1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19*b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser() 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 393c1f0c11SLawrence Mitchell - user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44*b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser() 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66*b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89*b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 975b317d89SToby Isaac PetscValidIntPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley PetscErrorCode ierr; 10770034214SMatthew G. Knepley 10870034214SMatthew G. Knepley PetscFunctionBeginHot; 10970034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 11070034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 1114b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1124b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11370034214SMatthew G. Knepley const PetscInt *support = NULL; 11470034214SMatthew G. Knepley PetscInt supportSize, s, q; 11570034214SMatthew G. Knepley 1164b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 1174b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 11870034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 119527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 12070034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12170034214SMatthew G. Knepley } 12270034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley } 12570034214SMatthew G. Knepley *adjSize = numAdj; 12670034214SMatthew G. Knepley PetscFunctionReturn(0); 12770034214SMatthew G. Knepley } 12870034214SMatthew G. Knepley 12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 13070034214SMatthew G. Knepley { 13170034214SMatthew G. Knepley const PetscInt *support = NULL; 13270034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13370034214SMatthew G. Knepley PetscErrorCode ierr; 13470034214SMatthew G. Knepley 13570034214SMatthew G. Knepley PetscFunctionBeginHot; 13670034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 13770034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 1384b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1394b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 14070034214SMatthew G. Knepley const PetscInt *cone = NULL; 14170034214SMatthew G. Knepley PetscInt coneSize, c, q; 14270034214SMatthew G. Knepley 1434b6b44bdSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1444b6b44bdSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 14570034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 146527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14770034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 15070034214SMatthew G. Knepley } 15170034214SMatthew G. Knepley } 15270034214SMatthew G. Knepley *adjSize = numAdj; 15370034214SMatthew G. Knepley PetscFunctionReturn(0); 15470034214SMatthew G. Knepley } 15570034214SMatthew G. Knepley 15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15770034214SMatthew G. Knepley { 15870034214SMatthew G. Knepley PetscInt *star = NULL; 15970034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 16070034214SMatthew G. Knepley PetscErrorCode ierr; 16170034214SMatthew G. Knepley 16270034214SMatthew G. Knepley PetscFunctionBeginHot; 16370034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 16470034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16570034214SMatthew G. Knepley const PetscInt *closure = NULL; 16670034214SMatthew G. Knepley PetscInt closureSize, c, q; 16770034214SMatthew G. Knepley 16870034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 16970034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 170527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 17170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 17270034214SMatthew G. Knepley } 17370034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 17470034214SMatthew G. Knepley } 17570034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 17670034214SMatthew G. Knepley } 17770034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 17870034214SMatthew G. Knepley *adjSize = numAdj; 17970034214SMatthew G. Knepley PetscFunctionReturn(0); 18070034214SMatthew G. Knepley } 18170034214SMatthew G. Knepley 1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18370034214SMatthew G. Knepley { 18479bad331SMatthew G. Knepley static PetscInt asiz = 0; 1858b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1868b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1878b0b4c70SToby Isaac PetscInt maxAdjSize; 1888b0b4c70SToby Isaac PetscSection aSec = NULL; 1898b0b4c70SToby Isaac IS aIS = NULL; 1908b0b4c70SToby Isaac const PetscInt *anchors; 1913c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 19270034214SMatthew G. Knepley PetscErrorCode ierr; 19370034214SMatthew G. Knepley 19470034214SMatthew G. Knepley PetscFunctionBeginHot; 1955b317d89SToby Isaac if (useAnchors) { 196a17985deSToby Isaac ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr); 1978b0b4c70SToby Isaac if (aSec) { 1988b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 19924c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 2008b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 2018b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 2028b0b4c70SToby Isaac } 2038b0b4c70SToby Isaac } 20479bad331SMatthew G. Knepley if (!*adj) { 20524c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20679bad331SMatthew G. Knepley 20724c766afSToby Isaac ierr = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr); 20879bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 20924c766afSToby Isaac ierr = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr); 21024c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 21124c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 21224c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2138b0b4c70SToby Isaac asiz *= maxAnchors; 21424c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 21579bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 21679bad331SMatthew G. Knepley } 21779bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2188b0b4c70SToby Isaac maxAdjSize = *adjSize; 2193c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2203c1f0c11SLawrence Mitchell ierr = mesh->useradjacency(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr); 2213c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 22279bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 22370034214SMatthew G. Knepley } else if (useCone) { 22479bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22570034214SMatthew G. Knepley } else { 22679bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22770034214SMatthew G. Knepley } 2285b317d89SToby Isaac if (useAnchors && aSec) { 2298b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2308b0b4c70SToby Isaac PetscInt numAdj = origSize; 2318b0b4c70SToby Isaac PetscInt i = 0, j; 2328b0b4c70SToby Isaac PetscInt *orig = *adj; 2338b0b4c70SToby Isaac 2348b0b4c70SToby Isaac while (i < origSize) { 2358b0b4c70SToby Isaac PetscInt p = orig[i]; 2368b0b4c70SToby Isaac PetscInt aDof = 0; 2378b0b4c70SToby Isaac 2388b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2398b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 2408b0b4c70SToby Isaac } 2418b0b4c70SToby Isaac if (aDof) { 2428b0b4c70SToby Isaac PetscInt aOff; 2438b0b4c70SToby Isaac PetscInt s, q; 2448b0b4c70SToby Isaac 2458b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2468b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2478b0b4c70SToby Isaac } 2488b0b4c70SToby Isaac origSize--; 2498b0b4c70SToby Isaac numAdj--; 2508b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 2518b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 252527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2538b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2548b0b4c70SToby Isaac } 2558b0b4c70SToby Isaac if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 2568b0b4c70SToby Isaac } 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac else { 2598b0b4c70SToby Isaac i++; 2608b0b4c70SToby Isaac } 2618b0b4c70SToby Isaac } 2628b0b4c70SToby Isaac *adjSize = numAdj; 2638b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 2648b0b4c70SToby Isaac } 26570034214SMatthew G. Knepley PetscFunctionReturn(0); 26670034214SMatthew G. Knepley } 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley /*@ 26970034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 27070034214SMatthew G. Knepley 27170034214SMatthew G. Knepley Input Parameters: 27270034214SMatthew G. Knepley + dm - The DM object 27370034214SMatthew G. Knepley . p - The point 27470034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE 27570034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize 27670034214SMatthew G. Knepley 27770034214SMatthew G. Knepley Output Parameters: 27870034214SMatthew G. Knepley + adjSize - The number of adjacent points 27970034214SMatthew G. Knepley - adj - The adjacent points 28070034214SMatthew G. Knepley 28170034214SMatthew G. Knepley Level: advanced 28270034214SMatthew G. Knepley 28395452b02SPatrick Sanan Notes: 28495452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28570034214SMatthew G. Knepley 286*b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 28770034214SMatthew G. Knepley @*/ 28870034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 28970034214SMatthew G. Knepley { 2901cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 29170034214SMatthew G. Knepley PetscErrorCode ierr; 29270034214SMatthew G. Knepley 29370034214SMatthew G. Knepley PetscFunctionBeginHot; 29470034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29570034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 29670034214SMatthew G. Knepley PetscValidPointer(adj,4); 297*b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 2981cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 2991cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr); 30070034214SMatthew G. Knepley PetscFunctionReturn(0); 30170034214SMatthew G. Knepley } 30208633170SToby Isaac 303b0a623aaSMatthew G. Knepley /*@ 304b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 305b0a623aaSMatthew G. Knepley 306b0a623aaSMatthew G. Knepley Collective on DM 307b0a623aaSMatthew G. Knepley 308b0a623aaSMatthew G. Knepley Input Parameters: 309b0a623aaSMatthew G. Knepley + dm - The DM 310b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity 311b0a623aaSMatthew G. Knepley 312b0a623aaSMatthew G. Knepley Output Parameters: 313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 314b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley Level: developer 317b0a623aaSMatthew G. Knepley 318b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF() 319b0a623aaSMatthew G. Knepley @*/ 320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 321b0a623aaSMatthew G. Knepley { 322b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 323b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 324b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 325b0a623aaSMatthew G. Knepley const PetscInt *nranks; 326b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 327b0a623aaSMatthew G. Knepley PetscBT neighbors; 328b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3299852e123SBarry Smith PetscMPIInt size, proc, rank; 330b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 331b0a623aaSMatthew G. Knepley 332b0a623aaSMatthew G. Knepley PetscFunctionBegin; 333b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 334b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 335b0a623aaSMatthew G. Knepley if (processRanks) {PetscValidPointer(processRanks, 3);} 336b0a623aaSMatthew G. Knepley if (sfProcess) {PetscValidPointer(sfProcess, 4);} 3379852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 338b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 339b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr); 3409852e123SBarry Smith ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr); 3419852e123SBarry Smith ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr); 342b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 343b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr); 344b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr); 345b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 346b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 347b0a623aaSMatthew G. Knepley 348b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr); 349b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr); 350302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 351b0a623aaSMatthew G. Knepley } 352b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr); 