170034214SMatthew G. Knepley #include <petsc-private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 270034214SMatthew G. Knepley #include <petscsf.h> 370034214SMatthew G. Knepley 470034214SMatthew G. Knepley #undef __FUNCT__ 570034214SMatthew G. Knepley #define __FUNCT__ "DMPlexSetAdjacencyUseCone" 670034214SMatthew G. Knepley /*@ 770034214SMatthew G. Knepley DMPlexSetAdjacencyUseCone - Define adjacency in the mesh using either the cone or the support first 870034214SMatthew G. Knepley 970034214SMatthew G. Knepley Input Parameters: 1070034214SMatthew G. Knepley + dm - The DM object 1170034214SMatthew G. Knepley - useCone - Flag to use the cone first 1270034214SMatthew G. Knepley 1370034214SMatthew G. Knepley Level: intermediate 1470034214SMatthew G. Knepley 1570034214SMatthew G. Knepley Notes: 1670034214SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 1770034214SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in star(cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 1870034214SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 1970034214SMatthew G. Knepley 2070034214SMatthew G. Knepley .seealso: DMPlexGetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexGetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator() 2170034214SMatthew G. Knepley @*/ 2270034214SMatthew G. Knepley PetscErrorCode DMPlexSetAdjacencyUseCone(DM dm, PetscBool useCone) 2370034214SMatthew G. Knepley { 2470034214SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 2570034214SMatthew G. Knepley 2670034214SMatthew G. Knepley PetscFunctionBegin; 2770034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2870034214SMatthew G. Knepley mesh->useCone = useCone; 2970034214SMatthew G. Knepley PetscFunctionReturn(0); 3070034214SMatthew G. Knepley } 3170034214SMatthew G. Knepley 3270034214SMatthew G. Knepley #undef __FUNCT__ 3370034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacencyUseCone" 3470034214SMatthew G. Knepley /*@ 3570034214SMatthew G. Knepley DMPlexGetAdjacencyUseCone - Query whether adjacency in the mesh uses the cone or the support first 3670034214SMatthew G. Knepley 3770034214SMatthew G. Knepley Input Parameter: 3870034214SMatthew G. Knepley . dm - The DM object 3970034214SMatthew G. Knepley 4070034214SMatthew G. Knepley Output Parameter: 4170034214SMatthew G. Knepley . useCone - Flag to use the cone first 4270034214SMatthew G. Knepley 4370034214SMatthew G. Knepley Level: intermediate 4470034214SMatthew G. Knepley 4570034214SMatthew G. Knepley Notes: 4670034214SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 4770034214SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in star(cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 4870034214SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 4970034214SMatthew G. Knepley 5070034214SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexGetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator() 5170034214SMatthew G. Knepley @*/ 5270034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacencyUseCone(DM dm, PetscBool *useCone) 5370034214SMatthew G. Knepley { 5470034214SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 5570034214SMatthew G. Knepley 5670034214SMatthew G. Knepley PetscFunctionBegin; 5770034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5870034214SMatthew G. Knepley PetscValidIntPointer(useCone, 2); 5970034214SMatthew G. Knepley *useCone = mesh->useCone; 6070034214SMatthew G. Knepley PetscFunctionReturn(0); 6170034214SMatthew G. Knepley } 6270034214SMatthew G. Knepley 6370034214SMatthew G. Knepley #undef __FUNCT__ 6470034214SMatthew G. Knepley #define __FUNCT__ "DMPlexSetAdjacencyUseClosure" 6570034214SMatthew G. Knepley /*@ 6670034214SMatthew G. Knepley DMPlexSetAdjacencyUseClosure - Define adjacency in the mesh using the transitive closure 6770034214SMatthew G. Knepley 6870034214SMatthew G. Knepley Input Parameters: 6970034214SMatthew G. Knepley + dm - The DM object 7070034214SMatthew G. Knepley - useClosure - Flag to use the closure 7170034214SMatthew G. Knepley 7270034214SMatthew G. Knepley Level: intermediate 7370034214SMatthew G. Knepley 7470034214SMatthew G. Knepley Notes: 7570034214SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 7670034214SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in star(cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 7770034214SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 7870034214SMatthew G. Knepley 7970034214SMatthew G. Knepley .seealso: DMPlexGetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator() 8070034214SMatthew G. Knepley @*/ 8170034214SMatthew G. Knepley PetscErrorCode DMPlexSetAdjacencyUseClosure(DM dm, PetscBool useClosure) 8270034214SMatthew G. Knepley { 8370034214SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 8470034214SMatthew G. Knepley 8570034214SMatthew G. Knepley PetscFunctionBegin; 8670034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8770034214SMatthew G. Knepley mesh->useClosure = useClosure; 8870034214SMatthew G. Knepley PetscFunctionReturn(0); 8970034214SMatthew G. Knepley } 9070034214SMatthew G. Knepley 9170034214SMatthew G. Knepley #undef __FUNCT__ 9270034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacencyUseClosure" 9370034214SMatthew G. Knepley /*@ 9470034214SMatthew G. Knepley DMPlexGetAdjacencyUseClosure - Query whether adjacency in the mesh uses the transitive closure 9570034214SMatthew G. Knepley 9670034214SMatthew G. Knepley Input Parameter: 9770034214SMatthew G. Knepley . dm - The DM object 9870034214SMatthew G. Knepley 9970034214SMatthew G. Knepley Output Parameter: 10070034214SMatthew G. Knepley . useClosure - Flag to use the closure 10170034214SMatthew G. Knepley 10270034214SMatthew G. Knepley Level: intermediate 10370034214SMatthew G. Knepley 10470034214SMatthew G. Knepley Notes: 10570034214SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 