xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision b0441da4f7532a7d5ee49e4c9b30a09111112088)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19*b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser()
203c1f0c11SLawrence Mitchell @*/
213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx)
223c1f0c11SLawrence Mitchell {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
393c1f0c11SLawrence Mitchell - user    - The user callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44*b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser()
453c1f0c11SLawrence Mitchell @*/
463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx)
473c1f0c11SLawrence Mitchell {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66*b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
678b0b4c70SToby Isaac @*/
685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
698b0b4c70SToby Isaac {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
758b0b4c70SToby Isaac   PetscFunctionReturn(0);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89*b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
908b0b4c70SToby Isaac @*/
915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
928b0b4c70SToby Isaac {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
975b317d89SToby Isaac   PetscValidIntPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
998b0b4c70SToby Isaac   PetscFunctionReturn(0);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
10370034214SMatthew G. Knepley {
10470034214SMatthew G. Knepley   const PetscInt *cone = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley   PetscErrorCode  ierr;
10770034214SMatthew G. Knepley 
10870034214SMatthew G. Knepley   PetscFunctionBeginHot;
10970034214SMatthew G. Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
11070034214SMatthew G. Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
1114b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1124b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
11370034214SMatthew G. Knepley     const PetscInt *support = NULL;
11470034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11570034214SMatthew G. Knepley 
1164b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr);
1174b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr);
11870034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
119527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) {
12070034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12170034214SMatthew G. Knepley       }
12270034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
12370034214SMatthew G. Knepley     }
12470034214SMatthew G. Knepley   }
12570034214SMatthew G. Knepley   *adjSize = numAdj;
12670034214SMatthew G. Knepley   PetscFunctionReturn(0);
12770034214SMatthew G. Knepley }
12870034214SMatthew G. Knepley 
12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
13070034214SMatthew G. Knepley {
13170034214SMatthew G. Knepley   const PetscInt *support = NULL;
13270034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
13370034214SMatthew G. Knepley   PetscErrorCode  ierr;
13470034214SMatthew G. Knepley 
13570034214SMatthew G. Knepley   PetscFunctionBeginHot;
13670034214SMatthew G. Knepley   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
13770034214SMatthew G. Knepley   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
1384b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1394b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
14070034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
14170034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14270034214SMatthew G. Knepley 
1434b6b44bdSMatthew G. Knepley     ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr);
1444b6b44bdSMatthew G. Knepley     ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr);
14570034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
146527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) {
14770034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14870034214SMatthew G. Knepley       }
14970034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
15070034214SMatthew G. Knepley     }
15170034214SMatthew G. Knepley   }
15270034214SMatthew G. Knepley   *adjSize = numAdj;
15370034214SMatthew G. Knepley   PetscFunctionReturn(0);
15470034214SMatthew G. Knepley }
15570034214SMatthew G. Knepley 
15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
15770034214SMatthew G. Knepley {
15870034214SMatthew G. Knepley   PetscInt      *star = NULL;
15970034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
16070034214SMatthew G. Knepley   PetscErrorCode ierr;
16170034214SMatthew G. Knepley 
16270034214SMatthew G. Knepley   PetscFunctionBeginHot;
16370034214SMatthew G. Knepley   ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
16470034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
16570034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16670034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16770034214SMatthew G. Knepley 
16870034214SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
16970034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
170527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) {
17170034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
17270034214SMatthew G. Knepley       }
17370034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
17470034214SMatthew G. Knepley     }