353b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 354b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr); 355b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr); 356b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 357b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 358b0a623aaSMatthew G. Knepley 359b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr); 360b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr); 361302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 362b0a623aaSMatthew G. Knepley } 363b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr); 364b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 365b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 366b0a623aaSMatthew G. Knepley /* Calculate edges */ 367b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3689852e123SBarry Smith for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 369b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr); 370b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr); 371b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr); 3729852e123SBarry Smith for(proc = 0, n = 0; proc < size; ++proc) { 373b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 374b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 375b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 376b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 377b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 378b0a623aaSMatthew G. Knepley ++n; 379b0a623aaSMatthew G. Knepley } 380b0a623aaSMatthew G. Knepley } 381b0a623aaSMatthew G. Knepley ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr); 382b0a623aaSMatthew G. Knepley if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);} 383b0a623aaSMatthew G. Knepley else {ierr = PetscFree(ranksNew);CHKERRQ(ierr);} 384b0a623aaSMatthew G. Knepley if (sfProcess) { 385b0a623aaSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr); 386b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr); 387b0a623aaSMatthew G. Knepley ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr); 3889852e123SBarry Smith ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 389b0a623aaSMatthew G. Knepley } 390b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 391b0a623aaSMatthew G. Knepley } 392b0a623aaSMatthew G. Knepley 393b0a623aaSMatthew G. Knepley /*@ 394b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 395b0a623aaSMatthew G. Knepley 396b0a623aaSMatthew G. Knepley Collective on DM 397b0a623aaSMatthew G. Knepley 398b0a623aaSMatthew G. Knepley Input Parameter: 399b0a623aaSMatthew G. Knepley . dm - The DM 400b0a623aaSMatthew G. Knepley 401b0a623aaSMatthew G. Knepley Output Parameters: 402b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 403b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 404b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 405b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 406b0a623aaSMatthew G. Knepley 407b0a623aaSMatthew G. Knepley Level: developer 408b0a623aaSMatthew G. Knepley 409b0a623aaSMatthew G. Knepley .seealso: DMPlexCreateOverlap() 410b0a623aaSMatthew G. Knepley @*/ 411b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 412b0a623aaSMatthew G. Knepley { 413b0a623aaSMatthew G. Knepley MPI_Comm comm; 414b0a623aaSMatthew G. Knepley PetscSF sfPoint; 415b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 416b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 417b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 418b0a623aaSMatthew G. Knepley PetscMPIInt rank; 419b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 420b0a623aaSMatthew G. Knepley 421b0a623aaSMatthew G. Knepley PetscFunctionBegin; 422b0a623aaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 423b0a623aaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 424b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 425b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 426b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 427b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr); 428b0a623aaSMatthew G. Knepley ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr); 429b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr); 430b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr); 431b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);} 432b0a623aaSMatthew G. Knepley ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr); 433b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 434b0a623aaSMatthew G. Knepley ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr); 435b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr); 436b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(nedges, &remoterank);CHKERRQ(ierr); 437b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 438b0a623aaSMatthew G. Knepley ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 439b0a623aaSMatthew G. Knepley ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 440b0a623aaSMatthew G. Knepley ierr = PetscFree(myrank);CHKERRQ(ierr); 441b0a623aaSMatthew G. Knepley ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr); 442b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 443b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr); 444b0a623aaSMatthew G. Knepley ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr); 445b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 446b0a623aaSMatthew G. Knepley } 447b0a623aaSMatthew G. Knepley 448278397a0SMatthew G. Knepley /*@C 449b0a623aaSMatthew G. Knepley DMPlexCreateOverlap - Compute owner information for shared points. This basically gets two-sided for an SF. 450b0a623aaSMatthew G. Knepley 451b0a623aaSMatthew G. Knepley Collective on DM 452b0a623aaSMatthew G. Knepley 453b0a623aaSMatthew G. Knepley Input Parameters: 454b0a623aaSMatthew G. Knepley + dm - The DM 45524d039d7SMichael Lange . levels - Number of overlap levels 456b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 457b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 458b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 459b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 460b0a623aaSMatthew G. Knepley 461b0a623aaSMatthew G. Knepley Output Parameters: 462a9f1d5b2SMichael Lange + ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 463b0a623aaSMatthew G. Knepley 464b0a623aaSMatthew G. Knepley Level: developer 465b0a623aaSMatthew G. Knepley 4661fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute() 467b0a623aaSMatthew G. Knepley @*/ 468a9f1d5b2SMichael Lange PetscErrorCode DMPlexCreateOverlap(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 469b0a623aaSMatthew G. Knepley { 470e540f424SMichael Lange MPI_Comm comm; 471b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 472b0a623aaSMatthew G. Knepley PetscSF sfPoint, sfProc; 473b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 474b0a623aaSMatthew G. Knepley const PetscInt *local; 4751fd9873aSMichael Lange const PetscInt *nrank, *rrank; 476b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4771fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4789852e123SBarry Smith PetscMPIInt rank, size; 47926a7d390SMatthew G. Knepley PetscBool useCone, useClosure, flg; 480b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 481b0a623aaSMatthew G. Knepley 482b0a623aaSMatthew G. Knepley PetscFunctionBegin; 483e540f424SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 4849852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 485e540f424SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 486b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 487b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 488b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr); 489b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr); 490d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr); 491b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 492b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 493b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 494b0a623aaSMatthew G. Knepley 495df20756eSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr); 496b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);} 497b0a623aaSMatthew G. Knepley } 498b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr); 499b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr); 500b0a623aaSMatthew G. Knepley /* Handle roots */ 501b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 502b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 503b0a623aaSMatthew G. Knepley 504b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 505b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 506b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr); 507b0a623aaSMatthew G. Knepley if (neighbors) { 508b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr); 509b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 510b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 511b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 512b0a623aaSMatthew G. Knepley 513b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 514b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 515b0a623aaSMatthew G. Knepley } 516b0a623aaSMatthew G. Knepley } 517b0a623aaSMatthew G. Knepley } 518b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 519b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr); 520b0a623aaSMatthew G. Knepley if (!neighbors) continue; 521b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr); 522b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 523b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 524b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 525b0a623aaSMatthew G. Knepley 526b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 527b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 528b0a623aaSMatthew G. Knepley } 529b0a623aaSMatthew G. Knepley } 530b0a623aaSMatthew G. Knepley ierr = PetscFree(adj);CHKERRQ(ierr); 531b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr); 532b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr); 53324d039d7SMichael Lange /* Add additional overlap levels */ 534be200f8dSMichael Lange for (l = 1; l < levels; l++) { 535be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 536be200f8dSMichael Lange ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr); 537be200f8dSMichael Lange /* Add next level of point donations to the label */ 538be200f8dSMichael Lange ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr); 539be200f8dSMichael Lange } 54026a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 541*b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 54226a7d390SMatthew G. Knepley if (useCone || !useClosure) { 5435abbe4feSMichael Lange ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr); 54426a7d390SMatthew G. Knepley } 545c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr); 546e540f424SMichael Lange if (flg) { 547b0a623aaSMatthew G. Knepley ierr = DMLabelView(ovAdjByRank, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 548b0a623aaSMatthew G. Knepley } 54971a8c5fcSMichael Lange /* Make global process SF and invert sender to receiver label */ 55071a8c5fcSMichael Lange { 55171a8c5fcSMichael Lange /* Build a global process SF */ 55271a8c5fcSMichael Lange PetscSFNode *remoteProc; 5539852e123SBarry Smith ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr); 5549852e123SBarry Smith for (p = 0; p < size; ++p) { 55571a8c5fcSMichael Lange remoteProc[p].rank = p; 55671a8c5fcSMichael Lange remoteProc[p].index = rank; 55771a8c5fcSMichael Lange } 55871a8c5fcSMichael Lange ierr = PetscSFCreate(comm, &sfProc);CHKERRQ(ierr); 55971a8c5fcSMichael Lange ierr = PetscObjectSetName((PetscObject) sfProc, "Process SF");CHKERRQ(ierr); 5609852e123SBarry Smith ierr = PetscSFSetGraph(sfProc, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr); 56171a8c5fcSMichael Lange } 562d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr); 563a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, sfProc, *ovLabel);CHKERRQ(ierr); 564a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 565a9f1d5b2SMichael Lange for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 566e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 567a9f1d5b2SMichael Lange ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr); 568a9f1d5b2SMichael Lange ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr); 569e540f424SMichael Lange } 570e540f424SMichael Lange /* Clean up */ 5711fd9873aSMichael Lange ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr); 572b0a623aaSMatthew G. Knepley ierr = PetscSFDestroy(&sfProc);CHKERRQ(ierr); 573b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 574b0a623aaSMatthew