1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser() 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 393c1f0c11SLawrence Mitchell - user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser() 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 975b317d89SToby Isaac PetscValidIntPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley PetscErrorCode ierr; 10770034214SMatthew G. Knepley 10870034214SMatthew G. Knepley PetscFunctionBeginHot; 10970034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 11070034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 1114b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1124b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11370034214SMatthew G. Knepley const PetscInt *support = NULL; 11470034214SMatthew G. Knepley PetscInt supportSize, s, q; 11570034214SMatthew G. Knepley 1164b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 1174b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 11870034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 119527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 12070034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12170034214SMatthew G. Knepley } 12270034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley } 12570034214SMatthew G. Knepley *adjSize = numAdj; 12670034214SMatthew G. Knepley PetscFunctionReturn(0); 12770034214SMatthew G. Knepley } 12870034214SMatthew G. Knepley 12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 13070034214SMatthew G. Knepley { 13170034214SMatthew G. Knepley const PetscInt *support = NULL; 13270034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13370034214SMatthew G. Knepley PetscErrorCode ierr; 13470034214SMatthew G. Knepley 13570034214SMatthew G. Knepley PetscFunctionBeginHot; 13670034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 13770034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 1384b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1394b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 14070034214SMatthew G. Knepley const PetscInt *cone = NULL; 14170034214SMatthew G. Knepley PetscInt coneSize, c, q; 14270034214SMatthew G. Knepley 1434b6b44bdSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1444b6b44bdSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 14570034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 146527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14770034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 15070034214SMatthew G. Knepley } 15170034214SMatthew G. Knepley } 15270034214SMatthew G. Knepley *adjSize = numAdj; 15370034214SMatthew G. Knepley PetscFunctionReturn(0); 15470034214SMatthew G. Knepley } 15570034214SMatthew G. Knepley 15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15770034214SMatthew G. Knepley { 15870034214SMatthew G. Knepley PetscInt *star = NULL; 15970034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 16070034214SMatthew G. Knepley PetscErrorCode ierr; 16170034214SMatthew G. Knepley 16270034214SMatthew G. Knepley PetscFunctionBeginHot; 16370034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 16470034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16570034214SMatthew G. Knepley const PetscInt *closure = NULL; 16670034214SMatthew G. Knepley PetscInt closureSize, c, q; 16770034214SMatthew G. Knepley 16870034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 16970034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 170527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 17170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 17270034214SMatthew G. Knepley } 17370034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 17470034214SMatthew G. Knepley } 17570034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 17670034214SMatthew G. Knepley } 17770034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 17870034214SMatthew G. Knepley *adjSize = numAdj; 17970034214SMatthew G. Knepley PetscFunctionReturn(0); 18070034214SMatthew G. Knepley } 18170034214SMatthew G. Knepley 1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18370034214SMatthew G. Knepley { 18479bad331SMatthew G. Knepley static PetscInt asiz = 0; 1858b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1868b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1878b0b4c70SToby Isaac PetscInt maxAdjSize; 1888b0b4c70SToby Isaac PetscSection aSec = NULL; 1898b0b4c70SToby Isaac IS aIS = NULL; 1908b0b4c70SToby Isaac const PetscInt *anchors; 1913c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 19270034214SMatthew G. Knepley PetscErrorCode ierr; 19370034214SMatthew G. Knepley 19470034214SMatthew G. Knepley PetscFunctionBeginHot; 1955b317d89SToby Isaac if (useAnchors) { 196a17985deSToby Isaac ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr); 1978b0b4c70SToby Isaac if (aSec) { 1988b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 19924c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 2008b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 2018b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 2028b0b4c70SToby Isaac } 2038b0b4c70SToby Isaac } 20479bad331SMatthew G. Knepley if (!*adj) { 20524c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20679bad331SMatthew G. Knepley 20724c766afSToby Isaac ierr = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr); 20879bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 20924c766afSToby Isaac ierr = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr); 21024c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 21124c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 21224c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2138b0b4c70SToby Isaac asiz *= maxAnchors; 21424c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 21579bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 21679bad331SMatthew G. Knepley } 21779bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2188b0b4c70SToby Isaac maxAdjSize = *adjSize; 2193c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2203c1f0c11SLawrence Mitchell ierr = mesh->useradjacency(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr); 2213c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 22279bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 22370034214SMatthew G. Knepley } else if (useCone) { 22479bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22570034214SMatthew G. Knepley } else { 22679bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22770034214SMatthew G. Knepley } 2285b317d89SToby Isaac if (useAnchors && aSec) { 2298b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2308b0b4c70SToby Isaac PetscInt numAdj = origSize; 2318b0b4c70SToby Isaac PetscInt i = 0, j; 2328b0b4c70SToby Isaac PetscInt *orig = *adj; 2338b0b4c70SToby Isaac 2348b0b4c70SToby Isaac while (i < origSize) { 2358b0b4c70SToby Isaac PetscInt p = orig[i]; 2368b0b4c70SToby Isaac PetscInt aDof = 0; 2378b0b4c70SToby Isaac 2388b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2398b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 2408b0b4c70SToby Isaac } 2418b0b4c70SToby Isaac if (aDof) { 2428b0b4c70SToby Isaac PetscInt aOff; 2438b0b4c70SToby Isaac PetscInt s, q; 2448b0b4c70SToby Isaac 2458b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2468b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2478b0b4c70SToby Isaac } 2488b0b4c70SToby Isaac origSize--; 2498b0b4c70SToby Isaac numAdj--; 2508b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 2518b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 252527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2538b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2548b0b4c70SToby Isaac } 2558b0b4c70SToby Isaac if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 2568b0b4c70SToby Isaac } 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac else { 2598b0b4c70SToby Isaac i++; 2608b0b4c70SToby Isaac } 2618b0b4c70SToby Isaac } 2628b0b4c70SToby Isaac *adjSize = numAdj; 2638b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 2648b0b4c70SToby Isaac } 26570034214SMatthew G. Knepley PetscFunctionReturn(0); 26670034214SMatthew G. Knepley } 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley /*@ 26970034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 27070034214SMatthew G. Knepley 27170034214SMatthew G. Knepley Input Parameters: 27270034214SMatthew G. Knepley + dm - The DM object 27370034214SMatthew G. Knepley . p - The point 27470034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE 27570034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize 27670034214SMatthew G. Knepley 27770034214SMatthew G. Knepley Output Parameters: 27870034214SMatthew G. Knepley + adjSize - The number of adjacent points 27970034214SMatthew G. Knepley - adj - The adjacent points 28070034214SMatthew G. Knepley 28170034214SMatthew G. Knepley Level: advanced 28270034214SMatthew G. Knepley 28395452b02SPatrick Sanan Notes: 28495452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28570034214SMatthew G. Knepley 286b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 28770034214SMatthew G. Knepley @*/ 28870034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 28970034214SMatthew G. Knepley { 2901cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 29170034214SMatthew G. Knepley PetscErrorCode ierr; 29270034214SMatthew G. Knepley 29370034214SMatthew G. Knepley PetscFunctionBeginHot; 29470034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29570034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 29670034214SMatthew G. Knepley PetscValidPointer(adj,4); 297b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 2981cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 2991cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr); 30070034214SMatthew G. Knepley PetscFunctionReturn(0); 30170034214SMatthew G. Knepley } 30208633170SToby Isaac 303b0a623aaSMatthew G. Knepley /*@ 304b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 305b0a623aaSMatthew G. Knepley 306b0a623aaSMatthew G. Knepley Collective on DM 307b0a623aaSMatthew G. Knepley 308b0a623aaSMatthew G. Knepley Input Parameters: 309b0a623aaSMatthew G. Knepley + dm - The DM 310b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity 311b0a623aaSMatthew G. Knepley 312b0a623aaSMatthew G. Knepley Output Parameters: 313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 314b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley Level: developer 317b0a623aaSMatthew G. Knepley 318b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF() 319b0a623aaSMatthew G. Knepley @*/ 320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 321b0a623aaSMatthew G. Knepley { 322b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 323b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 324b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 325b0a623aaSMatthew G. Knepley const PetscInt *nranks; 326b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 327b0a623aaSMatthew G. Knepley PetscBT neighbors; 328b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3299852e123SBarry Smith PetscMPIInt size, proc, rank; 330b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 331b0a623aaSMatthew G. Knepley 332b0a623aaSMatthew G. Knepley PetscFunctionBegin; 333b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 334b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 335b0a623aaSMatthew G. Knepley if (processRanks) {PetscValidPointer(processRanks, 3);} 336b0a623aaSMatthew G. Knepley if (sfProcess) {PetscValidPointer(sfProcess, 4);} 3379852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 338b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 339b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr); 3409852e123SBarry Smith ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr); 3419852e123SBarry Smith ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr); 342b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 343b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr); 344b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr); 345b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 346b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 347b0a623aaSMatthew G. Knepley 348b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr); 349b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr); 350302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 351b0a623aaSMatthew G. Knepley } 352b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr); 353b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 354b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr); 355b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr); 356b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 357b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 358b0a623aaSMatthew G. Knepley 