1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()` 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 396b867d5aSJose E. Roman + user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()` 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97064a246eSJacob Faibussowitsch PetscValidBoolPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley 10770034214SMatthew G. Knepley PetscFunctionBeginHot; 1089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 1104b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1114b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11270034214SMatthew G. Knepley const PetscInt *support = NULL; 11370034214SMatthew G. Knepley PetscInt supportSize, s, q; 11470034214SMatthew G. Knepley 1159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 11770034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 118527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 11970034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12070034214SMatthew G. Knepley } 12163a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 12270034214SMatthew G. Knepley } 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley *adjSize = numAdj; 12570034214SMatthew G. Knepley PetscFunctionReturn(0); 12670034214SMatthew G. Knepley } 12770034214SMatthew G. Knepley 12870034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 12970034214SMatthew G. Knepley { 13070034214SMatthew G. Knepley const PetscInt *support = NULL; 13170034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13270034214SMatthew G. Knepley 13370034214SMatthew G. Knepley PetscFunctionBeginHot; 1349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 1359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 1364b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1374b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 13870034214SMatthew G. Knepley const PetscInt *cone = NULL; 13970034214SMatthew G. Knepley PetscInt coneSize, c, q; 14070034214SMatthew G. Knepley 1419566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 1429566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 14370034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 144527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14570034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14670034214SMatthew G. Knepley } 14763a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley } 15070034214SMatthew G. Knepley *adjSize = numAdj; 15170034214SMatthew G. Knepley PetscFunctionReturn(0); 15270034214SMatthew G. Knepley } 15370034214SMatthew G. Knepley 15470034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15570034214SMatthew G. Knepley { 15670034214SMatthew G. Knepley PetscInt *star = NULL; 15770034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 15870034214SMatthew G. Knepley 15970034214SMatthew G. Knepley PetscFunctionBeginHot; 1609566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star)); 16170034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16270034214SMatthew G. Knepley const PetscInt *closure = NULL; 16370034214SMatthew G. Knepley PetscInt closureSize, c, q; 16470034214SMatthew G. Knepley 1659566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure)); 16670034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 167527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 16870034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 16970034214SMatthew G. Knepley } 17063a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 17170034214SMatthew G. Knepley } 1729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure)); 17370034214SMatthew G. Knepley } 1749566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star)); 17570034214SMatthew G. Knepley *adjSize = numAdj; 17670034214SMatthew G. Knepley PetscFunctionReturn(0); 17770034214SMatthew G. Knepley } 17870034214SMatthew G. Knepley 1795b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18070034214SMatthew G. Knepley { 18179bad331SMatthew G. Knepley static PetscInt asiz = 0; 1828b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1838b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1848b0b4c70SToby Isaac PetscInt maxAdjSize; 1858b0b4c70SToby Isaac PetscSection aSec = NULL; 1868b0b4c70SToby Isaac IS aIS = NULL; 1878b0b4c70SToby Isaac const PetscInt *anchors; 1883c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 18970034214SMatthew G. Knepley 19070034214SMatthew G. Knepley PetscFunctionBeginHot; 1915b317d89SToby Isaac if (useAnchors) { 1929566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS)); 1938b0b4c70SToby Isaac if (aSec) { 1949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(aSec,&maxAnchors)); 19524c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 1969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(aSec,&aStart,&aEnd)); 1979566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS,&anchors)); 1988b0b4c70SToby Isaac } 1998b0b4c70SToby Isaac } 20079bad331SMatthew G. Knepley if (!*adj) { 20124c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20279bad331SMatthew G. Knepley 2039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart,&pEnd)); 2049566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 205412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 2069566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS)); 20724c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 20824c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 20924c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2108b0b4c70SToby Isaac asiz *= maxAnchors; 21124c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 2129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(asiz,adj)); 21379bad331SMatthew G. Knepley } 21479bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2158b0b4c70SToby Isaac maxAdjSize = *adjSize; 2163c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2179566063dSJacob Faibussowitsch PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx)); 2183c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 2199566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj)); 22070034214SMatthew G. Knepley } else if (useCone) { 2219566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj)); 22270034214SMatthew G. Knepley } else { 2239566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj)); 22470034214SMatthew G. Knepley } 2255b317d89SToby Isaac if (useAnchors && aSec) { 2268b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2278b0b4c70SToby Isaac PetscInt numAdj = origSize; 2288b0b4c70SToby Isaac PetscInt i = 0, j; 2298b0b4c70SToby Isaac PetscInt *orig = *adj; 2308b0b4c70SToby Isaac 2318b0b4c70SToby Isaac while (i < origSize) { 2328b0b4c70SToby Isaac PetscInt p = orig[i]; 2338b0b4c70SToby Isaac PetscInt aDof = 0; 2348b0b4c70SToby Isaac 2358b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&aDof)); 2378b0b4c70SToby Isaac } 2388b0b4c70SToby Isaac if (aDof) { 2398b0b4c70SToby Isaac PetscInt aOff; 2408b0b4c70SToby Isaac PetscInt s, q; 2418b0b4c70SToby Isaac 2428b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2438b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2448b0b4c70SToby Isaac } 2458b0b4c70SToby Isaac origSize--; 2468b0b4c70SToby Isaac numAdj--; 2479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&aOff)); 2488b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 249527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2508b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2518b0b4c70SToby Isaac } 25263a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 2538b0b4c70SToby Isaac } 2548b0b4c70SToby Isaac } 2558b0b4c70SToby Isaac else { 2568b0b4c70SToby Isaac i++; 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac } 2598b0b4c70SToby Isaac *adjSize = numAdj; 2609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS,&anchors)); 2618b0b4c70SToby Isaac } 26270034214SMatthew G. Knepley PetscFunctionReturn(0); 26370034214SMatthew G. Knepley } 26470034214SMatthew G. Knepley 26570034214SMatthew G. Knepley /*@ 26670034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley Input Parameters: 26970034214SMatthew G. Knepley + dm - The DM object 2706b867d5aSJose E. Roman - p - The point 27170034214SMatthew G. Knepley 2726b867d5aSJose E. Roman Input/Output Parameters: 2736b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE; 2746b867d5aSJose E. Roman on output the number of adjacent points 2756b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize; 2766b867d5aSJose E. Roman on output contains the adjacent points 27770034214SMatthew G. Knepley 27870034214SMatthew G. Knepley Level: advanced 27970034214SMatthew G. Knepley 28095452b02SPatrick Sanan Notes: 28195452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28270034214SMatthew G. Knepley 283db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()` 28470034214SMatthew G. Knepley @*/ 28570034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 28670034214SMatthew G. Knepley { 2871cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 28870034214SMatthew G. Knepley 28970034214SMatthew G. Knepley PetscFunctionBeginHot; 29070034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 291dadcf809SJacob Faibussowitsch PetscValidIntPointer(adjSize,3); 29270034214SMatthew G. Knepley PetscValidPointer(adj,4); 2939566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 2949566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 2959566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj)); 29670034214SMatthew G. Knepley PetscFunctionReturn(0); 29770034214SMatthew G. Knepley } 29808633170SToby Isaac 299b0a623aaSMatthew G. Knepley /*@ 300b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 301b0a623aaSMatthew G. Knepley 302d083f849SBarry Smith Collective on dm 303b0a623aaSMatthew G. Knepley 304b0a623aaSMatthew G. Knepley Input Parameters: 305b0a623aaSMatthew G. Knepley + dm - The DM 3066b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity 3076b867d5aSJose E. Roman . rootRankSection - 3086b867d5aSJose E. Roman . rootRanks - 3096b867d5aSJose E. Roman . leftRankSection - 3106b867d5aSJose E. Roman - leafRanks - 311b0a623aaSMatthew G. Knepley 312b0a623aaSMatthew G. Knepley Output Parameters: 313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 314b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley Level: developer 317b0a623aaSMatthew G. Knepley 318db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()` 319b0a623aaSMatthew G. Knepley @*/ 320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 321b0a623aaSMatthew G. Knepley { 322b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 323b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 324b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 325b0a623aaSMatthew G. Knepley const PetscInt *nranks; 326b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 327b0a623aaSMatthew G. Knepley PetscBT neighbors; 328b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3299852e123SBarry Smith PetscMPIInt size, proc, rank; 330b0a623aaSMatthew G. Knepley 331b0a623aaSMatthew G. Knepley PetscFunctionBegin; 332b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 333b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 334064a246eSJacob Faibussowitsch if (processRanks) {PetscValidPointer(processRanks, 7);} 335064a246eSJacob Faibussowitsch if (sfProcess) {PetscValidPointer(sfProcess, 8);} 3369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size)); 3379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 3389566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints)); 3399566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(size, &neighbors)); 3409566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(size, neighbors)); 341b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 3429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd)); 3439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootRanks, &nranks)); 344b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 345b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 346b0a623aaSMatthew G. Knepley 3479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof)); 3489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff)); 3499566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n])); 350b0a623aaSMatthew G. Knepley } 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootRanks, &nranks)); 352b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 3539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd)); 3549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafRanks, &nranks)); 355b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 356b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 357b0a623aaSMatthew G. Knepley 3589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof)); 3599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff)); 3609566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n])); 361b0a623aaSMatthew G. Knepley } 3629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafRanks, &nranks)); 363b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 364b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 365b0a623aaSMatthew G. Knepley /* Calculate edges */ 366b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3679852e123SBarry Smith for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 3689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &ranksNew)); 3699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &localPointsNew)); 3709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew)); 3719852e123SBarry Smith for (proc = 0, n = 0; proc < size; ++proc) { 372b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 373b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 374b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 375b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 376b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 377b0a623aaSMatthew G. Knepley ++n; 378b0a623aaSMatthew G. Knepley } 379b0a623aaSMatthew G. Knepley } 3809566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&neighbors)); 3819566063dSJacob Faibussowitsch if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks)); 3829566063dSJacob Faibussowitsch else PetscCall(PetscFree(ranksNew)); 383b0a623aaSMatthew G. Knepley if (sfProcess) { 3849566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess)); 3859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF")); 3869566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfProcess)); 3879566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER)); 388b0a623aaSMatthew G. Knepley } 389b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 390b0a623aaSMatthew G. Knepley } 391b0a623aaSMatthew G. Knepley 392b0a623aaSMatthew G. Knepley /*@ 393b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 394b0a623aaSMatthew G. Knepley 