G. Knepley } 57570034214SMatthew G. Knepley 57624cc2ca5SMatthew G. Knepley /*@C 57724cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 57824cc2ca5SMatthew G. Knepley 57924cc2ca5SMatthew G. Knepley Collective on DM 58024cc2ca5SMatthew G. Knepley 58124cc2ca5SMatthew G. Knepley Input Parameters: 58224cc2ca5SMatthew G. Knepley + dm - The DM 58324cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 58424cc2ca5SMatthew G. Knepley 58524cc2ca5SMatthew G. Knepley Output Parameters: 58624cc2ca5SMatthew G. Knepley + migrationSF - An SF that maps original points in old locations to points in new locations 58724cc2ca5SMatthew G. Knepley 58824cc2ca5SMatthew G. Knepley Level: developer 58924cc2ca5SMatthew G. Knepley 59024cc2ca5SMatthew G. Knepley .seealso: DMPlexCreateOverlap(), DMPlexDistribute() 59124cc2ca5SMatthew G. Knepley @*/ 59246f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 59346f9b1c3SMichael Lange { 59446f9b1c3SMichael Lange MPI_Comm comm; 5959852e123SBarry Smith PetscMPIInt rank, size; 59646f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 59746f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 59846f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 59946f9b1c3SMichael Lange PetscSFNode *iremote; 60046f9b1c3SMichael Lange PetscSF pointSF; 60146f9b1c3SMichael Lange const PetscInt *sharedLocal; 60246f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 60346f9b1c3SMichael Lange PetscErrorCode ierr; 60446f9b1c3SMichael Lange 60546f9b1c3SMichael Lange PetscFunctionBegin; 60646f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 60746f9b1c3SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 60846f9b1c3SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 6099852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 61046f9b1c3SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 61146f9b1c3SMichael Lange 61246f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 61346f9b1c3SMichael Lange ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr); 61446f9b1c3SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 61546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 61646f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 61746f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 61846f9b1c3SMichael Lange } 61946f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 62046f9b1c3SMichael Lange ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 62146f9b1c3SMichael Lange ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 62246f9b1c3SMichael Lange 62346f9b1c3SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 62446f9b1c3SMichael Lange ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr); 62546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 62646f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 62746f9b1c3SMichael Lange depthShift[dim] = 0; 62846f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 62946f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 63046f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 63146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 63246f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 63346f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 63446f9b1c3SMichael Lange } 63546f9b1c3SMichael Lange 63646f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 63746f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 63846f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 63909b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr); 64009b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr); 64146f9b1c3SMichael Lange /* First map local points to themselves */ 64246f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 64346f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 64446f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 64546f9b1c3SMichael Lange point = p + depthShift[d]; 64646f9b1c3SMichael Lange ilocal[point] = point; 64746f9b1c3SMichael Lange iremote[point].index = p; 64846f9b1c3SMichael Lange iremote[point].rank = rank; 64946f9b1c3SMichael Lange depthIdx[d]++; 65046f9b1c3SMichael Lange } 65146f9b1c3SMichael Lange } 65246f9b1c3SMichael Lange 65346f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 65446f9b1c3SMichael Lange ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr); 65546f9b1c3SMichael Lange ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr); 65646f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 65746f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 65846f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 65946f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 66046f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 66146f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 66246f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 66346f9b1c3SMichael Lange } 66446f9b1c3SMichael Lange } 66546f9b1c3SMichael Lange } 66646f9b1c3SMichael Lange 66746f9b1c3SMichael Lange /* Now add the incoming overlap points */ 66846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 66946f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 67046f9b1c3SMichael Lange ilocal[point] = point; 67146f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 67246f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 67346f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 67446f9b1c3SMichael Lange } 67515fff7beSMatthew G. Knepley ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 67646f9b1c3SMichael Lange 67746f9b1c3SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 67846f9b1c3SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr); 67946f9b1c3SMichael Lange ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr); 68046f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 68146f9b1c3SMichael Lange ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 68246f9b1c3SMichael Lange 68346f9b1c3SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 68470034214SMatthew G. Knepley PetscFunctionReturn(0); 68570034214SMatthew G. Knepley } 68670034214SMatthew G. Knepley 687a9f1d5b2SMichael Lange /*@ 688f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 689a9f1d5b2SMichael Lange 690a9f1d5b2SMichael Lange Input Parameter: 691a9f1d5b2SMichael Lange + dm - The DM 692a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 693a9f1d5b2SMichael Lange 694a9f1d5b2SMichael Lange Output Parameter: 695a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 696a9f1d5b2SMichael Lange 697a9f1d5b2SMichael Lange Level: developer 698a9f1d5b2SMichael Lange 699a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap() 700a9f1d5b2SMichael Lange @*/ 701a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 702a9f1d5b2SMichael Lange { 703a9f1d5b2SMichael Lange MPI_Comm comm; 7049852e123SBarry Smith PetscMPIInt rank, size; 7057fab53ddSMatthew G. Knepley PetscInt d, ldepth, depth, p, pStart, pEnd, nroots, nleaves; 706a9f1d5b2SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 707a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 708f0e73a3dSToby Isaac PetscInt hybEnd[4]; 709a9f1d5b2SMichael Lange const PetscSFNode *iremote; 710a9f1d5b2SMichael Lange PetscErrorCode ierr; 711a9f1d5b2SMichael Lange 712a9f1d5b2SMichael Lange PetscFunctionBegin; 713a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 714a9f1d5b2SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 715a9f1d5b2SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 7169852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 7177fab53ddSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr); 718b2566f29SBarry Smith ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 7197fab53ddSMatthew G. Knepley if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth); 720a9f1d5b2SMichael Lange 721a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 722a9f1d5b2SMichael Lange ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr); 723a9f1d5b2SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 724f0e73a3dSToby Isaac ierr = DMPlexGetHybridBounds(dm,&hybEnd[depth],&hybEnd[depth-1],&hybEnd[1],&hybEnd[0]);CHKERRQ(ierr); 7257fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 726a9f1d5b2SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 727f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 728f0e73a3dSToby Isaac if (hybEnd[d] >= 0 && p >= hybEnd[d]) { /* put in a separate value for hybrid points */ 729f0e73a3dSToby Isaac pointDepths[p] = 2 * d; 730f0e73a3dSToby Isaac } else { 731f0e73a3dSToby Isaac pointDepths[p] = 2 * d + 1; 732f0e73a3dSToby Isaac } 733f0e73a3dSToby Isaac } 734a9f1d5b2SMichael Lange } 7357fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1; 736a9f1d5b2SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 737a9f1d5b2SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 738a9f1d5b2SMichael Lange /* Count recevied points in each stratum and compute the internal strata shift */ 739f0e73a3dSToby Isaac ierr = PetscMalloc3(2*(depth+1), &depthRecv, 2*(depth+1), &depthShift, 2*(depth+1), &depthIdx);CHKERRQ(ierr); 740f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) depthRecv[d] = 0; 7417fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++; 742f0e73a3dSToby Isaac depthShift[2*depth+1] = 0; 743f0e73a3dSToby Isaac for (d = 0; d < 2*depth+1; ++d) depthShift[d] = depthRecv[2 * depth + 1]; 744f0e73a3dSToby Isaac for (d = 0; d < 2*depth; ++d) depthShift[d] += depthRecv[2 * depth]; 745f0e73a3dSToby Isaac depthShift[0] += depthRecv[1]; 746f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[1]; 747f0e73a3dSToby Isaac for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[0]; 748f0e73a3dSToby Isaac for (d = 2 * depth-1; d > 2; --d) { 749f0e73a3dSToby Isaac PetscInt e; 750f0e73a3dSToby Isaac 751f0e73a3dSToby Isaac for (e = d -1; e > 1; --e) depthShift[e] += depthRecv[d]; 752f0e73a3dSToby Isaac } 753f0e73a3dSToby Isaac for (d = 0; d < 2*(depth+1); ++d) {depthIdx[d] = 0;} 754a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 755a9f1d5b2SMichael Lange ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 7567fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 7577fab53ddSMatthew G. Knepley const PetscInt dep = remoteDepths[p]; 7587fab53ddSMatthew G. Knepley 7597fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 7607fab53ddSMatthew G. Knepley depthIdx[dep]++; 761a9f1d5b2SMichael Lange } 762a9f1d5b2SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 763a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr); 764a9f1d5b2SMichael Lange ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr); 765a9f1d5b2SMichael Lange ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 766a9f1d5b2SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 767a9f1d5b2SMichael Lange PetscFunctionReturn(0); 768a9f1d5b2SMichael Lange } 769a9f1d5b2SMichael Lange 77070034214SMatthew G. Knepley /*@ 77170034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 77270034214SMatthew G. Knepley 77370034214SMatthew G. Knepley Collective on DM 77470034214SMatthew G. Knepley 77570034214SMatthew G. Knepley Input Parameters: 77670034214SMatthew G. Knepley + dm - The DMPlex object 77770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 77870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 77970034214SMatthew G. Knepley - originalVec - The existing data 78070034214SMatthew G. Knepley 78170034214SMatthew G. Knepley Output Parameters: 78270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 78370034214SMatthew G. Knepley - newVec - The new data 78470034214SMatthew G. Knepley 78570034214SMatthew G. Knepley Level: developer 78670034214SMatthew G. Knepley 78770034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData() 78870034214SMatthew G. Knepley @*/ 78970034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 79070034214SMatthew G. Knepley { 79170034214SMatthew G. Knepley PetscSF fieldSF; 79270034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 79370034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 79470034214SMatthew G. Knepley PetscErrorCode ierr; 79570034214SMatthew G. Knepley 79670034214SMatthew G. Knepley PetscFunctionBegin; 79770034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 79870034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 79970034214SMatthew G. Knepley 80070034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 80170034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 80270034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 80370034214SMatthew G. Knepley 80470034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 80570034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 80670034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8078a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 