1f918ec44SMatthew G. Knepley #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2f918ec44SMatthew G. Knepley 3a2c9b50fSJeremy L Thompson /*@C 4a2c9b50fSJeremy L Thompson DMPlexGetLocalOffsets - Allocate and populate array of local offsets. 5a2c9b50fSJeremy L Thompson 6a2c9b50fSJeremy L Thompson Input Parameters: 7a2c9b50fSJeremy L Thompson dm - The DMPlex object 8a2c9b50fSJeremy L Thompson domain_label - label for DMPlex domain, or NULL for whole domain 9a2c9b50fSJeremy L Thompson label_value - Stratum value 10a2c9b50fSJeremy L Thompson height - Height of target cells in DMPlex topology 11a2c9b50fSJeremy L Thompson dm_field - Index of DMPlex field 12a2c9b50fSJeremy L Thompson 13a2c9b50fSJeremy L Thompson Output Parameters: 14a2c9b50fSJeremy L Thompson num_cells - Number of local cells 15a2c9b50fSJeremy L Thompson cell_size - Size of each cell, given by cell_size * num_comp = num_dof 16a2c9b50fSJeremy L Thompson num_comp - Number of components per dof 17a2c9b50fSJeremy L Thompson l_size - Size of local vector 18a2c9b50fSJeremy L Thompson offsets - Allocated offsets array for cells 19a2c9b50fSJeremy L Thompson 20a2c9b50fSJeremy L Thompson Notes: Allocate and populate array of shape [num_cells, cell_size] defining offsets for each value (cell, node) for local vector of the DMPlex field. All offsets are in the range [0, l_size - 1]. Caller is responsible for freeing the offsets array using PetscFree(). 21a2c9b50fSJeremy L Thompson 22a2c9b50fSJeremy L Thompson Level: developer 23a2c9b50fSJeremy L Thompson 24a2c9b50fSJeremy L Thompson .seealso: DMPlexGetClosureIndices(), DMPlexSetClosurePermutationTensor(), DMPlexGetCeedRestriction() 25a2c9b50fSJeremy L Thompson @*/ 26a2c9b50fSJeremy L Thompson PetscErrorCode DMPlexGetLocalOffsets(DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, PetscInt *num_cells, PetscInt *cell_size, PetscInt *num_comp, PetscInt *l_size, PetscInt **offsets) 27a2c9b50fSJeremy L Thompson { 28a2c9b50fSJeremy L Thompson PetscErrorCode ierr; 29a2c9b50fSJeremy L Thompson 30a2c9b50fSJeremy L Thompson PetscFunctionBeginUser; 31a2c9b50fSJeremy L Thompson PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32a2c9b50fSJeremy L Thompson PetscDS ds = NULL; 33a2c9b50fSJeremy L Thompson PetscFE fe; 34a2c9b50fSJeremy L Thompson PetscSection section; 35*7a17eebaSJed Brown PetscInt dim, ds_field = -1; 36a2c9b50fSJeremy L Thompson PetscInt *restr_indices; 37a2c9b50fSJeremy L Thompson const PetscInt *iter_indices; 38a2c9b50fSJeremy L Thompson IS iter_is; 39a2c9b50fSJeremy L Thompson 40a2c9b50fSJeremy L Thompson ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 41a2c9b50fSJeremy L Thompson ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 42*7a17eebaSJed Brown { 43*7a17eebaSJed Brown IS field_is; 44*7a17eebaSJed Brown const PetscInt *fields; 45*7a17eebaSJed Brown PetscInt num_fields; 46*7a17eebaSJed Brown ierr = DMGetRegionDS(dm, domain_label, &field_is, &ds);CHKERRQ(ierr); 47a2c9b50fSJeremy L Thompson // Translate dm_field to ds_field 48*7a17eebaSJed Brown ierr = ISGetIndices(field_is, &fields);CHKERRQ(ierr); 49*7a17eebaSJed Brown ierr = ISGetSize(field_is, &num_fields);CHKERRQ(ierr); 50*7a17eebaSJed Brown for (PetscInt i=0; i<num_fields; i++) { 51*7a17eebaSJed Brown if (dm_field == fields[i]) { 52*7a17eebaSJed Brown ds_field = i; 53a2c9b50fSJeremy L Thompson break; 54a2c9b50fSJeremy L Thompson } 55a2c9b50fSJeremy L Thompson } 56*7a17eebaSJed Brown ierr = ISRestoreIndices(field_is, &fields); 57a2c9b50fSJeremy L Thompson } 58a2c9b50fSJeremy L Thompson if (ds_field == -1) SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Could not find dm_field %D in DS", dm_field); 59a2c9b50fSJeremy L Thompson 60a2c9b50fSJeremy L Thompson { 61a2c9b50fSJeremy L Thompson PetscInt depth; 62a2c9b50fSJeremy L Thompson DMLabel depth_label; 63a2c9b50fSJeremy L Thompson IS depth_is; 64a2c9b50fSJeremy L Thompson ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 65a2c9b50fSJeremy L Thompson ierr = DMPlexGetDepthLabel(dm, &depth_label);CHKERRQ(ierr); 66a2c9b50fSJeremy L Thompson ierr = DMLabelGetStratumIS(depth_label, depth - height, &depth_is);CHKERRQ(ierr); 67a2c9b50fSJeremy L Thompson if (domain_label) { 68a2c9b50fSJeremy L Thompson IS domain_is; 69a2c9b50fSJeremy L Thompson ierr = DMLabelGetStratumIS(domain_label, label_value, &domain_is);CHKERRQ(ierr); 70a2c9b50fSJeremy L Thompson if (domain_is) { // domainIS is non-empty 71a2c9b50fSJeremy L Thompson ierr = ISIntersect(depth_is, domain_is, &iter_is);CHKERRQ(ierr); 72a2c9b50fSJeremy L Thompson ierr = ISDestroy(&domain_is);CHKERRQ(ierr); 73a2c9b50fSJeremy L Thompson } else { // domainIS is NULL (empty) 74a2c9b50fSJeremy L Thompson iter_is = NULL; 75a2c9b50fSJeremy L Thompson } 76a2c9b50fSJeremy L Thompson ierr = ISDestroy(&depth_is);CHKERRQ(ierr); 77a2c9b50fSJeremy L Thompson } else { 78a2c9b50fSJeremy L Thompson iter_is = depth_is; 79a2c9b50fSJeremy L Thompson } 80a2c9b50fSJeremy L Thompson if (iter_is) { 81a2c9b50fSJeremy L Thompson ierr = ISGetLocalSize(iter_is, num_cells);CHKERRQ(ierr); 82a2c9b50fSJeremy L Thompson ierr = ISGetIndices(iter_is, &iter_indices);CHKERRQ(ierr); 83a2c9b50fSJeremy L Thompson } else { 84a2c9b50fSJeremy L Thompson *num_cells = 0; 85a2c9b50fSJeremy L Thompson iter_indices = NULL; 86a2c9b50fSJeremy L Thompson } 87a2c9b50fSJeremy L Thompson } 88a2c9b50fSJeremy L Thompson 89a2c9b50fSJeremy L Thompson { 90a2c9b50fSJeremy L Thompson PetscDualSpace dual_space; 91a2c9b50fSJeremy L Thompson PetscInt num_dual_basis_vectors; 92a2c9b50fSJeremy L Thompson ierr = PetscDSGetDiscretization(ds, ds_field, (PetscObject*)&fe);CHKERRQ(ierr); 93a2c9b50fSJeremy L Thompson ierr = PetscFEGetHeightSubspace(fe, height, &fe);CHKERRQ(ierr); 94a2c9b50fSJeremy L Thompson ierr = PetscFEGetDualSpace(fe, &dual_space);CHKERRQ(ierr); 95a2c9b50fSJeremy L Thompson ierr = PetscDualSpaceGetDimension(dual_space, &num_dual_basis_vectors);CHKERRQ(ierr); 96a2c9b50fSJeremy L Thompson ierr = PetscDualSpaceGetNumComponents(dual_space, num_comp);CHKERRQ(ierr); 97a2c9b50fSJeremy L Thompson if (num_dual_basis_vectors % *num_comp != 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for number of dual basis vectors %D not divisible by %D components", num_dual_basis_vectors, *num_comp); 98a2c9b50fSJeremy L Thompson *cell_size = num_dual_basis_vectors / *num_comp; 99a2c9b50fSJeremy L Thompson } 100a2c9b50fSJeremy L Thompson PetscInt restr_size = (*num_cells)*(*cell_size); 101a2c9b50fSJeremy L Thompson ierr = PetscMalloc1(restr_size, &restr_indices);CHKERRQ(ierr); 