10670034214SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in star(cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 10770034214SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 10870034214SMatthew G. Knepley 10970034214SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator() 11070034214SMatthew G. Knepley @*/ 11170034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacencyUseClosure(DM dm, PetscBool *useClosure) 11270034214SMatthew G. Knepley { 11370034214SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 11470034214SMatthew G. Knepley 11570034214SMatthew G. Knepley PetscFunctionBegin; 11670034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11770034214SMatthew G. Knepley PetscValidIntPointer(useClosure, 2); 11870034214SMatthew G. Knepley *useClosure = mesh->useClosure; 11970034214SMatthew G. Knepley PetscFunctionReturn(0); 12070034214SMatthew G. Knepley } 12170034214SMatthew G. Knepley 12270034214SMatthew G. Knepley #undef __FUNCT__ 123*8b0b4c70SToby Isaac #define __FUNCT__ "DMPlexSetAdjacencyUseConstraints" 124*8b0b4c70SToby Isaac /*@ 125*8b0b4c70SToby Isaac DMPlexSetAdjacencyUseConstraints - Define adjacency in the mesh using the point-to-point constraints. 126*8b0b4c70SToby Isaac 127*8b0b4c70SToby Isaac Input Parameters: 128*8b0b4c70SToby Isaac + dm - The DM object 129*8b0b4c70SToby Isaac - useConstraints - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 130*8b0b4c70SToby Isaac 131*8b0b4c70SToby Isaac Level: intermediate 132*8b0b4c70SToby Isaac 133*8b0b4c70SToby Isaac .seealso: DMPlexGetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetConstraints() 134*8b0b4c70SToby Isaac @*/ 135*8b0b4c70SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseConstraints(DM dm, PetscBool useConstraints) 136*8b0b4c70SToby Isaac { 137*8b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 138*8b0b4c70SToby Isaac 139*8b0b4c70SToby Isaac PetscFunctionBegin; 140*8b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 141*8b0b4c70SToby Isaac mesh->useConstraints = useConstraints; 142*8b0b4c70SToby Isaac PetscFunctionReturn(0); 143*8b0b4c70SToby Isaac } 144*8b0b4c70SToby Isaac 145*8b0b4c70SToby Isaac #undef __FUNCT__ 146*8b0b4c70SToby Isaac #define __FUNCT__ "DMPlexGetAdjacencyUseConstraints" 147*8b0b4c70SToby Isaac /*@ 148*8b0b4c70SToby Isaac DMPlexGetAdjacencyUseConstraints - Query whether adjacency in the mesh uses the point-to-point constraints. 149*8b0b4c70SToby Isaac 150*8b0b4c70SToby Isaac Input Parameter: 151*8b0b4c70SToby Isaac . dm - The DM object 152*8b0b4c70SToby Isaac 153*8b0b4c70SToby Isaac Output Parameter: 154*8b0b4c70SToby Isaac . useConstraints - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 155*8b0b4c70SToby Isaac 156*8b0b4c70SToby Isaac Level: intermediate 157*8b0b4c70SToby Isaac 158*8b0b4c70SToby Isaac .seealso: DMPlexSetAdjacencyUseConstraints(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetConstraints() 159*8b0b4c70SToby Isaac @*/ 160*8b0b4c70SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseConstraints(DM dm, PetscBool *useConstraints) 161*8b0b4c70SToby Isaac { 162*8b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 163*8b0b4c70SToby Isaac 164*8b0b4c70SToby Isaac PetscFunctionBegin; 165*8b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 166*8b0b4c70SToby Isaac PetscValidIntPointer(useConstraints, 2); 167*8b0b4c70SToby Isaac *useConstraints = mesh->useConstraints; 168*8b0b4c70SToby Isaac PetscFunctionReturn(0); 169*8b0b4c70SToby Isaac } 170*8b0b4c70SToby Isaac 171*8b0b4c70SToby Isaac #undef __FUNCT__ 17270034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency_Cone_Internal" 17370034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 17470034214SMatthew G. Knepley { 17570034214SMatthew G. Knepley const PetscInt *cone = NULL; 17670034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 17770034214SMatthew G. Knepley PetscErrorCode ierr; 17870034214SMatthew G. Knepley 17970034214SMatthew G. Knepley PetscFunctionBeginHot; 18070034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 18170034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 18270034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 18370034214SMatthew G. Knepley const PetscInt *support = NULL; 18470034214SMatthew G. Knepley PetscInt supportSize, s, q; 18570034214SMatthew G. Knepley 18670034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, cone[c], &supportSize);CHKERRQ(ierr); 18770034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, cone[c], &support);CHKERRQ(ierr); 18870034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 18970034214SMatthew G. Knepley for (q = 0; q < numAdj || (adj[numAdj++] = support[s],0); ++q) { 19070034214SMatthew G. Knepley if (support[s] == adj[q]) break; 19170034214SMatthew G. Knepley } 19270034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 19370034214SMatthew G. Knepley } 19470034214SMatthew G. Knepley } 19570034214SMatthew G. Knepley *adjSize = numAdj; 19670034214SMatthew G. Knepley PetscFunctionReturn(0); 19770034214SMatthew G. Knepley } 19870034214SMatthew G. Knepley 19970034214SMatthew G. Knepley #undef __FUNCT__ 20070034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency_Support_Internal" 20170034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 20270034214SMatthew G. Knepley { 20370034214SMatthew G. Knepley const PetscInt *support = NULL; 20470034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 20570034214SMatthew G. Knepley PetscErrorCode ierr; 20670034214SMatthew G. Knepley 20770034214SMatthew G. Knepley PetscFunctionBeginHot; 20870034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 20970034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 21070034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 21170034214SMatthew G. Knepley const PetscInt *cone = NULL; 21270034214SMatthew G. Knepley