80870034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 80970034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 81070034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 81170034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 81270034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 81370034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 81470034214SMatthew G. Knepley PetscFunctionReturn(0); 81570034214SMatthew G. Knepley } 81670034214SMatthew G. Knepley 81770034214SMatthew G. Knepley /*@ 81870034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 81970034214SMatthew G. Knepley 82070034214SMatthew G. Knepley Collective on DM 82170034214SMatthew G. Knepley 82270034214SMatthew G. Knepley Input Parameters: 82370034214SMatthew G. Knepley + dm - The DMPlex object 82470034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 82570034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 82670034214SMatthew G. Knepley - originalIS - The existing data 82770034214SMatthew G. Knepley 82870034214SMatthew G. Knepley Output Parameters: 82970034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 83070034214SMatthew G. Knepley - newIS - The new data 83170034214SMatthew G. Knepley 83270034214SMatthew G. Knepley Level: developer 83370034214SMatthew G. Knepley 83470034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData() 83570034214SMatthew G. Knepley @*/ 83670034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 83770034214SMatthew G. Knepley { 83870034214SMatthew G. Knepley PetscSF fieldSF; 83970034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 84070034214SMatthew G. Knepley const PetscInt *originalValues; 84170034214SMatthew G. Knepley PetscErrorCode ierr; 84270034214SMatthew G. Knepley 84370034214SMatthew G. Knepley PetscFunctionBegin; 84470034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 84570034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 84670034214SMatthew G. Knepley 84770034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 848854ce69bSBarry Smith ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr); 84970034214SMatthew G. Knepley 85070034214SMatthew G. Knepley ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr); 85170034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8528a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 853aaf8c182SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 854aaf8c182SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 85570034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 85670034214SMatthew G. Knepley ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr); 85770034214SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr); 85870034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 85970034214SMatthew G. Knepley PetscFunctionReturn(0); 86070034214SMatthew G. Knepley } 86170034214SMatthew G. Knepley 86270034214SMatthew G. Knepley /*@ 86370034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 86470034214SMatthew G. Knepley 86570034214SMatthew G. Knepley Collective on DM 86670034214SMatthew G. Knepley 86770034214SMatthew G. Knepley Input Parameters: 86870034214SMatthew G. Knepley + dm - The DMPlex object 86970034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 87070034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 87170034214SMatthew G. Knepley . datatype - The type of data 87270034214SMatthew G. Knepley - originalData - The existing data 87370034214SMatthew G. Knepley 87470034214SMatthew G. Knepley Output Parameters: 87570034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 87670034214SMatthew G. Knepley - newData - The new data 87770034214SMatthew G. Knepley 87870034214SMatthew G. Knepley Level: developer 87970034214SMatthew G. Knepley 88070034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 88170034214SMatthew G. Knepley @*/ 88270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 88370034214SMatthew G. Knepley { 88470034214SMatthew G. Knepley PetscSF fieldSF; 88570034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 88670034214SMatthew G. Knepley PetscMPIInt dataSize; 88770034214SMatthew G. Knepley PetscErrorCode ierr; 88870034214SMatthew G. Knepley 88970034214SMatthew G. Knepley PetscFunctionBegin; 89070034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 89170034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 89270034214SMatthew G. Knepley 89370034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 89470034214SMatthew G. Knepley ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr); 89570034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 89670034214SMatthew G. Knepley 89770034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8988a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 89970034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 90070034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 90170034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 90270034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 90370034214SMatthew G. Knepley PetscFunctionReturn(0); 90470034214SMatthew G. Knepley } 90570034214SMatthew G. Knepley 90624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 907cc71bff1SMichael Lange { 908cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 909cc71bff1SMichael Lange MPI_Comm comm; 910cc71bff1SMichael Lange PetscSF coneSF; 911cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 912ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 913cc71bff1SMichael Lange PetscBool flg; 914cc71bff1SMichael Lange PetscErrorCode ierr; 915cc71bff1SMichael Lange 916cc71bff1SMichael Lange PetscFunctionBegin; 917cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9180c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 919cc71bff1SMichael Lange 9200c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 921cc71bff1SMichael Lange /* Distribute cone section */ 922cc71bff1SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 923cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 924cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr); 925cc71bff1SMichael Lange ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 926cc71bff1SMichael Lange ierr = DMSetUp(dmParallel);CHKERRQ(ierr); 927cc71bff1SMichael Lange { 928cc71bff1SMichael Lange PetscInt pStart, pEnd, p; 929cc71bff1SMichael Lange 930cc71bff1SMichael Lange ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 931cc71bff1SMichael Lange for (p = pStart; p < pEnd; ++p) { 932cc71bff1SMichael Lange PetscInt coneSize; 933cc71bff1SMichael Lange ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 934cc71bff1SMichael Lange pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 935cc71bff1SMichael Lange } 936cc71bff1SMichael Lange } 937cc71bff1SMichael Lange /* Communicate and renumber cones */ 938cc71bff1SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 9398a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 940cc71bff1SMichael Lange ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 941ac04eaf7SToby Isaac if (original) { 942ac04eaf7SToby Isaac PetscInt numCones; 943ac04eaf7SToby Isaac 944367003a6SStefano Zampini ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); 945367003a6SStefano Zampini ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr); 946ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr); 947367003a6SStefano Zampini } else { 948ac04eaf7SToby Isaac globCones = cones; 949ac04eaf7SToby Isaac } 950cc71bff1SMichael Lange ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr); 951ac04eaf7SToby Isaac ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 952ac04eaf7SToby Isaac ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 953ac04eaf7SToby Isaac if (original) { 954ac04eaf7SToby Isaac ierr = PetscFree(globCones);CHKERRQ(ierr); 955ac04eaf7SToby Isaac } 956cc71bff1SMichael Lange ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 957cc71bff1SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 95862795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 9593533c52bSMatthew G. Knepley { 9603533c52bSMatthew G. Knepley PetscInt p; 9613533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 9623533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 963367003a6SStefano Zampini if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);} 9643533c52bSMatthew G. Knepley } 9653533c52bSMatthew G. Knepley if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 9663533c52bSMatthew G. Knepley } 9673533c52bSMatthew G. Knepley #endif 968c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 969cc71bff1SMichael Lange if (flg) { 970cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 971cc71bff1SMichael Lange ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 972cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 973cc71bff1SMichael Lange ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 974cc71bff1SMichael Lange ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 975cc71bff1SMichael Lange } 976cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 977cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr); 978cc71bff1SMichael Lange ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 979cc71bff1SMichael Lange ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 980cc71bff1SMichael Lange ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 981cc71bff1SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 982eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 983cc71bff1SMichael Lange { 984cc71bff1SMichael Lange PetscInt pStart, pEnd; 985cc71bff1SMichael Lange 986cc71bff1SMichael Lange ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 987cc71bff1SMichael Lange ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 988cc71bff1SMichael Lange } 989cc71bff1SMichael Lange ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr); 990cc71bff1SMichael Lange ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr); 9911cf84007SMatthew G. Knepley { 9921cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 9931cf84007SMatthew G. Knepley 994*b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 995*b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 9961cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 9971cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 9981cf84007SMatthew G. Knepley } 999cc71bff1SMichael Lange PetscFunctionReturn(0); 1000cc71bff1SMichael Lange } 1001cc71bff1SMichael Lange 100224cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 10030df0e737SMichael Lange { 10040df0e737SMichael Lange MPI_Comm comm; 10050df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 10060df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 10070df0e737SMichael Lange PetscInt bs; 100890b157c4SStefano Zampini PetscBool isper; 10090df0e737SMichael Lange const char *name; 10100df0e737SMichael Lange const PetscReal *maxCell, *L; 10115dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 10120df0e737SMichael Lange PetscErrorCode ierr; 10130df0e737SMichael Lange 10140df0e737SMichael Lange PetscFunctionBegin; 10150df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10160c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10170df0e737SMichael Lange 10180df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10190df0e737SMichael Lange ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 10200df0e737SMichael Lange ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr); 10210df0e737SMichael Lange ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 10220df0e737SMichael Lange if (originalCoordinates) { 10238b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 10240df0e737SMichael Lange ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 10250df0e737SMichael Lange ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 10260df0e737SMichael Lange 10270df0e737SMichael Lange ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 10280df0e737SMichael Lange ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr); 10290df0e737SMichael Lange ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 10300df0e737SMichael Lange ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 10310df0e737SMichael Lange ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 10320df0e737SMichael Lange } 103390b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 103490b157c4SStefano Zampini ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr); 10350df0e737SMichael Lange PetscFunctionReturn(0); 10360df0e737SMichael Lange } 10370df0e737SMichael Lange 1038d995df53SMatthew G. Knepley /* Here we are assuming that process 0 always has everything */ 103924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 10400df0e737SMichael Lange { 