xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision 825f8a23bfb072dd3baafb9731c6829445566127)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser()
203c1f0c11SLawrence Mitchell @*/
213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx)
223c1f0c11SLawrence Mitchell {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
393c1f0c11SLawrence Mitchell - user    - The user callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser()
453c1f0c11SLawrence Mitchell @*/
463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx)
473c1f0c11SLawrence Mitchell {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
678b0b4c70SToby Isaac @*/
685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
698b0b4c70SToby Isaac {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
758b0b4c70SToby Isaac   PetscFunctionReturn(0);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
908b0b4c70SToby Isaac @*/
915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
928b0b4c70SToby Isaac {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
975b317d89SToby Isaac   PetscValidIntPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
998b0b4c70SToby Isaac   PetscFunctionReturn(0);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
10370034214SMatthew G. Knepley {
10470034214SMatthew G. Knepley   const PetscInt *cone = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley   PetscErrorCode  ierr;
10770034214SMatthew G. Knepley 
10870034214SMatthew G. Knepley   PetscFunctionBeginHot;
10970034214SMatthew G. Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
11070034214SMatthew G. Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
1114b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1124b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
11370034214SMatthew G. Knepley     const PetscInt *support = NULL;
11470034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11570034214SMatthew G. Knepley 
1164b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr);
1174b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr);
11870034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
119527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) {
12070034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12170034214SMatthew G. Knepley       }
12270034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
12370034214SMatthew G. Knepley     }
12470034214SMatthew G. Knepley   }
12570034214SMatthew G. Knepley   *adjSize = numAdj;
12670034214SMatthew G. Knepley   PetscFunctionReturn(0);
12770034214SMatthew G. Knepley }
12870034214SMatthew G. Knepley 
12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
13070034214SMatthew G. Knepley {
13170034214SMatthew G. Knepley   const PetscInt *support = NULL;
13270034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
13370034214SMatthew G. Knepley   PetscErrorCode  ierr;
13470034214SMatthew G. Knepley 
13570034214SMatthew G. Knepley   PetscFunctionBeginHot;
13670034214SMatthew G. Knepley   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
13770034214SMatthew G. Knepley   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
1384b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1394b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
14070034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
14170034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14270034214SMatthew G. Knepley 
1434b6b44bdSMatthew G. Knepley     ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr);
1444b6b44bdSMatthew G. Knepley     ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr);
14570034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
146527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) {
14770034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14870034214SMatthew G. Knepley       }
14970034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
15070034214SMatthew G. Knepley     }
15170034214SMatthew G. Knepley   }
15270034214SMatthew G. Knepley   *adjSize = numAdj;
15370034214SMatthew G. Knepley   PetscFunctionReturn(0);
15470034214SMatthew G. Knepley }
15570034214SMatthew G. Knepley 
15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
15770034214SMatthew G. Knepley {
15870034214SMatthew G. Knepley   PetscInt      *star = NULL;
15970034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
16070034214SMatthew G. Knepley   PetscErrorCode ierr;
16170034214SMatthew G. Knepley 
16270034214SMatthew G. Knepley   PetscFunctionBeginHot;
16370034214SMatthew G. Knepley   ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
16470034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
16570034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16670034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16770034214SMatthew G. Knepley 
16870034214SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
16970034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
170527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) {
17170034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
17270034214SMatthew G. Knepley       }
17370034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
17470034214SMatthew G. Knepley     }
17570034214SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
17670034214SMatthew G. Knepley   }
17770034214SMatthew G. Knepley   ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
17870034214SMatthew G. Knepley   *adjSize = numAdj;
17970034214SMatthew G. Knepley   PetscFunctionReturn(0);
18070034214SMatthew G. Knepley }
18170034214SMatthew G. Knepley 
1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
18370034214SMatthew G. Knepley {
18479bad331SMatthew G. Knepley   static PetscInt asiz = 0;
1858b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
1868b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
1878b0b4c70SToby Isaac   PetscInt maxAdjSize;
1888b0b4c70SToby Isaac   PetscSection aSec = NULL;
1898b0b4c70SToby Isaac   IS aIS = NULL;
1908b0b4c70SToby Isaac   const PetscInt *anchors;
1913c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
19270034214SMatthew G. Knepley   PetscErrorCode  ierr;
19370034214SMatthew G. Knepley 
19470034214SMatthew G. Knepley   PetscFunctionBeginHot;
1955b317d89SToby Isaac   if (useAnchors) {
196a17985deSToby Isaac     ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr);
1978b0b4c70SToby Isaac     if (aSec) {
1988b0b4c70SToby Isaac       ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr);
19924c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
2008b0b4c70SToby Isaac       ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr);
2018b0b4c70SToby Isaac       ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr);
2028b0b4c70SToby Isaac     }
2038b0b4c70SToby Isaac   }
20479bad331SMatthew G. Knepley   if (!*adj) {
20524c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20679bad331SMatthew G. Knepley 
20724c766afSToby Isaac     ierr  = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr);
20879bad331SMatthew G. Knepley     ierr  = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
20924c766afSToby Isaac     ierr  = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr);
21024c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
21124c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
21224c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2138b0b4c70SToby Isaac     asiz *= maxAnchors;
21424c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
21579bad331SMatthew G. Knepley     ierr  = PetscMalloc1(asiz,adj);CHKERRQ(ierr);
21679bad331SMatthew G. Knepley   }
21779bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2188b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2193c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
2203c1f0c11SLawrence Mitchell     ierr = mesh->useradjacency(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr);
2213c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
22279bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr);
22370034214SMatthew G. Knepley   } else if (useCone) {
22479bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22570034214SMatthew G. Knepley   } else {
22679bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22770034214SMatthew G. Knepley   }
2285b317d89SToby Isaac   if (useAnchors && aSec) {
2298b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
2308b0b4c70SToby Isaac     PetscInt numAdj = origSize;
2318b0b4c70SToby Isaac     PetscInt i = 0, j;
2328b0b4c70SToby Isaac     PetscInt *orig = *adj;
2338b0b4c70SToby Isaac 
2348b0b4c70SToby Isaac     while (i < origSize) {
2358b0b4c70SToby Isaac       PetscInt p = orig[i];
2368b0b4c70SToby Isaac       PetscInt aDof = 0;
2378b0b4c70SToby Isaac 
2388b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
2398b0b4c70SToby Isaac         ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr);
2408b0b4c70SToby Isaac       }
2418b0b4c70SToby Isaac       if (aDof) {
2428b0b4c70SToby Isaac         PetscInt aOff;
2438b0b4c70SToby Isaac         PetscInt s, q;
2448b0b4c70SToby Isaac 
2458b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
2468b0b4c70SToby Isaac           orig[j - 1] = orig[j];
2478b0b4c70SToby Isaac         }
2488b0b4c70SToby Isaac         origSize--;
2498b0b4c70SToby Isaac         numAdj--;
2508b0b4c70SToby Isaac         ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr);
2518b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
252527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) {
2538b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
2548b0b4c70SToby Isaac           }
2558b0b4c70SToby Isaac           if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
2568b0b4c70SToby Isaac         }
2578b0b4c70SToby Isaac       }
2588b0b4c70SToby Isaac       else {
2598b0b4c70SToby Isaac         i++;
2608b0b4c70SToby Isaac       }
2618b0b4c70SToby Isaac     }
2628b0b4c70SToby Isaac     *adjSize = numAdj;
2638b0b4c70SToby Isaac     ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr);
2648b0b4c70SToby Isaac   }
26570034214SMatthew G. Knepley   PetscFunctionReturn(0);
26670034214SMatthew G. Knepley }
26770034214SMatthew G. Knepley 
26870034214SMatthew G. Knepley /*@
26970034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
27070034214SMatthew G. Knepley 
27170034214SMatthew G. Knepley   Input Parameters:
27270034214SMatthew G. Knepley + dm - The DM object
27370034214SMatthew G. Knepley . p  - The point
27470034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE
27570034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize
27670034214SMatthew G. Knepley 
27770034214SMatthew G. Knepley   Output Parameters:
27870034214SMatthew G. Knepley + adjSize - The number of adjacent points
27970034214SMatthew G. Knepley - adj - The adjacent points
28070034214SMatthew G. Knepley 
28170034214SMatthew G. Knepley   Level: advanced
28270034214SMatthew G. Knepley 
28395452b02SPatrick Sanan   Notes:
28495452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
28570034214SMatthew G. Knepley 
286b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator()
28770034214SMatthew G. Knepley @*/
28870034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
28970034214SMatthew G. Knepley {
2901cf84007SMatthew G. Knepley   PetscBool      useCone, useClosure, useAnchors;
29170034214SMatthew G. Knepley   PetscErrorCode ierr;
29270034214SMatthew G. Knepley 
29370034214SMatthew G. Knepley   PetscFunctionBeginHot;
29470034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29570034214SMatthew G. Knepley   PetscValidPointer(adjSize,3);
29670034214SMatthew G. Knepley   PetscValidPointer(adj,4);
297b0441da4SMatthew G. Knepley   ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
2981cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
2991cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr);
30070034214SMatthew G. Knepley   PetscFunctionReturn(0);
30170034214SMatthew G. Knepley }
30208633170SToby Isaac 
303b0a623aaSMatthew G. Knepley /*@
304b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
305b0a623aaSMatthew G. Knepley 
306b0a623aaSMatthew G. Knepley   Collective on DM
307b0a623aaSMatthew G. Knepley 
308b0a623aaSMatthew G. Knepley   Input Parameters:
309b0a623aaSMatthew G. Knepley + dm      - The DM
310b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity
311b0a623aaSMatthew G. Knepley 
312b0a623aaSMatthew G. Knepley   Output Parameters:
313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
314b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
315b0a623aaSMatthew G. Knepley 
316b0a623aaSMatthew G. Knepley   Level: developer
317b0a623aaSMatthew G. Knepley 
318b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF()
319b0a623aaSMatthew G. Knepley @*/
320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
321b0a623aaSMatthew G. Knepley {
322b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
323b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
324b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
325b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
326b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
327b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
328b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3299852e123SBarry Smith   PetscMPIInt        size, proc, rank;
330b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
331b0a623aaSMatthew G. Knepley 
332b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
333b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
334b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
335b0a623aaSMatthew G. Knepley   if (processRanks) {PetscValidPointer(processRanks, 3);}
336b0a623aaSMatthew G. Knepley   if (sfProcess)    {PetscValidPointer(sfProcess, 4);}
3379852e123SBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
338b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
339b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr);
3409852e123SBarry Smith   ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr);
3419852e123SBarry Smith   ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr);
342b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
343b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr);
344b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr);
345b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