359b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr); 360b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr); 361302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 362b0a623aaSMatthew G. Knepley } 363b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr); 364b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 365b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 366b0a623aaSMatthew G. Knepley /* Calculate edges */ 367b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3689852e123SBarry Smith for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 369b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr); 370b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr); 371b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr); 3729852e123SBarry Smith for(proc = 0, n = 0; proc < size; ++proc) { 373b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 374b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 375b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 376b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 377b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 378b0a623aaSMatthew G. Knepley ++n; 379b0a623aaSMatthew G. Knepley } 380b0a623aaSMatthew G. Knepley } 381b0a623aaSMatthew G. Knepley ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr); 382b0a623aaSMatthew G. Knepley if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);} 383b0a623aaSMatthew G. Knepley else {ierr = PetscFree(ranksNew);CHKERRQ(ierr);} 384b0a623aaSMatthew G. Knepley if (sfProcess) { 385b0a623aaSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr); 386b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr); 387b0a623aaSMatthew G. Knepley ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr); 3889852e123SBarry Smith ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 389b0a623aaSMatthew G. Knepley } 390b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 391b0a623aaSMatthew G. Knepley } 392b0a623aaSMatthew G. Knepley 393b0a623aaSMatthew G. Knepley /*@ 394b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 395b0a623aaSMatthew G. Knepley 396b0a623aaSMatthew G. Knepley Collective on DM 397b0a623aaSMatthew G. Knepley 398b0a623aaSMatthew G. Knepley Input Parameter: 399b0a623aaSMatthew G. Knepley . dm - The DM 400b0a623aaSMatthew G. Knepley 401b0a623aaSMatthew G. Knepley Output Parameters: 402b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 403b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 404b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 405b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 406b0a623aaSMatthew G. Knepley 407b0a623aaSMatthew G. Knepley Level: developer 408b0a623aaSMatthew G. Knepley 409b0a623aaSMatthew G. Knepley .seealso: DMPlexCreateOverlap() 410b0a623aaSMatthew G. Knepley @*/ 411b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 412b0a623aaSMatthew G. Knepley { 413b0a623aaSMatthew G. Knepley MPI_Comm comm; 414b0a623aaSMatthew G. Knepley PetscSF sfPoint; 415b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 416b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 417b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 418b0a623aaSMatthew G. Knepley PetscMPIInt rank; 419b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 420b0a623aaSMatthew G. Knepley 421b0a623aaSMatthew G. Knepley PetscFunctionBegin; 422b0a623aaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 423b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 424b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 425b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 426b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 427b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr); 428b0a623aaSMatthew G. Knepley ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr); 429b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr); 430b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr); 431b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);} 432b0a623aaSMatthew G. Knepley ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr); 433b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 434b0a623aaSMatthew G. Knepley ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr); 435b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr); 436b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(nedges, &remoterank);CHKERRQ(ierr); 437b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 438b0a623aaSMatthew G. Knepley ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 439b0a623aaSMatthew G. Knepley ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 440b0a623aaSMatthew G. Knepley ierr = PetscFree(myrank);CHKERRQ(ierr); 441b0a623aaSMatthew G. Knepley ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr); 442b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 443b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr); 444b0a623aaSMatthew G. Knepley ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr); 445b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 446b0a623aaSMatthew G. Knepley } 447b0a623aaSMatthew G. Knepley 448278397a0SMatthew G. Knepley /*@C 449b0a623aaSMatthew G. Knepley DMPlexCreateOverlap - Compute owner information for shared points. This basically gets two-sided for an SF. 450b0a623aaSMatthew G. Knepley 451b0a623aaSMatthew G. Knepley Collective on DM 452b0a623aaSMatthew G. Knepley 453b0a623aaSMatthew G. Knepley Input Parameters: 454b0a623aaSMatthew G. Knepley + dm - The DM 45524d039d7SMichael Lange . levels - Number of overlap levels 456b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 457b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 458b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 459b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 460b0a623aaSMatthew G. Knepley 461b0a623aaSMatthew G. Knepley Output Parameters: 462a9f1d5b2SMichael Lange + ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 463b0a623aaSMatthew G. Knepley 464b0a623aaSMatthew G. Knepley Level: developer 465b0a623aaSMatthew G. Knepley 4661fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute() 467b0a623aaSMatthew G. Knepley @*/ 468a9f1d5b2SMichael Lange PetscErrorCode DMPlexCreateOverlap(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 469b0a623aaSMatthew G. Knepley { 470e540f424SMichael Lange MPI_Comm comm; 471b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 472b0a623aaSMatthew G. Knepley PetscSF sfPoint, sfProc; 473b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 474b0a623aaSMatthew G. Knepley const PetscInt *local; 4751fd9873aSMichael Lange const PetscInt *nrank, *rrank; 476b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4771fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4789852e123SBarry Smith PetscMPIInt rank, size; 47926a7d390SMatthew G. Knepley PetscBool useCone, useClosure, flg; 480b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 481b0a623aaSMatthew G. Knepley 482b0a623aaSMatthew G. Knepley PetscFunctionBegin; 483e540f424SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 4849852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 485e540f424SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 486b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 487b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 488b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr); 489b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr); 490d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr); 491b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 492b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 493b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 494b0a623aaSMatthew G. Knepley 495df20756eSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr); 496b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);} 497b0a623aaSMatthew G. Knepley } 498b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr); 499b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr); 500b0a623aaSMatthew G. Knepley /* Handle roots */ 501b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 502b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 503b0a623aaSMatthew G. Knepley 504b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 505b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 506b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr); 507b0a623aaSMatthew G. Knepley if (neighbors) { 508b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr); 509b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 510b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 511b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 512b0a623aaSMatthew G. Knepley 513b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 514b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 515b0a623aaSMatthew G. Knepley } 516b0a623aaSMatthew G. Knepley } 517b0a623aaSMatthew G. Knepley } 518b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 519b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr); 520b0a623aaSMatthew G. Knepley if (!neighbors) continue; 521b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr); 522b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 523b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 524b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 525b0a623aaSMatthew G. Knepley 526b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 527b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 528b0a623aaSMatthew G. Knepley } 529b0a623aaSMatthew G. Knepley } 530b0a623aaSMatthew G. Knepley ierr = PetscFree(adj);CHKERRQ(ierr); 531b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr); 532b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr); 53324d039d7SMichael Lange /* Add additional overlap levels */ 534be200f8dSMichael Lange for (l = 1; l < levels; l++) { 535be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 536be200f8dSMichael Lange ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr); 537be200f8dSMichael Lange /* Add next level of point donations to the label */ 538be200f8dSMichael Lange ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr); 539be200f8dSMichael Lange } 54026a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 541b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 54226a7d390SMatthew G. Knepley if (useCone || !useClosure) { 5435abbe4feSMichael Lange ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr); 54426a7d390SMatthew G. Knepley } 545c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr); 546e540f424SMichael Lange if (flg) { 547*825f8a23SLisandro Dalcin PetscViewer viewer; 548*825f8a23SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr); 549*825f8a23SLisandro Dalcin ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr); 550b0a623aaSMatthew G. Knepley } 55171a8c5fcSMichael Lange /* Make global process SF and invert sender to receiver label */ 55271a8c5fcSMichael Lange { 55371a8c5fcSMichael Lange /* Build a global process SF */ 55471a8c5fcSMichael Lange PetscSFNode *remoteProc; 5559852e123SBarry Smith ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr); 5569852e123SBarry Smith for (p = 0; p < size; ++p) { 55771a8c5fcSMichael Lange remoteProc[p].rank = p; 55871a8c5fcSMichael Lange remoteProc[p].index = rank; 55971a8c5fcSMichael Lange } 56071a8c5fcSMichael Lange ierr = PetscSFCreate(comm, &sfProc);CHKERRQ(ierr); 56171a8c5fcSMichael Lange ierr = PetscObjectSetName((PetscObject) sfProc, "Process SF");CHKERRQ(ierr); 5629852e123SBarry Smith ierr = PetscSFSetGraph(sfProc, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr); 56371a8c5fcSMichael Lange } 564d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr); 565a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, sfProc, *ovLabel);CHKERRQ(ierr); 566a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 567a9f1d5b2SMichael Lange for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 568e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 569a9f1d5b2SMichael Lange ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr); 570a9f1d5b2SMichael Lange ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr); 571e540f424SMichael Lange } 572e540f424SMichael Lange /* Clean up */ 5731fd9873aSMichael Lange ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr); 574b0a623aaSMatthew G. Knepley ierr = PetscSFDestroy(&sfProc);CHKERRQ(ierr); 575b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 576b0a623aaSMatthew G. Knepley } 57770034214SMatthew G. Knepley 57824cc2ca5SMatthew G. Knepley /*@C 57924cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 58024cc2ca5SMatthew G. Knepley 58124cc2ca5SMatthew G. Knepley Collective on DM 58224cc2ca5SMatthew G. Knepley 58324cc2ca5SMatthew G. Knepley Input Parameters: 58424cc2ca5SMatthew G. Knepley + dm - The DM 58524cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 