395d083f849SBarry Smith Collective on dm 396b0a623aaSMatthew G. Knepley 397b0a623aaSMatthew G. Knepley Input Parameter: 398b0a623aaSMatthew G. Knepley . dm - The DM 399b0a623aaSMatthew G. Knepley 400b0a623aaSMatthew G. Knepley Output Parameters: 401b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 402b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 403b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 404b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 405b0a623aaSMatthew G. Knepley 406b0a623aaSMatthew G. Knepley Level: developer 407b0a623aaSMatthew G. Knepley 408db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 409b0a623aaSMatthew G. Knepley @*/ 410b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 411b0a623aaSMatthew G. Knepley { 412b0a623aaSMatthew G. Knepley MPI_Comm comm; 413b0a623aaSMatthew G. Knepley PetscSF sfPoint; 414b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 415b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 416b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 417b0a623aaSMatthew G. Knepley PetscMPIInt rank; 418b0a623aaSMatthew G. Knepley 419b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 4219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4229566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4239566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 424b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 4259566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) rootSection, "Root Section")); 4269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd)); 4279566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 4289566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 4299566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p-pStart])); 4309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 431b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 4329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection, &nedges)); 4339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd-pStart, &myrank)); 4349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nedges, &remoterank)); 435b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 4369566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank)); 4379566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank)); 4389566063dSJacob Faibussowitsch PetscCall(PetscFree(myrank)); 4399566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank)); 440b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 4419566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) leafSection, "Leaf Section")); 4429566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank)); 443b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 444b0a623aaSMatthew G. Knepley } 445b0a623aaSMatthew G. Knepley 446c506a872SMatthew G. Knepley #if 0 447c506a872SMatthew G. Knepley static PetscErrorCode DMPlexCopyOverlapLabels(DM dm, DM ndm) 448c506a872SMatthew G. Knepley { 449c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 450c506a872SMatthew G. Knepley DM_Plex *nmesh = (DM_Plex *) ndm->data; 451c506a872SMatthew G. Knepley 452c506a872SMatthew G. Knepley PetscFunctionBegin; 453c506a872SMatthew G. Knepley if (mesh->numOvLabels) { 454c506a872SMatthew G. Knepley const char *name; 455c506a872SMatthew G. Knepley PetscInt l; 456c506a872SMatthew G. Knepley 457c506a872SMatthew G. Knepley nmesh->numOvLabels = mesh->numOvLabels; 458c506a872SMatthew G. Knepley for (l = 0; l < mesh->numOvLabels; ++l) { 459c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovLabels[l], &name)); 460c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovLabels[l])); 461c506a872SMatthew G. Knepley nmesh->ovValues[l] = mesh->ovValues[l]; 462c506a872SMatthew G. Knepley } 463c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovExLabel, &name)); 464c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovExLabel)); 465c506a872SMatthew G. Knepley nmesh->ovExValue = mesh->ovExValue; 466c506a872SMatthew G. Knepley } 467c506a872SMatthew G. Knepley PetscFunctionReturn(0); 468c506a872SMatthew G. Knepley } 469c506a872SMatthew G. Knepley #endif 470c506a872SMatthew G. Knepley 471278397a0SMatthew G. Knepley /*@C 472c506a872SMatthew G. Knepley DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes 473b0a623aaSMatthew G. Knepley 474d083f849SBarry Smith Collective on dm 475b0a623aaSMatthew G. Knepley 476b0a623aaSMatthew G. Knepley Input Parameters: 477b0a623aaSMatthew G. Knepley + dm - The DM 47824d039d7SMichael Lange . levels - Number of overlap levels 479b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 480b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 481b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 482b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 483b0a623aaSMatthew G. Knepley 484064ec1f3Sprj- Output Parameter: 485b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 486b0a623aaSMatthew G. Knepley 487b0a623aaSMatthew G. Knepley Level: developer 488b0a623aaSMatthew G. Knepley 489c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 490b0a623aaSMatthew G. Knepley @*/ 491dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 492b0a623aaSMatthew G. Knepley { 493e540f424SMichael Lange MPI_Comm comm; 494b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 495874ddda9SLisandro Dalcin PetscSF sfPoint; 496b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 497b0a623aaSMatthew G. Knepley const PetscInt *local; 4981fd9873aSMichael Lange const PetscInt *nrank, *rrank; 499b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 5001fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 5019852e123SBarry Smith PetscMPIInt rank, size; 50231bc6364SLisandro Dalcin PetscBool flg; 503b0a623aaSMatthew G. Knepley 504b0a623aaSMatthew G. Knepley PetscFunctionBegin; 5056ba1a4c7SVaclav Hapla *ovLabel = NULL; 5069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 5079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5096ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 5109566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 5119566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 512d1674c6dSMatthew Knepley if (!levels) { 513d1674c6dSMatthew Knepley /* Add owned points */ 5149566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5159566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 516d1674c6dSMatthew Knepley PetscFunctionReturn(0); 517d1674c6dSMatthew Knepley } 5189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 5199566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 5209566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 521b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 522b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 523b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 524b0a623aaSMatthew G. Knepley 5259566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj)); 5269566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank)); 527b0a623aaSMatthew G. Knepley } 5289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootrank, &rrank)); 5299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafrank, &nrank)); 530b0a623aaSMatthew G. Knepley /* Handle roots */ 531b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 532b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 533b0a623aaSMatthew G. Knepley 534b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 535b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 5369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, p, &neighbors)); 537b0a623aaSMatthew G. Knepley if (neighbors) { 5389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection, p, &noff)); 5399566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 540b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 541b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 542b0a623aaSMatthew G. Knepley 543b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5449566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 545b0a623aaSMatthew G. Knepley } 546b0a623aaSMatthew G. Knepley } 547b0a623aaSMatthew G. Knepley } 548b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 5499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootSection, p, &neighbors)); 550b0a623aaSMatthew G. Knepley if (!neighbors) continue; 5519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootSection, p, &noff)); 5529566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 553b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 554b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 555b0a623aaSMatthew G. Knepley 556b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5579566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 558b0a623aaSMatthew G. Knepley } 559b0a623aaSMatthew G. Knepley } 5609566063dSJacob Faibussowitsch PetscCall(PetscFree(adj)); 5619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootrank, &rrank)); 5629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafrank, &nrank)); 56324d039d7SMichael Lange /* Add additional overlap levels */ 564be200f8dSMichael Lange for (l = 1; l < levels; l++) { 565be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 5669566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank)); 567be200f8dSMichael Lange /* Add next level of point donations to the label */ 5689566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank)); 569be200f8dSMichael Lange } 57026a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5719566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 5729566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg)); 573e540f424SMichael Lange if (flg) { 574825f8a23SLisandro Dalcin PetscViewer viewer; 5759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 5769566063dSJacob Faibussowitsch PetscCall(DMLabelView(ovAdjByRank, viewer)); 577b0a623aaSMatthew G. Knepley } 578874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 5799566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5809566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 581a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 5829566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 583e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 5849566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 5859566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 586e540f424SMichael Lange } 587e540f424SMichael Lange /* Clean up */ 5889566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&ovAdjByRank)); 589b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 590b0a623aaSMatthew G. Knepley } 59170034214SMatthew G. Knepley 592c506a872SMatthew G. Knepley static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank) 593c506a872SMatthew G. Knepley { 594c506a872SMatthew G. Knepley PetscInt neighbors, el; 595c506a872SMatthew G. Knepley 596c506a872SMatthew G. Knepley PetscFunctionBegin; 597c506a872SMatthew G. Knepley PetscCall(PetscSectionGetDof(section, p, &neighbors)); 598c506a872SMatthew G. Knepley if (neighbors) { 599c506a872SMatthew G. Knepley PetscInt *adj = NULL; 600c506a872SMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, noff, n, a; 601c506a872SMatthew G. Knepley PetscMPIInt rank; 602c506a872SMatthew G. Knepley 603c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 604c506a872SMatthew G. Knepley PetscCall(PetscSectionGetOffset(section, p, &noff)); 605c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 606c506a872SMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 607c506a872SMatthew G. Knepley const PetscInt remoteRank = ranks[noff+n]; 608c506a872SMatthew G. Knepley 609c506a872SMatthew G. Knepley if (remoteRank == rank) continue; 610c506a872SMatthew G. Knepley for (a = 0; a < adjSize; ++a) { 611c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 612c506a872SMatthew G. Knepley 613c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 614c506a872SMatthew G. Knepley PetscInt exVal; 615c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 616c506a872SMatthew G. Knepley if (exVal == exValue[el]) {insert = PETSC_FALSE; break;} 617c506a872SMatthew G. Knepley } 618c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 619c506a872SMatthew G. Knepley } 620c506a872SMatthew G. Knepley } 621c506a872SMatthew G. Knepley } 622c506a872SMatthew G. Knepley PetscFunctionReturn(0); 623c506a872SMatthew G. Knepley } 624c506a872SMatthew G. Knepley 625c506a872SMatthew G. Knepley /*@C 626c506a872SMatthew G. Knepley DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes 627c506a872SMatthew G. Knepley 628c506a872SMatthew G. Knepley Collective on dm 629c506a872SMatthew G. Knepley 630c506a872SMatthew G. Knepley Input Parameters: 631c506a872SMatthew G. Knepley + dm - The DM 632c506a872SMatthew G. Knepley . numLabels - The number of labels to draw candidate points from 633c506a872SMatthew G. Knepley . label - An array of labels containing candidate points 634c506a872SMatthew G. Knepley . value - An array of label values marking the candidate points 635c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion 636c506a872SMatthew G. Knepley . exLabel - An array of labels indicating points to be excluded, or NULL 637c506a872SMatthew G. Knepley . exValue - An array of label values to be excluded, or NULL 638c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point 639c506a872SMatthew G. Knepley . rootrank - The rank of each edge into the root point 640c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 641c506a872SMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 642c506a872SMatthew G. Knepley 643c506a872SMatthew G. Knepley Output Parameter: 644c506a872SMatthew G. Knepley . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 645c506a872SMatthew G. Knepley 646c506a872SMatthew G. Knepley Note: 647c506a872SMatthew G. Knepley The candidate points are only added to the overlap if they are adjacent to a shared point 648c506a872SMatthew G. Knepley 649c506a872SMatthew G. Knepley Level: developer 650c506a872SMatthew G. Knepley 651c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 652c506a872SMatthew G. Knepley @*/ 653c506a872SMatthew G. Knepley PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[], 654c506a872SMatthew G. Knepley PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 655c506a872SMatthew G. Knepley { 656c506a872SMatthew G. Knepley MPI_Comm comm; 657c506a872SMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 658c506a872SMatthew G. Knepley PetscSF sfPoint; 659c506a872SMatthew G. Knepley const PetscSFNode *remote; 660c506a872SMatthew G. Knepley const PetscInt *local; 661c506a872SMatthew G. Knepley const PetscInt *nrank, *rrank; 662c506a872SMatthew G. Knepley PetscInt *adj = NULL; 663c506a872SMatthew G. Knepley PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l, el; 664c506a872SMatthew G. Knepley PetscMPIInt rank, size; 665c506a872SMatthew G. Knepley PetscBool flg; 666c506a872SMatthew G. Knepley 667c506a872SMatthew G. Knepley PetscFunctionBegin; 668c506a872SMatthew G. Knepley *ovLabel = NULL; 669c506a872SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 670c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 671c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 672c506a872SMatthew G. Knepley if (size == 1) PetscFunctionReturn(0); 673c506a872SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sfPoint)); 674c506a872SMatthew G. Knepley PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 675c506a872SMatthew G. Knepley PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 676c506a872SMatthew G. Knepley PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 677c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 678c506a872SMatthew G. Knepley PetscCall(ISGetIndices(rootrank, &rrank)); 679c506a872SMatthew G. Knepley PetscCall(ISGetIndices(leafrank, &nrank)); 680c506a872SMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 681c506a872SMatthew G. Knepley IS valIS; 682c506a872SMatthew G. Knepley const PetscInt *points; 683c506a872SMatthew G. Knepley PetscInt n; 684c506a872SMatthew G. Knepley 685c506a872SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS)); 686c506a872SMatthew G. Knepley if (!valIS) continue; 687c506a872SMatthew G. Knepley PetscCall(ISGetIndices(valIS, &points)); 688c506a872SMatthew G. Knepley PetscCall(ISGetLocalSize(valIS, &n)); 689c506a872SMatthew G. Knepley for (PetscInt i = 0; i < n; ++i) { 690c506a872SMatthew G. Knepley const PetscInt p = points[i]; 691c506a872SMatthew G. Knepley 692c506a872SMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 693c506a872SMatthew G. Knepley PetscInt loc, adjSize = PETSC_DETERMINE; 694c506a872SMatthew G. Knepley 695c506a872SMatthew G. Knepley /* Handle leaves: shared with the root point */ 696c506a872SMatthew G. Knepley if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc)); 697c506a872SMatthew G. Knepley else loc = (p >= 0 && p < nleaves) ? p : -1; 698c506a872SMatthew G. Knepley if (loc >= 0) { 699c506a872SMatthew G. Knepley const PetscInt remoteRank = remote[loc].rank; 700c506a872SMatthew G. Knepley 701c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 702c506a872SMatthew G. Knepley for (PetscInt a = 0; a < adjSize; ++a) { 703c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 704c506a872SMatthew G. Knepley 705c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 706c506a872SMatthew G. Knepley PetscInt exVal; 707c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 708c506a872SMatthew G. Knepley if (exVal == exValue[el]) {insert = PETSC_FALSE; break;} 709c506a872SMatthew G. Knepley } 710c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 711c506a872SMatthew G. Knepley } 712c506a872SMatthew G. Knepley } 713c506a872SMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 714c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank); 715c506a872SMatthew G. Knepley } 716c506a872SMatthew G. Knepley /* Roots are shared with leaves */ 717c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank); 718c506a872SMatthew G. Knepley } 719c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(valIS, &points)); 720c506a872SMatthew G. Knepley PetscCall(ISDestroy(&valIS)); 721c506a872SMatthew G. Knepley } 722c506a872SMatthew G. Knepley PetscCall(PetscFree(adj)); 723c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(rootrank, &rrank)); 724c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(leafrank, &nrank)); 725c506a872SMatthew G. Knepley /* We require the closure in the overlap */ 726c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 727c506a872SMatthew G. Knepley PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg)); 728c506a872SMatthew G. Knepley if (flg) { 729c506a872SMatthew G. Knepley PetscViewer viewer; 730c506a872SMatthew G. Knepley PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 731c506a872SMatthew G. Knepley PetscCall(DMLabelView(ovAdjByRank, viewer)); 732c506a872SMatthew G. Knepley } 733c506a872SMatthew G. Knepley /* Invert sender to receiver label */ 734c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 735c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 736c506a872SMatthew G. Knepley /* Add owned points, except for shared local points */ 737c506a872SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 738c506a872SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 739c506a872SMatthew G. Knepley PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 740c506a872SMatthew G. Knepley PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 741c506a872SMatthew G. Knepley } 742c506a872SMatthew G. Knepley /* Clean up */ 743c506a872SMatthew G. Knepley PetscCall(DMLabelDestroy(&ovAdjByRank)); 744c506a872SMatthew G. Knepley PetscFunctionReturn(0); 745c506a872SMatthew G. Knepley } 746c506a872SMatthew G. Knepley 74724cc2ca5SMatthew G. Knepley /*@C 74824cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 74924cc2ca5SMatthew G. Knepley 750d083f849SBarry Smith Collective on dm 75124cc2ca5SMatthew G. Knepley 75224cc2ca5SMatthew G. Knepley Input Parameters: 75324cc2ca5SMatthew G. Knepley + dm - The DM 75424cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 75524cc2ca5SMatthew G. Knepley 756064ec1f3Sprj- Output Parameter: 757a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 75824cc2ca5SMatthew G. Knepley 75924cc2ca5SMatthew G. Knepley Level: developer 76024cc2ca5SMatthew G. Knepley 761db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()` 76224cc2ca5SMatthew G. Knepley @*/ 76346f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 76446f9b1c3SMichael Lange { 76546f9b1c3SMichael Lange MPI_Comm comm; 7669852e123SBarry Smith PetscMPIInt rank, size; 76746f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 76846f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 76946f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 77046f9b1c3SMichael Lange PetscSFNode *iremote; 77146f9b1c3SMichael Lange PetscSF pointSF; 77246f9b1c3SMichael Lange const PetscInt *sharedLocal; 77346f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 77446f9b1c3SMichael Lange 77546f9b1c3SMichael Lange PetscFunctionBegin; 77646f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 7789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 7799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 7809566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 78146f9b1c3SMichael Lange 78246f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 7839566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote)); 7849566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 78546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 7869566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 78746f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 78846f9b1c3SMichael Lange } 78946f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 7909566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE)); 7919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE)); 79246f9b1c3SMichael Lange 7932d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 7949566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx)); 79546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 79646f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 79746f9b1c3SMichael Lange depthShift[dim] = 0; 79846f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 79946f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 80046f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 80146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 8029566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 80346f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 80446f9b1c3SMichael Lange } 80546f9b1c3SMichael Lange 80646f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 8079566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 80846f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 8099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &ilocal)); 8109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &iremote)); 81146f9b1c3SMichael Lange /* First map local points to themselves */ 81246f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 8139566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 81446f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 81546f9b1c3SMichael Lange point = p + depthShift[d]; 81646f9b1c3SMichael Lange ilocal[point] = point; 81746f9b1c3SMichael Lange iremote[point].index = p; 81846f9b1c3SMichael Lange iremote[point].rank = rank; 81946f9b1c3SMichael Lange depthIdx[d]++; 82046f9b1c3SMichael Lange } 82146f9b1c3SMichael Lange } 82246f9b1c3SMichael Lange 82346f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 8249566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &pointSF)); 8259566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote)); 82646f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 8279566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 82846f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 82946f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 83046f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 83146f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 83246f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 83346f9b1c3SMichael Lange } 83446f9b1c3SMichael Lange } 83546f9b1c3SMichael Lange } 83646f9b1c3SMichael Lange 83746f9b1c3SMichael Lange /* Now add the incoming overlap points */ 83846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 83946f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 84046f9b1c3SMichael Lange ilocal[point] = point; 84146f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 84246f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 84346f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 84446f9b1c3SMichael Lange } 8459566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths,remoteDepths)); 84646f9b1c3SMichael Lange 8479566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 8489566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF")); 8499566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*migrationSF)); 8509566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8519566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 85246f9b1c3SMichael Lange 8539566063dSJacob Faibussowitsch PetscCall(PetscFree3(depthRecv, depthShift, depthIdx)); 85470034214SMatthew G. Knepley PetscFunctionReturn(0); 85570034214SMatthew G. Knepley } 85670034214SMatthew G. Knepley 857a9f1d5b2SMichael Lange /*@ 858f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 859a9f1d5b2SMichael Lange 860064ec1f3Sprj- Input Parameters: 861a9f1d5b2SMichael Lange + dm - The DM 862a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 863a9f1d5b2SMichael Lange 864a9f1d5b2SMichael Lange Output Parameter: 865a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 866a9f1d5b2SMichael Lange 867412e9a14SMatthew G. Knepley Note: 868412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 869412e9a14SMatthew G. Knepley 870a9f1d5b2SMichael Lange Level: developer 871a9f1d5b2SMichael Lange 872db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 873a9f1d5b2SMichael Lange @*/ 874a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 875a9f1d5b2SMichael Lange { 876a9f1d5b2SMichael Lange MPI_Comm comm; 8779852e123SBarry Smith PetscMPIInt rank, size; 878412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 879412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 880412e9a14SMatthew G. Knepley PetscInt *ilocal; 881a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 882412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 883a9f1d5b2SMichael Lange const PetscSFNode *iremote; 884a9f1d5b2SMichael Lange 885a9f1d5b2SMichael Lange PetscFunctionBegin; 886a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 8889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 8899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 8909566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &ldepth)); 8919566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm)); 89363a3b9bcSJacob Faibussowitsch PetscCheck(!(ldepth >= 0) || !(depth != ldepth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth); 8949566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0)); 895a9f1d5b2SMichael Lange 896a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 8979566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote)); 8989566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 8997fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 9009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 901f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 902412e9a14SMatthew G. Knepley DMPolytopeType ct; 903f0e73a3dSToby Isaac 9049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 905412e9a14SMatthew G. Knepley pointDepths[p].index = d; 906412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 907f0e73a3dSToby Isaac } 908412e9a14SMatthew G. Knepley } 909412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;} 9109566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE)); 9119566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE)); 912412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 9139566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx)); 914412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 915412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 916412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 917412e9a14SMatthew G. Knepley } else { 918412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 919412e9a14SMatthew G. Knepley } 920412e9a14SMatthew G. Knepley } 921412e9a14SMatthew G. Knepley { 922412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 923412e9a14SMatthew G. Knepley 9248238f61eSMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) 9258238f61eSMatthew G. Knepley Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells 9268238f61eSMatthew G. Knepley */ 927412e9a14SMatthew G. Knepley depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1; 928412e9a14SMatthew G. Knepley dims[0] = dim; dims[1] = 0; dims[2] = dim-1; dims[3] = 1; 929412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 930412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 931412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 932412e9a14SMatthew G. Knepley 933412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 9348238f61eSMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue; 935412e9a14SMatthew G. Knepley ctShift[c] = shift; 936412e9a14SMatthew G. Knepley shift += ctRecv[c]; 937412e9a14SMatthew G. Knepley } 938412e9a14SMatthew G. Knepley depthShift[dep] = shift; 939412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 940412e9a14SMatthew G. Knepley } 