1041df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 10420df0e737SMichael Lange MPI_Comm comm; 10437980c9d4SMatthew G. Knepley DMLabel depthLabel; 10440df0e737SMichael Lange PetscMPIInt rank; 10457980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1046df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1047df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 10480df0e737SMichael Lange PetscErrorCode ierr; 10490df0e737SMichael Lange 10500df0e737SMichael Lange PetscFunctionBegin; 10510df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10520c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10530c86c063SLisandro Dalcin 10540df0e737SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10550df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10560df0e737SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 10570df0e737SMichael Lange 1058df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 10597980c9d4SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 10607980c9d4SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 1061d67d17b1SMatthew G. Knepley if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);} 1062df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 1063b2566f29SBarry Smith ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr); 1064df0420ecSMatthew G. Knepley if (sendDepth) { 10657980c9d4SMatthew G. Knepley ierr = DMRemoveLabel(dmParallel, "depth", &depthLabel);CHKERRQ(ierr); 10667980c9d4SMatthew G. Knepley ierr = DMLabelDestroy(&depthLabel);CHKERRQ(ierr); 1067df0420ecSMatthew G. Knepley } 1068d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 1069c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr); 1070d995df53SMatthew G. Knepley numLabels = numLocalLabels; 10710df0e737SMichael Lange ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr); 1072627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 1073bdd2d751SMichael Lange for (l = numLabels-1; l >= 0; --l) { 1074bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 107583e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1076d67d17b1SMatthew G. Knepley const char *name = NULL; 10770df0e737SMichael Lange 1078d67d17b1SMatthew G. Knepley if (hasLabels) { 1079d67d17b1SMatthew G. Knepley ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr); 10800df0e737SMichael Lange /* Skip "depth" because it is recreated */ 1081d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr); 1082d67d17b1SMatthew G. Knepley ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr); 1083d67d17b1SMatthew G. Knepley } 108483e10cb3SLisandro Dalcin ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr); 108583e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 1086bdd2d751SMichael Lange ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr); 108783e10cb3SLisandro Dalcin if (isDepth) { 10887980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 10897980c9d4SMatthew G. Knepley PetscInt gdepth; 10907980c9d4SMatthew G. Knepley 10917980c9d4SMatthew G. Knepley ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 10927980c9d4SMatthew G. Knepley if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth); 10937980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 10947980c9d4SMatthew G. Knepley PetscBool has; 10957980c9d4SMatthew G. Knepley 10967980c9d4SMatthew G. Knepley ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr); 109783e10cb3SLisandro Dalcin if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);} 10987980c9d4SMatthew G. Knepley } 10997980c9d4SMatthew G. Knepley } 1100c58f1c22SToby Isaac ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr); 110183e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 1102d67d17b1SMatthew G. Knepley if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);} 110383e10cb3SLisandro Dalcin ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr); 1104d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr); 1105d67d17b1SMatthew G. Knepley ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr); 11060df0e737SMichael Lange } 11070df0e737SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 11080df0e737SMichael Lange PetscFunctionReturn(0); 11090df0e737SMichael Lange } 11100df0e737SMichael Lange 111124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel) 11129734c634SMichael Lange { 11139734c634SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 11149734c634SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1115f0e73a3dSToby Isaac PetscBool *isHybrid, *isHybridParallel; 1116f0e73a3dSToby Isaac PetscInt dim, depth, d; 1117f0e73a3dSToby Isaac PetscInt pStart, pEnd, pStartP, pEndP; 11189734c634SMichael Lange PetscErrorCode ierr; 11199734c634SMichael Lange 11209734c634SMichael Lange PetscFunctionBegin; 11219734c634SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11220c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 11239734c634SMichael Lange 11249734c634SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 11259734c634SMichael Lange ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1126f0e73a3dSToby Isaac ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr); 1127f0e73a3dSToby Isaac ierr = DMPlexGetChart(dmParallel,&pStartP,&pEndP);CHKERRQ(ierr); 1128f0e73a3dSToby Isaac ierr = PetscCalloc2(pEnd-pStart,&isHybrid,pEndP-pStartP,&isHybridParallel);CHKERRQ(ierr); 1129f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1130f0e73a3dSToby Isaac PetscInt hybridMax = (depth == 1 && d == 1) ? mesh->hybridPointMax[dim] : mesh->hybridPointMax[d]; 11319734c634SMichael Lange 1132f0e73a3dSToby Isaac if (hybridMax >= 0) { 1133f0e73a3dSToby Isaac PetscInt sStart, sEnd, p; 11349734c634SMichael Lange 1135f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dm,d,&sStart,&sEnd);CHKERRQ(ierr); 1136f0e73a3dSToby Isaac for (p = hybridMax; p < sEnd; p++) isHybrid[p-pStart] = PETSC_TRUE; 11379734c634SMichael Lange } 11389734c634SMichael Lange } 1139f0e73a3dSToby Isaac ierr = PetscSFBcastBegin(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1140f0e73a3dSToby Isaac ierr = PetscSFBcastEnd(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr); 1141f0e73a3dSToby Isaac for (d = 0; d <= dim; d++) pmesh->hybridPointMax[d] = -1; 1142f0e73a3dSToby Isaac for (d = 0; d <= depth; d++) { 1143f0e73a3dSToby Isaac PetscInt sStart, sEnd, p, dd; 1144f0e73a3dSToby Isaac 1145f0e73a3dSToby Isaac ierr = DMPlexGetDepthStratum(dmParallel,d,&sStart,&sEnd);CHKERRQ(ierr); 1146f0e73a3dSToby Isaac dd = (depth == 1 && d == 1) ? dim : d; 1147f0e73a3dSToby Isaac for (p = sStart; p < sEnd; p++) { 1148f0e73a3dSToby Isaac if (isHybridParallel[p-pStartP]) { 1149f0e73a3dSToby Isaac pmesh->hybridPointMax[dd] = p; 1150f0e73a3dSToby Isaac break; 1151f0e73a3dSToby Isaac } 1152f0e73a3dSToby Isaac } 1153f0e73a3dSToby Isaac } 1154f0e73a3dSToby Isaac ierr = PetscFree2(isHybrid,isHybridParallel);CHKERRQ(ierr); 11559734c634SMichael Lange PetscFunctionReturn(0); 11569734c634SMichael Lange } 11570df0e737SMichael Lange 115824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1159a6f36705SMichael Lange { 116015078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 116115078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1162a6f36705SMichael Lange MPI_Comm comm; 1163a6f36705SMichael Lange DM refTree; 1164a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1165a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1166a6f36705SMichael Lange PetscBool flg; 1167a6f36705SMichael Lange PetscErrorCode ierr; 1168a6f36705SMichael Lange 1169a6f36705SMichael Lange PetscFunctionBegin; 1170a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11710c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 1172a6f36705SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1173a6f36705SMichael Lange 1174a6f36705SMichael Lange /* Set up tree */ 1175a6f36705SMichael Lange ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 1176a6f36705SMichael Lange ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr); 1177a6f36705SMichael Lange ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr); 1178a6f36705SMichael Lange if (origParentSection) { 1179a6f36705SMichael Lange PetscInt pStart, pEnd; 118008633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1181a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1182a6f36705SMichael Lange PetscSF parentSF; 1183a6f36705SMichael Lange 1184a6f36705SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 1185a6f36705SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr); 1186a6f36705SMichael Lange ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr); 1187a6f36705SMichael Lange ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr); 1188a6f36705SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr); 11898a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr); 1190a6f36705SMichael Lange ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr); 1191a6f36705SMichael Lange ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr); 119208633170SToby Isaac if (original) { 119308633170SToby Isaac PetscInt numParents; 119408633170SToby Isaac 119508633170SToby Isaac ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr); 119608633170SToby Isaac ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr); 119708633170SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr); 119808633170SToby Isaac } 119908633170SToby Isaac else { 120008633170SToby Isaac globParents = origParents; 120108633170SToby Isaac } 120208633170SToby Isaac ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 120308633170SToby Isaac ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 120408633170SToby Isaac if (original) { 120508633170SToby Isaac ierr = PetscFree(globParents);CHKERRQ(ierr); 120608633170SToby Isaac } 1207a6f36705SMichael Lange ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1208a6f36705SMichael Lange ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1209a6f36705SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr); 121062795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG) 12114a54e071SToby Isaac { 12124a54e071SToby Isaac PetscInt p; 12134a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 12144a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 12154a54e071SToby Isaac if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 12164a54e071SToby Isaac } 12174a54e071SToby Isaac if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 12184a54e071SToby Isaac } 12194a54e071SToby Isaac #endif 1220c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr); 1221a6f36705SMichael Lange if (flg) { 1222a6f36705SMichael Lange ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr); 1223a6f36705SMichael Lange ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1224a6f36705SMichael Lange ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr); 1225a6f36705SMichael Lange ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1226a6f36705SMichael Lange ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr); 1227a6f36705SMichael Lange } 1228a6f36705SMichael Lange ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr); 1229a6f36705SMichael Lange ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr); 1230a6f36705SMichael Lange ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr); 1231a6f36705SMichael Lange ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr); 1232a6f36705SMichael Lange } 123315078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1234a6f36705SMichael Lange PetscFunctionReturn(0); 1235a6f36705SMichael Lange } 12360df0e737SMichael Lange 123724cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 12384eca1733SMichael Lange { 12399852e123SBarry Smith PetscMPIInt rank, size; 12404eca1733SMichael Lange MPI_Comm comm; 12414eca1733SMichael Lange PetscErrorCode ierr; 12424eca1733SMichael Lange 12434eca1733SMichael Lange PetscFunctionBegin; 12444eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12450c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12464eca1733SMichael Lange 12474eca1733SMichael Lange /* Create point SF for parallel mesh */ 12484eca1733SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12494eca1733SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 12504eca1733SMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 12519852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 12524eca1733SMichael Lange { 12534eca1733SMichael Lange const PetscInt *leaves; 12544eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 12554eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 12564eca1733SMichael Lange PetscInt pStart, pEnd; 12574eca1733SMichael Lange 12584eca1733SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 12594eca1733SMichael Lange ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 