxSection, pnt, &idxOff)); 744371f0bbf9SMatthew G. Knepley /* Note that we pass a local section even though we're using global offsets. This is because global sections do 744471f0bbf9SMatthew G. Knepley * not (at the time of this writing) have fields set. They probably should, in which case we would pass the global section. */ 74459566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(section, isLocal, pnt, idxOff < 0 ? -(idxOff+1) : idxOff, &off, PETSC_FALSE, perm, clperm, idx)); 74467773e69fSMatthew G. Knepley } 74477773e69fSMatthew G. Knepley } 744871f0bbf9SMatthew G. Knepley /* 6) Cleanup */ 744971f0bbf9SMatthew G. Knepley for (f = 0; f < PetscMax(1, Nf); ++f) { 74509566063dSJacob Faibussowitsch if (Nf) PetscCall(PetscSectionRestoreFieldPointSyms(section, f, Ncl, points, &perms[f], &flips[f])); 74519566063dSJacob Faibussowitsch else PetscCall(PetscSectionRestorePointSyms(section, Ncl, points, &perms[f], &flips[f])); 74524acb8e1eSToby Isaac } 745371f0bbf9SMatthew G. Knepley if (NclC) { 74549566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, NclC*2, MPIU_INT, &pointsC)); 74557773e69fSMatthew G. Knepley } else { 74569566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, section, point, &Ncl, &points, &clSection, &clPoints, &clp)); 74577773e69fSMatthew G. Knepley } 745871f0bbf9SMatthew G. Knepley 745971f0bbf9SMatthew G. Knepley if (numIndices) *numIndices = Ni; 746071f0bbf9SMatthew G. Knepley if (indices) *indices = idx; 74617773e69fSMatthew G. Knepley PetscFunctionReturn(0); 74627773e69fSMatthew G. Knepley } 74637773e69fSMatthew G. Knepley 74647cd05799SMatthew G. Knepley /*@C 746571f0bbf9SMatthew G. Knepley DMPlexRestoreClosureIndices - Restores the global dof indices associated with the closure of the given point within the provided sections. 74667cd05799SMatthew G. Knepley 74677cd05799SMatthew G. Knepley Not collective 74687cd05799SMatthew G. Knepley 74697cd05799SMatthew G. Knepley Input Parameters: 74707cd05799SMatthew G. Knepley + dm - The DM 747171f0bbf9SMatthew G. Knepley . section - The PetscSection describing the points (a local section) 747271f0bbf9SMatthew G. Knepley . idxSection - The PetscSection from which to obtain indices (may be local or global) 747371f0bbf9SMatthew G. Knepley . point - The point defining the closure 747471f0bbf9SMatthew G. Knepley - useClPerm - Use the closure point permutation if available 747571f0bbf9SMatthew G. Knepley 747671f0bbf9SMatthew G. Knepley Output Parameters: 747771f0bbf9SMatthew G. Knepley + numIndices - The number of dof indices in the closure of point with the input sections 747871f0bbf9SMatthew G. Knepley . indices - The dof indices 747971f0bbf9SMatthew G. Knepley . outOffsets - Array to write the field offsets into, or NULL 748071f0bbf9SMatthew G. Knepley - values - The input values, which may be modified if sign flips are induced by the point symmetries, or NULL 748171f0bbf9SMatthew G. Knepley 748271f0bbf9SMatthew G. Knepley Notes: 748371f0bbf9SMatthew G. Knepley If values were modified, the user is responsible for calling DMRestoreWorkArray(dm, 0, MPIU_SCALAR, &values). 748471f0bbf9SMatthew G. Knepley 748571f0bbf9SMatthew G. Knepley If idxSection is global, any constrained dofs (see DMAddBoundary(), for example) will get negative indices. The value 748671f0bbf9SMatthew G. Knepley of those indices is not significant. If idxSection is local, the constrained dofs will yield the involution -(idx+1) 748771f0bbf9SMatthew G. Knepley of their index in a local vector. A caller who does not wish to distinguish those points may recover the nonnegative 748871f0bbf9SMatthew G. Knepley indices via involution, -(-(idx+1)+1)==idx. Local indices are provided when idxSection == section, otherwise global 748971f0bbf9SMatthew G. Knepley indices (with the above semantics) are implied. 74907cd05799SMatthew G. Knepley 74917cd05799SMatthew G. Knepley Level: advanced 74927cd05799SMatthew G. Knepley 7493db781477SPatrick Sanan .seealso `DMPlexGetClosureIndices()`, `DMPlexVecGetClosure()`, `DMPlexMatSetClosure()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 74947cd05799SMatthew G. Knepley @*/ 749571f0bbf9SMatthew G. Knepley PetscErrorCode DMPlexRestoreClosureIndices(DM dm, PetscSection section, PetscSection idxSection, PetscInt point, PetscBool useClPerm, 749671f0bbf9SMatthew G. Knepley PetscInt *numIndices, PetscInt *indices[], PetscInt outOffsets[], PetscScalar *values[]) 74977773e69fSMatthew G. Knepley { 74987773e69fSMatthew G. Knepley PetscFunctionBegin; 74997773e69fSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7500064a246eSJacob Faibussowitsch PetscValidPointer(indices, 7); 75019566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_INT, indices)); 75027773e69fSMatthew G. Knepley PetscFunctionReturn(0); 75037773e69fSMatthew G. Knepley } 75047773e69fSMatthew G. Knepley 75057f5d1fdeSMatthew G. Knepley /*@C 75067f5d1fdeSMatthew G. Knepley DMPlexMatSetClosure - Set an array of the values on the closure of 'point' 75077f5d1fdeSMatthew G. Knepley 75087f5d1fdeSMatthew G. Knepley Not collective 75097f5d1fdeSMatthew G. Knepley 75107f5d1fdeSMatthew G. Knepley Input Parameters: 75117f5d1fdeSMatthew G. Knepley + dm - The DM 7512ebd6d717SJed Brown . section - The section describing the layout in v, or NULL to use the default section 7513ebd6d717SJed Brown . globalSection - The section describing the layout in v, or NULL to use the default global section 75147f5d1fdeSMatthew G. Knepley . A - The matrix 7515eaf898f9SPatrick Sanan . point - The point in the DM 75167f5d1fdeSMatthew G. Knepley . values - The array of values 75177f5d1fdeSMatthew G. Knepley - mode - The insert mode, where INSERT_ALL_VALUES and ADD_ALL_VALUES also overwrite boundary conditions 75187f5d1fdeSMatthew G. Knepley 75197f5d1fdeSMatthew G. Knepley Fortran Notes: 75207f5d1fdeSMatthew G. Knepley This routine is only available in Fortran 90, and you must include petsc.h90 in your code. 75217f5d1fdeSMatthew G. Knepley 75227f5d1fdeSMatthew G. Knepley Level: intermediate 75237f5d1fdeSMatthew G. Knepley 7524db781477SPatrick Sanan .seealso `DMPlexMatSetClosureGeneral()`, `DMPlexVecGetClosure()`, `DMPlexVecSetClosure()` 75257f5d1fdeSMatthew G. Knepley @*/ 75267c1f9639SMatthew G Knepley PetscErrorCode DMPlexMatSetClosure(DM dm, PetscSection section, PetscSection globalSection, Mat A, PetscInt point, const PetscScalar values[], InsertMode mode) 7527552f7358SJed Brown { 7528552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 7529552f7358SJed Brown PetscInt *indices; 753071f0bbf9SMatthew G. Knepley PetscInt numIndices; 753171f0bbf9SMatthew G. Knepley const PetscScalar *valuesOrig = values; 7532552f7358SJed Brown PetscErrorCode ierr; 7533552f7358SJed Brown 7534552f7358SJed Brown PetscFunctionBegin; 7535552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 75369566063dSJacob Faibussowitsch if (!section) PetscCall(DMGetLocalSection(dm, §ion)); 75373dc93601SMatthew G. Knepley PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 75389566063dSJacob Faibussowitsch if (!globalSection) PetscCall(DMGetGlobalSection(dm, &globalSection)); 75393dc93601SMatthew G. Knepley PetscValidHeaderSpecific(globalSection, PETSC_SECTION_CLASSID, 3); 75403dc93601SMatthew G. Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 4); 7541552f7358SJed Brown 75429566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dm, section, globalSection, point, PETSC_TRUE, &numIndices, &indices, NULL, (PetscScalar **) &values)); 75430d644c17SKarl Rupp 75449566063dSJacob Faibussowitsch if (mesh->printSetValues) PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDOUT_SELF, A, point, numIndices, indices, 0, NULL, values)); 7545d0609cedSBarry Smith /* TODO: fix this code to not use error codes as handle-able exceptions! */ 75464a1e0b3eSMatthew G. Knepley ierr = MatSetValues(A, numIndices, indices, numIndices, indices, values, mode); 7547552f7358SJed Brown if (ierr) { 7548552f7358SJed Brown PetscMPIInt rank; 7549552f7358SJed Brown 75509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 75519566063dSJacob Faibussowitsch PetscCall((*PetscErrorPrintf)("[%d]ERROR in DMPlexMatSetClosure\n", rank)); 75529566063dSJacob Faibussowitsch PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDERR_SELF, A, point, numIndices, indices, 0, NULL, values)); 75539566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dm, section, globalSection, point, PETSC_TRUE, &numIndices, &indices, NULL, (PetscScalar **) &values)); 75549566063dSJacob Faibussowitsch if (values != valuesOrig) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, &values)); 7555c3e24edfSBarry Smith SETERRQ(PetscObjectComm((PetscObject)dm),ierr,"Not possible to set matrix values"); 7556552f7358SJed Brown } 75574a1e0b3eSMatthew G. Knepley if (mesh->printFEM > 1) { 75584a1e0b3eSMatthew G. Knepley PetscInt i; 75599566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " Indices:")); 756063a3b9bcSJacob Faibussowitsch for (i = 0; i < numIndices; ++i) PetscCall(PetscPrintf(PETSC_COMM_SELF, " %" PetscInt_FMT, indices[i])); 75619566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 75624a1e0b3eSMatthew G. Knepley } 756371f0bbf9SMatthew G. Knepley 75649566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dm, section, globalSection, point, PETSC_TRUE, &numIndices, &indices, NULL, (PetscScalar **) &values)); 75659566063dSJacob Faibussowitsch if (values != valuesOrig) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, &values)); 756671f0bbf9SMatthew G. Knepley PetscFunctionReturn(0); 75674acb8e1eSToby Isaac } 756871f0bbf9SMatthew G. Knepley 75694a1e0b3eSMatthew G. Knepley /*@C 75704a1e0b3eSMatthew G. Knepley DMPlexMatSetClosure - Set an array of the values on the closure of 'point' using a different row and column section 75714a1e0b3eSMatthew G. Knepley 75724a1e0b3eSMatthew G. Knepley Not collective 75734a1e0b3eSMatthew G. Knepley 75744a1e0b3eSMatthew G. Knepley Input Parameters: 75754a1e0b3eSMatthew G. Knepley + dmRow - The DM for the row fields 75764a1e0b3eSMatthew G. Knepley . sectionRow - The section describing the layout, or NULL to use the default section in dmRow 75774a1e0b3eSMatthew G. Knepley . globalSectionRow - The section describing the layout, or NULL to use the default global section in dmRow 75784a1e0b3eSMatthew G. Knepley . dmCol - The DM for the column fields 75794a1e0b3eSMatthew G. Knepley . sectionCol - The section describing the layout, or NULL to use the default section in dmCol 75804a1e0b3eSMatthew G. Knepley . globalSectionCol - The section describing the layout, or NULL to use the default global section in dmCol 75814a1e0b3eSMatthew G. Knepley . A - The matrix 75824a1e0b3eSMatthew G. Knepley . point - The point in the DMs 75834a1e0b3eSMatthew G. Knepley . values - The array of values 75844a1e0b3eSMatthew G. Knepley - mode - The insert mode, where INSERT_ALL_VALUES and ADD_ALL_VALUES also overwrite boundary conditions 75854a1e0b3eSMatthew G. Knepley 75864a1e0b3eSMatthew G. Knepley Level: intermediate 75874a1e0b3eSMatthew G. Knepley 7588db781477SPatrick Sanan .seealso `DMPlexMatSetClosure()`, `DMPlexVecGetClosure()`, `DMPlexVecSetClosure()` 75894a1e0b3eSMatthew G. Knepley @*/ 759071f0bbf9SMatthew G. Knepley PetscErrorCode DMPlexMatSetClosureGeneral(DM dmRow, PetscSection sectionRow, PetscSection globalSectionRow, DM dmCol, PetscSection sectionCol, PetscSection globalSectionCol, Mat A, PetscInt point, const PetscScalar values[], InsertMode mode) 759171f0bbf9SMatthew G. Knepley { 759271f0bbf9SMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dmRow->data; 759371f0bbf9SMatthew G. Knepley PetscInt *indicesRow, *indicesCol; 759471f0bbf9SMatthew G. Knepley PetscInt numIndicesRow, numIndicesCol; 759571f0bbf9SMatthew G. Knepley const PetscScalar *valuesOrig = values; 759671f0bbf9SMatthew G. Knepley PetscErrorCode ierr; 759771f0bbf9SMatthew G. Knepley 759871f0bbf9SMatthew G. Knepley PetscFunctionBegin; 759971f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(dmRow, DM_CLASSID, 1); 76009566063dSJacob Faibussowitsch if (!sectionRow) PetscCall(DMGetLocalSection(dmRow, §ionRow)); 760171f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(sectionRow, PETSC_SECTION_CLASSID, 2); 76029566063dSJacob Faibussowitsch if (!globalSectionRow) PetscCall(DMGetGlobalSection(dmRow, &globalSectionRow)); 760371f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(globalSectionRow, PETSC_SECTION_CLASSID, 3); 760471f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(dmCol, DM_CLASSID, 4); 76059566063dSJacob Faibussowitsch if (!sectionCol) PetscCall(DMGetLocalSection(dmCol, §ionCol)); 760671f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(sectionCol, PETSC_SECTION_CLASSID, 5); 76079566063dSJacob Faibussowitsch if (!globalSectionCol) PetscCall(DMGetGlobalSection(dmCol, &globalSectionCol)); 760871f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(globalSectionCol, PETSC_SECTION_CLASSID, 6); 760971f0bbf9SMatthew G. Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 7); 761071f0bbf9SMatthew G. Knepley 76119566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmRow, sectionRow, globalSectionRow, point, PETSC_TRUE, &numIndicesRow, &indicesRow, NULL, (PetscScalar **) &values)); 76129566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmCol, sectionCol, globalSectionCol, point, PETSC_TRUE, &numIndicesCol, &indicesCol, NULL, (PetscScalar **) &values)); 761371f0bbf9SMatthew G. Knepley 76149566063dSJacob Faibussowitsch if (mesh->printSetValues) PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDOUT_SELF, A, point, numIndicesRow, indicesRow, numIndicesCol, indicesCol, values)); 7615d0609cedSBarry Smith /* TODO: fix this code to not use error codes as handle-able exceptions! */ 76164a1e0b3eSMatthew G. Knepley ierr = MatSetValues(A, numIndicesRow, indicesRow, numIndicesCol, indicesCol, values, mode); 761771f0bbf9SMatthew G. Knepley if (ierr) { 761871f0bbf9SMatthew G. Knepley PetscMPIInt rank; 761971f0bbf9SMatthew G. Knepley 76209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 76219566063dSJacob Faibussowitsch PetscCall((*PetscErrorPrintf)("[%d]ERROR in DMPlexMatSetClosure\n", rank)); 76229566063dSJacob Faibussowitsch PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDERR_SELF, A, point, numIndicesRow, indicesRow, numIndicesCol, indicesCol, values)); 76239566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmRow, sectionRow, globalSectionRow, point, PETSC_TRUE, &numIndicesRow, &indicesRow, NULL, (PetscScalar **) &values)); 76249566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmCol, sectionCol, globalSectionCol, point, PETSC_TRUE, &numIndicesCol, &indicesRow, NULL, (PetscScalar **) &values)); 76259566063dSJacob Faibussowitsch if (values != valuesOrig) PetscCall(DMRestoreWorkArray(dmRow, 0, MPIU_SCALAR, &values)); 7626d3d1a6afSToby Isaac } 762771f0bbf9SMatthew G. Knepley 76289566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmRow, sectionRow, globalSectionRow, point, PETSC_TRUE, &numIndicesRow, &indicesRow, NULL, (PetscScalar **) &values)); 76299566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmCol, sectionCol, globalSectionCol, point, PETSC_TRUE, &numIndicesCol, &indicesCol, NULL, (PetscScalar **) &values)); 76309566063dSJacob Faibussowitsch if (values != valuesOrig) PetscCall(DMRestoreWorkArray(dmRow, 0, MPIU_SCALAR, &values)); 7631552f7358SJed Brown PetscFunctionReturn(0); 7632552f7358SJed Brown } 7633552f7358SJed Brown 7634de41b84cSMatthew G. Knepley PetscErrorCode DMPlexMatSetClosureRefined(DM dmf, PetscSection fsection, PetscSection globalFSection, DM dmc, PetscSection csection, PetscSection globalCSection, Mat A, PetscInt point, const PetscScalar values[], InsertMode mode) 7635de41b84cSMatthew G. Knepley { 7636de41b84cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dmf->data; 7637de41b84cSMatthew G. Knepley PetscInt *fpoints = NULL, *ftotpoints = NULL; 7638de41b84cSMatthew G. Knepley PetscInt *cpoints = NULL; 7639de41b84cSMatthew G. Knepley PetscInt *findices, *cindices; 764017c0192bSMatthew G. Knepley const PetscInt *fclperm = NULL, *cclperm = NULL; /* Closure permutations cannot work here */ 7641de41b84cSMatthew G. Knepley PetscInt foffsets[32], coffsets[32]; 7642412e9a14SMatthew G. Knepley DMPolytopeType ct; 76434ca5e9f5SMatthew G. Knepley PetscInt numFields, numSubcells, maxFPoints, numFPoints, numCPoints, numFIndices, numCIndices, dof, off, globalOff, pStart, pEnd, p, q, r, s, f; 7644de41b84cSMatthew G. Knepley PetscErrorCode ierr; 7645de41b84cSMatthew G. Knepley 7646de41b84cSMatthew G. Knepley PetscFunctionBegin; 7647de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 1); 7648de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 4); 76499566063dSJacob Faibussowitsch if (!fsection) PetscCall(DMGetLocalSection(dmf, &fsection)); 7650de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(fsection, PETSC_SECTION_CLASSID, 2); 76519566063dSJacob Faibussowitsch if (!csection) PetscCall(DMGetLocalSection(dmc, &csection)); 7652de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(csection, PETSC_SECTION_CLASSID, 5); 76539566063dSJacob Faibussowitsch if (!globalFSection) PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 7654de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(globalFSection, PETSC_SECTION_CLASSID, 3); 76559566063dSJacob Faibussowitsch if (!globalCSection) PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 7656de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(globalCSection, PETSC_SECTION_CLASSID, 6); 7657de41b84cSMatthew G. Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 7); 76589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &numFields)); 765963a3b9bcSJacob Faibussowitsch PetscCheck(numFields <= 31,PetscObjectComm((PetscObject)dmf), PETSC_ERR_ARG_OUTOFRANGE, "Number of fields %" PetscInt_FMT " limited to 31", numFields); 76609566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(foffsets, 32)); 76619566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(coffsets, 32)); 7662de41b84cSMatthew G. Knepley /* Column indices */ 76639566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dmc, point, PETSC_TRUE, &numCPoints, &cpoints)); 76644ca5e9f5SMatthew G. Knepley maxFPoints = numCPoints; 7665de41b84cSMatthew G. Knepley /* Compress out points not in the section */ 7666de41b84cSMatthew G. Knepley /* TODO: Squeeze out points with 0 dof as well */ 76679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(csection, &pStart, &pEnd)); 7668de41b84cSMatthew G. Knepley for (p = 0, q = 0; p < numCPoints*2; p += 2) { 7669de41b84cSMatthew G. Knepley if ((cpoints[p] >= pStart) && (cpoints[p] < pEnd)) { 7670de41b84cSMatthew G. Knepley cpoints[q*2] = cpoints[p]; 7671de41b84cSMatthew G. Knepley cpoints[q*2+1] = cpoints[p+1]; 7672de41b84cSMatthew G. Knepley ++q; 7673de41b84cSMatthew G. Knepley } 7674de41b84cSMatthew G. Knepley } 7675de41b84cSMatthew G. Knepley numCPoints = q; 7676de41b84cSMatthew G. Knepley for (p = 0, numCIndices = 0; p < numCPoints*2; p += 2) { 7677de41b84cSMatthew G. Knepley PetscInt fdof; 7678de41b84cSMatthew G. Knepley 76799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(csection, cpoints[p], &dof)); 76804ca5e9f5SMatthew G. Knepley if (!dof) continue; 7681de41b84cSMatthew G. Knepley for (f = 0; f < numFields; ++f) { 76829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(csection, cpoints[p], f, &fdof)); 7683de41b84cSMatthew G. Knepley coffsets[f+1] += fdof; 7684de41b84cSMatthew G. Knepley } 7685de41b84cSMatthew G. Knepley numCIndices += dof; 7686de41b84cSMatthew G. Knepley } 7687de41b84cSMatthew G. Knepley for (f = 1; f < numFields; ++f) coffsets[f+1] += coffsets[f]; 7688de41b84cSMatthew G. Knepley /* Row indices */ 76899566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dmc, point, &ct)); 7690412e9a14SMatthew G. Knepley { 7691012bc364SMatthew G. Knepley DMPlexTransform tr; 7692012bc364SMatthew G. Knepley DMPolytopeType *rct; 7693012bc364SMatthew G. Knepley PetscInt *rsize, *rcone, *rornt, Nt; 7694012bc364SMatthew G. Knepley 76959566063dSJacob Faibussowitsch PetscCall(DMPlexTransformCreate(PETSC_COMM_SELF, &tr)); 76969566063dSJacob Faibussowitsch PetscCall(DMPlexTransformSetType(tr, DMPLEXREFINEREGULAR)); 76979566063dSJacob Faibussowitsch PetscCall(DMPlexTransformCellTransform(tr, ct, point, NULL, &Nt, &rct, &rsize, &rcone, &rornt)); 7698012bc364SMatthew G. Knepley numSubcells = rsize[Nt-1]; 76999566063dSJacob Faibussowitsch PetscCall(DMPlexTransformDestroy(&tr)); 7700412e9a14SMatthew G. Knepley } 77019566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmf, maxFPoints*2*numSubcells, MPIU_INT, &ftotpoints)); 7702de41b84cSMatthew G. Knepley for (r = 0, q = 0; r < numSubcells; ++r) { 7703de41b84cSMatthew G. Knepley /* TODO Map from coarse to fine cells */ 77049566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dmf, point*numSubcells + r, PETSC_TRUE, &numFPoints, &fpoints)); 7705de41b84cSMatthew G. Knepley /* Compress out points not in the section */ 77069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(fsection, &pStart, &pEnd)); 7707de41b84cSMatthew G. Knepley for (p = 0; p < numFPoints*2; p += 2) { 7708de41b84cSMatthew G. Knepley if ((fpoints[p] >= pStart) && (fpoints[p] < pEnd)) { 77099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(fsection, fpoints[p], &dof)); 77104ca5e9f5SMatthew G. Knepley if (!dof) continue; 77114ca5e9f5SMatthew G. Knepley for (s = 0; s < q; ++s) if (fpoints[p] == ftotpoints[s*2]) break; 77124ca5e9f5SMatthew G. Knepley if (s < q) continue; 7713de41b84cSMatthew G. Knepley ftotpoints[q*2] = fpoints[p]; 7714de41b84cSMatthew G. Knepley ftotpoints[q*2+1] = fpoints[p+1]; 7715de41b84cSMatthew G. Knepley ++q; 7716de41b84cSMatthew G. Knepley } 7717de41b84cSMatthew G. Knepley } 77189566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dmf, point, PETSC_TRUE, &numFPoints, &fpoints)); 7719de41b84cSMatthew G. Knepley } 7720de41b84cSMatthew G. Knepley numFPoints = q; 7721de41b84cSMatthew G. Knepley for (p = 0, numFIndices = 0; p < numFPoints*2; p += 2) { 7722de41b84cSMatthew G. Knepley PetscInt fdof; 7723de41b84cSMatthew G. Knepley 77249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(fsection, ftotpoints[p], &dof)); 77254ca5e9f5SMatthew G. Knepley if (!dof) continue; 7726de41b84cSMatthew G. Knepley for (f = 0; f < numFields; ++f) { 77279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(fsection, ftotpoints[p], f, &fdof)); 7728de41b84cSMatthew G. Knepley foffsets[f+1] += fdof; 7729de41b84cSMatthew G. Knepley } 7730de41b84cSMatthew G. Knepley numFIndices += dof; 7731de41b84cSMatthew G. Knepley } 7732de41b84cSMatthew G. Knepley for (f = 1; f < numFields; ++f) foffsets[f+1] += foffsets[f]; 7733de41b84cSMatthew G. Knepley 77341dca8a05SBarry Smith PetscCheck(!numFields || foffsets[numFields] == numFIndices,PetscObjectComm((PetscObject)dmf), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, foffsets[numFields], numFIndices); 77351dca8a05SBarry Smith PetscCheck(!numFields || coffsets[numFields] == numCIndices,PetscObjectComm((PetscObject)dmc), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, coffsets[numFields], numCIndices); 77369566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmf, numFIndices, MPIU_INT, &findices)); 77379566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmc, numCIndices, MPIU_INT, &cindices)); 7738de41b84cSMatthew G. Knepley if (numFields) { 77394acb8e1eSToby Isaac const PetscInt **permsF[32] = {NULL}; 77404acb8e1eSToby Isaac const PetscInt **permsC[32] = {NULL}; 77414acb8e1eSToby Isaac 77424acb8e1eSToby Isaac for (f = 0; f < numFields; f++) { 77439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(fsection,f,numFPoints,ftotpoints,&permsF[f],NULL)); 77449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(csection,f,numCPoints,cpoints,&permsC[f],NULL)); 7745de41b84cSMatthew G. Knepley } 77464acb8e1eSToby Isaac for (p = 0; p < numFPoints; p++) { 77479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalFSection, ftotpoints[2*p], &globalOff)); 77489566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(fsection, PETSC_FALSE, ftotpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, foffsets, PETSC_FALSE, permsF, p, fclperm, findices)); 77494acb8e1eSToby Isaac } 77504acb8e1eSToby Isaac for (p = 0; p < numCPoints; p++) { 77519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalCSection, cpoints[2*p], &globalOff)); 77529566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(csection, PETSC_FALSE, cpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, coffsets, PETSC_FALSE, permsC, p, cclperm, cindices)); 77534acb8e1eSToby Isaac } 77544acb8e1eSToby Isaac for (f = 0; f < numFields; f++) { 77559566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(fsection,f,numFPoints,ftotpoints,&permsF[f],NULL)); 77569566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(csection,f,numCPoints,cpoints,&permsC[f],NULL)); 7757de41b84cSMatthew G. Knepley } 7758de41b84cSMatthew G. Knepley } else { 77594acb8e1eSToby Isaac const PetscInt **permsF = NULL; 77604acb8e1eSToby Isaac const PetscInt **permsC = NULL; 77614acb8e1eSToby Isaac 77629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(fsection,numFPoints,ftotpoints,&permsF,NULL)); 77639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(csection,numCPoints,cpoints,&permsC,NULL)); 77644acb8e1eSToby Isaac for (p = 0, off = 0; p < numFPoints; p++) { 77654acb8e1eSToby Isaac const PetscInt *perm = permsF ? permsF[p] : NULL; 77664acb8e1eSToby Isaac 77679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalFSection, ftotpoints[2*p], &globalOff)); 77689566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(fsection, PETSC_FALSE, ftotpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, &off, PETSC_FALSE, perm, fclperm, findices)); 7769de41b84cSMatthew G. Knepley } 77704acb8e1eSToby Isaac for (p = 0, off = 0; p < numCPoints; p++) { 77714acb8e1eSToby Isaac const PetscInt *perm = permsC ? permsC[p] : NULL; 77724acb8e1eSToby Isaac 77739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalCSection, cpoints[2*p], &globalOff)); 77749566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(csection, PETSC_FALSE, cpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, &off, PETSC_FALSE, perm, cclperm, cindices)); 7775de41b84cSMatthew G. Knepley } 77769566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(fsection,numFPoints,ftotpoints,&permsF,NULL)); 77779566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(csection,numCPoints,cpoints,&permsC,NULL)); 7778de41b84cSMatthew G. Knepley } 77799566063dSJacob Faibussowitsch if (mesh->printSetValues) PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDOUT_SELF, A, point, numFIndices, findices, numCIndices, cindices, values)); 77804acb8e1eSToby Isaac /* TODO: flips */ 7781d0609cedSBarry Smith /* TODO: fix this code to not use error codes as handle-able exceptions! */ 7782de41b84cSMatthew G. Knepley ierr = MatSetValues(A, numFIndices, findices, numCIndices, cindices, values, mode); 7783de41b84cSMatthew G. Knepley if (ierr) { 7784de41b84cSMatthew G. Knepley PetscMPIInt rank; 7785de41b84cSMatthew G. Knepley 77869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 77879566063dSJacob Faibussowitsch PetscCall((*PetscErrorPrintf)("[%d]ERROR in DMPlexMatSetClosure\n", rank)); 77889566063dSJacob Faibussowitsch PetscCall(DMPlexPrintMatSetValues(PETSC_VIEWER_STDERR_SELF, A, point, numFIndices, findices, numCIndices, cindices, values)); 77899566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmf, numFIndices, MPIU_INT, &findices)); 77909566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmc, numCIndices, MPIU_INT, &cindices)); 7791de41b84cSMatthew G. Knepley } 77929566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmf, numCPoints*2*4, MPIU_INT, &ftotpoints)); 77939566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dmc, point, PETSC_TRUE, &numCPoints, &cpoints)); 77949566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmf, numFIndices, MPIU_INT, &findices)); 77959566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmc, numCIndices, MPIU_INT, &cindices)); 7796de41b84cSMatthew G. Knepley PetscFunctionReturn(0); 7797de41b84cSMatthew G. Knepley } 7798de41b84cSMatthew G. Knepley 77997c927364SMatthew G. Knepley PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM dmf, PetscSection fsection, PetscSection globalFSection, DM dmc, PetscSection csection, PetscSection globalCSection, PetscInt point, PetscInt cindices[], PetscInt findices[]) 78007c927364SMatthew G. Knepley { 78017c927364SMatthew G. Knepley PetscInt *fpoints = NULL, *ftotpoints = NULL; 78027c927364SMatthew G. Knepley PetscInt *cpoints = NULL; 78037c927364SMatthew G. Knepley PetscInt foffsets[32], coffsets[32]; 780417c0192bSMatthew G. Knepley const PetscInt *fclperm = NULL, *cclperm = NULL; /* Closure permutations cannot work here */ 7805412e9a14SMatthew G. Knepley DMPolytopeType ct; 78067c927364SMatthew G. Knepley PetscInt numFields, numSubcells, maxFPoints, numFPoints, numCPoints, numFIndices, numCIndices, dof, off, globalOff, pStart, pEnd, p, q, r, s, f; 78077c927364SMatthew G. Knepley 78087c927364SMatthew G. Knepley PetscFunctionBegin; 78097c927364SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 1); 78107c927364SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 4); 78119566063dSJacob Faibussowitsch if (!fsection) PetscCall(DMGetLocalSection(dmf, &fsection)); 78127c927364SMatthew G. Knepley PetscValidHeaderSpecific(fsection, PETSC_SECTION_CLASSID, 2); 78139566063dSJacob Faibussowitsch if (!csection) PetscCall(DMGetLocalSection(dmc, &csection)); 78147c927364SMatthew G. Knepley PetscValidHeaderSpecific(csection, PETSC_SECTION_CLASSID, 5); 78159566063dSJacob Faibussowitsch if (!globalFSection) PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 78167c927364SMatthew G. Knepley PetscValidHeaderSpecific(globalFSection, PETSC_SECTION_CLASSID, 3); 78179566063dSJacob Faibussowitsch if (!globalCSection) PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 78187c927364SMatthew G. Knepley PetscValidHeaderSpecific(globalCSection, PETSC_SECTION_CLASSID, 6); 78199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &numFields)); 782063a3b9bcSJacob Faibussowitsch PetscCheck(numFields <= 31,PetscObjectComm((PetscObject)dmf), PETSC_ERR_ARG_OUTOFRANGE, "Number of fields %" PetscInt_FMT " limited to 31", numFields); 78219566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(foffsets, 32)); 78229566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(coffsets, 32)); 78237c927364SMatthew G. Knepley /* Column indices */ 78249566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dmc, point, PETSC_TRUE, &numCPoints, &cpoints)); 78257c927364SMatthew G. Knepley maxFPoints = numCPoints; 78267c927364SMatthew G. Knepley /* Compress out points not in the section */ 78277c927364SMatthew G. Knepley /* TODO: Squeeze out points with 0 dof as well */ 78289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(csection, &pStart, &pEnd)); 78297c927364SMatthew G. Knepley for (p = 0, q = 0; p < numCPoints*2; p += 2) { 78307c927364SMatthew G. Knepley if ((cpoints[p] >= pStart) && (cpoints[p] < pEnd)) { 78317c927364SMatthew G. Knepley cpoints[q*2] = cpoints[p]; 78327c927364SMatthew G. Knepley cpoints[q*2+1] = cpoints[p+1]; 78337c927364SMatthew G. Knepley ++q; 78347c927364SMatthew G. Knepley } 78357c927364SMatthew G. Knepley } 78367c927364SMatthew G. Knepley numCPoints = q; 78377c927364SMatthew G. Knepley for (p = 0, numCIndices = 0; p < numCPoints*2; p += 2) { 78387c927364SMatthew G. Knepley PetscInt fdof; 78397c927364SMatthew G. Knepley 78409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(csection, cpoints[p], &dof)); 78417c927364SMatthew G. Knepley if (!dof) continue; 78427c927364SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 78439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(csection, cpoints[p], f, &fdof)); 78447c927364SMatthew G. Knepley coffsets[f+1] += fdof; 78457c927364SMatthew G. Knepley } 78467c927364SMatthew G. Knepley numCIndices += dof; 78477c927364SMatthew G. Knepley } 78487c927364SMatthew G. Knepley for (f = 1; f < numFields; ++f) coffsets[f+1] += coffsets[f]; 78497c927364SMatthew G. Knepley /* Row indices */ 78509566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dmc, point, &ct)); 7851412e9a14SMatthew G. Knepley { 7852012bc364SMatthew G. Knepley DMPlexTransform tr; 7853012bc364SMatthew G. Knepley DMPolytopeType *rct; 7854012bc364SMatthew G. Knepley PetscInt *rsize, *rcone, *rornt, Nt; 7855012bc364SMatthew G. Knepley 78569566063dSJacob Faibussowitsch PetscCall(DMPlexTransformCreate(PETSC_COMM_SELF, &tr)); 78579566063dSJacob Faibussowitsch PetscCall(DMPlexTransformSetType(tr, DMPLEXREFINEREGULAR)); 78589566063dSJacob Faibussowitsch PetscCall(DMPlexTransformCellTransform(tr, ct, point, NULL, &Nt, &rct, &rsize, &rcone, &rornt)); 7859012bc364SMatthew G. Knepley numSubcells = rsize[Nt-1]; 78609566063dSJacob Faibussowitsch PetscCall(DMPlexTransformDestroy(&tr)); 7861412e9a14SMatthew G. Knepley } 78629566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmf, maxFPoints*2*numSubcells, MPIU_INT, &ftotpoints)); 78637c927364SMatthew G. Knepley for (r = 0, q = 0; r < numSubcells; ++r) { 78647c927364SMatthew G. Knepley /* TODO Map from coarse to fine cells */ 78659566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dmf, point*numSubcells + r, PETSC_TRUE, &numFPoints, &fpoints)); 78667c927364SMatthew G. Knepley /* Compress out points not in the section */ 78679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(fsection, &pStart, &pEnd)); 78687c927364SMatthew G. Knepley for (p = 0; p < numFPoints*2; p += 2) { 78697c927364SMatthew G. Knepley if ((fpoints[p] >= pStart) && (fpoints[p] < pEnd)) { 78709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(fsection, fpoints[p], &dof)); 78717c927364SMatthew G. Knepley if (!dof) continue; 78727c927364SMatthew G. Knepley for (s = 0; s < q; ++s) if (fpoints[p] == ftotpoints[s*2]) break; 78737c927364SMatthew G. Knepley if (s < q) continue; 78747c927364SMatthew G. Knepley ftotpoints[q*2] = fpoints[p]; 78757c927364SMatthew G. Knepley ftotpoints[q*2+1] = fpoints[p+1]; 78767c927364SMatthew G. Knepley ++q; 78777c927364SMatthew G. Knepley } 78787c927364SMatthew G. Knepley } 78799566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dmf, point, PETSC_TRUE, &numFPoints, &fpoints)); 78807c927364SMatthew G. Knepley } 78817c927364SMatthew G. Knepley numFPoints = q; 78827c927364SMatthew G. Knepley for (p = 0, numFIndices = 0; p < numFPoints*2; p += 2) { 78837c927364SMatthew G. Knepley PetscInt fdof; 78847c927364SMatthew G. Knepley 78859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(fsection, ftotpoints[p], &dof)); 78867c927364SMatthew G. Knepley if (!dof) continue; 78877c927364SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 78889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(fsection, ftotpoints[p], f, &fdof)); 78897c927364SMatthew G. Knepley foffsets[f+1] += fdof; 78907c927364SMatthew G. Knepley } 78917c927364SMatthew G. Knepley numFIndices += dof; 78927c927364SMatthew G. Knepley } 78937c927364SMatthew G. Knepley for (f = 1; f < numFields; ++f) foffsets[f+1] += foffsets[f]; 78947c927364SMatthew G. Knepley 78951dca8a05SBarry Smith PetscCheck(!numFields || foffsets[numFields] == numFIndices,PetscObjectComm((PetscObject)dmf), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, foffsets[numFields], numFIndices); 78961dca8a05SBarry Smith PetscCheck(!numFields || coffsets[numFields] == numCIndices,PetscObjectComm((PetscObject)dmc), PETSC_ERR_PLIB, "Invalid size for closure %" PetscInt_FMT " should be %" PetscInt_FMT, coffsets[numFields], numCIndices); 78977c927364SMatthew G. Knepley if (numFields) { 78984acb8e1eSToby Isaac const PetscInt **permsF[32] = {NULL}; 78994acb8e1eSToby Isaac const PetscInt **permsC[32] = {NULL}; 79004acb8e1eSToby Isaac 79014acb8e1eSToby Isaac for (f = 0; f < numFields; f++) { 79029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(fsection,f,numFPoints,ftotpoints,&permsF[f],NULL)); 79039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldPointSyms(csection,f,numCPoints,cpoints,&permsC[f],NULL)); 79047c927364SMatthew G. Knepley } 79054acb8e1eSToby Isaac for (p = 0; p < numFPoints; p++) { 79069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalFSection, ftotpoints[2*p], &globalOff)); 79079566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(fsection, PETSC_FALSE, ftotpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, foffsets, PETSC_FALSE, permsF, p, fclperm, findices)); 79084acb8e1eSToby Isaac } 79094acb8e1eSToby Isaac for (p = 0; p < numCPoints; p++) { 79109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalCSection, cpoints[2*p], &globalOff)); 79119566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPointFields_Internal(csection, PETSC_FALSE, cpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, coffsets, PETSC_FALSE, permsC, p, cclperm, cindices)); 79124acb8e1eSToby Isaac } 79134acb8e1eSToby Isaac for (f = 0; f < numFields; f++) { 79149566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(fsection,f,numFPoints,ftotpoints,&permsF[f],NULL)); 79159566063dSJacob Faibussowitsch PetscCall(PetscSectionRestoreFieldPointSyms(csection,f,numCPoints,cpoints,&permsC[f],NULL)); 79167c927364SMatthew G. Knepley } 79177c927364SMatthew G. Knepley } else { 79184acb8e1eSToby Isaac const PetscInt **permsF = NULL; 79194acb8e1eSToby Isaac const PetscInt **permsC = NULL; 79204acb8e1eSToby Isaac 79219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(fsection,numFPoints,ftotpoints,&permsF,NULL)); 79229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointSyms(csection,numCPoints,cpoints,&permsC,NULL)); 79234acb8e1eSToby Isaac for (p = 0, off = 0; p < numFPoints; p++) { 79244acb8e1eSToby Isaac const PetscInt *perm = permsF ? permsF[p] : NULL; 79254acb8e1eSToby Isaac 79269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalFSection, ftotpoints[2*p], &globalOff)); 79279566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(fsection, PETSC_FALSE, ftotpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, &off, PETSC_FALSE, perm, fclperm, findices)); 79287c927364SMatthew G. Knepley } 79294acb8e1eSToby Isaac for (p = 0, off = 0; p < numCPoints; p++) { 79304acb8e1eSToby Isaac const PetscInt *perm = permsC ? permsC[p] : NULL; 79314acb8e1eSToby Isaac 79329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalCSection, cpoints[2*p], &globalOff)); 79339566063dSJacob Faibussowitsch PetscCall(DMPlexGetIndicesPoint_Internal(csection, PETSC_FALSE, cpoints[2*p], globalOff < 0 ? -(globalOff+1) : globalOff, &off, PETSC_FALSE, perm, cclperm, cindices)); 79347c927364SMatthew G. Knepley } 79359566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(fsection,numFPoints,ftotpoints,&permsF,NULL)); 79369566063dSJacob Faibussowitsch PetscCall(PetscSectionRestorePointSyms(csection,numCPoints,cpoints,&permsC,NULL)); 79377c927364SMatthew G. Knepley } 79389566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmf, numCPoints*2*4, MPIU_INT, &ftotpoints)); 79399566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dmc, point, PETSC_TRUE, &numCPoints, &cpoints)); 79407c927364SMatthew G. Knepley PetscFunctionReturn(0); 79417c927364SMatthew G. Knepley } 79427c927364SMatthew G. Knepley 79437cd05799SMatthew G. Knepley /*@C 79447cd05799SMatthew G. Knepley DMPlexGetVTKCellHeight - Returns the height in the DAG used to determine which points are cells (normally 0) 79457cd05799SMatthew G. Knepley 79467cd05799SMatthew G. Knepley Input Parameter: 79477cd05799SMatthew G. Knepley . dm - The DMPlex object 79487cd05799SMatthew G. Knepley 79497cd05799SMatthew G. Knepley Output Parameter: 79507cd05799SMatthew G. Knepley . cellHeight - The height of a cell 79517cd05799SMatthew G. Knepley 79527cd05799SMatthew G. Knepley Level: developer 79537cd05799SMatthew G. Knepley 7954db781477SPatrick Sanan .seealso `DMPlexSetVTKCellHeight()` 79557cd05799SMatthew G. Knepley @*/ 7956552f7358SJed Brown PetscErrorCode DMPlexGetVTKCellHeight(DM dm, PetscInt *cellHeight) 7957552f7358SJed Brown { 7958552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 