PetscInt coneSize, c, q; 21370034214SMatthew G. Knepley 21470034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[s], &coneSize);CHKERRQ(ierr); 21570034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, support[s], &cone);CHKERRQ(ierr); 21670034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 21770034214SMatthew G. Knepley for (q = 0; q < numAdj || (adj[numAdj++] = cone[c],0); ++q) { 21870034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 21970034214SMatthew G. Knepley } 22070034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 22170034214SMatthew G. Knepley } 22270034214SMatthew G. Knepley } 22370034214SMatthew G. Knepley *adjSize = numAdj; 22470034214SMatthew G. Knepley PetscFunctionReturn(0); 22570034214SMatthew G. Knepley } 22670034214SMatthew G. Knepley 22770034214SMatthew G. Knepley #undef __FUNCT__ 22870034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency_Transitive_Internal" 22970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 23070034214SMatthew G. Knepley { 23170034214SMatthew G. Knepley PetscInt *star = NULL; 23270034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 23370034214SMatthew G. Knepley PetscErrorCode ierr; 23470034214SMatthew G. Knepley 23570034214SMatthew G. Knepley PetscFunctionBeginHot; 23670034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 23770034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 23870034214SMatthew G. Knepley const PetscInt *closure = NULL; 23970034214SMatthew G. Knepley PetscInt closureSize, c, q; 24070034214SMatthew G. Knepley 24170034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 24270034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 24370034214SMatthew G. Knepley for (q = 0; q < numAdj || (adj[numAdj++] = closure[c],0); ++q) { 24470034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 24570034214SMatthew G. Knepley } 24670034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 24770034214SMatthew G. Knepley } 24870034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 24970034214SMatthew G. Knepley } 25070034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 25170034214SMatthew G. Knepley *adjSize = numAdj; 25270034214SMatthew G. Knepley PetscFunctionReturn(0); 25370034214SMatthew G. Knepley } 25470034214SMatthew G. Knepley 25570034214SMatthew G. Knepley #undef __FUNCT__ 25670034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency_Internal" 257*8b0b4c70SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useConstraints, PetscInt *adjSize, PetscInt *adj[]) 25870034214SMatthew G. Knepley { 25979bad331SMatthew G. Knepley static PetscInt asiz = 0; 260*8b0b4c70SToby Isaac PetscInt maxAnchors = 1; 261*8b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 262*8b0b4c70SToby Isaac PetscInt maxAdjSize; 263*8b0b4c70SToby Isaac PetscSection aSec = NULL; 264*8b0b4c70SToby Isaac IS aIS = NULL; 265*8b0b4c70SToby Isaac const PetscInt *anchors; 26670034214SMatthew G. Knepley PetscErrorCode ierr; 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley PetscFunctionBeginHot; 269*8b0b4c70SToby Isaac if (useConstraints) { 270*8b0b4c70SToby Isaac ierr = DMPlexGetConstraints(dm,&aSec,&aIS);CHKERRQ(ierr); 271*8b0b4c70SToby Isaac if (aSec) { 272*8b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 273*8b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 274*8b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 275*8b0b4c70SToby Isaac } 276*8b0b4c70SToby Isaac } 27779bad331SMatthew G. Knepley if (!*adj) { 27879bad331SMatthew G. Knepley PetscInt depth, maxConeSize, maxSupportSize; 27979bad331SMatthew G. Knepley 28079bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 28179bad331SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 28279bad331SMatthew G. Knepley asiz = PetscPowInt(maxConeSize, depth+1) * PetscPowInt(maxSupportSize, depth+1) + 1; 283*8b0b4c70SToby Isaac asiz *= maxAnchors; 28479bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 28579bad331SMatthew G. Knepley } 28679bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 287*8b0b4c70SToby Isaac maxAdjSize = *adjSize; 28870034214SMatthew G. Knepley if (useTransitiveClosure) { 28979bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 29070034214SMatthew G. Knepley } else if (useCone) { 29179bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 29270034214SMatthew G. Knepley } else { 29379bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 29470034214SMatthew G. Knepley } 295*8b0b4c70SToby Isaac if (useConstraints && aSec) { 296*8b0b4c70SToby Isaac PetscInt origSize = *adjSize; 297*8b0b4c70SToby Isaac PetscInt numAdj = origSize; 298*8b0b4c70SToby Isaac PetscInt i = 0, j; 299*8b0b4c70SToby Isaac PetscInt *orig = *adj; 300*8b0b4c70SToby Isaac 301*8b0b4c70SToby Isaac while (i < origSize) { 302*8b0b4c70SToby Isaac PetscInt p = orig[i]; 303*8b0b4c70SToby Isaac PetscInt aDof = 0; 304*8b0b4c70SToby Isaac 305*8b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 306*8b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 307*8b0b4c70SToby Isaac } 308*8b0b4c70SToby Isaac if (aDof) { 309*8b0b4c70SToby Isaac PetscInt aOff; 310*8b0b4c70SToby Isaac PetscInt s, q; 311*8b0b4c70SToby Isaac 312*8b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 313*8b0b4c70SToby Isaac orig[j - 1] = orig[j]; 314*8b0b4c70SToby Isaac } 315*8b0b4c70SToby Isaac origSize--; 316*8b0b4c70SToby Isaac numAdj--; 317*8b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 318*8b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 319*8b0b4c70SToby Isaac for (q = 0; q < numAdj || (orig[numAdj++] = anchors[aOff+s],0); ++q) { 320*8b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 321*8b0b4c70SToby Isaac } 322*8b0b4c70SToby Isaac if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 323*8b0b4c70SToby Isaac } 324*8b0b4c70SToby Isaac } 325*8b0b4c70SToby Isaac else { 326*8b0b4c70SToby Isaac i++; 