1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser() 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 393c1f0c11SLawrence Mitchell - user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser() 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 975b317d89SToby Isaac PetscValidIntPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley PetscErrorCode ierr; 10770034214SMatthew G. Knepley 10870034214SMatthew G. Knepley PetscFunctionBeginHot; 10970034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 11070034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 1114b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1124b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11370034214SMatthew G. Knepley const PetscInt *support = NULL; 11470034214SMatthew G. Knepley PetscInt supportSize, s, q; 11570034214SMatthew G. Knepley 1164b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 1174b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 11870034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 119527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 12070034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12170034214SMatthew G. Knepley } 12270034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley } 12570034214SMatthew G. Knepley *adjSize = numAdj; 12670034214SMatthew G. Knepley PetscFunctionReturn(0); 12770034214SMatthew G. Knepley } 12870034214SMatthew G. Knepley 12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 13070034214SMatthew G. Knepley { 13170034214SMatthew G. Knepley const PetscInt *support = NULL; 13270034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13370034214SMatthew G. Knepley PetscErrorCode ierr; 13470034214SMatthew G. Knepley 13570034214SMatthew G. Knepley PetscFunctionBeginHot; 13670034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 13770034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 1384b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1394b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 14070034214SMatthew G. Knepley const PetscInt *cone = NULL; 14170034214SMatthew G. Knepley PetscInt coneSize, c, q; 14270034214SMatthew G. Knepley 1434b6b44bdSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1444b6b44bdSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 14570034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 146527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14770034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 15070034214SMatthew G. Knepley } 15170034214SMatthew G. Knepley } 15270034214SMatthew G. Knepley *adjSize = numAdj; 15370034214SMatthew G. Knepley PetscFunctionReturn(0); 15470034214SMatthew G. Knepley } 15570034214SMatthew G. Knepley 15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15770034214SMatthew G. Knepley { 15870034214SMatthew G. Knepley PetscInt *star = NULL; 15970034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 16070034214SMatthew G. Knepley PetscErrorCode ierr; 16170034214SMatthew G. Knepley 16270034214SMatthew G. Knepley PetscFunctionBeginHot; 16370034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 16470034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16570034214SMatthew G. Knepley const PetscInt *closure = NULL; 16670034214SMatthew G. Knepley PetscInt closureSize, c, q; 16770034214SMatthew G. Knepley 16870034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 16970034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 170527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 17170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 17270034214SMatthew G. Knepley } 17370034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 17470034214SMatthew G. Knepley } 17570034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 17670034214SMatthew G. Knepley } 17770034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 17870034214SMatthew G. Knepley *adjSize = numAdj; 17970034214SMatthew G. Knepley PetscFunctionReturn(0); 18070034214SMatthew G. Knepley } 18170034214SMatthew G. Knepley 1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18370034214SMatthew G. Knepley { 18479bad331SMatthew G. Knepley static PetscInt asiz = 0; 1858b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1868b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1878b0b4c70SToby Isaac PetscInt maxAdjSize; 1888b0b4c70SToby Isaac PetscSection aSec = NULL; 1898b0b4c70SToby Isaac IS aIS = NULL; 1908b0b4c70SToby Isaac const PetscInt *anchors; 1913c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 19270034214SMatthew G. Knepley PetscErrorCode ierr; 19370034214SMatthew G. Knepley 19470034214SMatthew G. Knepley PetscFunctionBeginHot; 1955b317d89SToby Isaac if (useAnchors) { 196a17985deSToby Isaac ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr); 1978b0b4c70SToby Isaac if (aSec) { 1988b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 19924c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 2008b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 2018b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 2028b0b4c70SToby Isaac } 2038b0b4c70SToby Isaac } 20479bad331SMatthew G. Knepley if (!*adj) { 20524c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20679bad331SMatthew G. Knepley 20724c766afSToby Isaac ierr = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr); 20879bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 209412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 21024c766afSToby Isaac ierr = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr); 21124c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 21224c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 21324c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2148b0b4c70SToby Isaac asiz *= maxAnchors; 21524c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 21679bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 21779bad331SMatthew G. Knepley } 21879bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2198b0b4c70SToby Isaac maxAdjSize = *adjSize; 2203c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 22162f17a49SStefano Zampini ierr = (*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr); 2223c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 22379bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 22470034214SMatthew G. Knepley } else if (useCone) { 22579bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22670034214SMatthew G. Knepley } else { 22779bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22870034214SMatthew G. Knepley } 2295b317d89SToby Isaac if (useAnchors && aSec) { 2308b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2318b0b4c70SToby Isaac PetscInt numAdj = origSize; 2328b0b4c70SToby Isaac PetscInt i = 0, j; 2338b0b4c70SToby Isaac PetscInt *orig = *adj; 2348b0b4c70SToby Isaac 2358b0b4c70SToby Isaac while (i < origSize) { 2368b0b4c70SToby Isaac PetscInt p = orig[i]; 2378b0b4c70SToby Isaac PetscInt aDof = 0; 2388b0b4c70SToby Isaac 2398b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2408b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 2418b0b4c70SToby Isaac } 2428b0b4c70SToby Isaac if (aDof) { 2438b0b4c70SToby Isaac PetscInt aOff; 2448b0b4c70SToby Isaac PetscInt s, q; 2458b0b4c70SToby Isaac 2468b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2478b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2488b0b4c70SToby Isaac } 2498b0b4c70SToby Isaac origSize--; 2508b0b4c70SToby Isaac numAdj--; 2518b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 2528b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 253527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2548b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2558b0b4c70SToby Isaac } 2568b0b4c70SToby Isaac if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac } 2598b0b4c70SToby Isaac else { 2608b0b4c70SToby Isaac i++; 2618b0b4c70SToby Isaac } 2628b0b4c70SToby Isaac } 2638b0b4c70SToby Isaac *adjSize = numAdj; 2648b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 2658b0b4c70SToby Isaac } 26670034214SMatthew G. Knepley PetscFunctionReturn(0); 26770034214SMatthew G. Knepley } 26870034214SMatthew G. Knepley 26970034214SMatthew G. Knepley /*@ 27070034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 27170034214SMatthew G. Knepley 27270034214SMatthew G. Knepley Input Parameters: 27370034214SMatthew G. Knepley + dm - The DM object 27470034214SMatthew G. Knepley . p - The point 27570034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE 27670034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize 27770034214SMatthew G. Knepley 27870034214SMatthew G. Knepley Output Parameters: 27970034214SMatthew G. Knepley + adjSize - The number of adjacent points 28070034214SMatthew G. Knepley - adj - The adjacent points 28170034214SMatthew G. Knepley 28270034214SMatthew G. Knepley Level: advanced 28370034214SMatthew G. Knepley 28495452b02SPatrick Sanan Notes: 28595452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28670034214SMatthew G. Knepley 287b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 28870034214SMatthew G. Knepley @*/ 28970034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 29070034214SMatthew G. Knepley { 2911cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 29270034214SMatthew G. Knepley PetscErrorCode ierr; 29370034214SMatthew G. Knepley 29470034214SMatthew G. Knepley PetscFunctionBeginHot; 29570034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29670034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 29770034214SMatthew G. Knepley PetscValidPointer(adj,4); 298b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 2991cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 3001cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr); 30170034214SMatthew G. Knepley PetscFunctionReturn(0); 30270034214SMatthew G. Knepley } 30308633170SToby Isaac 304b0a623aaSMatthew G. Knepley /*@ 305b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 306b0a623aaSMatthew G. Knepley 307d083f849SBarry Smith Collective on dm 308b0a623aaSMatthew G. Knepley 309b0a623aaSMatthew G. Knepley Input Parameters: 310b0a623aaSMatthew G. Knepley + dm - The DM 311b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity 312b0a623aaSMatthew G. Knepley 313b0a623aaSMatthew G. Knepley Output Parameters: 314b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 315b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 316b0a623aaSMatthew G. Knepley 317b0a623aaSMatthew G. Knepley Level: developer 318b0a623aaSMatthew G. Knepley 319b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF() 320b0a623aaSMatthew G. Knepley @*/ 321b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 322b0a623aaSMatthew G. Knepley { 323b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 324b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 325b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 326b0a623aaSMatthew G. Knepley const PetscInt *nranks; 327b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 328b0a623aaSMatthew G. Knepley PetscBT neighbors; 329b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3309852e123SBarry Smith PetscMPIInt size, proc, rank; 331b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 332b0a623aaSMatthew G. Knepley 333b0a623aaSMatthew G. Knepley PetscFunctionBegin; 334b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 335b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 336b0a623aaSMatthew G. Knepley if (processRanks) {PetscValidPointer(processRanks, 3);} 337b0a623aaSMatthew G. Knepley if (sfProcess) {PetscValidPointer(sfProcess, 4);} 3389852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 339b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 340b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr); 3419852e123SBarry Smith ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr); 3429852e123SBarry Smith ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr); 343b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 344b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr); 345b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr); 346b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 347b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 348b0a623aaSMatthew G. Knepley 349b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr); 350b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr); 351302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 352b0a623aaSMatthew G. Knepley } 353b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr); 354b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 355b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr); 356b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr); 357b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 358b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 359b0a623aaSMatthew G. Knepley 360b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr); 361b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr); 362302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 363b0a623aaSMatthew