1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser() 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 393c1f0c11SLawrence Mitchell - user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser() 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 975b317d89SToby Isaac PetscValidIntPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley PetscErrorCode ierr; 10770034214SMatthew G. Knepley 10870034214SMatthew G. Knepley PetscFunctionBeginHot; 10970034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 11070034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 1114b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1124b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11370034214SMatthew G. Knepley const PetscInt *support = NULL; 11470034214SMatthew G. Knepley PetscInt supportSize, s, q; 11570034214SMatthew G. Knepley 1164b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 1174b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 11870034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 119527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 12070034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12170034214SMatthew G. Knepley } 12270034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley } 12570034214SMatthew G. Knepley *adjSize = numAdj; 12670034214SMatthew G. Knepley PetscFunctionReturn(0); 12770034214SMatthew G. Knepley } 12870034214SMatthew G. Knepley 12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 13070034214SMatthew G. Knepley { 13170034214SMatthew G. Knepley const PetscInt *support = NULL; 13270034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13370034214SMatthew G. Knepley PetscErrorCode ierr; 13470034214SMatthew G. Knepley 13570034214SMatthew G. Knepley PetscFunctionBeginHot; 13670034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 13770034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 1384b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1394b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 14070034214SMatthew G. Knepley const PetscInt *cone = NULL; 14170034214SMatthew G. Knepley PetscInt coneSize, c, q; 14270034214SMatthew G. Knepley 1434b6b44bdSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1444b6b44bdSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 14570034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 146527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14770034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 15070034214SMatthew G. Knepley } 15170034214SMatthew G. Knepley } 15270034214SMatthew G. Knepley *adjSize = numAdj; 15370034214SMatthew G. Knepley PetscFunctionReturn(0); 15470034214SMatthew G. Knepley } 15570034214SMatthew G. Knepley 15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15770034214SMatthew G. Knepley { 15870034214SMatthew G. Knepley PetscInt *star = NULL; 15970034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 16070034214SMatthew G. Knepley PetscErrorCode ierr; 16170034214SMatthew G. Knepley 16270034214SMatthew G. Knepley PetscFunctionBeginHot; 16370034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 16470034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16570034214SMatthew G. Knepley const PetscInt *closure = NULL; 16670034214SMatthew G. Knepley PetscInt closureSize, c, q; 16770034214SMatthew G. Knepley 16870034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 16970034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 170527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 17170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 17270034214SMatthew G. Knepley } 17370034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 17470034214SMatthew G. Knepley } 17570034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 17670034214SMatthew G. Knepley } 17770034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 17870034214SMatthew G. Knepley *adjSize = numAdj; 17970034214SMatthew G. Knepley PetscFunctionReturn(0); 18070034214SMatthew G. Knepley } 18170034214SMatthew G. Knepley 1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18370034214SMatthew G. Knepley { 18479bad331SMatthew G. Knepley static PetscInt asiz = 0; 1858b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1868b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1878b0b4c70SToby Isaac PetscInt maxAdjSize; 1888b0b4c70SToby Isaac PetscSection aSec = NULL; 1898b0b4c70SToby Isaac IS aIS = NULL; 1908b0b4c70SToby Isaac const PetscInt *anchors; 1913c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 19270034214SMatthew G. Knepley PetscErrorCode ierr; 19370034214SMatthew G. Knepley 19470034214SMatthew G. Knepley PetscFunctionBeginHot; 1955b317d89SToby Isaac if (useAnchors) { 196a17985deSToby Isaac ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr); 1978b0b4c70SToby Isaac if (aSec) { 1988b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 19924c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 2008b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 2018b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 2028b0b4c70SToby Isaac } 2038b0b4c70SToby Isaac } 20479bad331SMatthew G. Knepley if (!*adj) { 20524c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20679bad331SMatthew G. Knepley 20724c766afSToby Isaac ierr = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr); 20879bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 20924c766afSToby Isaac ierr = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr); 21024c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 21124c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 21224c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2138b0b4c70SToby Isaac asiz *= maxAnchors; 21424c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 21579bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 21679bad331SMatthew G. Knepley } 21779bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2188b0b4c70SToby Isaac maxAdjSize = *adjSize; 2193c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2203c1f0c11SLawrence Mitchell ierr = mesh->useradjacency(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr); 2213c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 22279bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 22370034214SMatthew G. Knepley } else if (useCone) { 22479bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22570034214SMatthew G. Knepley } else { 22679bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22770034214SMatthew G. Knepley } 2285b317d89SToby Isaac if (useAnchors && aSec) { 2298b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2308b0b4c70SToby Isaac PetscInt numAdj = origSize; 2318b0b4c70SToby Isaac PetscInt i = 0, j; 2328b0b4c70SToby Isaac PetscInt *orig = *adj; 2338b0b4c70SToby Isaac 2348b0b4c70SToby Isaac while (i < origSize) { 2358b0b4c70SToby Isaac PetscInt p = orig[i]; 2368b0b4c70SToby Isaac PetscInt aDof = 0; 2378b0b4c70SToby Isaac 2388b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2398b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 2408b0b4c70SToby Isaac } 2418b0b4c70SToby Isaac if (aDof) { 2428b0b4c70SToby Isaac PetscInt aOff; 2438b0b4c70SToby Isaac PetscInt s, q; 2448b0b4c70SToby Isaac 2458b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2468b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2478b0b4c70SToby Isaac } 2488b0b4c70SToby Isaac origSize--; 2498b0b4c70SToby Isaac numAdj--; 2508b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 2518b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 252527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2538b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2548b0b4c70SToby Isaac } 2558b0b4c70SToby Isaac if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 2568b0b4c70SToby Isaac } 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac else { 2598b0b4c70SToby Isaac i++; 2608b0b4c70SToby Isaac } 2618b0b4c70SToby Isaac } 2628b0b4c70SToby Isaac *adjSize = numAdj; 2638b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 2648b0b4c70SToby Isaac } 26570034214SMatthew G. Knepley PetscFunctionReturn(0); 26670034214SMatthew G. Knepley } 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley /*@ 26970034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 27070034214SMatthew G. Knepley 27170034214SMatthew G. Knepley Input Parameters: 27270034214SMatthew G. Knepley + dm - The DM object 27370034214SMatthew G. Knepley . p - The point 27470034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE 27570034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize 27670034214SMatthew G. Knepley 27770034214SMatthew G. Knepley Output Parameters: 27870034214SMatthew G. Knepley + adjSize - The number of adjacent points 27970034214SMatthew G. Knepley - adj - The adjacent points 28070034214SMatthew G. Knepley 28170034214SMatthew G. Knepley Level: advanced 28270034214SMatthew G. Knepley 28395452b02SPatrick Sanan Notes: 28495452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28570034214SMatthew G. Knepley 286b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 28770034214SMatthew G. Knepley @*/ 28870034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 28970034214SMatthew G. Knepley { 2901cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 29170034214SMatthew G. Knepley PetscErrorCode ierr; 29270034214SMatthew G. Knepley 29370034214SMatthew G. Knepley PetscFunctionBeginHot; 29470034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29570034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 29670034214SMatthew G. Knepley PetscValidPointer(adj,4); 297b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 2981cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 2991cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr); 30070034214SMatthew G. Knepley PetscFunctionReturn(0); 30170034214SMatthew G. Knepley } 30208633170SToby Isaac 303b0a623aaSMatthew G. Knepley /*@ 304b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 305b0a623aaSMatthew G. Knepley 306b0a623aaSMatthew G. Knepley Collective on DM 307b0a623aaSMatthew G. Knepley 308b0a623aaSMatthew G. Knepley Input Parameters: 309b0a623aaSMatthew G. Knepley + dm - The DM 310b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity 311b0a623aaSMatthew G. Knepley 312b0a623aaSMatthew G. Knepley Output Parameters: 313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 314b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley Level: developer 317b0a623aaSMatthew G. Knepley 318b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF() 319b0a623aaSMatthew G. Knepley @*/ 320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 321b0a623aaSMatthew G. Knepley { 322b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 323b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 324b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 325b0a623aaSMatthew G. Knepley const PetscInt *nranks; 326b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 327b0a623aaSMatthew G. Knepley PetscBT neighbors; 328b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3299852e123SBarry Smith PetscMPIInt size, proc, rank; 330b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 331b0a623aaSMatthew G. Knepley 332b0a623aaSMatthew G. Knepley PetscFunctionBegin; 333b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 334b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 335b0a623aaSMatthew G. Knepley if (processRanks) {PetscValidPointer(processRanks, 3);} 336b0a623aaSMatthew G. Knepley if (sfProcess) {PetscValidPointer(sfProcess, 4);} 3379852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 338b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 339b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr); 3409852e123SBarry Smith ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr); 3419852e123SBarry Smith ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr); 342b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 343b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr); 344b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr); 345b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 346b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 347b0a623aaSMatthew G. Knepley 348b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr); 349b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr); 350302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 351b0a623aaSMatthew G. Knepley } 352b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr); 353b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 354b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr); 