327*8b0b4c70SToby Isaac } 328*8b0b4c70SToby Isaac } 329*8b0b4c70SToby Isaac *adjSize = numAdj; 330*8b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 331*8b0b4c70SToby Isaac } 33270034214SMatthew G. Knepley PetscFunctionReturn(0); 33370034214SMatthew G. Knepley } 33470034214SMatthew G. Knepley 33570034214SMatthew G. Knepley #undef __FUNCT__ 33670034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency" 33770034214SMatthew G. Knepley /*@ 33870034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 33970034214SMatthew G. Knepley 34070034214SMatthew G. Knepley Input Parameters: 34170034214SMatthew G. Knepley + dm - The DM object 34270034214SMatthew G. Knepley . p - The point 34370034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE 34470034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize 34570034214SMatthew G. Knepley 34670034214SMatthew G. Knepley Output Parameters: 34770034214SMatthew G. Knepley + adjSize - The number of adjacent points 34870034214SMatthew G. Knepley - adj - The adjacent points 34970034214SMatthew G. Knepley 35070034214SMatthew G. Knepley Level: advanced 35170034214SMatthew G. Knepley 35270034214SMatthew G. Knepley Notes: The user must PetscFree the adj array if it was not passed in. 35370034214SMatthew G. Knepley 35470034214SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 35570034214SMatthew G. Knepley @*/ 35670034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 35770034214SMatthew G. Knepley { 35870034214SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 35970034214SMatthew G. Knepley PetscErrorCode ierr; 36070034214SMatthew G. Knepley 36170034214SMatthew G. Knepley PetscFunctionBeginHot; 36270034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36370034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 36470034214SMatthew G. Knepley PetscValidPointer(adj,4); 365*8b0b4c70SToby Isaac ierr = DMPlexGetAdjacency_Internal(dm, p, mesh->useCone, mesh->useClosure, mesh->useConstraints, adjSize, adj);CHKERRQ(ierr); 36670034214SMatthew G. Knepley PetscFunctionReturn(0); 36770034214SMatthew G. Knepley } 36870034214SMatthew G. Knepley 36970034214SMatthew G. Knepley #undef __FUNCT__ 37070034214SMatthew G. Knepley #define __FUNCT__ "DMPlexDistributeField" 37170034214SMatthew G. Knepley /*@ 37270034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 37370034214SMatthew G. Knepley 37470034214SMatthew G. Knepley Collective on DM 37570034214SMatthew G. Knepley 37670034214SMatthew G. Knepley Input Parameters: 37770034214SMatthew G. Knepley + dm - The DMPlex object 37870034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 37970034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 38070034214SMatthew G. Knepley - originalVec - The existing data 38170034214SMatthew G. Knepley 38270034214SMatthew G. Knepley Output Parameters: 38370034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 38470034214SMatthew G. Knepley - newVec - The new data 38570034214SMatthew G. Knepley 38670034214SMatthew G. Knepley Level: developer 38770034214SMatthew G. Knepley 38870034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeData() 38970034214SMatthew G. Knepley @*/ 39070034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 39170034214SMatthew G. Knepley { 39270034214SMatthew G. Knepley PetscSF fieldSF; 39370034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 39470034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 39570034214SMatthew G. Knepley PetscErrorCode ierr; 39670034214SMatthew G. Knepley 39770034214SMatthew G. Knepley PetscFunctionBegin; 39870034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 39970034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 40070034214SMatthew G. Knepley 40170034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 40270034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 40370034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 40470034214SMatthew G. Knepley 40570034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 40670034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 40770034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 40870034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 40970034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 41070034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 41170034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 41270034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 41370034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 41470034214SMatthew G. Knepley PetscFunctionReturn(0); 41570034214SMatthew G. Knepley } 41670034214SMatthew G. Knepley 41770034214SMatthew G. Knepley #undef __FUNCT__ 41870034214SMatthew G. Knepley #define __FUNCT__ "DMPlexDistributeData" 41970034214SMatthew G. Knepley /*@ 42070034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 42170034214SMatthew G. Knepley 42270034214SMatthew G. Knepley Collective on DM 42370034214SMatthew G. Knepley 42470034214SMatthew G. Knepley Input Parameters: 42570034214SMatthew G. Knepley + dm - The DMPlex object 42670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 42770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 42870034214SMatthew G. Knepley . datatype - The type of data 42970034214SMatthew G. Knepley - originalData - The existing data 43070034214SMatthew G. Knepley 43170034214SMatthew G. Knepley Output Parameters: 43270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 43370034214SMatthew G. Knepley - newData - The new data 43470034214SMatthew G. Knepley 43570034214SMatthew G. Knepley Level: developer 43670034214SMatthew G. Knepley 43770034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 43870034214SMatthew G. Knepley @*/ 43970034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 44070034214SMatthew G. Knepley { 44170034214SMatthew G. Knepley PetscSF fieldSF; 