xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision 76bd3646d776ac16fc835ea742fa097f15759704)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser()
203c1f0c11SLawrence Mitchell @*/
213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx)
223c1f0c11SLawrence Mitchell {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
393c1f0c11SLawrence Mitchell - user    - The user callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser()
453c1f0c11SLawrence Mitchell @*/
463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx)
473c1f0c11SLawrence Mitchell {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
678b0b4c70SToby Isaac @*/
685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
698b0b4c70SToby Isaac {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
758b0b4c70SToby Isaac   PetscFunctionReturn(0);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
908b0b4c70SToby Isaac @*/
915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
928b0b4c70SToby Isaac {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
975b317d89SToby Isaac   PetscValidIntPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
998b0b4c70SToby Isaac   PetscFunctionReturn(0);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
10370034214SMatthew G. Knepley {
10470034214SMatthew G. Knepley   const PetscInt *cone = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley   PetscErrorCode  ierr;
10770034214SMatthew G. Knepley 
10870034214SMatthew G. Knepley   PetscFunctionBeginHot;
10970034214SMatthew G. Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
11070034214SMatthew G. Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
1114b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1124b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
11370034214SMatthew G. Knepley     const PetscInt *support = NULL;
11470034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11570034214SMatthew G. Knepley 
1164b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr);
1174b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr);
11870034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
119527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) {
12070034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12170034214SMatthew G. Knepley       }
12270034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
12370034214SMatthew G. Knepley     }
12470034214SMatthew G. Knepley   }
12570034214SMatthew G. Knepley   *adjSize = numAdj;
12670034214SMatthew G. Knepley   PetscFunctionReturn(0);
12770034214SMatthew G. Knepley }
12870034214SMatthew G. Knepley 
12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
13070034214SMatthew G. Knepley {
13170034214SMatthew G. Knepley   const PetscInt *support = NULL;
13270034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
13370034214SMatthew G. Knepley   PetscErrorCode  ierr;
13470034214SMatthew G. Knepley 
13570034214SMatthew G. Knepley   PetscFunctionBeginHot;
13670034214SMatthew G. Knepley   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
13770034214SMatthew G. Knepley   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
1384b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1394b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
14070034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
14170034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14270034214SMatthew G. Knepley 
1434b6b44bdSMatthew G. Knepley     ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr);
1444b6b44bdSMatthew G. Knepley     ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr);
14570034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
146527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) {
14770034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14870034214SMatthew G. Knepley       }
14970034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
15070034214SMatthew G. Knepley     }
15170034214SMatthew G. Knepley   }
15270034214SMatthew G. Knepley   *adjSize = numAdj;
15370034214SMatthew G. Knepley   PetscFunctionReturn(0);
15470034214SMatthew G. Knepley }
15570034214SMatthew G. Knepley 
15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
15770034214SMatthew G. Knepley {
15870034214SMatthew G. Knepley   PetscInt      *star = NULL;
15970034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
16070034214SMatthew G. Knepley   PetscErrorCode ierr;
16170034214SMatthew G. Knepley 
16270034214SMatthew G. Knepley   PetscFunctionBeginHot;
16370034214SMatthew G. Knepley   ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
16470034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
16570034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16670034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16770034214SMatthew G. Knepley 
16870034214SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
16970034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
170527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) {
17170034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
17270034214SMatthew G. Knepley       }
17370034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
17470034214SMatthew G. Knepley     }
17570034214SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
17670034214SMatthew G. Knepley   }
17770034214SMatthew G. Knepley   ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
17870034214SMatthew G. Knepley   *adjSize = numAdj;
17970034214SMatthew G. Knepley   PetscFunctionReturn(0);
18070034214SMatthew G. Knepley }
18170034214SMatthew G. Knepley 
1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
18370034214SMatthew G. Knepley {
18479bad331SMatthew G. Knepley   static PetscInt asiz = 0;
1858b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
1868b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
1878b0b4c70SToby Isaac   PetscInt maxAdjSize;
1888b0b4c70SToby Isaac   PetscSection aSec = NULL;
1898b0b4c70SToby Isaac   IS aIS = NULL;
1908b0b4c70SToby Isaac   const PetscInt *anchors;
1913c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
19270034214SMatthew G. Knepley   PetscErrorCode  ierr;
19370034214SMatthew G. Knepley 
19470034214SMatthew G. Knepley   PetscFunctionBeginHot;
1955b317d89SToby Isaac   if (useAnchors) {
196a17985deSToby Isaac     ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr);
1978b0b4c70SToby Isaac     if (aSec) {
1988b0b4c70SToby Isaac       ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr);
19924c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
2008b0b4c70SToby Isaac       ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr);
2018b0b4c70SToby Isaac       ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr);
2028b0b4c70SToby Isaac     }
2038b0b4c70SToby Isaac   }
20479bad331SMatthew G. Knepley   if (!*adj) {
20524c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20679bad331SMatthew G. Knepley 
20724c766afSToby Isaac     ierr  = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr);
20879bad331SMatthew G. Knepley     ierr  = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
209412e9a14SMatthew G. Knepley     depth = PetscMax(depth, -depth);
21024c766afSToby Isaac     ierr  = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr);
21124c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
21224c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
21324c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2148b0b4c70SToby Isaac     asiz *= maxAnchors;
21524c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
21679bad331SMatthew G. Knepley     ierr  = PetscMalloc1(asiz,adj);CHKERRQ(ierr);
21779bad331SMatthew G. Knepley   }
21879bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2198b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2203c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
22162f17a49SStefano Zampini     ierr = (*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr);
2223c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
22379bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr);
22470034214SMatthew G. Knepley   } else if (useCone) {
22579bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22670034214SMatthew G. Knepley   } else {
22779bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22870034214SMatthew G. Knepley   }
2295b317d89SToby Isaac   if (useAnchors && aSec) {
2308b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
2318b0b4c70SToby Isaac     PetscInt numAdj = origSize;
2328b0b4c70SToby Isaac     PetscInt i = 0, j;
2338b0b4c70SToby Isaac     PetscInt *orig = *adj;
2348b0b4c70SToby Isaac 
2358b0b4c70SToby Isaac     while (i < origSize) {
2368b0b4c70SToby Isaac       PetscInt p = orig[i];
2378b0b4c70SToby Isaac       PetscInt aDof = 0;
2388b0b4c70SToby Isaac 
2398b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
2408b0b4c70SToby Isaac         ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr);
2418b0b4c70SToby Isaac       }
2428b0b4c70SToby Isaac       if (aDof) {
2438b0b4c70SToby Isaac         PetscInt aOff;
2448b0b4c70SToby Isaac         PetscInt s, q;
2458b0b4c70SToby Isaac 
2468b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
2478b0b4c70SToby Isaac           orig[j - 1] = orig[j];
2488b0b4c70SToby Isaac         }
2498b0b4c70SToby Isaac         origSize--;
2508b0b4c70SToby Isaac         numAdj--;
2518b0b4c70SToby Isaac         ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr);
2528b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
253527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) {
2548b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
2558b0b4c70SToby Isaac           }
2568b0b4c70SToby Isaac           if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
2578b0b4c70SToby Isaac         }
2588b0b4c70SToby Isaac       }
2598b0b4c70SToby Isaac       else {
2608b0b4c70SToby Isaac         i++;
2618b0b4c70SToby Isaac       }
2628b0b4c70SToby Isaac     }
2638b0b4c70SToby Isaac     *adjSize = numAdj;
2648b0b4c70SToby Isaac     ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr);
2658b0b4c70SToby Isaac   }
26670034214SMatthew G. Knepley   PetscFunctionReturn(0);
26770034214SMatthew G. Knepley }
26870034214SMatthew G. Knepley 
26970034214SMatthew G. Knepley /*@
27070034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
27170034214SMatthew G. Knepley 
27270034214SMatthew G. Knepley   Input Parameters:
27370034214SMatthew G. Knepley + dm - The DM object
27470034214SMatthew G. Knepley . p  - The point
27570034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE
27670034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize
27770034214SMatthew G. Knepley 
27870034214SMatthew G. Knepley   Output Parameters:
27970034214SMatthew G. Knepley + adjSize - The number of adjacent points
28070034214SMatthew G. Knepley - adj - The adjacent points
28170034214SMatthew G. Knepley 
28270034214SMatthew G. Knepley   Level: advanced
28370034214SMatthew G. Knepley 
28495452b02SPatrick Sanan   Notes:
28595452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
28670034214SMatthew G. Knepley 
287b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator()
28870034214SMatthew G. Knepley @*/
28970034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
29070034214SMatthew G. Knepley {
2911cf84007SMatthew G. Knepley   PetscBool      useCone, useClosure, useAnchors;
29270034214SMatthew G. Knepley   PetscErrorCode ierr;
29370034214SMatthew G. Knepley 
29470034214SMatthew G. Knepley   PetscFunctionBeginHot;
29570034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29670034214SMatthew G. Knepley   PetscValidPointer(adjSize,3);
29770034214SMatthew G. Knepley   PetscValidPointer(adj,4);
298b0441da4SMatthew G. Knepley   ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
2991cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
3001cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr);
30170034214SMatthew G. Knepley   PetscFunctionReturn(0);
30270034214SMatthew G. Knepley }
30308633170SToby Isaac 
304b0a623aaSMatthew G. Knepley /*@
305b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
306b0a623aaSMatthew G. Knepley 
307d083f849SBarry Smith   Collective on dm
308b0a623aaSMatthew G. Knepley 
309b0a623aaSMatthew G. Knepley   Input Parameters:
310b0a623aaSMatthew G. Knepley + dm      - The DM
311b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity
312b0a623aaSMatthew G. Knepley 
313b0a623aaSMatthew G. Knepley   Output Parameters:
314b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
315b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
316b0a623aaSMatthew G. Knepley 
317b0a623aaSMatthew G. Knepley   Level: developer
318b0a623aaSMatthew G. Knepley 
319b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF()
320b0a623aaSMatthew G. Knepley @*/
321b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
322b0a623aaSMatthew G. Knepley {
323b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
324b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
325b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
326b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
327b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
328b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
329b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3309852e123SBarry Smith   PetscMPIInt        size, proc, rank;
331b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
332b0a623aaSMatthew G. Knepley 
333b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
334b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
335b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
336b0a623aaSMatthew G. Knepley   if (processRanks) {PetscValidPointer(processRanks, 3);}
337b0a623aaSMatthew G. Knepley   if (sfProcess)    {PetscValidPointer(sfProcess, 4);}
3389852e123SBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
339b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
340b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr);
3419852e123SBarry Smith   ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr);
3429852e123SBarry Smith   ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr);
343b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
344b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr);
345b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr);
346b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
347b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
348b0a623aaSMatthew G. Knepley 
349b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr);
350b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr);
351302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