102a2c9b50fSJeremy L Thompson PetscInt cell_offset = 0; 103a2c9b50fSJeremy L Thompson 104a2c9b50fSJeremy L Thompson PetscInt P = (PetscInt) pow(*cell_size, 1.0 / (dim - height)); 105a2c9b50fSJeremy L Thompson for (PetscInt p = 0; p < *num_cells; p++) { 106a2c9b50fSJeremy L Thompson PetscBool flip = PETSC_FALSE; 107a2c9b50fSJeremy L Thompson PetscInt c = iter_indices[p]; 108a2c9b50fSJeremy L Thompson PetscInt num_indices, *indices; 109a2c9b50fSJeremy L Thompson PetscInt field_offsets[17]; // max number of fields plus 1 110a2c9b50fSJeremy L Thompson ierr = DMPlexGetClosureIndices(dm, section, section, c, PETSC_TRUE, &num_indices, &indices, field_offsets, NULL);CHKERRQ(ierr); 111a2c9b50fSJeremy L Thompson if (height > 0) { 112a2c9b50fSJeremy L Thompson PetscInt num_cells_support, num_faces, start = -1; 113a2c9b50fSJeremy L Thompson const PetscInt *orients, *faces, *cells; 114a2c9b50fSJeremy L Thompson ierr = DMPlexGetSupport(dm, c, &cells);CHKERRQ(ierr); 115a2c9b50fSJeremy L Thompson ierr = DMPlexGetSupportSize(dm, c, &num_cells_support);CHKERRQ(ierr); 116a2c9b50fSJeremy L Thompson if (num_cells_support != 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Expected one cell in support of exterior face, but got %D cells", num_cells_support); 117a2c9b50fSJeremy L Thompson ierr = DMPlexGetCone(dm, cells[0], &faces);CHKERRQ(ierr); 118a2c9b50fSJeremy L Thompson ierr = DMPlexGetConeSize(dm, cells[0], &num_faces);CHKERRQ(ierr); 119a2c9b50fSJeremy L Thompson for (PetscInt i=0; i<num_faces; i++) {if (faces[i] == c) start = i;} 120a2c9b50fSJeremy L Thompson if (start < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_CORRUPT, "Could not find face %D in cone of its support", c); 121a2c9b50fSJeremy L Thompson ierr = DMPlexGetConeOrientation(dm, cells[0], &orients);CHKERRQ(ierr); 122a2c9b50fSJeremy L Thompson if (orients[start] < 0) flip = PETSC_TRUE; 123a2c9b50fSJeremy L Thompson } 124a2c9b50fSJeremy L Thompson 125a2c9b50fSJeremy L Thompson for (PetscInt i = 0; i < *cell_size; i++) { 126a2c9b50fSJeremy L Thompson PetscInt ii = i; 127a2c9b50fSJeremy L Thompson if (flip) { 128a2c9b50fSJeremy L Thompson if (*cell_size == P) ii = *cell_size - 1 - i; 129a2c9b50fSJeremy L Thompson else if (*cell_size == P*P) { 130a2c9b50fSJeremy L Thompson PetscInt row = i / P, col = i % P; 131a2c9b50fSJeremy L Thompson ii = row + col * P; 132a2c9b50fSJeremy L Thompson } else SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for flipping point with cell size %D != P (%D) or P^2", *cell_size, P); 133a2c9b50fSJeremy L Thompson } 134a2c9b50fSJeremy L Thompson // Essential boundary conditions are encoded as -(loc+1), but we don't care so we decode. 135a2c9b50fSJeremy L Thompson PetscInt loc = indices[field_offsets[dm_field] + ii*(*num_comp)]; 136a2c9b50fSJeremy L Thompson restr_indices[cell_offset++] = loc >= 0 ? loc : -(loc + 1); 137a2c9b50fSJeremy L Thompson } 138a2c9b50fSJeremy L Thompson ierr = DMPlexRestoreClosureIndices(dm, section, section, c, PETSC_TRUE, &num_indices, &indices, field_offsets, NULL);CHKERRQ(ierr); 139a2c9b50fSJeremy L Thompson } 140a2c9b50fSJeremy L Thompson if (cell_offset != restr_size) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Shape mismatch, offsets