44270034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 44370034214SMatthew G. Knepley PetscMPIInt dataSize; 44470034214SMatthew G. Knepley PetscErrorCode ierr; 44570034214SMatthew G. Knepley 44670034214SMatthew G. Knepley PetscFunctionBegin; 44770034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 44870034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 44970034214SMatthew G. Knepley 45070034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 45170034214SMatthew G. Knepley ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr); 45270034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 45370034214SMatthew G. Knepley 45470034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 45570034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 45670034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 45770034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 45870034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 45970034214SMatthew G. Knepley PetscFunctionReturn(0); 46070034214SMatthew G. Knepley } 46170034214SMatthew G. Knepley 46270034214SMatthew G. Knepley #undef __FUNCT__ 46370034214SMatthew G. Knepley #define __FUNCT__ "DMPlexDistribute" 46470034214SMatthew G. Knepley /*@C 46570034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 46670034214SMatthew G. Knepley 46770034214SMatthew G. Knepley Not Collective 46870034214SMatthew G. Knepley 46970034214SMatthew G. Knepley Input Parameter: 47070034214SMatthew G. Knepley + dm - The original DMPlex object 47170034214SMatthew G. Knepley . partitioner - The partitioning package, or NULL for the default 47270034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 47370034214SMatthew G. Knepley 47470034214SMatthew G. Knepley Output Parameter: 47570034214SMatthew G. Knepley + sf - The PetscSF used for point distribution 47670034214SMatthew G. Knepley - parallelMesh - The distributed DMPlex object, or NULL 47770034214SMatthew G. Knepley 478a9c22940SMatthew G. Knepley Note: If the mesh was not distributed, the return value is NULL. 479a9c22940SMatthew G. Knepley 480a9c22940SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMPlexGetAdjacencyUseCone() and 481a9c22940SMatthew G. Knepley DMPlexSetAdjacencyUseClosure(). They should choose the combination appropriate for the function 482a9c22940SMatthew G. Knepley representation on the mesh. 48370034214SMatthew G. Knepley 48470034214SMatthew G. Knepley Level: intermediate 48570034214SMatthew G. Knepley 48670034214SMatthew G. Knepley .keywords: mesh, elements 487a9c22940SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure() 48870034214SMatthew G. Knepley @*/ 48970034214SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, const char partitioner[], PetscInt overlap, PetscSF *sf, DM *dmParallel) 49070034214SMatthew G. Knepley { 49170034214SMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data, *pmesh; 49270034214SMatthew G. Knepley MPI_Comm comm; 49370034214SMatthew G. Knepley const PetscInt height = 0; 49470034214SMatthew G. Knepley PetscInt dim, numRemoteRanks; 49570034214SMatthew G. Knepley IS origCellPart, origPart, cellPart, part; 49670034214SMatthew G. Knepley PetscSection origCellPartSection, origPartSection, cellPartSection, partSection; 49770034214SMatthew G. Knepley PetscSFNode *remoteRanks; 49870034214SMatthew G. Knepley PetscSF partSF, pointSF, coneSF; 49970034214SMatthew G. Knepley ISLocalToGlobalMapping renumbering; 50070034214SMatthew G. Knepley PetscSection originalConeSection, newConeSection; 50170034214SMatthew G. Knepley PetscInt *remoteOffsets; 50270034214SMatthew G. Knepley PetscInt *cones, *newCones, newConesSize; 50370034214SMatthew G. Knepley PetscBool flg; 50470034214SMatthew G. Knepley PetscMPIInt rank, numProcs, p; 50570034214SMatthew G. Knepley PetscErrorCode ierr; 50670034214SMatthew G. Knepley 50770034214SMatthew G. Knepley PetscFunctionBegin; 50870034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50970034214SMatthew G. Knepley if (sf) PetscValidPointer(sf,4); 51070034214SMatthew G. Knepley PetscValidPointer(dmParallel,5); 51170034214SMatthew G. Knepley 51270034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 51370034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 51470034214SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 51570034214SMatthew G. Knepley ierr = MPI_Comm_size(comm, &numProcs);CHKERRQ(ierr); 51670034214SMatthew G. Knepley 51770034214SMatthew G. Knepley *dmParallel = NULL; 51870034214SMatthew G. Knepley if (numProcs == 1) PetscFunctionReturn(0); 51970034214SMatthew G. Knepley 520c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 52170034214SMatthew G. Knepley /* Create cell partition - We need to rewrite to use IS, use the MatPartition stuff */ 52270034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 52370034214SMatthew G. Knepley if (overlap > 1) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Overlap > 1 not yet implemented"); 52470034214SMatthew G. Knepley ierr = DMPlexCreatePartition(dm, partitioner, height, overlap > 0 ? PETSC_TRUE : PETSC_FALSE, &cellPartSection, &cellPart, &origCellPartSection, &origCellPart);CHKERRQ(ierr); 52570034214SMatthew G. Knepley /* Create SF assuming a serial partition for all processes: Could check for IS length here */ 52670034214SMatthew G. Knepley if (!rank) numRemoteRanks = numProcs; 52770034214SMatthew G. Knepley else numRemoteRanks = 0; 52870034214SMatthew G. Knepley ierr = PetscMalloc1(numRemoteRanks, &remoteRanks);CHKERRQ(ierr); 52970034214SMatthew G. Knepley for (p = 0; p < numRemoteRanks; ++p) { 53070034214SMatthew G. Knepley remoteRanks[p].rank = p; 53170034214SMatthew G. Knepley remoteRanks[p].index = 0; 53270034214SMatthew G. Knepley } 53370034214SMatthew G. Knepley ierr = PetscSFCreate(comm, &partSF);CHKERRQ(ierr); 53470034214SMatthew G. Knepley ierr = PetscSFSetGraph(partSF, 