346b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
347b0a623aaSMatthew G. Knepley 
348b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr);
349b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr);
350302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
351b0a623aaSMatthew G. Knepley   }
352b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr);
353b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
354b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr);
355b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr);
356b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
357b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
358b0a623aaSMatthew G. Knepley 
359b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr);
360b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr);
361302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
362b0a623aaSMatthew G. Knepley   }
363b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr);
364b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
365b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
366b0a623aaSMatthew G. Knepley   /* Calculate edges */
367b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3689852e123SBarry Smith   for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
369b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr);
370b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr);
371b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr);
3729852e123SBarry Smith   for(proc = 0, n = 0; proc < size; ++proc) {
373b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
374b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
375b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
376b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
377b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
378b0a623aaSMatthew G. Knepley       ++n;
379b0a623aaSMatthew G. Knepley     }
380b0a623aaSMatthew G. Knepley   }
381b0a623aaSMatthew G. Knepley   ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr);
382b0a623aaSMatthew G. Knepley   if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);}
383b0a623aaSMatthew G. Knepley   else              {ierr = PetscFree(ranksNew);CHKERRQ(ierr);}
384b0a623aaSMatthew G. Knepley   if (sfProcess) {
385b0a623aaSMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr);
386b0a623aaSMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr);
387b0a623aaSMatthew G. Knepley     ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr);
3889852e123SBarry Smith     ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
389b0a623aaSMatthew G. Knepley   }
390b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
391b0a623aaSMatthew G. Knepley }
392b0a623aaSMatthew G. Knepley 
393b0a623aaSMatthew G. Knepley /*@
394b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
395b0a623aaSMatthew G. Knepley 
396b0a623aaSMatthew G. Knepley   Collective on DM
397b0a623aaSMatthew G. Knepley 
398b0a623aaSMatthew G. Knepley   Input Parameter:
399b0a623aaSMatthew G. Knepley . dm - The DM
400b0a623aaSMatthew G. Knepley 
401b0a623aaSMatthew G. Knepley   Output Parameters:
402b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
403b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
404b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
405b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
406b0a623aaSMatthew G. Knepley 
407b0a623aaSMatthew G. Knepley   Level: developer
408b0a623aaSMatthew G. Knepley 
409b0a623aaSMatthew G. Knepley .seealso: DMPlexCreateOverlap()
410b0a623aaSMatthew G. Knepley @*/
411b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
412b0a623aaSMatthew G. Knepley {
413b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
414b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
415b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
416b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
417b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
418b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
419b0a623aaSMatthew G. Knepley   PetscErrorCode  ierr;
420b0a623aaSMatthew G. Knepley 
421b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
422b0a623aaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
423b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
424b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
425b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
426b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
427b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr);
428b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr);
429b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr);
430b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr);
431b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);}
432b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr);
433b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
434b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr);
435b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr);
436b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(nedges,  &remoterank);CHKERRQ(ierr);
437b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
438b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
439b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
440b0a623aaSMatthew G. Knepley   ierr = PetscFree(myrank);CHKERRQ(ierr);
441b0a623aaSMatthew G. Knepley   ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr);
442b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
443b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr);
444b0a623aaSMatthew G. Knepley   ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr);
445b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
446b0a623aaSMatthew G. Knepley }
447b0a623aaSMatthew G. Knepley 
448278397a0SMatthew G. Knepley /*@C
449b0a623aaSMatthew G. Knepley   DMPlexCreateOverlap - Compute owner information for shared points. This basically gets two-sided for an SF.
450b0a623aaSMatthew G. Knepley 
451b0a623aaSMatthew G. Knepley   Collective on DM
452b0a623aaSMatthew G. Knepley 
453b0a623aaSMatthew G. Knepley   Input Parameters:
454b0a623aaSMatthew G. Knepley + dm          - The DM
45524d039d7SMichael Lange . levels      - Number of overlap levels
456b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
457b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
458b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
459b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
460b0a623aaSMatthew G. Knepley 
461b0a623aaSMatthew G. Knepley   Output Parameters:
462a9f1d5b2SMichael Lange + ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
463b0a623aaSMatthew G. Knepley 
464b0a623aaSMatthew G. Knepley   Level: developer
465b0a623aaSMatthew G. Knepley 
4661fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute()
467b0a623aaSMatthew G. Knepley @*/
468a9f1d5b2SMichael Lange PetscErrorCode DMPlexCreateOverlap(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
469b0a623aaSMatthew G. Knepley {
470e540f424SMichael Lange   MPI_Comm           comm;
471b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
472b0a623aaSMatthew G. Knepley   PetscSF            sfPoint, sfProc;
473b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
474b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4751fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
476b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4771fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4789852e123SBarry Smith   PetscMPIInt        rank, size;
47926a7d390SMatthew G. Knepley   PetscBool          useCone, useClosure, flg;
480b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
481b0a623aaSMatthew G. Knepley 
482b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
483e540f424SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
4849852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
485e540f424SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
486b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
487b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
488b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr);
489b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr);
490d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr);
491b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
492b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
493b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
494b0a623aaSMatthew G. Knepley 
495df20756eSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr);
496b0a623aaSMatthew G. Knepley     for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);}
497b0a623aaSMatthew G. Knepley   }
498b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr);
499b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr);
500b0a623aaSMatthew G. Knepley   /* Handle roots */
501b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
502b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
503b0a623aaSMatthew G. Knepley 
504b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
505b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
506b0a623aaSMatthew G. Knepley       ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr);
507b0a623aaSMatthew G. Knepley       if (neighbors) {
508b0a623aaSMatthew G. Knepley         ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr);
509b0a623aaSMatthew G. Knepley         ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
510b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
511b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
512b0a623aaSMatthew G. Knepley 
513b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
514b0a623aaSMatthew G. Knepley           for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
515b0a623aaSMatthew G. Knepley         }
516b0a623aaSMatthew G. Knepley       }
517b0a623aaSMatthew G. Knepley     }
518b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
519b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr);
520b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
521b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr);
522b0a623aaSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
523b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
524b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
525b0a623aaSMatthew G. Knepley 
526b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
527b0a623aaSMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
528b0a623aaSMatthew G. Knepley     }
529b0a623aaSMatthew G. Knepley   }
530b0a623aaSMatthew G. Knepley   ierr = PetscFree(adj);CHKERRQ(ierr);
531b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr);
532b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr);
53324d039d7SMichael Lange   /* Add additional overlap levels */
534be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
535be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
536be200f8dSMichael Lange     ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr);
537be200f8dSMichael Lange     /* Add next level of point donations to the label */
538be200f8dSMichael Lange     ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr);
539be200f8dSMichael Lange   }
54026a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
541b0441da4SMatthew G. Knepley   ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
54226a7d390SMatthew G. Knepley   if (useCone || !useClosure) {
5435abbe4feSMichael Lange     ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr);
54426a7d390SMatthew G. Knepley   }
545c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr);
546e540f424SMichael Lange   if (flg) {
547*825f8a23SLisandro Dalcin     PetscViewer viewer;
548*825f8a23SLisandro Dalcin     ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr);
549*825f8a23SLisandro Dalcin     ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr);
550b0a623aaSMatthew G. Knepley   }
55171a8c5fcSMichael Lange   /* Make global process SF and invert sender to receiver label */
55271a8c5fcSMichael Lange   {
55371a8c5fcSMichael Lange     /* Build a global process SF */
55471a8c5fcSMichael Lange     PetscSFNode *remoteProc;
5559852e123SBarry Smith     ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr);
5569852e123SBarry Smith     for (p = 0; p < size; ++p) {
55771a8c5fcSMichael Lange       remoteProc[p].rank  = p;
55871a8c5fcSMichael Lange       remoteProc[p].index = rank;
55971a8c5fcSMichael Lange     }
56071a8c5fcSMichael Lange     ierr = PetscSFCreate(comm, &sfProc);CHKERRQ(ierr);
56171a8c5fcSMichael Lange     ierr = PetscObjectSetName((PetscObject) sfProc, "Process SF");CHKERRQ(ierr);
5629852e123SBarry Smith     ierr = PetscSFSetGraph(sfProc, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr);
56371a8c5fcSMichael Lange   }
564d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr);
565a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, sfProc, *ovLabel);CHKERRQ(ierr);
566a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
567a9f1d5b2SMichael Lange   for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
568e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
569a9f1d5b2SMichael Lange     ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr);
570a9f1d5b2SMichael Lange     ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr);
571e540f424SMichael Lange   }
572e540f424SMichael Lange   /* Clean up */
5731fd9873aSMichael Lange   ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr);
574b0a623aaSMatthew G. Knepley   ierr = PetscSFDestroy(&sfProc);CHKERRQ(ierr);
575b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
576b0a623aaSMatthew G. Knepley }
57770034214SMatthew G. Knepley 
57824cc2ca5SMatthew G. Knepley /*@C
57924cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
58024cc2ca5SMatthew G. Knepley 
58124cc2ca5SMatthew G. Knepley   Collective on DM
58224cc2ca5SMatthew G. Knepley 
58324cc2ca5SMatthew G. Knepley   Input Parameters:
58424cc2ca5SMatthew G. Knepley + dm          - The DM
58524cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
58624cc2ca5SMatthew G. Knepley 
58724cc2ca5SMatthew G. Knepley   Output Parameters:
58824cc2ca5SMatthew G. Knepley + migrationSF - An SF that maps original points in old locations to points in new locations
58924cc2ca5SMatthew G. Knepley 