G. Knepley } 364b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr); 365b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 366b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 367b0a623aaSMatthew G. Knepley /* Calculate edges */ 368b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3699852e123SBarry Smith for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 370b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr); 371b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr); 372b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr); 3739852e123SBarry Smith for(proc = 0, n = 0; proc < size; ++proc) { 374b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 375b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 376b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 377b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 378b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 379b0a623aaSMatthew G. Knepley ++n; 380b0a623aaSMatthew G. Knepley } 381b0a623aaSMatthew G. Knepley } 382b0a623aaSMatthew G. Knepley ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr); 383b0a623aaSMatthew G. Knepley if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);} 384b0a623aaSMatthew G. Knepley else {ierr = PetscFree(ranksNew);CHKERRQ(ierr);} 385b0a623aaSMatthew G. Knepley if (sfProcess) { 386b0a623aaSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr); 387b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr); 388b0a623aaSMatthew G. Knepley ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr); 3899852e123SBarry Smith ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 390b0a623aaSMatthew G. Knepley } 391b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 392b0a623aaSMatthew G. Knepley } 393b0a623aaSMatthew G. Knepley 394b0a623aaSMatthew G. Knepley /*@ 395b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 396b0a623aaSMatthew G. Knepley 397d083f849SBarry Smith Collective on dm 398b0a623aaSMatthew G. Knepley 399b0a623aaSMatthew G. Knepley Input Parameter: 400b0a623aaSMatthew G. Knepley . dm - The DM 401b0a623aaSMatthew G. Knepley 402b0a623aaSMatthew G. Knepley Output Parameters: 403b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 404b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 405b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 406b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 407b0a623aaSMatthew G. Knepley 408b0a623aaSMatthew G. Knepley Level: developer 409b0a623aaSMatthew G. Knepley 410dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistribute(), DMPlexDistributeOverlap() 411b0a623aaSMatthew G. Knepley @*/ 412b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 413b0a623aaSMatthew G. Knepley { 414b0a623aaSMatthew G. Knepley MPI_Comm comm; 415b0a623aaSMatthew G. Knepley PetscSF sfPoint; 416b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 417b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 418b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 419b0a623aaSMatthew G. Knepley PetscMPIInt rank; 420b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 421b0a623aaSMatthew G. Knepley 422b0a623aaSMatthew G. Knepley PetscFunctionBegin; 423b0a623aaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 424b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 425b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 426b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 427b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 428b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr); 429b0a623aaSMatthew G. Knepley ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr); 430b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr); 431b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr); 432b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);} 433b0a623aaSMatthew G. Knepley ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr); 434b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 435b0a623aaSMatthew G. Knepley ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr); 436b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr); 437b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(nedges, &remoterank);CHKERRQ(ierr); 438b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 439b0a623aaSMatthew G. Knepley ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 440b0a623aaSMatthew G. Knepley ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 441b0a623aaSMatthew G. Knepley ierr = PetscFree(myrank);CHKERRQ(ierr); 442b0a623aaSMatthew G. Knepley ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr); 443b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 444b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr); 445b0a623aaSMatthew G. Knepley ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr); 446b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 447b0a623aaSMatthew G. Knepley } 448b0a623aaSMatthew G. Knepley 449278397a0SMatthew G. Knepley /*@C 450dccdeccaSVaclav Hapla DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF. 451b0a623aaSMatthew G. Knepley 452d083f849SBarry Smith Collective on dm 453b0a623aaSMatthew G. Knepley 454b0a623aaSMatthew G. Knepley Input Parameters: 455b0a623aaSMatthew G. Knepley + dm - The DM 45624d039d7SMichael Lange . levels - Number of overlap levels 457b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 458b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 459b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 460b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 461b0a623aaSMatthew G. Knepley 462064ec1f3Sprj- Output Parameter: 463b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 464b0a623aaSMatthew G. Knepley 465b0a623aaSMatthew G. Knepley Level: developer 466b0a623aaSMatthew G. Knepley 4671fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute() 468b0a623aaSMatthew G. Knepley @*/ 469dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 470b0a623aaSMatthew G. Knepley { 471e540f424SMichael Lange MPI_Comm comm; 472b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 473874ddda9SLisandro Dalcin PetscSF sfPoint; 474b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 475b0a623aaSMatthew G. Knepley const PetscInt *local; 4761fd9873aSMichael Lange const PetscInt *nrank, *rrank; 477b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4781fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4799852e123SBarry Smith PetscMPIInt rank, size; 48031bc6364SLisandro Dalcin PetscBool flg; 481b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 482b0a623aaSMatthew G. Knepley 483b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4846ba1a4c7SVaclav Hapla *ovLabel = NULL; 485e540f424SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 4869852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 487e540f424SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 4886ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 489b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 490b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 491b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr); 492b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr); 493d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr); 494b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 495b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 496b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 497b0a623aaSMatthew G. Knepley 498df20756eSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr); 499b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);} 500b0a623aaSMatthew G. Knepley } 501b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr); 502b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr); 503b0a623aaSMatthew G. Knepley /* Handle roots */ 504b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 505b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 506b0a623aaSMatthew G. Knepley 507b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 508b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 509b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr); 510b0a623aaSMatthew G. Knepley if (neighbors) { 511b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr); 512b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 513b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 514b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 515b0a623aaSMatthew G. Knepley 516b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 517b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 518b0a623aaSMatthew G. Knepley } 519b0a623aaSMatthew G. Knepley } 520b0a623aaSMatthew G. Knepley } 521b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 522b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr); 523b0a623aaSMatthew G. Knepley if (!neighbors) continue; 524b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr); 525b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 526b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 527b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 528b0a623aaSMatthew G. Knepley 529b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 530b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 531b0a623aaSMatthew G. Knepley } 532b0a623aaSMatthew G. Knepley } 533b0a623aaSMatthew G. Knepley ierr = PetscFree(adj);CHKERRQ(ierr); 534b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr); 535b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr); 53624d039d7SMichael Lange /* Add additional overlap levels */ 537be200f8dSMichael Lange for (l = 1; l < levels; l++) { 538be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 539be200f8dSMichael Lange ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr); 540be200f8dSMichael Lange /* Add next level of point donations to the label */ 541be200f8dSMichael Lange ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr); 542be200f8dSMichael Lange } 54326a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5445abbe4feSMichael Lange ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr); 545c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr); 546e540f424SMichael Lange if (flg) { 547825f8a23SLisandro Dalcin PetscViewer viewer; 548825f8a23SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr); 549825f8a23SLisandro Dalcin ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr); 550b0a623aaSMatthew G. Knepley } 551874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 552d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr); 553874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr); 554a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 555a9f1d5b2SMichael Lange for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 556e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 557a9f1d5b2SMichael Lange ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr); 558a9f1d5b2SMichael Lange ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr); 559e540f424SMichael Lange } 560e540f424SMichael Lange /* Clean up */ 5611fd9873aSMichael Lange ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr); 562b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 563b0a623aaSMatthew G. Knepley } 56470034214SMatthew G. Knepley 56524cc2ca5SMatthew G. Knepley /*@C 56624cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 56724cc2ca5SMatthew G. Knepley 568d083f849SBarry Smith Collective on dm 56924cc2ca5SMatthew G. Knepley 57024cc2ca5SMatthew G. Knepley Input Parameters: 57124cc2ca5SMatthew G. Knepley + dm - The DM 57224cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 57324cc2ca5SMatthew G. Knepley 574064ec1f3Sprj- Output Parameter: 575a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 57624cc2ca5SMatthew G. Knepley 57724cc2ca5SMatthew G. Knepley Level: developer 57824cc2ca5SMatthew G. Knepley 579dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistributeOverlap(), DMPlexDistribute() 58024cc2ca5SMatthew G. Knepley @*/ 58146f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 58246f9b1c3SMichael Lange { 58346f9b1c3SMichael Lange MPI_Comm comm; 5849852e123SBarry Smith PetscMPIInt rank, size; 58546f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 58646f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 58746f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 58846f9b1c3SMichael Lange PetscSFNode *iremote; 58946f9b1c3SMichael Lange PetscSF pointSF; 59046f9b1c3SMichael Lange const PetscInt *sharedLocal; 59146f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 59246f9b1c3SMichael Lange PetscErrorCode ierr; 59346f9b1c3SMichael Lange 59446f9b1c3SMichael Lange PetscFunctionBegin; 59546f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 59646f9b1c3SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 59746f9b1c3SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 5989852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 59946f9b1c3SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 60046f9b1c3SMichael Lange 60146f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 60246f9b1c3SMichael Lange ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr); 