941412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 942412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c); 943412e9a14SMatthew G. Knepley 9448238f61eSMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) { 945412e9a14SMatthew G. Knepley ctShift[c] = shift; 946412e9a14SMatthew G. Knepley shift += ctRecv[c]; 947412e9a14SMatthew G. Knepley } 948412e9a14SMatthew G. Knepley } 949412e9a14SMatthew G. Knepley } 950a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 9519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &ilocal)); 9527fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 953412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 954412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType) remoteDepths[p].rank; 9557fab53ddSMatthew G. Knepley 956412e9a14SMatthew G. Knepley if ((PetscInt) ct < 0) { 9577fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 958412e9a14SMatthew G. Knepley ++depthIdx[dep]; 959412e9a14SMatthew G. Knepley } else { 960412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 961412e9a14SMatthew G. Knepley ++ctIdx[ct]; 962412e9a14SMatthew G. Knepley } 963a9f1d5b2SMichael Lange } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 9659566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Migration SF")); 9669566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode*)iremote, PETSC_COPY_VALUES)); 9679566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths,remoteDepths)); 9689566063dSJacob Faibussowitsch PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx)); 9699566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0)); 970a9f1d5b2SMichael Lange PetscFunctionReturn(0); 971a9f1d5b2SMichael Lange } 972a9f1d5b2SMichael Lange 97370034214SMatthew G. Knepley /*@ 97470034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 97570034214SMatthew G. Knepley 976d083f849SBarry Smith Collective on dm 97770034214SMatthew G. Knepley 97870034214SMatthew G. Knepley Input Parameters: 97970034214SMatthew G. Knepley + dm - The DMPlex object 98070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 98170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 982cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 98370034214SMatthew G. Knepley 98470034214SMatthew G. Knepley Output Parameters: 98570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 986cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 98770034214SMatthew G. Knepley 98870034214SMatthew G. Knepley Level: developer 98970034214SMatthew G. Knepley 990db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()` 99170034214SMatthew G. Knepley @*/ 99270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 99370034214SMatthew G. Knepley { 99470034214SMatthew G. Knepley PetscSF fieldSF; 99570034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 99670034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 99770034214SMatthew G. Knepley 99870034214SMatthew G. Knepley PetscFunctionBegin; 9999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0)); 10009566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 100170034214SMatthew G. Knepley 10029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10039566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE)); 10049566063dSJacob Faibussowitsch PetscCall(VecSetType(newVec,dm->vectype)); 100570034214SMatthew G. Knepley 10069566063dSJacob Faibussowitsch PetscCall(VecGetArray(originalVec, &originalValues)); 10079566063dSJacob Faibussowitsch PetscCall(VecGetArray(newVec, &newValues)); 10089566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10099566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10109566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE)); 10119566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE)); 10129566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newVec, &newValues)); 10149566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(originalVec, &originalValues)); 10159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0)); 101670034214SMatthew G. Knepley PetscFunctionReturn(0); 101770034214SMatthew G. Knepley } 101870034214SMatthew G. Knepley 101970034214SMatthew G. Knepley /*@ 102070034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 102170034214SMatthew G. Knepley 1022d083f849SBarry Smith Collective on dm 102370034214SMatthew G. Knepley 102470034214SMatthew G. Knepley Input Parameters: 102570034214SMatthew G. Knepley + dm - The DMPlex object 102670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 102770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 102870034214SMatthew G. Knepley - originalIS - The existing data 102970034214SMatthew G. Knepley 103070034214SMatthew G. Knepley Output Parameters: 103170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 103270034214SMatthew G. Knepley - newIS - The new data 103370034214SMatthew G. Knepley 103470034214SMatthew G. Knepley Level: developer 103570034214SMatthew G. Knepley 1036db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()` 103770034214SMatthew G. Knepley @*/ 103870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 103970034214SMatthew G. Knepley { 104070034214SMatthew G. Knepley PetscSF fieldSF; 104170034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 104270034214SMatthew G. Knepley const PetscInt *originalValues; 104370034214SMatthew G. Knepley 104470034214SMatthew G. Knepley PetscFunctionBegin; 10459566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0)); 10469566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 104770034214SMatthew G. Knepley 10489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSize, &newValues)); 105070034214SMatthew G. Knepley 10519566063dSJacob Faibussowitsch PetscCall(ISGetIndices(originalIS, &originalValues)); 10529566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10539566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE)); 10559566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE)); 10569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(originalIS, &originalValues)); 10589566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS)); 10599566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0)); 106070034214SMatthew G. Knepley PetscFunctionReturn(0); 106170034214SMatthew G. Knepley } 106270034214SMatthew G. Knepley 106370034214SMatthew G. Knepley /*@ 106470034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 106570034214SMatthew G. Knepley 1066d083f849SBarry Smith Collective on dm 106770034214SMatthew G. Knepley 106870034214SMatthew G. Knepley Input Parameters: 106970034214SMatthew G. Knepley + dm - The DMPlex object 107070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 107170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 107270034214SMatthew G. Knepley . datatype - The type of data 107370034214SMatthew G. Knepley - originalData - The existing data 107470034214SMatthew G. Knepley 107570034214SMatthew G. Knepley Output Parameters: 107670034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 107770034214SMatthew G. Knepley - newData - The new data 107870034214SMatthew G. Knepley 107970034214SMatthew G. Knepley Level: developer 108070034214SMatthew G. Knepley 1081db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()` 108270034214SMatthew G. Knepley @*/ 108370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 108470034214SMatthew G. Knepley { 108570034214SMatthew G. Knepley PetscSF fieldSF; 108670034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 108770034214SMatthew G. Knepley PetscMPIInt dataSize; 108870034214SMatthew G. Knepley 108970034214SMatthew G. Knepley PetscFunctionBegin; 10909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0)); 10919566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 109270034214SMatthew G. Knepley 10939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(datatype, &dataSize)); 10959566063dSJacob Faibussowitsch PetscCall(PetscMalloc(fieldSize * dataSize, newData)); 109670034214SMatthew G. Knepley 10979566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10989566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData,MPI_REPLACE)); 11009566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData,MPI_REPLACE)); 11019566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 11029566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0)); 110370034214SMatthew G. Knepley PetscFunctionReturn(0); 110470034214SMatthew G. Knepley } 110570034214SMatthew G. Knepley 110624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1107cc71bff1SMichael Lange { 1108cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1109cc71bff1SMichael Lange MPI_Comm comm; 1110cc71bff1SMichael Lange PetscSF coneSF; 1111cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 1112ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 1113cc71bff1SMichael Lange PetscBool flg; 1114cc71bff1SMichael Lange 1115cc71bff1SMichael Lange PetscFunctionBegin; 1116cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11170c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 11189566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0)); 1119cc71bff1SMichael Lange /* Distribute cone section */ 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &originalConeSection)); 11229566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection)); 11239566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection)); 11249566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmParallel)); 1125cc71bff1SMichael Lange /* Communicate and renumber cones */ 11269566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF)); 11279566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 11289566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dm, &cones)); 1129ac04eaf7SToby Isaac if (original) { 1130ac04eaf7SToby Isaac PetscInt numCones; 1131ac04eaf7SToby Isaac 11329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(originalConeSection,&numCones)); 11339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numCones,&globCones)); 11349566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones)); 1135367003a6SStefano Zampini } else { 1136ac04eaf7SToby Isaac globCones = cones; 1137ac04eaf7SToby Isaac } 11389566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dmParallel, &newCones)); 11399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE)); 11409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE)); 1141*1baa6e33SBarry Smith if (original) PetscCall(PetscFree(globCones)); 11429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize)); 11439566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones)); 114476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11453533c52bSMatthew G. Knepley PetscInt p; 11463533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 11473533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 114863a3b9bcSJacob Faibussowitsch if (newCones[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank,p));} 11493533c52bSMatthew G. Knepley } 115028b400f6SJacob Faibussowitsch PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11513533c52bSMatthew G. Knepley } 11529566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg)); 1153cc71bff1SMichael Lange if (flg) { 11549566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Cone Section:\n")); 11559566063dSJacob Faibussowitsch PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm))); 11569566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n")); 11579566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm))); 11589566063dSJacob Faibussowitsch PetscCall(PetscSFView(coneSF, NULL)); 1159cc71bff1SMichael Lange } 11609566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dm, &cones)); 11619566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones)); 11629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE)); 11639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE)); 11649566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coneSF)); 11659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0)); 1166eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1167cc71bff1SMichael Lange { 1168cc71bff1SMichael Lange PetscInt pStart, pEnd; 1169cc71bff1SMichael Lange 11709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd)); 11719566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd)); 1172cc71bff1SMichael Lange } 11739566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(dmParallel)); 11749566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(dmParallel)); 11751cf84007SMatthew G. Knepley { 11761cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 11771cf84007SMatthew G. Knepley 11789566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 11799566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 11809566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 11819566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 11821cf84007SMatthew G. Knepley } 1183cc71bff1SMichael Lange PetscFunctionReturn(0); 1184cc71bff1SMichael Lange } 1185cc71bff1SMichael Lange 118624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 11870df0e737SMichael Lange { 11880df0e737SMichael Lange MPI_Comm comm; 11899318fe57SMatthew G. Knepley DM cdm, cdmParallel; 11900df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 11910df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 11920df0e737SMichael Lange PetscInt bs; 119390b157c4SStefano Zampini PetscBool isper; 11940df0e737SMichael Lange const char *name; 11950df0e737SMichael Lange const PetscReal *maxCell, *L; 11965dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 11970df0e737SMichael Lange 11980df0e737SMichael Lange PetscFunctionBegin; 11990df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12000c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12010df0e737SMichael Lange 12029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12039566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &originalCoordSection)); 12049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection)); 12059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates)); 12060df0e737SMichael Lange if (originalCoordinates) { 12079566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 12089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) originalCoordinates, &name)); 12099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) newCoordinates, name)); 12100df0e737SMichael Lange 12119566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12129566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates)); 12139566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12149566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, bs)); 12159566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 12160df0e737SMichael Lange } 12179566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd)); 12189566063dSJacob