1, numRemoteRanks, NULL, PETSC_OWN_POINTER, remoteRanks, PETSC_OWN_POINTER);CHKERRQ(ierr); 53570034214SMatthew G. Knepley ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 53670034214SMatthew G. Knepley if (flg) { 53770034214SMatthew G. Knepley ierr = PetscPrintf(comm, "Cell Partition:\n");CHKERRQ(ierr); 53870034214SMatthew G. Knepley ierr = PetscSectionView(cellPartSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 53970034214SMatthew G. Knepley ierr = ISView(cellPart, NULL);CHKERRQ(ierr); 54070034214SMatthew G. Knepley if (origCellPart) { 54170034214SMatthew G. Knepley ierr = PetscPrintf(comm, "Original Cell Partition:\n");CHKERRQ(ierr); 54270034214SMatthew G. Knepley ierr = PetscSectionView(origCellPartSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 54370034214SMatthew G. Knepley ierr = ISView(origCellPart, NULL);CHKERRQ(ierr); 54470034214SMatthew G. Knepley } 54570034214SMatthew G. Knepley ierr = PetscSFView(partSF, NULL);CHKERRQ(ierr); 54670034214SMatthew G. Knepley } 54770034214SMatthew G. Knepley /* Close the partition over the mesh */ 54870034214SMatthew G. Knepley ierr = DMPlexCreatePartitionClosure(dm, cellPartSection, cellPart, &partSection, &part);CHKERRQ(ierr); 54970034214SMatthew G. Knepley ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 55070034214SMatthew G. Knepley ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 55170034214SMatthew G. Knepley /* Create new mesh */ 55270034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 553c73cfb54SMatthew G. Knepley ierr = DMSetDimension(*dmParallel, dim);CHKERRQ(ierr); 55470034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 55570034214SMatthew G. Knepley pmesh = (DM_Plex*) (*dmParallel)->data; 55670034214SMatthew G. Knepley /* Distribute sieve points and the global point numbering (replaces creating remote bases) */ 55770034214SMatthew G. Knepley ierr = PetscSFConvertPartition(partSF, partSection, part, &renumbering, &pointSF);CHKERRQ(ierr); 55870034214SMatthew G. Knepley if (flg) { 55970034214SMatthew G. Knepley ierr = PetscPrintf(comm, "Point Partition:\n");CHKERRQ(ierr); 56070034214SMatthew G. Knepley ierr = PetscSectionView(partSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 56170034214SMatthew G. Knepley ierr = ISView(part, NULL);CHKERRQ(ierr); 56270034214SMatthew G. Knepley ierr = PetscSFView(pointSF, NULL);CHKERRQ(ierr); 56370034214SMatthew G. Knepley ierr = PetscPrintf(comm, "Point Renumbering after partition:\n");CHKERRQ(ierr); 56470034214SMatthew G. Knepley ierr = ISLocalToGlobalMappingView(renumbering, NULL);CHKERRQ(ierr); 56570034214SMatthew G. Knepley } 56670034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 56770034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 56870034214SMatthew G. Knepley /* Distribute cone section */ 56970034214SMatthew G. Knepley ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 57070034214SMatthew G. Knepley ierr = DMPlexGetConeSection(*dmParallel, &newConeSection);CHKERRQ(ierr); 57170034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 57270034214SMatthew G. Knepley ierr = DMSetUp(*dmParallel);CHKERRQ(ierr); 57370034214SMatthew G. Knepley { 57470034214SMatthew G. Knepley PetscInt pStart, pEnd, p; 57570034214SMatthew G. Knepley 57670034214SMatthew G. Knepley ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 57770034214SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 57870034214SMatthew G. Knepley PetscInt coneSize; 57970034214SMatthew G. Knepley ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 58070034214SMatthew G. Knepley pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 58170034214SMatthew G. Knepley } 58270034214SMatthew G. Knepley } 58370034214SMatthew G. Knepley /* Communicate and renumber cones */ 58470034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 58570034214SMatthew G. Knepley ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 58670034214SMatthew G. Knepley ierr = DMPlexGetCones(*dmParallel, &newCones);CHKERRQ(ierr); 58770034214SMatthew G. Knepley ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 58870034214SMatthew G. Knepley ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 58970034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 5909d90f715SBarry Smith ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 59170034214SMatthew G. Knepley ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 59270034214SMatthew G. Knepley if (flg) { 59370034214SMatthew G. Knepley ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 59470034214SMatthew G. Knepley ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 59570034214SMatthew G. Knepley ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 59670034214SMatthew G. Knepley ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 59770034214SMatthew G. Knepley ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 59870034214SMatthew G. Knepley } 59970034214SMatthew G. Knepley ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 60070034214SMatthew G. Knepley ierr = DMPlexGetConeOrientations(*dmParallel, &newCones);CHKERRQ(ierr); 60170034214SMatthew G. Knepley ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 60270034214SMatthew G. Knepley ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 60370034214SMatthew G. Knepley ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 60470034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 60570034214SMatthew G. Knepley /* Create supports and stratify sieve */ 60670034214SMatthew G. Knepley { 60770034214SMatthew G. Knepley PetscInt pStart, pEnd; 60870034214SMatthew G. Knepley 60970034214SMatthew G. Knepley ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 61070034214SMatthew G. Knepley ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 61170034214SMatthew G. Knepley } 61270034214SMatthew G. Knepley ierr = DMPlexSymmetrize(*dmParallel);CHKERRQ(ierr); 61370034214SMatthew G. Knepley