60346f9b1c3SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 60446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 60546f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 60646f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 60746f9b1c3SMichael Lange } 60846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 60946f9b1c3SMichael Lange ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 61046f9b1c3SMichael Lange ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 61146f9b1c3SMichael Lange 6122d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 61346f9b1c3SMichael Lange ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr); 61446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 61546f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 61646f9b1c3SMichael Lange depthShift[dim] = 0; 61746f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 61846f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 61946f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 62046f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 62146f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 62246f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 62346f9b1c3SMichael Lange } 62446f9b1c3SMichael Lange 62546f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 62646f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 62746f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 62809b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr); 62909b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr); 63046f9b1c3SMichael Lange /* First map local points to themselves */ 63146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 63246f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 63346f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 63446f9b1c3SMichael Lange point = p + depthShift[d]; 63546f9b1c3SMichael Lange ilocal[point] = point; 63646f9b1c3SMichael Lange iremote[point].index = p; 63746f9b1c3SMichael Lange iremote[point].rank = rank; 63846f9b1c3SMichael Lange depthIdx[d]++; 63946f9b1c3SMichael Lange } 64046f9b1c3SMichael Lange } 64146f9b1c3SMichael Lange 64246f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 64346f9b1c3SMichael Lange ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr); 64446f9b1c3SMichael Lange ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr); 64546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 64646f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 64746f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 64846f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 64946f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 65046f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 65146f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 65246f9b1c3SMichael Lange } 65346f9b1c3SMichael Lange } 65446f9b1c3SMichael Lange } 65546f9b1c3SMichael Lange 65646f9b1c3SMichael Lange /* Now add the incoming overlap points */ 65746f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 65846f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 65946f9b1c3SMichael Lange ilocal[point] = point; 66046f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 66146f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 66246f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 66346f9b1c3SMichael Lange } 66415fff7beSMatthew G. Knepley ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 66546f9b1c3SMichael Lange 66646f9b1c3SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 66746f9b1c3SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr); 66846f9b1c3SMichael Lange ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr); 66946f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 67046f9b1c3SMichael Lange ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 67146f9b1c3SMichael Lange 67246f9b1c3SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 67370034214SMatthew G. Knepley PetscFunctionReturn(0); 67470034214SMatthew G. Knepley } 67570034214SMatthew G. Knepley 676a9f1d5b2SMichael Lange /*@ 677f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 678a9f1d5b2SMichael Lange 679064ec1f3Sprj- Input Parameters: 680a9f1d5b2SMichael Lange + dm - The DM 681a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 682a9f1d5b2SMichael Lange 683a9f1d5b2SMichael Lange Output Parameter: 684a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 685a9f1d5b2SMichael Lange 686412e9a14SMatthew G. Knepley Note: 687412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 688412e9a14SMatthew G. Knepley 689a9f1d5b2SMichael Lange Level: developer 690a9f1d5b2SMichael Lange 691a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap() 692a9f1d5b2SMichael Lange @*/ 693a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 694a9f1d5b2SMichael Lange { 695a9f1d5b2SMichael Lange MPI_Comm comm; 6969852e123SBarry Smith PetscMPIInt rank, size; 697412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 698412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 699412e9a14SMatthew G. Knepley PetscInt *ilocal; 700a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 701412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 702a9f1d5b2SMichael Lange const PetscSFNode *iremote; 703a9f1d5b2SMichael Lange PetscErrorCode ierr; 704a9f1d5b2SMichael Lange 705a9f1d5b2SMichael Lange PetscFunctionBegin; 706a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 707a9f1d5b2SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 708a9f1d5b2SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 7099852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 7107fab53ddSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr); 711412e9a14SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 712b2566f29SBarry Smith ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 7137fab53ddSMatthew G. Knepley if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth); 71430b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 715a9f1d5b2SMichael Lange 716a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 717a9f1d5b2SMichael Lange ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr); 718a9f1d5b2SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 7197fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 720a9f1d5b2SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 721f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 722412e9a14SMatthew G. Knepley DMPolytopeType ct; 723f0e73a3dSToby Isaac 724412e9a14SMatthew G. Knepley ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr); 725412e9a14SMatthew G. Knepley pointDepths[p].index = d; 726412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 727f0e73a3dSToby Isaac } 728412e9a14SMatthew G. Knepley } 729412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;} 730412e9a14SMatthew G. Knepley ierr = PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths);CHKERRQ(ierr); 731412e9a14SMatthew G. Knepley ierr = PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths);CHKERRQ(ierr); 732412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 733412e9a14SMatthew G. Knepley ierr = PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx);CHKERRQ(ierr); 734412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 735412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 736412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 737412e9a14SMatthew G. Knepley } else { 738412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 739412e9a14SMatthew G. Knepley } 740412e9a14SMatthew G. Knepley } 741412e9a14SMatthew G. Knepley { 742412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 743412e9a14SMatthew G. Knepley 744412e9a14SMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) */ 745412e9a14SMatthew G. Knepley depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1; 746412e9a14SMatthew G. Knepley dims[0] = dim; dims[1] = 0; dims[2] = dim-1; dims[3] = 1; 747412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 748412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 749412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 750412e9a14SMatthew G. Knepley 751412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 752412e9a14SMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && c == DM_POLYTOPE_FV_GHOST)) continue; 753412e9a14SMatthew G. Knepley ctShift[c] = shift; 754412e9a14SMatthew G. Knepley shift += ctRecv[c]; 755412e9a14SMatthew G. Knepley } 756412e9a14SMatthew G. Knepley depthShift[dep] = shift; 757412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 758412e9a14SMatthew G. Knepley } 759412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 760412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c); 761412e9a14SMatthew G. Knepley 762412e9a14SMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && c != DM_POLYTOPE_FV_GHOST) { 763412e9a14SMatthew G. Knepley ctShift[c] = shift; 764412e9a14SMatthew G. Knepley shift += ctRecv[c]; 765412e9a14SMatthew G. Knepley } 766412e9a14SMatthew G. Knepley } 767412e9a14SMatthew G. Knepley } 768a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 769a9f1d5b2SMichael Lange ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 7707fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 771412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 772412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType) remoteDepths[p].rank; 7737fab53ddSMatthew G. Knepley 774412e9a14SMatthew G. Knepley if ((PetscInt) ct < 0) { 7757fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 776412e9a14SMatthew G. Knepley ++depthIdx[dep]; 777412e9a14SMatthew G. Knepley } else { 778412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 779412e9a14SMatthew G. Knepley ++ctIdx[ct]; 780412e9a14SMatthew G. Knepley } 781a9f1d5b2SMichael Lange } 782a9f1d5b2SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 783a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr); 784a9f1d5b2SMichael Lange ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr); 785a9f1d5b2SMichael Lange ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 786412e9a14SMatthew G. Knepley ierr = PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx);CHKERRQ(ierr); 78730b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 788a9f1d5b2SMichael Lange PetscFunctionReturn(0); 789a9f1d5b2SMichael Lange } 790a9f1d5b2SMichael Lange 79170034214SMatthew G. Knepley /*@ 79270034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 79370034214SMatthew G. Knepley 794d083f849SBarry Smith Collective on dm 79570034214SMatthew G. Knepley 79670034214SMatthew G. Knepley Input Parameters: 79770034214SMatthew G. Knepley + dm - The DMPlex object 79870034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 79970034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 800cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 80170034214SMatthew G. Knepley 80270034214SMatthew G. Knepley Output Parameters: 80370034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 804cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 80570034214SMatthew G. Knepley 80670034214SMatthew G. Knepley Level: developer 80770034214SMatthew G. Knepley 80870034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData() 80970034214SMatthew G. Knepley @*/ 81070034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 81170034214SMatthew G. Knepley { 81270034214SMatthew G. Knepley PetscSF fieldSF; 81370034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 81470034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 81570034214SMatthew G. Knepley PetscErrorCode ierr; 81670034214SMatthew G. Knepley 81770034214SMatthew G. Knepley PetscFunctionBegin; 81870034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 81970034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 82070034214SMatthew G. Knepley 82170034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 82270034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 82370034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 82470034214SMatthew G. Knepley 82570034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 82670034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 82770034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8288a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 82970034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 83070034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 83170034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 83270034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 83370034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 83470034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 83570034214SMatthew G. Knepley PetscFunctionReturn(0); 83670034214SMatthew G. Knepley } 83770034214SMatthew G. Knepley 83870034214SMatthew G. Knepley /*@ 83970034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 84070034214SMatthew G. Knepley 841d083f849SBarry Smith Collective on dm 84270034214SMatthew G. Knepley 84370034214SMatthew G. Knepley Input Parameters: 84470034214SMatthew G. Knepley + dm - The DMPlex object 