352b0a623aaSMatthew G. Knepley   }
353b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr);
354b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
355b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr);
356b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr);
357b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
358b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
359b0a623aaSMatthew G. Knepley 
360b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr);
361b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr);
362302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
363b0a623aaSMatthew G. Knepley   }
364b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr);
365b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
366b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
367b0a623aaSMatthew G. Knepley   /* Calculate edges */
368b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3699852e123SBarry Smith   for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
370b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr);
371b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr);
372b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr);
3739852e123SBarry Smith   for(proc = 0, n = 0; proc < size; ++proc) {
374b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
375b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
376b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
377b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
378b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
379b0a623aaSMatthew G. Knepley       ++n;
380b0a623aaSMatthew G. Knepley     }
381b0a623aaSMatthew G. Knepley   }
382b0a623aaSMatthew G. Knepley   ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr);
383b0a623aaSMatthew G. Knepley   if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);}
384b0a623aaSMatthew G. Knepley   else              {ierr = PetscFree(ranksNew);CHKERRQ(ierr);}
385b0a623aaSMatthew G. Knepley   if (sfProcess) {
386b0a623aaSMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr);
387b0a623aaSMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr);
388b0a623aaSMatthew G. Knepley     ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr);
3899852e123SBarry Smith     ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
390b0a623aaSMatthew G. Knepley   }
391b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
392b0a623aaSMatthew G. Knepley }
393b0a623aaSMatthew G. Knepley 
394b0a623aaSMatthew G. Knepley /*@
395b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
396b0a623aaSMatthew G. Knepley 
397d083f849SBarry Smith   Collective on dm
398b0a623aaSMatthew G. Knepley 
399b0a623aaSMatthew G. Knepley   Input Parameter:
400b0a623aaSMatthew G. Knepley . dm - The DM
401b0a623aaSMatthew G. Knepley 
402b0a623aaSMatthew G. Knepley   Output Parameters:
403b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
404b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
405b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
406b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
407b0a623aaSMatthew G. Knepley 
408b0a623aaSMatthew G. Knepley   Level: developer
409b0a623aaSMatthew G. Knepley 
410dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistribute(), DMPlexDistributeOverlap()
411b0a623aaSMatthew G. Knepley @*/
412b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
413b0a623aaSMatthew G. Knepley {
414b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
415b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
416b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
417b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
418b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
419b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
420b0a623aaSMatthew G. Knepley   PetscErrorCode  ierr;
421b0a623aaSMatthew G. Knepley 
422b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
423b0a623aaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
424b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
425b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
426b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
427b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
428b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr);
429b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr);
430b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr);
431b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr);
432b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);}
433b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr);
434b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
435b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr);
436b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr);
437b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(nedges,  &remoterank);CHKERRQ(ierr);
438b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
439b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
440b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
441b0a623aaSMatthew G. Knepley   ierr = PetscFree(myrank);CHKERRQ(ierr);
442b0a623aaSMatthew G. Knepley   ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr);
443b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
444b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr);
445b0a623aaSMatthew G. Knepley   ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr);
446b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
447b0a623aaSMatthew G. Knepley }
448b0a623aaSMatthew G. Knepley 
449278397a0SMatthew G. Knepley /*@C
450dccdeccaSVaclav Hapla   DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF.
451b0a623aaSMatthew G. Knepley 
452d083f849SBarry Smith   Collective on dm
453b0a623aaSMatthew G. Knepley 
454b0a623aaSMatthew G. Knepley   Input Parameters:
455b0a623aaSMatthew G. Knepley + dm          - The DM
45624d039d7SMichael Lange . levels      - Number of overlap levels
457b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
458b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
459b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
460b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
461b0a623aaSMatthew G. Knepley 
462064ec1f3Sprj-   Output Parameter:
463b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
464b0a623aaSMatthew G. Knepley 
465b0a623aaSMatthew G. Knepley   Level: developer
466b0a623aaSMatthew G. Knepley 
4671fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute()
468b0a623aaSMatthew G. Knepley @*/
469dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
470b0a623aaSMatthew G. Knepley {
471e540f424SMichael Lange   MPI_Comm           comm;
472b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
473874ddda9SLisandro Dalcin   PetscSF            sfPoint;
474b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
475b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4761fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
477b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4781fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4799852e123SBarry Smith   PetscMPIInt        rank, size;
48031bc6364SLisandro Dalcin   PetscBool          flg;
481b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
482b0a623aaSMatthew G. Knepley 
483b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4846ba1a4c7SVaclav Hapla   *ovLabel = NULL;
485e540f424SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
4869852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
487e540f424SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
4886ba1a4c7SVaclav Hapla   if (size == 1) PetscFunctionReturn(0);
489b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
490b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
491b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr);
492b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr);
493d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr);
494b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
495b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
496b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
497b0a623aaSMatthew G. Knepley 
498df20756eSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr);
499b0a623aaSMatthew G. Knepley     for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);}
500b0a623aaSMatthew G. Knepley   }
501b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr);
502b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr);
503b0a623aaSMatthew G. Knepley   /* Handle roots */
504b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
505b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
506b0a623aaSMatthew G. Knepley 
507b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
508b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
509b0a623aaSMatthew G. Knepley       ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr);
510b0a623aaSMatthew G. Knepley       if (neighbors) {
511b0a623aaSMatthew G. Knepley         ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr);
512b0a623aaSMatthew G. Knepley         ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
513b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
514b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
515b0a623aaSMatthew G. Knepley 
516b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
517b0a623aaSMatthew G. Knepley           for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
518b0a623aaSMatthew G. Knepley         }
519b0a623aaSMatthew G. Knepley       }
520b0a623aaSMatthew G. Knepley     }
521b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
522b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr);
523b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
524b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr);
525b0a623aaSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
526b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
527b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
528b0a623aaSMatthew G. Knepley 
529b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
530b0a623aaSMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
531b0a623aaSMatthew G. Knepley     }
532b0a623aaSMatthew G. Knepley   }
533b0a623aaSMatthew G. Knepley   ierr = PetscFree(adj);CHKERRQ(ierr);
534b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr);
535b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr);
53624d039d7SMichael Lange   /* Add additional overlap levels */
537be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
538be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
539be200f8dSMichael Lange     ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr);
540be200f8dSMichael Lange     /* Add next level of point donations to the label */
541be200f8dSMichael Lange     ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr);
542be200f8dSMichael Lange   }
54326a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5445abbe4feSMichael Lange   ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr);
545c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr);
546e540f424SMichael Lange   if (flg) {
547825f8a23SLisandro Dalcin     PetscViewer viewer;
548825f8a23SLisandro Dalcin     ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr);
549825f8a23SLisandro Dalcin     ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr);
550b0a623aaSMatthew G. Knepley   }
551874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
552d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr);
553874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr);
554a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
555a9f1d5b2SMichael Lange   for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
556e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
557a9f1d5b2SMichael Lange     ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr);
558a9f1d5b2SMichael Lange     ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr);
559e540f424SMichael Lange   }
560e540f424SMichael Lange   /* Clean up */
5611fd9873aSMichael Lange   ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr);
562b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
563b0a623aaSMatthew G. Knepley }
56470034214SMatthew G. Knepley 
56524cc2ca5SMatthew G. Knepley /*@C
56624cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
56724cc2ca5SMatthew G. Knepley 
568d083f849SBarry Smith   Collective on dm
56924cc2ca5SMatthew G. Knepley 
57024cc2ca5SMatthew G. Knepley   Input Parameters:
57124cc2ca5SMatthew G. Knepley + dm          - The DM
57224cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
57324cc2ca5SMatthew G. Knepley 
574064ec1f3Sprj-   Output Parameter:
575a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
57624cc2ca5SMatthew G. Knepley 
57724cc2ca5SMatthew G. Knepley   Level: developer
57824cc2ca5SMatthew G. Knepley 
579dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistributeOverlap(), DMPlexDistribute()
58024cc2ca5SMatthew G. Knepley @*/
58146f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
58246f9b1c3SMichael Lange {
58346f9b1c3SMichael Lange   MPI_Comm           comm;
5849852e123SBarry Smith   PetscMPIInt        rank, size;
58546f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
58646f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
58746f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
58846f9b1c3SMichael Lange   PetscSFNode       *iremote;
58946f9b1c3SMichael Lange   PetscSF            pointSF;
59046f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
59146f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
59246f9b1c3SMichael Lange   PetscErrorCode     ierr;
59346f9b1c3SMichael Lange 
59446f9b1c3SMichael Lange   PetscFunctionBegin;
59546f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
59646f9b1c3SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
59746f9b1c3SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
5989852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
59946f9b1c3SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
60046f9b1c3SMichael Lange 
60146f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
60246f9b1c3SMichael Lange   ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr);
60346f9b1c3SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
60446f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
60546f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
60646f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
60746f9b1c3SMichael Lange   }
60846f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
60946f9b1c3SMichael Lange   ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