58624cc2ca5SMatthew G. Knepley 58724cc2ca5SMatthew G. Knepley Output Parameters: 58824cc2ca5SMatthew G. Knepley + migrationSF - An SF that maps original points in old locations to points in new locations 58924cc2ca5SMatthew G. Knepley 59024cc2ca5SMatthew G. Knepley Level: developer 59124cc2ca5SMatthew G. Knepley 59224cc2ca5SMatthew G. Knepley .seealso: DMPlexCreateOverlap(), DMPlexDistribute() 59324cc2ca5SMatthew G. Knepley @*/ 59446f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 59546f9b1c3SMichael Lange { 59646f9b1c3SMichael Lange MPI_Comm comm; 5979852e123SBarry Smith PetscMPIInt rank, size; 59846f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 59946f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 60046f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 60146f9b1c3SMichael Lange PetscSFNode *iremote; 60246f9b1c3SMichael Lange PetscSF pointSF; 60346f9b1c3SMichael Lange const PetscInt *sharedLocal; 60446f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 60546f9b1c3SMichael Lange PetscErrorCode ierr; 60646f9b1c3SMichael Lange 60746f9b1c3SMichael Lange PetscFunctionBegin; 60846f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 60946f9b1c3SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 61046f9b1c3SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 6119852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 61246f9b1c3SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 61346f9b1c3SMichael Lange 61446f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 61546f9b1c3SMichael Lange ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr); 61646f9b1c3SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 61746f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 61846f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 61946f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 62046f9b1c3SMichael Lange } 62146f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 62246f9b1c3SMichael Lange ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 62346f9b1c3SMichael Lange ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 62446f9b1c3SMichael Lange 62546f9b1c3SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 62646f9b1c3SMichael Lange ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr); 62746f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 62846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 62946f9b1c3SMichael Lange depthShift[dim] = 0; 63046f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 63146f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 63246f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 63346f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 63446f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 63546f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 63646f9b1c3SMichael Lange } 63746f9b1c3SMichael Lange 63846f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 63946f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 64046f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 64109b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr); 64209b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr); 64346f9b1c3SMichael Lange /* First map local points to themselves */ 64446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 64546f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 64646f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 64746f9b1c3SMichael Lange point = p + depthShift[d]; 64846f9b1c3SMichael Lange ilocal[point] = point; 64946f9b1c3SMichael Lange iremote[point].index = p; 65046f9b1c3SMichael Lange iremote[point].rank = rank; 65146f9b1c3SMichael Lange depthIdx[d]++; 65246f9b1c3SMichael Lange } 65346f9b1c3SMichael Lange } 65446f9b1c3SMichael Lange 65546f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 65646f9b1c3SMichael Lange ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr); 65746f9b1c3SMichael Lange ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr); 65846f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 65946f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 66046f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 66146f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 66246f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 66346f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 66446f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 66546f9b1c3SMichael Lange } 66646f9b1c3SMichael Lange } 66746f9b1c3SMichael Lange } 66846f9b1c3SMichael Lange 66946f9b1c3SMichael Lange /* Now add the incoming overlap points */ 67046f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 67146f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 67246f9b1c3SMichael Lange ilocal[point] = point; 67346f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 67446f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 67546f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 67646f9b1c3SMichael Lange } 67715fff7beSMatthew G. Knepley ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 67846f9b1c3SMichael Lange 67946f9b1c3SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 68046f9b1c3SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr); 68146f9b1c3SMichael Lange ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr); 68246f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 68346f9b1c3SMichael Lange ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 68446f9b1c3SMichael Lange 68546f9b1c3SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 68670034214SMatthew G. Knepley PetscFunctionReturn(0); 68770034214SMatthew G. Knepley } 68870034214SMatthew G. Knepley 689a9f1d5b2SMichael Lange /*@ 690f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 691a9f1d5b2SMichael Lange 692a9f1d5b2SMichael Lange Input Parameter: 693a9f1d5b2SMichael Lange + dm - The DM 694a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 695a9f1d5b2SMichael Lange 696a9f1d5b2SMichael Lange Output Parameter: 697a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 698a9f1d5b2SMichael Lange 699a9f1d5b2SMichael Lange Level: developer 700a9f1d5b2SMichael Lange 701a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap() 702a9f1d5b2SMichael Lange @*/ 703a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 704a9f1d5b2SMichael Lange { 705a9f1d5b2SMichael Lange MPI_Comm comm; 7069852e123SBarry Smith PetscMPIInt rank, size; 7077fab53ddSMatthew G. Knepley PetscInt d, ldepth, depth, p, pStart, pEnd, nroots, nleaves; 708a9f1d5b2SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 709a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 710f0e73a3dSToby Isaac PetscInt hybEnd[4]; 711a9f1d5b2SMichael Lange const PetscSFNode *iremote; 712a9f1d5b2SMichael Lange PetscErrorCode ierr; 713a9f1d5b2SMichael Lange 714a9f1d5b2SMichael Lange PetscFunctionBegin; 715a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 716a9f1d5b2SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 717a9f1d5b2SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 7189852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 7197fab53ddSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr); 720b2566f29SBarry Smith ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 7217fab53ddSMatthew G. Knepley if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth); 722a9f1d5b2SMichael Lange 723a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 724a9f1d5b2SMichael Lange ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr); 725a9f1d5b2SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 726f0e73a3dSToby Isaac ierr = DMPlexGetHybridBounds(dm,&hybEnd[depth],&hybEnd[depth-1],&hybEnd[1],&hybEnd[0]);CHKERRQ(ierr); 7277fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 728a9f1d5b2SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 729f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 730f0e73a3dSToby Isaac if (hybEnd[d] >= 0 && p >= hybEnd[d]) { /* put in a separate value for hybrid points */ 731f0e73a3dSToby Isaac pointDepths[p] = 2 * d; 732f0e73a3dSToby Isaac } else { 733f0e73a3dSToby Isaac pointDepths[p] = 2 * d + 1; 734f0e73a3dSToby Isaac } 735f0e73a3dSToby Isaac } 736a9f1d5b2SMichael Lange } 7377fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1; 738a9f1d5b2SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 739a9f1d5b2SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 740a9f1d5b2SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 741f0e73a3dSToby Isaac ierr = PetscMalloc3(2*(depth+1), &depthRecv, 2*(depth+1), &depthShift, 2*(depth+1), &depthIdx);CHKERRQ(ierr); 742f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) depthRecv[d] = 0; 7437fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++; 744f0e73a3dSToby Isaac depthShift[2*depth+1] = 0; 745f0e73a3dSToby Isaac for (d = 0; d < 2*depth+1; ++d) depthShift[d] = depthRecv[2 * depth + 1]; 746f0e73a3dSToby Isaac for (d = 0; d < 2*depth; ++d) depthShift[d] += depthRecv[2 * depth]; 747f0e73a3dSToby Isaac depthShift[0] += depthRecv[1]; 748f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[1]; 749f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[0]; 750f0e73a3dSToby Isaac for (d = 2 * depth-1; d > 2; --d) { 751f0e73a3dSToby Isaac PetscInt e; 752f0e73a3dSToby Isaac 753f0e73a3dSToby Isaac for (e = d -1; e > 1; --e) depthShift[e] += depthRecv[d]; 754f0e73a3dSToby Isaac } 755f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) {depthIdx[d] = 0;} 756a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 757a9f1d5b2SMichael Lange ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 7587fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 7597fab53ddSMatthew G. Knepley const PetscInt dep = remoteDepths[p]; 7607fab53ddSMatthew G. Knepley 7617fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 7627fab53ddSMatthew G. Knepley depthIdx[dep]++; 763a9f1d5b2SMichael Lange } 764a9f1d5b2SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 765a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr); 766a9f1d5b2SMichael Lange ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr); 767a9f1d5b2SMichael Lange ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 768a9f1d5b2SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 769a9f1d5b2SMichael Lange PetscFunctionReturn(0); 770a9f1d5b2SMichael Lange } 771a9f1d5b2SMichael Lange 77270034214SMatthew G. Knepley /*@ 77370034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 77470034214SMatthew G. Knepley 77570034214SMatthew G. Knepley Collective on DM 77670034214SMatthew G. Knepley 77770034214SMatthew G. Knepley Input Parameters: 77870034214SMatthew G. Knepley + dm - The DMPlex object 77970034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 78070034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 78170034214SMatthew G. Knepley - originalVec - The existing data 78270034214SMatthew G. Knepley 78370034214SMatthew G. Knepley Output Parameters: 78470034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 78570034214SMatthew G. Knepley - newVec - The new data 78670034214SMatthew G. Knepley 78770034214SMatthew G. Knepley Level: developer 78870034214SMatthew G. Knepley 78970034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData() 79070034214SMatthew G. Knepley @*/ 79170034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 79270034214SMatthew G. Knepley { 79370034214SMatthew G. Knepley PetscSF fieldSF; 79470034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 79570034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 79670034214SMatthew G. Knepley PetscErrorCode ierr; 79770034214SMatthew G. Knepley 79870034214SMatthew G. Knepley PetscFunctionBegin; 79970034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 80070034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 80170034214SMatthew G. Knepley 80270034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 80370034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 80470034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 80570034214SMatthew G. Knepley 80670034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 80770034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 80870034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8098a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 81070034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 81170034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 81270034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 81370034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 81470034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 81570034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 81670034214SMatthew G. Knepley PetscFunctionReturn(0); 81770034214SMatthew G. Knepley } 81870034214SMatthew G. Knepley 81970034214SMatthew G. Knepley /*@ 82070034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 