7959552f7358SJed Brown 7960552f7358SJed Brown PetscFunctionBegin; 7961552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7962dadcf809SJacob Faibussowitsch PetscValidIntPointer(cellHeight, 2); 7963552f7358SJed Brown *cellHeight = mesh->vtkCellHeight; 7964552f7358SJed Brown PetscFunctionReturn(0); 7965552f7358SJed Brown } 7966552f7358SJed Brown 79677cd05799SMatthew G. Knepley /*@C 79687cd05799SMatthew G. Knepley DMPlexSetVTKCellHeight - Sets the height in the DAG used to determine which points are cells (normally 0) 79697cd05799SMatthew G. Knepley 79707cd05799SMatthew G. Knepley Input Parameters: 79717cd05799SMatthew G. Knepley + dm - The DMPlex object 79727cd05799SMatthew G. Knepley - cellHeight - The height of a cell 79737cd05799SMatthew G. Knepley 79747cd05799SMatthew G. Knepley Level: developer 79757cd05799SMatthew G. Knepley 7976db781477SPatrick Sanan .seealso `DMPlexGetVTKCellHeight()` 79777cd05799SMatthew G. Knepley @*/ 7978552f7358SJed Brown PetscErrorCode DMPlexSetVTKCellHeight(DM dm, PetscInt cellHeight) 7979552f7358SJed Brown { 7980552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 7981552f7358SJed Brown 7982552f7358SJed Brown PetscFunctionBegin; 7983552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7984552f7358SJed Brown mesh->vtkCellHeight = cellHeight; 7985552f7358SJed Brown PetscFunctionReturn(0); 7986552f7358SJed Brown } 7987552f7358SJed Brown 7988e6139122SMatthew G. Knepley /*@ 7989e6139122SMatthew G. Knepley DMPlexGetGhostCellStratum - Get the range of cells which are used to enforce FV boundary conditions 7990e6139122SMatthew G. Knepley 7991e6139122SMatthew G. Knepley Input Parameter: 7992e6139122SMatthew G. Knepley . dm - The DMPlex object 7993e6139122SMatthew G. Knepley 7994e6139122SMatthew G. Knepley Output Parameters: 79952a9f31c0SMatthew G. Knepley + gcStart - The first ghost cell, or NULL 79962a9f31c0SMatthew G. Knepley - gcEnd - The upper bound on ghost cells, or NULL 7997e6139122SMatthew G. Knepley 79982a9f31c0SMatthew G. Knepley Level: advanced 7999e6139122SMatthew G. Knepley 8000db781477SPatrick Sanan .seealso `DMPlexConstructGhostCells()`, `DMPlexGetGhostCellStratum()` 8001e6139122SMatthew G. Knepley @*/ 8002e6139122SMatthew G. Knepley PetscErrorCode DMPlexGetGhostCellStratum(DM dm, PetscInt *gcStart, PetscInt *gcEnd) 8003e6139122SMatthew G. Knepley { 8004412e9a14SMatthew G. Knepley DMLabel ctLabel; 8005e6139122SMatthew G. Knepley 8006e6139122SMatthew G. Knepley PetscFunctionBegin; 8007e6139122SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80089566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 80099566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_FV_GHOST, gcStart, gcEnd)); 8010e6139122SMatthew G. Knepley PetscFunctionReturn(0); 8011e6139122SMatthew G. Knepley } 8012e6139122SMatthew G. Knepley 80139886b8cfSStefano Zampini PetscErrorCode DMPlexCreateNumbering_Plex(DM dm, PetscInt pStart, PetscInt pEnd, PetscInt shift, PetscInt *globalSize, PetscSF sf, IS *numbering) 8014552f7358SJed Brown { 8015552f7358SJed Brown PetscSection section, globalSection; 8016552f7358SJed Brown PetscInt *numbers, p; 8017552f7358SJed Brown 8018552f7358SJed Brown PetscFunctionBegin; 80196c1ef331SVaclav Hapla if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, sf)); 80209566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), §ion)); 80219566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(section, pStart, pEnd)); 8022552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 80239566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(section, p, 1)); 8024552f7358SJed Brown } 80259566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(section)); 80269566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(section, sf, PETSC_FALSE, PETSC_FALSE, &globalSection)); 80279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd - pStart, &numbers)); 8028552f7358SJed Brown for (p = pStart; p < pEnd; ++p) { 80299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &numbers[p-pStart])); 8030ef48cebcSMatthew G. Knepley if (numbers[p-pStart] < 0) numbers[p-pStart] -= shift; 8031ef48cebcSMatthew G. Knepley else numbers[p-pStart] += shift; 8032552f7358SJed Brown } 80339566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject) dm), pEnd - pStart, numbers, PETSC_OWN_POINTER, numbering)); 8034ef48cebcSMatthew G. Knepley if (globalSize) { 8035ef48cebcSMatthew G. Knepley PetscLayout layout; 80369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetPointLayout(PetscObjectComm((PetscObject) dm), globalSection, &layout)); 80379566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(layout, globalSize)); 80389566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 8039ef48cebcSMatthew G. Knepley } 80409566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(§ion)); 80419566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&globalSection)); 8042552f7358SJed Brown PetscFunctionReturn(0); 8043552f7358SJed Brown } 8044552f7358SJed Brown 804581ed3555SMatthew G. Knepley PetscErrorCode DMPlexCreateCellNumbering_Internal(DM dm, PetscBool includeHybrid, IS *globalCellNumbers) 8046552f7358SJed Brown { 8047412e9a14SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd; 8048552f7358SJed Brown 8049552f7358SJed Brown PetscFunctionBegin; 80509566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 80519566063dSJacob Faibussowitsch if (includeHybrid) PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 80529566063dSJacob Faibussowitsch else PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 80539566063dSJacob Faibussowitsch PetscCall(DMPlexCreateNumbering_Plex(dm, cStart, cEnd, 0, NULL, dm->sf, globalCellNumbers)); 805481ed3555SMatthew G. Knepley PetscFunctionReturn(0); 8055552f7358SJed Brown } 805681ed3555SMatthew G. Knepley 80578dab3259SMatthew G. Knepley /*@ 80587cd05799SMatthew G. Knepley DMPlexGetCellNumbering - Get a global cell numbering for all cells on this process 80597cd05799SMatthew G. Knepley 80607cd05799SMatthew G. Knepley Input Parameter: 80617cd05799SMatthew G. Knepley . dm - The DMPlex object 80627cd05799SMatthew G. Knepley 80637cd05799SMatthew G. Knepley Output Parameter: 80647cd05799SMatthew G. Knepley . globalCellNumbers - Global cell numbers for all cells on this process 80657cd05799SMatthew G. Knepley 80667cd05799SMatthew G. Knepley Level: developer 80677cd05799SMatthew G. Knepley 8068db781477SPatrick Sanan .seealso `DMPlexGetVertexNumbering()` 80697cd05799SMatthew G. Knepley @*/ 807081ed3555SMatthew G. Knepley PetscErrorCode DMPlexGetCellNumbering(DM dm, IS *globalCellNumbers) 807181ed3555SMatthew G. Knepley { 807281ed3555SMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 807381ed3555SMatthew G. Knepley 807481ed3555SMatthew G. Knepley PetscFunctionBegin; 807581ed3555SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80769566063dSJacob Faibussowitsch if (!mesh->globalCellNumbers) PetscCall(DMPlexCreateCellNumbering_Internal(dm, PETSC_FALSE, &mesh->globalCellNumbers)); 8077552f7358SJed Brown *globalCellNumbers = mesh->globalCellNumbers; 8078552f7358SJed Brown PetscFunctionReturn(0); 8079552f7358SJed Brown } 8080552f7358SJed Brown 808181ed3555SMatthew G. Knepley PetscErrorCode DMPlexCreateVertexNumbering_Internal(DM dm, PetscBool includeHybrid, IS *globalVertexNumbers) 808281ed3555SMatthew G. Knepley { 8083412e9a14SMatthew G. Knepley PetscInt vStart, vEnd; 808481ed3555SMatthew G. Knepley 808581ed3555SMatthew G. Knepley PetscFunctionBegin; 808681ed3555SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80879566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 80889566063dSJacob Faibussowitsch PetscCall(DMPlexCreateNumbering_Plex(dm, vStart, vEnd, 0, NULL, dm->sf, globalVertexNumbers)); 808981ed3555SMatthew G. Knepley PetscFunctionReturn(0); 809081ed3555SMatthew G. Knepley } 809181ed3555SMatthew G. Knepley 80928dab3259SMatthew G. Knepley /*@ 80936aa51ba9SJacob Faibussowitsch DMPlexGetVertexNumbering - Get a global vertex numbering for all vertices on this process 80947cd05799SMatthew G. Knepley 80957cd05799SMatthew G. Knepley Input Parameter: 80967cd05799SMatthew G. Knepley . dm - The DMPlex object 80977cd05799SMatthew G. Knepley 80987cd05799SMatthew G. Knepley Output Parameter: 80997cd05799SMatthew G. Knepley . globalVertexNumbers - Global vertex numbers for all vertices on this process 81007cd05799SMatthew G. Knepley 81017cd05799SMatthew G. Knepley Level: developer 81027cd05799SMatthew G. Knepley 8103db781477SPatrick Sanan .seealso `DMPlexGetCellNumbering()` 81047cd05799SMatthew G. Knepley @*/ 8105552f7358SJed Brown PetscErrorCode DMPlexGetVertexNumbering(DM dm, IS *globalVertexNumbers) 8106552f7358SJed Brown { 8107552f7358SJed Brown DM_Plex *mesh = (DM_Plex*) dm->data; 8108552f7358SJed Brown 8109552f7358SJed Brown PetscFunctionBegin; 8110552f7358SJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81119566063dSJacob Faibussowitsch if (!mesh->globalVertexNumbers) PetscCall(DMPlexCreateVertexNumbering_Internal(dm, PETSC_FALSE, &mesh->globalVertexNumbers)); 8112552f7358SJed Brown *globalVertexNumbers = mesh->globalVertexNumbers; 8113552f7358SJed Brown PetscFunctionReturn(0); 8114552f7358SJed Brown } 8115552f7358SJed Brown 81168dab3259SMatthew G. Knepley /*@ 81177cd05799SMatthew G. Knepley DMPlexCreatePointNumbering - Create a global numbering for all points on this process 81187cd05799SMatthew G. Knepley 81197cd05799SMatthew G. Knepley Input Parameter: 81207cd05799SMatthew G. Knepley . dm - The DMPlex object 81217cd05799SMatthew G. Knepley 81227cd05799SMatthew G. Knepley Output Parameter: 81237cd05799SMatthew G. Knepley . globalPointNumbers - Global numbers for all points on this process 81247cd05799SMatthew G. Knepley 81257cd05799SMatthew G. Knepley Level: developer 81267cd05799SMatthew G. Knepley 8127db781477SPatrick Sanan .seealso `DMPlexGetCellNumbering()` 81287cd05799SMatthew G. Knepley @*/ 8129ef48cebcSMatthew G. Knepley PetscErrorCode DMPlexCreatePointNumbering(DM dm, IS *globalPointNumbers) 8130ef48cebcSMatthew G. Knepley { 8131ef48cebcSMatthew G. Knepley IS nums[4]; 8132862913ffSStefano Zampini PetscInt depths[4], gdepths[4], starts[4]; 8133ef48cebcSMatthew G. Knepley PetscInt depth, d, shift = 0; 8134ef48cebcSMatthew G. Knepley 8135ef48cebcSMatthew G. Knepley PetscFunctionBegin; 8136ef48cebcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81379566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 81388abc87a0SMichael Lange /* For unstratified meshes use dim instead of depth */ 81399566063dSJacob Faibussowitsch if (depth < 0) PetscCall(DMGetDimension(dm, &depth)); 8140862913ffSStefano Zampini for (d = 0; d <= depth; ++d) { 8141862913ffSStefano Zampini PetscInt end; 8142862913ffSStefano Zampini 8143862913ffSStefano Zampini depths[d] = depth-d; 81449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, depths[d], &starts[d], &end)); 8145862913ffSStefano Zampini if (!(starts[d]-end)) { starts[d] = depths[d] = -1; } 8146862913ffSStefano Zampini } 81479566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(depth+1, starts, depths)); 81481c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(depths, gdepths, depth+1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject) dm))); 8149862913ffSStefano Zampini for (d = 0; d <= depth; ++d) { 81501dca8a05SBarry Smith PetscCheck(starts[d] < 0 || depths[d] == gdepths[d],PETSC_COMM_SELF,PETSC_ERR_PLIB,"Expected depth %" PetscInt_FMT ", found %" PetscInt_FMT,depths[d],gdepths[d]); 8151862913ffSStefano Zampini } 8152ef48cebcSMatthew G. Knepley for (d = 0; d <= depth; ++d) { 8153ef48cebcSMatthew G. Knepley PetscInt pStart, pEnd, gsize; 8154ef48cebcSMatthew G. Knepley 81559566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, gdepths[d], &pStart, &pEnd)); 81569566063dSJacob Faibussowitsch PetscCall(DMPlexCreateNumbering_Plex(dm, pStart, pEnd, shift, &gsize, dm->sf, &nums[d])); 8157ef48cebcSMatthew G. Knepley shift += gsize; 8158ef48cebcSMatthew G. Knepley } 81599566063dSJacob Faibussowitsch PetscCall(ISConcatenate(PetscObjectComm((PetscObject) dm), depth+1, nums, globalPointNumbers)); 81609566063dSJacob Faibussowitsch for (d = 0; d <= depth; ++d) PetscCall(ISDestroy(&nums[d])); 8161ef48cebcSMatthew G. Knepley PetscFunctionReturn(0); 8162ef48cebcSMatthew G. Knepley } 8163ef48cebcSMatthew G. Knepley 816408a22f4bSMatthew G. Knepley /*@ 816508a22f4bSMatthew G. Knepley DMPlexCreateRankField - Create a cell field whose value is the rank of the owner 816608a22f4bSMatthew G. Knepley 816708a22f4bSMatthew G. Knepley Input Parameter: 816808a22f4bSMatthew G. Knepley . dm - The DMPlex object 816908a22f4bSMatthew G. Knepley 817008a22f4bSMatthew G. Knepley Output Parameter: 817108a22f4bSMatthew G. Knepley . ranks - The rank field 817208a22f4bSMatthew G. Knepley 817308a22f4bSMatthew G. Knepley Options Database Keys: 817408a22f4bSMatthew G. Knepley . -dm_partition_view - Adds the rank field into the DM output from -dm_view using the same viewer 817508a22f4bSMatthew G. Knepley 817608a22f4bSMatthew G. Knepley Level: intermediate 817708a22f4bSMatthew G. Knepley 8178db781477SPatrick Sanan .seealso: `DMView()` 817908a22f4bSMatthew G. Knepley @*/ 818008a22f4bSMatthew G. Knepley PetscErrorCode DMPlexCreateRankField(DM dm, Vec *ranks) 818108a22f4bSMatthew G. Knepley { 818208a22f4bSMatthew G. Knepley DM rdm; 818308a22f4bSMatthew G. Knepley PetscFE fe; 818408a22f4bSMatthew G. Knepley PetscScalar *r; 818508a22f4bSMatthew G. Knepley PetscMPIInt rank; 8186a55f9a55SMatthew G. Knepley DMPolytopeType ct; 818708a22f4bSMatthew G. Knepley PetscInt dim, cStart, cEnd, c; 8188a55f9a55SMatthew G. Knepley PetscBool simplex; 818908a22f4bSMatthew G. Knepley 819008a22f4bSMatthew G. Knepley PetscFunctionBeginUser; 8191f95ace6aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8192f95ace6aSMatthew G. Knepley PetscValidPointer(ranks, 2); 81939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 81949566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &rdm)); 81959566063dSJacob Faibussowitsch PetscCall(DMGetDimension(rdm, &dim)); 81969566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(rdm, 0, &cStart, &cEnd)); 81979566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 8198a55f9a55SMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct)+1 ? PETSC_TRUE : PETSC_FALSE; 81999566063dSJacob Faibussowitsch PetscCall(PetscFECreateDefault(PETSC_COMM_SELF, dim, 1, simplex, "PETSc___rank_", -1, &fe)); 82009566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) fe, "rank")); 82019566063dSJacob Faibussowitsch PetscCall(DMSetField(rdm, 0, NULL, (PetscObject) fe)); 82029566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&fe)); 82039566063dSJacob Faibussowitsch PetscCall(DMCreateDS(rdm)); 82049566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(rdm, ranks)); 82059566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *ranks, "partition")); 82069566063dSJacob Faibussowitsch PetscCall(VecGetArray(*ranks, &r)); 820708a22f4bSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 820808a22f4bSMatthew G. Knepley PetscScalar *lr; 820908a22f4bSMatthew G. Knepley 82109566063dSJacob Faibussowitsch PetscCall(DMPlexPointGlobalRef(rdm, c, r, &lr)); 821171f09efeSPierre Jolivet if (lr) *lr = rank; 821208a22f4bSMatthew G. Knepley } 82139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*ranks, &r)); 82149566063dSJacob Faibussowitsch PetscCall(DMDestroy(&rdm)); 821508a22f4bSMatthew G. Knepley PetscFunctionReturn(0); 821608a22f4bSMatthew G. Knepley } 821708a22f4bSMatthew G. Knepley 8218ca8062c8SMatthew G. Knepley /*@ 821918e14f0cSMatthew G. Knepley DMPlexCreateLabelField - Create a cell field whose value is the label value for that cell 822018e14f0cSMatthew G. Knepley 822118e14f0cSMatthew G. Knepley Input Parameters: 822218e14f0cSMatthew G. Knepley + dm - The DMPlex 822318e14f0cSMatthew G. Knepley - label - The DMLabel 822418e14f0cSMatthew G. Knepley 822518e14f0cSMatthew G. Knepley Output Parameter: 822618e14f0cSMatthew G. Knepley . val - The label value field 822718e14f0cSMatthew G. Knepley 822818e14f0cSMatthew G. Knepley Options Database Keys: 822918e14f0cSMatthew G. Knepley . -dm_label_view - Adds the label value field into the DM output from -dm_view using the same viewer 823018e14f0cSMatthew G. Knepley 823118e14f0cSMatthew G. Knepley Level: intermediate 823218e14f0cSMatthew G. Knepley 8233db781477SPatrick Sanan .seealso: `DMView()` 823418e14f0cSMatthew G. Knepley @*/ 823518e14f0cSMatthew G. Knepley PetscErrorCode DMPlexCreateLabelField(DM dm, DMLabel label, Vec *val) 823618e14f0cSMatthew G. Knepley { 823718e14f0cSMatthew G. Knepley DM rdm; 823818e14f0cSMatthew G. Knepley PetscFE fe; 823918e14f0cSMatthew G. Knepley PetscScalar *v; 824018e14f0cSMatthew G. Knepley PetscInt dim, cStart, cEnd, c; 824118e14f0cSMatthew G. Knepley 824218e14f0cSMatthew G. Knepley PetscFunctionBeginUser; 824318e14f0cSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 824418e14f0cSMatthew G. Knepley PetscValidPointer(label, 2); 824518e14f0cSMatthew G. Knepley PetscValidPointer(val, 3); 82469566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &rdm)); 82479566063dSJacob Faibussowitsch PetscCall(DMGetDimension(rdm, &dim)); 82489566063dSJacob Faibussowitsch PetscCall(PetscFECreateDefault(PetscObjectComm((PetscObject) rdm), dim, 1, PETSC_TRUE, "PETSc___label_value_", -1, &fe)); 82499566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) fe, "label_value")); 82509566063dSJacob Faibussowitsch PetscCall(DMSetField(rdm, 0, NULL, (PetscObject) fe)); 82519566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&fe)); 82529566063dSJacob Faibussowitsch PetscCall(DMCreateDS(rdm)); 82539566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(rdm, 0, &cStart, &cEnd)); 82549566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(rdm, val)); 82559566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *val, "label_value")); 82569566063dSJacob Faibussowitsch PetscCall(VecGetArray(*val, &v)); 825718e14f0cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 825818e14f0cSMatthew G. Knepley PetscScalar *lv; 825918e14f0cSMatthew G. Knepley PetscInt cval; 826018e14f0cSMatthew G. Knepley 82619566063dSJacob Faibussowitsch PetscCall(DMPlexPointGlobalRef(rdm, c, v, &lv)); 82629566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &cval)); 826318e14f0cSMatthew G. Knepley *lv = cval; 826418e14f0cSMatthew G. Knepley } 82659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(*val, &v)); 82669566063dSJacob Faibussowitsch PetscCall(DMDestroy(&rdm)); 826718e14f0cSMatthew G. Knepley PetscFunctionReturn(0); 826818e14f0cSMatthew G. Knepley } 826918e14f0cSMatthew G. Knepley 827018e14f0cSMatthew G. Knepley /*@ 8271ca8062c8SMatthew G. Knepley DMPlexCheckSymmetry - Check that the adjacency information in the mesh is symmetric. 