355b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr); 356b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 357b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 358b0a623aaSMatthew G. Knepley 359b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr); 360b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr); 361302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 362b0a623aaSMatthew G. Knepley } 363b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr); 364b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 365b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 366b0a623aaSMatthew G. Knepley /* Calculate edges */ 367b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3689852e123SBarry Smith for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 369b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr); 370b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr); 371b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr); 3729852e123SBarry Smith for(proc = 0, n = 0; proc < size; ++proc) { 373b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 374b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 375b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 376b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 377b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 378b0a623aaSMatthew G. Knepley ++n; 379b0a623aaSMatthew G. Knepley } 380b0a623aaSMatthew G. Knepley } 381b0a623aaSMatthew G. Knepley ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr); 382b0a623aaSMatthew G. Knepley if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);} 383b0a623aaSMatthew G. Knepley else {ierr = PetscFree(ranksNew);CHKERRQ(ierr);} 384b0a623aaSMatthew G. Knepley if (sfProcess) { 385b0a623aaSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr); 386b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr); 387b0a623aaSMatthew G. Knepley ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr); 3889852e123SBarry Smith ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 389b0a623aaSMatthew G. Knepley } 390b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 391b0a623aaSMatthew G. Knepley } 392b0a623aaSMatthew G. Knepley 393b0a623aaSMatthew G. Knepley /*@ 394b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 395b0a623aaSMatthew G. Knepley 396b0a623aaSMatthew G. Knepley Collective on DM 397b0a623aaSMatthew G. Knepley 398b0a623aaSMatthew G. Knepley Input Parameter: 399b0a623aaSMatthew G. Knepley . dm - The DM 400b0a623aaSMatthew G. Knepley 401b0a623aaSMatthew G. Knepley Output Parameters: 402b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 403b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 404b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 405b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 406b0a623aaSMatthew G. Knepley 407b0a623aaSMatthew G. Knepley Level: developer 408b0a623aaSMatthew G. Knepley 409b0a623aaSMatthew G. Knepley .seealso: DMPlexCreateOverlap() 410b0a623aaSMatthew G. Knepley @*/ 411b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 412b0a623aaSMatthew G. Knepley { 413b0a623aaSMatthew G. Knepley MPI_Comm comm; 414b0a623aaSMatthew G. Knepley PetscSF sfPoint; 415b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 416b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 417b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 418b0a623aaSMatthew G. Knepley PetscMPIInt rank; 419b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 420b0a623aaSMatthew G. Knepley 421b0a623aaSMatthew G. Knepley PetscFunctionBegin; 422b0a623aaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 423b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 424b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 425b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 426b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 427b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr); 428b0a623aaSMatthew G. Knepley ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr); 429b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr); 430b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr); 431b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);} 432b0a623aaSMatthew G. Knepley ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr); 433b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 434b0a623aaSMatthew G. Knepley ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr); 435b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr); 436b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(nedges, &remoterank);CHKERRQ(ierr); 437b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 438b0a623aaSMatthew G. Knepley ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 439b0a623aaSMatthew G. Knepley ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 440b0a623aaSMatthew G. Knepley ierr = PetscFree(myrank);CHKERRQ(ierr); 441b0a623aaSMatthew G. Knepley ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr); 442b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 443b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr); 444b0a623aaSMatthew G. Knepley ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr); 445b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 446b0a623aaSMatthew G. Knepley } 447b0a623aaSMatthew G. Knepley 448278397a0SMatthew G. Knepley /*@C 449b0a623aaSMatthew G. Knepley DMPlexCreateOverlap - Compute owner information for shared points. This basically gets two-sided for an SF. 450b0a623aaSMatthew G. Knepley 451b0a623aaSMatthew G. Knepley Collective on DM 452b0a623aaSMatthew G. Knepley 453b0a623aaSMatthew G. Knepley Input Parameters: 454b0a623aaSMatthew G. Knepley + dm - The DM 45524d039d7SMichael Lange . levels - Number of overlap levels 456b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 457b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 458b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 459b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 460b0a623aaSMatthew G. Knepley 461b0a623aaSMatthew G. Knepley Output Parameters: 462a9f1d5b2SMichael Lange + ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 463b0a623aaSMatthew G. Knepley 464b0a623aaSMatthew G. Knepley Level: developer 465b0a623aaSMatthew G. Knepley 4661fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute() 467b0a623aaSMatthew G. Knepley @*/ 468a9f1d5b2SMichael Lange PetscErrorCode DMPlexCreateOverlap(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 469b0a623aaSMatthew G. Knepley { 470e540f424SMichael Lange MPI_Comm comm; 471b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 472*874ddda9SLisandro Dalcin PetscSF sfPoint; 473b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 474b0a623aaSMatthew G. Knepley const PetscInt *local; 4751fd9873aSMichael Lange const PetscInt *nrank, *rrank; 476b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4771fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4789852e123SBarry Smith PetscMPIInt rank, size; 47926a7d390SMatthew G. Knepley PetscBool useCone, useClosure, flg; 480b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 481b0a623aaSMatthew G. Knepley 482b0a623aaSMatthew G. Knepley PetscFunctionBegin; 483e540f424SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 4849852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 485e540f424SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 486b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 487b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 488b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr); 489b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr); 490d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr); 491b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 492b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 493b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 494b0a623aaSMatthew G. Knepley 495df20756eSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr); 496b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);} 497b0a623aaSMatthew G. Knepley } 498b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr); 499b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr); 500b0a623aaSMatthew G. Knepley /* Handle roots */ 501b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 502b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 503b0a623aaSMatthew G. Knepley 504b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 505b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 506b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr); 507b0a623aaSMatthew G. Knepley if (neighbors) { 508b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr); 509b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 510b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 511b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 512b0a623aaSMatthew G. Knepley 513b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 514b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 515b0a623aaSMatthew G. Knepley } 516b0a623aaSMatthew G. Knepley } 517b0a623aaSMatthew G. Knepley } 518b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 519b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr); 520b0a623aaSMatthew G. Knepley if (!neighbors) continue; 521b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr); 522b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 523b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 524b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 525b0a623aaSMatthew G. Knepley 526b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 527b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 528b0a623aaSMatthew G. Knepley } 529b0a623aaSMatthew G. Knepley } 530b0a623aaSMatthew G. Knepley ierr = PetscFree(adj);CHKERRQ(ierr); 531b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr); 532b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr); 53324d039d7SMichael Lange /* Add additional overlap levels */ 534be200f8dSMichael Lange for (l = 1; l < levels; l++) { 535be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 536be200f8dSMichael Lange ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr); 537be200f8dSMichael Lange /* Add next level of point donations to the label */ 538be200f8dSMichael Lange ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr); 539be200f8dSMichael Lange } 54026a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 541b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 54226a7d390SMatthew G. Knepley if (useCone || !useClosure) { 5435abbe4feSMichael Lange ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr); 54426a7d390SMatthew G. Knepley } 545c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr); 546e540f424SMichael Lange if (flg) { 547825f8a23SLisandro Dalcin PetscViewer viewer; 548825f8a23SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr); 549825f8a23SLisandro Dalcin ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr); 550b0a623aaSMatthew G. Knepley } 551*874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 552d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr); 553*874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr); 554a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 555a9f1d5b2SMichael Lange for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 556e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 557a9f1d5b2SMichael Lange ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr); 558a9f1d5b2SMichael Lange ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr); 559e540f424SMichael Lange } 560e540f424SMichael Lange /* Clean up */ 5611fd9873aSMichael Lange ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr); 562b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 563b0a623aaSMatthew G. Knepley } 56470034214SMatthew G. Knepley 56524cc2ca5SMatthew G. Knepley /*@C 56624cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 56724cc2ca5SMatthew G. Knepley 56824cc2ca5SMatthew G. Knepley Collective on DM 56924cc2ca5SMatthew G. Knepley 57024cc2ca5SMatthew G. Knepley Input Parameters: 57124cc2ca5SMatthew G. Knepley + dm - The DM 57224cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 57324cc2ca5SMatthew G. Knepley 57424cc2ca5SMatthew G. Knepley Output Parameters: 57524cc2ca5SMatthew G. Knepley + migrationSF - An SF that maps original points in old locations to points in new locations 57624cc2ca5SMatthew G. Knepley 57724cc2ca5SMatthew G. Knepley Level: developer 57824cc2ca5SMatthew G. Knepley 57924cc2ca5SMatthew G. Knepley .seealso: DMPlexCreateOverlap(), DMPlexDistribute() 58024cc2ca5SMatthew G. Knepley @*/ 58146f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 58246f9b1c3SMichael Lange { 58346f9b1c3SMichael Lange MPI_Comm comm; 5849852e123SBarry Smith PetscMPIInt rank, size; 58546f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 58646f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 58746f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 58846f9b1c3SMichael Lange PetscSFNode *iremote; 58946f9b1c3SMichael Lange PetscSF pointSF; 59046f9b1c3SMichael Lange const PetscInt *sharedLocal; 59146f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 59246f9b1c3SMichael Lange PetscErrorCode ierr; 59346f9b1c3SMichael Lange 59446f9b1c3SMichael Lange PetscFunctionBegin; 59546f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 59646f9b1c3SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 59746f9b1c3SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 5989852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 59946f9b1c3SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 60046f9b1c3SMichael Lange 60146f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 60246f9b1c3SMichael Lange ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr); 60346f9b1c3SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 60446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 60546f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 60646f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 60746f9b1c3SMichael Lange } 60846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 60946f9b1c3SMichael Lange ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 61046f9b1c3SMichael Lange ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 61146f9b1c3SMichael Lange 61246f9b1c3SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 61346f9b1c3SMichael Lange ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr); 61446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 61546f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 61646f9b1c3SMichael Lange depthShift[dim] = 0; 61746f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 61846f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 61946f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 62046f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 62146f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 62246f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 62346f9b1c3SMichael Lange } 62446f9b1c3SMichael Lange 62546f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 62646f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 62746f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 62809b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr); 62909b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr); 63046f9b1c3SMichael Lange /* First map local points to themselves */ 63146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 63246f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 63346f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 63446f9b1c3SMichael Lange point = p + depthShift[d]; 63546f9b1c3SMichael Lange ilocal[point] = point; 63646f9b1c3SMichael Lange iremote[point].index = p; 63746f9b1c3SMichael Lange iremote[point].rank = rank; 63846f9b1c3SMichael Lange depthIdx[d]++; 63946f9b1c3SMichael Lange } 64046f9b1c3SMichael Lange } 64146f9b1c3SMichael Lange 64246f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 64346f9b1c3SMichael Lange ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr); 64446f9b1c3SMichael Lange ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr); 64546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 64646f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 64746f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 64846f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 64946f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 65046f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 65146f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 65246f9b1c3SMichael Lange } 65346f9b1c3SMichael Lange } 65446f9b1c3SMichael Lange } 65546f9b1c3SMichael Lange 65646f9b1c3SMichael Lange /* Now add the incoming overlap points */ 65746f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 65846f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 65946f9b1c3SMichael Lange ilocal[point] = point; 66046f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 66146f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 66246f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 66346f9b1c3SMichael Lange } 66415fff7beSMatthew G. Knepley ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 66546f9b1c3SMichael Lange 66646f9b1c3SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 66746f9b1c3SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr); 66846f9b1c3SMichael Lange ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr); 66946f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 67046f9b1c3SMichael Lange ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 67146f9b1c3SMichael Lange 67246f9b1c3SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 67370034214SMatthew G. Knepley PetscFunctionReturn(0); 67470034214SMatthew G. Knepley } 67570034214SMatthew G. Knepley 676a9f1d5b2SMichael Lange /*@ 677f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 678a9f1d5b2SMichael Lange 679a9f1d5b2SMichael Lange Input Parameter: 680a9f1d5b2SMichael Lange + dm - The DM 681a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 682a9f1d5b2SMichael Lange 683a9f1d5b2SMichael Lange Output Parameter: 684a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 685a9f1d5b2SMichael Lange 686a9f1d5b2SMichael Lange Level: developer 687a9f1d5b2SMichael Lange 688a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap() 689a9f1d5b2SMichael Lange @*/ 690a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 691a9f1d5b2SMichael Lange { 692a9f1d5b2SMichael Lange MPI_Comm comm; 6939852e123SBarry Smith PetscMPIInt rank, size; 6947fab53ddSMatthew G. Knepley PetscInt d, ldepth, depth, p, pStart, pEnd, nroots, nleaves; 695a9f1d5b2SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 696a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 697f0e73a3dSToby Isaac PetscInt hybEnd[4]; 698a9f1d5b2SMichael Lange const PetscSFNode *iremote; 699a9f1d5b2SMichael Lange PetscErrorCode ierr; 700a9f1d5b2SMichael Lange 701a9f1d5b2SMichael Lange PetscFunctionBegin; 702a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 703a9f1d5b2SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 704a9f1d5b2SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 7059852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 7067fab53ddSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr); 707b2566f29SBarry Smith ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 7087fab53ddSMatthew G. Knepley if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth); 709a9f1d5b2SMichael Lange 710a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 711a9f1d5b2SMichael Lange ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr); 712a9f1d5b2SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 713f0e73a3dSToby Isaac ierr = DMPlexGetHybridBounds(dm,&hybEnd[depth],&hybEnd[depth-1],&hybEnd[1],&hybEnd[0]);CHKERRQ(ierr); 7147fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 715a9f1d5b2SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 716f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 717f0e73a3dSToby Isaac if (hybEnd[d] >= 0 && p >= hybEnd[d]) { /* put in a separate value for hybrid points */ 718f0e73a3dSToby Isaac pointDepths[p] = 2 * d; 719f0e73a3dSToby Isaac } else { 720f0e73a3dSToby Isaac pointDepths[p] = 2 * d + 1; 721f0e73a3dSToby Isaac } 722f0e73a3dSToby Isaac } 723a9f1d5b2SMichael Lange } 7247fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1; 725a9f1d5b2SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 726a9f1d5b2SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 727a9f1d5b2SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 728f0e73a3dSToby Isaac ierr = PetscMalloc3(2*(depth+1), &depthRecv, 2*(depth+1), &depthShift, 2*(depth+1), &depthIdx);CHKERRQ(ierr); 729f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) depthRecv[d] = 0; 7307fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++; 731f0e73a3dSToby Isaac depthShift[2*depth+1] = 0; 732f0e73a3dSToby Isaac for (d = 0; d < 2*depth+1; ++d) depthShift[d] = depthRecv[2 * depth + 1]; 733f0e73a3dSToby Isaac for (d = 0; d < 2*depth; ++d) depthShift[d] += depthRecv[2 * depth]; 734f0e73a3dSToby Isaac depthShift[0] += depthRecv[1]; 735f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[1]; 736f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[0]; 737f0e73a3dSToby Isaac for (d = 2 * depth-1; d > 2; --d) { 738f0e73a3dSToby Isaac PetscInt e; 739f0e73a3dSToby Isaac 740f0e73a3dSToby Isaac for (e = d -1; e > 1; --e) depthShift[e] += depthRecv[d]; 741f0e73a3dSToby Isaac } 742f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) {depthIdx[d] = 0;} 743a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 744a9f1d5b2SMichael Lange ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 7457fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 7467fab53ddSMatthew G. Knepley const PetscInt dep = remoteDepths[p]; 7477fab53ddSMatthew G. Knepley 7487fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 7497fab53ddSMatthew G. Knepley depthIdx[dep]++; 750a9f1d5b2SMichael Lange } 751a9f1d5b2SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 752a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr); 753a9f1d5b2SMichael Lange ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr); 754a9f1d5b2SMichael Lange ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 755a9f1d5b2SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 756a9f1d5b2SMichael Lange PetscFunctionReturn(0); 757a9f1d5b2SMichael Lange } 758a9f1d5b2SMichael Lange 75970034214SMatthew G. Knepley /*@ 76070034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 76170034214SMatthew G. Knepley 76270034214SMatthew G. Knepley Collective on DM 76370034214SMatthew G. Knepley 76470034214SMatthew G. Knepley Input Parameters: 76570034214SMatthew G. Knepley + dm - The DMPlex object 76670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 76770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 76870034214SMatthew G. Knepley - originalVec - The existing data 76970034214SMatthew G. Knepley 77070034214SMatthew G. Knepley Output Parameters: 77170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 77270034214SMatthew G. Knepley - newVec - The new data 77370034214SMatthew G. Knepley 77470034214SMatthew G. Knepley Level: developer 77570034214SMatthew G. Knepley 77670034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData() 77770034214SMatthew G. Knepley @*/ 77870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 77970034214SMatthew G. Knepley { 78070034214SMatthew G. Knepley PetscSF fieldSF; 78170034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 78270034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 78370034214SMatthew G. Knepley PetscErrorCode ierr; 78470034214SMatthew G. Knepley 78570034214SMatthew G. Knepley PetscFunctionBegin; 78670034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 78770034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 78870034214SMatthew G. Knepley 78970034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 79070034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 79170034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 79270034214SMatthew G. Knepley 79370034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 79470034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 79570034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 7968a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 79770034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 79870034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 79970034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 80070034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 80170034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 80270034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 80370034214SMatthew G. Knepley PetscFunctionReturn(0); 80470034214SMatthew G. Knepley } 80570034214SMatthew G. Knepley 80670034214SMatthew G. Knepley /*@ 80770034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 80870034214SMatthew G. Knepley 80970034214SMatthew G. Knepley Collective on DM 81070034214SMatthew G. Knepley 81170034214SMatthew G. Knepley Input Parameters: 81270034214SMatthew G. Knepley + dm - The