82170034214SMatthew G. Knepley 82270034214SMatthew G. Knepley Collective on DM 82370034214SMatthew G. Knepley 82470034214SMatthew G. Knepley Input Parameters: 82570034214SMatthew G. Knepley + dm - The DMPlex object 82670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 82770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 82870034214SMatthew G. Knepley - originalIS - The existing data 82970034214SMatthew G. Knepley 83070034214SMatthew G. Knepley Output Parameters: 83170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 83270034214SMatthew G. Knepley - newIS - The new data 83370034214SMatthew G. Knepley 83470034214SMatthew G. Knepley Level: developer 83570034214SMatthew G. Knepley 83670034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData() 83770034214SMatthew G. Knepley @*/ 83870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 83970034214SMatthew G. Knepley { 84070034214SMatthew G. Knepley PetscSF fieldSF; 84170034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 84270034214SMatthew G. Knepley const PetscInt *originalValues; 84370034214SMatthew G. Knepley PetscErrorCode ierr; 84470034214SMatthew G. Knepley 84570034214SMatthew G. Knepley PetscFunctionBegin; 84670034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 84770034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 84870034214SMatthew G. Knepley 84970034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 850854ce69bSBarry Smith ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr); 85170034214SMatthew G. Knepley 85270034214SMatthew G. Knepley ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr); 85370034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8548a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 855aaf8c182SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 856aaf8c182SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 85770034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 85870034214SMatthew G. Knepley ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr); 85970034214SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr); 86070034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 86170034214SMatthew G. Knepley PetscFunctionReturn(0); 86270034214SMatthew G. Knepley } 86370034214SMatthew G. Knepley 86470034214SMatthew G. Knepley /*@ 86570034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 86670034214SMatthew G. Knepley 86770034214SMatthew G. Knepley Collective on DM 86870034214SMatthew G. Knepley 86970034214SMatthew G. Knepley Input Parameters: 87070034214SMatthew G. Knepley + dm - The DMPlex object 87170034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 87270034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 87370034214SMatthew G. Knepley . datatype - The type of data 87470034214SMatthew G. Knepley - originalData - The existing data 87570034214SMatthew G. Knepley 87670034214SMatthew G. Knepley Output Parameters: 87770034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 87870034214SMatthew G. Knepley - newData - The new data 87970034214SMatthew G. Knepley 88070034214SMatthew G. Knepley Level: developer 88170034214SMatthew G. Knepley 88270034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 88370034214SMatthew G. Knepley @*/ 88470034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 88570034214SMatthew G. Knepley { 88670034214SMatthew G. Knepley PetscSF fieldSF; 88770034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 88870034214SMatthew G. Knepley PetscMPIInt dataSize; 88970034214SMatthew G. Knepley PetscErrorCode ierr; 89070034214SMatthew G. Knepley 89170034214SMatthew G. Knepley PetscFunctionBegin; 89270034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 89370034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 89470034214SMatthew G. Knepley 89570034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 89670034214SMatthew G. Knepley ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr); 89770034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 89870034214SMatthew G. Knepley 89970034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 9008a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 90170034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 90270034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 90370034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 90470034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 90570034214SMatthew G. Knepley PetscFunctionReturn(0); 90670034214SMatthew G. Knepley } 90770034214SMatthew G. Knepley 90824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 909cc71bff1SMichael Lange { 910cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 911cc71bff1SMichael Lange MPI_Comm comm; 912cc71bff1SMichael Lange PetscSF coneSF; 913cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 914ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 915cc71bff1SMichael Lange PetscBool flg; 916cc71bff1SMichael Lange PetscErrorCode ierr; 917cc71bff1SMichael Lange 918cc71bff1SMichael Lange PetscFunctionBegin; 919cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9200c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 921cc71bff1SMichael Lange 9220c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 923cc71bff1SMichael Lange /* Distribute cone section */ 924cc71bff1SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 925cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 926cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr); 927cc71bff1SMichael Lange ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 928cc71bff1SMichael Lange ierr = DMSetUp(dmParallel);CHKERRQ(ierr); 929cc71bff1SMichael Lange { 930cc71bff1SMichael Lange PetscInt pStart, pEnd, p; 931cc71bff1SMichael Lange 932cc71bff1SMichael Lange ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 933cc71bff1SMichael Lange for (p = pStart; p < pEnd; ++p) { 934cc71bff1SMichael Lange PetscInt coneSize; 935cc71bff1SMichael Lange ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 936cc71bff1SMichael Lange pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 937cc71bff1SMichael Lange } 938cc71bff1SMichael Lange } 939cc71bff1SMichael Lange /* Communicate and renumber cones */ 940cc71bff1SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 9418a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 942cc71bff1SMichael Lange ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 943ac04eaf7SToby Isaac if (original) { 944ac04eaf7SToby Isaac PetscInt numCones; 945ac04eaf7SToby Isaac 946367003a6SStefano Zampini ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); 947367003a6SStefano Zampini ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr); 948ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr); 949367003a6SStefano Zampini } else { 950ac04eaf7SToby Isaac globCones = cones; 951ac04eaf7SToby Isaac } 952cc71bff1SMichael Lange ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr); 953ac04eaf7SToby Isaac ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 954ac04eaf7SToby Isaac ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 955ac04eaf7SToby Isaac if (original) { 956ac04eaf7SToby Isaac ierr = PetscFree(globCones);CHKERRQ(ierr); 957ac04eaf7SToby Isaac } 958cc71bff1SMichael Lange ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 959cc71bff1SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 96062795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 9613533c52bSMatthew G. Knepley { 9623533c52bSMatthew G. Knepley PetscInt p; 9633533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 9643533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 965367003a6SStefano Zampini if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);} 9663533c52bSMatthew G. Knepley } 9673533c52bSMatthew G. Knepley if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 9683533c52bSMatthew G. Knepley } 9693533c52bSMatthew G. Knepley #endif 970c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 971cc71bff1SMichael Lange if (flg) { 972cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 973cc71bff1SMichael Lange ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 974cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 975cc71bff1SMichael Lange ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 976cc71bff1SMichael Lange ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 977cc71bff1SMichael Lange } 978cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 979cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr); 980cc71bff1SMichael Lange ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 981cc71bff1SMichael Lange ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 982cc71bff1SMichael Lange ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 983cc71bff1SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 984eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 985cc71bff1SMichael Lange { 986cc71bff1SMichael Lange PetscInt pStart, pEnd; 987cc71bff1SMichael Lange 988cc71bff1SMichael Lange ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 989cc71bff1SMichael Lange ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 990cc71bff1SMichael Lange } 991cc71bff1SMichael Lange ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr); 992cc71bff1SMichael Lange ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr); 9931cf84007SMatthew G. Knepley { 9941cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 9951cf84007SMatthew G. Knepley 996b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 997b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 9981cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 9991cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 10001cf84007SMatthew G. Knepley } 1001cc71bff1SMichael Lange PetscFunctionReturn(0); 1002cc71bff1SMichael Lange } 1003cc71bff1SMichael Lange 100424cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 10050df0e737SMichael Lange { 10060df0e737SMichael Lange MPI_Comm comm; 10070df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 10080df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 10090df0e737SMichael Lange PetscInt bs; 101090b157c4SStefano Zampini PetscBool isper; 10110df0e737SMichael Lange const char *name; 10120df0e737SMichael Lange const PetscReal *maxCell, *L; 10135dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 10140df0e737SMichael Lange PetscErrorCode ierr; 10150df0e737SMichael Lange 10160df0e737SMichael Lange PetscFunctionBegin; 10170df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10180c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10190df0e737SMichael Lange 10200df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10210df0e737SMichael Lange ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 10220df0e737SMichael Lange ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr); 10230df0e737SMichael Lange ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 10240df0e737SMichael Lange if (originalCoordinates) { 10258b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 10260df0e737SMichael Lange ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 10270df0e737SMichael Lange ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 10280df0e737SMichael Lange 10290df0e737SMichael Lange ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 10300df0e737SMichael Lange ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr); 10310df0e737SMichael Lange ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 10320df0e737SMichael Lange ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 10330df0e737SMichael Lange ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 10340df0e737SMichael Lange } 103590b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 103690b157c4SStefano Zampini ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr); 10370df0e737SMichael Lange PetscFunctionReturn(0); 10380df0e737SMichael Lange } 10390df0e737SMichael Lange 1040d995df53SMatthew G. Knepley /* Here we are assuming that process 0 always has everything */ 104124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 10420df0e737SMichael Lange { 1043df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 10440df0e737SMichael Lange MPI_Comm comm; 10457980c9d4SMatthew G. Knepley DMLabel depthLabel; 10460df0e737SMichael Lange PetscMPIInt rank; 10477980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1048df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1049df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 10500df0e737SMichael Lange PetscErrorCode ierr; 10510df0e737SMichael Lange 10520df0e737SMichael Lange PetscFunctionBegin; 10530df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10540c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10550c86c063SLisandro Dalcin 