12604eca1733SMichael Lange ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 12614eca1733SMichael Lange for (p=0; p<numRoots; p++) { 12624eca1733SMichael Lange rowners[p].rank = -1; 12634eca1733SMichael Lange rowners[p].index = -1; 12644eca1733SMichael Lange } 12654eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12664eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12674eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12684eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 12694eca1733SMichael Lange lowners[p].rank = rank; 12704eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 12714eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 12724eca1733SMichael Lange lowners[p].rank = -2; 12734eca1733SMichael Lange lowners[p].index = -2; 12744eca1733SMichael Lange } 12754eca1733SMichael Lange } 12764eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 12774eca1733SMichael Lange rowners[p].rank = -3; 12784eca1733SMichael Lange rowners[p].index = -3; 12794eca1733SMichael Lange } 12804eca1733SMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12814eca1733SMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12824eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12834eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12844eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12854eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 12864eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 12874eca1733SMichael Lange } 12884eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 12894eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 12904eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 12914eca1733SMichael Lange if (lowners[p].rank != rank) { 12924eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 12934eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 12944eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 12954eca1733SMichael Lange ++gp; 12964eca1733SMichael Lange } 12974eca1733SMichael Lange } 12984eca1733SMichael Lange ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 12994eca1733SMichael Lange ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 13004eca1733SMichael Lange ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr); 13014eca1733SMichael Lange } 13021cf84007SMatthew G. Knepley { 13031cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 13041cf84007SMatthew G. Knepley 1305*b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1306*b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 13071cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 13081cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 13091cf84007SMatthew G. Knepley } 13104eca1733SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 13114eca1733SMichael Lange PetscFunctionReturn(0); 13124eca1733SMichael Lange } 13134eca1733SMichael Lange 131498ba2d7fSLawrence Mitchell /*@ 131598ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 131698ba2d7fSLawrence Mitchell 131798ba2d7fSLawrence Mitchell Input Parameters: 131898ba2d7fSLawrence Mitchell + dm - The DMPlex object 131998ba2d7fSLawrence Mitchell - flg - Balance the partition? 132098ba2d7fSLawrence Mitchell 132198ba2d7fSLawrence Mitchell Level: intermediate 132298ba2d7fSLawrence Mitchell 132398ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance() 132498ba2d7fSLawrence Mitchell @*/ 132598ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 132698ba2d7fSLawrence Mitchell { 132798ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 132898ba2d7fSLawrence Mitchell 132998ba2d7fSLawrence Mitchell PetscFunctionBegin; 133098ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 133198ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 133298ba2d7fSLawrence Mitchell } 133398ba2d7fSLawrence Mitchell 133498ba2d7fSLawrence Mitchell /*@ 133598ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 133698ba2d7fSLawrence Mitchell 133798ba2d7fSLawrence Mitchell Input Parameter: 133898ba2d7fSLawrence Mitchell + dm - The DMPlex object 133998ba2d7fSLawrence Mitchell 134098ba2d7fSLawrence Mitchell Output Parameter: 134198ba2d7fSLawrence Mitchell + flg - Balance the partition? 134298ba2d7fSLawrence Mitchell 134398ba2d7fSLawrence Mitchell Level: intermediate 134498ba2d7fSLawrence Mitchell 134598ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance() 134698ba2d7fSLawrence Mitchell @*/ 134798ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 134898ba2d7fSLawrence Mitchell { 134998ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 135098ba2d7fSLawrence Mitchell 135198ba2d7fSLawrence Mitchell PetscFunctionBegin; 135298ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 135398ba2d7fSLawrence Mitchell PetscValidIntPointer(flg, 2); 135498ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 135598ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 135698ba2d7fSLawrence Mitchell } 135798ba2d7fSLawrence Mitchell 1358f5bf2dbfSMichael Lange /*@C 1359f5bf2dbfSMichael Lange DMPlexDerivePointSF - Build a point SF from an SF describing a point migration 1360f5bf2dbfSMichael Lange 1361f5bf2dbfSMichael Lange Input Parameter: 1362f5bf2dbfSMichael Lange + dm - The source DMPlex object 1363f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 13641627f6ccSMichael Lange . ownership - Flag causing a vote to determine point ownership 1365f5bf2dbfSMichael Lange 1366f5bf2dbfSMichael Lange Output Parameter: 1367f5bf2dbfSMichael Lange - pointSF - The star forest describing the point overlap in the remapped DM 1368f5bf2dbfSMichael Lange 1369f5bf2dbfSMichael Lange Level: developer 1370f5bf2dbfSMichael Lange 1371f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 1372f5bf2dbfSMichael Lange @*/ 1373f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1374f5bf2dbfSMichael Lange { 137523193802SMatthew G. Knepley PetscMPIInt rank, size; 13761627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1377f5bf2dbfSMichael Lange PetscInt *pointLocal; 1378f5bf2dbfSMichael Lange const PetscInt *leaves; 1379f5bf2dbfSMichael Lange const PetscSFNode *roots; 1380f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 138123193802SMatthew G. Knepley Vec shifts; 1382cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 138323193802SMatthew G. Knepley const PetscScalar *shift = NULL; 138423193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 138598ba2d7fSLawrence Mitchell PetscBool balance; 1386f5bf2dbfSMichael Lange PetscErrorCode ierr; 1387f5bf2dbfSMichael Lange 1388f5bf2dbfSMichael Lange PetscFunctionBegin; 1389f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1390f5bf2dbfSMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 1391ab0bc224SMatthew G. Knepley ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 1392f5bf2dbfSMichael Lange 139398ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 1394f5bf2dbfSMichael Lange ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr); 1395f5bf2dbfSMichael Lange ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr); 1396f5bf2dbfSMichael Lange if (ownership) { 139723193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 139898ba2d7fSLawrence Mitchell if (balance) { 139923193802SMatthew G. Knepley PetscRandom r; 140023193802SMatthew G. Knepley 140123193802SMatthew G. Knepley ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr); 1402cae3e4f3SLawrence Mitchell ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr); 140323193802SMatthew G. Knepley ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr); 140423193802SMatthew G. Knepley ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr); 140523193802SMatthew G. Knepley ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr); 140623193802SMatthew G. Knepley ierr = VecSetRandom(shifts, r);CHKERRQ(ierr); 140723193802SMatthew G. Knepley ierr = PetscRandomDestroy(&r);CHKERRQ(ierr); 140823193802SMatthew G. Knepley ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr); 140923193802SMatthew G. Knepley } 141023193802SMatthew G. Knepley 141123193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1412f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 141323193802SMatthew G. Knepley if (shiftDebug) { 1414e7bcd635SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr); 141523193802SMatthew G. Knepley } 1416f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1417e7bcd635SMatthew G. Knepley leafNodes[p].rank = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 141843f7d02bSMichael Lange leafNodes[p].index = p; 1419f5bf2dbfSMichael Lange } 1420f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 14211627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1422f5bf2dbfSMichael Lange rootNodes[p].rank = -3; 1423f5bf2dbfSMichael Lange rootNodes[p].index = -3; 1424f5bf2dbfSMichael Lange } 1425f5bf2dbfSMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 1426f5bf2dbfSMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr); 142798ba2d7fSLawrence Mitchell if (balance) { 1428c091126eSLawrence Mitchell /* We've voted, now we need to get the rank. When we're balancing the partition, the "rank" in rootNotes is not 1429c091126eSLawrence Mitchell * the rank but rather (rank + random)%size. So we do another reduction, voting the same way, but sending the 1430c091126eSLawrence Mitchell * rank instead of the index. */ 1431c091126eSLawrence Mitchell PetscSFNode *rootRanks = NULL; 1432c091126eSLawrence Mitchell ierr = PetscMalloc1(nroots, &rootRanks);CHKERRQ(ierr); 1433c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1434c091126eSLawrence Mitchell rootRanks[p].rank = -3; 1435c091126eSLawrence Mitchell rootRanks[p].index = -3; 1436c091126eSLawrence Mitchell } 1437c091126eSLawrence Mitchell for (p = 0; p < nleaves; p++) leafNodes[p].index = rank; 1438c091126eSLawrence Mitchell ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr); 1439c091126eSLawrence Mitchell ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr); 1440c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) rootNodes[p].rank = rootRanks[p].index; 1441c091126eSLawrence Mitchell ierr = PetscFree(rootRanks);CHKERRQ(ierr); 1442c091126eSLawrence Mitchell } 1443f5bf2dbfSMichael Lange } else { 1444f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1445f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1446f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1447f5bf2dbfSMichael Lange }; 1448f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1449f5bf2dbfSMichael Lange /* Write new local id into old location */ 1450f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 14516462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1452f5bf2dbfSMichael Lange } 1453f5bf2dbfSMichael Lange } 1454f5bf2dbfSMichael Lange } 1455f5bf2dbfSMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1456f5bf2dbfSMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1457f5bf2dbfSMichael Lange 145823193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1459b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 146023193802SMatthew G. Knepley } 14611627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr); 14621627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr); 1463f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1464b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 1465f5bf2dbfSMichael Lange pointLocal[idx] = p; 1466f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1467f5bf2dbfSMichael Lange idx++; 1468f5bf2dbfSMichael Lange } 1469f5bf2dbfSMichael Lange } 147023193802SMatthew G. Knepley if (shift) { 147123193802SMatthew G. Knepley ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr); 147223193802SMatthew G. Knepley ierr = VecDestroy(&shifts);CHKERRQ(ierr); 147323193802SMatthew G. Knepley } 147423193802SMatthew G. Knepley if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);} 1475f5bf2dbfSMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr); 14761627f6ccSMichael Lange ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr); 1477f5bf2dbfSMichael Lange ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 1478f5bf2dbfSMichael Lange ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr); 1479f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1480f5bf2dbfSMichael Lange } 1481f5bf2dbfSMichael Lange 148215078cd4SMichael Lange /*@C 148315078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 148415078cd4SMichael Lange 148583655b49SVáclav Hapla Collective on DM and PetscSF 148683655b49SVáclav Hapla 148715078cd4SMichael Lange Input Parameter: 148815078cd4SMichael Lange + dm - The source DMPlex object 14891627f6ccSMichael Lange . sf - The star forest communication context describing the migration pattern 149015078cd4SMichael Lange 149115078cd4SMichael Lange Output Parameter: 