Faibussowitsch PetscCall(DMSetPeriodicity(dmParallel, isper, maxCell, L, bd)); 12199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &cdm)); 12209566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel)); 12219566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(cdm, cdmParallel)); 12220df0e737SMichael Lange PetscFunctionReturn(0); 12230df0e737SMichael Lange } 12240df0e737SMichael Lange 122524cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 12260df0e737SMichael Lange { 1227df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 12280df0e737SMichael Lange MPI_Comm comm; 12297980c9d4SMatthew G. Knepley DMLabel depthLabel; 12300df0e737SMichael Lange PetscMPIInt rank; 12317980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1232df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1233df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 12340df0e737SMichael Lange 12350df0e737SMichael Lange PetscFunctionBegin; 12360df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12370c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12380c86c063SLisandro Dalcin 12399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0)); 12409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 12420df0e737SMichael Lange 1243df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 12449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 12459566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 12469566063dSJacob Faibussowitsch if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject) depthLabel, &depthState)); 1247df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 12481c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm)); 1249df0420ecSMatthew G. Knepley if (sendDepth) { 12509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel)); 12519566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE)); 1252df0420ecSMatthew G. Knepley } 1253d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 12549566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLocalLabels)); 1255d995df53SMatthew G. Knepley numLabels = numLocalLabels; 12569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm)); 1257627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 12585d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1259bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 126083e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1261d67d17b1SMatthew G. Knepley const char *name = NULL; 12620df0e737SMichael Lange 1263d67d17b1SMatthew G. Knepley if (hasLabels) { 12649566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 12650df0e737SMichael Lange /* Skip "depth" because it is recreated */ 12669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) label, &name)); 12679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 1268d67d17b1SMatthew G. Knepley } 12699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm)); 127083e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 12719566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, migrationSF, &labelNew)); 127283e10cb3SLisandro Dalcin if (isDepth) { 12737980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 12747980c9d4SMatthew G. Knepley PetscInt gdepth; 12757980c9d4SMatthew G. Knepley 12761c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm)); 127763a3b9bcSJacob Faibussowitsch PetscCheck(!(depth >= 0) || !(gdepth != depth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth); 12787980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 12797980c9d4SMatthew G. Knepley PetscBool has; 12807980c9d4SMatthew G. Knepley 12819566063dSJacob Faibussowitsch PetscCall(DMLabelHasStratum(labelNew, d, &has)); 12829566063dSJacob Faibussowitsch if (!has) PetscCall(DMLabelAddStratum(labelNew, d)); 12837980c9d4SMatthew G. Knepley } 12847980c9d4SMatthew G. Knepley } 12859566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmParallel, labelNew)); 128683e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 12879566063dSJacob Faibussowitsch if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput)); 12881c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm)); 12899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) labelNew, &name)); 12909566063dSJacob Faibussowitsch PetscCall(DMSetLabelOutput(dmParallel, name, isOutput)); 12919566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&labelNew)); 12920df0e737SMichael Lange } 12939566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0)); 12940df0e737SMichael Lange PetscFunctionReturn(0); 12950df0e737SMichael Lange } 12960df0e737SMichael Lange 129724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1298a6f36705SMichael Lange { 129915078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 130015078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1301a6f36705SMichael Lange MPI_Comm comm; 1302a6f36705SMichael Lange DM refTree; 1303a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1304a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1305a6f36705SMichael Lange PetscBool flg; 1306a6f36705SMichael Lange 1307a6f36705SMichael Lange PetscFunctionBegin; 1308a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13090c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 13109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1311a6f36705SMichael Lange 1312a6f36705SMichael Lange /* Set up tree */ 13139566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm,&refTree)); 13149566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmParallel,refTree)); 13159566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL)); 1316a6f36705SMichael Lange if (origParentSection) { 1317a6f36705SMichael Lange PetscInt pStart, pEnd; 131808633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1319a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1320a6f36705SMichael Lange PetscSF parentSF; 1321a6f36705SMichael Lange 13229566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 13239566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection)); 13249566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newParentSection,pStart,pEnd)); 13259566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection)); 13269566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF)); 13279566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsetsParents)); 13289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newParentSection,&newParentSize)); 13299566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs)); 133008633170SToby Isaac if (original) { 133108633170SToby Isaac PetscInt numParents; 133208633170SToby Isaac 13339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(origParentSection,&numParents)); 13349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numParents,&globParents)); 13359566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents)); 133608633170SToby Isaac } 133708633170SToby Isaac else { 133808633170SToby Isaac globParents = origParents; 133908633170SToby Isaac } 13409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE)); 13419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE)); 1342*1baa6e33SBarry Smith if (original) PetscCall(PetscFree(globParents)); 13439566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE)); 13449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE)); 13459566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents)); 134676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 13474a54e071SToby Isaac PetscInt p; 13484a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 13494a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 135063a3b9bcSJacob Faibussowitsch if (newParents[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p));} 13514a54e071SToby Isaac } 135228b400f6SJacob Faibussowitsch PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 13534a54e071SToby Isaac } 13549566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg)); 1355a6f36705SMichael Lange if (flg) { 13569566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Parent Section: \n")); 13579566063dSJacob Faibussowitsch PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm))); 13589566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n")); 13599566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm))); 13609566063dSJacob Faibussowitsch PetscCall(PetscSFView(parentSF, NULL)); 1361a6f36705SMichael Lange } 13629566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs)); 13639566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newParentSection)); 13649566063dSJacob Faibussowitsch PetscCall(PetscFree2(newParents,newChildIDs)); 13659566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&parentSF)); 1366a6f36705SMichael Lange } 136715078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1368a6f36705SMichael Lange PetscFunctionReturn(0); 1369a6f36705SMichael Lange } 13700df0e737SMichael Lange 137124cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 13724eca1733SMichael Lange { 13739852e123SBarry Smith PetscMPIInt rank, size; 13744eca1733SMichael Lange MPI_Comm comm; 13754eca1733SMichael Lange 13764eca1733SMichael Lange PetscFunctionBegin; 13774eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13780c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 13794eca1733SMichael Lange 13804eca1733SMichael Lange /* Create point SF for parallel mesh */ 13819566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0)); 13829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 13839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 13849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 13854eca1733SMichael Lange { 13864eca1733SMichael Lange const PetscInt *leaves; 13874eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 13884eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 13894eca1733SMichael Lange PetscInt pStart, pEnd; 13904eca1733SMichael Lange 13919566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 13929566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL)); 13939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots,&rowners,numLeaves,&lowners)); 13944eca1733SMichael Lange for (p=0; p<numRoots; p++) { 13954eca1733SMichael Lange rowners[p].rank = -1; 13964eca1733SMichael Lange rowners[p].index = -1; 13974eca1733SMichael Lange } 13989566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 13999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14004eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14014eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 14024eca1733SMichael Lange lowners[p].rank = rank; 14034eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 14044eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 14054eca1733SMichael Lange lowners[p].rank = -2; 14064eca1733SMichael Lange lowners[p].index = -2; 14074eca1733SMichael Lange } 14084eca1733SMichael Lange } 14094eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 14104eca1733SMichael Lange rowners[p].rank = -3; 14114eca1733SMichael Lange rowners[p].index = -3; 14124eca1733SMichael Lange } 14139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14149566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14159566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14169566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14174eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14181dca8a05SBarry Smith PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 14194eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 14204eca1733SMichael Lange } 14219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints)); 14229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &remotePoints)); 14234eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 14244eca1733SMichael Lange if (lowners[p].rank != rank) { 14254eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 14264eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 14274eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 14284eca1733SMichael Lange ++gp; 14294eca1733SMichael Lange } 14304eca1733SMichael Lange } 14319566063dSJacob Faibussowitsch PetscCall(PetscFree2(rowners,lowners)); 14329566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER)); 14339566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions((dmParallel)->sf)); 14344eca1733SMichael Lange } 14351cf84007SMatthew G. Knepley { 14361cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 14371cf84007SMatthew G. Knepley 14389566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 14399566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 14409566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 14419566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 14421cf84007SMatthew G. Knepley } 14439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0)); 14444eca1733SMichael Lange PetscFunctionReturn(0); 14454eca1733SMichael Lange } 14464eca1733SMichael Lange 144798ba2d7fSLawrence Mitchell /*@ 144898ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 144998ba2d7fSLawrence Mitchell 145098ba2d7fSLawrence Mitchell Input Parameters: 145198ba2d7fSLawrence Mitchell + dm - The DMPlex object 145298ba2d7fSLawrence Mitchell - flg - Balance the partition? 145398ba2d7fSLawrence Mitchell 145498ba2d7fSLawrence Mitchell Level: intermediate 145598ba2d7fSLawrence Mitchell 1456db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()` 145798ba2d7fSLawrence Mitchell @*/ 145898ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 145998ba2d7fSLawrence Mitchell { 146098ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 146198ba2d7fSLawrence Mitchell 146298ba2d7fSLawrence Mitchell PetscFunctionBegin; 146398ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 146498ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 146598ba2d7fSLawrence Mitchell } 146698ba2d7fSLawrence Mitchell 146798ba2d7fSLawrence Mitchell /*@ 146898ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 146998ba2d7fSLawrence Mitchell 147098ba2d7fSLawrence Mitchell Input Parameter: 1471a2b725a8SWilliam Gropp . dm - The DMPlex object 147298ba2d7fSLawrence Mitchell 147398ba2d7fSLawrence Mitchell Output Parameter: 1474a2b725a8SWilliam Gropp . flg - Balance the partition? 