59024cc2ca5SMatthew G. Knepley   Level: developer
59124cc2ca5SMatthew G. Knepley 
59224cc2ca5SMatthew G. Knepley .seealso: DMPlexCreateOverlap(), DMPlexDistribute()
59324cc2ca5SMatthew G. Knepley @*/
59446f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
59546f9b1c3SMichael Lange {
59646f9b1c3SMichael Lange   MPI_Comm           comm;
5979852e123SBarry Smith   PetscMPIInt        rank, size;
59846f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
59946f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
60046f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
60146f9b1c3SMichael Lange   PetscSFNode       *iremote;
60246f9b1c3SMichael Lange   PetscSF            pointSF;
60346f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
60446f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
60546f9b1c3SMichael Lange   PetscErrorCode     ierr;
60646f9b1c3SMichael Lange 
60746f9b1c3SMichael Lange   PetscFunctionBegin;
60846f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
60946f9b1c3SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
61046f9b1c3SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
6119852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
61246f9b1c3SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
61346f9b1c3SMichael Lange 
61446f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
61546f9b1c3SMichael Lange   ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr);
61646f9b1c3SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
61746f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
61846f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
61946f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
62046f9b1c3SMichael Lange   }
62146f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
62246f9b1c3SMichael Lange   ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
62346f9b1c3SMichael Lange   ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
62446f9b1c3SMichael Lange 
62546f9b1c3SMichael Lange   /* Count recevied points in each stratum and compute the internal strata shift */
62646f9b1c3SMichael Lange   ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr);
62746f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
62846f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
62946f9b1c3SMichael Lange   depthShift[dim] = 0;
63046f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
63146f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
63246f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
63346f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
63446f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
63546f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
63646f9b1c3SMichael Lange   }
63746f9b1c3SMichael Lange 
63846f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
63946f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
64046f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
64109b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr);
64209b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr);
64346f9b1c3SMichael Lange   /* First map local points to themselves */
64446f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
64546f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
64646f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
64746f9b1c3SMichael Lange       point = p + depthShift[d];
64846f9b1c3SMichael Lange       ilocal[point] = point;
64946f9b1c3SMichael Lange       iremote[point].index = p;
65046f9b1c3SMichael Lange       iremote[point].rank = rank;
65146f9b1c3SMichael Lange       depthIdx[d]++;
65246f9b1c3SMichael Lange     }
65346f9b1c3SMichael Lange   }
65446f9b1c3SMichael Lange 
65546f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
65646f9b1c3SMichael Lange   ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr);
65746f9b1c3SMichael Lange   ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr);
65846f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
65946f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
66046f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
66146f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
66246f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
66346f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
66446f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
66546f9b1c3SMichael Lange       }
66646f9b1c3SMichael Lange     }
66746f9b1c3SMichael Lange   }
66846f9b1c3SMichael Lange 
66946f9b1c3SMichael Lange   /* Now add the incoming overlap points */
67046f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
67146f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
67246f9b1c3SMichael Lange     ilocal[point] = point;
67346f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
67446f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
67546f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
67646f9b1c3SMichael Lange   }
67715fff7beSMatthew G. Knepley   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
67846f9b1c3SMichael Lange 
67946f9b1c3SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
68046f9b1c3SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr);
68146f9b1c3SMichael Lange   ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr);
68246f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
68346f9b1c3SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
68446f9b1c3SMichael Lange 
68546f9b1c3SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
68670034214SMatthew G. Knepley   PetscFunctionReturn(0);
68770034214SMatthew G. Knepley }
68870034214SMatthew G. Knepley 
689a9f1d5b2SMichael Lange /*@
690f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
691a9f1d5b2SMichael Lange 
692a9f1d5b2SMichael Lange   Input Parameter:
693a9f1d5b2SMichael Lange + dm          - The DM
694a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
695a9f1d5b2SMichael Lange 
696a9f1d5b2SMichael Lange   Output Parameter:
697a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
698a9f1d5b2SMichael Lange 
699a9f1d5b2SMichael Lange   Level: developer
700a9f1d5b2SMichael Lange 
701a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap()
702a9f1d5b2SMichael Lange @*/
703a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
704a9f1d5b2SMichael Lange {
705a9f1d5b2SMichael Lange   MPI_Comm           comm;
7069852e123SBarry Smith   PetscMPIInt        rank, size;
7077fab53ddSMatthew G. Knepley   PetscInt           d, ldepth, depth, p, pStart, pEnd, nroots, nleaves;
708a9f1d5b2SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
709a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
710f0e73a3dSToby Isaac   PetscInt           hybEnd[4];
711a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
712a9f1d5b2SMichael Lange   PetscErrorCode     ierr;
713a9f1d5b2SMichael Lange 
714a9f1d5b2SMichael Lange   PetscFunctionBegin;
715a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
716a9f1d5b2SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
717a9f1d5b2SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
7189852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
7197fab53ddSMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr);
720b2566f29SBarry Smith   ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
7217fab53ddSMatthew G. Knepley   if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth);
722a9f1d5b2SMichael Lange 
723a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
724a9f1d5b2SMichael Lange   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr);
725a9f1d5b2SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
726f0e73a3dSToby Isaac   ierr = DMPlexGetHybridBounds(dm,&hybEnd[depth],&hybEnd[depth-1],&hybEnd[1],&hybEnd[0]);CHKERRQ(ierr);
7277fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
728a9f1d5b2SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
729f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
730f0e73a3dSToby Isaac       if (hybEnd[d] >= 0 && p >= hybEnd[d]) { /* put in a separate value for hybrid points */
731f0e73a3dSToby Isaac         pointDepths[p] = 2 * d;
732f0e73a3dSToby Isaac       } else {
733f0e73a3dSToby Isaac         pointDepths[p] = 2 * d + 1;
734f0e73a3dSToby Isaac       }
735f0e73a3dSToby Isaac     }
736a9f1d5b2SMichael Lange   }
7377fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1;
738a9f1d5b2SMichael Lange   ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
739a9f1d5b2SMichael Lange   ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
740a9f1d5b2SMichael Lange   /* Count recevied points in each stratum and compute the internal strata shift */
741f0e73a3dSToby Isaac   ierr = PetscMalloc3(2*(depth+1), &depthRecv, 2*(depth+1), &depthShift, 2*(depth+1), &depthIdx);CHKERRQ(ierr);
742f0e73a3dSToby Isaac   for (d = 0; d < 2*(depth+1); ++d) depthRecv[d] = 0;
7437fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++;
744f0e73a3dSToby Isaac   depthShift[2*depth+1] = 0;
745f0e73a3dSToby Isaac   for (d = 0; d < 2*depth+1; ++d) depthShift[d] = depthRecv[2 * depth + 1];
746f0e73a3dSToby Isaac   for (d = 0; d < 2*depth; ++d) depthShift[d] += depthRecv[2 * depth];
747f0e73a3dSToby Isaac   depthShift[0] += depthRecv[1];
748f0e73a3dSToby Isaac   for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[1];
749f0e73a3dSToby Isaac   for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[0];
750f0e73a3dSToby Isaac   for (d = 2 * depth-1; d > 2; --d) {
751f0e73a3dSToby Isaac     PetscInt e;
752f0e73a3dSToby Isaac 
753f0e73a3dSToby Isaac     for (e = d -1; e > 1; --e) depthShift[e] += depthRecv[d];
754f0e73a3dSToby Isaac   }
755f0e73a3dSToby Isaac   for (d = 0; d < 2*(depth+1); ++d) {depthIdx[d] = 0;}
756a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
757a9f1d5b2SMichael Lange   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
7587fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
7597fab53ddSMatthew G. Knepley     const PetscInt dep = remoteDepths[p];
7607fab53ddSMatthew G. Knepley 
7617fab53ddSMatthew G. Knepley     ilocal[p] = depthShift[dep] + depthIdx[dep];
7627fab53ddSMatthew G. Knepley     depthIdx[dep]++;
763a9f1d5b2SMichael Lange   }
764a9f1d5b2SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
765a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr);
766a9f1d5b2SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr);
767a9f1d5b2SMichael Lange   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
768a9f1d5b2SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
769a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
770a9f1d5b2SMichael Lange }
771a9f1d5b2SMichael Lange 
77270034214SMatthew G. Knepley /*@
77370034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
77470034214SMatthew G. Knepley 
77570034214SMatthew G. Knepley   Collective on DM
77670034214SMatthew G. Knepley 
77770034214SMatthew G. Knepley   Input Parameters:
77870034214SMatthew G. Knepley + dm - The DMPlex object
77970034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
78070034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
78170034214SMatthew G. Knepley - originalVec - The existing data
78270034214SMatthew G. Knepley 
78370034214SMatthew G. Knepley   Output Parameters:
78470034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
78570034214SMatthew G. Knepley - newVec - The new data
78670034214SMatthew G. Knepley 
78770034214SMatthew G. Knepley   Level: developer
78870034214SMatthew G. Knepley 
78970034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData()
79070034214SMatthew G. Knepley @*/
79170034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
79270034214SMatthew G. Knepley {
79370034214SMatthew G. Knepley   PetscSF        fieldSF;
79470034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
79570034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
79670034214SMatthew G. Knepley   PetscErrorCode ierr;
79770034214SMatthew G. Knepley 
79870034214SMatthew G. Knepley   PetscFunctionBegin;
79970034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
80070034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
80170034214SMatthew G. Knepley 
80270034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
80370034214SMatthew G. Knepley   ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr);
80470034214SMatthew G. Knepley   ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr);
80570034214SMatthew G. Knepley 
80670034214SMatthew G. Knepley   ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr);
80770034214SMatthew G. Knepley   ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr);
80870034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8098a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
81070034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
81170034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
81270034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
81370034214SMatthew G. Knepley   ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr);
81470034214SMatthew G. Knepley   ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr);
81570034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
81670034214SMatthew G. Knepley   PetscFunctionReturn(0);
81770034214SMatthew G. Knepley }
81870034214SMatthew G. Knepley 
81970034214SMatthew G. Knepley /*@
82070034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
82170034214SMatthew G. Knepley 
82270034214SMatthew G. Knepley   Collective on DM
82370034214SMatthew G. Knepley 
82470034214SMatthew G. Knepley   Input Parameters:
82570034214SMatthew G. Knepley + dm - The DMPlex object
82670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
82770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
82870034214SMatthew G. Knepley - originalIS - The existing data
82970034214SMatthew G. Knepley 
83070034214SMatthew G. Knepley   Output Parameters:
83170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
83270034214SMatthew G. Knepley - newIS - The new data
83370034214SMatthew G. Knepley 
83470034214SMatthew G. Knepley   Level: developer
83570034214SMatthew G. Knepley 
83670034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData()
83770034214SMatthew G. Knepley @*/
83870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
83970034214SMatthew G. Knepley {
84070034214SMatthew G. Knepley   PetscSF         fieldSF;