61046f9b1c3SMichael Lange   ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
61146f9b1c3SMichael Lange 
6122d4ee042Sprj-   /* Count received points in each stratum and compute the internal strata shift */
61346f9b1c3SMichael Lange   ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr);
61446f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
61546f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
61646f9b1c3SMichael Lange   depthShift[dim] = 0;
61746f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
61846f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
61946f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
62046f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
62146f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
62246f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
62346f9b1c3SMichael Lange   }
62446f9b1c3SMichael Lange 
62546f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
62646f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
62746f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
62809b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr);
62909b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr);
63046f9b1c3SMichael Lange   /* First map local points to themselves */
63146f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
63246f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
63346f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
63446f9b1c3SMichael Lange       point = p + depthShift[d];
63546f9b1c3SMichael Lange       ilocal[point] = point;
63646f9b1c3SMichael Lange       iremote[point].index = p;
63746f9b1c3SMichael Lange       iremote[point].rank = rank;
63846f9b1c3SMichael Lange       depthIdx[d]++;
63946f9b1c3SMichael Lange     }
64046f9b1c3SMichael Lange   }
64146f9b1c3SMichael Lange 
64246f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
64346f9b1c3SMichael Lange   ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr);
64446f9b1c3SMichael Lange   ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr);
64546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
64646f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
64746f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
64846f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
64946f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
65046f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
65146f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
65246f9b1c3SMichael Lange       }
65346f9b1c3SMichael Lange     }
65446f9b1c3SMichael Lange   }
65546f9b1c3SMichael Lange 
65646f9b1c3SMichael Lange   /* Now add the incoming overlap points */
65746f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
65846f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
65946f9b1c3SMichael Lange     ilocal[point] = point;
66046f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
66146f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
66246f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
66346f9b1c3SMichael Lange   }
66415fff7beSMatthew G. Knepley   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
66546f9b1c3SMichael Lange 
66646f9b1c3SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
66746f9b1c3SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr);
66846f9b1c3SMichael Lange   ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr);
66946f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
67046f9b1c3SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
67146f9b1c3SMichael Lange 
67246f9b1c3SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
67370034214SMatthew G. Knepley   PetscFunctionReturn(0);
67470034214SMatthew G. Knepley }
67570034214SMatthew G. Knepley 
676a9f1d5b2SMichael Lange /*@
677f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
678a9f1d5b2SMichael Lange 
679064ec1f3Sprj-   Input Parameters:
680a9f1d5b2SMichael Lange + dm          - The DM
681a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
682a9f1d5b2SMichael Lange 
683a9f1d5b2SMichael Lange   Output Parameter:
684a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
685a9f1d5b2SMichael Lange 
686412e9a14SMatthew G. Knepley   Note:
687412e9a14SMatthew G. Knepley   This lexicographically sorts by (depth, cellType)
688412e9a14SMatthew G. Knepley 
689a9f1d5b2SMichael Lange   Level: developer
690a9f1d5b2SMichael Lange 
691a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap()
692a9f1d5b2SMichael Lange @*/
693a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
694a9f1d5b2SMichael Lange {
695a9f1d5b2SMichael Lange   MPI_Comm           comm;
6969852e123SBarry Smith   PetscMPIInt        rank, size;
697412e9a14SMatthew G. Knepley   PetscInt           d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves;
698412e9a14SMatthew G. Knepley   PetscSFNode       *pointDepths, *remoteDepths;
699412e9a14SMatthew G. Knepley   PetscInt          *ilocal;
700a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
701412e9a14SMatthew G. Knepley   PetscInt          *ctRecv,    *ctShift,    *ctIdx;
702a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
703a9f1d5b2SMichael Lange   PetscErrorCode     ierr;
704a9f1d5b2SMichael Lange 
705a9f1d5b2SMichael Lange   PetscFunctionBegin;
706a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
707a9f1d5b2SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
708a9f1d5b2SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
7099852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
7107fab53ddSMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr);
711412e9a14SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
712b2566f29SBarry Smith   ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
7137fab53ddSMatthew G. Knepley   if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth);
71430b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
715a9f1d5b2SMichael Lange 
716a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
717a9f1d5b2SMichael Lange   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr);
718a9f1d5b2SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
7197fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
720a9f1d5b2SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
721f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
722412e9a14SMatthew G. Knepley       DMPolytopeType ct;
723f0e73a3dSToby Isaac 
724412e9a14SMatthew G. Knepley       ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr);
725412e9a14SMatthew G. Knepley       pointDepths[p].index = d;
726412e9a14SMatthew G. Knepley       pointDepths[p].rank  = ct;
727f0e73a3dSToby Isaac     }
728412e9a14SMatthew G. Knepley   }
729412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;}
730412e9a14SMatthew G. Knepley   ierr = PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths);CHKERRQ(ierr);
731412e9a14SMatthew G. Knepley   ierr = PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths);CHKERRQ(ierr);
732412e9a14SMatthew G. Knepley   /* Count received points in each stratum and compute the internal strata shift */
733412e9a14SMatthew G. Knepley   ierr = PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx);CHKERRQ(ierr);
734412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
735412e9a14SMatthew G. Knepley     if (remoteDepths[p].rank < 0) {
736412e9a14SMatthew G. Knepley       ++depthRecv[remoteDepths[p].index];
737412e9a14SMatthew G. Knepley     } else {
738412e9a14SMatthew G. Knepley       ++ctRecv[remoteDepths[p].rank];
739412e9a14SMatthew G. Knepley     }
740412e9a14SMatthew G. Knepley   }
741412e9a14SMatthew G. Knepley   {
742412e9a14SMatthew G. Knepley     PetscInt depths[4], dims[4], shift = 0, i, c;
743412e9a14SMatthew G. Knepley 
744412e9a14SMatthew G. Knepley     /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) */
745412e9a14SMatthew G. Knepley     depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1;
746412e9a14SMatthew G. Knepley     dims[0]   = dim;   dims[1]   = 0; dims[2]   = dim-1;   dims[3]   = 1;
747412e9a14SMatthew G. Knepley     for (i = 0; i <= depth; ++i) {
748412e9a14SMatthew G. Knepley       const PetscInt dep = depths[i];
749412e9a14SMatthew G. Knepley       const PetscInt dim = dims[i];
750412e9a14SMatthew G. Knepley 
751412e9a14SMatthew G. Knepley       for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
752412e9a14SMatthew G. Knepley         if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && c == DM_POLYTOPE_FV_GHOST)) continue;
753412e9a14SMatthew G. Knepley         ctShift[c] = shift;
754412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
755412e9a14SMatthew G. Knepley       }
756412e9a14SMatthew G. Knepley       depthShift[dep] = shift;
757412e9a14SMatthew G. Knepley       shift          += depthRecv[dep];
758412e9a14SMatthew G. Knepley     }
759412e9a14SMatthew G. Knepley     for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
760412e9a14SMatthew G. Knepley       const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c);
761412e9a14SMatthew G. Knepley 
762412e9a14SMatthew G. Knepley       if ((ctDim < 0 || ctDim > dim) && c != DM_POLYTOPE_FV_GHOST) {
763412e9a14SMatthew G. Knepley         ctShift[c] = shift;
764412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
765412e9a14SMatthew G. Knepley       }
766412e9a14SMatthew G. Knepley     }
767412e9a14SMatthew G. Knepley   }
768a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
769a9f1d5b2SMichael Lange   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
7707fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
771412e9a14SMatthew G. Knepley     const PetscInt       dep = remoteDepths[p].index;
772412e9a14SMatthew G. Knepley     const DMPolytopeType ct  = (DMPolytopeType) remoteDepths[p].rank;
7737fab53ddSMatthew G. Knepley 
774412e9a14SMatthew G. Knepley     if ((PetscInt) ct < 0) {
7757fab53ddSMatthew G. Knepley       ilocal[p] = depthShift[dep] + depthIdx[dep];
776412e9a14SMatthew G. Knepley       ++depthIdx[dep];
777412e9a14SMatthew G. Knepley     } else {
778412e9a14SMatthew G. Knepley       ilocal[p] = ctShift[ct] + ctIdx[ct];
779412e9a14SMatthew G. Knepley       ++ctIdx[ct];
780412e9a14SMatthew G. Knepley     }
781a9f1d5b2SMichael Lange   }
782a9f1d5b2SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
783a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr);
784a9f1d5b2SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr);
785a9f1d5b2SMichael Lange   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
786412e9a14SMatthew G. Knepley   ierr = PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx);CHKERRQ(ierr);
78730b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
788a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
789a9f1d5b2SMichael Lange }
790a9f1d5b2SMichael Lange 
79170034214SMatthew G. Knepley /*@
79270034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
79370034214SMatthew G. Knepley 
794d083f849SBarry Smith   Collective on dm
79570034214SMatthew G. Knepley 
79670034214SMatthew G. Knepley   Input Parameters:
79770034214SMatthew G. Knepley + dm - The DMPlex object
79870034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
79970034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
800cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
80170034214SMatthew G. Knepley 
80270034214SMatthew G. Knepley   Output Parameters:
80370034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
804cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
80570034214SMatthew G. Knepley 
80670034214SMatthew G. Knepley   Level: developer
80770034214SMatthew G. Knepley 
80870034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData()
80970034214SMatthew G. Knepley @*/
81070034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
81170034214SMatthew G. Knepley {
81270034214SMatthew G. Knepley   PetscSF        fieldSF;
81370034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
81470034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
81570034214SMatthew G. Knepley   PetscErrorCode ierr;
81670034214SMatthew G. Knepley 
81770034214SMatthew G. Knepley   PetscFunctionBegin;
81870034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
81970034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
82070034214SMatthew G. Knepley 
82170034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
82270034214SMatthew G. Knepley   ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr);
82370034214SMatthew G. Knepley   ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr);
82470034214SMatthew G. Knepley 
82570034214SMatthew G. Knepley   ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr);
82670034214SMatthew G. Knepley   ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr);
82770034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8288a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
82970034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
83070034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
83170034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
83270034214SMatthew G. Knepley   ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr);
83370034214SMatthew G. Knepley   ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr);
83470034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
83570034214SMatthew G. Knepley   PetscFunctionReturn(0);
83670034214SMatthew G. Knepley }
83770034214SMatthew G. Knepley 
83870034214SMatthew G. Knepley /*@
83970034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
84070034214SMatthew G. Knepley 
841d083f849SBarry Smith   Collective on dm
84270034214SMatthew G. Knepley 
84370034214SMatthew G. Knepley   Input Parameters:
84470034214SMatthew G. Knepley + dm - The DMPlex object
84570034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
84670034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
84770034214SMatthew G. Knepley - originalIS - The existing data
84870034214SMatthew G. Knepley 
84970034214SMatthew G. Knepley   Output Parameters:
85070034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
85170034214SMatthew G. Knepley - newIS - The new data
85270034214SMatthew G. Knepley 
85370034214SMatthew G. Knepley   Level: developer
85470034214SMatthew G. Knepley 
85570034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData()
85670034214SMatthew G. Knepley @*/
85770034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
85870034214SMatthew G. Knepley {
85970034214SMatthew G. Knepley   PetscSF         fieldSF;
86070034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
86170034214SMatthew G. Knepley   const PetscInt *originalValues;