8272ca8062c8SMatthew G. Knepley 827369916449SMatthew G. Knepley Input Parameter: 827469916449SMatthew G. Knepley . dm - The DMPlex object 8275ca8062c8SMatthew G. Knepley 827695eb5ee5SVaclav Hapla Notes: 827795eb5ee5SVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 827895eb5ee5SVaclav Hapla 827995eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 8280ca8062c8SMatthew G. Knepley 8281ca8062c8SMatthew G. Knepley Level: developer 8282ca8062c8SMatthew G. Knepley 8283db781477SPatrick Sanan .seealso: `DMCreate()`, `DMSetFromOptions()` 8284ca8062c8SMatthew G. Knepley @*/ 8285ca8062c8SMatthew G. Knepley PetscErrorCode DMPlexCheckSymmetry(DM dm) 8286ca8062c8SMatthew G. Knepley { 8287ca8062c8SMatthew G. Knepley PetscSection coneSection, supportSection; 8288ca8062c8SMatthew G. Knepley const PetscInt *cone, *support; 8289ca8062c8SMatthew G. Knepley PetscInt coneSize, c, supportSize, s; 829057beb4faSStefano Zampini PetscInt pStart, pEnd, p, pp, csize, ssize; 829157beb4faSStefano Zampini PetscBool storagecheck = PETSC_TRUE; 8292ca8062c8SMatthew G. Knepley 8293ca8062c8SMatthew G. Knepley PetscFunctionBegin; 8294ca8062c8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 82959566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dm, NULL, "-sym_dm_view")); 82969566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &coneSection)); 82979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSection(dm, &supportSection)); 8298ca8062c8SMatthew G. Knepley /* Check that point p is found in the support of its cone points, and vice versa */ 82999566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8300ca8062c8SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 83019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 83029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 8303ca8062c8SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 830442e66dfaSMatthew G. Knepley PetscBool dup = PETSC_FALSE; 830542e66dfaSMatthew G. Knepley PetscInt d; 830642e66dfaSMatthew G. Knepley for (d = c-1; d >= 0; --d) { 830742e66dfaSMatthew G. Knepley if (cone[c] == cone[d]) {dup = PETSC_TRUE; break;} 830842e66dfaSMatthew G. Knepley } 83099566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &supportSize)); 83109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 8311ca8062c8SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 8312ca8062c8SMatthew G. Knepley if (support[s] == p) break; 8313ca8062c8SMatthew G. Knepley } 831442e66dfaSMatthew G. Knepley if ((s >= supportSize) || (dup && (support[s+1] != p))) { 831563a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "p: %" PetscInt_FMT " cone: ", p)); 8316ca8062c8SMatthew G. Knepley for (s = 0; s < coneSize; ++s) { 831763a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT ", ", cone[s])); 8318ca8062c8SMatthew G. Knepley } 83199566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 832063a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "p: %" PetscInt_FMT " support: ", cone[c])); 8321ca8062c8SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 832263a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT ", ", support[s])); 8323ca8062c8SMatthew G. Knepley } 83249566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 832563a3b9bcSJacob Faibussowitsch PetscCheck(!dup,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " not repeatedly found in support of repeated cone point %" PetscInt_FMT, p, cone[c]); 832663a3b9bcSJacob Faibussowitsch else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " not found in support of cone point %" PetscInt_FMT, p, cone[c]); 8327ca8062c8SMatthew G. Knepley } 832842e66dfaSMatthew G. Knepley } 83299566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(dm, p, &pp, NULL)); 833057beb4faSStefano Zampini if (p != pp) { storagecheck = PETSC_FALSE; continue; } 83319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 83329566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 8333ca8062c8SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 83349566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 83359566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 8336ca8062c8SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 83379566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeParent(dm, cone[c], &pp, NULL)); 833857beb4faSStefano Zampini if (cone[c] != pp) { c = 0; break; } 8339ca8062c8SMatthew G. Knepley if (cone[c] == p) break; 8340ca8062c8SMatthew G. Knepley } 8341ca8062c8SMatthew G. Knepley if (c >= coneSize) { 834263a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "p: %" PetscInt_FMT " support: ", p)); 8343ca8062c8SMatthew G. Knepley for (c = 0; c < supportSize; ++c) { 834463a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT ", ", support[c])); 8345ca8062c8SMatthew G. Knepley } 83469566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 834763a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "p: %" PetscInt_FMT " cone: ", support[s])); 8348ca8062c8SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 834963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT ", ", cone[c])); 8350ca8062c8SMatthew G. Knepley } 83519566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 835263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " not found in cone of support point %" PetscInt_FMT, p, support[s]); 8353ca8062c8SMatthew G. Knepley } 8354ca8062c8SMatthew G. Knepley } 8355ca8062c8SMatthew G. Knepley } 835657beb4faSStefano Zampini if (storagecheck) { 83579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(coneSection, &csize)); 83589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(supportSection, &ssize)); 835963a3b9bcSJacob Faibussowitsch PetscCheck(csize == ssize,PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Total cone size %" PetscInt_FMT " != Total support size %" PetscInt_FMT, csize, ssize); 836057beb4faSStefano Zampini } 8361ca8062c8SMatthew G. Knepley PetscFunctionReturn(0); 8362ca8062c8SMatthew G. Knepley } 8363ca8062c8SMatthew G. Knepley 8364412e9a14SMatthew G. Knepley /* 8365412e9a14SMatthew G. Knepley For submeshes with cohesive cells (see DMPlexConstructCohesiveCells()), we allow a special case where some of the boundary of a face (edges and vertices) are not duplicated. We call these special boundary points "unsplit", since the same edge or vertex appears in both copies of the face. These unsplit points throw off our counting, so we have to explicitly account for them here. 8366412e9a14SMatthew G. Knepley */ 8367412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellUnsplitVertices_Private(DM dm, PetscInt c, DMPolytopeType ct, PetscInt *unsplit) 8368412e9a14SMatthew G. Knepley { 8369412e9a14SMatthew G. Knepley DMPolytopeType cct; 8370412e9a14SMatthew G. Knepley PetscInt ptpoints[4]; 8371412e9a14SMatthew G. Knepley const PetscInt *cone, *ccone, *ptcone; 8372412e9a14SMatthew G. Knepley PetscInt coneSize, cp, cconeSize, ccp, npt = 0, pt; 8373412e9a14SMatthew G. Knepley 8374412e9a14SMatthew G. Knepley PetscFunctionBegin; 8375412e9a14SMatthew G. Knepley *unsplit = 0; 8376412e9a14SMatthew G. Knepley switch (ct) { 8377b5a892a1SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 8378b5a892a1SMatthew G. Knepley ptpoints[npt++] = c; 8379b5a892a1SMatthew G. Knepley break; 8380412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 83819566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 83829566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 8383412e9a14SMatthew G. Knepley for (cp = 0; cp < coneSize; ++cp) { 83849566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[cp], &cct)); 8385412e9a14SMatthew G. Knepley if (cct == DM_POLYTOPE_POINT_PRISM_TENSOR) ptpoints[npt++] = cone[cp]; 8386412e9a14SMatthew G. Knepley } 8387412e9a14SMatthew G. Knepley break; 8388412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 8389412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 83909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 83919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 8392412e9a14SMatthew G. Knepley for (cp = 0; cp < coneSize; ++cp) { 83939566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[cp], &ccone)); 83949566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[cp], &cconeSize)); 8395412e9a14SMatthew G. Knepley for (ccp = 0; ccp < cconeSize; ++ccp) { 83969566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, ccone[ccp], &cct)); 8397412e9a14SMatthew G. Knepley if (cct == DM_POLYTOPE_POINT_PRISM_TENSOR) { 8398412e9a14SMatthew G. Knepley PetscInt p; 8399412e9a14SMatthew G. Knepley for (p = 0; p < npt; ++p) if (ptpoints[p] == ccone[ccp]) break; 8400412e9a14SMatthew G. Knepley if (p == npt) ptpoints[npt++] = ccone[ccp]; 8401412e9a14SMatthew G. Knepley } 8402412e9a14SMatthew G. Knepley } 8403412e9a14SMatthew G. Knepley } 8404412e9a14SMatthew G. Knepley break; 8405412e9a14SMatthew G. Knepley default: break; 8406412e9a14SMatthew G. Knepley } 8407412e9a14SMatthew G. Knepley for (pt = 0; pt < npt; ++pt) { 84089566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ptpoints[pt], &ptcone)); 8409412e9a14SMatthew G. Knepley if (ptcone[0] == ptcone[1]) ++(*unsplit); 8410412e9a14SMatthew G. Knepley } 8411412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 8412412e9a14SMatthew G. Knepley } 8413412e9a14SMatthew G. Knepley 8414ca8062c8SMatthew G. Knepley /*@ 8415ca8062c8SMatthew G. Knepley DMPlexCheckSkeleton - Check that each cell has the correct number of vertices 8416ca8062c8SMatthew G. Knepley 8417ca8062c8SMatthew G. Knepley Input Parameters: 8418ca8062c8SMatthew G. Knepley + dm - The DMPlex object 841958723a97SMatthew G. Knepley - cellHeight - Normally 0 8420ca8062c8SMatthew G. Knepley 842195eb5ee5SVaclav Hapla Notes: 842295eb5ee5SVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 842325c50c26SVaclav Hapla Currently applicable only to homogeneous simplex or tensor meshes. 8424ca8062c8SMatthew G. Knepley 842595eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 842695eb5ee5SVaclav Hapla 8427ca8062c8SMatthew G. Knepley Level: developer 8428ca8062c8SMatthew G. Knepley 8429db781477SPatrick Sanan .seealso: `DMCreate()`, `DMSetFromOptions()` 8430ca8062c8SMatthew G. Knepley @*/ 843125c50c26SVaclav Hapla PetscErrorCode DMPlexCheckSkeleton(DM dm, PetscInt cellHeight) 8432ca8062c8SMatthew G. Knepley { 8433412e9a14SMatthew G. Knepley DMPlexInterpolatedFlag interp; 8434412e9a14SMatthew G. Knepley DMPolytopeType ct; 8435412e9a14SMatthew G. Knepley PetscInt vStart, vEnd, cStart, cEnd, c; 8436ca8062c8SMatthew G. Knepley 8437ca8062c8SMatthew G. Knepley PetscFunctionBegin; 8438ca8062c8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 84399566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interp)); 84409566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 84419566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 8442412e9a14SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 8443412e9a14SMatthew G. Knepley PetscInt *closure = NULL; 8444412e9a14SMatthew G. Knepley PetscInt coneSize, closureSize, cl, Nv = 0; 844558723a97SMatthew G. Knepley 84469566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &ct)); 844763a3b9bcSJacob Faibussowitsch PetscCheck((PetscInt) ct >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " has no cell type", c); 8448412e9a14SMatthew G. Knepley if (ct == DM_POLYTOPE_UNKNOWN) continue; 8449412e9a14SMatthew G. Knepley if (interp == DMPLEX_INTERPOLATED_FULL) { 84509566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 845163a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == DMPolytopeTypeGetConeSize(ct),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " of type %s has cone size %" PetscInt_FMT " != %" PetscInt_FMT, c, DMPolytopeTypes[ct], coneSize, DMPolytopeTypeGetConeSize(ct)); 8452412e9a14SMatthew G. Knepley } 84539566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 845458723a97SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 845558723a97SMatthew G. Knepley const PetscInt p = closure[cl]; 8456412e9a14SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) ++Nv; 845758723a97SMatthew G. Knepley } 84589566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 8459412e9a14SMatthew G. Knepley /* Special Case: Tensor faces with identified vertices */ 8460412e9a14SMatthew G. Knepley if (Nv < DMPolytopeTypeGetNumVertices(ct)) { 8461412e9a14SMatthew G. Knepley PetscInt unsplit; 846242363296SMatthew G. Knepley 84639566063dSJacob Faibussowitsch PetscCall(DMPlexCellUnsplitVertices_Private(dm, c, ct, &unsplit)); 8464412e9a14SMatthew G. Knepley if (Nv + unsplit == DMPolytopeTypeGetNumVertices(ct)) continue; 846542363296SMatthew G. Knepley } 846663a3b9bcSJacob Faibussowitsch PetscCheck(Nv == DMPolytopeTypeGetNumVertices(ct),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " of type %s has %" PetscInt_FMT " vertices != %" PetscInt_FMT, c, DMPolytopeTypes[ct], Nv, DMPolytopeTypeGetNumVertices(ct)); 846742363296SMatthew G. Knepley } 8468ca8062c8SMatthew G. Knepley PetscFunctionReturn(0); 8469ca8062c8SMatthew G. Knepley } 84709bf0dad6SMatthew G. Knepley 84719bf0dad6SMatthew G. Knepley /*@ 84729bf0dad6SMatthew G. Knepley DMPlexCheckFaces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type 84739bf0dad6SMatthew G. Knepley 84748f6815adSVaclav Hapla Collective 8475899ea2b8SJacob Faibussowitsch 84769bf0dad6SMatthew G. Knepley Input Parameters: 84779bf0dad6SMatthew G. Knepley + dm - The DMPlex object 84789bf0dad6SMatthew G. Knepley - cellHeight - Normally 0 84799bf0dad6SMatthew G. Knepley 848045da879fSVaclav Hapla Notes: 848145da879fSVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 848245da879fSVaclav Hapla This routine is only relevant for meshes that are fully interpolated across all ranks. 848345da879fSVaclav Hapla It will error out if a partially interpolated mesh is given on some rank. 848445da879fSVaclav Hapla It will do nothing for locally uninterpolated mesh (as there is nothing to check). 84859bf0dad6SMatthew G. Knepley 848695eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 848795eb5ee5SVaclav Hapla 84889bf0dad6SMatthew G. Knepley Level: developer 84899bf0dad6SMatthew G. Knepley 8490db781477SPatrick Sanan .seealso: `DMCreate()`, `DMPlexGetVTKCellHeight()`, `DMSetFromOptions()` 84919bf0dad6SMatthew G. Knepley @*/ 849225c50c26SVaclav Hapla PetscErrorCode DMPlexCheckFaces(DM dm, PetscInt cellHeight) 84939bf0dad6SMatthew G. Knepley { 8494ab91121cSMatthew G. Knepley PetscInt dim, depth, vStart, vEnd, cStart, cEnd, c, h; 8495899ea2b8SJacob Faibussowitsch DMPlexInterpolatedFlag interpEnum; 84969bf0dad6SMatthew G. Knepley 84979bf0dad6SMatthew G. Knepley PetscFunctionBegin; 84989bf0dad6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 84998f6815adSVaclav Hapla PetscCall(DMPlexIsInterpolatedCollective(dm, &interpEnum)); 850045da879fSVaclav Hapla if (interpEnum == DMPLEX_INTERPOLATED_NONE) PetscFunctionReturn(0); 85018f6815adSVaclav Hapla if (interpEnum != DMPLEX_INTERPOLATED_FULL) { 85028f6815adSVaclav Hapla PetscPrintf(PetscObjectComm((PetscObject)dm), "DMPlexCheckFaces() warning: Mesh is only partially interpolated, this is currently not supported"); 85038f6815adSVaclav Hapla PetscFunctionReturn(0); 8504899ea2b8SJacob Faibussowitsch } 8505899ea2b8SJacob Faibussowitsch 85069566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 85079566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 85089566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 8509ab91121cSMatthew G. Knepley for (h = cellHeight; h < PetscMin(depth, dim); ++h) { 85109566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, h, &cStart, &cEnd)); 85113554e41dSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 8512412e9a14SMatthew G. Knepley const PetscInt *cone, *ornt, *faceSizes, *faces; 8513412e9a14SMatthew G. Knepley const DMPolytopeType *faceTypes; 8514ba2698f1SMatthew G. Knepley DMPolytopeType ct; 8515412e9a14SMatthew G. Knepley PetscInt numFaces, coneSize, f; 8516412e9a14SMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, numCorners = 0, fOff = 0, unsplit; 85179bf0dad6SMatthew G. Knepley 85189566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &ct)); 85199566063dSJacob Faibussowitsch PetscCall(DMPlexCellUnsplitVertices_Private(dm, c, ct, &unsplit)); 8520412e9a14SMatthew G. Knepley if (unsplit) continue; 85219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 85229566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 85239566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, c, &ornt)); 85249566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 85259bf0dad6SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 85269bf0dad6SMatthew G. Knepley const PetscInt p = closure[cl]; 85279bf0dad6SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) closure[numCorners++] = p; 85289bf0dad6SMatthew G. Knepley } 85299566063dSJacob Faibussowitsch PetscCall(DMPlexGetRawFaces_Internal(dm, ct, closure, &numFaces, &faceTypes, &faceSizes, &faces)); 853063a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == numFaces,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " of type %s has %" PetscInt_FMT " faces but should have %" PetscInt_FMT, c, DMPolytopeTypes[ct], coneSize, numFaces); 85319bf0dad6SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 8532d4961f80SStefano Zampini DMPolytopeType fct; 85339bf0dad6SMatthew G. Knepley PetscInt *fclosure = NULL, fclosureSize, cl, fnumCorners = 0, v; 85349bf0dad6SMatthew G. Knepley 85359566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[f], &fct)); 85369566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure_Internal(dm, cone[f], ornt[f], PETSC_TRUE, &fclosureSize, &fclosure)); 85379bf0dad6SMatthew G. Knepley for (cl = 0; cl < fclosureSize*2; cl += 2) { 85389bf0dad6SMatthew G. Knepley const PetscInt p = fclosure[cl]; 85399bf0dad6SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) fclosure[fnumCorners++] = p; 85409bf0dad6SMatthew G. Knepley } 854163a3b9bcSJacob Faibussowitsch PetscCheck(fnumCorners == faceSizes[f],PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " of type %s (cone idx %" PetscInt_FMT ") of cell %" PetscInt_FMT " of type %s has %" PetscInt_FMT " vertices but should have %" PetscInt_FMT, cone[f], DMPolytopeTypes[fct], f, c, DMPolytopeTypes[ct], fnumCorners, faceSizes[f]); 85429bf0dad6SMatthew G. Knepley for (v = 0; v < fnumCorners; ++v) { 8543b5a892a1SMatthew G. Knepley if (fclosure[v] != faces[fOff+v]) { 8544b5a892a1SMatthew G. Knepley PetscInt v1; 8545b5a892a1SMatthew G. Knepley 85469566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "face closure:")); 854763a3b9bcSJacob Faibussowitsch for (v1 = 0; v1 < fnumCorners; ++v1) PetscCall(PetscPrintf(PETSC_COMM_SELF, " %" PetscInt_FMT, fclosure[v1])); 85489566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\ncell face:")); 854963a3b9bcSJacob Faibussowitsch for (v1 = 0; v1 < fnumCorners; ++v1) PetscCall(PetscPrintf(PETSC_COMM_SELF, " %" PetscInt_FMT, faces[fOff+v1])); 85509566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 855163a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " of type %s (cone idx %" PetscInt_FMT ", ornt %" PetscInt_FMT ") of cell %" PetscInt_FMT " of type %s vertex %" PetscInt_FMT ", %" PetscInt_FMT " != %" PetscInt_FMT, cone[f], DMPolytopeTypes[fct], f, ornt[f], c, DMPolytopeTypes[ct], v, fclosure[v], faces[fOff+v]); 8552b5a892a1SMatthew G. Knepley } 85539bf0dad6SMatthew G. Knepley } 85549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[f], PETSC_TRUE, &fclosureSize, &fclosure)); 8555412e9a14SMatthew G. Knepley fOff += faceSizes[f]; 85569bf0dad6SMatthew G. Knepley } 85579566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreRawFaces_Internal(dm, ct, closure, &numFaces, &faceTypes, &faceSizes, &faces)); 85589566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure)); 85599bf0dad6SMatthew G. Knepley } 85603554e41dSMatthew G. Knepley } 8561552f7358SJed Brown PetscFunctionReturn(0); 8562552f7358SJed Brown } 85633913d7c8SMatthew G. Knepley 8564bb6a34a8SMatthew G. Knepley /*@ 8565bb6a34a8SMatthew G. Knepley DMPlexCheckGeometry - Check the geometry of mesh cells 8566bb6a34a8SMatthew G. Knepley 8567bb6a34a8SMatthew G. Knepley Input Parameter: 8568bb6a34a8SMatthew G. Knepley . dm - The DMPlex object 8569bb6a34a8SMatthew G. Knepley 857095eb5ee5SVaclav Hapla Notes: 857195eb5ee5SVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 857295eb5ee5SVaclav Hapla 857395eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 8574bb6a34a8SMatthew G. Knepley 8575bb6a34a8SMatthew G. Knepley Level: developer 8576bb6a34a8SMatthew G. Knepley 8577db781477SPatrick Sanan .seealso: `DMCreate()`, `DMSetFromOptions()` 8578bb6a34a8SMatthew G. Knepley @*/ 8579bb6a34a8SMatthew G. Knepley PetscErrorCode DMPlexCheckGeometry(DM dm) 8580bb6a34a8SMatthew G. Knepley { 8581a2a9e04cSMatthew G. Knepley Vec coordinates; 8582bb6a34a8SMatthew G. Knepley PetscReal detJ, J[9], refVol = 1.0; 8583bb6a34a8SMatthew G. Knepley PetscReal vol; 8584412e9a14SMatthew G. Knepley PetscBool periodic; 858551a74b61SMatthew G. Knepley PetscInt dim, depth, dE, d, cStart, cEnd, c; 8586bb6a34a8SMatthew G. Knepley 8587bb6a34a8SMatthew G. Knepley PetscFunctionBegin; 85889566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 85899566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 859051a74b61SMatthew G. Knepley if (dim != dE) PetscFunctionReturn(0); 85919566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 