147598ba2d7fSLawrence Mitchell 147698ba2d7fSLawrence Mitchell Level: intermediate 147798ba2d7fSLawrence Mitchell 1478db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()` 147998ba2d7fSLawrence Mitchell @*/ 148098ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 148198ba2d7fSLawrence Mitchell { 148298ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 148398ba2d7fSLawrence Mitchell 148498ba2d7fSLawrence Mitchell PetscFunctionBegin; 148598ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1486534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 148798ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 148898ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 148998ba2d7fSLawrence Mitchell } 149098ba2d7fSLawrence Mitchell 1491fc02256fSLawrence Mitchell typedef struct { 1492fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1493fc02256fSLawrence Mitchell } Petsc3Int; 1494fc02256fSLawrence Mitchell 1495fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 14962eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) 1497fc02256fSLawrence Mitchell { 1498fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1499fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1500fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1501fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1502fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1503fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1504fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1505fc02256fSLawrence Mitchell a[i].index = b[i].index; 1506fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1507fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1508fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1509fc02256fSLawrence Mitchell a[i].index = b[i].index; 1510fc02256fSLawrence Mitchell } 1511fc02256fSLawrence Mitchell } 1512fc02256fSLawrence Mitchell } 1513fc02256fSLawrence Mitchell } 1514fc02256fSLawrence Mitchell 1515f5bf2dbfSMichael Lange /*@C 1516a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1517f5bf2dbfSMichael Lange 1518064ec1f3Sprj- Input Parameters: 1519f5bf2dbfSMichael Lange + dm - The source DMPlex object 1520f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 1521d8d19677SJose E. Roman - ownership - Flag causing a vote to determine point ownership 1522f5bf2dbfSMichael Lange 1523f5bf2dbfSMichael Lange Output Parameter: 1524d8d19677SJose E. Roman . pointSF - The star forest describing the point overlap in the remapped DM 1525f5bf2dbfSMichael Lange 15263618482eSVaclav Hapla Notes: 15273618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 15283618482eSVaclav Hapla 1529f5bf2dbfSMichael Lange Level: developer 1530f5bf2dbfSMichael Lange 1531db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 1532f5bf2dbfSMichael Lange @*/ 1533f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1534f5bf2dbfSMichael Lange { 153523193802SMatthew G. Knepley PetscMPIInt rank, size; 15361627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1537f5bf2dbfSMichael Lange PetscInt *pointLocal; 1538f5bf2dbfSMichael Lange const PetscInt *leaves; 1539f5bf2dbfSMichael Lange const PetscSFNode *roots; 1540f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 154123193802SMatthew G. Knepley Vec shifts; 1542cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 154323193802SMatthew G. Knepley const PetscScalar *shift = NULL; 154423193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 154598ba2d7fSLawrence Mitchell PetscBool balance; 1546f5bf2dbfSMichael Lange 1547f5bf2dbfSMichael Lange PetscFunctionBegin; 1548f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 15509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size)); 15519566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0)); 1552f5bf2dbfSMichael Lange 15539566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 15549566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots)); 15559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes)); 1556f5bf2dbfSMichael Lange if (ownership) { 1557fc02256fSLawrence Mitchell MPI_Op op; 1558fc02256fSLawrence Mitchell MPI_Datatype datatype; 1559fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 156023193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 156198ba2d7fSLawrence Mitchell if (balance) { 156223193802SMatthew G. Knepley PetscRandom r; 156323193802SMatthew G. Knepley 15649566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r)); 15659566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(r, 0, 2467*size)); 15669566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &shifts)); 15679566063dSJacob Faibussowitsch PetscCall(VecSetSizes(shifts, numShifts, numShifts)); 15689566063dSJacob Faibussowitsch PetscCall(VecSetType(shifts, VECSTANDARD)); 15699566063dSJacob Faibussowitsch PetscCall(VecSetRandom(shifts, r)); 15709566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&r)); 15719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(shifts, &shift)); 157223193802SMatthew G. Knepley } 157323193802SMatthew G. Knepley 15749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &rootVote)); 15759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &leafVote)); 157623193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1577f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 157823193802SMatthew G. Knepley if (shiftDebug) { 157963a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size)); 158023193802SMatthew G. Knepley } 1581f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1582fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 1583fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1584fc02256fSLawrence Mitchell leafVote[p].index = p; 1585f5bf2dbfSMichael Lange } 1586f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 15871627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1588fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1589fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1590fc02256fSLawrence Mitchell rootVote[p].index = -3; 1591f5bf2dbfSMichael Lange } 15929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype)); 15939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&datatype)); 15949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op)); 15959566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op)); 15969566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op)); 15979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&op)); 15989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&datatype)); 1599c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1600fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1601fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1602c091126eSLawrence Mitchell } 16039566063dSJacob Faibussowitsch PetscCall(PetscFree(leafVote)); 16049566063dSJacob Faibussowitsch PetscCall(PetscFree(rootVote)); 1605f5bf2dbfSMichael Lange } else { 1606f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1607f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1608f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1609fc02256fSLawrence Mitchell } 1610f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1611f5bf2dbfSMichael Lange /* Write new local id into old location */ 1612f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 16136462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1614f5bf2dbfSMichael Lange } 1615f5bf2dbfSMichael Lange } 1616f5bf2dbfSMichael Lange } 16179566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE)); 16189566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE)); 1619f5bf2dbfSMichael Lange 162023193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1621b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 162223193802SMatthew G. Knepley } 16239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointLocal)); 16249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointRemote)); 1625f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1626b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 16273618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1628f5bf2dbfSMichael Lange pointLocal[idx] = p; 1629f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1630f5bf2dbfSMichael Lange idx++; 1631f5bf2dbfSMichael Lange } 1632f5bf2dbfSMichael Lange } 163323193802SMatthew G. Knepley if (shift) { 16349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(shifts, &shift)); 16359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&shifts)); 163623193802SMatthew G. Knepley } 16379566063dSJacob Faibussowitsch if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT)); 16389566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF)); 16399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*pointSF)); 16409566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER)); 16419566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootNodes, leafNodes)); 16429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0)); 16436c1ef331SVaclav Hapla if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF)); 1644f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1645f5bf2dbfSMichael Lange } 1646f5bf2dbfSMichael Lange 164715078cd4SMichael Lange /*@C 164815078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 164915078cd4SMichael Lange 1650d083f849SBarry Smith Collective on dm 165183655b49SVáclav Hapla 1652064ec1f3Sprj- Input Parameters: 165315078cd4SMichael Lange + dm - The source DMPlex object 1654d8d19677SJose E. Roman - sf - The star forest communication context describing the migration pattern 165515078cd4SMichael Lange 165615078cd4SMichael Lange Output Parameter: 1657d8d19677SJose E. Roman . targetDM - The target DMPlex object 165815078cd4SMichael Lange 1659b9f40539SMichael Lange Level: intermediate 166015078cd4SMichael Lange 1661db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 166215078cd4SMichael Lange @*/ 1663b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 166415078cd4SMichael Lange { 1665b9f40539SMichael Lange MPI_Comm comm; 1666cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1667b9f40539SMichael Lange PetscSF sfPoint; 166815078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1669ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 167015078cd4SMichael Lange 167115078cd4SMichael Lange PetscFunctionBegin; 167215078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0)); 16749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 16759566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16769566063dSJacob Faibussowitsch PetscCall(DMSetDimension(targetDM, dim)); 16779566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 16789566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(targetDM, cdim)); 167915078cd4SMichael Lange 1680bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 16819566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 16829566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 1683bfb0467fSMichael Lange if (nroots >= 0) { 1684b9f40539SMichael Lange IS isOriginal; 1685ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1686ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1687367003a6SStefano Zampini 1688b9f40539SMichael Lange /* Get the original point numbering */ 16899566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal)); 16909566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal)); 16919566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size)); 16929566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig)); 1693b9f40539SMichael Lange /* Convert to positive global numbers */ 1694b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1695b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 16969566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL)); 16979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &numbering_new)); 16989566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE)); 16999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE)); 17009566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration)); 17019566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig)); 17029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isOriginal)); 170315078cd4SMichael Lange } else { 1704bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 17059566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration)); 170615078cd4SMichael Lange } 1707a5a902f7SVaclav Hapla PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration")); 1708a5a902f7SVaclav Hapla PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view")); 170915078cd4SMichael Lange /* Migrate DM data to target DM */ 17109566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17119566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeLabels(dm, sf, targetDM)); 17129566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM)); 17139566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17149566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogOriginal)); 17159566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogMigration)); 17169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0)); 171715078cd4SMichael Lange PetscFunctionReturn(0); 171815078cd4SMichael Lange } 171915078cd4SMichael Lange 17203b8f15a2SMatthew G. Knepley /*@C 172170034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 172270034214SMatthew G. Knepley 1723d083f849SBarry Smith Collective on dm 172470034214SMatthew G. Knepley 1725064ec1f3Sprj- Input Parameters: 172670034214SMatthew G. Knepley + dm - The original DMPlex object 172770034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 172870034214SMatthew G. Knepley 1729064ec1f3Sprj- Output Parameters: 1730f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1731f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 173270034214SMatthew G. Knepley 1733f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 173470034214SMatthew G. Knepley 1735b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 173670034214SMatthew G. Knepley representation on the mesh. 173770034214SMatthew G. Knepley 173870034214SMatthew G. Knepley Level: intermediate 173970034214SMatthew G. Knepley 1740db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()` 174170034214SMatthew G. Knepley @*/ 174280cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 174370034214SMatthew G. Knepley { 174470034214SMatthew G. Knepley MPI_Comm comm; 174515078cd4SMichael Lange PetscPartitioner partitioner; 1746f8987ae8SMichael Lange IS cellPart; 1747f8987ae8SMichael Lange PetscSection cellPartSection; 1748cf86098cSMatthew G. Knepley DM dmCoord; 1749f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1750874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 175198ba2d7fSLawrence Mitchell PetscBool flg, balance; 1752874ddda9SLisandro Dalcin PetscMPIInt rank, size; 175370034214SMatthew G. Knepley 175470034214SMatthew G. Knepley PetscFunctionBegin; 175570034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1756d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1757d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1758d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 175970034214SMatthew G. Knepley 17600c86c063SLisandro Dalcin if (sf) *sf = NULL; 17610c86c063SLisandro Dalcin *dmParallel = NULL; 17629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 17639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 17649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17650c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 176670034214SMatthew G. Knepley 17679566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0)); 