84170034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
84270034214SMatthew G. Knepley   const PetscInt *originalValues;
84370034214SMatthew G. Knepley   PetscErrorCode  ierr;
84470034214SMatthew G. Knepley 
84570034214SMatthew G. Knepley   PetscFunctionBegin;
84670034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
84770034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
84870034214SMatthew G. Knepley 
84970034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
850854ce69bSBarry Smith   ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr);
85170034214SMatthew G. Knepley 
85270034214SMatthew G. Knepley   ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr);
85370034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8548a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
855aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
856aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
85770034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
85870034214SMatthew G. Knepley   ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr);
85970034214SMatthew G. Knepley   ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr);
86070034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
86170034214SMatthew G. Knepley   PetscFunctionReturn(0);
86270034214SMatthew G. Knepley }
86370034214SMatthew G. Knepley 
86470034214SMatthew G. Knepley /*@
86570034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
86670034214SMatthew G. Knepley 
86770034214SMatthew G. Knepley   Collective on DM
86870034214SMatthew G. Knepley 
86970034214SMatthew G. Knepley   Input Parameters:
87070034214SMatthew G. Knepley + dm - The DMPlex object
87170034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
87270034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
87370034214SMatthew G. Knepley . datatype - The type of data
87470034214SMatthew G. Knepley - originalData - The existing data
87570034214SMatthew G. Knepley 
87670034214SMatthew G. Knepley   Output Parameters:
87770034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
87870034214SMatthew G. Knepley - newData - The new data
87970034214SMatthew G. Knepley 
88070034214SMatthew G. Knepley   Level: developer
88170034214SMatthew G. Knepley 
88270034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField()
88370034214SMatthew G. Knepley @*/
88470034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
88570034214SMatthew G. Knepley {
88670034214SMatthew G. Knepley   PetscSF        fieldSF;
88770034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
88870034214SMatthew G. Knepley   PetscMPIInt    dataSize;
88970034214SMatthew G. Knepley   PetscErrorCode ierr;
89070034214SMatthew G. Knepley 
89170034214SMatthew G. Knepley   PetscFunctionBegin;
89270034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
89370034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
89470034214SMatthew G. Knepley 
89570034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
89670034214SMatthew G. Knepley   ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr);
89770034214SMatthew G. Knepley   ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr);
89870034214SMatthew G. Knepley 
89970034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
9008a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
90170034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
90270034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
90370034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
90470034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
90570034214SMatthew G. Knepley   PetscFunctionReturn(0);
90670034214SMatthew G. Knepley }
90770034214SMatthew G. Knepley 
90824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
909cc71bff1SMichael Lange {
910cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
911cc71bff1SMichael Lange   MPI_Comm               comm;
912cc71bff1SMichael Lange   PetscSF                coneSF;
913cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
914ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
915cc71bff1SMichael Lange   PetscBool              flg;
916cc71bff1SMichael Lange   PetscErrorCode         ierr;
917cc71bff1SMichael Lange 
918cc71bff1SMichael Lange   PetscFunctionBegin;
919cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9200c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
921cc71bff1SMichael Lange 
9220c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
923cc71bff1SMichael Lange   /* Distribute cone section */
924cc71bff1SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
925cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr);
926cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr);
927cc71bff1SMichael Lange   ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr);
928cc71bff1SMichael Lange   ierr = DMSetUp(dmParallel);CHKERRQ(ierr);
929cc71bff1SMichael Lange   {
930cc71bff1SMichael Lange     PetscInt pStart, pEnd, p;
931cc71bff1SMichael Lange 
932cc71bff1SMichael Lange     ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr);
933cc71bff1SMichael Lange     for (p = pStart; p < pEnd; ++p) {
934cc71bff1SMichael Lange       PetscInt coneSize;
935cc71bff1SMichael Lange       ierr               = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr);
936cc71bff1SMichael Lange       pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize);
937cc71bff1SMichael Lange     }
938cc71bff1SMichael Lange   }
939cc71bff1SMichael Lange   /* Communicate and renumber cones */
940cc71bff1SMichael Lange   ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr);
9418a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
942cc71bff1SMichael Lange   ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr);
943ac04eaf7SToby Isaac   if (original) {
944ac04eaf7SToby Isaac     PetscInt numCones;
945ac04eaf7SToby Isaac 
946367003a6SStefano Zampini     ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr);
947367003a6SStefano Zampini     ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr);
948ac04eaf7SToby Isaac     ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr);
949367003a6SStefano Zampini   } else {
950ac04eaf7SToby Isaac     globCones = cones;
951ac04eaf7SToby Isaac   }
952cc71bff1SMichael Lange   ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr);
953ac04eaf7SToby Isaac   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
954ac04eaf7SToby Isaac   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
955ac04eaf7SToby Isaac   if (original) {
956ac04eaf7SToby Isaac     ierr = PetscFree(globCones);CHKERRQ(ierr);
957ac04eaf7SToby Isaac   }
958cc71bff1SMichael Lange   ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr);
959cc71bff1SMichael Lange   ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr);
96062795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG)
9613533c52bSMatthew G. Knepley   {
9623533c52bSMatthew G. Knepley     PetscInt  p;
9633533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
9643533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
965367003a6SStefano Zampini       if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);}
9663533c52bSMatthew G. Knepley     }
9673533c52bSMatthew G. Knepley     if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
9683533c52bSMatthew G. Knepley   }
9693533c52bSMatthew G. Knepley #endif
970c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr);
971cc71bff1SMichael Lange   if (flg) {
972cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr);
973cc71bff1SMichael Lange     ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
974cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr);
975cc71bff1SMichael Lange     ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
976cc71bff1SMichael Lange     ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr);
977cc71bff1SMichael Lange   }
978cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr);
979cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr);
980cc71bff1SMichael Lange   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
981cc71bff1SMichael Lange   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
982cc71bff1SMichael Lange   ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr);
983cc71bff1SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
984eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
985cc71bff1SMichael Lange   {
986cc71bff1SMichael Lange     PetscInt pStart, pEnd;
987cc71bff1SMichael Lange 
988cc71bff1SMichael Lange     ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr);
989cc71bff1SMichael Lange     ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr);
990cc71bff1SMichael Lange   }
991cc71bff1SMichael Lange   ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr);
992cc71bff1SMichael Lange   ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr);
9931cf84007SMatthew G. Knepley   {
9941cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
9951cf84007SMatthew G. Knepley 
996b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
997b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
9981cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
9991cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
10001cf84007SMatthew G. Knepley   }
1001cc71bff1SMichael Lange   PetscFunctionReturn(0);
1002cc71bff1SMichael Lange }
1003cc71bff1SMichael Lange 
100424cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
10050df0e737SMichael Lange {
10060df0e737SMichael Lange   MPI_Comm         comm;
10070df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
10080df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
10090df0e737SMichael Lange   PetscInt         bs;
101090b157c4SStefano Zampini   PetscBool        isper;
10110df0e737SMichael Lange   const char      *name;
10120df0e737SMichael Lange   const PetscReal *maxCell, *L;
10135dc8c3f7SMatthew G. Knepley   const DMBoundaryType *bd;
10140df0e737SMichael Lange   PetscErrorCode   ierr;
10150df0e737SMichael Lange 
10160df0e737SMichael Lange   PetscFunctionBegin;
10170df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10180c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10190df0e737SMichael Lange 
10200df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10210df0e737SMichael Lange   ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr);
10220df0e737SMichael Lange   ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr);
10230df0e737SMichael Lange   ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr);
10240df0e737SMichael Lange   if (originalCoordinates) {
10258b9ced59SLisandro Dalcin     ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr);
10260df0e737SMichael Lange     ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr);
10270df0e737SMichael Lange     ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr);
10280df0e737SMichael Lange 
10290df0e737SMichael Lange     ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr);
10300df0e737SMichael Lange     ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr);
10310df0e737SMichael Lange     ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr);
10320df0e737SMichael Lange     ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr);
10330df0e737SMichael Lange     ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr);
10340df0e737SMichael Lange   }
103590b157c4SStefano Zampini   ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr);
103690b157c4SStefano Zampini   ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr);
10370df0e737SMichael Lange   PetscFunctionReturn(0);
10380df0e737SMichael Lange }
10390df0e737SMichael Lange 
1040d995df53SMatthew G. Knepley /* Here we are assuming that process 0 always has everything */
104124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
10420df0e737SMichael Lange {
1043df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
10440df0e737SMichael Lange   MPI_Comm         comm;
10457980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
10460df0e737SMichael Lange   PetscMPIInt      rank;
10477980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1048df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1049df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
10500df0e737SMichael Lange   PetscErrorCode   ierr;
10510df0e737SMichael Lange 
10520df0e737SMichael Lange   PetscFunctionBegin;
10530df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10540c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10550c86c063SLisandro Dalcin 
10560df0e737SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
10570df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10580df0e737SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
10590df0e737SMichael Lange 
1060df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
10617980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
10627980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr);
1063d67d17b1SMatthew G. Knepley   if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);}
1064df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
1065b2566f29SBarry Smith   ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr);
1066df0420ecSMatthew G. Knepley   if (sendDepth) {
10677980c9d4SMatthew G. Knepley     ierr = DMRemoveLabel(dmParallel, "depth", &depthLabel);CHKERRQ(ierr);
10687980c9d4SMatthew G. Knepley     ierr = DMLabelDestroy(&depthLabel);CHKERRQ(ierr);
1069df0420ecSMatthew G. Knepley   }
1070d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
1071c58f1c22SToby Isaac   ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr);
1072d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
10730df0e737SMichael Lange   ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr);
1074627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
1075bdd2d751SMichael Lange   for (l = numLabels-1; l >= 0; --l) {
1076bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
107783e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput = PETSC_TRUE, isOutput;
1078d67d17b1SMatthew G. Knepley     const char *name = NULL;
10790df0e737SMichael Lange 
1080d67d17b1SMatthew G. Knepley     if (hasLabels) {
1081d67d17b1SMatthew G. Knepley       ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr);
10820df0e737SMichael Lange       /* Skip "depth" because it is recreated */