86270034214SMatthew G. Knepley   PetscErrorCode  ierr;
86370034214SMatthew G. Knepley 
86470034214SMatthew G. Knepley   PetscFunctionBegin;
86570034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
86670034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
86770034214SMatthew G. Knepley 
86870034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
869854ce69bSBarry Smith   ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr);
87070034214SMatthew G. Knepley 
87170034214SMatthew G. Knepley   ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr);
87270034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8738a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
874aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
875aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
87670034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
87770034214SMatthew G. Knepley   ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr);
87870034214SMatthew G. Knepley   ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr);
87970034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
88070034214SMatthew G. Knepley   PetscFunctionReturn(0);
88170034214SMatthew G. Knepley }
88270034214SMatthew G. Knepley 
88370034214SMatthew G. Knepley /*@
88470034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
88570034214SMatthew G. Knepley 
886d083f849SBarry Smith   Collective on dm
88770034214SMatthew G. Knepley 
88870034214SMatthew G. Knepley   Input Parameters:
88970034214SMatthew G. Knepley + dm - The DMPlex object
89070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
89170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
89270034214SMatthew G. Knepley . datatype - The type of data
89370034214SMatthew G. Knepley - originalData - The existing data
89470034214SMatthew G. Knepley 
89570034214SMatthew G. Knepley   Output Parameters:
89670034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
89770034214SMatthew G. Knepley - newData - The new data
89870034214SMatthew G. Knepley 
89970034214SMatthew G. Knepley   Level: developer
90070034214SMatthew G. Knepley 
90170034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField()
90270034214SMatthew G. Knepley @*/
90370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
90470034214SMatthew G. Knepley {
90570034214SMatthew G. Knepley   PetscSF        fieldSF;
90670034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
90770034214SMatthew G. Knepley   PetscMPIInt    dataSize;
90870034214SMatthew G. Knepley   PetscErrorCode ierr;
90970034214SMatthew G. Knepley 
91070034214SMatthew G. Knepley   PetscFunctionBegin;
91170034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
91270034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
91370034214SMatthew G. Knepley 
91470034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
91570034214SMatthew G. Knepley   ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr);
91670034214SMatthew G. Knepley   ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr);
91770034214SMatthew G. Knepley 
91870034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
9198a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
92070034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
92170034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
92270034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
92370034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
92470034214SMatthew G. Knepley   PetscFunctionReturn(0);
92570034214SMatthew G. Knepley }
92670034214SMatthew G. Knepley 
92724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
928cc71bff1SMichael Lange {
929cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
930cc71bff1SMichael Lange   MPI_Comm               comm;
931cc71bff1SMichael Lange   PetscSF                coneSF;
932cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
933ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
934cc71bff1SMichael Lange   PetscBool              flg;
935cc71bff1SMichael Lange   PetscErrorCode         ierr;
936cc71bff1SMichael Lange 
937cc71bff1SMichael Lange   PetscFunctionBegin;
938cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9390c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
9400c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
941cc71bff1SMichael Lange   /* Distribute cone section */
942cc71bff1SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
943cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr);
944cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr);
945cc71bff1SMichael Lange   ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr);
946cc71bff1SMichael Lange   ierr = DMSetUp(dmParallel);CHKERRQ(ierr);
947cc71bff1SMichael Lange   {
948cc71bff1SMichael Lange     PetscInt pStart, pEnd, p;
949cc71bff1SMichael Lange 
950cc71bff1SMichael Lange     ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr);
951cc71bff1SMichael Lange     for (p = pStart; p < pEnd; ++p) {
952cc71bff1SMichael Lange       PetscInt coneSize;
953cc71bff1SMichael Lange       ierr               = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr);
954cc71bff1SMichael Lange       pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize);
955cc71bff1SMichael Lange     }
956cc71bff1SMichael Lange   }
957cc71bff1SMichael Lange   /* Communicate and renumber cones */
958cc71bff1SMichael Lange   ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr);
9598a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
960cc71bff1SMichael Lange   ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr);
961ac04eaf7SToby Isaac   if (original) {
962ac04eaf7SToby Isaac     PetscInt numCones;
963ac04eaf7SToby Isaac 
964367003a6SStefano Zampini     ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr);
965367003a6SStefano Zampini     ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr);
966ac04eaf7SToby Isaac     ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr);
967367003a6SStefano Zampini   } else {
968ac04eaf7SToby Isaac     globCones = cones;
969ac04eaf7SToby Isaac   }
970cc71bff1SMichael Lange   ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr);
971ac04eaf7SToby Isaac   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
972ac04eaf7SToby Isaac   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
973ac04eaf7SToby Isaac   if (original) {
974ac04eaf7SToby Isaac     ierr = PetscFree(globCones);CHKERRQ(ierr);
975ac04eaf7SToby Isaac   }
976cc71bff1SMichael Lange   ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr);
977cc71bff1SMichael Lange   ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr);
978*76bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
9793533c52bSMatthew G. Knepley     PetscInt  p;
9803533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
9813533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
982367003a6SStefano Zampini       if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);}
9833533c52bSMatthew G. Knepley     }
9843533c52bSMatthew G. Knepley     if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
9853533c52bSMatthew G. Knepley   }
986c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr);
987cc71bff1SMichael Lange   if (flg) {
988cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr);
989a8c5bd36SStefano Zampini     ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
990cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr);
991a8c5bd36SStefano Zampini     ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
992cc71bff1SMichael Lange     ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr);
993cc71bff1SMichael Lange   }
994cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr);
995cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr);
996cc71bff1SMichael Lange   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
997cc71bff1SMichael Lange   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
998cc71bff1SMichael Lange   ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr);
999cc71bff1SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
1000eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
1001cc71bff1SMichael Lange   {
1002cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1003cc71bff1SMichael Lange 
1004cc71bff1SMichael Lange     ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr);
1005cc71bff1SMichael Lange     ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr);
1006cc71bff1SMichael Lange   }
1007cc71bff1SMichael Lange   ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr);
1008cc71bff1SMichael Lange   ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr);
10091cf84007SMatthew G. Knepley   {
10101cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
10111cf84007SMatthew G. Knepley 
1012b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1013b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
10141cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
10151cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
10161cf84007SMatthew G. Knepley   }
1017cc71bff1SMichael Lange   PetscFunctionReturn(0);
1018cc71bff1SMichael Lange }
1019cc71bff1SMichael Lange 
102024cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
10210df0e737SMichael Lange {
10220df0e737SMichael Lange   MPI_Comm         comm;
10230df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
10240df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
10250df0e737SMichael Lange   PetscInt         bs;
102690b157c4SStefano Zampini   PetscBool        isper;
10270df0e737SMichael Lange   const char      *name;
10280df0e737SMichael Lange   const PetscReal *maxCell, *L;
10295dc8c3f7SMatthew G. Knepley   const DMBoundaryType *bd;
10300df0e737SMichael Lange   PetscErrorCode   ierr;
10310df0e737SMichael Lange 
10320df0e737SMichael Lange   PetscFunctionBegin;
10330df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10340c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10350df0e737SMichael Lange 
10360df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10370df0e737SMichael Lange   ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr);
10380df0e737SMichael Lange   ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr);
10390df0e737SMichael Lange   ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr);
10400df0e737SMichael Lange   if (originalCoordinates) {
10418b9ced59SLisandro Dalcin     ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr);
10420df0e737SMichael Lange     ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr);
10430df0e737SMichael Lange     ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr);
10440df0e737SMichael Lange 
10450df0e737SMichael Lange     ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr);
10460df0e737SMichael Lange     ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr);
10470df0e737SMichael Lange     ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr);
10480df0e737SMichael Lange     ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr);
10490df0e737SMichael Lange     ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr);
10500df0e737SMichael Lange   }
105190b157c4SStefano Zampini   ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr);
105290b157c4SStefano Zampini   ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr);
10530df0e737SMichael Lange   PetscFunctionReturn(0);
10540df0e737SMichael Lange }
10550df0e737SMichael Lange 
105624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
10570df0e737SMichael Lange {
1058df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
10590df0e737SMichael Lange   MPI_Comm         comm;
10607980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
10610df0e737SMichael Lange   PetscMPIInt      rank;
10627980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1063df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1064df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
10650df0e737SMichael Lange   PetscErrorCode   ierr;
10660df0e737SMichael Lange 
10670df0e737SMichael Lange   PetscFunctionBegin;
10680df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10690c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10700c86c063SLisandro Dalcin 
10710df0e737SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
10720df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10730df0e737SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
10740df0e737SMichael Lange 
1075df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
10767980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
10777980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr);
1078d67d17b1SMatthew G. Knepley   if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);}
1079df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
1080b2566f29SBarry Smith   ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr);
1081df0420ecSMatthew G. Knepley   if (sendDepth) {
1082a7998027SVaclav Hapla     ierr = DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel);CHKERRQ(ierr);
1083a7998027SVaclav Hapla     ierr = DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE);CHKERRQ(ierr);
1084df0420ecSMatthew G. Knepley   }
1085d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
1086c58f1c22SToby Isaac   ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr);
1087d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
10880df0e737SMichael Lange   ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr);
1089627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
10905d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1091bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
109283e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput = PETSC_TRUE, isOutput;
1093d67d17b1SMatthew G. Knepley     const char *name = NULL;
10940df0e737SMichael Lange 
1095d67d17b1SMatthew G. Knepley     if (hasLabels) {
1096d67d17b1SMatthew G. Knepley       ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr);
10970df0e737SMichael Lange       /* Skip "depth" because it is recreated */
1098d67d17b1SMatthew G. Knepley       ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr);
1099d67d17b1SMatthew G. Knepley       ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr);
1100d67d17b1SMatthew G. Knepley     }
110183e10cb3SLisandro Dalcin     ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr);
110283e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
1103bdd2d751SMichael Lange     ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr);
110483e10cb3SLisandro Dalcin     if (isDepth) {
11057980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
11067980c9d4SMatthew G. Knepley       PetscInt gdepth;