10560df0e737SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10570df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10580df0e737SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 10590df0e737SMichael Lange 1060df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 10617980c9d4SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 10627980c9d4SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 1063d67d17b1SMatthew G. Knepley if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);} 1064df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 1065b2566f29SBarry Smith ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr); 1066df0420ecSMatthew G. Knepley if (sendDepth) { 10677980c9d4SMatthew G. Knepley ierr = DMRemoveLabel(dmParallel, "depth", &depthLabel);CHKERRQ(ierr); 10687980c9d4SMatthew G. Knepley ierr = DMLabelDestroy(&depthLabel);CHKERRQ(ierr); 1069df0420ecSMatthew G. Knepley } 1070d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 1071c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr); 1072d995df53SMatthew G. Knepley numLabels = numLocalLabels; 10730df0e737SMichael Lange ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr); 1074627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 1075bdd2d751SMichael Lange for (l = numLabels-1; l >= 0; --l) { 1076bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 107783e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1078d67d17b1SMatthew G. Knepley const char *name = NULL; 10790df0e737SMichael Lange 1080d67d17b1SMatthew G. Knepley if (hasLabels) { 1081d67d17b1SMatthew G. Knepley ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr); 10820df0e737SMichael Lange /* Skip "depth" because it is recreated */ 1083d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr); 1084d67d17b1SMatthew G. Knepley ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr); 1085d67d17b1SMatthew G. Knepley } 108683e10cb3SLisandro Dalcin ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 108783e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 1088bdd2d751SMichael Lange ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr); 108983e10cb3SLisandro Dalcin if (isDepth) { 10907980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 10917980c9d4SMatthew G. Knepley PetscInt gdepth; 10927980c9d4SMatthew G. Knepley 10937980c9d4SMatthew G. Knepley ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 10947980c9d4SMatthew G. Knepley if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth); 10957980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 10967980c9d4SMatthew G. Knepley PetscBool has; 10977980c9d4SMatthew G. Knepley 10987980c9d4SMatthew G. Knepley ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr); 109983e10cb3SLisandro Dalcin if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);} 11007980c9d4SMatthew G. Knepley } 11017980c9d4SMatthew G. Knepley } 1102c58f1c22SToby Isaac ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr); 110383e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 1104d67d17b1SMatthew G. Knepley if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);} 110583e10cb3SLisandro Dalcin ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr); 1106d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr); 1107d67d17b1SMatthew G. Knepley ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr); 11080df0e737SMichael Lange } 11090df0e737SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 11100df0e737SMichael Lange PetscFunctionReturn(0); 11110df0e737SMichael Lange } 11120df0e737SMichael Lange 111324cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel) 11149734c634SMichael Lange { 11159734c634SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 11169734c634SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1117f0e73a3dSToby Isaac PetscBool *isHybrid, *isHybridParallel; 1118f0e73a3dSToby Isaac PetscInt dim, depth, d; 1119f0e73a3dSToby Isaac PetscInt pStart, pEnd, pStartP, pEndP; 11209734c634SMichael Lange PetscErrorCode ierr; 11219734c634SMichael Lange 11229734c634SMichael Lange PetscFunctionBegin; 11239734c634SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11240c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 11259734c634SMichael Lange 11269734c634SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 11279734c634SMichael Lange ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1128f0e73a3dSToby Isaac ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr); 1129f0e73a3dSToby Isaac ierr = DMPlexGetChart(dmParallel,&pStartP,&pEndP);CHKERRQ(ierr); 1130f0e73a3dSToby Isaac ierr = PetscCalloc2(pEnd-pStart,&isHybrid,pEndP-pStartP,&isHybridParallel);CHKERRQ(ierr); 1131f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1132f0e73a3dSToby Isaac PetscInt hybridMax = (depth == 1 && d == 1) ? mesh->hybridPointMax[dim] : mesh->hybridPointMax[d]; 11339734c634SMichael Lange 1134f0e73a3dSToby Isaac if (hybridMax >= 0) { 1135f0e73a3dSToby Isaac PetscInt sStart, sEnd, p; 11369734c634SMichael Lange 1137f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dm,d,&sStart,&sEnd);CHKERRQ(ierr); 1138f0e73a3dSToby Isaac for (p = hybridMax; p < sEnd; p++) isHybrid[p-pStart] = PETSC_TRUE; 11399734c634SMichael Lange } 11409734c634SMichael Lange } 1141f0e73a3dSToby Isaac ierr = PetscSFBcastBegin(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1142f0e73a3dSToby Isaac ierr = PetscSFBcastEnd(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1143f0e73a3dSToby Isaac for (d = 0; d <= dim; d++) pmesh->hybridPointMax[d] = -1; 1144f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1145f0e73a3dSToby Isaac PetscInt sStart, sEnd, p, dd; 1146f0e73a3dSToby Isaac 1147f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dmParallel,d,&sStart,&sEnd);CHKERRQ(ierr); 1148f0e73a3dSToby Isaac dd = (depth == 1 && d == 1) ? dim : d; 1149f0e73a3dSToby Isaac for (p = sStart; p < sEnd; p++) { 1150f0e73a3dSToby Isaac if (isHybridParallel[p-pStartP]) { 1151f0e73a3dSToby Isaac pmesh->hybridPointMax[dd] = p; 1152f0e73a3dSToby Isaac break; 1153f0e73a3dSToby Isaac } 1154f0e73a3dSToby Isaac } 1155f0e73a3dSToby Isaac } 1156f0e73a3dSToby Isaac ierr = PetscFree2(isHybrid,isHybridParallel);CHKERRQ(ierr); 11579734c634SMichael Lange PetscFunctionReturn(0); 11589734c634SMichael Lange } 11590df0e737SMichael Lange 116024cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1161a6f36705SMichael Lange { 116215078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 116315078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1164a6f36705SMichael Lange MPI_Comm comm; 1165a6f36705SMichael Lange DM refTree; 1166a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1167a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1168a6f36705SMichael Lange PetscBool flg; 1169a6f36705SMichael Lange PetscErrorCode ierr; 1170a6f36705SMichael Lange 1171a6f36705SMichael Lange PetscFunctionBegin; 1172a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11730c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 1174a6f36705SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1175a6f36705SMichael Lange 1176a6f36705SMichael Lange /* Set up tree */ 1177a6f36705SMichael Lange ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 1178a6f36705SMichael Lange ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr); 1179a6f36705SMichael Lange ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr); 1180a6f36705SMichael Lange if (origParentSection) { 1181a6f36705SMichael Lange PetscInt pStart, pEnd; 118208633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1183a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1184a6f36705SMichael Lange PetscSF parentSF; 1185a6f36705SMichael Lange 1186a6f36705SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 1187a6f36705SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr); 1188a6f36705SMichael Lange ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr); 1189a6f36705SMichael Lange ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr); 1190a6f36705SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr); 11918a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr); 1192a6f36705SMichael Lange ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr); 1193a6f36705SMichael Lange ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr); 119408633170SToby Isaac if (original) { 119508633170SToby Isaac PetscInt numParents; 119608633170SToby Isaac 119708633170SToby Isaac ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr); 119808633170SToby Isaac ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr); 119908633170SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr); 120008633170SToby Isaac } 120108633170SToby Isaac else { 120208633170SToby Isaac globParents = origParents; 120308633170SToby Isaac } 120408633170SToby Isaac ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 120508633170SToby Isaac ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 120608633170SToby Isaac if (original) { 120708633170SToby Isaac ierr = PetscFree(globParents);CHKERRQ(ierr); 120808633170SToby Isaac } 1209a6f36705SMichael Lange ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1210a6f36705SMichael Lange ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1211a6f36705SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr); 121262795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 12134a54e071SToby Isaac { 12144a54e071SToby Isaac PetscInt p; 12154a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 12164a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 12174a54e071SToby Isaac if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 12184a54e071SToby Isaac } 12194a54e071SToby Isaac if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 12204a54e071SToby Isaac } 12214a54e071SToby Isaac #endif 1222c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr); 1223a6f36705SMichael Lange if (flg) { 1224a6f36705SMichael Lange ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr); 1225a6f36705SMichael Lange ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1226a6f36705SMichael Lange ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr); 1227a6f36705SMichael Lange ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1228a6f36705SMichael Lange ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr); 1229a6f36705SMichael Lange } 1230a6f36705SMichael Lange ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr); 1231a6f36705SMichael Lange ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr); 1232a6f36705SMichael Lange ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr); 1233a6f36705SMichael Lange ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr); 1234a6f36705SMichael Lange } 123515078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1236a6f36705SMichael Lange PetscFunctionReturn(0); 1237a6f36705SMichael Lange } 12380df0e737SMichael Lange 123924cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 12404eca1733SMichael Lange { 12419852e123SBarry Smith PetscMPIInt rank, size; 12424eca1733SMichael Lange MPI_Comm comm; 12434eca1733SMichael Lange PetscErrorCode ierr; 12444eca1733SMichael Lange 12454eca1733SMichael Lange PetscFunctionBegin; 12464eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12470c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12484eca1733SMichael Lange 12494eca1733SMichael Lange /* Create point SF for parallel mesh */ 12504eca1733SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12514eca1733SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 12524eca1733SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 12539852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 12544eca1733SMichael Lange { 12554eca1733SMichael Lange const PetscInt *leaves; 12564eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 12574eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 12584eca1733SMichael Lange PetscInt pStart, pEnd; 12594eca1733SMichael Lange 12604eca1733SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 12614eca1733SMichael Lange ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 12624eca1733SMichael Lange ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 12634eca1733SMichael Lange for (p=0; p<numRoots; p++) { 12644eca1733SMichael Lange rowners[p].rank = -1; 12654eca1733SMichael Lange rowners[p].index = -1; 12664eca1733SMichael Lange } 12674eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12684eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12694eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12704eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 12714eca1733SMichael Lange lowners[p].rank = rank; 12724eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 12734eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 12744eca1733SMichael Lange lowners[p].rank = -2; 12754eca1733SMichael Lange lowners[p].index = -2; 12764eca1733SMichael Lange } 12774eca1733SMichael Lange } 