1083d67d17b1SMatthew G. Knepley       ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr);
1084d67d17b1SMatthew G. Knepley       ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr);
1085d67d17b1SMatthew G. Knepley     }
108683e10cb3SLisandro Dalcin     ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr);
108783e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
1088bdd2d751SMichael Lange     ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr);
108983e10cb3SLisandro Dalcin     if (isDepth) {
10907980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
10917980c9d4SMatthew G. Knepley       PetscInt gdepth;
10927980c9d4SMatthew G. Knepley 
10937980c9d4SMatthew G. Knepley       ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
10947980c9d4SMatthew G. Knepley       if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth);
10957980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
10967980c9d4SMatthew G. Knepley         PetscBool has;
10977980c9d4SMatthew G. Knepley 
10987980c9d4SMatthew G. Knepley         ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr);
109983e10cb3SLisandro Dalcin         if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);}
11007980c9d4SMatthew G. Knepley       }
11017980c9d4SMatthew G. Knepley     }
1102c58f1c22SToby Isaac     ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr);
110383e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
1104d67d17b1SMatthew G. Knepley     if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);}
110583e10cb3SLisandro Dalcin     ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr);
1106d67d17b1SMatthew G. Knepley     ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr);
1107d67d17b1SMatthew G. Knepley     ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr);
11080df0e737SMichael Lange   }
11090df0e737SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
11100df0e737SMichael Lange   PetscFunctionReturn(0);
11110df0e737SMichael Lange }
11120df0e737SMichael Lange 
111324cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel)
11149734c634SMichael Lange {
11159734c634SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
11169734c634SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1117f0e73a3dSToby Isaac   PetscBool      *isHybrid, *isHybridParallel;
1118f0e73a3dSToby Isaac   PetscInt        dim, depth, d;
1119f0e73a3dSToby Isaac   PetscInt        pStart, pEnd, pStartP, pEndP;
11209734c634SMichael Lange   PetscErrorCode  ierr;
11219734c634SMichael Lange 
11229734c634SMichael Lange   PetscFunctionBegin;
11239734c634SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11240c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
11259734c634SMichael Lange 
11269734c634SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
11279734c634SMichael Lange   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
1128f0e73a3dSToby Isaac   ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr);
1129f0e73a3dSToby Isaac   ierr = DMPlexGetChart(dmParallel,&pStartP,&pEndP);CHKERRQ(ierr);
1130f0e73a3dSToby Isaac   ierr = PetscCalloc2(pEnd-pStart,&isHybrid,pEndP-pStartP,&isHybridParallel);CHKERRQ(ierr);
1131f0e73a3dSToby Isaac   for (d = 0; d <= depth; d++) {
1132f0e73a3dSToby Isaac     PetscInt hybridMax = (depth == 1 && d == 1) ? mesh->hybridPointMax[dim] : mesh->hybridPointMax[d];
11339734c634SMichael Lange 
1134f0e73a3dSToby Isaac     if (hybridMax >= 0) {
1135f0e73a3dSToby Isaac       PetscInt sStart, sEnd, p;
11369734c634SMichael Lange 
1137f0e73a3dSToby Isaac       ierr = DMPlexGetDepthStratum(dm,d,&sStart,&sEnd);CHKERRQ(ierr);
1138f0e73a3dSToby Isaac       for (p = hybridMax; p < sEnd; p++) isHybrid[p-pStart] = PETSC_TRUE;
11399734c634SMichael Lange     }
11409734c634SMichael Lange   }
1141f0e73a3dSToby Isaac   ierr = PetscSFBcastBegin(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr);
1142f0e73a3dSToby Isaac   ierr = PetscSFBcastEnd(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr);
1143f0e73a3dSToby Isaac   for (d = 0; d <= dim; d++) pmesh->hybridPointMax[d] = -1;
1144f0e73a3dSToby Isaac   for (d = 0; d <= depth; d++) {
1145f0e73a3dSToby Isaac     PetscInt sStart, sEnd, p, dd;
1146f0e73a3dSToby Isaac 
1147f0e73a3dSToby Isaac     ierr = DMPlexGetDepthStratum(dmParallel,d,&sStart,&sEnd);CHKERRQ(ierr);
1148f0e73a3dSToby Isaac     dd = (depth == 1 && d == 1) ? dim : d;
1149f0e73a3dSToby Isaac     for (p = sStart; p < sEnd; p++) {
1150f0e73a3dSToby Isaac       if (isHybridParallel[p-pStartP]) {
1151f0e73a3dSToby Isaac         pmesh->hybridPointMax[dd] = p;
1152f0e73a3dSToby Isaac         break;
1153f0e73a3dSToby Isaac       }
1154f0e73a3dSToby Isaac     }
1155f0e73a3dSToby Isaac   }
1156f0e73a3dSToby Isaac   ierr = PetscFree2(isHybrid,isHybridParallel);CHKERRQ(ierr);
11579734c634SMichael Lange   PetscFunctionReturn(0);
11589734c634SMichael Lange }
11590df0e737SMichael Lange 
116024cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1161a6f36705SMichael Lange {
116215078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
116315078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1164a6f36705SMichael Lange   MPI_Comm        comm;
1165a6f36705SMichael Lange   DM              refTree;
1166a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1167a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1168a6f36705SMichael Lange   PetscBool       flg;
1169a6f36705SMichael Lange   PetscErrorCode  ierr;
1170a6f36705SMichael Lange 
1171a6f36705SMichael Lange   PetscFunctionBegin;
1172a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11730c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
1174a6f36705SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1175a6f36705SMichael Lange 
1176a6f36705SMichael Lange   /* Set up tree */
1177a6f36705SMichael Lange   ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr);
1178a6f36705SMichael Lange   ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr);
1179a6f36705SMichael Lange   ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr);
1180a6f36705SMichael Lange   if (origParentSection) {
1181a6f36705SMichael Lange     PetscInt        pStart, pEnd;
118208633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1183a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1184a6f36705SMichael Lange     PetscSF         parentSF;
1185a6f36705SMichael Lange 
1186a6f36705SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
1187a6f36705SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr);
1188a6f36705SMichael Lange     ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr);
1189a6f36705SMichael Lange     ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr);
1190a6f36705SMichael Lange     ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr);
11918a713f3bSLawrence Mitchell     ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr);
1192a6f36705SMichael Lange     ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr);
1193a6f36705SMichael Lange     ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr);
119408633170SToby Isaac     if (original) {
119508633170SToby Isaac       PetscInt numParents;
119608633170SToby Isaac 
119708633170SToby Isaac       ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr);
119808633170SToby Isaac       ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr);
119908633170SToby Isaac       ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr);
120008633170SToby Isaac     }
120108633170SToby Isaac     else {
120208633170SToby Isaac       globParents = origParents;
120308633170SToby Isaac     }
120408633170SToby Isaac     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
120508633170SToby Isaac     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
120608633170SToby Isaac     if (original) {
120708633170SToby Isaac       ierr = PetscFree(globParents);CHKERRQ(ierr);
120808633170SToby Isaac     }
1209a6f36705SMichael Lange     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1210a6f36705SMichael Lange     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1211a6f36705SMichael Lange     ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr);
121262795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG)
12134a54e071SToby Isaac     {
12144a54e071SToby Isaac       PetscInt  p;
12154a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
12164a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
12174a54e071SToby Isaac         if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);}
12184a54e071SToby Isaac       }
12194a54e071SToby Isaac       if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
12204a54e071SToby Isaac     }
12214a54e071SToby Isaac #endif
1222c5929fdfSBarry Smith     ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr);
1223a6f36705SMichael Lange     if (flg) {
1224a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr);
1225a6f36705SMichael Lange       ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1226a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr);
1227a6f36705SMichael Lange       ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1228a6f36705SMichael Lange       ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr);
1229a6f36705SMichael Lange     }
1230a6f36705SMichael Lange     ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr);
1231a6f36705SMichael Lange     ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr);
1232a6f36705SMichael Lange     ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr);
1233a6f36705SMichael Lange     ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr);
1234a6f36705SMichael Lange   }
123515078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1236a6f36705SMichael Lange   PetscFunctionReturn(0);
1237a6f36705SMichael Lange }
12380df0e737SMichael Lange 
123924cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
12404eca1733SMichael Lange {
12419852e123SBarry Smith   PetscMPIInt            rank, size;
12424eca1733SMichael Lange   MPI_Comm               comm;
12434eca1733SMichael Lange   PetscErrorCode         ierr;
12444eca1733SMichael Lange 
12454eca1733SMichael Lange   PetscFunctionBegin;
12464eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12470c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12484eca1733SMichael Lange 
12494eca1733SMichael Lange   /* Create point SF for parallel mesh */
12504eca1733SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12514eca1733SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
12524eca1733SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
12539852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
12544eca1733SMichael Lange   {
12554eca1733SMichael Lange     const PetscInt *leaves;
12564eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
12574eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
12584eca1733SMichael Lange     PetscInt        pStart, pEnd;
12594eca1733SMichael Lange 
12604eca1733SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
12614eca1733SMichael Lange     ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr);
12624eca1733SMichael Lange     ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr);
12634eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
12644eca1733SMichael Lange       rowners[p].rank  = -1;
12654eca1733SMichael Lange       rowners[p].index = -1;
12664eca1733SMichael Lange     }
12674eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12684eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12694eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12704eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
12714eca1733SMichael Lange         lowners[p].rank  = rank;
12724eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
12734eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
12744eca1733SMichael Lange         lowners[p].rank  = -2;
12754eca1733SMichael Lange         lowners[p].index = -2;
12764eca1733SMichael Lange       }
12774eca1733SMichael Lange     }
12784eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
12794eca1733SMichael Lange       rowners[p].rank  = -3;
12804eca1733SMichael Lange       rowners[p].index = -3;
12814eca1733SMichael Lange     }
12824eca1733SMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12834eca1733SMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12844eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12854eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12864eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12874eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
12884eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
12894eca1733SMichael Lange     }
12904eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr);
12914eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr);
12924eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
12934eca1733SMichael Lange       if (lowners[p].rank != rank) {
12944eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
12954eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
12964eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
12974eca1733SMichael Lange         ++gp;
12984eca1733SMichael Lange       }
12994eca1733SMichael Lange     }
13004eca1733SMichael Lange     ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr);
13014eca1733SMichael Lange     ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr);
13024eca1733SMichael Lange     ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr);
13034eca1733SMichael Lange   }
13041cf84007SMatthew G. Knepley   {
13051cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
13061cf84007SMatthew G. Knepley 
1307b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1308b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
13091cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
13101cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
13111cf84007SMatthew G. Knepley   }
13124eca1733SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
13134eca1733SMichael Lange   PetscFunctionReturn(0);
13144eca1733SMichael Lange }
13154eca1733SMichael Lange 
131698ba2d7fSLawrence Mitchell /*@
131798ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
131898ba2d7fSLawrence Mitchell 
131998ba2d7fSLawrence Mitchell   Input Parameters:
132098ba2d7fSLawrence Mitchell + dm - The DMPlex object
132198ba2d7fSLawrence Mitchell - flg - Balance the partition?