11077980c9d4SMatthew G. Knepley 
11087980c9d4SMatthew G. Knepley       ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
11097980c9d4SMatthew G. Knepley       if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth);
11107980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
11117980c9d4SMatthew G. Knepley         PetscBool has;
11127980c9d4SMatthew G. Knepley 
11137980c9d4SMatthew G. Knepley         ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr);
111483e10cb3SLisandro Dalcin         if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);}
11157980c9d4SMatthew G. Knepley       }
11167980c9d4SMatthew G. Knepley     }
1117c58f1c22SToby Isaac     ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr);
111883e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
1119d67d17b1SMatthew G. Knepley     if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);}
112083e10cb3SLisandro Dalcin     ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr);
1121d67d17b1SMatthew G. Knepley     ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr);
1122d67d17b1SMatthew G. Knepley     ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr);
112308f633c4SVaclav Hapla     ierr = DMLabelDestroy(&labelNew);CHKERRQ(ierr);
11240df0e737SMichael Lange   }
11250df0e737SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
11260df0e737SMichael Lange   PetscFunctionReturn(0);
11270df0e737SMichael Lange }
11280df0e737SMichael Lange 
112924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1130a6f36705SMichael Lange {
113115078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
113215078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1133a6f36705SMichael Lange   MPI_Comm        comm;
1134a6f36705SMichael Lange   DM              refTree;
1135a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1136a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1137a6f36705SMichael Lange   PetscBool       flg;
1138a6f36705SMichael Lange   PetscErrorCode  ierr;
1139a6f36705SMichael Lange 
1140a6f36705SMichael Lange   PetscFunctionBegin;
1141a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11420c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
1143a6f36705SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1144a6f36705SMichael Lange 
1145a6f36705SMichael Lange   /* Set up tree */
1146a6f36705SMichael Lange   ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr);
1147a6f36705SMichael Lange   ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr);
1148a6f36705SMichael Lange   ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr);
1149a6f36705SMichael Lange   if (origParentSection) {
1150a6f36705SMichael Lange     PetscInt        pStart, pEnd;
115108633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1152a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1153a6f36705SMichael Lange     PetscSF         parentSF;
1154a6f36705SMichael Lange 
1155a6f36705SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
1156a6f36705SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr);
1157a6f36705SMichael Lange     ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr);
1158a6f36705SMichael Lange     ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr);
1159a6f36705SMichael Lange     ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr);
11608a713f3bSLawrence Mitchell     ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr);
1161a6f36705SMichael Lange     ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr);
1162a6f36705SMichael Lange     ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr);
116308633170SToby Isaac     if (original) {
116408633170SToby Isaac       PetscInt numParents;
116508633170SToby Isaac 
116608633170SToby Isaac       ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr);
116708633170SToby Isaac       ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr);
116808633170SToby Isaac       ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr);
116908633170SToby Isaac     }
117008633170SToby Isaac     else {
117108633170SToby Isaac       globParents = origParents;
117208633170SToby Isaac     }
117308633170SToby Isaac     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
117408633170SToby Isaac     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
117508633170SToby Isaac     if (original) {
117608633170SToby Isaac       ierr = PetscFree(globParents);CHKERRQ(ierr);
117708633170SToby Isaac     }
1178a6f36705SMichael Lange     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1179a6f36705SMichael Lange     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1180a6f36705SMichael Lange     ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr);
1181*76bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
11824a54e071SToby Isaac       PetscInt  p;
11834a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
11844a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
11854a54e071SToby Isaac         if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);}
11864a54e071SToby Isaac       }
11874a54e071SToby Isaac       if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
11884a54e071SToby Isaac     }
1189c5929fdfSBarry Smith     ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr);
1190a6f36705SMichael Lange     if (flg) {
1191a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr);
1192a8c5bd36SStefano Zampini       ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1193a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr);
1194a8c5bd36SStefano Zampini       ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1195a6f36705SMichael Lange       ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr);
1196a6f36705SMichael Lange     }
1197a6f36705SMichael Lange     ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr);
1198a6f36705SMichael Lange     ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr);
1199a6f36705SMichael Lange     ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr);
1200a6f36705SMichael Lange     ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr);
1201a6f36705SMichael Lange   }
120215078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1203a6f36705SMichael Lange   PetscFunctionReturn(0);
1204a6f36705SMichael Lange }
12050df0e737SMichael Lange 
120624cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
12074eca1733SMichael Lange {
12089852e123SBarry Smith   PetscMPIInt            rank, size;
12094eca1733SMichael Lange   MPI_Comm               comm;
12104eca1733SMichael Lange   PetscErrorCode         ierr;
12114eca1733SMichael Lange 
12124eca1733SMichael Lange   PetscFunctionBegin;
12134eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12140c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12154eca1733SMichael Lange 
12164eca1733SMichael Lange   /* Create point SF for parallel mesh */
12174eca1733SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12184eca1733SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
12194eca1733SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
12209852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
12214eca1733SMichael Lange   {
12224eca1733SMichael Lange     const PetscInt *leaves;
12234eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
12244eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
12254eca1733SMichael Lange     PetscInt        pStart, pEnd;
12264eca1733SMichael Lange 
12274eca1733SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
12284eca1733SMichael Lange     ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr);
12294eca1733SMichael Lange     ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr);
12304eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
12314eca1733SMichael Lange       rowners[p].rank  = -1;
12324eca1733SMichael Lange       rowners[p].index = -1;
12334eca1733SMichael Lange     }
12344eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12354eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12364eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12374eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
12384eca1733SMichael Lange         lowners[p].rank  = rank;
12394eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
12404eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
12414eca1733SMichael Lange         lowners[p].rank  = -2;
12424eca1733SMichael Lange         lowners[p].index = -2;
12434eca1733SMichael Lange       }
12444eca1733SMichael Lange     }
12454eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
12464eca1733SMichael Lange       rowners[p].rank  = -3;
12474eca1733SMichael Lange       rowners[p].index = -3;
12484eca1733SMichael Lange     }
12494eca1733SMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12504eca1733SMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12514eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12524eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12534eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12544eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
12554eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
12564eca1733SMichael Lange     }
12574eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr);
12584eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr);
12594eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
12604eca1733SMichael Lange       if (lowners[p].rank != rank) {
12614eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
12624eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
12634eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
12644eca1733SMichael Lange         ++gp;
12654eca1733SMichael Lange       }
12664eca1733SMichael Lange     }
12674eca1733SMichael Lange     ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr);
12684eca1733SMichael Lange     ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr);
12694eca1733SMichael Lange     ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr);
12704eca1733SMichael Lange   }
12711cf84007SMatthew G. Knepley   {
12721cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
12731cf84007SMatthew G. Knepley 
1274b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1275b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
12761cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
12771cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
12781cf84007SMatthew G. Knepley   }
12794eca1733SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12804eca1733SMichael Lange   PetscFunctionReturn(0);
12814eca1733SMichael Lange }
12824eca1733SMichael Lange 
128398ba2d7fSLawrence Mitchell /*@
128498ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
128598ba2d7fSLawrence Mitchell 
128698ba2d7fSLawrence Mitchell   Input Parameters:
128798ba2d7fSLawrence Mitchell + dm - The DMPlex object
128898ba2d7fSLawrence Mitchell - flg - Balance the partition?
128998ba2d7fSLawrence Mitchell 
129098ba2d7fSLawrence Mitchell   Level: intermediate
129198ba2d7fSLawrence Mitchell 
129298ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance()
129398ba2d7fSLawrence Mitchell @*/
129498ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
129598ba2d7fSLawrence Mitchell {
129698ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
129798ba2d7fSLawrence Mitchell 
129898ba2d7fSLawrence Mitchell   PetscFunctionBegin;
129998ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
130098ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
130198ba2d7fSLawrence Mitchell }
130298ba2d7fSLawrence Mitchell 
130398ba2d7fSLawrence Mitchell /*@
130498ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
130598ba2d7fSLawrence Mitchell 
130698ba2d7fSLawrence Mitchell   Input Parameter:
1307a2b725a8SWilliam Gropp . dm - The DMPlex object
130898ba2d7fSLawrence Mitchell 
130998ba2d7fSLawrence Mitchell   Output Parameter:
1310a2b725a8SWilliam Gropp . flg - Balance the partition?
131198ba2d7fSLawrence Mitchell 
131298ba2d7fSLawrence Mitchell   Level: intermediate
131398ba2d7fSLawrence Mitchell 
131498ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance()
131598ba2d7fSLawrence Mitchell @*/
131698ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
131798ba2d7fSLawrence Mitchell {
131898ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
131998ba2d7fSLawrence Mitchell 
132098ba2d7fSLawrence Mitchell   PetscFunctionBegin;
132198ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1322534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
132398ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
132498ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
132598ba2d7fSLawrence Mitchell }
132698ba2d7fSLawrence Mitchell 
1327fc02256fSLawrence Mitchell typedef struct {
1328fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1329fc02256fSLawrence Mitchell } Petsc3Int;
1330fc02256fSLawrence Mitchell 
1331fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
1332fc02256fSLawrence Mitchell static void MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype)
1333fc02256fSLawrence Mitchell {
1334fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1335fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1336fc02256fSLawrence Mitchell   PetscInt i, len = *len_;
1337fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1338fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1339fc02256fSLawrence Mitchell       a[i].vote = b[i].vote;
1340fc02256fSLawrence Mitchell       a[i].rank = b[i].rank;
1341fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1342fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1343fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1344fc02256fSLawrence Mitchell         a[i].rank = b[i].rank;
1345fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1346fc02256fSLawrence Mitchell       }
1347fc02256fSLawrence Mitchell     }
1348fc02256fSLawrence Mitchell   }
1349fc02256fSLawrence Mitchell }
1350fc02256fSLawrence Mitchell 
1351f5bf2dbfSMichael Lange /*@C
1352a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1353f5bf2dbfSMichael Lange 
1354064ec1f3Sprj-   Input Parameters:
1355f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1356f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
13571627f6ccSMichael Lange . ownership   - Flag causing a vote to determine point ownership
1358f5bf2dbfSMichael Lange 
1359f5bf2dbfSMichael Lange   Output Parameter:
1360f5bf2dbfSMichael Lange - pointSF     - The star forest describing the point overlap in the remapped DM
1361f5bf2dbfSMichael Lange 
13623618482eSVaclav Hapla   Notes:
13633618482eSVaclav Hapla   Output pointSF is guaranteed to have the array of local indices (leaves) sorted.