12784eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 12794eca1733SMichael Lange rowners[p].rank = -3; 12804eca1733SMichael Lange rowners[p].index = -3; 12814eca1733SMichael Lange } 12824eca1733SMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12834eca1733SMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12844eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12854eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12864eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12874eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 12884eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 12894eca1733SMichael Lange } 12904eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 12914eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 12924eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 12934eca1733SMichael Lange if (lowners[p].rank != rank) { 12944eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 12954eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 12964eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 12974eca1733SMichael Lange ++gp; 12984eca1733SMichael Lange } 12994eca1733SMichael Lange } 13004eca1733SMichael Lange ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 13014eca1733SMichael Lange ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 13024eca1733SMichael Lange ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr); 13034eca1733SMichael Lange } 13041cf84007SMatthew G. Knepley { 13051cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 13061cf84007SMatthew G. Knepley 1307b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1308b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 13091cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 13101cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 13111cf84007SMatthew G. Knepley } 13124eca1733SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 13134eca1733SMichael Lange PetscFunctionReturn(0); 13144eca1733SMichael Lange } 13154eca1733SMichael Lange 131698ba2d7fSLawrence Mitchell /*@ 131798ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 131898ba2d7fSLawrence Mitchell 131998ba2d7fSLawrence Mitchell Input Parameters: 132098ba2d7fSLawrence Mitchell + dm - The DMPlex object 132198ba2d7fSLawrence Mitchell - flg - Balance the partition? 132298ba2d7fSLawrence Mitchell 132398ba2d7fSLawrence Mitchell Level: intermediate 132498ba2d7fSLawrence Mitchell 132598ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance() 132698ba2d7fSLawrence Mitchell @*/ 132798ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 132898ba2d7fSLawrence Mitchell { 132998ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 133098ba2d7fSLawrence Mitchell 133198ba2d7fSLawrence Mitchell PetscFunctionBegin; 133298ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 133398ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 133498ba2d7fSLawrence Mitchell } 133598ba2d7fSLawrence Mitchell 133698ba2d7fSLawrence Mitchell /*@ 133798ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 133898ba2d7fSLawrence Mitchell 133998ba2d7fSLawrence Mitchell Input Parameter: 134098ba2d7fSLawrence Mitchell + dm - The DMPlex object 134198ba2d7fSLawrence Mitchell 134298ba2d7fSLawrence Mitchell Output Parameter: 134398ba2d7fSLawrence Mitchell + flg - Balance the partition? 134498ba2d7fSLawrence Mitchell 134598ba2d7fSLawrence Mitchell Level: intermediate 134698ba2d7fSLawrence Mitchell 134798ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance() 134898ba2d7fSLawrence Mitchell @*/ 134998ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 135098ba2d7fSLawrence Mitchell { 135198ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 135298ba2d7fSLawrence Mitchell 135398ba2d7fSLawrence Mitchell PetscFunctionBegin; 135498ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 135598ba2d7fSLawrence Mitchell PetscValidIntPointer(flg, 2); 135698ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 135798ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 135898ba2d7fSLawrence Mitchell } 135998ba2d7fSLawrence Mitchell 1360f5bf2dbfSMichael Lange /*@C 1361f5bf2dbfSMichael Lange DMPlexDerivePointSF - Build a point SF from an SF describing a point migration 1362f5bf2dbfSMichael Lange 1363f5bf2dbfSMichael Lange Input Parameter: 1364f5bf2dbfSMichael Lange + dm - The source DMPlex object 1365f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 13661627f6ccSMichael Lange . ownership - Flag causing a vote to determine point ownership 1367f5bf2dbfSMichael Lange 1368f5bf2dbfSMichael Lange Output Parameter: 1369f5bf2dbfSMichael Lange - pointSF - The star forest describing the point overlap in the remapped DM 1370f5bf2dbfSMichael Lange 1371f5bf2dbfSMichael Lange Level: developer 1372f5bf2dbfSMichael Lange 1373f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 1374f5bf2dbfSMichael Lange @*/ 1375f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1376f5bf2dbfSMichael Lange { 137723193802SMatthew G. Knepley PetscMPIInt rank, size; 13781627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1379f5bf2dbfSMichael Lange PetscInt *pointLocal; 1380f5bf2dbfSMichael Lange const PetscInt *leaves; 1381f5bf2dbfSMichael Lange const PetscSFNode *roots; 1382f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 138323193802SMatthew G. Knepley Vec shifts; 1384cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 138523193802SMatthew G. Knepley const PetscScalar *shift = NULL; 138623193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 138798ba2d7fSLawrence Mitchell PetscBool balance; 1388f5bf2dbfSMichael Lange PetscErrorCode ierr; 1389f5bf2dbfSMichael Lange 1390f5bf2dbfSMichael Lange PetscFunctionBegin; 1391f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1392f5bf2dbfSMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 1393ab0bc224SMatthew G. Knepley ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 1394f5bf2dbfSMichael Lange 139598ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 1396f5bf2dbfSMichael Lange ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr); 1397f5bf2dbfSMichael Lange ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr); 1398f5bf2dbfSMichael Lange if (ownership) { 139923193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 140098ba2d7fSLawrence Mitchell if (balance) { 140123193802SMatthew G. Knepley PetscRandom r; 140223193802SMatthew G. Knepley 140323193802SMatthew G. Knepley ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr); 1404cae3e4f3SLawrence Mitchell ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr); 140523193802SMatthew G. Knepley ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr); 140623193802SMatthew G. Knepley ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr); 140723193802SMatthew G. Knepley ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr); 140823193802SMatthew G. Knepley ierr = VecSetRandom(shifts, r);CHKERRQ(ierr); 140923193802SMatthew G. Knepley ierr = PetscRandomDestroy(&r);CHKERRQ(ierr); 141023193802SMatthew G. Knepley ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr); 141123193802SMatthew G. Knepley } 141223193802SMatthew G. Knepley 141323193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1414f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 141523193802SMatthew G. Knepley if (shiftDebug) { 1416e7bcd635SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr); 141723193802SMatthew G. Knepley } 1418f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1419e7bcd635SMatthew G. Knepley leafNodes[p].rank = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 142043f7d02bSMichael Lange leafNodes[p].index = p; 1421f5bf2dbfSMichael Lange } 1422f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 14231627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1424f5bf2dbfSMichael Lange rootNodes[p].rank = -3; 1425f5bf2dbfSMichael Lange rootNodes[p].index = -3; 1426f5bf2dbfSMichael Lange } 1427f5bf2dbfSMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 1428f5bf2dbfSMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 142998ba2d7fSLawrence Mitchell if (balance) { 1430c091126eSLawrence Mitchell /* We've voted, now we need to get the rank. When we're balancing the partition, the "rank" in rootNotes is not 1431c091126eSLawrence Mitchell * the rank but rather (rank + random)%size. So we do another reduction, voting the same way, but sending the 1432c091126eSLawrence Mitchell * rank instead of the index. */ 1433c091126eSLawrence Mitchell PetscSFNode *rootRanks = NULL; 1434c091126eSLawrence Mitchell ierr = PetscMalloc1(nroots, &rootRanks);CHKERRQ(ierr); 1435c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1436c091126eSLawrence Mitchell rootRanks[p].rank = -3; 1437c091126eSLawrence Mitchell rootRanks[p].index = -3; 1438c091126eSLawrence Mitchell } 1439c091126eSLawrence Mitchell for (p = 0; p < nleaves; p++) leafNodes[p].index = rank; 1440c091126eSLawrence Mitchell ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr); 1441c091126eSLawrence Mitchell ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr); 1442c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) rootNodes[p].rank = rootRanks[p].index; 1443c091126eSLawrence Mitchell ierr = PetscFree(rootRanks);CHKERRQ(ierr); 1444c091126eSLawrence Mitchell } 1445f5bf2dbfSMichael Lange } else { 1446f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1447f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1448f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1449f5bf2dbfSMichael Lange }; 1450f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1451f5bf2dbfSMichael Lange /* Write new local id into old location */ 1452f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 14536462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1454f5bf2dbfSMichael Lange } 1455f5bf2dbfSMichael Lange } 1456f5bf2dbfSMichael Lange } 1457f5bf2dbfSMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1458f5bf2dbfSMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1459f5bf2dbfSMichael Lange 146023193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1461b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 146223193802SMatthew G. Knepley } 14631627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr); 14641627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr); 1465f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1466b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 1467f5bf2dbfSMichael Lange pointLocal[idx] = p; 1468f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1469f5bf2dbfSMichael Lange idx++; 1470f5bf2dbfSMichael Lange } 1471f5bf2dbfSMichael Lange } 147223193802SMatthew G. Knepley if (shift) { 147323193802SMatthew G. Knepley ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr); 147423193802SMatthew G. Knepley ierr = VecDestroy(&shifts);CHKERRQ(ierr); 147523193802SMatthew G. Knepley } 147623193802SMatthew G. Knepley if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);} 1477f5bf2dbfSMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr); 14781627f6ccSMichael Lange ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr); 1479f5bf2dbfSMichael Lange ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 1480f5bf2dbfSMichael Lange ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr); 1481f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1482f5bf2dbfSMichael Lange } 1483f5bf2dbfSMichael Lange 148415078cd4SMichael Lange /*@C 148515078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 148615078cd4SMichael Lange 148783655b49SVáclav Hapla Collective on DM and PetscSF 148883655b49SVáclav Hapla 148915078cd4SMichael Lange Input Parameter: 149015078cd4SMichael Lange + dm - The source DMPlex object 14911627f6ccSMichael Lange . sf - The star forest communication context describing the migration pattern 149215078cd4SMichael Lange 149315078cd4SMichael Lange Output Parameter: 149415078cd4SMichael Lange - targetDM - The target DMPlex object 149515078cd4SMichael Lange 1496b9f40539SMichael Lange Level: intermediate 149715078cd4SMichael Lange 149815078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 149915078cd4SMichael Lange @*/ 1500b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 150115078cd4SMichael Lange { 1502b9f40539SMichael Lange MPI_Comm comm; 1503cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1504b9f40539SMichael Lange PetscSF sfPoint; 150515078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1506ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1507b9f40539SMichael Lange PetscBool flg; 150815078cd4SMichael Lange PetscErrorCode ierr; 150915078cd4SMichael Lange 151015078cd4SMichael Lange PetscFunctionBegin; 151115078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15121b858b30SMichael Lange ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 1513b9f40539SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 