84570034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 84670034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 84770034214SMatthew G. Knepley - originalIS - The existing data 84870034214SMatthew G. Knepley 84970034214SMatthew G. Knepley Output Parameters: 85070034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 85170034214SMatthew G. Knepley - newIS - The new data 85270034214SMatthew G. Knepley 85370034214SMatthew G. Knepley Level: developer 85470034214SMatthew G. Knepley 85570034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData() 85670034214SMatthew G. Knepley @*/ 85770034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 85870034214SMatthew G. Knepley { 85970034214SMatthew G. Knepley PetscSF fieldSF; 86070034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 86170034214SMatthew G. Knepley const PetscInt *originalValues; 86270034214SMatthew G. Knepley PetscErrorCode ierr; 86370034214SMatthew G. Knepley 86470034214SMatthew G. Knepley PetscFunctionBegin; 86570034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 86670034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 86770034214SMatthew G. Knepley 86870034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 869854ce69bSBarry Smith ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr); 87070034214SMatthew G. Knepley 87170034214SMatthew G. Knepley ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr); 87270034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8738a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 874aaf8c182SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 875aaf8c182SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 87670034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 87770034214SMatthew G. Knepley ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr); 87870034214SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr); 87970034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 88070034214SMatthew G. Knepley PetscFunctionReturn(0); 88170034214SMatthew G. Knepley } 88270034214SMatthew G. Knepley 88370034214SMatthew G. Knepley /*@ 88470034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 88570034214SMatthew G. Knepley 886d083f849SBarry Smith Collective on dm 88770034214SMatthew G. Knepley 88870034214SMatthew G. Knepley Input Parameters: 88970034214SMatthew G. Knepley + dm - The DMPlex object 89070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 89170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 89270034214SMatthew G. Knepley . datatype - The type of data 89370034214SMatthew G. Knepley - originalData - The existing data 89470034214SMatthew G. Knepley 89570034214SMatthew G. Knepley Output Parameters: 89670034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 89770034214SMatthew G. Knepley - newData - The new data 89870034214SMatthew G. Knepley 89970034214SMatthew G. Knepley Level: developer 90070034214SMatthew G. Knepley 90170034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 90270034214SMatthew G. Knepley @*/ 90370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 90470034214SMatthew G. Knepley { 90570034214SMatthew G. Knepley PetscSF fieldSF; 90670034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 90770034214SMatthew G. Knepley PetscMPIInt dataSize; 90870034214SMatthew G. Knepley PetscErrorCode ierr; 90970034214SMatthew G. Knepley 91070034214SMatthew G. Knepley PetscFunctionBegin; 91170034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 91270034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 91370034214SMatthew G. Knepley 91470034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 91570034214SMatthew G. Knepley ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr); 91670034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 91770034214SMatthew G. Knepley 91870034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 9198a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 92070034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 92170034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 92270034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 92370034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 92470034214SMatthew G. Knepley PetscFunctionReturn(0); 92570034214SMatthew G. Knepley } 92670034214SMatthew G. Knepley 92724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 928cc71bff1SMichael Lange { 929cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 930cc71bff1SMichael Lange MPI_Comm comm; 931cc71bff1SMichael Lange PetscSF coneSF; 932cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 933ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 934cc71bff1SMichael Lange PetscBool flg; 935cc71bff1SMichael Lange PetscErrorCode ierr; 936cc71bff1SMichael Lange 937cc71bff1SMichael Lange PetscFunctionBegin; 938cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9390c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 9400c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 941cc71bff1SMichael Lange /* Distribute cone section */ 942cc71bff1SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 943cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 944cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr); 945cc71bff1SMichael Lange ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 946cc71bff1SMichael Lange ierr = DMSetUp(dmParallel);CHKERRQ(ierr); 947cc71bff1SMichael Lange { 948cc71bff1SMichael Lange PetscInt pStart, pEnd, p; 949cc71bff1SMichael Lange 950cc71bff1SMichael Lange ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 951cc71bff1SMichael Lange for (p = pStart; p < pEnd; ++p) { 952cc71bff1SMichael Lange PetscInt coneSize; 953cc71bff1SMichael Lange ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 954cc71bff1SMichael Lange pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 955cc71bff1SMichael Lange } 956cc71bff1SMichael Lange } 957cc71bff1SMichael Lange /* Communicate and renumber cones */ 958cc71bff1SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 9598a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 960cc71bff1SMichael Lange ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 961ac04eaf7SToby Isaac if (original) { 962ac04eaf7SToby Isaac PetscInt numCones; 963ac04eaf7SToby Isaac 964367003a6SStefano Zampini ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); 965367003a6SStefano Zampini ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr); 966ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr); 967367003a6SStefano Zampini } else { 968ac04eaf7SToby Isaac globCones = cones; 969ac04eaf7SToby Isaac } 970cc71bff1SMichael Lange ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr); 971ac04eaf7SToby Isaac ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 972ac04eaf7SToby Isaac ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 973ac04eaf7SToby Isaac if (original) { 974ac04eaf7SToby Isaac ierr = PetscFree(globCones);CHKERRQ(ierr); 975ac04eaf7SToby Isaac } 976cc71bff1SMichael Lange ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 977cc71bff1SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 978*76bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 9793533c52bSMatthew G. Knepley PetscInt p; 9803533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 9813533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 982367003a6SStefano Zampini if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);} 9833533c52bSMatthew G. Knepley } 9843533c52bSMatthew G. Knepley if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 9853533c52bSMatthew G. Knepley } 986c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 987cc71bff1SMichael Lange if (flg) { 988cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 989a8c5bd36SStefano Zampini ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 990cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 991a8c5bd36SStefano Zampini ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 992cc71bff1SMichael Lange ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 993cc71bff1SMichael Lange } 994cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 995cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr); 996cc71bff1SMichael Lange ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 997cc71bff1SMichael Lange ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 998cc71bff1SMichael Lange ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 999cc71bff1SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 1000eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1001cc71bff1SMichael Lange { 1002cc71bff1SMichael Lange PetscInt pStart, pEnd; 1003cc71bff1SMichael Lange 1004cc71bff1SMichael Lange ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 1005cc71bff1SMichael Lange ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 1006cc71bff1SMichael Lange } 1007cc71bff1SMichael Lange ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr); 1008cc71bff1SMichael Lange ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr); 10091cf84007SMatthew G. Knepley { 10101cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 10111cf84007SMatthew G. Knepley 1012b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1013b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 10141cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 10151cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 10161cf84007SMatthew G. Knepley } 1017cc71bff1SMichael Lange PetscFunctionReturn(0); 1018cc71bff1SMichael Lange } 1019cc71bff1SMichael Lange 102024cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 10210df0e737SMichael Lange { 10220df0e737SMichael Lange MPI_Comm comm; 10230df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 10240df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 10250df0e737SMichael Lange PetscInt bs; 102690b157c4SStefano Zampini PetscBool isper; 10270df0e737SMichael Lange const char *name; 10280df0e737SMichael Lange const PetscReal *maxCell, *L; 10295dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 10300df0e737SMichael Lange PetscErrorCode ierr; 10310df0e737SMichael Lange 10320df0e737SMichael Lange PetscFunctionBegin; 10330df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10340c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10350df0e737SMichael Lange 10360df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10370df0e737SMichael Lange ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 10380df0e737SMichael Lange ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr); 10390df0e737SMichael Lange ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 10400df0e737SMichael Lange if (originalCoordinates) { 10418b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 10420df0e737SMichael Lange ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 10430df0e737SMichael Lange ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 10440df0e737SMichael Lange 10450df0e737SMichael Lange ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 10460df0e737SMichael Lange ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr); 10470df0e737SMichael Lange ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 10480df0e737SMichael Lange ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 10490df0e737SMichael Lange ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 10500df0e737SMichael Lange } 105190b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 105290b157c4SStefano Zampini ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr); 10530df0e737SMichael Lange PetscFunctionReturn(0); 10540df0e737SMichael Lange } 10550df0e737SMichael Lange 105624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 10570df0e737SMichael Lange { 1058df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 10590df0e737SMichael Lange MPI_Comm comm; 10607980c9d4SMatthew G. Knepley DMLabel depthLabel; 10610df0e737SMichael Lange PetscMPIInt rank; 10627980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1063df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1064df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 10650df0e737SMichael Lange PetscErrorCode ierr; 10660df0e737SMichael Lange 10670df0e737SMichael Lange PetscFunctionBegin; 10680df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10690c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10700c86c063SLisandro Dalcin 10710df0e737SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10720df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10730df0e737SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 10740df0e737SMichael Lange 1075df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 10767980c9d4SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 10777980c9d4SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 1078d67d17b1SMatthew G. Knepley if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);} 1079df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 1080b2566f29SBarry Smith ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr); 1081df0420ecSMatthew G. Knepley if (sendDepth) { 1082a7998027SVaclav Hapla ierr = DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel);CHKERRQ(ierr); 1083a7998027SVaclav Hapla ierr = DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE);CHKERRQ(ierr); 1084df0420ecSMatthew G. Knepley } 1085d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 1086c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr); 1087d995df53SMatthew G. Knepley numLabels = numLocalLabels; 10880df0e737SMichael Lange ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr); 1089627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 10905d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1091bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 109283e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1093d67d17b1SMatthew G. Knepley const char *name = NULL; 10940df0e737SMichael Lange 1095d67d17b1SMatthew G. Knepley if (hasLabels) { 1096d67d17b1SMatthew G. Knepley ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr); 10970df0e737SMichael Lange /* Skip "depth" because it is recreated */ 1098d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr); 1099d67d17b1SMatthew G. Knepley ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr); 1100d67d17b1SMatthew G. Knepley } 110183e10cb3SLisandro Dalcin ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 110283e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 1103bdd2d751SMichael Lange ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr); 110483e10cb3SLisandro Dalcin if (isDepth) { 11057980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 11067980c9d4SMatthew G. Knepley PetscInt gdepth; 11077980c9d4SMatthew G. Knepley 11087980c9d4SMatthew G. Knepley ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 11097980c9d4SMatthew G. Knepley if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth); 11107980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 11117980c9d4SMatthew G. Knepley PetscBool has; 11127980c9d4SMatthew G. Knepley 11137980c9d4SMatthew G. Knepley ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr); 111483e10cb3SLisandro Dalcin if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);} 11157980c9d4SMatthew G. Knepley } 11167980c9d4SMatthew G. Knepley } 1117c58f1c22SToby Isaac ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr); 111883e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 1119d67d17b1SMatthew G. Knepley if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);} 112083e10cb3SLisandro Dalcin ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr); 1121d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr); 1122d67d17b1SMatthew G. Knepley ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr); 112308f633c4SVaclav Hapla ierr = DMLabelDestroy(&labelNew);CHKERRQ(ierr); 11240df0e737SMichael Lange } 11250df0e737SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 11260df0e737SMichael Lange PetscFunctionReturn(0); 11270df0e737SMichael Lange } 11280df0e737SMichael Lange 112924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1130a6f36705SMichael Lange { 113115078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 113215078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1133a6f36705SMichael Lange MPI_Comm comm; 1134a6f36705SMichael Lange DM refTree; 1135a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1136a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1137a6f36705SMichael Lange PetscBool flg; 1138a6f36705SMichael Lange PetscErrorCode ierr; 1139a6f36705SMichael Lange 1140a6f36705SMichael Lange PetscFunctionBegin; 1141a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11420c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 1143a6f36705SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1144a6f36705SMichael Lange 1145a6f36705SMichael Lange /* Set up tree */ 1146a6f36705SMichael Lange ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 1147a6f36705SMichael Lange ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr); 1148a6f36705SMichael Lange ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr); 1149a6f36705SMichael Lange if (origParentSection) { 1150a6f36705SMichael Lange PetscInt pStart, pEnd; 115108633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1152a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1153a6f36705SMichael Lange PetscSF parentSF; 1154a6f36705SMichael Lange 1155a6f36705SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 1156a6f36705SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr); 1157a6f36705SMichael Lange ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr); 1158a6f36705SMichael Lange ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr); 1159a6f36705SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr); 11608a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr); 1161a6f36705SMichael Lange ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr); 1162a6f36705SMichael Lange ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr); 116308633170SToby Isaac if (original) { 116408633170SToby Isaac PetscInt numParents; 116508633170SToby Isaac 116608633170SToby Isaac ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr); 116708633170SToby Isaac ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr); 116808633170SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr); 116908633170SToby Isaac } 117008633170SToby Isaac else { 117108633170SToby Isaac globParents = origParents; 117208633170SToby Isaac } 117308633170SToby Isaac ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 117408633170SToby Isaac ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 117508633170SToby Isaac if (original) { 117608633170SToby Isaac ierr = PetscFree(globParents);CHKERRQ(ierr); 117708633170SToby Isaac } 1178a6f36705SMichael Lange ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1179a6f36705SMichael Lange ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1180a6f36705SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr); 1181*76bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11824a54e071SToby Isaac PetscInt p; 11834a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 11844a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 11854a54e071SToby Isaac if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 11864a54e071SToby Isaac } 11874a54e071SToby Isaac if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11884a54e071SToby Isaac } 1189c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr); 1190a6f36705SMichael Lange if (flg) { 1191a6f36705SMichael Lange ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr); 1192a8c5bd36SStefano Zampini ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1193a6f36705SMichael Lange ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr); 1194a8c5bd36SStefano Zampini ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1195a6f36705SMichael Lange ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr); 1196a6f36705SMichael Lange } 1197a6f36705SMichael Lange ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr); 1198a6f36705SMichael Lange ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr); 1199a6f36705SMichael Lange ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr); 1200a6f36705SMichael Lange ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr); 1201a6f36705SMichael Lange } 120215078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1203a6f36705SMichael Lange PetscFunctionReturn(0); 1204a6f36705SMichael Lange } 12050df0e737SMichael Lange 120624cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 12074eca1733SMichael Lange { 12089852e123SBarry Smith PetscMPIInt rank, size; 12094eca1733SMichael Lange MPI_Comm comm; 12104eca1733SMichael Lange PetscErrorCode ierr; 12114eca1733SMichael Lange 12124eca1733SMichael Lange PetscFunctionBegin; 12134eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12140c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12154eca1733SMichael Lange 12164eca1733SMichael Lange /* Create point SF for parallel mesh */ 12174eca1733SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12184eca1733SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 12194eca1733SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 12209852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 12214eca1733SMichael Lange { 12224eca1733SMichael Lange const PetscInt *leaves; 12234eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 12244eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 12254eca1733SMichael Lange PetscInt pStart, pEnd; 12264eca1733SMichael Lange 12274eca1733SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 12284eca1733SMichael Lange ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 12294eca1733SMichael Lange ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 12304eca1733SMichael Lange for (p=0; p<numRoots; p++) { 12314eca1733SMichael Lange rowners[p].rank = -1; 12324eca1733SMichael Lange rowners[p].index = -1; 12334eca1733SMichael Lange } 12344eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12354eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12364eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12374eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 12384eca1733SMichael Lange lowners[p].rank = rank; 12394eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 12404eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 12414eca1733SMichael Lange lowners[p].rank = -2; 12424eca1733SMichael Lange lowners[p].index = -2; 12434eca1733SMichael Lange } 12444eca1733SMichael Lange } 12454eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 12464eca1733SMichael Lange rowners[p].rank = -3; 12474eca1733SMichael Lange rowners[p].index = -3; 12484eca1733SMichael Lange } 12494eca1733SMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12504eca1733SMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12514eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12524eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12534eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12544eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 12554eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 12564eca1733SMichael Lange } 12574eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 12584eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 12594eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 12604eca1733SMichael Lange if (lowners[p].rank != rank) { 12614eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 12624eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 12634eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 12644eca1733SMichael Lange ++gp; 12654eca1733SMichael Lange } 12664eca1733SMichael Lange } 12674eca1733SMichael Lange ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 12684eca1733SMichael Lange ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 12694eca1733SMichael Lange ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr); 12704eca1733SMichael Lange } 12711cf84007SMatthew G. Knepley { 12721cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 12731cf84007SMatthew G. Knepley 1274b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1275b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 12761cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 12771cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 12781cf84007SMatthew G. Knepley } 12794eca1733SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12804eca1733SMichael Lange PetscFunctionReturn(0); 12814eca1733SMichael Lange } 12824eca1733SMichael Lange 128398ba2d7fSLawrence Mitchell /*@ 128498ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 128598ba2d7fSLawrence Mitchell 128698ba2d7fSLawrence Mitchell Input Parameters: 128798ba2d7fSLawrence Mitchell + dm - The DMPlex object 128898ba2d7fSLawrence Mitchell - flg - Balance the partition? 128998ba2d7fSLawrence Mitchell 129098ba2d7fSLawrence Mitchell Level: intermediate 129198ba2d7fSLawrence Mitchell 129298ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance() 129398ba2d7fSLawrence Mitchell @*/ 129498ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 129598ba2d7fSLawrence Mitchell { 129698ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 129798ba2d7fSLawrence Mitchell 129898ba2d7fSLawrence Mitchell PetscFunctionBegin; 129998ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 130098ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 130198ba2d7fSLawrence Mitchell } 130298ba2d7fSLawrence Mitchell 130398ba2d7fSLawrence Mitchell /*@ 130498ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 130598ba2d7fSLawrence Mitchell 130698ba2d7fSLawrence Mitchell Input Parameter: 1307a2b725a8SWilliam Gropp . dm - The DMPlex object 130898ba2d7fSLawrence Mitchell 130998ba2d7fSLawrence Mitchell Output Parameter: 1310a2b725a8SWilliam Gropp . flg - Balance the partition? 