13643618482eSVaclav Hapla 
1365f5bf2dbfSMichael Lange   Level: developer
1366f5bf2dbfSMichael Lange 
1367f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
1368f5bf2dbfSMichael Lange @*/
1369f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1370f5bf2dbfSMichael Lange {
137123193802SMatthew G. Knepley   PetscMPIInt        rank, size;
13721627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1373f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1374f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1375f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1376f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
137723193802SMatthew G. Knepley   Vec                shifts;
1378cae3e4f3SLawrence Mitchell   const PetscInt     numShifts = 13759;
137923193802SMatthew G. Knepley   const PetscScalar *shift = NULL;
138023193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
138198ba2d7fSLawrence Mitchell   PetscBool          balance;
1382f5bf2dbfSMichael Lange   PetscErrorCode     ierr;
1383f5bf2dbfSMichael Lange 
1384f5bf2dbfSMichael Lange   PetscFunctionBegin;
1385f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1386f5bf2dbfSMichael Lange   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
1387ab0bc224SMatthew G. Knepley   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
138830b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1389f5bf2dbfSMichael Lange 
139098ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
1391f5bf2dbfSMichael Lange   ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr);
1392f5bf2dbfSMichael Lange   ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr);
1393f5bf2dbfSMichael Lange   if (ownership) {
1394fc02256fSLawrence Mitchell     MPI_Op       op;
1395fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1396fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
139723193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
139898ba2d7fSLawrence Mitchell     if (balance) {
139923193802SMatthew G. Knepley       PetscRandom r;
140023193802SMatthew G. Knepley 
140123193802SMatthew G. Knepley       ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr);
1402cae3e4f3SLawrence Mitchell       ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr);
140323193802SMatthew G. Knepley       ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr);
140423193802SMatthew G. Knepley       ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr);
140523193802SMatthew G. Knepley       ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr);
140623193802SMatthew G. Knepley       ierr = VecSetRandom(shifts, r);CHKERRQ(ierr);
140723193802SMatthew G. Knepley       ierr = PetscRandomDestroy(&r);CHKERRQ(ierr);
140823193802SMatthew G. Knepley       ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr);
140923193802SMatthew G. Knepley     }
141023193802SMatthew G. Knepley 
1411fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nroots, &rootVote);CHKERRQ(ierr);
1412fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nleaves, &leafVote);CHKERRQ(ierr);
141323193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1414f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
141523193802SMatthew G. Knepley       if (shiftDebug) {
1416e7bcd635SMatthew G. Knepley         ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr);
141723193802SMatthew G. Knepley       }
1418f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1419fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size;
1420fc02256fSLawrence Mitchell       leafVote[p].rank = rank;
1421fc02256fSLawrence Mitchell       leafVote[p].index = p;
1422f5bf2dbfSMichael Lange     }
1423f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
14241627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1425fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1426fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1427fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1428f5bf2dbfSMichael Lange     }
1429fc02256fSLawrence Mitchell     ierr = MPI_Type_contiguous(3, MPIU_INT, &datatype);CHKERRQ(ierr);
1430fc02256fSLawrence Mitchell     ierr = MPI_Type_commit(&datatype);CHKERRQ(ierr);
1431fc02256fSLawrence Mitchell     ierr = MPI_Op_create(&MaxLocCarry, 1, &op);CHKERRQ(ierr);
1432fc02256fSLawrence Mitchell     ierr = PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1433fc02256fSLawrence Mitchell     ierr = PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1434fc02256fSLawrence Mitchell     ierr = MPI_Op_free(&op);CHKERRQ(ierr);
1435fc02256fSLawrence Mitchell     ierr = MPI_Type_free(&datatype);CHKERRQ(ierr);
1436c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1437fc02256fSLawrence Mitchell       rootNodes[p].rank = rootVote[p].rank;
1438fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1439c091126eSLawrence Mitchell     }
1440fc02256fSLawrence Mitchell     ierr = PetscFree(leafVote);CHKERRQ(ierr);
1441fc02256fSLawrence Mitchell     ierr = PetscFree(rootVote);CHKERRQ(ierr);
1442f5bf2dbfSMichael Lange   } else {
1443f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1444f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1445f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1446fc02256fSLawrence Mitchell     }
1447f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1448f5bf2dbfSMichael Lange       /* Write new local id into old location */
1449f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
14506462276dSToby Isaac         rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1451f5bf2dbfSMichael Lange       }
1452f5bf2dbfSMichael Lange     }
1453f5bf2dbfSMichael Lange   }
1454f5bf2dbfSMichael Lange   ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1455f5bf2dbfSMichael Lange   ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1456f5bf2dbfSMichael Lange 
145723193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1458b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
145923193802SMatthew G. Knepley   }
14601627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr);
14611627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr);
1462f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1463b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
14643618482eSVaclav Hapla       /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */
1465f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1466f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1467f5bf2dbfSMichael Lange       idx++;
1468f5bf2dbfSMichael Lange     }
1469f5bf2dbfSMichael Lange   }
147023193802SMatthew G. Knepley   if (shift) {
147123193802SMatthew G. Knepley     ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr);
147223193802SMatthew G. Knepley     ierr = VecDestroy(&shifts);CHKERRQ(ierr);
147323193802SMatthew G. Knepley   }
147423193802SMatthew G. Knepley   if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);}
1475f5bf2dbfSMichael Lange   ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr);
14761627f6ccSMichael Lange   ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr);
1477f5bf2dbfSMichael Lange   ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
1478f5bf2dbfSMichael Lange   ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr);
147930b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1480f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1481f5bf2dbfSMichael Lange }
1482f5bf2dbfSMichael Lange 
148315078cd4SMichael Lange /*@C
148415078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
148515078cd4SMichael Lange 
1486d083f849SBarry Smith   Collective on dm
148783655b49SVáclav Hapla 
1488064ec1f3Sprj-   Input Parameters:
148915078cd4SMichael Lange + dm       - The source DMPlex object
14901627f6ccSMichael Lange . sf       - The star forest communication context describing the migration pattern
149115078cd4SMichael Lange 
149215078cd4SMichael Lange   Output Parameter:
149315078cd4SMichael Lange - targetDM - The target DMPlex object
149415078cd4SMichael Lange 
1495b9f40539SMichael Lange   Level: intermediate
149615078cd4SMichael Lange 
149715078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
149815078cd4SMichael Lange @*/
1499b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
150015078cd4SMichael Lange {
1501b9f40539SMichael Lange   MPI_Comm               comm;
1502cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1503b9f40539SMichael Lange   PetscSF                sfPoint;
150415078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1505ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
1506b9f40539SMichael Lange   PetscBool              flg;
150715078cd4SMichael Lange   PetscErrorCode         ierr;
150815078cd4SMichael Lange 
150915078cd4SMichael Lange   PetscFunctionBegin;
151015078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15111b858b30SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
1512b9f40539SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
151315078cd4SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
151415078cd4SMichael Lange   ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr);
1515cc1750acSStefano Zampini   ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr);
1516cc1750acSStefano Zampini   ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr);
151715078cd4SMichael Lange 
1518bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
1519b9f40539SMichael Lange   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
1520b9f40539SMichael Lange   ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
1521bfb0467fSMichael Lange   if (nroots >= 0) {
1522b9f40539SMichael Lange     IS        isOriginal;
1523ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1524ac04eaf7SToby Isaac     PetscInt  *numbering_orig, *numbering_new;
1525367003a6SStefano Zampini 
1526b9f40539SMichael Lange     /* Get the original point numbering */
1527b9f40539SMichael Lange     ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr);
1528b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal);CHKERRQ(ierr);
1529b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr);
1530b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1531b9f40539SMichael Lange     /* Convert to positive global numbers */
1532b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1533b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
1534b9f40539SMichael Lange     ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
1535b9f40539SMichael Lange     ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr);
15366e0288c8SStefano Zampini     ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr);
15376e0288c8SStefano Zampini     ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr);
15386e0288c8SStefano Zampini     ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration);CHKERRQ(ierr);
1539b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1540b9f40539SMichael Lange     ierr = ISDestroy(&isOriginal);CHKERRQ(ierr);
154115078cd4SMichael Lange   } else {
1542bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
154315078cd4SMichael Lange     ierr = ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration);CHKERRQ(ierr);
154415078cd4SMichael Lange   }
1545c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
1546b9f40539SMichael Lange   if (flg) {
1547b9f40539SMichael Lange     ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr);
1548b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr);
1549b9f40539SMichael Lange   }
155015078cd4SMichael Lange   /* Migrate DM data to target DM */
1551ac04eaf7SToby Isaac   ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
155215078cd4SMichael Lange   ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr);
15530dc1530dSSander Arens   ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr);
155408633170SToby Isaac   ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
1555ac04eaf7SToby Isaac   ierr = ISLocalToGlobalMappingDestroy(&ltogOriginal);CHKERRQ(ierr);
1556302440fdSBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&ltogMigration);CHKERRQ(ierr);
15571b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
155815078cd4SMichael Lange   PetscFunctionReturn(0);
155915078cd4SMichael Lange }
156015078cd4SMichael Lange 
15613b8f15a2SMatthew G. Knepley /*@C
156270034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
156370034214SMatthew G. Knepley 
1564d083f849SBarry Smith   Collective on dm
156570034214SMatthew G. Knepley 
1566064ec1f3Sprj-   Input Parameters:
156770034214SMatthew G. Knepley + dm  - The original DMPlex object
156870034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
156970034214SMatthew G. Knepley 
1570064ec1f3Sprj-   Output Parameters:
1571f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1572f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
157370034214SMatthew G. Knepley 
1574f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
157570034214SMatthew G. Knepley 
1576b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
157770034214SMatthew G. Knepley   representation on the mesh.