85929566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &periodic, NULL, NULL, NULL)); 8593bb6a34a8SMatthew G. Knepley for (d = 0; d < dim; ++d) refVol *= 2.0; 85949566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 8595a2a9e04cSMatthew G. Knepley /* Make sure local coordinates are created, because that step is collective */ 85969566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 8597412e9a14SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 8598412e9a14SMatthew G. Knepley DMPolytopeType ct; 8599412e9a14SMatthew G. Knepley PetscInt unsplit; 8600412e9a14SMatthew G. Knepley PetscBool ignoreZeroVol = PETSC_FALSE; 8601412e9a14SMatthew G. Knepley 86029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, c, &ct)); 8603412e9a14SMatthew G. Knepley switch (ct) { 8604412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 8605412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 8606412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 8607412e9a14SMatthew G. Knepley ignoreZeroVol = PETSC_TRUE; break; 8608412e9a14SMatthew G. Knepley default: break; 8609412e9a14SMatthew G. Knepley } 8610412e9a14SMatthew G. Knepley switch (ct) { 8611412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM: 8612412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 8613412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 8614a2a9e04cSMatthew G. Knepley case DM_POLYTOPE_PYRAMID: 8615412e9a14SMatthew G. Knepley continue; 8616412e9a14SMatthew G. Knepley default: break; 8617412e9a14SMatthew G. Knepley } 86189566063dSJacob Faibussowitsch PetscCall(DMPlexCellUnsplitVertices_Private(dm, c, ct, &unsplit)); 8619412e9a14SMatthew G. Knepley if (unsplit) continue; 86209566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, NULL, J, NULL, &detJ)); 86211dca8a05SBarry Smith PetscCheck(detJ >= -PETSC_SMALL && (detJ > 0.0 || ignoreZeroVol),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mesh cell %" PetscInt_FMT " of type %s is inverted, |J| = %g", c, DMPolytopeTypes[ct], (double) detJ); 862263a3b9bcSJacob Faibussowitsch PetscCall(PetscInfo(dm, "Cell %" PetscInt_FMT " FEM Volume %g\n", c, (double)(detJ*refVol))); 8623412e9a14SMatthew G. Knepley if (depth > 1 && !periodic) { 86249566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFVM(dm, c, &vol, NULL, NULL)); 86251dca8a05SBarry Smith PetscCheck(vol >= -PETSC_SMALL && (vol > 0.0 || ignoreZeroVol),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mesh cell %" PetscInt_FMT " of type %s is inverted, vol = %g", c, DMPolytopeTypes[ct], (double) vol); 862663a3b9bcSJacob Faibussowitsch PetscCall(PetscInfo(dm, "Cell %" PetscInt_FMT " FVM Volume %g\n", c, (double) vol)); 8627bb6a34a8SMatthew G. Knepley } 8628bb6a34a8SMatthew G. Knepley } 8629bb6a34a8SMatthew G. Knepley PetscFunctionReturn(0); 8630bb6a34a8SMatthew G. Knepley } 8631bb6a34a8SMatthew G. Knepley 863203da9461SVaclav Hapla /*@ 86337726db96SVaclav Hapla DMPlexCheckPointSF - Check that several necessary conditions are met for the Point SF of this plex. 86347726db96SVaclav Hapla 86357726db96SVaclav Hapla Collective 863603da9461SVaclav Hapla 863703da9461SVaclav Hapla Input Parameters: 86387726db96SVaclav Hapla + dm - The DMPlex object 86397726db96SVaclav Hapla - pointSF - The Point SF, or NULL for Point SF attached to DM 864003da9461SVaclav Hapla 8641e83a0d2dSVaclav Hapla Notes: 8642e83a0d2dSVaclav Hapla This is mainly intended for debugging/testing purposes. 864303da9461SVaclav Hapla 864495eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 864595eb5ee5SVaclav Hapla 864603da9461SVaclav Hapla Level: developer 864703da9461SVaclav Hapla 8648db781477SPatrick Sanan .seealso: `DMGetPointSF()`, `DMSetFromOptions()` 864903da9461SVaclav Hapla @*/ 86507726db96SVaclav Hapla PetscErrorCode DMPlexCheckPointSF(DM dm, PetscSF pointSF) 865103da9461SVaclav Hapla { 86527726db96SVaclav Hapla PetscInt l, nleaves, nroots, overlap; 86537726db96SVaclav Hapla const PetscInt *locals; 86547726db96SVaclav Hapla const PetscSFNode *remotes; 8655f0cfc026SVaclav Hapla PetscBool distributed; 86567726db96SVaclav Hapla MPI_Comm comm; 86577726db96SVaclav Hapla PetscMPIInt rank; 865803da9461SVaclav Hapla 865903da9461SVaclav Hapla PetscFunctionBegin; 866003da9461SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86617726db96SVaclav Hapla if (pointSF) PetscValidHeaderSpecific(pointSF, PETSCSF_CLASSID, 2); 86627726db96SVaclav Hapla else pointSF = dm->sf; 86637726db96SVaclav Hapla PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 86647726db96SVaclav Hapla PetscCheck(pointSF, comm, PETSC_ERR_ARG_WRONGSTATE, "DMPlex must have Point SF attached"); 86657726db96SVaclav Hapla PetscCallMPI(MPI_Comm_rank(comm, &rank)); 86667726db96SVaclav Hapla { 86677726db96SVaclav Hapla PetscMPIInt mpiFlag; 86687726db96SVaclav Hapla 86697726db96SVaclav Hapla PetscCallMPI(MPI_Comm_compare(comm, PetscObjectComm((PetscObject)pointSF),&mpiFlag)); 86707726db96SVaclav Hapla PetscCheck(mpiFlag == MPI_CONGRUENT || mpiFlag == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "DM and Point SF have different communicators (flag %d)",mpiFlag); 86717726db96SVaclav Hapla } 86727726db96SVaclav Hapla PetscCall(PetscSFGetGraph(pointSF, &nroots, &nleaves, &locals, &remotes)); 86739566063dSJacob Faibussowitsch PetscCall(DMPlexIsDistributed(dm, &distributed)); 86747726db96SVaclav Hapla if (!distributed) { 86757726db96SVaclav Hapla PetscCheck(nroots < 0 || nleaves == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Undistributed DMPlex cannot have non-empty PointSF (has %" PetscInt_FMT " roots, %" PetscInt_FMT " leaves)", nroots, nleaves); 86768918e3e2SVaclav Hapla PetscFunctionReturn(0); 86778918e3e2SVaclav Hapla } 86787726db96SVaclav Hapla PetscCheck(nroots >= 0, comm, PETSC_ERR_ARG_WRONGSTATE, "This DMPlex is distributed but its PointSF has no graph set (has %" PetscInt_FMT " roots, %" PetscInt_FMT " leaves)", nroots, nleaves); 86797726db96SVaclav Hapla PetscCall(DMPlexGetOverlap(dm, &overlap)); 868003da9461SVaclav Hapla 86817726db96SVaclav Hapla /* Check SF graph is compatible with DMPlex chart */ 86827726db96SVaclav Hapla { 86837726db96SVaclav Hapla PetscInt pStart, pEnd, maxLeaf; 86847726db96SVaclav Hapla 86857726db96SVaclav Hapla PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 86867726db96SVaclav Hapla PetscCall(PetscSFGetLeafRange(pointSF, NULL, &maxLeaf)); 86877726db96SVaclav Hapla PetscCheck(pEnd - pStart == nroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "pEnd - pStart = %" PetscInt_FMT " != nroots = %" PetscInt_FMT, pEnd-pStart, nroots); 86887726db96SVaclav Hapla PetscCheck(maxLeaf < pEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "maxLeaf = %" PetscInt_FMT " >= pEnd = %" PetscInt_FMT, maxLeaf, pEnd); 86897726db96SVaclav Hapla } 86907726db96SVaclav Hapla 86917726db96SVaclav Hapla /* Check Point SF has no local points referenced */ 86927726db96SVaclav Hapla for (l = 0; l < nleaves; l++) { 86937726db96SVaclav Hapla PetscAssert(remotes[l].rank != (PetscInt) rank, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains local point %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")", locals ? locals[l] : l, remotes[l].rank, remotes[l].index); 86947726db96SVaclav Hapla } 86957726db96SVaclav Hapla 86967726db96SVaclav Hapla /* Check there are no cells in interface */ 86977726db96SVaclav Hapla if (!overlap) { 86987726db96SVaclav Hapla PetscInt cellHeight, cStart, cEnd; 86997726db96SVaclav Hapla 87009566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 87019566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 8702f5869d18SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 87037726db96SVaclav Hapla const PetscInt point = locals ? locals[l] : l; 8704f5869d18SMatthew G. Knepley 87057726db96SVaclav Hapla PetscCheck(point < cStart || point >= cEnd, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %" PetscInt_FMT " which is a cell", point); 87067726db96SVaclav Hapla } 870703da9461SVaclav Hapla } 8708ece87651SVaclav Hapla 87097726db96SVaclav Hapla /* If some point is in interface, then all its cone points must be also in interface (either as leaves or roots) */ 87107726db96SVaclav Hapla { 87117726db96SVaclav Hapla const PetscInt *rootdegree; 87127726db96SVaclav Hapla 87137726db96SVaclav Hapla PetscCall(PetscSFComputeDegreeBegin(pointSF, &rootdegree)); 87147726db96SVaclav Hapla PetscCall(PetscSFComputeDegreeEnd(pointSF, &rootdegree)); 8715f5869d18SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 87167726db96SVaclav Hapla const PetscInt point = locals ? locals[l] : l; 8717f5869d18SMatthew G. Knepley const PetscInt *cone; 8718f5869d18SMatthew G. Knepley PetscInt coneSize, c, idx; 8719f5869d18SMatthew G. Knepley 87209566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 87219566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 8722f5869d18SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 8723f5869d18SMatthew G. Knepley if (!rootdegree[cone[c]]) { 87247726db96SVaclav Hapla if (locals) { 87259566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], nleaves, locals, &idx)); 87267726db96SVaclav Hapla } else { 87277726db96SVaclav Hapla idx = (cone[c] < nleaves) ? cone[c] : -1; 87287726db96SVaclav Hapla } 872963a3b9bcSJacob Faibussowitsch PetscCheck(idx >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %" PetscInt_FMT " but not %" PetscInt_FMT " from its cone", point, cone[c]); 8730f5869d18SMatthew G. Knepley } 8731f5869d18SMatthew G. Knepley } 8732ece87651SVaclav Hapla } 87337726db96SVaclav Hapla } 873403da9461SVaclav Hapla PetscFunctionReturn(0); 873503da9461SVaclav Hapla } 873603da9461SVaclav Hapla 87377f9d8d6cSVaclav Hapla /*@ 87387f9d8d6cSVaclav Hapla DMPlexCheck - Perform various checks of Plex sanity 87397f9d8d6cSVaclav Hapla 87407f9d8d6cSVaclav Hapla Input Parameter: 87417f9d8d6cSVaclav Hapla . dm - The DMPlex object 87427f9d8d6cSVaclav Hapla 87437f9d8d6cSVaclav Hapla Notes: 87447f9d8d6cSVaclav Hapla This is a useful diagnostic when creating meshes programmatically. 87457f9d8d6cSVaclav Hapla 87467f9d8d6cSVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 87477f9d8d6cSVaclav Hapla 87487f9d8d6cSVaclav Hapla Currently does not include DMPlexCheckCellShape(). 87497f9d8d6cSVaclav Hapla 87507f9d8d6cSVaclav Hapla Level: developer 87517f9d8d6cSVaclav Hapla 87527f9d8d6cSVaclav Hapla .seealso: DMCreate(), DMSetFromOptions() 87537f9d8d6cSVaclav Hapla @*/ 87547f9d8d6cSVaclav Hapla PetscErrorCode DMPlexCheck(DM dm) 8755b5a892a1SMatthew G. Knepley { 87567f9d8d6cSVaclav Hapla PetscInt cellHeight; 87577f9d8d6cSVaclav Hapla 8758b5a892a1SMatthew G. Knepley PetscFunctionBegin; 87597f9d8d6cSVaclav Hapla PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 87609566063dSJacob Faibussowitsch PetscCall(DMPlexCheckSymmetry(dm)); 87619566063dSJacob Faibussowitsch PetscCall(DMPlexCheckSkeleton(dm, cellHeight)); 87629566063dSJacob Faibussowitsch PetscCall(DMPlexCheckFaces(dm, cellHeight)); 87639566063dSJacob Faibussowitsch PetscCall(DMPlexCheckGeometry(dm)); 87647726db96SVaclav Hapla PetscCall(DMPlexCheckPointSF(dm, NULL)); 87659566063dSJacob Faibussowitsch PetscCall(DMPlexCheckInterfaceCones(dm)); 8766b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 8767b5a892a1SMatthew G. Knepley } 8768b5a892a1SMatthew G. Knepley 8769068a5610SStefano Zampini typedef struct cell_stats 8770068a5610SStefano Zampini { 8771068a5610SStefano Zampini PetscReal min, max, sum, squaresum; 8772068a5610SStefano Zampini PetscInt count; 8773068a5610SStefano Zampini } cell_stats_t; 8774068a5610SStefano Zampini 877525befc3bSSatish Balay static void MPIAPI cell_stats_reduce(void *a, void *b, int * len, MPI_Datatype *datatype) 8776068a5610SStefano Zampini { 8777068a5610SStefano Zampini PetscInt i, N = *len; 8778068a5610SStefano Zampini 8779068a5610SStefano Zampini for (i = 0; i < N; i++) { 8780068a5610SStefano Zampini cell_stats_t *A = (cell_stats_t *) a; 8781068a5610SStefano Zampini cell_stats_t *B = (cell_stats_t *) b; 8782068a5610SStefano Zampini 8783068a5610SStefano Zampini B->min = PetscMin(A->min,B->min); 8784068a5610SStefano Zampini B->max = PetscMax(A->max,B->max); 8785068a5610SStefano Zampini B->sum += A->sum; 8786068a5610SStefano Zampini B->squaresum += A->squaresum; 8787068a5610SStefano Zampini B->count += A->count; 8788068a5610SStefano Zampini } 8789068a5610SStefano Zampini } 8790068a5610SStefano Zampini 8791068a5610SStefano Zampini /*@ 879243fa8764SMatthew G. Knepley DMPlexCheckCellShape - Checks the Jacobian of the mapping from reference to real cells and computes some minimal statistics. 8793068a5610SStefano Zampini 87948261a58bSMatthew G. Knepley Collective on dm 87958261a58bSMatthew G. Knepley 8796068a5610SStefano Zampini Input Parameters: 8797068a5610SStefano Zampini + dm - The DMPlex object 879843fa8764SMatthew G. Knepley . output - If true, statistics will be displayed on stdout 879943fa8764SMatthew G. Knepley - condLimit - Display all cells above this condition number, or PETSC_DETERMINE for no cell output 8800068a5610SStefano Zampini 880195eb5ee5SVaclav Hapla Notes: 880295eb5ee5SVaclav Hapla This is mainly intended for debugging/testing purposes. 880395eb5ee5SVaclav Hapla 880495eb5ee5SVaclav Hapla For the complete list of DMPlexCheck* functions, see DMSetFromOptions(). 8805068a5610SStefano Zampini 8806068a5610SStefano Zampini Level: developer 8807068a5610SStefano Zampini 8808db781477SPatrick Sanan .seealso: `DMSetFromOptions()`, `DMPlexComputeOrthogonalQuality()` 8809068a5610SStefano Zampini @*/ 881043fa8764SMatthew G. Knepley PetscErrorCode DMPlexCheckCellShape(DM dm, PetscBool output, PetscReal condLimit) 8811068a5610SStefano Zampini { 8812068a5610SStefano Zampini DM dmCoarse; 881343fa8764SMatthew G. Knepley cell_stats_t stats, globalStats; 881443fa8764SMatthew G. Knepley MPI_Comm comm = PetscObjectComm((PetscObject)dm); 881543fa8764SMatthew G. Knepley PetscReal *J, *invJ, min = 0, max = 0, mean = 0, stdev = 0; 881643fa8764SMatthew G. Knepley PetscReal limit = condLimit > 0 ? condLimit : PETSC_MAX_REAL; 8817412e9a14SMatthew G. Knepley PetscInt cdim, cStart, cEnd, c, eStart, eEnd, count = 0; 881843fa8764SMatthew G. Knepley PetscMPIInt rank,size; 8819068a5610SStefano Zampini 8820068a5610SStefano Zampini PetscFunctionBegin; 8821068a5610SStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8822068a5610SStefano Zampini stats.min = PETSC_MAX_REAL; 8823068a5610SStefano Zampini stats.max = PETSC_MIN_REAL; 8824068a5610SStefano Zampini stats.sum = stats.squaresum = 0.; 8825068a5610SStefano Zampini stats.count = 0; 8826068a5610SStefano Zampini 88279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 88289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 88299566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm,&cdim)); 88309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(PetscSqr(cdim), &J, PetscSqr(cdim), &invJ)); 88319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm,0,&cStart,&cEnd)); 88329566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,1,&eStart,&eEnd)); 8833412e9a14SMatthew G. Knepley for (c = cStart; c < cEnd; c++) { 8834068a5610SStefano Zampini PetscInt i; 8835068a5610SStefano Zampini PetscReal frobJ = 0., frobInvJ = 0., cond2, cond, detJ; 8836068a5610SStefano Zampini 88379566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryAffineFEM(dm,c,NULL,J,invJ,&detJ)); 883863a3b9bcSJacob Faibussowitsch PetscCheck(detJ >= 0.0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mesh cell %" PetscInt_FMT " is inverted", c); 883943fa8764SMatthew G. Knepley for (i = 0; i < PetscSqr(cdim); ++i) { 8840068a5610SStefano Zampini frobJ += J[i] * J[i]; 8841068a5610SStefano Zampini frobInvJ += invJ[i] * invJ[i]; 8842068a5610SStefano Zampini } 8843068a5610SStefano Zampini cond2 = frobJ * frobInvJ; 8844068a5610SStefano Zampini cond = PetscSqrtReal(cond2); 8845068a5610SStefano Zampini 8846068a5610SStefano Zampini stats.min = PetscMin(stats.min,cond); 8847068a5610SStefano Zampini stats.max = PetscMax(stats.max,cond); 8848068a5610SStefano Zampini stats.sum += cond; 8849068a5610SStefano Zampini stats.squaresum += cond2; 8850068a5610SStefano Zampini stats.count++; 88518261a58bSMatthew G. Knepley if (output && cond > limit) { 885243fa8764SMatthew G. Knepley PetscSection coordSection; 885343fa8764SMatthew G. Knepley Vec coordsLocal; 885443fa8764SMatthew G. Knepley PetscScalar *coords = NULL; 885543fa8764SMatthew G. Knepley PetscInt Nv, d, clSize, cl, *closure = NULL; 885643fa8764SMatthew G. Knepley 88579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordsLocal)); 88589566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 88599566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, coordSection, coordsLocal, c, &Nv, &coords)); 886063a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "[%d] Cell %" PetscInt_FMT " cond %g\n", rank, c, (double) cond)); 886143fa8764SMatthew G. Knepley for (i = 0; i < Nv/cdim; ++i) { 886263a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, " Vertex %" PetscInt_FMT ": (", i)); 886343fa8764SMatthew G. Knepley for (d = 0; d < cdim; ++d) { 88649566063dSJacob Faibussowitsch if (d > 0) PetscCall(PetscSynchronizedPrintf(comm, ", ")); 88659566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "%g", (double) PetscRealPart(coords[i*cdim+d]))); 886643fa8764SMatthew G. Knepley } 88679566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, ")\n")); 886843fa8764SMatthew G. Knepley } 88699566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure)); 887043fa8764SMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 887143fa8764SMatthew G. Knepley const PetscInt edge = closure[cl]; 887243fa8764SMatthew G. Knepley 887343fa8764SMatthew G. Knepley if ((edge >= eStart) && (edge < eEnd)) { 887443fa8764SMatthew G. Knepley PetscReal len; 887543fa8764SMatthew G. Knepley 88769566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFVM(dm, edge, &len, NULL, NULL)); 887763a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, " Edge %" PetscInt_FMT ": length %g\n", edge, (double) len)); 887843fa8764SMatthew G. Knepley } 887943fa8764SMatthew G. Knepley } 88809566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure)); 88819566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, coordSection, coordsLocal, c, &Nv, &coords)); 888243fa8764SMatthew G. Knepley } 8883068a5610SStefano Zampini } 88849566063dSJacob Faibussowitsch if (output) PetscCall(PetscSynchronizedFlush(comm, NULL)); 8885068a5610SStefano Zampini 8886068a5610SStefano Zampini if (size > 1) { 8887068a5610SStefano Zampini PetscMPIInt blockLengths[2] = {4,1}; 8888068a5610SStefano Zampini MPI_Aint blockOffsets[2] = {offsetof(cell_stats_t,min),offsetof(cell_stats_t,count)}; 8889068a5610SStefano Zampini MPI_Datatype blockTypes[2] = {MPIU_REAL,MPIU_INT}, statType; 8890068a5610SStefano Zampini MPI_Op statReduce; 8891068a5610SStefano Zampini 88929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_struct(2,blockLengths,blockOffsets,blockTypes,&statType)); 88939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&statType)); 88949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(cell_stats_reduce, PETSC_TRUE, &statReduce)); 88959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&stats,&globalStats,1,statType,statReduce,0,comm)); 88969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&statReduce)); 88979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&statType)); 8898068a5610SStefano Zampini } else { 88999566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(&globalStats,&stats,1)); 8900068a5610SStefano Zampini } 8901dd400576SPatrick Sanan if (rank == 0) { 8902068a5610SStefano Zampini count = globalStats.count; 8903068a5610SStefano Zampini min = globalStats.min; 8904068a5610SStefano Zampini max = globalStats.max; 8905068a5610SStefano Zampini mean = globalStats.sum / globalStats.count; 8906068a5610SStefano Zampini stdev = globalStats.count > 1 ? PetscSqrtReal(PetscMax((globalStats.squaresum - globalStats.count * mean * mean) / (globalStats.count - 1),0)) : 0.0; 8907068a5610SStefano Zampini } 8908068a5610SStefano Zampini 8909068a5610SStefano Zampini if (output) { 891063a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(comm,"Mesh with %" PetscInt_FMT " cells, shape condition numbers: min = %g, max = %g, mean = %g, stddev = %g\n", count, (double) min, (double) max, (double) mean, (double) stdev)); 8911068a5610SStefano Zampini } 89129566063dSJacob Faibussowitsch PetscCall(PetscFree2(J,invJ)); 8913068a5610SStefano Zampini 89149566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dm,&dmCoarse)); 8915068a5610SStefano Zampini if (dmCoarse) { 8916068a5610SStefano Zampini PetscBool isplex; 8917068a5610SStefano Zampini 89189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dmCoarse,DMPLEX,&isplex)); 8919068a5610SStefano Zampini if (isplex) { 89209566063dSJacob Faibussowitsch PetscCall(DMPlexCheckCellShape(dmCoarse,output,condLimit)); 8921068a5610SStefano Zampini } 8922068a5610SStefano Zampini } 8923068a5610SStefano Zampini PetscFunctionReturn(0); 8924068a5610SStefano Zampini } 8925068a5610SStefano Zampini 8926f108dbd7SJacob Faibussowitsch /*@ 8927f108dbd7SJacob Faibussowitsch DMPlexComputeOrthogonalQuality - Compute cell-wise orthogonal quality mesh statistic. Optionally tags all cells with 8928f108dbd7SJacob Faibussowitsch orthogonal quality below given tolerance. 