DMPlex object 81370034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 81470034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 81570034214SMatthew G. Knepley - originalIS - The existing data 81670034214SMatthew G. Knepley 81770034214SMatthew G. Knepley Output Parameters: 81870034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 81970034214SMatthew G. Knepley - newIS - The new data 82070034214SMatthew G. Knepley 82170034214SMatthew G. Knepley Level: developer 82270034214SMatthew G. Knepley 82370034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData() 82470034214SMatthew G. Knepley @*/ 82570034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 82670034214SMatthew G. Knepley { 82770034214SMatthew G. Knepley PetscSF fieldSF; 82870034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 82970034214SMatthew G. Knepley const PetscInt *originalValues; 83070034214SMatthew G. Knepley PetscErrorCode ierr; 83170034214SMatthew G. Knepley 83270034214SMatthew G. Knepley PetscFunctionBegin; 83370034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 83470034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 83570034214SMatthew G. Knepley 83670034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 837854ce69bSBarry Smith ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr); 83870034214SMatthew G. Knepley 83970034214SMatthew G. Knepley ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr); 84070034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8418a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 842aaf8c182SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 843aaf8c182SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 84470034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 84570034214SMatthew G. Knepley ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr); 84670034214SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr); 84770034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 84870034214SMatthew G. Knepley PetscFunctionReturn(0); 84970034214SMatthew G. Knepley } 85070034214SMatthew G. Knepley 85170034214SMatthew G. Knepley /*@ 85270034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 85370034214SMatthew G. Knepley 85470034214SMatthew G. Knepley Collective on DM 85570034214SMatthew G. Knepley 85670034214SMatthew G. Knepley Input Parameters: 85770034214SMatthew G. Knepley + dm - The DMPlex object 85870034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 85970034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 86070034214SMatthew G. Knepley . datatype - The type of data 86170034214SMatthew G. Knepley - originalData - The existing data 86270034214SMatthew G. Knepley 86370034214SMatthew G. Knepley Output Parameters: 86470034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 86570034214SMatthew G. Knepley - newData - The new data 86670034214SMatthew G. Knepley 86770034214SMatthew G. Knepley Level: developer 86870034214SMatthew G. Knepley 86970034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 87070034214SMatthew G. Knepley @*/ 87170034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 87270034214SMatthew G. Knepley { 87370034214SMatthew G. Knepley PetscSF fieldSF; 87470034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 87570034214SMatthew G. Knepley PetscMPIInt dataSize; 87670034214SMatthew G. Knepley PetscErrorCode ierr; 87770034214SMatthew G. Knepley 87870034214SMatthew G. Knepley PetscFunctionBegin; 87970034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 88070034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 88170034214SMatthew G. Knepley 88270034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 88370034214SMatthew G. Knepley ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr); 88470034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 88570034214SMatthew G. Knepley 88670034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8878a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 88870034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 88970034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 89070034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 89170034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 89270034214SMatthew G. Knepley PetscFunctionReturn(0); 89370034214SMatthew G. Knepley } 89470034214SMatthew G. Knepley 89524cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 896cc71bff1SMichael Lange { 897cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 898cc71bff1SMichael Lange MPI_Comm comm; 899cc71bff1SMichael Lange PetscSF coneSF; 900cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 901ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 902cc71bff1SMichael Lange PetscBool flg; 903cc71bff1SMichael Lange PetscErrorCode ierr; 904cc71bff1SMichael Lange 905cc71bff1SMichael Lange PetscFunctionBegin; 906cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9070c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 908cc71bff1SMichael Lange 9090c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 910cc71bff1SMichael Lange /* Distribute cone section */ 911cc71bff1SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 912cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 913cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr); 914cc71bff1SMichael Lange ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 915cc71bff1SMichael Lange ierr = DMSetUp(dmParallel);CHKERRQ(ierr); 916cc71bff1SMichael Lange { 917cc71bff1SMichael Lange PetscInt pStart, pEnd, p; 918cc71bff1SMichael Lange 919cc71bff1SMichael Lange ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 920cc71bff1SMichael Lange for (p = pStart; p < pEnd; ++p) { 921cc71bff1SMichael Lange PetscInt coneSize; 922cc71bff1SMichael Lange ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 923cc71bff1SMichael Lange pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 924cc71bff1SMichael Lange } 925cc71bff1SMichael Lange } 926cc71bff1SMichael Lange /* Communicate and renumber cones */ 927cc71bff1SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 9288a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 929cc71bff1SMichael Lange ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 930ac04eaf7SToby Isaac if (original) { 931ac04eaf7SToby Isaac PetscInt numCones; 932ac04eaf7SToby Isaac 933367003a6SStefano Zampini ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); 934367003a6SStefano Zampini ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr); 935ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr); 936367003a6SStefano Zampini } else { 937ac04eaf7SToby Isaac globCones = cones; 938ac04eaf7SToby Isaac } 939cc71bff1SMichael Lange ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr); 940ac04eaf7SToby Isaac ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 941ac04eaf7SToby Isaac ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 942ac04eaf7SToby Isaac if (original) { 943ac04eaf7SToby Isaac ierr = PetscFree(globCones);CHKERRQ(ierr); 944ac04eaf7SToby Isaac } 945cc71bff1SMichael Lange ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 946cc71bff1SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 94762795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 9483533c52bSMatthew G. Knepley { 9493533c52bSMatthew G. Knepley PetscInt p; 9503533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 9513533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 952367003a6SStefano Zampini if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);} 9533533c52bSMatthew G. Knepley } 9543533c52bSMatthew G. Knepley if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 9553533c52bSMatthew G. Knepley } 9563533c52bSMatthew G. Knepley #endif 957c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 958cc71bff1SMichael Lange if (flg) { 959cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 960cc71bff1SMichael Lange ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 961cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 962cc71bff1SMichael Lange ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 963cc71bff1SMichael Lange ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 964cc71bff1SMichael Lange } 965cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 966cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr); 967cc71bff1SMichael Lange ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 968cc71bff1SMichael Lange ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 969cc71bff1SMichael Lange ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 970cc71bff1SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 971eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 972cc71bff1SMichael Lange { 973cc71bff1SMichael Lange PetscInt pStart, pEnd; 974cc71bff1SMichael Lange 975cc71bff1SMichael Lange ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 976cc71bff1SMichael Lange ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 977cc71bff1SMichael Lange } 978cc71bff1SMichael Lange ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr); 979cc71bff1SMichael Lange ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr); 9801cf84007SMatthew G. Knepley { 9811cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 9821cf84007SMatthew G. Knepley 983b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 984b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 9851cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 9861cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 9871cf84007SMatthew G. Knepley } 988cc71bff1SMichael Lange PetscFunctionReturn(0); 989cc71bff1SMichael Lange } 990cc71bff1SMichael Lange 99124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 9920df0e737SMichael Lange { 9930df0e737SMichael Lange MPI_Comm comm; 9940df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 9950df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 9960df0e737SMichael Lange PetscInt bs; 99790b157c4SStefano Zampini PetscBool isper; 9980df0e737SMichael Lange const char *name; 9990df0e737SMichael Lange const PetscReal *maxCell, *L; 10005dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 10010df0e737SMichael Lange PetscErrorCode ierr; 10020df0e737SMichael Lange 10030df0e737SMichael Lange PetscFunctionBegin; 10040df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10050c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10060df0e737SMichael Lange 10070df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10080df0e737SMichael Lange ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 10090df0e737SMichael Lange ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr); 10100df0e737SMichael Lange ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 10110df0e737SMichael Lange if (originalCoordinates) { 10128b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 10130df0e737SMichael Lange ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 10140df0e737SMichael Lange ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 10150df0e737SMichael Lange 10160df0e737SMichael Lange ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 10170df0e737SMichael Lange ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr); 10180df0e737SMichael Lange ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 10190df0e737SMichael Lange ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 10200df0e737SMichael Lange ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 10210df0e737SMichael Lange } 102290b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 102390b157c4SStefano Zampini ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr); 10240df0e737SMichael Lange PetscFunctionReturn(0); 10250df0e737SMichael Lange } 10260df0e737SMichael Lange 1027d995df53SMatthew G. Knepley /* Here we are assuming that process 0 always has everything */ 102824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 10290df0e737SMichael Lange { 1030df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 10310df0e737SMichael Lange MPI_Comm comm; 10327980c9d4SMatthew G. Knepley DMLabel depthLabel; 10330df0e737SMichael Lange PetscMPIInt rank; 10347980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1035df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1036df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 10370df0e737SMichael Lange PetscErrorCode ierr; 10380df0e737SMichael Lange 10390df0e737SMichael Lange PetscFunctionBegin; 10400df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10410c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10420c86c063SLisandro Dalcin 