157870034214SMatthew G. Knepley 
157970034214SMatthew G. Knepley   Level: intermediate
158070034214SMatthew G. Knepley 
1581cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexGetOverlap()
158270034214SMatthew G. Knepley @*/
158380cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
158470034214SMatthew G. Knepley {
158570034214SMatthew G. Knepley   MPI_Comm               comm;
158615078cd4SMichael Lange   PetscPartitioner       partitioner;
1587f8987ae8SMichael Lange   IS                     cellPart;
1588f8987ae8SMichael Lange   PetscSection           cellPartSection;
1589cf86098cSMatthew G. Knepley   DM                     dmCoord;
1590f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
1591874ddda9SLisandro Dalcin   PetscSF                sfMigration, sfStratified, sfPoint;
159298ba2d7fSLawrence Mitchell   PetscBool              flg, balance;
1593874ddda9SLisandro Dalcin   PetscMPIInt            rank, size;
159470034214SMatthew G. Knepley   PetscErrorCode         ierr;
159570034214SMatthew G. Knepley 
159670034214SMatthew G. Knepley   PetscFunctionBegin;
159770034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1598d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1599d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf,3);
1600d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel,4);
160170034214SMatthew G. Knepley 
16020c86c063SLisandro Dalcin   if (sf) *sf = NULL;
16030c86c063SLisandro Dalcin   *dmParallel = NULL;
160470034214SMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
160570034214SMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
16069852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
16070c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
160870034214SMatthew G. Knepley 
16090c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
161015078cd4SMichael Lange   /* Create cell partition */
161167eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
161277623264SMatthew G. Knepley   ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr);
161315078cd4SMichael Lange   ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr);
16143c41b853SStefano Zampini   ierr = PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart);CHKERRQ(ierr);
161530b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
1616f8987ae8SMichael Lange   {
1617f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1618825f8a23SLisandro Dalcin     IS             is;
1619825f8a23SLisandro Dalcin     PetscHSetI     ht;
1620f8987ae8SMichael Lange     const PetscInt *points;
16218e330a33SStefano Zampini     PetscInt       *iranks;
16228e330a33SStefano Zampini     PetscInt       pStart, pEnd, proc, npoints, poff = 0, nranks;
1623825f8a23SLisandro Dalcin 
1624d67d17b1SMatthew G. Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr);
1625825f8a23SLisandro Dalcin     /* Preallocate strata */
1626825f8a23SLisandro Dalcin     ierr = PetscHSetICreate(&ht);CHKERRQ(ierr);
1627825f8a23SLisandro Dalcin     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1628825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
1629825f8a23SLisandro Dalcin       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1630825f8a23SLisandro Dalcin       if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);}
1631825f8a23SLisandro Dalcin     }
1632825f8a23SLisandro Dalcin     ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr);
1633825f8a23SLisandro Dalcin     ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr);
1634825f8a23SLisandro Dalcin     ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr);
1635825f8a23SLisandro Dalcin     ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr);
1636825f8a23SLisandro Dalcin     ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr);
1637825f8a23SLisandro Dalcin     ierr = PetscFree(iranks);CHKERRQ(ierr);
1638825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
1639f8987ae8SMichael Lange     ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr);
1640f8987ae8SMichael Lange     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1641f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
1642f8987ae8SMichael Lange       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1643825f8a23SLisandro Dalcin       if (!npoints) continue;
1644825f8a23SLisandro Dalcin       ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr);
16458e330a33SStefano Zampini       ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr);
1646825f8a23SLisandro Dalcin       ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr);
1647825f8a23SLisandro Dalcin       ierr = ISDestroy(&is);CHKERRQ(ierr);
1648f8987ae8SMichael Lange     }
1649f8987ae8SMichael Lange     ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr);
1650f8987ae8SMichael Lange   }
165130b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
16526e203dd9SStefano Zampini 
1653d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr);
1654874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr);
1655302440fdSBarry Smith   ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr);
165643f7d02bSMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr);
165743f7d02bSMichael Lange   ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
165843f7d02bSMichael Lange   sfMigration = sfStratified;
165930b0ce1bSStefano Zampini   ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr);
166067eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1661c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
166270034214SMatthew G. Knepley   if (flg) {
1663a8c5bd36SStefano Zampini     ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1664a8c5bd36SStefano Zampini     ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
166570034214SMatthew G. Knepley   }
1666f8987ae8SMichael Lange 
166715078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
166870034214SMatthew G. Knepley   ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr);
166970034214SMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr);
1670b9f40539SMichael Lange   ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr);
167170034214SMatthew G. Knepley 
1672a157612eSMichael Lange   /* Build the point SF without overlap */
167398ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
167498ba2d7fSLawrence Mitchell   ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr);
16751627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr);
1676f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr);
1677cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr);
1678cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1679a8c5bd36SStefano Zampini   if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);}
168070034214SMatthew G. Knepley 
1681a157612eSMichael Lange   if (overlap > 0) {
168215078cd4SMichael Lange     DM                 dmOverlap;
168357f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
168457f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
168557f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
168615078cd4SMichael Lange     const PetscSFNode *oldRemote;
168715078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1688524e35f8SStefano Zampini 
1689a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
1690b9f40539SMichael Lange     ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr);
1691a157612eSMichael Lange     ierr = DMDestroy(dmParallel);CHKERRQ(ierr);
1692a157612eSMichael Lange     *dmParallel = dmOverlap;
1693c389ea9fSToby Isaac     if (flg) {
16943d822a50SMichael Lange       ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr);
169515078cd4SMichael Lange       ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr);
1696c389ea9fSToby Isaac     }
169743331d4aSMichael Lange 
1698f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
169957f290daSMatthew G. Knepley     ierr = PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote);CHKERRQ(ierr);
170015078cd4SMichael Lange     ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
170143331d4aSMichael Lange     ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr);
170257f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
170357f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
170457f290daSMatthew G. Knepley     if (oldLeaves) {
170573e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
170673e69a6aSMatthew G. Knepley       ierr = PetscMalloc1(noldleaves, &permRemote);CHKERRQ(ierr);
170757f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
170857f290daSMatthew G. Knepley       oldRemote = permRemote;
170957f290daSMatthew G. Knepley     }
171015078cd4SMichael Lange     ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
171115078cd4SMichael Lange     ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
171257f290daSMatthew G. Knepley     if (oldLeaves) {ierr = PetscFree(oldRemote);CHKERRQ(ierr);}
171315078cd4SMichael Lange     ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr);
171415078cd4SMichael Lange     ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
171515078cd4SMichael Lange     ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1716f8987ae8SMichael Lange     ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
171715078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1718c389ea9fSToby Isaac   }
1719bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
1720f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr);
1721f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr);
17224eca1733SMichael Lange   ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr);
17234eca1733SMichael Lange   ierr = ISDestroy(&cellPart);CHKERRQ(ierr);
1724721cbd76SMatthew G. Knepley   /* Copy BC */
1725a6ba4734SToby Isaac   ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr);
172666fe0bfeSMatthew G. Knepley   /* Create sfNatural */
172766fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
172866fe0bfeSMatthew G. Knepley     PetscSection section;
172966fe0bfeSMatthew G. Knepley 
173092fd8e1eSJed Brown     ierr = DMGetLocalSection(dm, &section);CHKERRQ(ierr);
17310c1f158bSMatthew G. Knepley     ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr);
17320e663481SBlaise Bourdin     ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr);
173366fe0bfeSMatthew G. Knepley   }
1734721cbd76SMatthew G. Knepley   /* Cleanup */
1735f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
1736f8987ae8SMichael Lange   else    {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);}
1737f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
173870034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
173970034214SMatthew G. Knepley   PetscFunctionReturn(0);
174070034214SMatthew G. Knepley }
1741a157612eSMichael Lange 
1742a157612eSMichael Lange /*@C
174324cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1744a157612eSMichael Lange 
1745d083f849SBarry Smith   Collective on dm
1746a157612eSMichael Lange 
1747064ec1f3Sprj-   Input Parameters:
1748064ec1f3Sprj- + dm  - The non-overlapping distributed DMPlex object
174957fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1750a157612eSMichael Lange 
1751064ec1f3Sprj-   Output Parameters:
1752a157612eSMichael Lange + sf - The PetscSF used for point distribution
1753a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1754a157612eSMichael Lange 
1755dccdeccaSVaclav Hapla   Notes:
1756dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1757a157612eSMichael Lange 
1758b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1759a157612eSMichael Lange   representation on the mesh.