151415078cd4SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 151515078cd4SMichael Lange ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr); 1516cc1750acSStefano Zampini ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 1517cc1750acSStefano Zampini ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr); 151815078cd4SMichael Lange 1519bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 1520b9f40539SMichael Lange ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 1521b9f40539SMichael Lange ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 1522bfb0467fSMichael Lange if (nroots >= 0) { 1523b9f40539SMichael Lange IS isOriginal; 1524ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1525ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1526367003a6SStefano Zampini 1527b9f40539SMichael Lange /* Get the original point numbering */ 1528b9f40539SMichael Lange ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr); 1529b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal);CHKERRQ(ierr); 1530b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr); 1531b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1532b9f40539SMichael Lange /* Convert to positive global numbers */ 1533b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1534b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 1535b9f40539SMichael Lange ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 1536b9f40539SMichael Lange ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr); 1537b9f40539SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr); 1538b9f40539SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr); 1539b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, (const PetscInt*) numbering_new, PETSC_OWN_POINTER, <ogMigration);CHKERRQ(ierr); 1540b9f40539SMichael Lange ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1541b9f40539SMichael Lange ierr = ISDestroy(&isOriginal);CHKERRQ(ierr); 154215078cd4SMichael Lange } else { 1543bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 154415078cd4SMichael Lange ierr = ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration);CHKERRQ(ierr); 154515078cd4SMichael Lange } 1546c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 1547b9f40539SMichael Lange if (flg) { 1548b9f40539SMichael Lange ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr); 1549b9f40539SMichael Lange ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr); 1550b9f40539SMichael Lange } 155115078cd4SMichael Lange /* Migrate DM data to target DM */ 1552ac04eaf7SToby Isaac ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 155315078cd4SMichael Lange ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr); 15540dc1530dSSander Arens ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr); 155515078cd4SMichael Lange ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr); 155608633170SToby Isaac ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 1557ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingDestroy(<ogOriginal);CHKERRQ(ierr); 1558302440fdSBarry Smith ierr = ISLocalToGlobalMappingDestroy(<ogMigration);CHKERRQ(ierr); 15591b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 156015078cd4SMichael Lange PetscFunctionReturn(0); 156115078cd4SMichael Lange } 156215078cd4SMichael Lange 1563*825f8a23SLisandro Dalcin PETSC_INTERN PetscErrorCode DMPlexPartitionLabelClosure_Private(DM,DMLabel,PetscInt,PetscInt,const PetscInt[],IS*); 1564*825f8a23SLisandro Dalcin 15653b8f15a2SMatthew G. Knepley /*@C 156670034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 156770034214SMatthew G. Knepley 156883655b49SVáclav Hapla Collective on DM 156970034214SMatthew G. Knepley 157070034214SMatthew G. Knepley Input Parameter: 157170034214SMatthew G. Knepley + dm - The original DMPlex object 157270034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 157370034214SMatthew G. Knepley 157470034214SMatthew G. Knepley Output Parameter: 1575f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1576f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 157770034214SMatthew G. Knepley 1578f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 157970034214SMatthew G. Knepley 1580b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 158170034214SMatthew G. Knepley representation on the mesh. 158270034214SMatthew G. Knepley 158370034214SMatthew G. Knepley Level: intermediate 158470034214SMatthew G. Knepley 158570034214SMatthew G. Knepley .keywords: mesh, elements 1586b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency() 158770034214SMatthew G. Knepley @*/ 158880cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 158970034214SMatthew G. Knepley { 159070034214SMatthew G. Knepley MPI_Comm comm; 159115078cd4SMichael Lange PetscPartitioner partitioner; 1592f8987ae8SMichael Lange IS cellPart; 1593f8987ae8SMichael Lange PetscSection cellPartSection; 1594cf86098cSMatthew G. Knepley DM dmCoord; 1595f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 159643f7d02bSMichael Lange PetscSF sfProcess, sfMigration, sfStratified, sfPoint; 159798ba2d7fSLawrence Mitchell PetscBool flg, balance; 15989852e123SBarry Smith PetscMPIInt rank, size, p; 159970034214SMatthew G. Knepley PetscErrorCode ierr; 160070034214SMatthew G. Knepley 160170034214SMatthew G. Knepley PetscFunctionBegin; 160270034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1603d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1604d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1605d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 160670034214SMatthew G. Knepley 16070c86c063SLisandro Dalcin if (sf) *sf = NULL; 16080c86c063SLisandro Dalcin *dmParallel = NULL; 160970034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 161070034214SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 16119852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 16120c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 161370034214SMatthew G. Knepley 16140c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 161515078cd4SMichael Lange /* Create cell partition */ 161667eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 161777623264SMatthew G. Knepley ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr); 161815078cd4SMichael Lange ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr); 161915078cd4SMichael Lange ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr); 1620f8987ae8SMichael Lange { 1621f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1622*825f8a23SLisandro Dalcin IS is; 1623*825f8a23SLisandro Dalcin PetscHSetI ht; 1624*825f8a23SLisandro Dalcin PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks, *iranks; 1625f8987ae8SMichael Lange const PetscInt *points; 1626*825f8a23SLisandro Dalcin 1627d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr); 1628*825f8a23SLisandro Dalcin /* Preallocate strata */ 1629*825f8a23SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 1630*825f8a23SLisandro Dalcin ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1631*825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 1632*825f8a23SLisandro Dalcin ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1633*825f8a23SLisandro Dalcin if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);} 1634*825f8a23SLisandro Dalcin } 1635*825f8a23SLisandro Dalcin ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr); 1636*825f8a23SLisandro Dalcin ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr); 1637*825f8a23SLisandro Dalcin ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr); 1638*825f8a23SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 1639*825f8a23SLisandro Dalcin ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr); 1640*825f8a23SLisandro Dalcin ierr = PetscFree(iranks);CHKERRQ(ierr); 1641*825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 1642f8987ae8SMichael Lange ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr); 1643f8987ae8SMichael Lange ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1644f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 1645f8987ae8SMichael Lange ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1646*825f8a23SLisandro Dalcin if (!npoints) continue; 1647*825f8a23SLisandro Dalcin ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr); 1648*825f8a23SLisandro Dalcin ierr = DMPlexPartitionLabelClosure_Private(dm, lblPartition, proc, npoints, points+poff, &is);CHKERRQ(ierr); 1649*825f8a23SLisandro Dalcin ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr); 1650*825f8a23SLisandro Dalcin ierr = ISDestroy(&is);CHKERRQ(ierr); 1651f8987ae8SMichael Lange } 1652f8987ae8SMichael Lange ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr); 1653f8987ae8SMichael Lange } 1654f8987ae8SMichael Lange { 1655f8987ae8SMichael Lange /* Build a global process SF */ 1656f8987ae8SMichael Lange PetscSFNode *remoteProc; 16579852e123SBarry Smith ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr); 16589852e123SBarry Smith for (p = 0; p < size; ++p) { 1659f8987ae8SMichael Lange remoteProc[p].rank = p; 1660f8987ae8SMichael Lange remoteProc[p].index = rank; 1661f8987ae8SMichael Lange } 1662f8987ae8SMichael Lange ierr = PetscSFCreate(comm, &sfProcess);CHKERRQ(ierr); 1663f8987ae8SMichael Lange ierr = PetscObjectSetName((PetscObject) sfProcess, "Process SF");CHKERRQ(ierr); 16649852e123SBarry Smith ierr = PetscSFSetGraph(sfProcess, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr); 1665f8987ae8SMichael Lange } 1666d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr); 1667f8987ae8SMichael Lange ierr = DMPlexPartitionLabelInvert(dm, lblPartition, sfProcess, lblMigration);CHKERRQ(ierr); 1668302440fdSBarry Smith ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr); 166943f7d02bSMichael Lange /* Stratify the SF in case we are migrating an already parallel plex */ 167043f7d02bSMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr); 167143f7d02bSMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 167243f7d02bSMichael Lange sfMigration = sfStratified; 167367eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1674c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 167570034214SMatthew G. Knepley if (flg) { 1676f8987ae8SMichael Lange ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1677f8987ae8SMichael Lange ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 167870034214SMatthew G. Knepley } 1679f8987ae8SMichael Lange 168015078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 168170034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 168270034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 1683b9f40539SMichael Lange ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr); 168470034214SMatthew G. Knepley 1685a157612eSMichael Lange /* Build the point SF without overlap */ 168698ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 168798ba2d7fSLawrence Mitchell ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr); 16881627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr); 1689f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr); 1690cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr); 1691cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1692f5bf2dbfSMichael Lange if (flg) {ierr = PetscSFView(sfPoint, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);} 169370034214SMatthew G. Knepley 1694a157612eSMichael Lange if (overlap > 0) { 169515078cd4SMichael Lange DM dmOverlap; 169615078cd4SMichael Lange PetscInt nroots, nleaves; 169715078cd4SMichael Lange PetscSFNode *newRemote; 169815078cd4SMichael Lange const PetscSFNode *oldRemote; 169915078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1700a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 1701b9f40539SMichael Lange ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr); 1702a157612eSMichael Lange ierr = DMDestroy(dmParallel);CHKERRQ(ierr); 1703a157612eSMichael Lange *dmParallel = dmOverlap; 1704c389ea9fSToby Isaac if (flg) { 17053d822a50SMichael Lange ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr); 170615078cd4SMichael Lange ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr); 1707c389ea9fSToby Isaac } 170843331d4aSMichael Lange 1709f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 1710f8987ae8SMichael Lange ierr = PetscSFGetGraph(sfMigration, &nroots, NULL, NULL, &oldRemote);CHKERRQ(ierr); 171115078cd4SMichael Lange ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 171243331d4aSMichael Lange ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr); 171315078cd4SMichael Lange ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 171415078cd4SMichael Lange ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 171515078cd4SMichael Lange ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr); 171615078cd4SMichael Lange ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 