array of shape (%D, %D) initialized for %D nodes", *num_cells, (*cell_size), cell_offset); 141a2c9b50fSJeremy L Thompson if (iter_is) { ierr = ISRestoreIndices(iter_is, &iter_indices);CHKERRQ(ierr); } 142a2c9b50fSJeremy L Thompson ierr = ISDestroy(&iter_is);CHKERRQ(ierr); 143a2c9b50fSJeremy L Thompson 144a2c9b50fSJeremy L Thompson *offsets = restr_indices; 145a2c9b50fSJeremy L Thompson ierr = PetscSectionGetStorageSize(section, l_size);CHKERRQ(ierr); 146a2c9b50fSJeremy L Thompson PetscFunctionReturn(0); 147a2c9b50fSJeremy L Thompson } 148a2c9b50fSJeremy L Thompson 149a2c9b50fSJeremy L Thompson #if defined(PETSC_HAVE_LIBCEED) 150f918ec44SMatthew G. Knepley #include <petscdmplexceed.h> 151f918ec44SMatthew G. Knepley 152a2c9b50fSJeremy L Thompson /*@C 153a2c9b50fSJeremy L Thompson DMPlexGetCeedRestriction - Define the libCEED map from the local vector (Lvector) to the cells (Evector) 154a2c9b50fSJeremy L Thompson 155a2c9b50fSJeremy L Thompson Input Parameters: 156a2c9b50fSJeremy L Thompson dm - The DMPlex object 157a2c9b50fSJeremy L Thompson domain_label - label for DMPlex domain, or NULL for the whole domain 158a2c9b50fSJeremy L Thompson label_value - Stratum value 159a2c9b50fSJeremy L Thompson height - Height of target cells in DMPlex topology 160a2c9b50fSJeremy L Thompson dm_field - Index of DMPlex field 161a2c9b50fSJeremy L Thompson 162a2c9b50fSJeremy L Thompson Output Parameters: 163a2c9b50fSJeremy L Thompson ERestrict - libCEED restriction from local vector to to the cells 164a2c9b50fSJeremy L Thompson 165a2c9b50fSJeremy L Thompson Level: developer 166a2c9b50fSJeremy L Thompson @*/ 167a2c9b50fSJeremy L Thompson PetscErrorCode DMPlexGetCeedRestriction(DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, CeedElemRestriction *ERestrict) 168f918ec44SMatthew G. Knepley { 169f918ec44SMatthew G. Knepley PetscErrorCode ierr; 170f918ec44SMatthew G. Knepley 171f918ec44SMatthew G. Knepley PetscFunctionBeginUser; 172f918ec44SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 173f918ec44SMatthew G. Knepley PetscValidPointer(ERestrict, 2); 174f918ec44SMatthew G. Knepley if (!dm->ceedERestrict) { 175a2c9b50fSJeremy L Thompson PetscInt num_cells, cell_size, num_comp, lvec_size, *restr_indices; 176a2c9b50fSJeremy L Thompson CeedElemRestriction elem_restr; 177f918ec44SMatthew G. Knepley Ceed ceed; 178f918ec44SMatthew G. Knepley 179a2c9b50fSJeremy L Thompson ierr = DMPlexGetLocalOffsets(dm, domain_label, label_value, height, dm_field, &num_cells, &cell_size, &num_comp, &lvec_size, &restr_indices);CHKERRQ(ierr); 180f918ec44SMatthew G. Knepley 181f918ec44SMatthew G. Knepley ierr = DMGetCeed(dm, &ceed);CHKERRQ(ierr); 182a2c9b50fSJeremy L Thompson ierr = CeedElemRestrictionCreate(ceed, num_cells, cell_size, num_comp, 1, lvec_size, CEED_MEM_HOST, CEED_COPY_VALUES, restr_indices, &elem_restr);CHKERRQ_CEED(ierr); 183a2c9b50fSJeremy L Thompson ierr = PetscFree(restr_indices);CHKERRQ(ierr); 184a2c9b50fSJeremy L Thompson dm->ceedERestrict = elem_restr; 185f918ec44SMatthew G. Knepley } 186f918ec44SMatthew G. Knepley *ERestrict = dm->ceedERestrict; 187f918ec44SMatthew G. Knepley PetscFunctionReturn(0); 188f918ec44SMatthew G. Knepley } 189f918ec44SMatthew G. Knepley 190f918ec44SMatthew G. Knepley #endif 191