131198ba2d7fSLawrence Mitchell 131298ba2d7fSLawrence Mitchell Level: intermediate 131398ba2d7fSLawrence Mitchell 131498ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance() 131598ba2d7fSLawrence Mitchell @*/ 131698ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 131798ba2d7fSLawrence Mitchell { 131898ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 131998ba2d7fSLawrence Mitchell 132098ba2d7fSLawrence Mitchell PetscFunctionBegin; 132198ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1322534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 132398ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 132498ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 132598ba2d7fSLawrence Mitchell } 132698ba2d7fSLawrence Mitchell 1327fc02256fSLawrence Mitchell typedef struct { 1328fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1329fc02256fSLawrence Mitchell } Petsc3Int; 1330fc02256fSLawrence Mitchell 1331fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 1332fc02256fSLawrence Mitchell static void MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) 1333fc02256fSLawrence Mitchell { 1334fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1335fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1336fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1337fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1338fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1339fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1340fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1341fc02256fSLawrence Mitchell a[i].index = b[i].index; 1342fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1343fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1344fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1345fc02256fSLawrence Mitchell a[i].index = b[i].index; 1346fc02256fSLawrence Mitchell } 1347fc02256fSLawrence Mitchell } 1348fc02256fSLawrence Mitchell } 1349fc02256fSLawrence Mitchell } 1350fc02256fSLawrence Mitchell 1351f5bf2dbfSMichael Lange /*@C 1352a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1353f5bf2dbfSMichael Lange 1354064ec1f3Sprj- Input Parameters: 1355f5bf2dbfSMichael Lange + dm - The source DMPlex object 1356f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 13571627f6ccSMichael Lange . ownership - Flag causing a vote to determine point ownership 1358f5bf2dbfSMichael Lange 1359f5bf2dbfSMichael Lange Output Parameter: 1360f5bf2dbfSMichael Lange - pointSF - The star forest describing the point overlap in the remapped DM 1361f5bf2dbfSMichael Lange 13623618482eSVaclav Hapla Notes: 13633618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 13643618482eSVaclav Hapla 1365f5bf2dbfSMichael Lange Level: developer 1366f5bf2dbfSMichael Lange 1367f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 1368f5bf2dbfSMichael Lange @*/ 1369f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1370f5bf2dbfSMichael Lange { 137123193802SMatthew G. Knepley PetscMPIInt rank, size; 13721627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1373f5bf2dbfSMichael Lange PetscInt *pointLocal; 1374f5bf2dbfSMichael Lange const PetscInt *leaves; 1375f5bf2dbfSMichael Lange const PetscSFNode *roots; 1376f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 137723193802SMatthew G. Knepley Vec shifts; 1378cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 137923193802SMatthew G. Knepley const PetscScalar *shift = NULL; 138023193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 138198ba2d7fSLawrence Mitchell PetscBool balance; 1382f5bf2dbfSMichael Lange PetscErrorCode ierr; 1383f5bf2dbfSMichael Lange 1384f5bf2dbfSMichael Lange PetscFunctionBegin; 1385f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1386f5bf2dbfSMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 1387ab0bc224SMatthew G. Knepley ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 138830b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1389f5bf2dbfSMichael Lange 139098ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 1391f5bf2dbfSMichael Lange ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr); 1392f5bf2dbfSMichael Lange ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr); 1393f5bf2dbfSMichael Lange if (ownership) { 1394fc02256fSLawrence Mitchell MPI_Op op; 1395fc02256fSLawrence Mitchell MPI_Datatype datatype; 1396fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 139723193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 139898ba2d7fSLawrence Mitchell if (balance) { 139923193802SMatthew G. Knepley PetscRandom r; 140023193802SMatthew G. Knepley 140123193802SMatthew G. Knepley ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr); 1402cae3e4f3SLawrence Mitchell ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr); 140323193802SMatthew G. Knepley ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr); 140423193802SMatthew G. Knepley ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr); 140523193802SMatthew G. Knepley ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr); 140623193802SMatthew G. Knepley ierr = VecSetRandom(shifts, r);CHKERRQ(ierr); 140723193802SMatthew G. Knepley ierr = PetscRandomDestroy(&r);CHKERRQ(ierr); 140823193802SMatthew G. Knepley ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr); 140923193802SMatthew G. Knepley } 141023193802SMatthew G. Knepley 1411fc02256fSLawrence Mitchell ierr = PetscMalloc1(nroots, &rootVote);CHKERRQ(ierr); 1412fc02256fSLawrence Mitchell ierr = PetscMalloc1(nleaves, &leafVote);CHKERRQ(ierr); 141323193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1414f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 141523193802SMatthew G. Knepley if (shiftDebug) { 1416e7bcd635SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr); 141723193802SMatthew G. Knepley } 1418f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1419fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 1420fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1421fc02256fSLawrence Mitchell leafVote[p].index = p; 1422f5bf2dbfSMichael Lange } 1423f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 14241627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1425fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1426fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1427fc02256fSLawrence Mitchell rootVote[p].index = -3; 1428f5bf2dbfSMichael Lange } 1429fc02256fSLawrence Mitchell ierr = MPI_Type_contiguous(3, MPIU_INT, &datatype);CHKERRQ(ierr); 1430fc02256fSLawrence Mitchell ierr = MPI_Type_commit(&datatype);CHKERRQ(ierr); 1431fc02256fSLawrence Mitchell ierr = MPI_Op_create(&MaxLocCarry, 1, &op);CHKERRQ(ierr); 1432fc02256fSLawrence Mitchell ierr = PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr); 1433fc02256fSLawrence Mitchell ierr = PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr); 1434fc02256fSLawrence Mitchell ierr = MPI_Op_free(&op);CHKERRQ(ierr); 1435fc02256fSLawrence Mitchell ierr = MPI_Type_free(&datatype);CHKERRQ(ierr); 1436c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1437fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1438fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1439c091126eSLawrence Mitchell } 1440fc02256fSLawrence Mitchell ierr = PetscFree(leafVote);CHKERRQ(ierr); 1441fc02256fSLawrence Mitchell ierr = PetscFree(rootVote);CHKERRQ(ierr); 1442f5bf2dbfSMichael Lange } else { 1443f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1444f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1445f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1446fc02256fSLawrence Mitchell } 1447f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1448f5bf2dbfSMichael Lange /* Write new local id into old location */ 1449f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 14506462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1451f5bf2dbfSMichael Lange } 1452f5bf2dbfSMichael Lange } 1453f5bf2dbfSMichael Lange } 1454f5bf2dbfSMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1455f5bf2dbfSMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1456f5bf2dbfSMichael Lange 145723193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1458b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 145923193802SMatthew G. Knepley } 14601627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr); 14611627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr); 1462f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1463b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 14643618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1465f5bf2dbfSMichael Lange pointLocal[idx] = p; 1466f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1467f5bf2dbfSMichael Lange idx++; 1468f5bf2dbfSMichael Lange } 1469f5bf2dbfSMichael Lange } 147023193802SMatthew G. Knepley if (shift) { 147123193802SMatthew G. Knepley ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr); 147223193802SMatthew G. Knepley ierr = VecDestroy(&shifts);CHKERRQ(ierr); 147323193802SMatthew G. Knepley } 147423193802SMatthew G. Knepley if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);} 1475f5bf2dbfSMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr); 14761627f6ccSMichael Lange ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr); 1477f5bf2dbfSMichael Lange ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 1478f5bf2dbfSMichael Lange ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr); 147930b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1480f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1481f5bf2dbfSMichael Lange } 1482f5bf2dbfSMichael Lange 148315078cd4SMichael Lange /*@C 148415078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 148515078cd4SMichael Lange 1486d083f849SBarry Smith Collective on dm 148783655b49SVáclav Hapla 1488064ec1f3Sprj- Input Parameters: 148915078cd4SMichael Lange + dm - The source DMPlex object 14901627f6ccSMichael Lange . sf - The star forest communication context describing the migration pattern 149115078cd4SMichael Lange 149215078cd4SMichael Lange Output Parameter: 149315078cd4SMichael Lange - targetDM - The target DMPlex object 149415078cd4SMichael Lange 1495b9f40539SMichael Lange Level: intermediate 149615078cd4SMichael Lange 149715078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 149815078cd4SMichael Lange @*/ 1499b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 150015078cd4SMichael Lange { 1501b9f40539SMichael Lange MPI_Comm comm; 1502cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1503b9f40539SMichael Lange PetscSF sfPoint; 150415078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1505ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1506b9f40539SMichael Lange PetscBool flg; 150715078cd4SMichael Lange PetscErrorCode ierr; 150815078cd4SMichael Lange 150915078cd4SMichael Lange PetscFunctionBegin; 151015078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15111b858b30SMichael Lange ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 1512b9f40539SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 151315078cd4SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 151415078cd4SMichael Lange ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr); 1515cc1750acSStefano Zampini ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 1516cc1750acSStefano Zampini ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr); 151715078cd4SMichael Lange 1518bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 1519b9f40539SMichael Lange ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 1520b9f40539SMichael Lange ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 1521bfb0467fSMichael Lange if (nroots >= 0) { 1522b9f40539SMichael Lange IS isOriginal; 1523ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1524ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1525367003a6SStefano Zampini 1526b9f40539SMichael Lange /* Get the original point numbering */ 1527b9f40539SMichael Lange ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr); 1528b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal);CHKERRQ(ierr); 1529b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr); 1530b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1531b9f40539SMichael Lange /* Convert to positive global numbers */ 1532b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1533b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 1534b9f40539SMichael Lange ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 1535b9f40539SMichael Lange ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr); 15366e0288c8SStefano Zampini ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr); 15376e0288c8SStefano Zampini ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr); 15386e0288c8SStefano Zampini ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration);CHKERRQ(ierr); 1539b9f40539SMichael Lange ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1540b9f40539SMichael Lange ierr = ISDestroy(&isOriginal);CHKERRQ(ierr); 154115078cd4SMichael Lange } else { 1542bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 154315078cd4SMichael Lange ierr = ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration);CHKERRQ(ierr); 154415078cd4SMichael Lange } 1545c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 1546b9f40539SMichael Lange if (flg) { 1547b9f40539SMichael Lange ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr); 1548b9f40539SMichael Lange ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr); 1549b9f40539SMichael Lange } 155015078cd4SMichael Lange /* Migrate DM data to target DM */ 1551ac04eaf7SToby Isaac ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 155215078cd4SMichael Lange ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr); 15530dc1530dSSander Arens ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr); 155408633170SToby Isaac ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 1555ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingDestroy(<ogOriginal);CHKERRQ(ierr); 1556302440fdSBarry Smith ierr = ISLocalToGlobalMappingDestroy(<ogMigration);CHKERRQ(ierr); 15571b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 155815078cd4SMichael Lange PetscFunctionReturn(0); 155915078cd4SMichael Lange } 156015078cd4SMichael Lange 15613b8f15a2SMatthew G. Knepley /*@C 156270034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 156370034214SMatthew G. Knepley 1564d083f849SBarry Smith Collective on dm 156570034214SMatthew G. Knepley 1566064ec1f3Sprj- Input Parameters: 156770034214SMatthew G. Knepley + dm - The original DMPlex object 156870034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 156970034214SMatthew G. Knepley 1570064ec1f3Sprj- Output Parameters: 1571f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1572f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 157370034214SMatthew G. Knepley 1574f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 157570034214SMatthew G. Knepley 1576b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 157770034214SMatthew G. Knepley representation on the mesh. 157870034214SMatthew G. Knepley 157970034214SMatthew G. Knepley Level: intermediate 158070034214SMatthew G. Knepley 1581cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexGetOverlap() 158270034214SMatthew G. Knepley @*/ 158380cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 158470034214SMatthew G. Knepley { 158570034214SMatthew G. Knepley MPI_Comm comm; 158615078cd4SMichael Lange PetscPartitioner partitioner; 1587f8987ae8SMichael Lange IS cellPart; 1588f8987ae8SMichael Lange PetscSection cellPartSection; 1589cf86098cSMatthew G. Knepley DM dmCoord; 1590f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1591874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 159298ba2d7fSLawrence Mitchell PetscBool flg, balance; 1593874ddda9SLisandro Dalcin PetscMPIInt rank, size; 159470034214SMatthew G. Knepley PetscErrorCode ierr; 159570034214SMatthew G. Knepley 159670034214SMatthew G. Knepley PetscFunctionBegin; 159770034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1598d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1599d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1600d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 160170034214SMatthew G. Knepley 16020c86c063SLisandro Dalcin if (sf) *sf = NULL; 16030c86c063SLisandro Dalcin *dmParallel = NULL; 160470034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 160570034214SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 16069852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 16070c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 160870034214SMatthew G. Knepley 16090c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 161015078cd4SMichael Lange /* Create cell partition */ 161167eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 161277623264SMatthew G. Knepley ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr); 161315078cd4SMichael Lange ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr); 16143c41b853SStefano Zampini ierr = PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart);CHKERRQ(ierr); 161530b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 1616f8987ae8SMichael Lange { 1617f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1618825f8a23SLisandro Dalcin IS is; 1619825f8a23SLisandro Dalcin PetscHSetI ht; 1620f8987ae8SMichael Lange const PetscInt *points; 16218e330a33SStefano Zampini PetscInt *iranks; 16228e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1623825f8a23SLisandro Dalcin 1624d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr); 1625825f8a23SLisandro Dalcin /* Preallocate strata */ 1626825f8a23SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 1627825f8a23SLisandro Dalcin ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1628825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 1629825f8a23SLisandro Dalcin ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1630825f8a23SLisandro Dalcin if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);} 1631825f8a23SLisandro Dalcin } 1632825f8a23SLisandro Dalcin ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr); 1633825f8a23SLisandro Dalcin ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr); 1634825f8a23SLisandro Dalcin ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr); 1635825f8a23SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 1636825f8a23SLisandro Dalcin ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr); 1637825f8a23SLisandro Dalcin ierr = PetscFree(iranks);CHKERRQ(ierr); 1638825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 1639f8987ae8SMichael Lange ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr); 1640f8987ae8SMichael Lange ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1641f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 1642f8987ae8SMichael Lange ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1643825f8a23SLisandro Dalcin if (!npoints) continue; 1644825f8a23SLisandro Dalcin ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr); 16458e330a33SStefano Zampini ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr); 1646825f8a23SLisandro Dalcin ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr); 1647825f8a23SLisandro Dalcin ierr = ISDestroy(&is);CHKERRQ(ierr); 1648f8987ae8SMichael Lange } 1649f8987ae8SMichael Lange ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr); 1650f8987ae8SMichael Lange } 165130b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 16526e203dd9SStefano Zampini 1653d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr); 1654874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr); 1655302440fdSBarry Smith ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr); 165643f7d02bSMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr); 165743f7d02bSMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 165843f7d02bSMichael Lange sfMigration = sfStratified; 165930b0ce1bSStefano Zampini ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr); 166067eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1661c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 166270034214SMatthew G. Knepley if (flg) { 1663a8c5bd36SStefano Zampini ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1664a8c5bd36SStefano Zampini ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 166570034214SMatthew G. Knepley } 1666f8987ae8SMichael Lange 166715078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 166870034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 166970034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 1670b9f40539SMichael Lange ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr); 167170034214SMatthew G. Knepley 1672a157612eSMichael Lange /* Build the point SF without overlap */ 167398ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 167498ba2d7fSLawrence Mitchell ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr); 16751627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr); 1676f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr); 1677cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr); 1678cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1679a8c5bd36SStefano Zampini if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);} 168070034214SMatthew G. Knepley 1681a157612eSMichael Lange if (overlap > 0) { 168215078cd4SMichael Lange DM dmOverlap; 168357f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 168457f290daSMatthew G. Knepley const PetscInt *oldLeaves; 168557f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 168615078cd4SMichael Lange const PetscSFNode *oldRemote; 168715078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1688524e35f8SStefano Zampini 1689a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 1690b9f40539SMichael Lange ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr); 1691a157612eSMichael Lange ierr = DMDestroy(dmParallel);CHKERRQ(ierr); 1692a157612eSMichael Lange *dmParallel = dmOverlap; 1693c389ea9fSToby Isaac if (flg) { 16943d822a50SMichael Lange ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr); 169515078cd4SMichael Lange ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr); 1696c389ea9fSToby Isaac } 169743331d4aSMichael Lange 1698f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 169957f290daSMatthew G. Knepley ierr = PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote);CHKERRQ(ierr); 170015078cd4SMichael Lange ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 170143331d4aSMichael Lange ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr); 170257f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 170357f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 170457f290daSMatthew G. Knepley if (oldLeaves) { 170573e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 170673e69a6aSMatthew G. Knepley ierr = PetscMalloc1(noldleaves, &permRemote);CHKERRQ(ierr); 170757f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 170857f290daSMatthew G. Knepley oldRemote = permRemote; 170957f290daSMatthew G. Knepley } 171015078cd4SMichael Lange ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 171115078cd4SMichael Lange ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 171257f290daSMatthew G. Knepley if (oldLeaves) {ierr = PetscFree(oldRemote);CHKERRQ(ierr);} 171315078cd4SMichael Lange ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr); 171415078cd4SMichael Lange ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 171515078cd4SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1716f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 171715078cd4SMichael Lange sfMigration = sfOverlapPoint; 1718c389ea9fSToby Isaac } 1719bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 1720f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr); 1721f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr); 17224eca1733SMichael Lange ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 17234eca1733SMichael Lange ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 1724721cbd76SMatthew G. Knepley /* Copy BC */ 1725a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); 172666fe0bfeSMatthew G. Knepley /* Create sfNatural */ 172766fe0bfeSMatthew G. Knepley if (dm->useNatural) { 172866fe0bfeSMatthew G. Knepley PetscSection section; 172966fe0bfeSMatthew G. Knepley 173092fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 17310c1f158bSMatthew G. Knepley ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr); 17320e663481SBlaise Bourdin ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr); 173366fe0bfeSMatthew G. Knepley } 1734721cbd76SMatthew G. Knepley /* Cleanup */ 1735f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 1736f8987ae8SMichael Lange else {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);} 1737f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 173870034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 173970034214SMatthew G. Knepley PetscFunctionReturn(0); 174070034214SMatthew G. Knepley } 1741a157612eSMichael Lange 1742a157612eSMichael Lange /*@C 174324cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1744a157612eSMichael Lange 1745d083f849SBarry Smith Collective on dm 1746a157612eSMichael Lange 1747064ec1f3Sprj- Input Parameters: 1748064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 174957fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1750a157612eSMichael Lange 1751064ec1f3Sprj- Output Parameters: 1752a157612eSMichael Lange + sf - The PetscSF used for point distribution 1753a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1754a157612eSMichael Lange 1755dccdeccaSVaclav Hapla Notes: 1756dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1757a157612eSMichael Lange 1758b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1759a157612eSMichael Lange representation on the mesh. 1760a157612eSMichael Lange 1761dccdeccaSVaclav Hapla Level: advanced 1762a157612eSMichael Lange 1763cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexDistribute(), DMPlexCreateOverlapLabel(), DMPlexGetOverlap() 1764a157612eSMichael Lange @*/ 1765b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1766a157612eSMichael Lange { 1767a157612eSMichael Lange MPI_Comm comm; 17683567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1769a157612eSMichael Lange PetscSection rootSection, leafSection; 1770a157612eSMichael Lange IS rootrank, leafrank; 1771cf86098cSMatthew G. Knepley DM dmCoord; 1772a9f1d5b2SMichael Lange DMLabel lblOverlap; 1773f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1774a157612eSMichael