171715078cd4SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1718f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 171915078cd4SMichael Lange sfMigration = sfOverlapPoint; 1720c389ea9fSToby Isaac } 1721bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 1722f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfProcess);CHKERRQ(ierr); 1723f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr); 1724f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr); 17254eca1733SMichael Lange ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 17264eca1733SMichael Lange ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 1727721cbd76SMatthew G. Knepley /* Copy BC */ 1728a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); 172966fe0bfeSMatthew G. Knepley /* Create sfNatural */ 173066fe0bfeSMatthew G. Knepley if (dm->useNatural) { 173166fe0bfeSMatthew G. Knepley PetscSection section; 173266fe0bfeSMatthew G. Knepley 1733e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 17340c1f158bSMatthew G. Knepley ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr); 17350e663481SBlaise Bourdin ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr); 173666fe0bfeSMatthew G. Knepley } 1737721cbd76SMatthew G. Knepley /* Cleanup */ 1738f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 1739f8987ae8SMichael Lange else {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);} 1740f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 174170034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 174270034214SMatthew G. Knepley PetscFunctionReturn(0); 174370034214SMatthew G. Knepley } 1744a157612eSMichael Lange 1745a157612eSMichael Lange /*@C 174624cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1747a157612eSMichael Lange 174883655b49SVáclav Hapla Collective on DM 1749a157612eSMichael Lange 1750a157612eSMichael Lange Input Parameter: 1751a157612eSMichael Lange + dm - The non-overlapping distrbuted DMPlex object 17520c86c063SLisandro Dalcin - overlap - The overlap of partitions 1753a157612eSMichael Lange 1754a157612eSMichael Lange Output Parameter: 1755a157612eSMichael Lange + sf - The PetscSF used for point distribution 1756a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1757a157612eSMichael Lange 1758a157612eSMichael Lange Note: If the mesh was not distributed, the return value is NULL. 1759a157612eSMichael Lange 1760b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1761a157612eSMichael Lange representation on the mesh. 1762a157612eSMichael Lange 1763a157612eSMichael Lange Level: intermediate 1764a157612eSMichael Lange 1765a157612eSMichael Lange .keywords: mesh, elements 1766b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency() 1767a157612eSMichael Lange @*/ 1768b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1769a157612eSMichael Lange { 1770a157612eSMichael Lange MPI_Comm comm; 17713567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1772a157612eSMichael Lange PetscSection rootSection, leafSection; 1773a157612eSMichael Lange IS rootrank, leafrank; 1774cf86098cSMatthew G. Knepley DM dmCoord; 1775a9f1d5b2SMichael Lange DMLabel lblOverlap; 1776f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1777a157612eSMichael Lange PetscErrorCode ierr; 1778a157612eSMichael Lange 1779a157612eSMichael Lange PetscFunctionBegin; 1780a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1781a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1782a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1783a157612eSMichael Lange 17840c86c063SLisandro Dalcin if (sf) *sf = NULL; 17850c86c063SLisandro Dalcin *dmOverlap = NULL; 1786a157612eSMichael Lange ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 17873567eaeeSMatthew G. Knepley ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1788a157612eSMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 17890c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1790a157612eSMichael Lange 17910c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1792a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 179367eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1794a157612eSMichael Lange ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr); 1795a157612eSMichael Lange ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr); 1796a157612eSMichael Lange ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr); 1797a9f1d5b2SMichael Lange ierr = DMPlexCreateOverlap(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr); 1798a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 1799a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr); 1800a9f1d5b2SMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr); 1801a9f1d5b2SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1802a9f1d5b2SMichael Lange sfOverlap = sfStratified; 1803a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr); 1804a9f1d5b2SMichael Lange ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr); 1805a9f1d5b2SMichael Lange 180615fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr); 180715fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr); 180815fff7beSMatthew G. Knepley ierr = ISDestroy(&rootrank);CHKERRQ(ierr); 180915fff7beSMatthew G. Knepley ierr = ISDestroy(&leafrank);CHKERRQ(ierr); 181067eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1811a157612eSMichael Lange 1812a157612eSMichael Lange /* Build the overlapping DM */ 1813a157612eSMichael Lange ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr); 1814a157612eSMichael Lange ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr); 1815a9f1d5b2SMichael Lange ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr); 1816f5bf2dbfSMichael Lange /* Build the new point SF */ 18171627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 1818f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr); 1819cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr); 1820cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1821f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1822a157612eSMichael Lange /* Cleanup overlap partition */ 1823a9f1d5b2SMichael Lange ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr); 1824a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 1825a9f1d5b2SMichael Lange else {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);} 18261b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1827a157612eSMichael Lange PetscFunctionReturn(0); 1828a157612eSMichael Lange } 18296462276dSToby Isaac 18306462276dSToby Isaac /*@C 18316462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 18326462276dSToby Isaac root process of the original's communicator. 18336462276dSToby Isaac 183483655b49SVáclav Hapla Collective on DM 183583655b49SVáclav Hapla 18366462276dSToby Isaac Input Parameters: 18376462276dSToby Isaac . dm - the original DMPlex object 18386462276dSToby Isaac 18396462276dSToby Isaac Output Parameters: 1840a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1841a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 18426462276dSToby Isaac 18436462276dSToby Isaac Level: intermediate 18446462276dSToby Isaac 18456462276dSToby Isaac .keywords: mesh 18466462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM() 18476462276dSToby Isaac @*/ 1848a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 18496462276dSToby Isaac { 18506462276dSToby Isaac MPI_Comm comm; 18516462276dSToby Isaac PetscMPIInt size; 18526462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 18536462276dSToby Isaac PetscErrorCode ierr; 18546462276dSToby Isaac 18556462276dSToby Isaac PetscFunctionBegin; 18566462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18570c86c063SLisandro Dalcin PetscValidPointer(gatherMesh,2); 18580c86c063SLisandro Dalcin *gatherMesh = NULL; 1859a13df41bSStefano Zampini if (sf) *sf = NULL; 18606462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 18616462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 18626462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 18636462276dSToby Isaac ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr); 18646462276dSToby Isaac ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr); 18656462276dSToby Isaac ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr); 18666462276dSToby Isaac ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr); 18676462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr); 1868a13df41bSStefano Zampini ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr); 1869a13df41bSStefano Zampini 18706462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr); 18716462276dSToby Isaac ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr); 18726462276dSToby Isaac ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr); 18736462276dSToby Isaac PetscFunctionReturn(0); 18746462276dSToby Isaac } 18756462276dSToby Isaac 18766462276dSToby Isaac /*@C 18776462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 18786462276dSToby Isaac 187983655b49SVáclav Hapla Collective on DM 188083655b49SVáclav Hapla 18816462276dSToby Isaac Input Parameters: 18826462276dSToby Isaac . dm - the original DMPlex object 18836462276dSToby Isaac 18846462276dSToby Isaac Output Parameters: 1885a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1886a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 18876462276dSToby Isaac 18886462276dSToby Isaac Level: intermediate 18896462276dSToby Isaac 18906462276dSToby Isaac .keywords: mesh 18916462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM() 18926462276dSToby Isaac @*/ 1893a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 18946462276dSToby Isaac { 18956462276dSToby Isaac MPI_Comm comm; 18966462276dSToby Isaac PetscMPIInt size, rank; 18976462276dSToby Isaac PetscInt pStart, pEnd, p; 18986462276dSToby Isaac PetscInt numPoints = -1; 1899a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 19006462276dSToby Isaac DM gatherDM, dmCoord; 19016462276dSToby Isaac PetscSFNode *points; 19026462276dSToby Isaac PetscErrorCode ierr; 19036462276dSToby Isaac 19046462276dSToby Isaac PetscFunctionBegin; 19056462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 19060c86c063SLisandro Dalcin PetscValidPointer(redundantMesh,2); 19070c86c063SLisandro Dalcin *redundantMesh = NULL; 19086462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 19096462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 191068dbc166SMatthew G. Knepley if (size == 1) { 191168dbc166SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 191268dbc166SMatthew G. Knepley *redundantMesh = dm; 1913a13df41bSStefano Zampini if (sf) *sf = NULL; 191468dbc166SMatthew G. Knepley PetscFunctionReturn(0); 191568dbc166SMatthew G. Knepley } 1916a13df41bSStefano Zampini ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr); 19176462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 19186462276dSToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 19196462276dSToby Isaac ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr); 19206462276dSToby Isaac numPoints = pEnd - pStart; 19216462276dSToby Isaac ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr); 19226462276dSToby Isaac ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr); 19236462276dSToby Isaac ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr); 19246462276dSToby Isaac for (p = 0; p < numPoints; p++) { 19256462276dSToby Isaac points[p].index = p; 19266462276dSToby Isaac points[p].rank = 0; 19276462276dSToby Isaac } 19286462276dSToby Isaac ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr); 19296462276dSToby Isaac ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr); 19306462276dSToby Isaac ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr); 19316462276dSToby Isaac ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr); 19326462276dSToby Isaac ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 19336462276dSToby Isaac ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr); 19346462276dSToby Isaac ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr); 19356462276dSToby Isaac if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 19366462276dSToby Isaac ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1937a13df41bSStefano Zampini if (sf) { 1938a13df41bSStefano Zampini PetscSF tsf; 1939a13df41bSStefano Zampini 1940a13df41bSStefano Zampini ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr); 1941a13df41bSStefano Zampini ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr); 1942a13df41bSStefano Zampini ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr); 1943a13df41bSStefano Zampini } 19446462276dSToby Isaac ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr); 1945a13df41bSStefano Zampini ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr); 19466462276dSToby Isaac ierr = DMDestroy(&gatherDM);CHKERRQ(ierr); 19476462276dSToby Isaac PetscFunctionReturn(0); 19486462276dSToby Isaac } 1949