10430df0e737SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10440df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10450df0e737SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 10460df0e737SMichael Lange 1047df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 10487980c9d4SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 10497980c9d4SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 1050d67d17b1SMatthew G. Knepley if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);} 1051df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 1052b2566f29SBarry Smith ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr); 1053df0420ecSMatthew G. Knepley if (sendDepth) { 10547980c9d4SMatthew G. Knepley ierr = DMRemoveLabel(dmParallel, "depth", &depthLabel);CHKERRQ(ierr); 10557980c9d4SMatthew G. Knepley ierr = DMLabelDestroy(&depthLabel);CHKERRQ(ierr); 1056df0420ecSMatthew G. Knepley } 1057d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 1058c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr); 1059d995df53SMatthew G. Knepley numLabels = numLocalLabels; 10600df0e737SMichael Lange ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr); 1061627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 1062bdd2d751SMichael Lange for (l = numLabels-1; l >= 0; --l) { 1063bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 106483e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1065d67d17b1SMatthew G. Knepley const char *name = NULL; 10660df0e737SMichael Lange 1067d67d17b1SMatthew G. Knepley if (hasLabels) { 1068d67d17b1SMatthew G. Knepley ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr); 10690df0e737SMichael Lange /* Skip "depth" because it is recreated */ 1070d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr); 1071d67d17b1SMatthew G. Knepley ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr); 1072d67d17b1SMatthew G. Knepley } 107383e10cb3SLisandro Dalcin ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 107483e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 1075bdd2d751SMichael Lange ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr); 107683e10cb3SLisandro Dalcin if (isDepth) { 10777980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 10787980c9d4SMatthew G. Knepley PetscInt gdepth; 10797980c9d4SMatthew G. Knepley 10807980c9d4SMatthew G. Knepley ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 10817980c9d4SMatthew G. Knepley if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth); 10827980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 10837980c9d4SMatthew G. Knepley PetscBool has; 10847980c9d4SMatthew G. Knepley 10857980c9d4SMatthew G. Knepley ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr); 108683e10cb3SLisandro Dalcin if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);} 10877980c9d4SMatthew G. Knepley } 10887980c9d4SMatthew G. Knepley } 1089c58f1c22SToby Isaac ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr); 109083e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 1091d67d17b1SMatthew G. Knepley if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);} 109283e10cb3SLisandro Dalcin ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr); 1093d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr); 1094d67d17b1SMatthew G. Knepley ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr); 10950df0e737SMichael Lange } 10960df0e737SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10970df0e737SMichael Lange PetscFunctionReturn(0); 10980df0e737SMichael Lange } 10990df0e737SMichael Lange 110024cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel) 11019734c634SMichael Lange { 11029734c634SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 11039734c634SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1104f0e73a3dSToby Isaac PetscBool *isHybrid, *isHybridParallel; 1105f0e73a3dSToby Isaac PetscInt dim, depth, d; 1106f0e73a3dSToby Isaac PetscInt pStart, pEnd, pStartP, pEndP; 11079734c634SMichael Lange PetscErrorCode ierr; 11089734c634SMichael Lange 11099734c634SMichael Lange PetscFunctionBegin; 11109734c634SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11110c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 11129734c634SMichael Lange 11139734c634SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 11149734c634SMichael Lange ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1115f0e73a3dSToby Isaac ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr); 1116f0e73a3dSToby Isaac ierr = DMPlexGetChart(dmParallel,&pStartP,&pEndP);CHKERRQ(ierr); 1117f0e73a3dSToby Isaac ierr = PetscCalloc2(pEnd-pStart,&isHybrid,pEndP-pStartP,&isHybridParallel);CHKERRQ(ierr); 1118f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1119f0e73a3dSToby Isaac PetscInt hybridMax = (depth == 1 && d == 1) ? mesh->hybridPointMax[dim] : mesh->hybridPointMax[d]; 11209734c634SMichael Lange 1121f0e73a3dSToby Isaac if (hybridMax >= 0) { 1122f0e73a3dSToby Isaac PetscInt sStart, sEnd, p; 11239734c634SMichael Lange 1124f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dm,d,&sStart,&sEnd);CHKERRQ(ierr); 1125f0e73a3dSToby Isaac for (p = hybridMax; p < sEnd; p++) isHybrid[p-pStart] = PETSC_TRUE; 11269734c634SMichael Lange } 11279734c634SMichael Lange } 1128f0e73a3dSToby Isaac ierr = PetscSFBcastBegin(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1129f0e73a3dSToby Isaac ierr = PetscSFBcastEnd(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1130f0e73a3dSToby Isaac for (d = 0; d <= dim; d++) pmesh->hybridPointMax[d] = -1; 1131f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1132f0e73a3dSToby Isaac PetscInt sStart, sEnd, p, dd; 1133f0e73a3dSToby Isaac 1134f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dmParallel,d,&sStart,&sEnd);CHKERRQ(ierr); 1135f0e73a3dSToby Isaac dd = (depth == 1 && d == 1) ? dim : d; 1136f0e73a3dSToby Isaac for (p = sStart; p < sEnd; p++) { 1137f0e73a3dSToby Isaac if (isHybridParallel[p-pStartP]) { 1138f0e73a3dSToby Isaac pmesh->hybridPointMax[dd] = p; 1139f0e73a3dSToby Isaac break; 1140f0e73a3dSToby Isaac } 1141f0e73a3dSToby Isaac } 1142f0e73a3dSToby Isaac } 1143f0e73a3dSToby Isaac ierr = PetscFree2(isHybrid,isHybridParallel);CHKERRQ(ierr); 11449734c634SMichael Lange PetscFunctionReturn(0); 11459734c634SMichael Lange } 11460df0e737SMichael Lange 114724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1148a6f36705SMichael Lange { 114915078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 115015078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1151a6f36705SMichael Lange MPI_Comm comm; 1152a6f36705SMichael Lange DM refTree; 1153a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1154a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1155a6f36705SMichael Lange PetscBool flg; 1156a6f36705SMichael Lange PetscErrorCode ierr; 1157a6f36705SMichael Lange 1158a6f36705SMichael Lange PetscFunctionBegin; 1159a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11600c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 1161a6f36705SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1162a6f36705SMichael Lange 1163a6f36705SMichael Lange /* Set up tree */ 1164a6f36705SMichael Lange ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 1165a6f36705SMichael Lange ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr); 1166a6f36705SMichael Lange ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr); 1167a6f36705SMichael Lange if (origParentSection) { 1168a6f36705SMichael Lange PetscInt pStart, pEnd; 116908633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1170a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1171a6f36705SMichael Lange PetscSF parentSF; 1172a6f36705SMichael Lange 1173a6f36705SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 1174a6f36705SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr); 1175a6f36705SMichael Lange ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr); 1176a6f36705SMichael Lange ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr); 1177a6f36705SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr); 11788a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr); 1179a6f36705SMichael Lange ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr); 1180a6f36705SMichael Lange ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr); 118108633170SToby Isaac if (original) { 118208633170SToby Isaac PetscInt numParents; 118308633170SToby Isaac 118408633170SToby Isaac ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr); 118508633170SToby Isaac ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr); 118608633170SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr); 118708633170SToby Isaac } 118808633170SToby Isaac else { 118908633170SToby Isaac globParents = origParents; 119008633170SToby Isaac } 119108633170SToby Isaac ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 119208633170SToby Isaac ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 119308633170SToby Isaac if (original) { 119408633170SToby Isaac ierr = PetscFree(globParents);CHKERRQ(ierr); 119508633170SToby Isaac } 1196a6f36705SMichael Lange ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1197a6f36705SMichael Lange ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1198a6f36705SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr); 119962795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 12004a54e071SToby Isaac { 12014a54e071SToby Isaac PetscInt p; 12024a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 12034a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 12044a54e071SToby Isaac if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 12054a54e071SToby Isaac } 12064a54e071SToby Isaac if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 12074a54e071SToby Isaac } 12084a54e071SToby Isaac #endif 1209c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr); 1210a6f36705SMichael Lange if (flg) { 1211a6f36705SMichael Lange ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr); 1212a6f36705SMichael Lange ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1213a6f36705SMichael Lange ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr); 1214a6f36705SMichael Lange ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1215a6f36705SMichael Lange ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr); 1216a6f36705SMichael Lange } 1217a6f36705SMichael Lange ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr); 1218a6f36705SMichael Lange ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr); 1219a6f36705SMichael Lange ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr); 1220a6f36705SMichael Lange ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr); 1221a6f36705SMichael Lange } 122215078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1223a6f36705SMichael Lange PetscFunctionReturn(0); 1224a6f36705SMichael Lange } 12250df0e737SMichael Lange 122624cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 12274eca1733SMichael Lange { 12289852e123SBarry Smith PetscMPIInt rank, size; 12294eca1733SMichael Lange MPI_Comm comm; 12304eca1733SMichael Lange PetscErrorCode ierr; 12314eca1733SMichael Lange 12324eca1733SMichael Lange PetscFunctionBegin; 12334eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12340c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12354eca1733SMichael Lange 12364eca1733SMichael Lange /* Create point SF for parallel mesh */ 12374eca1733SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12384eca1733SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 12394eca1733SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 12409852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 12414eca1733SMichael Lange { 12424eca1733SMichael Lange const PetscInt *leaves; 12434eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 12444eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 12454eca1733SMichael Lange PetscInt pStart, pEnd; 12464eca1733SMichael Lange 12474eca1733SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 12484eca1733SMichael Lange ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 12494eca1733SMichael Lange ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 12504eca1733SMichael Lange for (p=0; p<numRoots; p++) { 12514eca1733SMichael Lange rowners[p].rank = -1; 12524eca1733SMichael Lange rowners[p].index = -1; 12534eca1733SMichael Lange } 12544eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12554eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12564eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12574eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 12584eca1733SMichael Lange lowners[p].rank = rank; 12594eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 