149215078cd4SMichael Lange - targetDM - The target DMPlex object 149315078cd4SMichael Lange 1494b9f40539SMichael Lange Level: intermediate 149515078cd4SMichael Lange 149615078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 149715078cd4SMichael Lange @*/ 1498b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 149915078cd4SMichael Lange { 1500b9f40539SMichael Lange MPI_Comm comm; 1501cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1502b9f40539SMichael Lange PetscSF sfPoint; 150315078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1504ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1505b9f40539SMichael Lange PetscBool flg; 150615078cd4SMichael Lange PetscErrorCode ierr; 150715078cd4SMichael Lange 150815078cd4SMichael Lange PetscFunctionBegin; 150915078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15101b858b30SMichael Lange ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 1511b9f40539SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 151215078cd4SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 151315078cd4SMichael Lange ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr); 1514cc1750acSStefano Zampini ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 1515cc1750acSStefano Zampini ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr); 151615078cd4SMichael Lange 1517bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 1518b9f40539SMichael Lange ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 1519b9f40539SMichael Lange ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 1520bfb0467fSMichael Lange if (nroots >= 0) { 1521b9f40539SMichael Lange IS isOriginal; 1522ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1523ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1524367003a6SStefano Zampini 1525b9f40539SMichael Lange /* Get the original point numbering */ 1526b9f40539SMichael Lange ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr); 1527b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal);CHKERRQ(ierr); 1528b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr); 1529b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1530b9f40539SMichael Lange /* Convert to positive global numbers */ 1531b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1532b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 1533b9f40539SMichael Lange ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 1534b9f40539SMichael Lange ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr); 1535b9f40539SMichael Lange ierr = PetscSFBcastBegin(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr); 1536b9f40539SMichael Lange ierr = PetscSFBcastEnd(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr); 1537b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, (const PetscInt*) numbering_new, PETSC_OWN_POINTER, <ogMigration);CHKERRQ(ierr); 1538b9f40539SMichael Lange ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1539b9f40539SMichael Lange ierr = ISDestroy(&isOriginal);CHKERRQ(ierr); 154015078cd4SMichael Lange } else { 1541bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 154215078cd4SMichael Lange ierr = ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration);CHKERRQ(ierr); 154315078cd4SMichael Lange } 1544c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 1545b9f40539SMichael Lange if (flg) { 1546b9f40539SMichael Lange ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr); 1547b9f40539SMichael Lange ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr); 1548b9f40539SMichael Lange } 154915078cd4SMichael Lange /* Migrate DM data to target DM */ 1550ac04eaf7SToby Isaac ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 155115078cd4SMichael Lange ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr); 15520dc1530dSSander Arens ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr); 155315078cd4SMichael Lange ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr); 155408633170SToby Isaac ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 1555ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingDestroy(<ogOriginal);CHKERRQ(ierr); 1556302440fdSBarry Smith ierr = ISLocalToGlobalMappingDestroy(<ogMigration);CHKERRQ(ierr); 15571b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 155815078cd4SMichael Lange PetscFunctionReturn(0); 155915078cd4SMichael Lange } 156015078cd4SMichael Lange 15613b8f15a2SMatthew G. Knepley /*@C 156270034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 156370034214SMatthew G. Knepley 156483655b49SVáclav Hapla Collective on DM 156570034214SMatthew G. Knepley 156670034214SMatthew G. Knepley Input Parameter: 156770034214SMatthew G. Knepley + dm - The original DMPlex object 156870034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 156970034214SMatthew G. Knepley 157070034214SMatthew G. Knepley Output Parameter: 1571f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1572f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 157370034214SMatthew G. Knepley 1574f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 157570034214SMatthew G. Knepley 1576*b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 157770034214SMatthew G. Knepley representation on the mesh. 157870034214SMatthew G. Knepley 157970034214SMatthew G. Knepley Level: intermediate 158070034214SMatthew G. Knepley 158170034214SMatthew G. Knepley .keywords: mesh, elements 1582*b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency() 158370034214SMatthew G. Knepley @*/ 158480cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 158570034214SMatthew G. Knepley { 158670034214SMatthew G. Knepley MPI_Comm comm; 158715078cd4SMichael Lange PetscPartitioner partitioner; 1588f8987ae8SMichael Lange IS cellPart; 1589f8987ae8SMichael Lange PetscSection cellPartSection; 1590cf86098cSMatthew G. Knepley DM dmCoord; 1591f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 159243f7d02bSMichael Lange PetscSF sfProcess, sfMigration, sfStratified, sfPoint; 159398ba2d7fSLawrence Mitchell PetscBool flg, balance; 15949852e123SBarry Smith PetscMPIInt rank, size, p; 159570034214SMatthew G. Knepley PetscErrorCode ierr; 159670034214SMatthew G. Knepley 159770034214SMatthew G. Knepley PetscFunctionBegin; 159870034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1599d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1600d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1601d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 160270034214SMatthew G. Knepley 16030c86c063SLisandro Dalcin if (sf) *sf = NULL; 16040c86c063SLisandro Dalcin *dmParallel = NULL; 160570034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 160670034214SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 16079852e123SBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 16080c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 160970034214SMatthew G. Knepley 16100c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 161115078cd4SMichael Lange /* Create cell partition */ 161267eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 161377623264SMatthew G. Knepley ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr); 161415078cd4SMichael Lange ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr); 161515078cd4SMichael Lange ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr); 1616f8987ae8SMichael Lange { 1617f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1618f8987ae8SMichael Lange PetscInt proc, pStart, pEnd, npoints, poffset; 1619f8987ae8SMichael Lange const PetscInt *points; 1620d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr); 1621f8987ae8SMichael Lange ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr); 1622f8987ae8SMichael Lange ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1623f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 1624f8987ae8SMichael Lange ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1625f8987ae8SMichael Lange ierr = PetscSectionGetOffset(cellPartSection, proc, &poffset);CHKERRQ(ierr); 1626f8987ae8SMichael Lange for (p = poffset; p < poffset+npoints; p++) { 1627f8987ae8SMichael Lange ierr = DMLabelSetValue(lblPartition, points[p], proc);CHKERRQ(ierr); 162870034214SMatthew G. Knepley } 1629f8987ae8SMichael Lange } 1630f8987ae8SMichael Lange ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr); 1631f8987ae8SMichael Lange } 1632f8987ae8SMichael Lange ierr = DMPlexPartitionLabelClosure(dm, lblPartition);CHKERRQ(ierr); 1633f8987ae8SMichael Lange { 1634f8987ae8SMichael Lange /* Build a global process SF */ 1635f8987ae8SMichael Lange PetscSFNode *remoteProc; 16369852e123SBarry Smith ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr); 16379852e123SBarry Smith for (p = 0; p < size; ++p) { 1638f8987ae8SMichael Lange remoteProc[p].rank = p; 1639f8987ae8SMichael Lange remoteProc[p].index = rank; 1640f8987ae8SMichael Lange } 1641f8987ae8SMichael Lange ierr = PetscSFCreate(comm, &sfProcess);CHKERRQ(ierr); 1642f8987ae8SMichael Lange ierr = PetscObjectSetName((PetscObject) sfProcess, "Process SF");CHKERRQ(ierr); 16439852e123SBarry Smith ierr = PetscSFSetGraph(sfProcess, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr); 1644f8987ae8SMichael Lange } 1645d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr); 1646f8987ae8SMichael Lange ierr = DMPlexPartitionLabelInvert(dm, lblPartition, sfProcess, lblMigration);CHKERRQ(ierr); 1647302440fdSBarry Smith ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr); 164843f7d02bSMichael Lange /* Stratify the SF in case we are migrating an already parallel plex */ 164943f7d02bSMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr); 165043f7d02bSMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 165143f7d02bSMichael Lange sfMigration = sfStratified; 165267eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1653c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 165470034214SMatthew G. Knepley if (flg) { 1655f8987ae8SMichael Lange ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1656f8987ae8SMichael Lange ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 165770034214SMatthew G. Knepley } 1658f8987ae8SMichael Lange 165915078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 166070034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 166170034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 1662b9f40539SMichael Lange ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr); 166370034214SMatthew G. Knepley 1664a157612eSMichael Lange /* Build the point SF without overlap */ 166598ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 166698ba2d7fSLawrence Mitchell ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr); 16671627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr); 1668f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr); 1669cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr); 1670cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1671f5bf2dbfSMichael Lange if (flg) {ierr = PetscSFView(sfPoint, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);} 167270034214SMatthew G. Knepley 1673a157612eSMichael Lange if (overlap > 0) { 167415078cd4SMichael Lange DM dmOverlap; 167515078cd4SMichael Lange PetscInt nroots, nleaves; 167615078cd4SMichael Lange PetscSFNode *newRemote; 167715078cd4SMichael Lange const PetscSFNode *oldRemote; 167815078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1679a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 1680b9f40539SMichael Lange ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr); 1681a157612eSMichael Lange ierr = DMDestroy(dmParallel);CHKERRQ(ierr); 1682a157612eSMichael Lange *dmParallel = dmOverlap; 1683c389ea9fSToby Isaac if (flg) { 16843d822a50SMichael Lange ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr); 168515078cd4SMichael Lange ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr); 1686c389ea9fSToby Isaac } 168743331d4aSMichael Lange 1688f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 1689f8987ae8SMichael Lange ierr = PetscSFGetGraph(sfMigration, &nroots, NULL, NULL, &oldRemote);CHKERRQ(ierr); 169015078cd4SMichael Lange ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 169143331d4aSMichael Lange ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr); 169215078cd4SMichael Lange ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 169315078cd4SMichael Lange ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 169415078cd4SMichael Lange ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr); 169515078cd4SMichael Lange ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 169615078cd4SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1697f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 169815078cd4SMichael Lange sfMigration = sfOverlapPoint; 