8929f108dbd7SJacob Faibussowitsch 89306ed19f2fSJacob Faibussowitsch Collective on dm 8931f108dbd7SJacob Faibussowitsch 8932f108dbd7SJacob Faibussowitsch Input Parameters: 8933f108dbd7SJacob Faibussowitsch + dm - The DMPlex object 8934f108dbd7SJacob Faibussowitsch . fv - Optional PetscFV object for pre-computed cell/face centroid information 8935f108dbd7SJacob Faibussowitsch - atol - [0, 1] Absolute tolerance for tagging cells. 8936f108dbd7SJacob Faibussowitsch 8937f108dbd7SJacob Faibussowitsch Output Parameters: 8938f108dbd7SJacob Faibussowitsch + OrthQual - Vec containing orthogonal quality per cell 8939f108dbd7SJacob Faibussowitsch - OrthQualLabel - DMLabel tagging cells below atol with DM_ADAPT_REFINE 8940f108dbd7SJacob Faibussowitsch 8941f108dbd7SJacob Faibussowitsch Options Database Keys: 8942f108dbd7SJacob Faibussowitsch + -dm_plex_orthogonal_quality_label_view - view OrthQualLabel if label is requested. Currently only PETSCVIEWERASCII is 8943f108dbd7SJacob Faibussowitsch supported. 8944f108dbd7SJacob Faibussowitsch - -dm_plex_orthogonal_quality_vec_view - view OrthQual vector. 8945f108dbd7SJacob Faibussowitsch 8946f108dbd7SJacob Faibussowitsch Notes: 8947f108dbd7SJacob Faibussowitsch Orthogonal quality is given by the following formula: 8948f108dbd7SJacob Faibussowitsch 8949f108dbd7SJacob Faibussowitsch \min \left[ \frac{A_i \cdot f_i}{\|A_i\| \|f_i\|} , \frac{A_i \cdot c_i}{\|A_i\| \|c_i\|} \right] 8950f108dbd7SJacob Faibussowitsch 8951f108dbd7SJacob Faibussowitsch Where A_i is the i'th face-normal vector, f_i is the vector from the cell centroid to the i'th face centroid, and c_i 8952f108dbd7SJacob Faibussowitsch is the vector from the current cells centroid to the centroid of its i'th neighbor (which shares a face with the 8953f108dbd7SJacob Faibussowitsch current cell). This computes the vector similarity between each cell face and its corresponding neighbor centroid by 8954f108dbd7SJacob Faibussowitsch calculating the cosine of the angle between these vectors. 8955f108dbd7SJacob Faibussowitsch 8956f108dbd7SJacob Faibussowitsch Orthogonal quality ranges from 1 (best) to 0 (worst). 8957f108dbd7SJacob Faibussowitsch 8958f108dbd7SJacob Faibussowitsch This routine is mainly useful for FVM, however is not restricted to only FVM. The PetscFV object is optionally used to check for 8959f108dbd7SJacob Faibussowitsch pre-computed FVM cell data, but if it is not passed in then this data will be computed. 8960f108dbd7SJacob Faibussowitsch 8961f108dbd7SJacob Faibussowitsch Cells are tagged if they have an orthogonal quality less than or equal to the absolute tolerance. 8962f108dbd7SJacob Faibussowitsch 8963f108dbd7SJacob Faibussowitsch Level: intermediate 8964f108dbd7SJacob Faibussowitsch 8965db781477SPatrick Sanan .seealso: `DMPlexCheckCellShape()`, `DMCreateLabel()` 8966f108dbd7SJacob Faibussowitsch @*/ 8967f108dbd7SJacob Faibussowitsch PetscErrorCode DMPlexComputeOrthogonalQuality(DM dm, PetscFV fv, PetscReal atol, Vec *OrthQual, DMLabel *OrthQualLabel) 8968f108dbd7SJacob Faibussowitsch { 89696ed19f2fSJacob Faibussowitsch PetscInt nc, cellHeight, cStart, cEnd, cell, cellIter = 0; 89706ed19f2fSJacob Faibussowitsch PetscInt *idx; 89716ed19f2fSJacob Faibussowitsch PetscScalar *oqVals; 8972f108dbd7SJacob Faibussowitsch const PetscScalar *cellGeomArr, *faceGeomArr; 89736ed19f2fSJacob Faibussowitsch PetscReal *ci, *fi, *Ai; 8974f108dbd7SJacob Faibussowitsch MPI_Comm comm; 8975f108dbd7SJacob Faibussowitsch Vec cellgeom, facegeom; 8976f108dbd7SJacob Faibussowitsch DM dmFace, dmCell; 8977f108dbd7SJacob Faibussowitsch IS glob; 8978f108dbd7SJacob Faibussowitsch ISLocalToGlobalMapping ltog; 8979f108dbd7SJacob Faibussowitsch PetscViewer vwr; 8980f108dbd7SJacob Faibussowitsch 8981f108dbd7SJacob Faibussowitsch PetscFunctionBegin; 8982f108dbd7SJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89836ed19f2fSJacob Faibussowitsch if (fv) {PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);} 8984f108dbd7SJacob Faibussowitsch PetscValidPointer(OrthQual, 4); 89856bdcaf15SBarry Smith PetscCheck(atol >= 0.0 && atol <= 1.0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Absolute tolerance %g not in [0,1]",(double)atol); 89869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 89879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &nc)); 898863a3b9bcSJacob Faibussowitsch PetscCheck(nc >= 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM must have dimension >= 2 (current %" PetscInt_FMT ")", nc); 89896ed19f2fSJacob Faibussowitsch { 89906ed19f2fSJacob Faibussowitsch DMPlexInterpolatedFlag interpFlag; 89916ed19f2fSJacob Faibussowitsch 89929566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpFlag)); 8993f108dbd7SJacob Faibussowitsch if (interpFlag != DMPLEX_INTERPOLATED_FULL) { 8994f108dbd7SJacob Faibussowitsch PetscMPIInt rank; 8995f108dbd7SJacob Faibussowitsch 89969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 899798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM must be fully interpolated, DM on rank %d is not fully interpolated", rank); 8998f108dbd7SJacob Faibussowitsch } 89996ed19f2fSJacob Faibussowitsch } 9000f108dbd7SJacob Faibussowitsch if (OrthQualLabel) { 9001f108dbd7SJacob Faibussowitsch PetscValidPointer(OrthQualLabel, 5); 90029566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, "Orthogonal_Quality")); 90039566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "Orthogonal_Quality", OrthQualLabel)); 90046ed19f2fSJacob Faibussowitsch } else {*OrthQualLabel = NULL;} 90059566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 90069566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 90079566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCellNumbering_Internal(dm, PETSC_TRUE, &glob)); 90089566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(glob, <og)); 90099566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(ltog, ISLOCALTOGLOBALMAPPINGHASH)); 90109566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, OrthQual)); 90119566063dSJacob Faibussowitsch PetscCall(VecSetType(*OrthQual, VECSTANDARD)); 90129566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*OrthQual, cEnd-cStart, PETSC_DETERMINE)); 90139566063dSJacob Faibussowitsch PetscCall(VecSetLocalToGlobalMapping(*OrthQual, ltog)); 90149566063dSJacob Faibussowitsch PetscCall(VecSetUp(*OrthQual)); 90159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 90169566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<og)); 90179566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(dm, fv, &cellgeom, &facegeom, NULL)); 90189566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellgeom, &cellGeomArr)); 90199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(facegeom, &faceGeomArr)); 90209566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellgeom, &dmCell)); 90219566063dSJacob Faibussowitsch PetscCall(VecGetDM(facegeom, &dmFace)); 90229566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(cEnd-cStart, &idx, cEnd-cStart, &oqVals, nc, &ci, nc, &fi, nc, &Ai)); 90236ed19f2fSJacob Faibussowitsch for (cell = cStart; cell < cEnd; cellIter++,cell++) { 90246ed19f2fSJacob Faibussowitsch PetscInt cellneigh, cellneighiter = 0, adjSize = PETSC_DETERMINE; 9025f108dbd7SJacob Faibussowitsch PetscInt cellarr[2], *adj = NULL; 9026f108dbd7SJacob Faibussowitsch PetscScalar *cArr, *fArr; 9027898cd552SSatish Balay PetscReal minvalc = 1.0, minvalf = 1.0; 9028f108dbd7SJacob Faibussowitsch PetscFVCellGeom *cg; 9029f108dbd7SJacob Faibussowitsch 90306ed19f2fSJacob Faibussowitsch idx[cellIter] = cell-cStart; 9031f108dbd7SJacob Faibussowitsch cellarr[0] = cell; 9032f108dbd7SJacob Faibussowitsch /* Make indexing into cellGeom easier */ 90339566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cell, cellGeomArr, &cg)); 90349566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Internal(dm, cell, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &adjSize, &adj)); 9035f108dbd7SJacob Faibussowitsch /* Technically 1 too big, but easier than fiddling with empty adjacency array */ 90369566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(adjSize, &cArr, adjSize, &fArr)); 90376ed19f2fSJacob Faibussowitsch for (cellneigh = 0; cellneigh < adjSize; cellneighiter++,cellneigh++) { 90386ed19f2fSJacob Faibussowitsch PetscInt i; 90396ed19f2fSJacob Faibussowitsch const PetscInt neigh = adj[cellneigh]; 9040f108dbd7SJacob Faibussowitsch PetscReal normci = 0, normfi = 0, normai = 0; 9041f108dbd7SJacob Faibussowitsch PetscFVCellGeom *cgneigh; 9042f108dbd7SJacob Faibussowitsch PetscFVFaceGeom *fg; 9043f108dbd7SJacob Faibussowitsch 9044f108dbd7SJacob Faibussowitsch /* Don't count ourselves in the neighbor list */ 9045f108dbd7SJacob Faibussowitsch if (neigh == cell) continue; 90469566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, neigh, cellGeomArr, &cgneigh)); 9047f108dbd7SJacob Faibussowitsch cellarr[1] = neigh; 90486ed19f2fSJacob Faibussowitsch { 90496ed19f2fSJacob Faibussowitsch PetscInt numcovpts; 90506ed19f2fSJacob Faibussowitsch const PetscInt *covpts; 90516ed19f2fSJacob Faibussowitsch 90529566063dSJacob Faibussowitsch PetscCall(DMPlexGetMeet(dm, 2, cellarr, &numcovpts, &covpts)); 90539566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, covpts[0], faceGeomArr, &fg)); 90549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreMeet(dm, 2, cellarr, &numcovpts, &covpts)); 90556ed19f2fSJacob Faibussowitsch } 9056f108dbd7SJacob Faibussowitsch 9057f108dbd7SJacob Faibussowitsch /* Compute c_i, f_i and their norms */ 9058f108dbd7SJacob Faibussowitsch for (i = 0; i < nc; i++) { 9059f108dbd7SJacob Faibussowitsch ci[i] = cgneigh->centroid[i] - cg->centroid[i]; 9060f108dbd7SJacob Faibussowitsch fi[i] = fg->centroid[i] - cg->centroid[i]; 9061f108dbd7SJacob Faibussowitsch Ai[i] = fg->normal[i]; 9062addd1e01SJunchao Zhang normci += PetscPowReal(ci[i], 2); 9063addd1e01SJunchao Zhang normfi += PetscPowReal(fi[i], 2); 9064addd1e01SJunchao Zhang normai += PetscPowReal(Ai[i], 2); 9065f108dbd7SJacob Faibussowitsch } 9066addd1e01SJunchao Zhang normci = PetscSqrtReal(normci); 9067addd1e01SJunchao Zhang normfi = PetscSqrtReal(normfi); 9068addd1e01SJunchao Zhang normai = PetscSqrtReal(normai); 9069f108dbd7SJacob Faibussowitsch 9070f108dbd7SJacob Faibussowitsch /* Normalize and compute for each face-cell-normal pair */ 9071f108dbd7SJacob Faibussowitsch for (i = 0; i < nc; i++) { 9072f108dbd7SJacob Faibussowitsch ci[i] = ci[i]/normci; 9073f108dbd7SJacob Faibussowitsch fi[i] = fi[i]/normfi; 9074f108dbd7SJacob Faibussowitsch Ai[i] = Ai[i]/normai; 9075f108dbd7SJacob Faibussowitsch /* PetscAbs because I don't know if normals are guaranteed to point out */ 9076f108dbd7SJacob Faibussowitsch cArr[cellneighiter] += PetscAbs(Ai[i]*ci[i]); 9077f108dbd7SJacob Faibussowitsch fArr[cellneighiter] += PetscAbs(Ai[i]*fi[i]); 9078f108dbd7SJacob Faibussowitsch } 9079f108dbd7SJacob Faibussowitsch if (PetscRealPart(cArr[cellneighiter]) < minvalc) { 9080f108dbd7SJacob Faibussowitsch minvalc = PetscRealPart(cArr[cellneighiter]); 9081f108dbd7SJacob Faibussowitsch } 9082f108dbd7SJacob Faibussowitsch if (PetscRealPart(fArr[cellneighiter]) < minvalf) { 9083f108dbd7SJacob Faibussowitsch minvalf = PetscRealPart(fArr[cellneighiter]); 9084f108dbd7SJacob Faibussowitsch } 9085f108dbd7SJacob Faibussowitsch } 90869566063dSJacob Faibussowitsch PetscCall(PetscFree(adj)); 90879566063dSJacob Faibussowitsch PetscCall(PetscFree2(cArr, fArr)); 9088f108dbd7SJacob Faibussowitsch /* Defer to cell if they're equal */ 90896ed19f2fSJacob Faibussowitsch oqVals[cellIter] = PetscMin(minvalf, minvalc); 9090f108dbd7SJacob Faibussowitsch if (OrthQualLabel) { 90919566063dSJacob Faibussowitsch if (PetscRealPart(oqVals[cellIter]) <= atol) PetscCall(DMLabelSetValue(*OrthQualLabel, cell, DM_ADAPT_REFINE)); 9092f108dbd7SJacob Faibussowitsch } 9093f108dbd7SJacob Faibussowitsch } 90949566063dSJacob Faibussowitsch PetscCall(VecSetValuesLocal(*OrthQual, cEnd-cStart, idx, oqVals, INSERT_VALUES)); 90959566063dSJacob Faibussowitsch PetscCall(VecAssemblyBegin(*OrthQual)); 90969566063dSJacob Faibussowitsch PetscCall(VecAssemblyEnd(*OrthQual)); 90979566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellgeom, &cellGeomArr)); 90989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(facegeom, &faceGeomArr)); 90999566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(comm, NULL, NULL, "-dm_plex_orthogonal_quality_label_view", &vwr, NULL, NULL)); 9100f108dbd7SJacob Faibussowitsch if (OrthQualLabel) { 91019566063dSJacob Faibussowitsch if (vwr) PetscCall(DMLabelView(*OrthQualLabel, vwr)); 9102f108dbd7SJacob Faibussowitsch } 91039566063dSJacob Faibussowitsch PetscCall(PetscFree5(idx, oqVals, ci, fi, Ai)); 91049566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&vwr)); 91059566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(*OrthQual, NULL, "-dm_plex_orthogonal_quality_vec_view")); 9106f108dbd7SJacob Faibussowitsch PetscFunctionReturn(0); 9107f108dbd7SJacob Faibussowitsch } 9108f108dbd7SJacob Faibussowitsch 91091eb70e55SToby Isaac /* this is here insead of DMGetOutputDM because output DM still has constraints in the local indices that affect 91101eb70e55SToby Isaac * interpolator construction */ 91111eb70e55SToby Isaac static PetscErrorCode DMGetFullDM(DM dm, DM *odm) 91121eb70e55SToby Isaac { 91131eb70e55SToby Isaac PetscSection section, newSection, gsection; 91141eb70e55SToby Isaac PetscSF sf; 91151eb70e55SToby Isaac PetscBool hasConstraints, ghasConstraints; 91161eb70e55SToby Isaac 91171eb70e55SToby Isaac PetscFunctionBegin; 91181eb70e55SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 91191eb70e55SToby Isaac PetscValidPointer(odm,2); 91209566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 91219566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 91229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&hasConstraints, &ghasConstraints, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject) dm))); 91231eb70e55SToby Isaac if (!ghasConstraints) { 91249566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 91251eb70e55SToby Isaac *odm = dm; 91261eb70e55SToby Isaac PetscFunctionReturn(0); 91271eb70e55SToby Isaac } 91289566063dSJacob Faibussowitsch PetscCall(DMClone(dm, odm)); 91299566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, *odm)); 91309566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(*odm, &newSection)); 91319566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(*odm, &sf)); 91329566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(newSection, sf, PETSC_TRUE, PETSC_FALSE, &gsection)); 91339566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(*odm, gsection)); 91349566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 91351eb70e55SToby Isaac PetscFunctionReturn(0); 91361eb70e55SToby Isaac } 91371eb70e55SToby Isaac 91381eb70e55SToby Isaac static PetscErrorCode DMCreateAffineInterpolationCorrection_Plex(DM dmc, DM dmf, Vec *shift) 91391eb70e55SToby Isaac { 91401eb70e55SToby Isaac DM dmco, dmfo; 91411eb70e55SToby Isaac Mat interpo; 91421eb70e55SToby Isaac Vec rscale; 91431eb70e55SToby Isaac Vec cglobalo, clocal; 91441eb70e55SToby Isaac Vec fglobal, fglobalo, flocal; 91451eb70e55SToby Isaac PetscBool regular; 91461eb70e55SToby Isaac 91471eb70e55SToby Isaac PetscFunctionBegin; 91489566063dSJacob Faibussowitsch PetscCall(DMGetFullDM(dmc, &dmco)); 91499566063dSJacob Faibussowitsch PetscCall(DMGetFullDM(dmf, &dmfo)); 91509566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dmfo, dmco)); 91519566063dSJacob Faibussowitsch PetscCall(DMPlexGetRegularRefinement(dmf, ®ular)); 91529566063dSJacob Faibussowitsch PetscCall(DMPlexSetRegularRefinement(dmfo, regular)); 91539566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolation(dmco, dmfo, &interpo, &rscale)); 91549566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dmco, &cglobalo)); 91559566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dmc, &clocal)); 91569566063dSJacob Faibussowitsch PetscCall(VecSet(cglobalo, 0.)); 91579566063dSJacob Faibussowitsch PetscCall(VecSet(clocal, 0.)); 91589566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dmf, &fglobal)); 91599566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dmfo, &fglobalo)); 91609566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dmf, &flocal)); 91619566063dSJacob Faibussowitsch PetscCall(VecSet(fglobal, 0.)); 91629566063dSJacob Faibussowitsch PetscCall(VecSet(fglobalo, 0.)); 91639566063dSJacob Faibussowitsch PetscCall(VecSet(flocal, 0.)); 91649566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dmc, PETSC_TRUE, clocal, 0., NULL, NULL, NULL)); 91659566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dmco, clocal, INSERT_VALUES, cglobalo)); 91669566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dmco, clocal, INSERT_VALUES, cglobalo)); 91679566063dSJacob Faibussowitsch PetscCall(MatMult(interpo, cglobalo, fglobalo)); 91689566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmfo, fglobalo, INSERT_VALUES, flocal)); 91699566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmfo, fglobalo, INSERT_VALUES, flocal)); 91709566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dmf, flocal, INSERT_VALUES, fglobal)); 91719566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dmf, flocal, INSERT_VALUES, fglobal)); 91721eb70e55SToby Isaac *shift = fglobal; 91739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&flocal)); 91749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fglobalo)); 91759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&clocal)); 91769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cglobalo)); 91779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&rscale)); 91789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&interpo)); 91799566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmfo)); 91809566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmco)); 91811eb70e55SToby Isaac PetscFunctionReturn(0); 91821eb70e55SToby Isaac } 91831eb70e55SToby Isaac 91841eb70e55SToby Isaac PETSC_INTERN PetscErrorCode DMInterpolateSolution_Plex(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 91851eb70e55SToby Isaac { 91861eb70e55SToby Isaac PetscObject shifto; 91871eb70e55SToby Isaac Vec shift; 91881eb70e55SToby Isaac 91891eb70e55SToby Isaac PetscFunctionBegin; 91901eb70e55SToby Isaac if (!interp) { 91911eb70e55SToby Isaac Vec rscale; 91921eb70e55SToby Isaac 91939566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolation(coarse, fine, &interp, &rscale)); 91949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&rscale)); 91951eb70e55SToby Isaac } else { 91969566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)interp)); 91971eb70e55SToby Isaac } 91989566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)interp, "_DMInterpolateSolution_Plex_Vec", &shifto)); 91991eb70e55SToby Isaac if (!shifto) { 92009566063dSJacob