176815078cd4SMichael Lange /* Create cell partition */ 17699566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0)); 17709566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &cellPartSection)); 17719566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &partitioner)); 17729566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart)); 17739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0)); 1774f8987ae8SMichael Lange { 1775f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1776825f8a23SLisandro Dalcin IS is; 1777825f8a23SLisandro Dalcin PetscHSetI ht; 1778f8987ae8SMichael Lange const PetscInt *points; 17798e330a33SStefano Zampini PetscInt *iranks; 17808e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1781825f8a23SLisandro Dalcin 17829566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition)); 1783825f8a23SLisandro Dalcin /* Preallocate strata */ 17849566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 17859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1786825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 17879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 17889566063dSJacob Faibussowitsch if (npoints) PetscCall(PetscHSetIAdd(ht, proc)); 1789825f8a23SLisandro Dalcin } 17909566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(ht, &nranks)); 17919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nranks, &iranks)); 17929566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetElems(ht, &poff, iranks)); 17939566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 17949566063dSJacob Faibussowitsch PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks)); 17959566063dSJacob Faibussowitsch PetscCall(PetscFree(iranks)); 1796825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 17979566063dSJacob Faibussowitsch PetscCall(ISGetIndices(cellPart, &points)); 17989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1799f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 18009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 1801825f8a23SLisandro Dalcin if (!npoints) continue; 18029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff)); 18039566063dSJacob Faibussowitsch PetscCall(DMPlexClosurePoints_Private(dm, npoints, points+poff, &is)); 18049566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(lblPartition, proc, is)); 18059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 1806f8987ae8SMichael Lange } 18079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(cellPart, &points)); 1808f8987ae8SMichael Lange } 18099566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0)); 18106e203dd9SStefano Zampini 18119566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration)); 18129566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration)); 18139566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration)); 18149566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified)); 18159566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 181643f7d02bSMichael Lange sfMigration = sfStratified; 18179566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sfMigration)); 18189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0)); 18199566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg)); 182070034214SMatthew G. Knepley if (flg) { 18219566063dSJacob Faibussowitsch PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm))); 18229566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm))); 182370034214SMatthew G. Knepley } 1824f8987ae8SMichael Lange 182515078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 18269566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmParallel)); 18279566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh")); 18289566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel)); 182970034214SMatthew G. Knepley 1830a157612eSMichael Lange /* Build the point SF without overlap */ 18319566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 18329566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance)); 18339566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint)); 18349566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmParallel, sfPoint)); 18359566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord)); 18369566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 18379566063dSJacob Faibussowitsch if (flg) PetscCall(PetscSFView(sfPoint, NULL)); 183870034214SMatthew G. Knepley 1839a157612eSMichael Lange if (overlap > 0) { 184015078cd4SMichael Lange DM dmOverlap; 184157f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 184257f290daSMatthew G. Knepley const PetscInt *oldLeaves; 184357f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 184415078cd4SMichael Lange const PetscSFNode *oldRemote; 184515078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1846524e35f8SStefano Zampini 1847a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 18489566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap)); 18499566063dSJacob Faibussowitsch PetscCall(DMDestroy(dmParallel)); 1850a157612eSMichael Lange *dmParallel = dmOverlap; 1851c389ea9fSToby Isaac if (flg) { 18529566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n")); 18539566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfOverlap, NULL)); 1854c389ea9fSToby Isaac } 185543331d4aSMichael Lange 1856f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 18579566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote)); 18589566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL)); 18599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &newRemote)); 186057f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 186157f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 186257f290daSMatthew G. Knepley if (oldLeaves) { 186373e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 18649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(noldleaves, &permRemote)); 186557f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 186657f290daSMatthew G. Knepley oldRemote = permRemote; 186757f290daSMatthew G. Knepley } 18689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE)); 18699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE)); 18709566063dSJacob Faibussowitsch if (oldLeaves) PetscCall(PetscFree(oldRemote)); 18719566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sfOverlapPoint)); 18729566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER)); 18739566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 18749566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 187515078cd4SMichael Lange sfMigration = sfOverlapPoint; 1876c389ea9fSToby Isaac } 1877bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 18789566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblPartition)); 18799566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblMigration)); 18809566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&cellPartSection)); 18819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellPart)); 188245480ffeSMatthew G. Knepley /* Copy discretization */ 18839566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *dmParallel)); 188466fe0bfeSMatthew G. Knepley /* Create sfNatural */ 188566fe0bfeSMatthew G. Knepley if (dm->useNatural) { 188666fe0bfeSMatthew G. Knepley PetscSection section; 188766fe0bfeSMatthew G. Knepley 18889566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 18899566063dSJacob Faibussowitsch PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural)); 18909566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE)); 189166fe0bfeSMatthew G. Knepley } 18925de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel)); 1893721cbd76SMatthew G. Knepley /* Cleanup */ 1894f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 18959566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfMigration)); 18969566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 18979566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0)); 189870034214SMatthew G. Knepley PetscFunctionReturn(0); 189970034214SMatthew G. Knepley } 1900a157612eSMichael Lange 1901a157612eSMichael Lange /*@C 190224cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1903a157612eSMichael Lange 1904d083f849SBarry Smith Collective on dm 1905a157612eSMichael Lange 1906064ec1f3Sprj- Input Parameters: 1907064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 190857fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1909a157612eSMichael Lange 1910064ec1f3Sprj- Output Parameters: 1911a157612eSMichael Lange + sf - The PetscSF used for point distribution 1912a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1913a157612eSMichael Lange 1914dccdeccaSVaclav Hapla Notes: 1915dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1916a157612eSMichael Lange 1917b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1918a157612eSMichael Lange representation on the mesh. 1919a157612eSMichael Lange 1920c506a872SMatthew G. Knepley Options Database Keys: 1921c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names 1922c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...> - List of overlap label values 1923c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name> - Label used to exclude points from overlap 1924c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int> - Label value used to exclude points from overlap 1925c506a872SMatthew G. Knepley 1926dccdeccaSVaclav Hapla Level: advanced 1927a157612eSMichael Lange 1928db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()` 1929a157612eSMichael Lange @*/ 1930b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1931a157612eSMichael Lange { 1932c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1933a157612eSMichael Lange MPI_Comm comm; 19343567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1935a157612eSMichael Lange PetscSection rootSection, leafSection; 1936a157612eSMichael Lange IS rootrank, leafrank; 1937cf86098cSMatthew G. Knepley DM dmCoord; 1938a9f1d5b2SMichael Lange DMLabel lblOverlap; 1939f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1940a157612eSMichael Lange 1941a157612eSMichael Lange PetscFunctionBegin; 1942a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 194357fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1944a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1945a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1946a157612eSMichael Lange 19470c86c063SLisandro Dalcin if (sf) *sf = NULL; 19480c86c063SLisandro Dalcin *dmOverlap = NULL; 19499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 19509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 19519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19520c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1953c506a872SMatthew G. Knepley { 1954c506a872SMatthew G. Knepley // We need to get options for the _already_distributed mesh, so it must be done here 1955c506a872SMatthew G. Knepley PetscInt overlap; 1956c506a872SMatthew G. Knepley const char *prefix; 1957c506a872SMatthew G. Knepley char oldPrefix[PETSC_MAX_PATH_LEN]; 1958a157612eSMichael Lange 1959c506a872SMatthew G. Knepley oldPrefix[0] = '\0'; 1960c506a872SMatthew G. Knepley PetscCall(PetscObjectGetOptionsPrefix((PetscObject) dm, &prefix)); 1961c506a872SMatthew G. Knepley PetscCall(PetscStrcpy(oldPrefix, prefix)); 1962c506a872SMatthew G. Knepley PetscCall(PetscObjectAppendOptionsPrefix((PetscObject) dm, "dist_")); 1963c506a872SMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 1964c506a872SMatthew G. Knepley PetscObjectOptionsBegin((PetscObject) dm); 1965c506a872SMatthew G. Knepley PetscCall(DMSetFromOptions_Overlap_Plex(PetscOptionsObject, dm, &overlap)); 1966c506a872SMatthew G. Knepley PetscOptionsEnd(); 1967c506a872SMatthew G. Knepley PetscCall(PetscObjectSetOptionsPrefix((PetscObject) dm, oldPrefix[0] == '\0' ? NULL : oldPrefix)); 1968c506a872SMatthew G. Knepley } 19699566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 1970a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 19719566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0)); 19729566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &rootSection)); 19739566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &leafSection)); 19749566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank)); 1975c506a872SMatthew G. Knepley if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 1976c506a872SMatthew G. Knepley else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 1977a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 19789566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap)); 19799566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified)); 19809566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 1981a9f1d5b2SMichael Lange sfOverlap = sfStratified; 19829566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF")); 19839566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sfOverlap)); 1984a9f1d5b2SMichael Lange 19859566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 19869566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 19879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rootrank)); 19889566063dSJacob Faibussowitsch PetscCall(ISDestroy(&leafrank)); 19899566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0)); 1990a157612eSMichael Lange 1991a157612eSMichael Lange /* Build the overlapping DM */ 19929566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmOverlap)); 19939566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh")); 19949566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap)); 1995cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 199660667520SVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap)); 1997f5bf2dbfSMichael Lange /* Build the new point SF */ 19989566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint)); 19999566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmOverlap, sfPoint)); 20009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord)); 20019566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 20029566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2003a157612eSMichael Lange /* Cleanup overlap partition */ 20049566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblOverlap)); 2005a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 20069566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfOverlap)); 20079566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 2008a157612eSMichael Lange PetscFunctionReturn(0); 2009a157612eSMichael Lange } 20106462276dSToby Isaac 2011cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) 2012cb54e036SVaclav Hapla { 2013cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex*) dm->data; 2014cb54e036SVaclav Hapla 2015cb54e036SVaclav Hapla PetscFunctionBegin; 2016cb54e036SVaclav Hapla *overlap = mesh->overlap; 