12604eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 12614eca1733SMichael Lange lowners[p].rank = -2; 12624eca1733SMichael Lange lowners[p].index = -2; 12634eca1733SMichael Lange } 12644eca1733SMichael Lange } 12654eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 12664eca1733SMichael Lange rowners[p].rank = -3; 12674eca1733SMichael Lange rowners[p].index = -3; 12684eca1733SMichael Lange } 12694eca1733SMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12704eca1733SMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12714eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12724eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12734eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12744eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 12754eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 12764eca1733SMichael Lange } 12774eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 12784eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 12794eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 12804eca1733SMichael Lange if (lowners[p].rank != rank) { 12814eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 12824eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 12834eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 12844eca1733SMichael Lange ++gp; 12854eca1733SMichael Lange } 12864eca1733SMichael Lange } 12874eca1733SMichael Lange ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 12884eca1733SMichael Lange ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 12894eca1733SMichael Lange ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr); 12904eca1733SMichael Lange } 12911cf84007SMatthew G. Knepley { 12921cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 12931cf84007SMatthew G. Knepley 1294b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1295b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 12961cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 12971cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 12981cf84007SMatthew G. Knepley } 12994eca1733SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 13004eca1733SMichael Lange PetscFunctionReturn(0); 13014eca1733SMichael Lange } 13024eca1733SMichael Lange 130398ba2d7fSLawrence Mitchell /*@ 130498ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 130598ba2d7fSLawrence Mitchell 130698ba2d7fSLawrence Mitchell Input Parameters: 130798ba2d7fSLawrence Mitchell + dm - The DMPlex object 130898ba2d7fSLawrence Mitchell - flg - Balance the partition? 130998ba2d7fSLawrence Mitchell 131098ba2d7fSLawrence Mitchell Level: intermediate 131198ba2d7fSLawrence Mitchell 131298ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance() 131398ba2d7fSLawrence Mitchell @*/ 131498ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 131598ba2d7fSLawrence Mitchell { 131698ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 131798ba2d7fSLawrence Mitchell 131898ba2d7fSLawrence Mitchell PetscFunctionBegin; 131998ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 132098ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 132198ba2d7fSLawrence Mitchell } 132298ba2d7fSLawrence Mitchell 132398ba2d7fSLawrence Mitchell /*@ 132498ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 132598ba2d7fSLawrence Mitchell 132698ba2d7fSLawrence Mitchell Input Parameter: 132798ba2d7fSLawrence Mitchell + dm - The DMPlex object 132898ba2d7fSLawrence Mitchell 132998ba2d7fSLawrence Mitchell Output Parameter: 133098ba2d7fSLawrence Mitchell + flg - Balance the partition? 133198ba2d7fSLawrence Mitchell 133298ba2d7fSLawrence Mitchell Level: intermediate 133398ba2d7fSLawrence Mitchell 133498ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance() 133598ba2d7fSLawrence Mitchell @*/ 133698ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 133798ba2d7fSLawrence Mitchell { 133898ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 133998ba2d7fSLawrence Mitchell 134098ba2d7fSLawrence Mitchell PetscFunctionBegin; 134198ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 134298ba2d7fSLawrence Mitchell PetscValidIntPointer(flg, 2); 134398ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 134498ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 134598ba2d7fSLawrence Mitchell } 134698ba2d7fSLawrence Mitchell 1347f5bf2dbfSMichael Lange /*@C 1348f5bf2dbfSMichael Lange DMPlexDerivePointSF - Build a point SF from an SF describing a point migration 1349f5bf2dbfSMichael Lange 1350f5bf2dbfSMichael Lange Input Parameter: 1351f5bf2dbfSMichael Lange + dm - The source DMPlex object 1352f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 13531627f6ccSMichael Lange . ownership - Flag causing a vote to determine point ownership 1354f5bf2dbfSMichael Lange 1355f5bf2dbfSMichael Lange Output Parameter: 1356f5bf2dbfSMichael Lange - pointSF - The star forest describing the point overlap in the remapped DM 1357f5bf2dbfSMichael Lange 1358f5bf2dbfSMichael Lange Level: developer 1359f5bf2dbfSMichael Lange 1360f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 1361f5bf2dbfSMichael Lange @*/ 1362f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1363f5bf2dbfSMichael Lange { 136423193802SMatthew G. Knepley PetscMPIInt rank, size; 13651627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1366f5bf2dbfSMichael Lange PetscInt *pointLocal; 1367f5bf2dbfSMichael Lange const PetscInt *leaves; 1368f5bf2dbfSMichael Lange const PetscSFNode *roots; 1369f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 137023193802SMatthew G. Knepley Vec shifts; 1371cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 137223193802SMatthew G. Knepley const PetscScalar *shift = NULL; 137323193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 137498ba2d7fSLawrence Mitchell PetscBool balance; 1375f5bf2dbfSMichael Lange PetscErrorCode ierr; 1376f5bf2dbfSMichael Lange 1377f5bf2dbfSMichael Lange PetscFunctionBegin; 1378f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1379f5bf2dbfSMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 1380ab0bc224SMatthew G. Knepley ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 1381f5bf2dbfSMichael Lange 138298ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 1383f5bf2dbfSMichael Lange ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr); 1384f5bf2dbfSMichael Lange ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr); 1385f5bf2dbfSMichael Lange if (ownership) { 138623193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 138798ba2d7fSLawrence Mitchell if (balance) { 138823193802SMatthew G. Knepley PetscRandom r; 138923193802SMatthew G. Knepley 139023193802SMatthew G. Knepley ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr); 1391cae3e4f3SLawrence Mitchell ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr); 139223193802SMatthew G. Knepley ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr); 139323193802SMatthew G. Knepley ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr); 139423193802SMatthew G. Knepley ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr); 139523193802SMatthew G. Knepley ierr = VecSetRandom(shifts, r);CHKERRQ(ierr); 139623193802SMatthew G. Knepley ierr = PetscRandomDestroy(&r);CHKERRQ(ierr); 139723193802SMatthew G. Knepley ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr); 139823193802SMatthew G. Knepley } 139923193802SMatthew G. Knepley 140023193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1401f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 140223193802SMatthew G. Knepley if (shiftDebug) { 1403e7bcd635SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr); 140423193802SMatthew G. Knepley } 1405f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1406e7bcd635SMatthew G. Knepley leafNodes[p].rank = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 140743f7d02bSMichael Lange leafNodes[p].index = p; 1408f5bf2dbfSMichael Lange } 1409f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 14101627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1411f5bf2dbfSMichael Lange rootNodes[p].rank = -3; 1412f5bf2dbfSMichael Lange rootNodes[p].index = -3; 1413f5bf2dbfSMichael Lange } 1414f5bf2dbfSMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 1415f5bf2dbfSMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 141698ba2d7fSLawrence Mitchell if (balance) { 1417c091126eSLawrence Mitchell /* We've voted, now we need to get the rank. When we're balancing the partition, the "rank" in rootNotes is not 1418c091126eSLawrence Mitchell * the rank but rather (rank + random)%size. So we do another reduction, voting the same way, but sending the 1419c091126eSLawrence Mitchell * rank instead of the index. */ 1420c091126eSLawrence Mitchell PetscSFNode *rootRanks = NULL; 1421c091126eSLawrence Mitchell ierr = PetscMalloc1(nroots, &rootRanks);CHKERRQ(ierr); 1422c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1423c091126eSLawrence Mitchell rootRanks[p].rank = -3; 1424c091126eSLawrence Mitchell rootRanks[p].index = -3; 1425c091126eSLawrence Mitchell } 1426c091126eSLawrence Mitchell for (p = 0; p < nleaves; p++) leafNodes[p].index = rank; 1427c091126eSLawrence Mitchell ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr); 1428c091126eSLawrence Mitchell ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr); 1429c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) rootNodes[p].rank = rootRanks[p].index; 1430c091126eSLawrence Mitchell ierr = PetscFree(rootRanks);CHKERRQ(ierr); 1431c091126eSLawrence Mitchell } 1432f5bf2dbfSMichael Lange } else { 1433f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1434f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1435f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1436f5bf2dbfSMichael Lange }; 1437f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1438f5bf2dbfSMichael Lange /* Write new local id into old location */ 1439f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 14406462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1441f5bf2dbfSMichael Lange } 1442f5bf2dbfSMichael Lange } 1443f5bf2dbfSMichael Lange } 1444f5bf2dbfSMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1445f5bf2dbfSMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1446f5bf2dbfSMichael Lange 144723193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1448b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 144923193802SMatthew G. Knepley } 14501627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr); 14511627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr); 1452f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1453b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 1454f5bf2dbfSMichael Lange pointLocal[idx] = p; 1455f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1456f5bf2dbfSMichael Lange idx++; 1457f5bf2dbfSMichael Lange } 1458f5bf2dbfSMichael Lange } 145923193802SMatthew G. Knepley if (shift) { 146023193802SMatthew G. Knepley ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr); 146123193802SMatthew G. Knepley ierr = VecDestroy(&shifts);CHKERRQ(ierr); 146223193802SMatthew G. Knepley } 146323193802SMatthew G. Knepley if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);} 1464f5bf2dbfSMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr); 14651627f6ccSMichael Lange ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr); 1466f5bf2dbfSMichael Lange ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 1467f5bf2dbfSMichael Lange ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr); 1468f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1469f5bf2dbfSMichael Lange } 1470f5bf2dbfSMichael Lange 147115078cd4SMichael Lange /*@C 147215078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 147315078cd4SMichael Lange 147483655b49SVáclav Hapla Collective on DM and PetscSF 147583655b49SVáclav Hapla 147615078cd4SMichael Lange Input Parameter: 147715078cd4SMichael Lange + dm - The source DMPlex object 14781627f6ccSMichael Lange . sf - The star forest communication context describing the migration pattern 147915078cd4SMichael Lange 148015078cd4SMichael Lange Output Parameter: 148115078cd4SMichael Lange - targetDM - The target DMPlex object 148215078cd4SMichael Lange 1483b9f40539SMichael Lange Level: intermediate 148415078cd4SMichael Lange 148515078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 148615078cd4SMichael Lange @*/ 1487b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 148815078cd4SMichael Lange { 1489b9f40539SMichael Lange MPI_Comm comm; 1490cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1491b9f40539SMichael Lange PetscSF sfPoint; 