Faibussowitsch PetscCall(DMCreateAffineInterpolationCorrection_Plex(coarse, fine, &shift)); 92019566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)interp, "_DMInterpolateSolution_Plex_Vec", (PetscObject) shift)); 92021eb70e55SToby Isaac shifto = (PetscObject) shift; 92039566063dSJacob Faibussowitsch PetscCall(VecDestroy(&shift)); 92041eb70e55SToby Isaac } 92051eb70e55SToby Isaac shift = (Vec) shifto; 92069566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 92079566063dSJacob Faibussowitsch PetscCall(VecAXPY(fineSol, 1.0, shift)); 92089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&interp)); 92091eb70e55SToby Isaac PetscFunctionReturn(0); 92101eb70e55SToby Isaac } 92111eb70e55SToby Isaac 9212bceba477SMatthew G. Knepley /* Pointwise interpolation 9213bceba477SMatthew G. Knepley Just code FEM for now 9214bceba477SMatthew G. Knepley u^f = I u^c 92154ca5e9f5SMatthew G. Knepley sum_k u^f_k phi^f_k = I sum_j u^c_j phi^c_j 92164ca5e9f5SMatthew G. Knepley u^f_i = sum_j psi^f_i I phi^c_j u^c_j 92174ca5e9f5SMatthew G. Knepley I_{ij} = psi^f_i phi^c_j 9218bceba477SMatthew G. Knepley */ 9219bceba477SMatthew G. Knepley PetscErrorCode DMCreateInterpolation_Plex(DM dmCoarse, DM dmFine, Mat *interpolation, Vec *scaling) 9220bceba477SMatthew G. Knepley { 9221bceba477SMatthew G. Knepley PetscSection gsc, gsf; 9222bceba477SMatthew G. Knepley PetscInt m, n; 9223a063dac3SMatthew G. Knepley void *ctx; 922468132eb9SMatthew G. Knepley DM cdm; 9225cf51de39SMatthew G. Knepley PetscBool regular, ismatis, isRefined = dmCoarse->data == dmFine->data ? PETSC_FALSE : PETSC_TRUE; 9226bceba477SMatthew G. Knepley 9227bceba477SMatthew G. Knepley PetscFunctionBegin; 92289566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 92299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &m)); 92309566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 92319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &n)); 923268132eb9SMatthew G. Knepley 92339566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(dmCoarse->mattype, MATIS, &ismatis)); 92349566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject) dmCoarse), interpolation)); 92359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*interpolation, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 92369566063dSJacob Faibussowitsch PetscCall(MatSetType(*interpolation, ismatis ? MATAIJ : dmCoarse->mattype)); 92379566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dmFine, &ctx)); 923868132eb9SMatthew G. Knepley 92399566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 92409566063dSJacob Faibussowitsch PetscCall(DMPlexGetRegularRefinement(dmFine, ®ular)); 92419566063dSJacob Faibussowitsch if (!isRefined || (regular && cdm == dmCoarse)) PetscCall(DMPlexComputeInterpolatorNested(dmCoarse, dmFine, isRefined, *interpolation, ctx)); 92429566063dSJacob Faibussowitsch else PetscCall(DMPlexComputeInterpolatorGeneral(dmCoarse, dmFine, *interpolation, ctx)); 92439566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*interpolation, NULL, "-interp_mat_view")); 92444db47ee9SStefano Zampini if (scaling) { 92455d1c2e58SMatthew G. Knepley /* Use naive scaling */ 92469566063dSJacob Faibussowitsch PetscCall(DMCreateInterpolationScale(dmCoarse, dmFine, *interpolation, scaling)); 92474db47ee9SStefano Zampini } 9248a063dac3SMatthew G. Knepley PetscFunctionReturn(0); 9249a063dac3SMatthew G. Knepley } 9250bceba477SMatthew G. Knepley 92516dbf9973SLawrence Mitchell PetscErrorCode DMCreateInjection_Plex(DM dmCoarse, DM dmFine, Mat *mat) 9252a063dac3SMatthew G. Knepley { 92536dbf9973SLawrence Mitchell VecScatter ctx; 925490748bafSMatthew G. Knepley 9255a063dac3SMatthew G. Knepley PetscFunctionBegin; 92569566063dSJacob Faibussowitsch PetscCall(DMPlexComputeInjectorFEM(dmCoarse, dmFine, &ctx, NULL)); 92579566063dSJacob Faibussowitsch PetscCall(MatCreateScatter(PetscObjectComm((PetscObject)ctx), ctx, mat)); 92589566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&ctx)); 9259bceba477SMatthew G. Knepley PetscFunctionReturn(0); 9260bceba477SMatthew G. Knepley } 9261bceba477SMatthew G. Knepley 92623e9753d6SMatthew G. Knepley static void g0_identity_private(PetscInt dim, PetscInt Nf, PetscInt NfAux, 92633e9753d6SMatthew G. Knepley const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 92643e9753d6SMatthew G. Knepley const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 92653e9753d6SMatthew G. Knepley PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g0[]) 92663e9753d6SMatthew G. Knepley { 926700635df3SMatthew G. Knepley const PetscInt Nc = uOff[1] - uOff[0]; 926800635df3SMatthew G. Knepley PetscInt c; 926900635df3SMatthew G. Knepley for (c = 0; c < Nc; ++c) g0[c*Nc+c] = 1.0; 92703e9753d6SMatthew G. Knepley } 92713e9753d6SMatthew G. Knepley 9272b4937a87SMatthew G. Knepley PetscErrorCode DMCreateMassMatrixLumped_Plex(DM dm, Vec *mass) 9273b4937a87SMatthew G. Knepley { 9274b4937a87SMatthew G. Knepley DM dmc; 9275b4937a87SMatthew G. Knepley PetscDS ds; 9276b4937a87SMatthew G. Knepley Vec ones, locmass; 9277b4937a87SMatthew G. Knepley IS cellIS; 9278b4937a87SMatthew G. Knepley PetscFormKey key; 9279b4937a87SMatthew G. Knepley PetscInt depth; 9280b4937a87SMatthew G. Knepley 9281b4937a87SMatthew G. Knepley PetscFunctionBegin; 92829566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dmc)); 92839566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dmc)); 92849566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &ds)); 92859566063dSJacob Faibussowitsch PetscCall(PetscDSSetJacobian(ds, 0, 0, g0_identity_private, NULL, NULL, NULL)); 92869566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dmc, mass)); 92879566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmc, &ones)); 92889566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmc, &locmass)); 92899566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dmc, &depth)); 92909566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(dmc, "depth", depth, &cellIS)); 92919566063dSJacob Faibussowitsch PetscCall(VecSet(locmass, 0.0)); 92929566063dSJacob Faibussowitsch PetscCall(VecSet(ones, 1.0)); 9293b4937a87SMatthew G. Knepley key.label = NULL; 9294b4937a87SMatthew G. Knepley key.value = 0; 9295b4937a87SMatthew G. Knepley key.field = 0; 9296b4937a87SMatthew G. Knepley key.part = 0; 92979566063dSJacob Faibussowitsch PetscCall(DMPlexComputeJacobian_Action_Internal(dmc, key, cellIS, 0.0, 0.0, ones, NULL, ones, locmass, NULL)); 92989566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 92999566063dSJacob Faibussowitsch PetscCall(VecSet(*mass, 0.0)); 93009566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dmc, locmass, ADD_VALUES, *mass)); 93019566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dmc, locmass, ADD_VALUES, *mass)); 93029566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmc, &ones)); 93039566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmc, &locmass)); 93049566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmc)); 9305b4937a87SMatthew G. Knepley PetscFunctionReturn(0); 9306b4937a87SMatthew G. Knepley } 9307b4937a87SMatthew G. Knepley 9308bd041c0cSMatthew G. Knepley PetscErrorCode DMCreateMassMatrix_Plex(DM dmCoarse, DM dmFine, Mat *mass) 9309bd041c0cSMatthew G. Knepley { 9310bd041c0cSMatthew G. Knepley PetscSection gsc, gsf; 9311bd041c0cSMatthew G. Knepley PetscInt m, n; 9312bd041c0cSMatthew G. Knepley void *ctx; 9313bd041c0cSMatthew G. Knepley DM cdm; 9314bd041c0cSMatthew G. Knepley PetscBool regular; 9315bd041c0cSMatthew G. Knepley 9316bd041c0cSMatthew G. Knepley PetscFunctionBegin; 93173e9753d6SMatthew G. Knepley if (dmFine == dmCoarse) { 93183e9753d6SMatthew G. Knepley DM dmc; 93193e9753d6SMatthew G. Knepley PetscDS ds; 9320b4937a87SMatthew G. Knepley PetscWeakForm wf; 93213e9753d6SMatthew G. Knepley Vec u; 93223e9753d6SMatthew G. Knepley IS cellIS; 932306ad1575SMatthew G. Knepley PetscFormKey key; 93243e9753d6SMatthew G. Knepley PetscInt depth; 93253e9753d6SMatthew G. Knepley 93269566063dSJacob Faibussowitsch PetscCall(DMClone(dmFine, &dmc)); 93279566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dmFine, dmc)); 93289566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &ds)); 93299566063dSJacob Faibussowitsch PetscCall(PetscDSGetWeakForm(ds, &wf)); 93309566063dSJacob Faibussowitsch PetscCall(PetscWeakFormClear(wf)); 93319566063dSJacob Faibussowitsch PetscCall(PetscDSSetJacobian(ds, 0, 0, g0_identity_private, NULL, NULL, NULL)); 93329566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(dmc, mass)); 93339566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmc, &u)); 93349566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dmc, &depth)); 93359566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(dmc, "depth", depth, &cellIS)); 93369566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*mass)); 93376528b96dSMatthew G. Knepley key.label = NULL; 93386528b96dSMatthew G. Knepley key.value = 0; 93396528b96dSMatthew G. Knepley key.field = 0; 934006ad1575SMatthew G. Knepley key.part = 0; 93419566063dSJacob Faibussowitsch PetscCall(DMPlexComputeJacobian_Internal(dmc, key, cellIS, 0.0, 0.0, u, NULL, *mass, *mass, NULL)); 93429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 93439566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmc, &u)); 93449566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmc)); 93453e9753d6SMatthew G. Knepley } else { 93469566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmFine, &gsf)); 93479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsf, &m)); 93489566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmCoarse, &gsc)); 93499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(gsc, &n)); 9350bd041c0cSMatthew G. Knepley 93519566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject) dmCoarse), mass)); 93529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mass, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 93539566063dSJacob Faibussowitsch PetscCall(MatSetType(*mass, dmCoarse->mattype)); 93549566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dmFine, &ctx)); 9355bd041c0cSMatthew G. Knepley 93569566063dSJacob Faibussowitsch PetscCall(DMGetCoarseDM(dmFine, &cdm)); 93579566063dSJacob Faibussowitsch PetscCall(DMPlexGetRegularRefinement(dmFine, ®ular)); 93589566063dSJacob Faibussowitsch if (regular && cdm == dmCoarse) PetscCall(DMPlexComputeMassMatrixNested(dmCoarse, dmFine, *mass, ctx)); 93599566063dSJacob Faibussowitsch else PetscCall(DMPlexComputeMassMatrixGeneral(dmCoarse, dmFine, *mass, ctx)); 93603e9753d6SMatthew G. Knepley } 93619566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(*mass, NULL, "-mass_mat_view")); 9362bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 9363bd041c0cSMatthew G. Knepley } 9364bd041c0cSMatthew G. Knepley 93650aef6b92SMatthew G. Knepley /*@ 93660aef6b92SMatthew G. Knepley DMPlexGetRegularRefinement - Get the flag indicating that this mesh was obtained by regular refinement from its coarse mesh 93670aef6b92SMatthew G. Knepley 93680aef6b92SMatthew G. Knepley Input Parameter: 93690aef6b92SMatthew G. Knepley . dm - The DMPlex object 93700aef6b92SMatthew G. Knepley 93710aef6b92SMatthew G. Knepley Output Parameter: 93720aef6b92SMatthew G. Knepley . regular - The flag 93730aef6b92SMatthew G. Knepley 93740aef6b92SMatthew G. Knepley Level: intermediate 93750aef6b92SMatthew G. Knepley 9376db781477SPatrick Sanan .seealso: `DMPlexSetRegularRefinement()` 93770aef6b92SMatthew G. Knepley @*/ 93780aef6b92SMatthew G. Knepley PetscErrorCode DMPlexGetRegularRefinement(DM dm, PetscBool *regular) 93790aef6b92SMatthew G. Knepley { 93800aef6b92SMatthew G. Knepley PetscFunctionBegin; 93810aef6b92SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9382dadcf809SJacob Faibussowitsch PetscValidBoolPointer(regular, 2); 93830aef6b92SMatthew G. Knepley *regular = ((DM_Plex *) dm->data)->regularRefinement; 93840aef6b92SMatthew G. Knepley PetscFunctionReturn(0); 93850aef6b92SMatthew G. Knepley } 93860aef6b92SMatthew G. Knepley 93870aef6b92SMatthew G. Knepley /*@ 93880aef6b92SMatthew G. Knepley DMPlexSetRegularRefinement - Set the flag indicating that this mesh was obtained by regular refinement from its coarse mesh 93890aef6b92SMatthew G. Knepley 93900aef6b92SMatthew G. Knepley Input Parameters: 93910aef6b92SMatthew G. Knepley + dm - The DMPlex object 93920aef6b92SMatthew G. Knepley - regular - The flag 93930aef6b92SMatthew G. Knepley 93940aef6b92SMatthew G. Knepley Level: intermediate 93950aef6b92SMatthew G. Knepley 9396db781477SPatrick Sanan .seealso: `DMPlexGetRegularRefinement()` 93970aef6b92SMatthew G. Knepley @*/ 93980aef6b92SMatthew G. Knepley PetscErrorCode DMPlexSetRegularRefinement(DM dm, PetscBool regular) 93990aef6b92SMatthew G. Knepley { 94000aef6b92SMatthew G. Knepley PetscFunctionBegin; 94010aef6b92SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 94020aef6b92SMatthew G. Knepley ((DM_Plex *) dm->data)->regularRefinement = regular; 94030aef6b92SMatthew G. Knepley PetscFunctionReturn(0); 94040aef6b92SMatthew G. Knepley } 94050aef6b92SMatthew G. Knepley 9406f7c74593SToby Isaac /* anchors */ 9407a68b90caSToby Isaac /*@ 9408f7c74593SToby Isaac DMPlexGetAnchors - Get the layout of the anchor (point-to-point) constraints. Typically, the user will not have to 9409ebdb1bfaSJed Brown call DMPlexGetAnchors() directly: if there are anchors, then DMPlexGetAnchors() is called during DMGetDefaultConstraints(). 9410a68b90caSToby Isaac 9411e228b242SToby Isaac not collective 9412a68b90caSToby Isaac 9413f899ff85SJose E. Roman Input Parameter: 9414a68b90caSToby Isaac . dm - The DMPlex object 9415a68b90caSToby Isaac 9416a68b90caSToby Isaac Output Parameters: 9417a68b90caSToby Isaac + anchorSection - If not NULL, set to the section describing which points anchor the constrained points. 9418a68b90caSToby Isaac - anchorIS - If not NULL, set to the list of anchors indexed by anchorSection 9419a68b90caSToby Isaac 9420a68b90caSToby Isaac Level: intermediate 9421a68b90caSToby Isaac 9422db781477SPatrick Sanan .seealso: `DMPlexSetAnchors()`, `DMGetDefaultConstraints()`, `DMSetDefaultConstraints()` 9423a68b90caSToby Isaac @*/ 9424a17985deSToby Isaac PetscErrorCode DMPlexGetAnchors(DM dm, PetscSection *anchorSection, IS *anchorIS) 9425a68b90caSToby Isaac { 9426a68b90caSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 9427a68b90caSToby Isaac 9428a68b90caSToby Isaac PetscFunctionBegin; 9429a68b90caSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 94309566063dSJacob Faibussowitsch if (!plex->anchorSection && !plex->anchorIS && plex->createanchors) PetscCall((*plex->createanchors)(dm)); 9431a68b90caSToby Isaac if (anchorSection) *anchorSection = plex->anchorSection; 9432a68b90caSToby Isaac if (anchorIS) *anchorIS = plex->anchorIS; 9433a68b90caSToby Isaac PetscFunctionReturn(0); 9434a68b90caSToby Isaac } 9435a68b90caSToby Isaac 9436a68b90caSToby Isaac /*@ 9437f7c74593SToby Isaac DMPlexSetAnchors - Set the layout of the local anchor (point-to-point) constraints. Unlike boundary conditions, 9438f7c74593SToby Isaac when a point's degrees of freedom in a section are constrained to an outside value, the anchor constraints set a 9439a68b90caSToby Isaac point's degrees of freedom to be a linear combination of other points' degrees of freedom. 9440a68b90caSToby Isaac 9441a17985deSToby Isaac After specifying the layout of constraints with DMPlexSetAnchors(), one specifies the constraints by calling 9442ebdb1bfaSJed Brown DMGetDefaultConstraints() and filling in the entries in the constraint matrix. 9443a68b90caSToby Isaac 9444e228b242SToby Isaac collective on dm 9445a68b90caSToby Isaac 9446a68b90caSToby Isaac Input Parameters: 9447a68b90caSToby Isaac + dm - The DMPlex object 9448e228b242SToby Isaac . anchorSection - The section that describes the mapping from constrained points to the anchor points listed in anchorIS. Must have a local communicator (PETSC_COMM_SELF or derivative). 9449e228b242SToby Isaac - anchorIS - The list of all anchor points. Must have a local communicator (PETSC_COMM_SELF or derivative). 9450a68b90caSToby Isaac 9451a68b90caSToby Isaac The reference counts of anchorSection and anchorIS are incremented. 9452a68b90caSToby Isaac 9453a68b90caSToby Isaac Level: intermediate 9454a68b90caSToby Isaac 9455db781477SPatrick Sanan .seealso: `DMPlexGetAnchors()`, `DMGetDefaultConstraints()`, `DMSetDefaultConstraints()` 9456a68b90caSToby Isaac @*/ 9457a17985deSToby Isaac PetscErrorCode DMPlexSetAnchors(DM dm, PetscSection anchorSection, IS anchorIS) 9458a68b90caSToby Isaac { 9459a68b90caSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 9460e228b242SToby Isaac PetscMPIInt result; 9461a68b90caSToby Isaac 9462a68b90caSToby Isaac PetscFunctionBegin; 9463a68b90caSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9464e228b242SToby Isaac if (anchorSection) { 9465e228b242SToby Isaac PetscValidHeaderSpecific(anchorSection,PETSC_SECTION_CLASSID,2); 94669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF,PetscObjectComm((PetscObject)anchorSection),&result)); 94671dca8a05SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"anchor section must have local communicator"); 9468e228b242SToby Isaac } 9469e228b242SToby Isaac if (anchorIS) { 9470e228b242SToby Isaac PetscValidHeaderSpecific(anchorIS,IS_CLASSID,3); 94719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF,PetscObjectComm((PetscObject)anchorIS),&result)); 94721dca8a05SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"anchor IS must have local communicator"); 9473e228b242SToby Isaac } 9474a68b90caSToby Isaac 94759566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)anchorSection)); 94769566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&plex->anchorSection)); 9477a68b90caSToby Isaac plex->anchorSection = anchorSection; 9478a68b90caSToby Isaac 94799566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)anchorIS)); 94809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&plex->anchorIS)); 9481a68b90caSToby Isaac plex->anchorIS = anchorIS; 9482a68b90caSToby Isaac 9483cf9c20a2SJed Brown if (PetscUnlikelyDebug(anchorIS && anchorSection)) { 9484a68b90caSToby Isaac PetscInt size, a, pStart, pEnd; 9485a68b90caSToby Isaac const PetscInt *anchors; 9486a68b90caSToby Isaac 94879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(anchorSection,&pStart,&pEnd)); 94889566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(anchorIS,&size)); 94899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(anchorIS,&anchors)); 9490a68b90caSToby Isaac for (a = 0; a < size; a++) { 9491a68b90caSToby Isaac PetscInt p; 9492a68b90caSToby Isaac 9493a68b90caSToby Isaac p = anchors[a]; 9494a68b90caSToby Isaac if (p >= pStart && p < pEnd) { 9495a68b90caSToby Isaac PetscInt dof; 9496a68b90caSToby Isaac 94979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(anchorSection,p,&dof)); 9498a68b90caSToby Isaac if (dof) { 9499a68b90caSToby Isaac 95009566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(anchorIS,&anchors)); 950163a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Point %" PetscInt_FMT " cannot be constrained and an anchor",p); 9502a68b90caSToby Isaac } 9503a68b90caSToby Isaac } 9504a68b90caSToby Isaac } 95059566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(anchorIS,&anchors)); 9506a68b90caSToby Isaac } 9507f7c74593SToby Isaac /* reset the generic constraints */ 95089566063dSJacob Faibussowitsch PetscCall(DMSetDefaultConstraints(dm,NULL,NULL,NULL)); 9509a68b90caSToby Isaac PetscFunctionReturn(0); 9510a68b90caSToby Isaac } 9511a68b90caSToby Isaac 9512f7c74593SToby Isaac static PetscErrorCode DMPlexCreateConstraintSection_Anchors(DM dm, PetscSection section, PetscSection *cSec) 9513a68b90caSToby Isaac { 9514f7c74593SToby Isaac PetscSection anchorSection; 95156995de1eSToby Isaac PetscInt pStart, pEnd, sStart, sEnd, p, dof, numFields, f; 9516a68b90caSToby Isaac 9517a68b90caSToby Isaac PetscFunctionBegin; 9518a68b90caSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 95199566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&anchorSection,NULL)); 