1699c389ea9fSToby Isaac } 1700bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 1701f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfProcess);CHKERRQ(ierr); 1702f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr); 1703f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr); 17044eca1733SMichael Lange ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 17054eca1733SMichael Lange ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 1706721cbd76SMatthew G. Knepley /* Copy BC */ 1707a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); 170866fe0bfeSMatthew G. Knepley /* Create sfNatural */ 170966fe0bfeSMatthew G. Knepley if (dm->useNatural) { 171066fe0bfeSMatthew G. Knepley PetscSection section; 171166fe0bfeSMatthew G. Knepley 1712e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 17130c1f158bSMatthew G. Knepley ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr); 17140e663481SBlaise Bourdin ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr); 171566fe0bfeSMatthew G. Knepley } 1716721cbd76SMatthew G. Knepley /* Cleanup */ 1717f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 1718f8987ae8SMichael Lange else {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);} 1719f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 172070034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 172170034214SMatthew G. Knepley PetscFunctionReturn(0); 172270034214SMatthew G. Knepley } 1723a157612eSMichael Lange 1724a157612eSMichael Lange /*@C 172524cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1726a157612eSMichael Lange 172783655b49SVáclav Hapla Collective on DM 1728a157612eSMichael Lange 1729a157612eSMichael Lange Input Parameter: 1730a157612eSMichael Lange + dm - The non-overlapping distrbuted DMPlex object 17310c86c063SLisandro Dalcin - overlap - The overlap of partitions 1732a157612eSMichael Lange 1733a157612eSMichael Lange Output Parameter: 1734a157612eSMichael Lange + sf - The PetscSF used for point distribution 1735a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1736a157612eSMichael Lange 1737a157612eSMichael Lange Note: If the mesh was not distributed, the return value is NULL. 1738a157612eSMichael Lange 1739*b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1740a157612eSMichael Lange representation on the mesh. 1741a157612eSMichael Lange 1742a157612eSMichael Lange Level: intermediate 1743a157612eSMichael Lange 1744a157612eSMichael Lange .keywords: mesh, elements 1745*b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency() 1746a157612eSMichael Lange @*/ 1747b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1748a157612eSMichael Lange { 1749a157612eSMichael Lange MPI_Comm comm; 17503567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1751a157612eSMichael Lange PetscSection rootSection, leafSection; 1752a157612eSMichael Lange IS rootrank, leafrank; 1753cf86098cSMatthew G. Knepley DM dmCoord; 1754a9f1d5b2SMichael Lange DMLabel lblOverlap; 1755f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1756a157612eSMichael Lange PetscErrorCode ierr; 1757a157612eSMichael Lange 1758a157612eSMichael Lange PetscFunctionBegin; 1759a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1760a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1761a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1762a157612eSMichael Lange 17630c86c063SLisandro Dalcin if (sf) *sf = NULL; 17640c86c063SLisandro Dalcin *dmOverlap = NULL; 1765a157612eSMichael Lange ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 17663567eaeeSMatthew G. Knepley ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 1767a157612eSMichael Lange ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 17680c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1769a157612eSMichael Lange 17700c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1771a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 177267eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1773a157612eSMichael Lange ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr); 1774a157612eSMichael Lange ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr); 1775a157612eSMichael Lange ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr); 1776a9f1d5b2SMichael Lange ierr = DMPlexCreateOverlap(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr); 1777a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 1778a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr); 1779a9f1d5b2SMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr); 1780a9f1d5b2SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1781a9f1d5b2SMichael Lange sfOverlap = sfStratified; 1782a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr); 1783a9f1d5b2SMichael Lange ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr); 1784a9f1d5b2SMichael Lange 178515fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr); 178615fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr); 178715fff7beSMatthew G. Knepley ierr = ISDestroy(&rootrank);CHKERRQ(ierr); 178815fff7beSMatthew G. Knepley ierr = ISDestroy(&leafrank);CHKERRQ(ierr); 178967eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1790a157612eSMichael Lange 1791a157612eSMichael Lange /* Build the overlapping DM */ 1792a157612eSMichael Lange ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr); 1793a157612eSMichael Lange ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr); 1794a9f1d5b2SMichael Lange ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr); 1795f5bf2dbfSMichael Lange /* Build the new point SF */ 17961627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 1797f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr); 1798cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr); 1799cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1800f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1801a157612eSMichael Lange /* Cleanup overlap partition */ 1802a9f1d5b2SMichael Lange ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr); 1803a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 1804a9f1d5b2SMichael Lange else {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);} 18051b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1806a157612eSMichael Lange PetscFunctionReturn(0); 1807a157612eSMichael Lange } 18086462276dSToby Isaac 18096462276dSToby Isaac /*@C 18106462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 18116462276dSToby Isaac root process of the original's communicator. 18126462276dSToby Isaac 181383655b49SVáclav Hapla Collective on DM 181483655b49SVáclav Hapla 18156462276dSToby Isaac Input Parameters: 18166462276dSToby Isaac . dm - the original DMPlex object 18176462276dSToby Isaac 18186462276dSToby Isaac Output Parameters: 1819a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1820a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 18216462276dSToby Isaac 18226462276dSToby Isaac Level: intermediate 18236462276dSToby Isaac 18246462276dSToby Isaac .keywords: mesh 18256462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM() 18266462276dSToby Isaac @*/ 1827a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 18286462276dSToby Isaac { 18296462276dSToby Isaac MPI_Comm comm; 18306462276dSToby Isaac PetscMPIInt size; 18316462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 18326462276dSToby Isaac PetscErrorCode ierr; 18336462276dSToby Isaac 18346462276dSToby Isaac PetscFunctionBegin; 18356462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18360c86c063SLisandro Dalcin PetscValidPointer(gatherMesh,2); 18370c86c063SLisandro Dalcin *gatherMesh = NULL; 1838a13df41bSStefano Zampini if (sf) *sf = NULL; 18396462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 18406462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 18416462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 18426462276dSToby Isaac ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr); 18436462276dSToby Isaac ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr); 18446462276dSToby Isaac ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr); 18456462276dSToby Isaac ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr); 18466462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr); 1847a13df41bSStefano Zampini ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr); 1848a13df41bSStefano Zampini 18496462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr); 18506462276dSToby Isaac ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr); 18516462276dSToby Isaac ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr); 18526462276dSToby Isaac PetscFunctionReturn(0); 18536462276dSToby Isaac } 18546462276dSToby Isaac 18556462276dSToby Isaac /*@C 18566462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 18576462276dSToby Isaac 185883655b49SVáclav Hapla Collective on DM 185983655b49SVáclav Hapla 18606462276dSToby Isaac Input Parameters: 18616462276dSToby Isaac . dm - the original DMPlex object 18626462276dSToby Isaac 18636462276dSToby Isaac Output Parameters: 1864a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1865a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 18666462276dSToby Isaac 18676462276dSToby Isaac Level: intermediate 18686462276dSToby Isaac 18696462276dSToby Isaac .keywords: mesh 18706462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM() 18716462276dSToby Isaac @*/ 1872a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 18736462276dSToby Isaac { 18746462276dSToby Isaac MPI_Comm comm; 18756462276dSToby Isaac PetscMPIInt size, rank; 18766462276dSToby Isaac PetscInt pStart, pEnd, p; 18776462276dSToby Isaac PetscInt numPoints = -1; 1878a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 18796462276dSToby Isaac DM gatherDM, dmCoord; 18806462276dSToby Isaac PetscSFNode *points; 18816462276dSToby Isaac PetscErrorCode ierr; 18826462276dSToby Isaac 18836462276dSToby Isaac PetscFunctionBegin; 18846462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18850c86c063SLisandro Dalcin PetscValidPointer(redundantMesh,2); 18860c86c063SLisandro Dalcin *redundantMesh = NULL; 18876462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 18886462276dSToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 188968dbc166SMatthew G. Knepley if (size == 1) { 189068dbc166SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 189168dbc166SMatthew G. Knepley *redundantMesh = dm; 1892a13df41bSStefano Zampini if (sf) *sf = NULL; 189368dbc166SMatthew G. Knepley PetscFunctionReturn(0); 189468dbc166SMatthew G. Knepley } 1895a13df41bSStefano Zampini ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr); 18966462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 18976462276dSToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 18986462276dSToby Isaac ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr); 18996462276dSToby Isaac numPoints = pEnd - pStart; 19006462276dSToby Isaac ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr); 19016462276dSToby Isaac ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr); 19026462276dSToby Isaac ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr); 19036462276dSToby Isaac for (p = 0; p < numPoints; p++) { 19046462276dSToby Isaac points[p].index = p; 19056462276dSToby Isaac points[p].rank = 0; 19066462276dSToby Isaac } 19076462276dSToby Isaac ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr); 19086462276dSToby Isaac ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr); 19096462276dSToby Isaac ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr); 19106462276dSToby Isaac ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr); 19116462276dSToby Isaac ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 19126462276dSToby Isaac ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr); 19136462276dSToby Isaac ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr); 19146462276dSToby Isaac if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 19156462276dSToby Isaac ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1916a13df41bSStefano Zampini if (sf) { 1917a13df41bSStefano Zampini PetscSF tsf; 1918a13df41bSStefano Zampini 1919a13df41bSStefano Zampini ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr); 1920a13df41bSStefano Zampini ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr); 1921a13df41bSStefano Zampini ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr); 1922a13df41bSStefano Zampini } 19236462276dSToby Isaac ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr); 1924a13df41bSStefano Zampini ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr); 19256462276dSToby Isaac ierr = DMDestroy(&gatherDM);CHKERRQ(ierr); 19266462276dSToby Isaac PetscFunctionReturn(0); 19276462276dSToby Isaac } 1928