1760a157612eSMichael Lange 
1761dccdeccaSVaclav Hapla   Level: advanced
1762a157612eSMichael Lange 
1763cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexDistribute(), DMPlexCreateOverlapLabel(), DMPlexGetOverlap()
1764a157612eSMichael Lange @*/
1765b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1766a157612eSMichael Lange {
1767a157612eSMichael Lange   MPI_Comm               comm;
17683567eaeeSMatthew G. Knepley   PetscMPIInt            size, rank;
1769a157612eSMichael Lange   PetscSection           rootSection, leafSection;
1770a157612eSMichael Lange   IS                     rootrank, leafrank;
1771cf86098cSMatthew G. Knepley   DM                     dmCoord;
1772a9f1d5b2SMichael Lange   DMLabel                lblOverlap;
1773f5bf2dbfSMichael Lange   PetscSF                sfOverlap, sfStratified, sfPoint;
1774a157612eSMichael Lange   PetscErrorCode         ierr;
1775a157612eSMichael Lange 
1776a157612eSMichael Lange   PetscFunctionBegin;
1777a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
177857fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1779a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1780a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1781a157612eSMichael Lange 
17820c86c063SLisandro Dalcin   if (sf) *sf = NULL;
17830c86c063SLisandro Dalcin   *dmOverlap  = NULL;
1784a157612eSMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
17853567eaeeSMatthew G. Knepley   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
1786a157612eSMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
17870c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1788a157612eSMichael Lange 
17890c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1790a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
179167eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1792a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr);
1793a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr);
1794a157612eSMichael Lange   ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr);
1795dccdeccaSVaclav Hapla   ierr = DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr);
1796a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
1797a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr);
1798a9f1d5b2SMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr);
1799a9f1d5b2SMichael Lange   ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1800a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
1801a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr);
1802a9f1d5b2SMichael Lange   ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr);
1803a9f1d5b2SMichael Lange 
180415fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr);
180515fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr);
180615fff7beSMatthew G. Knepley   ierr = ISDestroy(&rootrank);CHKERRQ(ierr);
180715fff7beSMatthew G. Knepley   ierr = ISDestroy(&leafrank);CHKERRQ(ierr);
180867eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1809a157612eSMichael Lange 
1810a157612eSMichael Lange   /* Build the overlapping DM */
1811a157612eSMichael Lange   ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr);
1812a157612eSMichael Lange   ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr);
1813a9f1d5b2SMichael Lange   ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr);
1814cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
1815cb54e036SVaclav Hapla   ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap;
1816f5bf2dbfSMichael Lange   /* Build the new point SF */
18171627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
1818f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr);
1819cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr);
1820cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1821f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1822a157612eSMichael Lange   /* Cleanup overlap partition */
1823a9f1d5b2SMichael Lange   ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr);
1824a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
1825a9f1d5b2SMichael Lange   else    {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);}
18261b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1827a157612eSMichael Lange   PetscFunctionReturn(0);
1828a157612eSMichael Lange }
18296462276dSToby Isaac 
1830cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap)
1831cb54e036SVaclav Hapla {
1832cb54e036SVaclav Hapla   DM_Plex        *mesh  = (DM_Plex*) dm->data;
1833cb54e036SVaclav Hapla 
1834cb54e036SVaclav Hapla   PetscFunctionBegin;
1835cb54e036SVaclav Hapla   *overlap = mesh->overlap;
1836cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1837cb54e036SVaclav Hapla }
1838cb54e036SVaclav Hapla 
1839cb54e036SVaclav Hapla /*@
1840cb54e036SVaclav Hapla   DMPlexGetOverlap - Get the DMPlex partition overlap.
1841cb54e036SVaclav Hapla 
1842cb54e036SVaclav Hapla   Not collective
1843cb54e036SVaclav Hapla 
1844cb54e036SVaclav Hapla   Input Parameter:
1845cb54e036SVaclav Hapla . dm - The DM
1846cb54e036SVaclav Hapla 
1847064ec1f3Sprj-   Output Parameter:
1848cb54e036SVaclav Hapla . overlap - The overlap of this DM
1849cb54e036SVaclav Hapla 
1850cb54e036SVaclav Hapla   Level: intermediate
1851cb54e036SVaclav Hapla 
1852cb54e036SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexDistributeOverlap(), DMPlexCreateOverlapLabel()
1853cb54e036SVaclav Hapla @*/
1854cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap)
1855cb54e036SVaclav Hapla {
1856cb54e036SVaclav Hapla   PetscErrorCode     ierr;
1857cb54e036SVaclav Hapla 
1858cb54e036SVaclav Hapla   PetscFunctionBegin;
1859cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1860cb54e036SVaclav Hapla   ierr = PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));CHKERRQ(ierr);
1861cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1862cb54e036SVaclav Hapla }
1863cb54e036SVaclav Hapla 
1864cb54e036SVaclav Hapla 
18656462276dSToby Isaac /*@C
18666462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
18676462276dSToby Isaac   root process of the original's communicator.
18686462276dSToby Isaac 
1869d083f849SBarry Smith   Collective on dm
187083655b49SVáclav Hapla 
1871064ec1f3Sprj-   Input Parameter:
18726462276dSToby Isaac . dm - the original DMPlex object
18736462276dSToby Isaac 
18746462276dSToby Isaac   Output Parameters:
1875a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1876a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
18776462276dSToby Isaac 
18786462276dSToby Isaac   Level: intermediate
18796462276dSToby Isaac 
18806462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM()
18816462276dSToby Isaac @*/
1882a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
18836462276dSToby Isaac {
18846462276dSToby Isaac   MPI_Comm       comm;
18856462276dSToby Isaac   PetscMPIInt    size;
18866462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
18876462276dSToby Isaac   PetscErrorCode ierr;
18886462276dSToby Isaac 
18896462276dSToby Isaac   PetscFunctionBegin;
18906462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
18910c86c063SLisandro Dalcin   PetscValidPointer(gatherMesh,2);
18920c86c063SLisandro Dalcin   *gatherMesh = NULL;
1893a13df41bSStefano Zampini   if (sf) *sf = NULL;
18946462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
18956462276dSToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
18966462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
18976462276dSToby Isaac   ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr);
18986462276dSToby Isaac   ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr);
18996462276dSToby Isaac   ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr);
19006462276dSToby Isaac   ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr);
19016462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr);
1902a13df41bSStefano Zampini   ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr);
1903a13df41bSStefano Zampini 
19046462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr);
19056462276dSToby Isaac   ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr);
19066462276dSToby Isaac   ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr);
19076462276dSToby Isaac   PetscFunctionReturn(0);
19086462276dSToby Isaac }
19096462276dSToby Isaac 
19106462276dSToby Isaac /*@C
19116462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
19126462276dSToby Isaac 
1913d083f849SBarry Smith   Collective on dm
191483655b49SVáclav Hapla 
1915064ec1f3Sprj-   Input Parameter:
19166462276dSToby Isaac . dm - the original DMPlex object
19176462276dSToby Isaac 
19186462276dSToby Isaac   Output Parameters:
1919a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1920a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
19216462276dSToby Isaac 
19226462276dSToby Isaac   Level: intermediate
19236462276dSToby Isaac 
19246462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM()
19256462276dSToby Isaac @*/
1926a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
19276462276dSToby Isaac {
19286462276dSToby Isaac   MPI_Comm       comm;
19296462276dSToby Isaac   PetscMPIInt    size, rank;
19306462276dSToby Isaac   PetscInt       pStart, pEnd, p;
19316462276dSToby Isaac   PetscInt       numPoints = -1;
1932a13df41bSStefano Zampini   PetscSF        migrationSF, sfPoint, gatherSF;
19336462276dSToby Isaac   DM             gatherDM, dmCoord;
19346462276dSToby Isaac   PetscSFNode    *points;
19356462276dSToby Isaac   PetscErrorCode ierr;
19366462276dSToby Isaac 
19376462276dSToby Isaac   PetscFunctionBegin;
19386462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
19390c86c063SLisandro Dalcin   PetscValidPointer(redundantMesh,2);
19400c86c063SLisandro Dalcin   *redundantMesh = NULL;
19416462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
19426462276dSToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
194368dbc166SMatthew G. Knepley   if (size == 1) {
194468dbc166SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
194568dbc166SMatthew G. Knepley     *redundantMesh = dm;
1946a13df41bSStefano Zampini     if (sf) *sf = NULL;
194768dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
194868dbc166SMatthew G. Knepley   }
1949a13df41bSStefano Zampini   ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr);
19506462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
19516462276dSToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
19526462276dSToby Isaac   ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr);
19536462276dSToby Isaac   numPoints = pEnd - pStart;
19546462276dSToby Isaac   ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr);
19556462276dSToby Isaac   ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr);
19566462276dSToby Isaac   ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr);
19576462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
19586462276dSToby Isaac     points[p].index = p;
19596462276dSToby Isaac     points[p].rank  = 0;
19606462276dSToby Isaac   }
19616462276dSToby Isaac   ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr);
19626462276dSToby Isaac   ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr);
19636462276dSToby Isaac   ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr);
19646462276dSToby Isaac   ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr);
19656462276dSToby Isaac   ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
19666462276dSToby Isaac   ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr);
19676462276dSToby Isaac   ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr);
19686462276dSToby Isaac   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
19696462276dSToby Isaac   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1970a13df41bSStefano Zampini   if (sf) {
1971a13df41bSStefano Zampini     PetscSF tsf;
1972a13df41bSStefano Zampini 
1973a13df41bSStefano Zampini     ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr);
1974a13df41bSStefano Zampini     ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr);
1975a13df41bSStefano Zampini     ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr);
1976a13df41bSStefano Zampini   }
19776462276dSToby Isaac   ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr);
1978a13df41bSStefano Zampini   ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr);
19796462276dSToby Isaac   ierr = DMDestroy(&gatherDM);CHKERRQ(ierr);
19806462276dSToby Isaac   PetscFunctionReturn(0);
19816462276dSToby Isaac }
19825fa78c88SVaclav Hapla 
19835fa78c88SVaclav Hapla /*@
19845fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
19855fa78c88SVaclav Hapla 
19865fa78c88SVaclav Hapla   Collective
19875fa78c88SVaclav Hapla 
19885fa78c88SVaclav Hapla   Input Parameter:
19895fa78c88SVaclav Hapla . dm      - The DM object
19905fa78c88SVaclav Hapla 
19915fa78c88SVaclav Hapla   Output Parameter:
19925fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
19935fa78c88SVaclav Hapla 
19945fa78c88SVaclav Hapla   Level: intermediate
19955fa78c88SVaclav Hapla 
19965fa78c88SVaclav Hapla   Notes:
19975fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
19985fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
19995fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
20005fa78c88SVaclav Hapla 
20015fa78c88SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexGetOverlap(), DMPlexIsInterpolated()
20025fa78c88SVaclav Hapla @*/
20035fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed)
20045fa78c88SVaclav Hapla {
20055fa78c88SVaclav Hapla   PetscInt          pStart, pEnd, count;
20065fa78c88SVaclav Hapla   MPI_Comm          comm;
20075fa78c88SVaclav Hapla   PetscErrorCode    ierr;
20085fa78c88SVaclav Hapla 
20095fa78c88SVaclav Hapla   PetscFunctionBegin;
20105fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20115fa78c88SVaclav Hapla   PetscValidPointer(distributed,2);
20125fa78c88SVaclav Hapla   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
20135fa78c88SVaclav Hapla   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
20145fa78c88SVaclav Hapla   count = !!(pEnd - pStart);
20155fa78c88SVaclav Hapla   ierr = MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm);CHKERRQ(ierr);
20165fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
20175fa78c88SVaclav Hapla   PetscFunctionReturn(0);
20185fa78c88SVaclav Hapla }
2019