2017cb54e036SVaclav Hapla PetscFunctionReturn(0); 2018cb54e036SVaclav Hapla } 2019cb54e036SVaclav Hapla 202060667520SVaclav Hapla PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap) 202160667520SVaclav Hapla { 202260667520SVaclav Hapla DM_Plex *mesh=NULL; 202360667520SVaclav Hapla DM_Plex *meshSrc=NULL; 202460667520SVaclav Hapla 202560667520SVaclav Hapla PetscFunctionBegin; 202660667520SVaclav Hapla PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 202760667520SVaclav Hapla mesh = (DM_Plex*) dm->data; 202860667520SVaclav Hapla mesh->overlap = overlap; 202960667520SVaclav Hapla if (dmSrc) { 203060667520SVaclav Hapla PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX); 203160667520SVaclav Hapla meshSrc = (DM_Plex*) dmSrc->data; 203260667520SVaclav Hapla mesh->overlap += meshSrc->overlap; 203360667520SVaclav Hapla } 203460667520SVaclav Hapla PetscFunctionReturn(0); 203560667520SVaclav Hapla } 203660667520SVaclav Hapla 2037cb54e036SVaclav Hapla /*@ 2038c506a872SMatthew G. Knepley DMPlexGetOverlap - Get the width of the cell overlap 2039cb54e036SVaclav Hapla 2040cb54e036SVaclav Hapla Not collective 2041cb54e036SVaclav Hapla 2042cb54e036SVaclav Hapla Input Parameter: 2043cb54e036SVaclav Hapla . dm - The DM 2044cb54e036SVaclav Hapla 2045064ec1f3Sprj- Output Parameter: 2046c506a872SMatthew G. Knepley . overlap - the width of the cell overlap 2047cb54e036SVaclav Hapla 2048cb54e036SVaclav Hapla Level: intermediate 2049cb54e036SVaclav Hapla 2050c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()` 2051cb54e036SVaclav Hapla @*/ 2052cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) 2053cb54e036SVaclav Hapla { 2054cb54e036SVaclav Hapla PetscFunctionBegin; 2055cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2056c506a872SMatthew G. Knepley PetscValidIntPointer(overlap, 2); 2057cac4c232SBarry Smith PetscUseMethod(dm, "DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap)); 2058cb54e036SVaclav Hapla PetscFunctionReturn(0); 2059cb54e036SVaclav Hapla } 2060cb54e036SVaclav Hapla 2061c506a872SMatthew G. Knepley /*@ 2062c506a872SMatthew G. Knepley DMPlexSetOverlap - Set the width of the cell overlap 2063c506a872SMatthew G. Knepley 2064c506a872SMatthew G. Knepley Logically collective 2065c506a872SMatthew G. Knepley 2066c506a872SMatthew G. Knepley Input Parameters: 2067c506a872SMatthew G. Knepley + dm - The DM 2068c506a872SMatthew G. Knepley . dmSrc - The DM that produced this one, or NULL 2069c506a872SMatthew G. Knepley - overlap - the width of the cell overlap 2070c506a872SMatthew G. Knepley 2071c506a872SMatthew G. Knepley Note: 2072c506a872SMatthew G. Knepley The overlap from dmSrc is added to dm 2073c506a872SMatthew G. Knepley 2074c506a872SMatthew G. Knepley Level: intermediate 2075c506a872SMatthew G. Knepley 2076c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()` 2077c506a872SMatthew G. Knepley @*/ 2078c506a872SMatthew G. Knepley PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap) 2079c506a872SMatthew G. Knepley { 2080c506a872SMatthew G. Knepley PetscFunctionBegin; 2081c506a872SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2082c506a872SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 3); 2083c506a872SMatthew G. Knepley PetscTryMethod(dm, "DMPlexSetOverlap_C",(DM,DM,PetscInt),(dm,dmSrc,overlap)); 2084c506a872SMatthew G. Knepley PetscFunctionReturn(0); 2085c506a872SMatthew G. Knepley } 2086c506a872SMatthew G. Knepley 2087e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist) 2088e600fa54SMatthew G. Knepley { 2089e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 2090e600fa54SMatthew G. Knepley 2091e600fa54SMatthew G. Knepley PetscFunctionBegin; 2092e600fa54SMatthew G. Knepley mesh->distDefault = dist; 2093e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2094e600fa54SMatthew G. Knepley } 2095e600fa54SMatthew G. Knepley 2096e600fa54SMatthew G. Knepley /*@ 2097e600fa54SMatthew G. Knepley DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default 2098e600fa54SMatthew G. Knepley 2099e600fa54SMatthew G. Knepley Logically collective 2100e600fa54SMatthew G. Knepley 2101e600fa54SMatthew G. Knepley Input Parameters: 2102e600fa54SMatthew G. Knepley + dm - The DM 2103e600fa54SMatthew G. Knepley - dist - Flag for distribution 2104e600fa54SMatthew G. Knepley 2105e600fa54SMatthew G. Knepley Level: intermediate 2106e600fa54SMatthew G. Knepley 21079e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()` 2108e600fa54SMatthew G. Knepley @*/ 2109e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist) 2110e600fa54SMatthew G. Knepley { 2111e600fa54SMatthew G. Knepley PetscFunctionBegin; 2112e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2113e600fa54SMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, dist, 2); 2114cac4c232SBarry Smith PetscTryMethod(dm,"DMPlexDistributeSetDefault_C",(DM,PetscBool),(dm,dist)); 2115e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2116e600fa54SMatthew G. Knepley } 2117e600fa54SMatthew G. Knepley 2118e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist) 2119e600fa54SMatthew G. Knepley { 2120e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 2121e600fa54SMatthew G. Knepley 2122e600fa54SMatthew G. Knepley PetscFunctionBegin; 2123e600fa54SMatthew G. Knepley *dist = mesh->distDefault; 2124e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2125e600fa54SMatthew G. Knepley } 2126e600fa54SMatthew G. Knepley 2127e600fa54SMatthew G. Knepley /*@ 2128e600fa54SMatthew G. Knepley DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default 2129e600fa54SMatthew G. Knepley 2130e600fa54SMatthew G. Knepley Not collective 2131e600fa54SMatthew G. Knepley 2132e600fa54SMatthew G. Knepley Input Parameter: 2133e600fa54SMatthew G. Knepley . dm - The DM 2134e600fa54SMatthew G. Knepley 2135e600fa54SMatthew G. Knepley Output Parameter: 2136e600fa54SMatthew G. Knepley . dist - Flag for distribution 2137e600fa54SMatthew G. Knepley 2138e600fa54SMatthew G. Knepley Level: intermediate 2139e600fa54SMatthew G. Knepley 21409e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()` 2141e600fa54SMatthew G. Knepley @*/ 2142e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist) 2143e600fa54SMatthew G. Knepley { 2144e600fa54SMatthew G. Knepley PetscFunctionBegin; 2145e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2146e600fa54SMatthew G. Knepley PetscValidBoolPointer(dist, 2); 2147cac4c232SBarry Smith PetscUseMethod(dm,"DMPlexDistributeGetDefault_C",(DM,PetscBool*),(dm,dist)); 2148e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2149e600fa54SMatthew G. Knepley } 2150e600fa54SMatthew G. Knepley 21516462276dSToby Isaac /*@C 21526462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 21536462276dSToby Isaac root process of the original's communicator. 21546462276dSToby Isaac 2155d083f849SBarry Smith Collective on dm 215683655b49SVáclav Hapla 2157064ec1f3Sprj- Input Parameter: 21586462276dSToby Isaac . dm - the original DMPlex object 21596462276dSToby Isaac 21606462276dSToby Isaac Output Parameters: 2161a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2162a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 21636462276dSToby Isaac 21646462276dSToby Isaac Level: intermediate 21656462276dSToby Isaac 2166db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()` 21676462276dSToby Isaac @*/ 2168a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 21696462276dSToby Isaac { 21706462276dSToby Isaac MPI_Comm comm; 21716462276dSToby Isaac PetscMPIInt size; 21726462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 21736462276dSToby Isaac 21746462276dSToby Isaac PetscFunctionBegin; 21756462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2176064a246eSJacob Faibussowitsch PetscValidPointer(gatherMesh,3); 21770c86c063SLisandro Dalcin *gatherMesh = NULL; 2178a13df41bSStefano Zampini if (sf) *sf = NULL; 21796462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 21809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 21816462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 21829566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm,&oldPart)); 21839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldPart)); 21849566063dSJacob Faibussowitsch PetscCall(PetscPartitionerCreate(comm,&gatherPart)); 21859566063dSJacob Faibussowitsch PetscCall(PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER)); 21869566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm,gatherPart)); 21879566063dSJacob Faibussowitsch PetscCall(DMPlexDistribute(dm,0,sf,gatherMesh)); 2188a13df41bSStefano Zampini 21899566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm,oldPart)); 21909566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&gatherPart)); 21919566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&oldPart)); 21926462276dSToby Isaac PetscFunctionReturn(0); 21936462276dSToby Isaac } 21946462276dSToby Isaac 21956462276dSToby Isaac /*@C 21966462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 21976462276dSToby Isaac 2198d083f849SBarry Smith Collective on dm 219983655b49SVáclav Hapla 2200064ec1f3Sprj- Input Parameter: 22016462276dSToby Isaac . dm - the original DMPlex object 22026462276dSToby Isaac 22036462276dSToby Isaac Output Parameters: 2204a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2205a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 22066462276dSToby Isaac 22076462276dSToby Isaac Level: intermediate 22086462276dSToby Isaac 2209db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()` 22106462276dSToby Isaac @*/ 2211a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 22126462276dSToby Isaac { 22136462276dSToby Isaac MPI_Comm comm; 22146462276dSToby Isaac PetscMPIInt size, rank; 22156462276dSToby Isaac PetscInt pStart, pEnd, p; 22166462276dSToby Isaac PetscInt numPoints = -1; 2217a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 22186462276dSToby Isaac DM gatherDM, dmCoord; 22196462276dSToby Isaac PetscSFNode *points; 22206462276dSToby Isaac 22216462276dSToby Isaac PetscFunctionBegin; 22226462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2223064a246eSJacob Faibussowitsch PetscValidPointer(redundantMesh,3); 22240c86c063SLisandro Dalcin *redundantMesh = NULL; 22256462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 22269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 222768dbc166SMatthew G. Knepley if (size == 1) { 22289566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dm)); 222968dbc166SMatthew G. Knepley *redundantMesh = dm; 2230a13df41bSStefano Zampini if (sf) *sf = NULL; 223168dbc166SMatthew G. Knepley PetscFunctionReturn(0); 223268dbc166SMatthew G. Knepley } 22339566063dSJacob Faibussowitsch PetscCall(DMPlexGetGatherDM(dm,&gatherSF,&gatherDM)); 22346462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 22359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 22369566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(gatherDM,&pStart,&pEnd)); 22376462276dSToby Isaac numPoints = pEnd - pStart; 22389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numPoints,1,MPIU_INT,0,comm)); 22399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints,&points)); 22409566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,&migrationSF)); 22416462276dSToby Isaac for (p = 0; p < numPoints; p++) { 22426462276dSToby Isaac points[p].index = p; 22436462276dSToby Isaac points[p].rank = 0; 22446462276dSToby Isaac } 22459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER)); 22469566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, redundantMesh)); 22479566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh")); 22489566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh)); 22492e28cf0cSVaclav Hapla /* This is to express that all point are in overlap */ 22502e28cf0cSVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT)); 22519566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint)); 22529566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*redundantMesh, sfPoint)); 22539566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord)); 22549566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 22559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2256a13df41bSStefano Zampini if (sf) { 2257a13df41bSStefano Zampini PetscSF tsf; 2258a13df41bSStefano Zampini 22599566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(gatherSF,migrationSF,&tsf)); 22609566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf)); 22619566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tsf)); 2262a13df41bSStefano Zampini } 22639566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&migrationSF)); 22649566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&gatherSF)); 22659566063dSJacob Faibussowitsch PetscCall(DMDestroy(&gatherDM)); 22669566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *redundantMesh)); 22675de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh)); 22686462276dSToby Isaac PetscFunctionReturn(0); 22696462276dSToby Isaac } 22705fa78c88SVaclav Hapla 22715fa78c88SVaclav Hapla /*@ 22725fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 22735fa78c88SVaclav Hapla 22745fa78c88SVaclav Hapla Collective 22755fa78c88SVaclav Hapla 22765fa78c88SVaclav Hapla Input Parameter: 22775fa78c88SVaclav Hapla . dm - The DM object 22785fa78c88SVaclav Hapla 22795fa78c88SVaclav Hapla Output Parameter: 22805fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 22815fa78c88SVaclav Hapla 22825fa78c88SVaclav Hapla Level: intermediate 22835fa78c88SVaclav Hapla 22845fa78c88SVaclav Hapla Notes: 22855fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 22865fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 22875fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 22885fa78c88SVaclav Hapla 2289db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()` 22905fa78c88SVaclav Hapla @*/ 22915fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) 22925fa78c88SVaclav Hapla { 22935fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 22945fa78c88SVaclav Hapla MPI_Comm comm; 229535d70e31SStefano Zampini PetscMPIInt size; 22965fa78c88SVaclav Hapla 22975fa78c88SVaclav Hapla PetscFunctionBegin; 22985fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2299dadcf809SJacob Faibussowitsch PetscValidBoolPointer(distributed,2); 23009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 23019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 230235d70e31SStefano Zampini if (size == 1) { *distributed = PETSC_FALSE; PetscFunctionReturn(0); } 23039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 230435d70e31SStefano Zampini count = (pEnd - pStart) > 0 ? 1 : 0; 23059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm)); 23065fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 23075fa78c88SVaclav Hapla PetscFunctionReturn(0); 23085fa78c88SVaclav Hapla } 2309