95209566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF,cSec)); 95219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section,&numFields)); 95226995de1eSToby Isaac if (numFields) { 9523719ab38cSToby Isaac PetscInt f; 95249566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(*cSec,numFields)); 9525719ab38cSToby Isaac 9526719ab38cSToby Isaac for (f = 0; f < numFields; f++) { 9527719ab38cSToby Isaac PetscInt numComp; 9528719ab38cSToby Isaac 95299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section,f,&numComp)); 95309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(*cSec,f,numComp)); 9531719ab38cSToby Isaac } 95326995de1eSToby Isaac } 95339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(anchorSection,&pStart,&pEnd)); 95349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section,&sStart,&sEnd)); 95356995de1eSToby Isaac pStart = PetscMax(pStart,sStart); 95366995de1eSToby Isaac pEnd = PetscMin(pEnd,sEnd); 95376995de1eSToby Isaac pEnd = PetscMax(pStart,pEnd); 95389566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(*cSec,pStart,pEnd)); 9539a68b90caSToby Isaac for (p = pStart; p < pEnd; p++) { 95409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(anchorSection,p,&dof)); 9541a68b90caSToby Isaac if (dof) { 95429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,p,&dof)); 95439566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(*cSec,p,dof)); 9544a68b90caSToby Isaac for (f = 0; f < numFields; f++) { 95459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,p,f,&dof)); 95469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(*cSec,p,f,dof)); 9547a68b90caSToby Isaac } 9548a68b90caSToby Isaac } 9549a68b90caSToby Isaac } 95509566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(*cSec)); 95519566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *cSec, "Constraint Section")); 9552a68b90caSToby Isaac PetscFunctionReturn(0); 9553a68b90caSToby Isaac } 9554a68b90caSToby Isaac 9555f7c74593SToby Isaac static PetscErrorCode DMPlexCreateConstraintMatrix_Anchors(DM dm, PetscSection section, PetscSection cSec, Mat *cMat) 9556a68b90caSToby Isaac { 9557f7c74593SToby Isaac PetscSection aSec; 9558ae65431dSMatthew G. Knepley PetscInt pStart, pEnd, p, sStart, sEnd, dof, aDof, aOff, off, nnz, annz, m, n, q, a, offset, *i, *j; 95590ac89760SToby Isaac const PetscInt *anchors; 95600ac89760SToby Isaac PetscInt numFields, f; 956166ad2231SToby Isaac IS aIS; 9562e19f7ee6SMark Adams MatType mtype; 9563e19f7ee6SMark Adams PetscBool iscuda,iskokkos; 95640ac89760SToby Isaac 95650ac89760SToby Isaac PetscFunctionBegin; 95660ac89760SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 95679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(cSec, &m)); 95689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 95699566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,cMat)); 95709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*cMat,m,n,m,n)); 95719566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(dm->mattype,MATSEQAIJCUSPARSE,&iscuda)); 95729566063dSJacob Faibussowitsch if (!iscuda) PetscCall(PetscStrcmp(dm->mattype,MATMPIAIJCUSPARSE,&iscuda)); 95739566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(dm->mattype,MATSEQAIJKOKKOS,&iskokkos)); 95749566063dSJacob Faibussowitsch if (!iskokkos) PetscCall(PetscStrcmp(dm->mattype,MATMPIAIJKOKKOS,&iskokkos)); 9575e19f7ee6SMark Adams if (iscuda) mtype = MATSEQAIJCUSPARSE; 9576e19f7ee6SMark Adams else if (iskokkos) mtype = MATSEQAIJKOKKOS; 9577e19f7ee6SMark Adams else mtype = MATSEQAIJ; 95789566063dSJacob Faibussowitsch PetscCall(MatSetType(*cMat,mtype)); 95799566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS)); 95809566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS,&anchors)); 95816995de1eSToby Isaac /* cSec will be a subset of aSec and section */ 95829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec,&pStart,&pEnd)); 95839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section,&sStart,&sEnd)); 95849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m+1,&i)); 95850ac89760SToby Isaac i[0] = 0; 95869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section,&numFields)); 95870ac89760SToby Isaac for (p = pStart; p < pEnd; p++) { 9588f19733c5SToby Isaac PetscInt rDof, rOff, r; 9589f19733c5SToby Isaac 95909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&rDof)); 9591f19733c5SToby Isaac if (!rDof) continue; 95929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&rOff)); 95930ac89760SToby Isaac if (numFields) { 95940ac89760SToby Isaac for (f = 0; f < numFields; f++) { 95950ac89760SToby Isaac annz = 0; 9596f19733c5SToby Isaac for (r = 0; r < rDof; r++) { 9597f19733c5SToby Isaac a = anchors[rOff + r]; 9598ae65431dSMatthew G. Knepley if (a < sStart || a >= sEnd) continue; 95999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,a,f,&aDof)); 96000ac89760SToby Isaac annz += aDof; 96010ac89760SToby Isaac } 96029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(cSec,p,f,&dof)); 96039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(cSec,p,f,&off)); 96040ac89760SToby Isaac for (q = 0; q < dof; q++) { 96050ac89760SToby Isaac i[off + q + 1] = i[off + q] + annz; 96060ac89760SToby Isaac } 96070ac89760SToby Isaac } 96082f7452b8SBarry Smith } else { 96090ac89760SToby Isaac annz = 0; 96109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec,p,&dof)); 96110ac89760SToby Isaac for (q = 0; q < dof; q++) { 9612ae65431dSMatthew G. Knepley a = anchors[rOff + q]; 9613ae65431dSMatthew G. Knepley if (a < sStart || a >= sEnd) continue; 96149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,a,&aDof)); 96150ac89760SToby Isaac annz += aDof; 96160ac89760SToby Isaac } 96179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec,p,&dof)); 96189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cSec,p,&off)); 96190ac89760SToby Isaac for (q = 0; q < dof; q++) { 96200ac89760SToby Isaac i[off + q + 1] = i[off + q] + annz; 96210ac89760SToby Isaac } 96220ac89760SToby Isaac } 96230ac89760SToby Isaac } 96240ac89760SToby Isaac nnz = i[m]; 96259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nnz,&j)); 96260ac89760SToby Isaac offset = 0; 96270ac89760SToby Isaac for (p = pStart; p < pEnd; p++) { 96280ac89760SToby Isaac if (numFields) { 96290ac89760SToby Isaac for (f = 0; f < numFields; f++) { 96309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(cSec,p,f,&dof)); 96310ac89760SToby Isaac for (q = 0; q < dof; q++) { 96320ac89760SToby Isaac PetscInt rDof, rOff, r; 96339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&rDof)); 96349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&rOff)); 96350ac89760SToby Isaac for (r = 0; r < rDof; r++) { 96360ac89760SToby Isaac PetscInt s; 96370ac89760SToby Isaac 96380ac89760SToby Isaac a = anchors[rOff + r]; 9639ae65431dSMatthew G. Knepley if (a < sStart || a >= sEnd) continue; 96409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section,a,f,&aDof)); 96419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(section,a,f,&aOff)); 96420ac89760SToby Isaac for (s = 0; s < aDof; s++) { 96430ac89760SToby Isaac j[offset++] = aOff + s; 96440ac89760SToby Isaac } 96450ac89760SToby Isaac } 96460ac89760SToby Isaac } 96470ac89760SToby Isaac } 96482f7452b8SBarry Smith } else { 96499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec,p,&dof)); 96500ac89760SToby Isaac for (q = 0; q < dof; q++) { 96510ac89760SToby Isaac PetscInt rDof, rOff, r; 96529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&rDof)); 96539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&rOff)); 96540ac89760SToby Isaac for (r = 0; r < rDof; r++) { 96550ac89760SToby Isaac PetscInt s; 96560ac89760SToby Isaac 96570ac89760SToby Isaac a = anchors[rOff + r]; 9658ae65431dSMatthew G. Knepley if (a < sStart || a >= sEnd) continue; 96599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section,a,&aDof)); 96609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section,a,&aOff)); 96610ac89760SToby Isaac for (s = 0; s < aDof; s++) { 96620ac89760SToby Isaac j[offset++] = aOff + s; 96630ac89760SToby Isaac } 96640ac89760SToby Isaac } 96650ac89760SToby Isaac } 96660ac89760SToby Isaac } 96670ac89760SToby Isaac } 96689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocationCSR(*cMat,i,j,NULL)); 96699566063dSJacob Faibussowitsch PetscCall(PetscFree(i)); 96709566063dSJacob Faibussowitsch PetscCall(PetscFree(j)); 96719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS,&anchors)); 96720ac89760SToby Isaac PetscFunctionReturn(0); 96730ac89760SToby Isaac } 96740ac89760SToby Isaac 967566ad2231SToby Isaac PetscErrorCode DMCreateDefaultConstraints_Plex(DM dm) 967666ad2231SToby Isaac { 9677f7c74593SToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 9678f7c74593SToby Isaac PetscSection anchorSection, section, cSec; 967966ad2231SToby Isaac Mat cMat; 968066ad2231SToby Isaac 968166ad2231SToby Isaac PetscFunctionBegin; 968266ad2231SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 96839566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&anchorSection,NULL)); 968466ad2231SToby Isaac if (anchorSection) { 968544a7f3ddSMatthew G. Knepley PetscInt Nf; 9686e228b242SToby Isaac 96879566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm,§ion)); 96889566063dSJacob Faibussowitsch PetscCall(DMPlexCreateConstraintSection_Anchors(dm,section,&cSec)); 96899566063dSJacob Faibussowitsch PetscCall(DMPlexCreateConstraintMatrix_Anchors(dm,section,cSec,&cMat)); 96909566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm,&Nf)); 96919566063dSJacob Faibussowitsch if (Nf && plex->computeanchormatrix) PetscCall((*plex->computeanchormatrix)(dm,section,cSec,cMat)); 96929566063dSJacob Faibussowitsch PetscCall(DMSetDefaultConstraints(dm,cSec,cMat,NULL)); 96939566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&cSec)); 96949566063dSJacob Faibussowitsch PetscCall(MatDestroy(&cMat)); 969566ad2231SToby Isaac } 969666ad2231SToby Isaac PetscFunctionReturn(0); 969766ad2231SToby Isaac } 9698a93c429eSMatthew G. Knepley 9699a93c429eSMatthew G. Knepley PetscErrorCode DMCreateSubDomainDM_Plex(DM dm, DMLabel label, PetscInt value, IS *is, DM *subdm) 9700a93c429eSMatthew G. Knepley { 9701a93c429eSMatthew G. Knepley IS subis; 9702a93c429eSMatthew G. Knepley PetscSection section, subsection; 9703a93c429eSMatthew G. Knepley 9704a93c429eSMatthew G. Knepley PetscFunctionBegin; 97059566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 970628b400f6SJacob Faibussowitsch PetscCheck(section,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Must set default section for DM before splitting subdomain"); 970728b400f6SJacob Faibussowitsch PetscCheck(subdm,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Must set output subDM for splitting subdomain"); 9708a93c429eSMatthew G. Knepley /* Create subdomain */ 97099566063dSJacob Faibussowitsch PetscCall(DMPlexFilter(dm, label, value, subdm)); 9710a93c429eSMatthew G. Knepley /* Create submodel */ 97119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(*subdm, &subis)); 97129566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateSubmeshSection(section, subis, &subsection)); 97139566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(*subdm, subsection)); 97149566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&subsection)); 97159566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *subdm)); 9716a93c429eSMatthew G. Knepley /* Create map from submodel to global model */ 9717a93c429eSMatthew G. Knepley if (is) { 9718a93c429eSMatthew G. Knepley PetscSection sectionGlobal, subsectionGlobal; 9719a93c429eSMatthew G. Knepley IS spIS; 9720a93c429eSMatthew G. Knepley const PetscInt *spmap; 9721a93c429eSMatthew G. Knepley PetscInt *subIndices; 9722a93c429eSMatthew G. Knepley PetscInt subSize = 0, subOff = 0, pStart, pEnd, p; 9723a93c429eSMatthew G. Knepley PetscInt Nf, f, bs = -1, bsLocal[2], bsMinMax[2]; 9724a93c429eSMatthew G. Knepley 97259566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(*subdm, &spIS)); 97269566063dSJacob Faibussowitsch PetscCall(ISGetIndices(spIS, &spmap)); 97279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 97289566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 97299566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(*subdm, &subsectionGlobal)); 97309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(subsection, &pStart, &pEnd)); 9731a93c429eSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 9732a93c429eSMatthew G. Knepley PetscInt gdof, pSubSize = 0; 9733a93c429eSMatthew G. Knepley 97349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 9735a93c429eSMatthew G. Knepley if (gdof > 0) { 9736a93c429eSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 9737a93c429eSMatthew G. Knepley PetscInt fdof, fcdof; 9738a93c429eSMatthew G. Knepley 97399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(subsection, p, f, &fdof)); 97409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(subsection, p, f, &fcdof)); 9741a93c429eSMatthew G. Knepley pSubSize += fdof-fcdof; 9742a93c429eSMatthew G. Knepley } 9743a93c429eSMatthew G. Knepley subSize += pSubSize; 9744a93c429eSMatthew G. Knepley if (pSubSize) { 9745a93c429eSMatthew G. Knepley if (bs < 0) { 9746a93c429eSMatthew G. Knepley bs = pSubSize; 9747a93c429eSMatthew G. Knepley } else if (bs != pSubSize) { 9748a93c429eSMatthew G. Knepley /* Layout does not admit a pointwise block size */ 9749a93c429eSMatthew G. Knepley bs = 1; 9750a93c429eSMatthew G. Knepley } 9751a93c429eSMatthew G. Knepley } 9752a93c429eSMatthew G. Knepley } 9753a93c429eSMatthew G. Knepley } 9754a93c429eSMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 9755a93c429eSMatthew G. Knepley bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; bsLocal[1] = bs; 97569566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject) dm), bsLocal, bsMinMax)); 9757a93c429eSMatthew G. Knepley if (bsMinMax[0] != bsMinMax[1]) {bs = 1;} 9758a93c429eSMatthew G. Knepley else {bs = bsMinMax[0];} 97599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(subSize, &subIndices)); 9760a93c429eSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 9761a93c429eSMatthew G. Knepley PetscInt gdof, goff; 9762a93c429eSMatthew G. Knepley 97639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subsectionGlobal, p, &gdof)); 9764a93c429eSMatthew G. Knepley if (gdof > 0) { 9765a93c429eSMatthew G. Knepley const PetscInt point = spmap[p]; 9766a93c429eSMatthew G. Knepley 97679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, point, &goff)); 9768a93c429eSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 9769a93c429eSMatthew G. Knepley PetscInt fdof, fcdof, fc, f2, poff = 0; 9770a93c429eSMatthew G. Knepley 9771a93c429eSMatthew G. Knepley /* Can get rid of this loop by storing field information in the global section */ 9772a93c429eSMatthew G. Knepley for (f2 = 0; f2 < f; ++f2) { 97739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f2, &fdof)); 97749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f2, &fcdof)); 9775a93c429eSMatthew G. Knepley poff += fdof-fcdof; 9776a93c429eSMatthew G. Knepley } 97779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 97789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 9779a93c429eSMatthew G. Knepley for (fc = 0; fc < fdof-fcdof; ++fc, ++subOff) { 9780a93c429eSMatthew G. Knepley subIndices[subOff] = goff+poff+fc; 9781a93c429eSMatthew G. Knepley } 9782a93c429eSMatthew G. Knepley } 9783a93c429eSMatthew G. Knepley } 9784a93c429eSMatthew G. Knepley } 97859566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(spIS, &spmap)); 97869566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), subSize, subIndices, PETSC_OWN_POINTER, is)); 9787a93c429eSMatthew G. Knepley if (bs > 1) { 9788a93c429eSMatthew G. Knepley /* We need to check that the block size does not come from non-contiguous fields */ 9789a93c429eSMatthew G. Knepley PetscInt i, j, set = 1; 9790a93c429eSMatthew G. Knepley for (i = 0; i < subSize; i += bs) { 9791a93c429eSMatthew G. Knepley for (j = 0; j < bs; ++j) { 9792a93c429eSMatthew G. Knepley if (subIndices[i+j] != subIndices[i]+j) {set = 0; break;} 9793a93c429eSMatthew G. Knepley } 9794a93c429eSMatthew G. Knepley } 97959566063dSJacob Faibussowitsch if (set) PetscCall(ISSetBlockSize(*is, bs)); 9796a93c429eSMatthew G. Knepley } 9797a93c429eSMatthew G. Knepley /* Attach nullspace */ 9798a93c429eSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 9799a93c429eSMatthew G. Knepley (*subdm)->nullspaceConstructors[f] = dm->nullspaceConstructors[f]; 9800a93c429eSMatthew G. Knepley if ((*subdm)->nullspaceConstructors[f]) break; 9801a93c429eSMatthew G. Knepley } 9802a93c429eSMatthew G. Knepley if (f < Nf) { 9803a93c429eSMatthew G. Knepley MatNullSpace nullSpace; 98049566063dSJacob Faibussowitsch PetscCall((*(*subdm)->nullspaceConstructors[f])(*subdm, f, f, &nullSpace)); 98056823f3c5SBlaise Bourdin 98069566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) *is, "nullspace", (PetscObject) nullSpace)); 98079566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 9808a93c429eSMatthew G. Knepley } 9809a93c429eSMatthew G. Knepley } 9810a93c429eSMatthew G. Knepley PetscFunctionReturn(0); 9811a93c429eSMatthew G. Knepley } 9812c0f0dcc3SMatthew G. Knepley 9813c0f0dcc3SMatthew G. Knepley /*@ 9814c0f0dcc3SMatthew G. Knepley DMPlexMonitorThroughput - Report the cell throughput of FE integration 9815c0f0dcc3SMatthew G. Knepley 9816c0f0dcc3SMatthew G. Knepley Input Parameter: 9817c0f0dcc3SMatthew G. Knepley - dm - The DM 9818c0f0dcc3SMatthew G. Knepley 9819c0f0dcc3SMatthew G. Knepley Level: developer 9820c0f0dcc3SMatthew G. Knepley 9821c0f0dcc3SMatthew G. Knepley Options Database Keys: 9822c0f0dcc3SMatthew G. Knepley . -dm_plex_monitor_throughput - Activate the monitor 9823c0f0dcc3SMatthew G. Knepley 9824db781477SPatrick Sanan .seealso: `DMSetFromOptions()`, `DMPlexCreate()` 9825c0f0dcc3SMatthew G. Knepley @*/ 9826c0f0dcc3SMatthew G. Knepley PetscErrorCode DMPlexMonitorThroughput(DM dm, void *dummy) 9827c0f0dcc3SMatthew G. Knepley { 9828e5ed2c37SJose E. Roman #if defined(PETSC_USE_LOG) 9829c0f0dcc3SMatthew G. Knepley PetscStageLog stageLog; 9830c0f0dcc3SMatthew G. Knepley PetscLogEvent event; 9831c0f0dcc3SMatthew G. Knepley PetscLogStage stage; 9832c0f0dcc3SMatthew G. Knepley PetscEventPerfInfo eventInfo; 9833c0f0dcc3SMatthew G. Knepley PetscReal cellRate, flopRate; 9834c0f0dcc3SMatthew G. Knepley PetscInt cStart, cEnd, Nf, N; 9835c0f0dcc3SMatthew G. Knepley const char *name; 9836e5ed2c37SJose E. Roman #endif 9837c0f0dcc3SMatthew G. Knepley 9838c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 9839c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9840c0f0dcc3SMatthew G. Knepley #if defined(PETSC_USE_LOG) 98419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) dm, &name)); 98429566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 98439566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 98449566063dSJacob Faibussowitsch PetscCall(PetscLogGetStageLog(&stageLog)); 98459566063dSJacob Faibussowitsch PetscCall(PetscStageLogGetCurrent(stageLog, &stage)); 98469566063dSJacob Faibussowitsch PetscCall(PetscLogEventGetId("DMPlexResidualFE", &event)); 98479566063dSJacob Faibussowitsch PetscCall(PetscLogEventGetPerfInfo(stage, event, &eventInfo)); 9848c0f0dcc3SMatthew G. Knepley N = (cEnd - cStart)*Nf*eventInfo.count; 9849c0f0dcc3SMatthew G. Knepley flopRate = eventInfo.flops/eventInfo.time; 9850c0f0dcc3SMatthew G. Knepley cellRate = N/eventInfo.time; 985163a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject) dm), "DM (%s) FE Residual Integration: %" PetscInt_FMT " integrals %d reps\n Cell rate: %.2g/s flop rate: %.2g MF/s\n", name ? name : "unknown", N, eventInfo.count, (double) cellRate, (double) (flopRate/1.e6))); 9852c0f0dcc3SMatthew G. Knepley #else 9853c0f0dcc3SMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Plex Throughput Monitor is not supported if logging is turned off. Reconfigure using --with-log."); 9854c0f0dcc3SMatthew G. Knepley #endif 9855c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 9856c0f0dcc3SMatthew G. Knepley } 9857