132298ba2d7fSLawrence Mitchell 
132398ba2d7fSLawrence Mitchell   Level: intermediate
132498ba2d7fSLawrence Mitchell 
132598ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance()
132698ba2d7fSLawrence Mitchell @*/
132798ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
132898ba2d7fSLawrence Mitchell {
132998ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
133098ba2d7fSLawrence Mitchell 
133198ba2d7fSLawrence Mitchell   PetscFunctionBegin;
133298ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
133398ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
133498ba2d7fSLawrence Mitchell }
133598ba2d7fSLawrence Mitchell 
133698ba2d7fSLawrence Mitchell /*@
133798ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
133898ba2d7fSLawrence Mitchell 
133998ba2d7fSLawrence Mitchell   Input Parameter:
134098ba2d7fSLawrence Mitchell + dm - The DMPlex object
134198ba2d7fSLawrence Mitchell 
134298ba2d7fSLawrence Mitchell   Output Parameter:
134398ba2d7fSLawrence Mitchell + flg - Balance the partition?
134498ba2d7fSLawrence Mitchell 
134598ba2d7fSLawrence Mitchell   Level: intermediate
134698ba2d7fSLawrence Mitchell 
134798ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance()
134898ba2d7fSLawrence Mitchell @*/
134998ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
135098ba2d7fSLawrence Mitchell {
135198ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
135298ba2d7fSLawrence Mitchell 
135398ba2d7fSLawrence Mitchell   PetscFunctionBegin;
135498ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
135598ba2d7fSLawrence Mitchell   PetscValidIntPointer(flg, 2);
135698ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
135798ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
135898ba2d7fSLawrence Mitchell }
135998ba2d7fSLawrence Mitchell 
1360f5bf2dbfSMichael Lange /*@C
1361f5bf2dbfSMichael Lange   DMPlexDerivePointSF - Build a point SF from an SF describing a point migration
1362f5bf2dbfSMichael Lange 
1363f5bf2dbfSMichael Lange   Input Parameter:
1364f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1365f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
13661627f6ccSMichael Lange . ownership   - Flag causing a vote to determine point ownership
1367f5bf2dbfSMichael Lange 
1368f5bf2dbfSMichael Lange   Output Parameter:
1369f5bf2dbfSMichael Lange - pointSF     - The star forest describing the point overlap in the remapped DM
1370f5bf2dbfSMichael Lange 
1371f5bf2dbfSMichael Lange   Level: developer
1372f5bf2dbfSMichael Lange 
1373f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
1374f5bf2dbfSMichael Lange @*/
1375f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1376f5bf2dbfSMichael Lange {
137723193802SMatthew G. Knepley   PetscMPIInt        rank, size;
13781627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1379f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1380f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1381f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1382f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
138323193802SMatthew G. Knepley   Vec                shifts;
1384cae3e4f3SLawrence Mitchell   const PetscInt     numShifts = 13759;
138523193802SMatthew G. Knepley   const PetscScalar *shift = NULL;
138623193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
138798ba2d7fSLawrence Mitchell   PetscBool          balance;
1388f5bf2dbfSMichael Lange   PetscErrorCode     ierr;
1389f5bf2dbfSMichael Lange 
1390f5bf2dbfSMichael Lange   PetscFunctionBegin;
1391f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1392f5bf2dbfSMichael Lange   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
1393ab0bc224SMatthew G. Knepley   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
1394f5bf2dbfSMichael Lange 
139598ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
1396f5bf2dbfSMichael Lange   ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr);
1397f5bf2dbfSMichael Lange   ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr);
1398f5bf2dbfSMichael Lange   if (ownership) {
139923193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
140098ba2d7fSLawrence Mitchell     if (balance) {
140123193802SMatthew G. Knepley       PetscRandom r;
140223193802SMatthew G. Knepley 
140323193802SMatthew G. Knepley       ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr);
1404cae3e4f3SLawrence Mitchell       ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr);
140523193802SMatthew G. Knepley       ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr);
140623193802SMatthew G. Knepley       ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr);
140723193802SMatthew G. Knepley       ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr);
140823193802SMatthew G. Knepley       ierr = VecSetRandom(shifts, r);CHKERRQ(ierr);
140923193802SMatthew G. Knepley       ierr = PetscRandomDestroy(&r);CHKERRQ(ierr);
141023193802SMatthew G. Knepley       ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr);
141123193802SMatthew G. Knepley     }
141223193802SMatthew G. Knepley 
141323193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1414f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
141523193802SMatthew G. Knepley       if (shiftDebug) {
1416e7bcd635SMatthew G. Knepley         ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr);
141723193802SMatthew G. Knepley       }
1418f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1419e7bcd635SMatthew G. Knepley       leafNodes[p].rank  = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size;
142043f7d02bSMichael Lange       leafNodes[p].index = p;
1421f5bf2dbfSMichael Lange     }
1422f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
14231627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1424f5bf2dbfSMichael Lange       rootNodes[p].rank  = -3;
1425f5bf2dbfSMichael Lange       rootNodes[p].index = -3;
1426f5bf2dbfSMichael Lange     }
1427f5bf2dbfSMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr);
1428f5bf2dbfSMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr);
142998ba2d7fSLawrence Mitchell     if (balance) {
1430c091126eSLawrence Mitchell       /* We've voted, now we need to get the rank.  When we're balancing the partition, the "rank" in rootNotes is not
1431c091126eSLawrence Mitchell        * the rank but rather (rank + random)%size.  So we do another reduction, voting the same way, but sending the
1432c091126eSLawrence Mitchell        * rank instead of the index. */
1433c091126eSLawrence Mitchell       PetscSFNode *rootRanks = NULL;
1434c091126eSLawrence Mitchell       ierr = PetscMalloc1(nroots, &rootRanks);CHKERRQ(ierr);
1435c091126eSLawrence Mitchell       for (p = 0; p < nroots; p++) {
1436c091126eSLawrence Mitchell         rootRanks[p].rank = -3;
1437c091126eSLawrence Mitchell         rootRanks[p].index = -3;
1438c091126eSLawrence Mitchell       }
1439c091126eSLawrence Mitchell       for (p = 0; p < nleaves; p++) leafNodes[p].index = rank;
1440c091126eSLawrence Mitchell       ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr);
1441c091126eSLawrence Mitchell       ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr);
1442c091126eSLawrence Mitchell       for (p = 0; p < nroots; p++) rootNodes[p].rank = rootRanks[p].index;
1443c091126eSLawrence Mitchell       ierr = PetscFree(rootRanks);CHKERRQ(ierr);
1444c091126eSLawrence Mitchell     }
1445f5bf2dbfSMichael Lange   } else {
1446f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1447f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1448f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1449f5bf2dbfSMichael Lange     };
1450f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1451f5bf2dbfSMichael Lange       /* Write new local id into old location */
1452f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
14536462276dSToby Isaac         rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1454f5bf2dbfSMichael Lange       }
1455f5bf2dbfSMichael Lange     }
1456f5bf2dbfSMichael Lange   }
1457f5bf2dbfSMichael Lange   ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1458f5bf2dbfSMichael Lange   ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1459f5bf2dbfSMichael Lange 
146023193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1461b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
146223193802SMatthew G. Knepley   }
14631627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr);
14641627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr);
1465f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1466b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
1467f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1468f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1469f5bf2dbfSMichael Lange       idx++;
1470f5bf2dbfSMichael Lange     }
1471f5bf2dbfSMichael Lange   }
147223193802SMatthew G. Knepley   if (shift) {
147323193802SMatthew G. Knepley     ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr);
147423193802SMatthew G. Knepley     ierr = VecDestroy(&shifts);CHKERRQ(ierr);
147523193802SMatthew G. Knepley   }
147623193802SMatthew G. Knepley   if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);}
1477f5bf2dbfSMichael Lange   ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr);
14781627f6ccSMichael Lange   ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr);
1479f5bf2dbfSMichael Lange   ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
1480f5bf2dbfSMichael Lange   ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr);
1481f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1482f5bf2dbfSMichael Lange }
1483f5bf2dbfSMichael Lange 
148415078cd4SMichael Lange /*@C
148515078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
148615078cd4SMichael Lange 
148783655b49SVáclav Hapla   Collective on DM and PetscSF
148883655b49SVáclav Hapla 
148915078cd4SMichael Lange   Input Parameter:
149015078cd4SMichael Lange + dm       - The source DMPlex object
14911627f6ccSMichael Lange . sf       - The star forest communication context describing the migration pattern
149215078cd4SMichael Lange 
149315078cd4SMichael Lange   Output Parameter:
149415078cd4SMichael Lange - targetDM - The target DMPlex object
149515078cd4SMichael Lange 
1496b9f40539SMichael Lange   Level: intermediate
149715078cd4SMichael Lange 
149815078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
149915078cd4SMichael Lange @*/
1500b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
150115078cd4SMichael Lange {
1502b9f40539SMichael Lange   MPI_Comm               comm;
1503cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1504b9f40539SMichael Lange   PetscSF                sfPoint;
150515078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1506ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
1507b9f40539SMichael Lange   PetscBool              flg;
150815078cd4SMichael Lange   PetscErrorCode         ierr;
150915078cd4SMichael Lange 
151015078cd4SMichael Lange   PetscFunctionBegin;
151115078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15121b858b30SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
1513b9f40539SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
151415078cd4SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
151515078cd4SMichael Lange   ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr);
1516cc1750acSStefano Zampini   ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr);
1517cc1750acSStefano Zampini   ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr);
151815078cd4SMichael Lange 
1519bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
1520b9f40539SMichael Lange   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
1521b9f40539SMichael Lange   ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
1522bfb0467fSMichael Lange   if (nroots >= 0) {
1523b9f40539SMichael Lange     IS        isOriginal;
1524ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1525ac04eaf7SToby Isaac     PetscInt  *numbering_orig, *numbering_new;
1526367003a6SStefano Zampini 
1527b9f40539SMichael Lange     /* Get the original point numbering */
1528b9f40539SMichael Lange     ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr);
1529b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal);CHKERRQ(ierr);
1530b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr);
1531b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1532b9f40539SMichael Lange     /* Convert to positive global numbers */
1533b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1534b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
1535b9f40539SMichael Lange     ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
1536b9f40539SMichael Lange     ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr);
1537b9f40539SMichael Lange     ierr = PetscSFBcastBegin(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr);
1538b9f40539SMichael Lange     ierr = PetscSFBcastEnd(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr);
1539b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, (const PetscInt*) numbering_new, PETSC_OWN_POINTER, &ltogMigration);CHKERRQ(ierr);
1540b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1541b9f40539SMichael Lange     ierr = ISDestroy(&isOriginal);CHKERRQ(ierr);
154215078cd4SMichael Lange   } else {
1543bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
154415078cd4SMichael Lange     ierr = ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration);CHKERRQ(ierr);
154515078cd4SMichael Lange   }
1546c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
1547b9f40539SMichael Lange   if (flg) {
1548b9f40539SMichael Lange     ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr);
1549b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr);
1550b9f40539SMichael Lange   }
155115078cd4SMichael Lange   /* Migrate DM data to target DM */
1552ac04eaf7SToby Isaac   ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
155315078cd4SMichael Lange   ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr);
15540dc1530dSSander Arens   ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr);
155515078cd4SMichael Lange   ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr);
155608633170SToby Isaac   ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
1557ac04eaf7SToby Isaac   ierr = ISLocalToGlobalMappingDestroy(&ltogOriginal);CHKERRQ(ierr);
1558302440fdSBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&ltogMigration);CHKERRQ(ierr);
15591b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
156015078cd4SMichael Lange   PetscFunctionReturn(0);
156115078cd4SMichael Lange }
156215078cd4SMichael Lange 
1563*825f8a23SLisandro Dalcin PETSC_INTERN PetscErrorCode DMPlexPartitionLabelClosure_Private(DM,DMLabel,PetscInt,PetscInt,const PetscInt[],IS*);
1564*825f8a23SLisandro Dalcin 
15653b8f15a2SMatthew G. Knepley /*@C
156670034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
156770034214SMatthew G. Knepley 
156883655b49SVáclav Hapla   Collective on DM
156970034214SMatthew G. Knepley 
157070034214SMatthew G. Knepley   Input Parameter:
157170034214SMatthew G. Knepley + dm  - The original DMPlex object
157270034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
157370034214SMatthew G. Knepley 
157470034214SMatthew G. Knepley   Output Parameter:
1575f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1576f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
157770034214SMatthew G. Knepley 
1578f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
157970034214SMatthew G. Knepley 
1580b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
158170034214SMatthew G. Knepley   representation on the mesh.