ierr = DMPlexStratify(*dmParallel);CHKERRQ(ierr); 61470034214SMatthew G. Knepley /* Create point SF for parallel mesh */ 61570034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 61670034214SMatthew G. Knepley { 61770034214SMatthew G. Knepley const PetscInt *leaves; 61870034214SMatthew G. Knepley PetscSFNode *remotePoints, *rowners, *lowners; 61970034214SMatthew G. Knepley PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 62070034214SMatthew G. Knepley PetscInt pStart, pEnd; 62170034214SMatthew G. Knepley 62270034214SMatthew G. Knepley ierr = DMPlexGetChart(*dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 62370034214SMatthew G. Knepley ierr = PetscSFGetGraph(pointSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 62470034214SMatthew G. Knepley ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 62570034214SMatthew G. Knepley for (p=0; p<numRoots; p++) { 62670034214SMatthew G. Knepley rowners[p].rank = -1; 62770034214SMatthew G. Knepley rowners[p].index = -1; 62870034214SMatthew G. Knepley } 62970034214SMatthew G. Knepley if (origCellPart) { 63070034214SMatthew G. Knepley /* Make sure points in the original partition are not assigned to other procs */ 63170034214SMatthew G. Knepley const PetscInt *origPoints; 63270034214SMatthew G. Knepley 63370034214SMatthew G. Knepley ierr = DMPlexCreatePartitionClosure(dm, origCellPartSection, origCellPart, &origPartSection, &origPart);CHKERRQ(ierr); 63470034214SMatthew G. Knepley ierr = ISGetIndices(origPart, &origPoints);CHKERRQ(ierr); 63570034214SMatthew G. Knepley for (p = 0; p < numProcs; ++p) { 63670034214SMatthew G. Knepley PetscInt dof, off, d; 63770034214SMatthew G. Knepley 63870034214SMatthew G. Knepley ierr = PetscSectionGetDof(origPartSection, p, &dof);CHKERRQ(ierr); 63970034214SMatthew G. Knepley ierr = PetscSectionGetOffset(origPartSection, p, &off);CHKERRQ(ierr); 64070034214SMatthew G. Knepley for (d = off; d < off+dof; ++d) { 64170034214SMatthew G. Knepley rowners[origPoints[d]].rank = p; 64270034214SMatthew G. Knepley } 64370034214SMatthew G. Knepley } 64470034214SMatthew G. Knepley ierr = ISRestoreIndices(origPart, &origPoints);CHKERRQ(ierr); 64570034214SMatthew G. Knepley ierr = ISDestroy(&origPart);CHKERRQ(ierr); 64670034214SMatthew G. Knepley ierr = PetscSectionDestroy(&origPartSection);CHKERRQ(ierr); 64770034214SMatthew G. Knepley } 64870034214SMatthew G. Knepley ierr = ISDestroy(&origCellPart);CHKERRQ(ierr); 64970034214SMatthew G. Knepley ierr = PetscSectionDestroy(&origCellPartSection);CHKERRQ(ierr); 65070034214SMatthew G. Knepley 65170034214SMatthew G. Knepley ierr = PetscSFBcastBegin(pointSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 65270034214SMatthew G. Knepley ierr = PetscSFBcastEnd(pointSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 65370034214SMatthew G. Knepley for (p = 0; p < numLeaves; ++p) { 65470034214SMatthew G. Knepley if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 65570034214SMatthew G. Knepley lowners[p].rank = rank; 65670034214SMatthew G. Knepley lowners[p].index = leaves ? leaves[p] : p; 65770034214SMatthew G. Knepley } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 65870034214SMatthew G. Knepley lowners[p].rank = -2; 65970034214SMatthew G. Knepley lowners[p].index = -2; 66070034214SMatthew G. Knepley } 66170034214SMatthew G. Knepley } 66270034214SMatthew G. Knepley for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 66370034214SMatthew G. Knepley rowners[p].rank = -3; 66470034214SMatthew G. Knepley rowners[p].index = -3; 66570034214SMatthew G. Knepley } 66670034214SMatthew G. Knepley ierr = PetscSFReduceBegin(pointSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 66770034214SMatthew G. Knepley ierr = PetscSFReduceEnd(pointSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 66870034214SMatthew G. Knepley ierr = PetscSFBcastBegin(pointSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 66970034214SMatthew G. Knepley ierr = PetscSFBcastEnd(pointSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 67070034214SMatthew G. Knepley for (p = 0; p < numLeaves; ++p) { 67170034214SMatthew G. Knepley if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 67270034214SMatthew G. Knepley if (lowners[p].rank != rank) ++numGhostPoints; 67370034214SMatthew G. Knepley } 67470034214SMatthew G. Knepley ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 67570034214SMatthew G. Knepley ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 67670034214SMatthew G. Knepley for (p = 0, gp = 0; p < numLeaves; ++p) { 67770034214SMatthew G. Knepley if (lowners[p].rank != rank) { 67870034214SMatthew G. Knepley ghostPoints[gp] = leaves ? leaves[p] : p; 67970034214SMatthew G. Knepley remotePoints[gp].rank = lowners[p].rank; 68070034214SMatthew G. Knepley remotePoints[gp].index = lowners[p].index; 68170034214SMatthew G. Knepley ++gp; 68270034214SMatthew G. Knepley } 68370034214SMatthew G. Knepley } 68470034214SMatthew G. Knepley ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 68570034214SMatthew G. Knepley ierr = PetscSFSetGraph((*dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 68670034214SMatthew G. Knepley ierr = PetscSFSetFromOptions((*dmParallel)->sf);CHKERRQ(ierr); 68770034214SMatthew G. Knepley } 688a42b08eeSMatthew G. Knepley pmesh->useCone = mesh->useCone; 689a42b08eeSMatthew G. Knepley pmesh->useClosure = mesh->useClosure; 69070034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 691bf5244c7SMatthew G. Knepley /* Distribute Coordinates */ 692bf5244c7SMatthew G. Knepley { 693bf5244c7SMatthew G. Knepley PetscSection originalCoordSection, newCoordSection; 694bf5244c7SMatthew G. Knepley Vec originalCoordinates, newCoordinates; 695bf5244c7SMatthew G. Knepley PetscInt bs; 696bf5244c7SMatthew G. Knepley const char *name; 697bf5244c7SMatthew G. Knepley const PetscReal *maxCell, *L; 698bf5244c7SMatthew G. Knepley 