149215078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1493ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1494b9f40539SMichael Lange PetscBool flg; 149515078cd4SMichael Lange PetscErrorCode ierr; 149615078cd4SMichael Lange 149715078cd4SMichael Lange PetscFunctionBegin; 149815078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14991b858b30SMichael Lange ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 1500b9f40539SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 150115078cd4SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 150215078cd4SMichael Lange ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr); 1503cc1750acSStefano Zampini ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 1504cc1750acSStefano Zampini ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr); 150515078cd4SMichael Lange 1506bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 1507b9f40539SMichael Lange ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 1508b9f40539SMichael Lange ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 1509bfb0467fSMichael Lange if (nroots >= 0) { 1510b9f40539SMichael Lange IS isOriginal; 1511ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1512ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1513367003a6SStefano Zampini 1514b9f40539SMichael Lange /* Get the original point numbering */ 1515b9f40539SMichael Lange ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr); 1516b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal);CHKERRQ(ierr); 1517b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr); 1518b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1519b9f40539SMichael Lange /* Convert to positive global numbers */ 1520b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1521b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 1522b9f40539SMichael Lange ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 1523b9f40539SMichael Lange ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr); 1524b9f40539SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr); 1525b9f40539SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr); 1526b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, (const PetscInt*) numbering_new, PETSC_OWN_POINTER, <ogMigration);CHKERRQ(ierr); 1527b9f40539SMichael Lange ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1528b9f40539SMichael Lange ierr = ISDestroy(&isOriginal);CHKERRQ(ierr); 152915078cd4SMichael Lange } else { 1530bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 153115078cd4SMichael Lange ierr = ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration);CHKERRQ(ierr); 153215078cd4SMichael Lange } 1533c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 1534b9f40539SMichael Lange if (flg) { 1535b9f40539SMichael Lange ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr); 1536b9f40539SMichael Lange ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr); 1537b9f40539SMichael Lange } 153815078cd4SMichael Lange /* Migrate DM data to target DM */ 1539ac04eaf7SToby Isaac ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 154015078cd4SMichael Lange ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr); 15410dc1530dSSander Arens ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr); 154215078cd4SMichael Lange ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr); 154308633170SToby Isaac ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 1544ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingDestroy(<ogOriginal);CHKERRQ(ierr); 1545302440fdSBarry Smith ierr = ISLocalToGlobalMappingDestroy(<ogMigration);CHKERRQ(ierr); 15461b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 154715078cd4SMichael Lange PetscFunctionReturn(0); 154815078cd4SMichael Lange } 154915078cd4SMichael Lange 1550825f8a23SLisandro Dalcin PETSC_INTERN PetscErrorCode DMPlexPartitionLabelClosure_Private(DM,DMLabel,PetscInt,PetscInt,const PetscInt[],IS*); 1551825f8a23SLisandro Dalcin 15523b8f15a2SMatthew G. Knepley /*@C 155370034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 155470034214SMatthew G. Knepley 155583655b49SVáclav Hapla Collective on DM 155670034214SMatthew G. Knepley 155770034214SMatthew G. Knepley Input Parameter: 155870034214SMatthew G. Knepley + dm - The original DMPlex object 155970034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 156070034214SMatthew G. Knepley 156170034214SMatthew G. Knepley Output Parameter: 1562f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1563f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 156470034214SMatthew G. Knepley 1565f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 156670034214SMatthew G. Knepley 1567b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 156870034214SMatthew G. Knepley representation on the mesh. 156970034214SMatthew G. Knepley 157070034214SMatthew G. Knepley Level: intermediate 157170034214SMatthew G. Knepley 157270034214SMatthew G. Knepley .keywords: mesh, elements 1573b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency() 157470034214SMatthew G. Knepley @*/ 157580cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 157670034214SMatthew G. Knepley { 157770034214SMatthew G. Knepley MPI_Comm comm; 157815078cd4SMichael Lange PetscPartitioner partitioner; 1579f8987ae8SMichael Lange IS cellPart; 1580f8987ae8SMichael Lange PetscSection cellPartSection; 1581cf86098cSMatthew G. Knepley DM dmCoord; 1582f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1583*874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 158498ba2d7fSLawrence Mitchell PetscBool flg, balance; 1585*874ddda9SLisandro Dalcin PetscMPIInt rank, size; 158670034214SMatthew G. Knepley PetscErrorCode ierr; 158770034214SMatthew G. Knepley 158870034214SMatthew G. Knepley PetscFunctionBegin; 158970034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1590d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1591d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1592d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 159370034214SMatthew G. Knepley 15940c86c063SLisandro Dalcin if (sf) *sf = NULL; 15950c86c063SLisandro Dalcin *dmParallel = NULL; 159670034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 159770034214SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 15989852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 15990c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 160070034214SMatthew G. Knepley 16010c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 160215078cd4SMichael Lange /* Create cell partition */ 160367eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 160477623264SMatthew G. Knepley ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr); 160515078cd4SMichael Lange ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr); 160615078cd4SMichael Lange ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr); 1607f8987ae8SMichael Lange { 1608f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1609825f8a23SLisandro Dalcin IS is; 1610825f8a23SLisandro Dalcin PetscHSetI ht; 1611825f8a23SLisandro Dalcin PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks, *iranks; 1612f8987ae8SMichael Lange const PetscInt *points; 1613825f8a23SLisandro Dalcin 1614d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr); 1615825f8a23SLisandro Dalcin /* Preallocate strata */ 1616825f8a23SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 1617825f8a23SLisandro Dalcin ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1618825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 1619825f8a23SLisandro Dalcin ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1620825f8a23SLisandro Dalcin if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);} 1621825f8a23SLisandro Dalcin } 1622825f8a23SLisandro Dalcin ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr); 1623825f8a23SLisandro Dalcin ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr); 1624825f8a23SLisandro Dalcin ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr); 1625825f8a23SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 1626825f8a23SLisandro Dalcin ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr); 1627825f8a23SLisandro Dalcin ierr = PetscFree(iranks);CHKERRQ(ierr); 1628825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 1629f8987ae8SMichael Lange ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr); 1630f8987ae8SMichael Lange ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1631f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 1632f8987ae8SMichael Lange ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1633825f8a23SLisandro Dalcin if (!npoints) continue; 1634825f8a23SLisandro Dalcin ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr); 1635825f8a23SLisandro Dalcin ierr = DMPlexPartitionLabelClosure_Private(dm, lblPartition, proc, npoints, points+poff, &is);CHKERRQ(ierr); 1636825f8a23SLisandro Dalcin ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr); 1637825f8a23SLisandro Dalcin ierr = ISDestroy(&is);CHKERRQ(ierr); 1638f8987ae8SMichael Lange } 1639f8987ae8SMichael Lange ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr); 1640f8987ae8SMichael Lange } 1641d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr); 1642*874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr); 1643302440fdSBarry Smith ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr); 164443f7d02bSMichael Lange /* Stratify the SF in case we are migrating an already parallel plex */ 164543f7d02bSMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr); 164643f7d02bSMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 164743f7d02bSMichael Lange sfMigration = sfStratified; 164867eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1649c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 165070034214SMatthew G. Knepley if (flg) { 1651f8987ae8SMichael Lange ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1652f8987ae8SMichael Lange ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 165370034214SMatthew G. Knepley } 1654f8987ae8SMichael Lange 165515078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 165670034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 165770034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 1658b9f40539SMichael Lange ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr); 165970034214SMatthew G. Knepley 1660a157612eSMichael Lange /* Build the point SF without overlap */ 166198ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 166298ba2d7fSLawrence Mitchell ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr); 16631627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr); 1664f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr); 1665cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr); 1666cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1667f5bf2dbfSMichael Lange if (flg) {ierr = PetscSFView(sfPoint, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);} 166870034214SMatthew G. Knepley 1669a157612eSMichael Lange if (overlap > 0) { 167015078cd4SMichael Lange DM dmOverlap; 167115078cd4SMichael Lange PetscInt nroots, nleaves; 167215078cd4SMichael Lange PetscSFNode *newRemote; 167315078cd4SMichael Lange const PetscSFNode *oldRemote; 167415078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1675a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 1676b9f40539SMichael Lange ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr); 1677a157612eSMichael Lange ierr = DMDestroy(dmParallel);CHKERRQ(ierr); 1678a157612eSMichael Lange *dmParallel = dmOverlap; 1679c389ea9fSToby Isaac if (flg) { 16803d822a50SMichael Lange ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr); 168115078cd4SMichael Lange ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr); 1682c389ea9fSToby Isaac } 168343331d4aSMichael Lange 1684f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 1685f8987ae8SMichael Lange ierr = PetscSFGetGraph(sfMigration, &nroots, NULL, NULL, &oldRemote);CHKERRQ(ierr); 168615078cd4SMichael Lange ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 168743331d4aSMichael Lange ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr); 168815078cd4SMichael Lange ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 168915078cd4SMichael Lange ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 169015078cd4SMichael Lange ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr); 169115078cd4SMichael Lange ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 169215078cd4SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1693f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 169415078cd4SMichael Lange sfMigration = sfOverlapPoint; 1695c389ea9fSToby Isaac } 1696bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 1697f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr); 1698f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr); 16994eca1733SMichael Lange ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 17004eca1733SMichael Lange ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 1701721cbd76SMatthew G. Knepley /* Copy BC */ 1702a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); 170366fe0bfeSMatthew G. Knepley /* Create sfNatural */ 170466fe0bfeSMatthew G. Knepley if (dm->useNatural) { 170566fe0bfeSMatthew G. Knepley PetscSection section; 170666fe0bfeSMatthew G. Knepley 1707e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 17080c1f158bSMatthew G. Knepley ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr); 17090e663481SBlaise Bourdin ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr); 171066fe0bfeSMatthew G. Knepley } 1711721cbd76SMatthew G. Knepley /* Cleanup */ 1712f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 1713f8987ae8SMichael Lange else {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);} 1714f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 171570034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 171670034214SMatthew G. Knepley PetscFunctionReturn(0); 171770034214SMatthew G. Knepley } 1718a157612eSMichael Lange 1719a157612eSMichael Lange /*@C 172024cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1721a157612eSMichael Lange 172283655b49SVáclav Hapla Collective on DM 1723a157612eSMichael Lange 1724a157612eSMichael Lange Input Parameter: 1725a157612eSMichael Lange + dm - The non-overlapping distrbuted DMPlex object 17260c86c063SLisandro Dalcin - overlap - The overlap of partitions 1727a157612eSMichael Lange 1728a157612eSMichael Lange Output Parameter: 1729a157612eSMichael Lange + sf - The PetscSF used for point distribution 1730a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1731a157612eSMichael Lange 1732a157612eSMichael Lange Note: If the mesh was not distributed, the return value is NULL. 1733a157612eSMichael Lange 1734b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1735a157612eSMichael Lange representation on the mesh. 1736a157612eSMichael Lange 1737a157612eSMichael Lange Level: intermediate 1738a157612eSMichael Lange 1739a157612eSMichael Lange .keywords: mesh, elements 1740b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency() 1741a157612eSMichael Lange @*/ 1742b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1743a157612eSMichael Lange { 1744a157612eSMichael Lange MPI_Comm comm; 17453567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1746a157612eSMichael Lange PetscSection rootSection, leafSection; 1747a157612eSMichael Lange IS rootrank, leafrank; 1748cf86098cSMatthew G. Knepley DM dmCoord; 1749a9f1d5b2SMichael Lange DMLabel lblOverlap; 1750f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1751a157612eSMichael Lange PetscErrorCode ierr; 1752a157612eSMichael Lange 1753a157612eSMichael Lange PetscFunctionBegin; 1754a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1755a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1756a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1757a157612eSMichael Lange 17580c86c063SLisandro Dalcin if (sf) *sf = NULL; 17590c86c063SLisandro Dalcin *dmOverlap = NULL; 1760a157612eSMichael Lange ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 17613567eaeeSMatthew G. Knepley ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1762a157612eSMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 17630c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1764a157612eSMichael Lange 17650c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1766a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 176767eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1768a157612eSMichael Lange ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr); 1769a157612eSMichael Lange ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr); 1770a157612eSMichael Lange ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr); 1771a9f1d5b2SMichael Lange ierr = DMPlexCreateOverlap(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr); 1772a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 1773a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr); 1774a9f1d5b2SMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr); 1775a9f1d5b2SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1776a9f1d5b2SMichael Lange sfOverlap = sfStratified; 1777a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr); 1778a9f1d5b2SMichael Lange ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr); 1779a9f1d5b2SMichael Lange 178015fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr); 178115fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr); 178215fff7beSMatthew G. Knepley ierr = ISDestroy(&rootrank);CHKERRQ(ierr); 178315fff7beSMatthew G. Knepley ierr = ISDestroy(&leafrank);CHKERRQ(ierr); 178467eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1785a157612eSMichael Lange 1786a157612eSMichael Lange /* Build the overlapping DM */ 1787a157612eSMichael Lange ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr); 1788a157612eSMichael Lange ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr); 1789a9f1d5b2SMichael Lange ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr); 1790f5bf2dbfSMichael Lange /* Build the new point SF */ 17911627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 1792f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr); 1793cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr); 1794cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1795f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1796a157612eSMichael Lange /* Cleanup overlap partition */ 1797a9f1d5b2SMichael Lange ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr); 1798a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 1799a9f1d5b2SMichael Lange else {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);} 18001b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1801a157612eSMichael Lange PetscFunctionReturn(0); 1802a157612eSMichael Lange } 18036462276dSToby Isaac 18046462276dSToby Isaac /*@C 18056462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 18066462276dSToby Isaac root process of the original's communicator. 18076462276dSToby Isaac 180883655b49SVáclav Hapla Collective on DM 180983655b49SVáclav Hapla 18106462276dSToby Isaac Input Parameters: 18116462276dSToby Isaac . dm - the original DMPlex object 18126462276dSToby Isaac 18136462276dSToby Isaac Output Parameters: 1814a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1815a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 18166462276dSToby Isaac 18176462276dSToby Isaac Level: intermediate 18186462276dSToby Isaac 18196462276dSToby Isaac .keywords: mesh 18206462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM() 18216462276dSToby Isaac @*/ 1822a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 18236462276dSToby Isaac { 18246462276dSToby Isaac MPI_Comm comm; 18256462276dSToby Isaac PetscMPIInt size; 18266462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 18276462276dSToby Isaac PetscErrorCode ierr; 18286462276dSToby Isaac 18296462276dSToby Isaac PetscFunctionBegin; 18306462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18310c86c063SLisandro Dalcin PetscValidPointer(gatherMesh,2); 18320c86c063SLisandro Dalcin *gatherMesh = NULL; 1833a13df41bSStefano Zampini if (sf) *sf = NULL; 18346462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 18356462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 18366462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 18376462276dSToby Isaac ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr); 18386462276dSToby Isaac ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr); 18396462276dSToby Isaac ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr); 18406462276dSToby Isaac ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr); 18416462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr); 1842a13df41bSStefano Zampini ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr); 1843a13df41bSStefano Zampini 18446462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr); 18456462276dSToby Isaac ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr); 18466462276dSToby Isaac ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr); 18476462276dSToby Isaac PetscFunctionReturn(0); 18486462276dSToby Isaac } 18496462276dSToby Isaac 18506462276dSToby Isaac /*@C 18516462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 18526462276dSToby Isaac 185383655b49SVáclav Hapla Collective on DM 185483655b49SVáclav Hapla 18556462276dSToby Isaac Input Parameters: 18566462276dSToby Isaac . dm - the original DMPlex object 18576462276dSToby Isaac 18586462276dSToby Isaac Output Parameters: 1859a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1860a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 18616462276dSToby Isaac 18626462276dSToby Isaac Level: intermediate 18636462276dSToby Isaac 18646462276dSToby Isaac .keywords: mesh 18656462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM() 18666462276dSToby Isaac @*/ 1867a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 18686462276dSToby Isaac { 18696462276dSToby Isaac MPI_Comm comm; 18706462276dSToby Isaac PetscMPIInt size, rank; 18716462276dSToby Isaac PetscInt pStart, pEnd, p; 18726462276dSToby Isaac PetscInt numPoints = -1; 1873a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 18746462276dSToby Isaac DM gatherDM, dmCoord; 18756462276dSToby Isaac PetscSFNode *points; 18766462276dSToby Isaac PetscErrorCode ierr; 18776462276dSToby Isaac 18786462276dSToby Isaac PetscFunctionBegin; 18796462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18800c86c063SLisandro Dalcin PetscValidPointer(redundantMesh,2); 18810c86c063SLisandro Dalcin *redundantMesh = NULL; 18826462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 18836462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 188468dbc166SMatthew G. Knepley if (size == 1) { 188568dbc166SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 188668dbc166SMatthew G. Knepley *redundantMesh = dm; 1887a13df41bSStefano Zampini if (sf) *sf = NULL; 188868dbc166SMatthew G. Knepley PetscFunctionReturn(0); 188968dbc166SMatthew G. Knepley } 1890a13df41bSStefano Zampini ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr); 18916462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 18926462276dSToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 18936462276dSToby Isaac ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr); 18946462276dSToby Isaac numPoints = pEnd - pStart; 18956462276dSToby Isaac ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr); 18966462276dSToby Isaac ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr); 18976462276dSToby Isaac ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr); 18986462276dSToby Isaac for (p = 0; p < numPoints; p++) { 18996462276dSToby Isaac points[p].index = p; 19006462276dSToby Isaac points[p].rank = 0; 19016462276dSToby Isaac } 19026462276dSToby Isaac ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr); 19036462276dSToby Isaac ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr); 19046462276dSToby Isaac ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr); 19056462276dSToby Isaac ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr); 19066462276dSToby Isaac ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 19076462276dSToby Isaac ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr); 19086462276dSToby Isaac ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr); 19096462276dSToby Isaac if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 19106462276dSToby Isaac ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1911a13df41bSStefano Zampini if (sf) { 1912a13df41bSStefano Zampini PetscSF tsf; 1913a13df41bSStefano Zampini 1914a13df41bSStefano Zampini ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr); 1915a13df41bSStefano Zampini ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr); 1916a13df41bSStefano Zampini ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr); 1917a13df41bSStefano Zampini } 19186462276dSToby Isaac ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr); 1919a13df41bSStefano Zampini ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr); 19206462276dSToby Isaac ierr = DMDestroy(&gatherDM);CHKERRQ(ierr); 19216462276dSToby Isaac PetscFunctionReturn(0); 19226462276dSToby Isaac } 1923