158270034214SMatthew G. Knepley 
158370034214SMatthew G. Knepley   Level: intermediate
158470034214SMatthew G. Knepley 
158570034214SMatthew G. Knepley .keywords: mesh, elements
1586b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency()
158770034214SMatthew G. Knepley @*/
158880cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
158970034214SMatthew G. Knepley {
159070034214SMatthew G. Knepley   MPI_Comm               comm;
159115078cd4SMichael Lange   PetscPartitioner       partitioner;
1592f8987ae8SMichael Lange   IS                     cellPart;
1593f8987ae8SMichael Lange   PetscSection           cellPartSection;
1594cf86098cSMatthew G. Knepley   DM                     dmCoord;
1595f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
159643f7d02bSMichael Lange   PetscSF                sfProcess, sfMigration, sfStratified, sfPoint;
159798ba2d7fSLawrence Mitchell   PetscBool              flg, balance;
15989852e123SBarry Smith   PetscMPIInt            rank, size, p;
159970034214SMatthew G. Knepley   PetscErrorCode         ierr;
160070034214SMatthew G. Knepley 
160170034214SMatthew G. Knepley   PetscFunctionBegin;
160270034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1603d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1604d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf,3);
1605d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel,4);
160670034214SMatthew G. Knepley 
16070c86c063SLisandro Dalcin   if (sf) *sf = NULL;
16080c86c063SLisandro Dalcin   *dmParallel = NULL;
160970034214SMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
161070034214SMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
16119852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
16120c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
161370034214SMatthew G. Knepley 
16140c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
161515078cd4SMichael Lange   /* Create cell partition */
161667eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
161777623264SMatthew G. Knepley   ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr);
161815078cd4SMichael Lange   ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr);
161915078cd4SMichael Lange   ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr);
1620f8987ae8SMichael Lange   {
1621f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1622*825f8a23SLisandro Dalcin     IS         is;
1623*825f8a23SLisandro Dalcin     PetscHSetI ht;
1624*825f8a23SLisandro Dalcin     PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks, *iranks;
1625f8987ae8SMichael Lange     const PetscInt *points;
1626*825f8a23SLisandro Dalcin 
1627d67d17b1SMatthew G. Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr);
1628*825f8a23SLisandro Dalcin     /* Preallocate strata */
1629*825f8a23SLisandro Dalcin     ierr = PetscHSetICreate(&ht);CHKERRQ(ierr);
1630*825f8a23SLisandro Dalcin     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1631*825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
1632*825f8a23SLisandro Dalcin       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1633*825f8a23SLisandro Dalcin       if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);}
1634*825f8a23SLisandro Dalcin     }
1635*825f8a23SLisandro Dalcin     ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr);
1636*825f8a23SLisandro Dalcin     ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr);
1637*825f8a23SLisandro Dalcin     ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr);
1638*825f8a23SLisandro Dalcin     ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr);
1639*825f8a23SLisandro Dalcin     ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr);
1640*825f8a23SLisandro Dalcin     ierr = PetscFree(iranks);CHKERRQ(ierr);
1641*825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
1642f8987ae8SMichael Lange     ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr);
1643f8987ae8SMichael Lange     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1644f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
1645f8987ae8SMichael Lange       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1646*825f8a23SLisandro Dalcin       if (!npoints) continue;
1647*825f8a23SLisandro Dalcin       ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr);
1648*825f8a23SLisandro Dalcin       ierr = DMPlexPartitionLabelClosure_Private(dm, lblPartition, proc, npoints, points+poff, &is);CHKERRQ(ierr);
1649*825f8a23SLisandro Dalcin       ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr);
1650*825f8a23SLisandro Dalcin       ierr = ISDestroy(&is);CHKERRQ(ierr);
1651f8987ae8SMichael Lange     }
1652f8987ae8SMichael Lange     ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr);
1653f8987ae8SMichael Lange   }
1654f8987ae8SMichael Lange   {
1655f8987ae8SMichael Lange     /* Build a global process SF */
1656f8987ae8SMichael Lange     PetscSFNode *remoteProc;
16579852e123SBarry Smith     ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr);
16589852e123SBarry Smith     for (p = 0; p < size; ++p) {
1659f8987ae8SMichael Lange       remoteProc[p].rank  = p;
1660f8987ae8SMichael Lange       remoteProc[p].index = rank;
1661f8987ae8SMichael Lange     }
1662f8987ae8SMichael Lange     ierr = PetscSFCreate(comm, &sfProcess);CHKERRQ(ierr);
1663f8987ae8SMichael Lange     ierr = PetscObjectSetName((PetscObject) sfProcess, "Process SF");CHKERRQ(ierr);
16649852e123SBarry Smith     ierr = PetscSFSetGraph(sfProcess, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr);
1665f8987ae8SMichael Lange   }
1666d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr);
1667f8987ae8SMichael Lange   ierr = DMPlexPartitionLabelInvert(dm, lblPartition, sfProcess, lblMigration);CHKERRQ(ierr);
1668302440fdSBarry Smith   ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr);
166943f7d02bSMichael Lange   /* Stratify the SF in case we are migrating an already parallel plex */
167043f7d02bSMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr);
167143f7d02bSMichael Lange   ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
167243f7d02bSMichael Lange   sfMigration = sfStratified;
167367eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1674c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
167570034214SMatthew G. Knepley   if (flg) {
1676f8987ae8SMichael Lange     ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1677f8987ae8SMichael Lange     ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
167870034214SMatthew G. Knepley   }
1679f8987ae8SMichael Lange 
168015078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
168170034214SMatthew G. Knepley   ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr);
168270034214SMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr);
1683b9f40539SMichael Lange   ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr);
168470034214SMatthew G. Knepley 
1685a157612eSMichael Lange   /* Build the point SF without overlap */
168698ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
168798ba2d7fSLawrence Mitchell   ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr);
16881627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr);
1689f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr);
1690cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr);
1691cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1692f5bf2dbfSMichael Lange   if (flg) {ierr = PetscSFView(sfPoint, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);}
169370034214SMatthew G. Knepley 
1694a157612eSMichael Lange   if (overlap > 0) {
169515078cd4SMichael Lange     DM                 dmOverlap;
169615078cd4SMichael Lange     PetscInt           nroots, nleaves;
169715078cd4SMichael Lange     PetscSFNode       *newRemote;
169815078cd4SMichael Lange     const PetscSFNode *oldRemote;
169915078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1700a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
1701b9f40539SMichael Lange     ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr);
1702a157612eSMichael Lange     ierr = DMDestroy(dmParallel);CHKERRQ(ierr);
1703a157612eSMichael Lange     *dmParallel = dmOverlap;
1704c389ea9fSToby Isaac     if (flg) {
17053d822a50SMichael Lange       ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr);
170615078cd4SMichael Lange       ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr);
1707c389ea9fSToby Isaac     }
170843331d4aSMichael Lange 
1709f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
1710f8987ae8SMichael Lange     ierr = PetscSFGetGraph(sfMigration, &nroots, NULL, NULL, &oldRemote);CHKERRQ(ierr);
171115078cd4SMichael Lange     ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
171243331d4aSMichael Lange     ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr);
171315078cd4SMichael Lange     ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
171415078cd4SMichael Lange     ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
171515078cd4SMichael Lange     ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr);
171615078cd4SMichael Lange     ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
171715078cd4SMichael Lange     ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1718f8987ae8SMichael Lange     ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
171915078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1720c389ea9fSToby Isaac   }
1721bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
1722f8987ae8SMichael Lange   ierr = PetscSFDestroy(&sfProcess);CHKERRQ(ierr);
1723f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr);
1724f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr);
17254eca1733SMichael Lange   ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr);
17264eca1733SMichael Lange   ierr = ISDestroy(&cellPart);CHKERRQ(ierr);
1727721cbd76SMatthew G. Knepley   /* Copy BC */
1728a6ba4734SToby Isaac   ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr);
172966fe0bfeSMatthew G. Knepley   /* Create sfNatural */
173066fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
173166fe0bfeSMatthew G. Knepley     PetscSection section;
173266fe0bfeSMatthew G. Knepley 
1733e87a4003SBarry Smith     ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
17340c1f158bSMatthew G. Knepley     ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr);
17350e663481SBlaise Bourdin     ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr);
173666fe0bfeSMatthew G. Knepley   }
1737721cbd76SMatthew G. Knepley   /* Cleanup */
1738f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
1739f8987ae8SMichael Lange   else    {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);}
1740f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
174170034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
174270034214SMatthew G. Knepley   PetscFunctionReturn(0);
174370034214SMatthew G. Knepley }
1744a157612eSMichael Lange 
1745a157612eSMichael Lange /*@C
174624cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1747a157612eSMichael Lange 
174883655b49SVáclav Hapla   Collective on DM
1749a157612eSMichael Lange 
1750a157612eSMichael Lange   Input Parameter:
1751a157612eSMichael Lange + dm  - The non-overlapping distrbuted DMPlex object
17520c86c063SLisandro Dalcin - overlap - The overlap of partitions
1753a157612eSMichael Lange 
1754a157612eSMichael Lange   Output Parameter:
1755a157612eSMichael Lange + sf - The PetscSF used for point distribution
1756a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1757a157612eSMichael Lange 
1758a157612eSMichael Lange   Note: If the mesh was not distributed, the return value is NULL.