Lange PetscErrorCode ierr; 1775a157612eSMichael Lange 1776a157612eSMichael Lange PetscFunctionBegin; 1777a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 177857fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1779a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1780a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1781a157612eSMichael Lange 17820c86c063SLisandro Dalcin if (sf) *sf = NULL; 17830c86c063SLisandro Dalcin *dmOverlap = NULL; 1784a157612eSMichael Lange ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 17853567eaeeSMatthew G. Knepley ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1786a157612eSMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 17870c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1788a157612eSMichael Lange 17890c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1790a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 179167eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1792a157612eSMichael Lange ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr); 1793a157612eSMichael Lange ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr); 1794a157612eSMichael Lange ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr); 1795dccdeccaSVaclav Hapla ierr = DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr); 1796a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 1797a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr); 1798a9f1d5b2SMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr); 1799a9f1d5b2SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1800a9f1d5b2SMichael Lange sfOverlap = sfStratified; 1801a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr); 1802a9f1d5b2SMichael Lange ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr); 1803a9f1d5b2SMichael Lange 180415fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr); 180515fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr); 180615fff7beSMatthew G. Knepley ierr = ISDestroy(&rootrank);CHKERRQ(ierr); 180715fff7beSMatthew G. Knepley ierr = ISDestroy(&leafrank);CHKERRQ(ierr); 180867eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1809a157612eSMichael Lange 1810a157612eSMichael Lange /* Build the overlapping DM */ 1811a157612eSMichael Lange ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr); 1812a157612eSMichael Lange ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr); 1813a9f1d5b2SMichael Lange ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr); 1814cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 1815cb54e036SVaclav Hapla ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap; 1816f5bf2dbfSMichael Lange /* Build the new point SF */ 18171627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 1818f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr); 1819cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr); 1820cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1821f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1822a157612eSMichael Lange /* Cleanup overlap partition */ 1823a9f1d5b2SMichael Lange ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr); 1824a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 1825a9f1d5b2SMichael Lange else {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);} 18261b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1827a157612eSMichael Lange PetscFunctionReturn(0); 1828a157612eSMichael Lange } 18296462276dSToby Isaac 1830cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) 1831cb54e036SVaclav Hapla { 1832cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex*) dm->data; 1833cb54e036SVaclav Hapla 1834cb54e036SVaclav Hapla PetscFunctionBegin; 1835cb54e036SVaclav Hapla *overlap = mesh->overlap; 1836cb54e036SVaclav Hapla PetscFunctionReturn(0); 1837cb54e036SVaclav Hapla } 1838cb54e036SVaclav Hapla 1839cb54e036SVaclav Hapla /*@ 1840cb54e036SVaclav Hapla DMPlexGetOverlap - Get the DMPlex partition overlap. 1841cb54e036SVaclav Hapla 1842cb54e036SVaclav Hapla Not collective 1843cb54e036SVaclav Hapla 1844cb54e036SVaclav Hapla Input Parameter: 1845cb54e036SVaclav Hapla . dm - The DM 1846cb54e036SVaclav Hapla 1847064ec1f3Sprj- Output Parameter: 1848cb54e036SVaclav Hapla . overlap - The overlap of this DM 1849cb54e036SVaclav Hapla 1850cb54e036SVaclav Hapla Level: intermediate 1851cb54e036SVaclav Hapla 1852cb54e036SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexDistributeOverlap(), DMPlexCreateOverlapLabel() 1853cb54e036SVaclav Hapla @*/ 1854cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) 1855cb54e036SVaclav Hapla { 1856cb54e036SVaclav Hapla PetscErrorCode ierr; 1857cb54e036SVaclav Hapla 1858cb54e036SVaclav Hapla PetscFunctionBegin; 1859cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1860cb54e036SVaclav Hapla ierr = PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));CHKERRQ(ierr); 1861cb54e036SVaclav Hapla PetscFunctionReturn(0); 1862cb54e036SVaclav Hapla } 1863cb54e036SVaclav Hapla 1864cb54e036SVaclav Hapla 18656462276dSToby Isaac /*@C 18666462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 18676462276dSToby Isaac root process of the original's communicator. 18686462276dSToby Isaac 1869d083f849SBarry Smith Collective on dm 187083655b49SVáclav Hapla 1871064ec1f3Sprj- Input Parameter: 18726462276dSToby Isaac . dm - the original DMPlex object 18736462276dSToby Isaac 18746462276dSToby Isaac Output Parameters: 1875a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1876a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 18776462276dSToby Isaac 18786462276dSToby Isaac Level: intermediate 18796462276dSToby Isaac 18806462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM() 18816462276dSToby Isaac @*/ 1882a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 18836462276dSToby Isaac { 18846462276dSToby Isaac MPI_Comm comm; 18856462276dSToby Isaac PetscMPIInt size; 18866462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 18876462276dSToby Isaac PetscErrorCode ierr; 18886462276dSToby Isaac 18896462276dSToby Isaac PetscFunctionBegin; 18906462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18910c86c063SLisandro Dalcin PetscValidPointer(gatherMesh,2); 18920c86c063SLisandro Dalcin *gatherMesh = NULL; 1893a13df41bSStefano Zampini if (sf) *sf = NULL; 18946462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 18956462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 18966462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 18976462276dSToby Isaac ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr); 18986462276dSToby Isaac ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr); 18996462276dSToby Isaac ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr); 19006462276dSToby Isaac ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr); 19016462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr); 1902a13df41bSStefano Zampini ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr); 1903a13df41bSStefano Zampini 19046462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr); 19056462276dSToby Isaac ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr); 19066462276dSToby Isaac ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr); 19076462276dSToby Isaac PetscFunctionReturn(0); 19086462276dSToby Isaac } 19096462276dSToby Isaac 19106462276dSToby Isaac /*@C 19116462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 19126462276dSToby Isaac 1913d083f849SBarry Smith Collective on dm 191483655b49SVáclav Hapla 1915064ec1f3Sprj- Input Parameter: 19166462276dSToby Isaac . dm - the original DMPlex object 19176462276dSToby Isaac 19186462276dSToby Isaac Output Parameters: 1919a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1920a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 19216462276dSToby Isaac 19226462276dSToby Isaac Level: intermediate 19236462276dSToby Isaac 19246462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM() 19256462276dSToby Isaac @*/ 1926a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 19276462276dSToby Isaac { 19286462276dSToby Isaac MPI_Comm comm; 19296462276dSToby Isaac PetscMPIInt size, rank; 19306462276dSToby Isaac PetscInt pStart, pEnd, p; 19316462276dSToby Isaac PetscInt numPoints = -1; 1932a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 19336462276dSToby Isaac DM gatherDM, dmCoord; 19346462276dSToby Isaac PetscSFNode *points; 19356462276dSToby Isaac PetscErrorCode ierr; 19366462276dSToby Isaac 19376462276dSToby Isaac PetscFunctionBegin; 19386462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 19390c86c063SLisandro Dalcin PetscValidPointer(redundantMesh,2); 19400c86c063SLisandro Dalcin *redundantMesh = NULL; 19416462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 19426462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 194368dbc166SMatthew G. Knepley if (size == 1) { 194468dbc166SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 194568dbc166SMatthew G. Knepley *redundantMesh = dm; 1946a13df41bSStefano Zampini if (sf) *sf = NULL; 194768dbc166SMatthew G. Knepley PetscFunctionReturn(0); 194868dbc166SMatthew G. Knepley } 1949a13df41bSStefano Zampini ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr); 19506462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 19516462276dSToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 19526462276dSToby Isaac ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr); 19536462276dSToby Isaac numPoints = pEnd - pStart; 19546462276dSToby Isaac ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr); 19556462276dSToby Isaac ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr); 19566462276dSToby Isaac ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr); 19576462276dSToby Isaac for (p = 0; p < numPoints; p++) { 19586462276dSToby Isaac points[p].index = p; 19596462276dSToby Isaac points[p].rank = 0; 19606462276dSToby Isaac } 19616462276dSToby Isaac ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr); 19626462276dSToby Isaac ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr); 19636462276dSToby Isaac ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr); 19646462276dSToby Isaac ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr); 19656462276dSToby Isaac ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 19666462276dSToby Isaac ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr); 19676462276dSToby Isaac ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr); 19686462276dSToby Isaac if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 19696462276dSToby Isaac ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1970a13df41bSStefano Zampini if (sf) { 1971a13df41bSStefano Zampini PetscSF tsf; 1972a13df41bSStefano Zampini 1973a13df41bSStefano Zampini ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr); 1974a13df41bSStefano Zampini ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr); 1975a13df41bSStefano Zampini ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr); 1976a13df41bSStefano Zampini } 19776462276dSToby Isaac ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr); 1978a13df41bSStefano Zampini ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr); 19796462276dSToby Isaac ierr = DMDestroy(&gatherDM);CHKERRQ(ierr); 19806462276dSToby Isaac PetscFunctionReturn(0); 19816462276dSToby Isaac } 19825fa78c88SVaclav Hapla 19835fa78c88SVaclav Hapla /*@ 19845fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 19855fa78c88SVaclav Hapla 19865fa78c88SVaclav Hapla Collective 19875fa78c88SVaclav Hapla 19885fa78c88SVaclav Hapla Input Parameter: 19895fa78c88SVaclav Hapla . dm - The DM object 19905fa78c88SVaclav Hapla 19915fa78c88SVaclav Hapla Output Parameter: 19925fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 19935fa78c88SVaclav Hapla 19945fa78c88SVaclav Hapla Level: intermediate 19955fa78c88SVaclav Hapla 19965fa78c88SVaclav Hapla Notes: 19975fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 19985fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 19995fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 20005fa78c88SVaclav Hapla 20015fa78c88SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexGetOverlap(), DMPlexIsInterpolated() 20025fa78c88SVaclav Hapla @*/ 20035fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) 20045fa78c88SVaclav Hapla { 20055fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 20065fa78c88SVaclav Hapla MPI_Comm comm; 20075fa78c88SVaclav Hapla PetscErrorCode ierr; 20085fa78c88SVaclav Hapla 20095fa78c88SVaclav Hapla PetscFunctionBegin; 20105fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20115fa78c88SVaclav Hapla PetscValidPointer(distributed,2); 20125fa78c88SVaclav Hapla ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 20135fa78c88SVaclav Hapla ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 20145fa78c88SVaclav Hapla count = !!(pEnd - pStart); 20155fa78c88SVaclav Hapla ierr = MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm);CHKERRQ(ierr); 20165fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 20175fa78c88SVaclav Hapla PetscFunctionReturn(0); 20185fa78c88SVaclav Hapla } 2019