699bf5244c7SMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 700bf5244c7SMatthew G. Knepley ierr = DMGetCoordinateSection(*dmParallel, &newCoordSection);CHKERRQ(ierr); 701bf5244c7SMatthew G. Knepley ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 702bf5244c7SMatthew G. Knepley ierr = VecCreate(comm, &newCoordinates);CHKERRQ(ierr); 703bf5244c7SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 704bf5244c7SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 705bf5244c7SMatthew G. Knepley 706bf5244c7SMatthew G. Knepley ierr = DMPlexDistributeField(dm, pointSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 707bf5244c7SMatthew G. Knepley ierr = DMSetCoordinatesLocal(*dmParallel, newCoordinates);CHKERRQ(ierr); 708bf5244c7SMatthew G. Knepley ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 709bf5244c7SMatthew G. Knepley ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 710bf5244c7SMatthew G. Knepley ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 711bf5244c7SMatthew G. Knepley ierr = DMGetPeriodicity(dm, &maxCell, &L);CHKERRQ(ierr); 712bf5244c7SMatthew G. Knepley if (L) {ierr = DMSetPeriodicity(*dmParallel, maxCell, L);CHKERRQ(ierr);} 713bf5244c7SMatthew G. Knepley } 714bf5244c7SMatthew G. Knepley /* Distribute labels */ 715bf5244c7SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 716bf5244c7SMatthew G. Knepley { 717bf5244c7SMatthew G. Knepley DMLabel next = mesh->labels, newNext = pmesh->labels; 718bf5244c7SMatthew G. Knepley PetscInt numLabels = 0, l; 719bf5244c7SMatthew G. Knepley 720bf5244c7SMatthew G. Knepley /* Bcast number of labels */ 721bf5244c7SMatthew G. Knepley while (next) {++numLabels; next = next->next;} 722bf5244c7SMatthew G. Knepley ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr); 723bf5244c7SMatthew G. Knepley next = mesh->labels; 724bf5244c7SMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 725bf5244c7SMatthew G. Knepley DMLabel labelNew; 726bf5244c7SMatthew G. Knepley PetscBool isdepth; 727bf5244c7SMatthew G. Knepley 728bf5244c7SMatthew G. Knepley /* Skip "depth" because it is recreated */ 729bf5244c7SMatthew G. Knepley if (!rank) {ierr = PetscStrcmp(next->name, "depth", &isdepth);CHKERRQ(ierr);} 730bf5244c7SMatthew G. Knepley ierr = MPI_Bcast(&isdepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 731bf5244c7SMatthew G. Knepley if (isdepth) {if (!rank) next = next->next; continue;} 732bf5244c7SMatthew G. Knepley ierr = DMLabelDistribute(next, partSection, part, renumbering, &labelNew);CHKERRQ(ierr); 733bf5244c7SMatthew G. Knepley /* Insert into list */ 734bf5244c7SMatthew G. Knepley if (newNext) newNext->next = labelNew; 735bf5244c7SMatthew G. Knepley else pmesh->labels = labelNew; 736bf5244c7SMatthew G. Knepley newNext = labelNew; 737bf5244c7SMatthew G. Knepley if (!rank) next = next->next; 738bf5244c7SMatthew G. Knepley } 739bf5244c7SMatthew G. Knepley } 740bf5244c7SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 741bf5244c7SMatthew G. Knepley /* Setup hybrid structure */ 742bf5244c7SMatthew G. Knepley { 743bf5244c7SMatthew G. Knepley const PetscInt *gpoints; 744bf5244c7SMatthew G. Knepley PetscInt depth, n, d; 745bf5244c7SMatthew G. Knepley 746bf5244c7SMatthew G. Knepley for (d = 0; d <= dim; ++d) {pmesh->hybridPointMax[d] = mesh->hybridPointMax[d];} 747bf5244c7SMatthew G. Knepley ierr = MPI_Bcast(pmesh->hybridPointMax, dim+1, MPIU_INT, 0, comm);CHKERRQ(ierr); 748bf5244c7SMatthew G. Knepley ierr = ISLocalToGlobalMappingGetSize(renumbering, &n);CHKERRQ(ierr); 749bf5244c7SMatthew G. Knepley ierr = ISLocalToGlobalMappingGetIndices(renumbering, &gpoints);CHKERRQ(ierr); 750bf5244c7SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 751bf5244c7SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 752bf5244c7SMatthew G. Knepley PetscInt pmax = pmesh->hybridPointMax[d], newmax = 0, pEnd, stratum[2], p; 753bf5244c7SMatthew G. Knepley 754bf5244c7SMatthew G. Knepley if (pmax < 0) continue; 755bf5244c7SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, d > depth ? depth : d, &stratum[0], &stratum[1]);CHKERRQ(ierr); 756bf5244c7SMatthew G. Knepley ierr = DMPlexGetDepthStratum(*dmParallel, d, NULL, &pEnd);CHKERRQ(ierr); 757bf5244c7SMatthew G. Knepley ierr = MPI_Bcast(stratum, 2, MPIU_INT, 0, comm);CHKERRQ(ierr); 758bf5244c7SMatthew G. Knepley for (p = 0; p < n; ++p) { 759bf5244c7SMatthew G. Knepley const PetscInt point = gpoints[p]; 760bf5244c7SMatthew G. Knepley 761bf5244c7SMatthew G. Knepley if ((point >= stratum[0]) && (point < stratum[1]) && (point >= pmax)) ++newmax; 762bf5244c7SMatthew G. Knepley } 763bf5244c7SMatthew G. Knepley if (newmax > 0) pmesh->hybridPointMax[d] = pEnd - newmax; 764bf5244c7SMatthew G. Knepley else pmesh->hybridPointMax[d] = -1; 765bf5244c7SMatthew G. Knepley } 766bf5244c7SMatthew G. Knepley ierr = ISLocalToGlobalMappingRestoreIndices(renumbering, &gpoints);CHKERRQ(ierr); 767bf5244c7SMatthew G. Knepley } 768bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 769bf5244c7SMatthew G. Knepley ierr = ISLocalToGlobalMappingDestroy(&renumbering);CHKERRQ(ierr); 770bf5244c7SMatthew G. Knepley ierr = PetscSFDestroy(&partSF);CHKERRQ(ierr); 771bf5244c7SMatthew G. Knepley ierr = PetscSectionDestroy(&partSection);CHKERRQ(ierr); 772bf5244c7SMatthew G. Knepley ierr = ISDestroy(&part);CHKERRQ(ierr); 77386719b60SMatthew G. Knepley /* Copy BC */ 77486719b60SMatthew G. Knepley ierr = DMPlexCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); 77570034214SMatthew G. Knepley /* Cleanup */ 77670034214SMatthew G. Knepley if (sf) {*sf = pointSF;} 77770034214SMatthew G. Knepley else {ierr = PetscSFDestroy(&pointSF);CHKERRQ(ierr);} 77870034214SMatthew G. Knepley ierr = DMSetFromOptions(*dmParallel);CHKERRQ(ierr); 77970034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 78070034214SMatthew G. Knepley PetscFunctionReturn(0); 78170034214SMatthew G. Knepley } 782