1759a157612eSMichael Lange 
1760b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1761a157612eSMichael Lange   representation on the mesh.
1762a157612eSMichael Lange 
1763a157612eSMichael Lange   Level: intermediate
1764a157612eSMichael Lange 
1765a157612eSMichael Lange .keywords: mesh, elements
1766b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency()
1767a157612eSMichael Lange @*/
1768b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1769a157612eSMichael Lange {
1770a157612eSMichael Lange   MPI_Comm               comm;
17713567eaeeSMatthew G. Knepley   PetscMPIInt            size, rank;
1772a157612eSMichael Lange   PetscSection           rootSection, leafSection;
1773a157612eSMichael Lange   IS                     rootrank, leafrank;
1774cf86098cSMatthew G. Knepley   DM                     dmCoord;
1775a9f1d5b2SMichael Lange   DMLabel                lblOverlap;
1776f5bf2dbfSMichael Lange   PetscSF                sfOverlap, sfStratified, sfPoint;
1777a157612eSMichael Lange   PetscErrorCode         ierr;
1778a157612eSMichael Lange 
1779a157612eSMichael Lange   PetscFunctionBegin;
1780a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1781a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1782a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1783a157612eSMichael Lange 
17840c86c063SLisandro Dalcin   if (sf) *sf = NULL;
17850c86c063SLisandro Dalcin   *dmOverlap  = NULL;
1786a157612eSMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
17873567eaeeSMatthew G. Knepley   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
1788a157612eSMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
17890c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1790a157612eSMichael Lange 
17910c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1792a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
179367eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1794a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr);
1795a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr);
1796a157612eSMichael Lange   ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr);
1797a9f1d5b2SMichael Lange   ierr = DMPlexCreateOverlap(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr);
1798a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
1799a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr);
1800a9f1d5b2SMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr);
1801a9f1d5b2SMichael Lange   ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1802a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
1803a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr);
1804a9f1d5b2SMichael Lange   ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr);
1805a9f1d5b2SMichael Lange 
180615fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr);
180715fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr);
180815fff7beSMatthew G. Knepley   ierr = ISDestroy(&rootrank);CHKERRQ(ierr);
180915fff7beSMatthew G. Knepley   ierr = ISDestroy(&leafrank);CHKERRQ(ierr);
181067eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1811a157612eSMichael Lange 
1812a157612eSMichael Lange   /* Build the overlapping DM */
1813a157612eSMichael Lange   ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr);
1814a157612eSMichael Lange   ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr);
1815a9f1d5b2SMichael Lange   ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr);
1816f5bf2dbfSMichael Lange   /* Build the new point SF */
18171627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
1818f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr);
1819cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr);
1820cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1821f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1822a157612eSMichael Lange   /* Cleanup overlap partition */
1823a9f1d5b2SMichael Lange   ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr);
1824a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
1825a9f1d5b2SMichael Lange   else    {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);}
18261b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1827a157612eSMichael Lange   PetscFunctionReturn(0);
1828a157612eSMichael Lange }
18296462276dSToby Isaac 
18306462276dSToby Isaac /*@C
18316462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
18326462276dSToby Isaac   root process of the original's communicator.
18336462276dSToby Isaac 
183483655b49SVáclav Hapla   Collective on DM
183583655b49SVáclav Hapla 
18366462276dSToby Isaac   Input Parameters:
18376462276dSToby Isaac . dm - the original DMPlex object
18386462276dSToby Isaac 
18396462276dSToby Isaac   Output Parameters:
1840a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1841a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
18426462276dSToby Isaac 
18436462276dSToby Isaac   Level: intermediate
18446462276dSToby Isaac 
18456462276dSToby Isaac .keywords: mesh
18466462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM()
18476462276dSToby Isaac @*/
1848a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
18496462276dSToby Isaac {
18506462276dSToby Isaac   MPI_Comm       comm;
18516462276dSToby Isaac   PetscMPIInt    size;
18526462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
18536462276dSToby Isaac   PetscErrorCode ierr;
18546462276dSToby Isaac 
18556462276dSToby Isaac   PetscFunctionBegin;
18566462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
18570c86c063SLisandro Dalcin   PetscValidPointer(gatherMesh,2);
18580c86c063SLisandro Dalcin   *gatherMesh = NULL;
1859a13df41bSStefano Zampini   if (sf) *sf = NULL;
18606462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
18616462276dSToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
18626462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
18636462276dSToby Isaac   ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr);
18646462276dSToby Isaac   ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr);
18656462276dSToby Isaac   ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr);
18666462276dSToby Isaac   ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr);
18676462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr);
1868a13df41bSStefano Zampini   ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr);
1869a13df41bSStefano Zampini 
18706462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr);
18716462276dSToby Isaac   ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr);
18726462276dSToby Isaac   ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr);
18736462276dSToby Isaac   PetscFunctionReturn(0);
18746462276dSToby Isaac }
18756462276dSToby Isaac 
18766462276dSToby Isaac /*@C
18776462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
18786462276dSToby Isaac 
187983655b49SVáclav Hapla   Collective on DM
188083655b49SVáclav Hapla 
18816462276dSToby Isaac   Input Parameters:
18826462276dSToby Isaac . dm - the original DMPlex object
18836462276dSToby Isaac 
18846462276dSToby Isaac   Output Parameters:
1885a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1886a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
18876462276dSToby Isaac 
18886462276dSToby Isaac   Level: intermediate
18896462276dSToby Isaac 
18906462276dSToby Isaac .keywords: mesh
18916462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM()
18926462276dSToby Isaac @*/
1893a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
18946462276dSToby Isaac {
18956462276dSToby Isaac   MPI_Comm       comm;
18966462276dSToby Isaac   PetscMPIInt    size, rank;
18976462276dSToby Isaac   PetscInt       pStart, pEnd, p;
18986462276dSToby Isaac   PetscInt       numPoints = -1;
1899a13df41bSStefano Zampini   PetscSF        migrationSF, sfPoint, gatherSF;
19006462276dSToby Isaac   DM             gatherDM, dmCoord;
19016462276dSToby Isaac   PetscSFNode    *points;
19026462276dSToby Isaac   PetscErrorCode ierr;
19036462276dSToby Isaac 
19046462276dSToby Isaac   PetscFunctionBegin;
19056462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
19060c86c063SLisandro Dalcin   PetscValidPointer(redundantMesh,2);
19070c86c063SLisandro Dalcin   *redundantMesh = NULL;
19086462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
19096462276dSToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
191068dbc166SMatthew G. Knepley   if (size == 1) {
191168dbc166SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
191268dbc166SMatthew G. Knepley     *redundantMesh = dm;
1913a13df41bSStefano Zampini     if (sf) *sf = NULL;
191468dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
191568dbc166SMatthew G. Knepley   }
1916a13df41bSStefano Zampini   ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr);
19176462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
19186462276dSToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
19196462276dSToby Isaac   ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr);
19206462276dSToby Isaac   numPoints = pEnd - pStart;
19216462276dSToby Isaac   ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr);
19226462276dSToby Isaac   ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr);
19236462276dSToby Isaac   ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr);
19246462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
19256462276dSToby Isaac     points[p].index = p;
19266462276dSToby Isaac     points[p].rank  = 0;
19276462276dSToby Isaac   }
19286462276dSToby Isaac   ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr);
19296462276dSToby Isaac   ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr);
19306462276dSToby Isaac   ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr);
19316462276dSToby Isaac   ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr);
19326462276dSToby Isaac   ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
19336462276dSToby Isaac   ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr);
19346462276dSToby Isaac   ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr);
19356462276dSToby Isaac   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
19366462276dSToby Isaac   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1937a13df41bSStefano Zampini   if (sf) {
1938a13df41bSStefano Zampini     PetscSF tsf;
1939a13df41bSStefano Zampini 
1940a13df41bSStefano Zampini     ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr);
1941a13df41bSStefano Zampini     ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr);
1942a13df41bSStefano Zampini     ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr);
1943a13df41bSStefano Zampini   }
19446462276dSToby Isaac   ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr);
1945a13df41bSStefano Zampini   ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr);
19466462276dSToby Isaac   ierr = DMDestroy(&gatherDM);CHKERRQ(ierr);
19476462276dSToby Isaac   PetscFunctionReturn(0);
19486462276dSToby Isaac }
1949