17570034214SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
17670034214SMatthew G. Knepley   }
17770034214SMatthew G. Knepley   ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
17870034214SMatthew G. Knepley   *adjSize = numAdj;
17970034214SMatthew G. Knepley   PetscFunctionReturn(0);
18070034214SMatthew G. Knepley }
18170034214SMatthew G. Knepley 
1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
18370034214SMatthew G. Knepley {
18479bad331SMatthew G. Knepley   static PetscInt asiz = 0;
1858b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
1868b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
1878b0b4c70SToby Isaac   PetscInt maxAdjSize;
1888b0b4c70SToby Isaac   PetscSection aSec = NULL;
1898b0b4c70SToby Isaac   IS aIS = NULL;
1908b0b4c70SToby Isaac   const PetscInt *anchors;
1913c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
19270034214SMatthew G. Knepley   PetscErrorCode  ierr;
19370034214SMatthew G. Knepley 
19470034214SMatthew G. Knepley   PetscFunctionBeginHot;
1955b317d89SToby Isaac   if (useAnchors) {
196a17985deSToby Isaac     ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr);
1978b0b4c70SToby Isaac     if (aSec) {
1988b0b4c70SToby Isaac       ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr);
19924c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
2008b0b4c70SToby Isaac       ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr);
2018b0b4c70SToby Isaac       ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr);
2028b0b4c70SToby Isaac     }
2038b0b4c70SToby Isaac   }
20479bad331SMatthew G. Knepley   if (!*adj) {
20524c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20679bad331SMatthew G. Knepley 
20724c766afSToby Isaac     ierr  = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr);
20879bad331SMatthew G. Knepley     ierr  = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
20924c766afSToby Isaac     ierr  = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr);
21024c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
21124c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
21224c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2138b0b4c70SToby Isaac     asiz *= maxAnchors;
21424c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
21579bad331SMatthew G. Knepley     ierr  = PetscMalloc1(asiz,adj);CHKERRQ(ierr);
21679bad331SMatthew G. Knepley   }
21779bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2188b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2193c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
2203c1f0c11SLawrence Mitchell     ierr = mesh->useradjacency(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr);
2213c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
22279bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr);
22370034214SMatthew G. Knepley   } else if (useCone) {
22479bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22570034214SMatthew G. Knepley   } else {
22679bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22770034214SMatthew G. Knepley   }
2285b317d89SToby Isaac   if (useAnchors && aSec) {
2298b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
2308b0b4c70SToby Isaac     PetscInt numAdj = origSize;
2318b0b4c70SToby Isaac     PetscInt i = 0, j;
2328b0b4c70SToby Isaac     PetscInt *orig = *adj;
2338b0b4c70SToby Isaac 
2348b0b4c70SToby Isaac     while (i < origSize) {
2358b0b4c70SToby Isaac       PetscInt p = orig[i];
2368b0b4c70SToby Isaac       PetscInt aDof = 0;
2378b0b4c70SToby Isaac 
2388b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
2398b0b4c70SToby Isaac         ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr);
2408b0b4c70SToby Isaac       }
2418b0b4c70SToby Isaac       if (aDof) {
2428b0b4c70SToby Isaac         PetscInt aOff;
2438b0b4c70SToby Isaac         PetscInt s, q;
2448b0b4c70SToby Isaac 
2458b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
2468b0b4c70SToby Isaac           orig[j - 1] = orig[j];
2478b0b4c70SToby Isaac         }
2488b0b4c70SToby Isaac         origSize--;
2498b0b4c70SToby Isaac         numAdj--;
2508b0b4c70SToby Isaac         ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr);
2518b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
252527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) {
2538b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
2548b0b4c70SToby Isaac           }
2558b0b4c70SToby Isaac           if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
2568b0b4c70SToby Isaac         }
2578b0b4c70SToby Isaac       }
2588b0b4c70SToby Isaac       else {
2598b0b4c70SToby Isaac         i++;
2608b0b4c70SToby Isaac       }
2618b0b4c70SToby Isaac     }
2628b0b4c70SToby Isaac     *adjSize = numAdj;
2638b0b4c70SToby Isaac     ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr);
2648b0b4c70SToby Isaac   }
26570034214SMatthew G. Knepley   PetscFunctionReturn(0);
26670034214SMatthew G. Knepley }
26770034214SMatthew G. Knepley 
26870034214SMatthew G. Knepley /*@
26970034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
27070034214SMatthew G. Knepley 
27170034214SMatthew G. Knepley   Input Parameters:
27270034214SMatthew G. Knepley + dm - The DM object
27370034214SMatthew G. Knepley . p  - The point
27470034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE
27570034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize
27670034214SMatthew G. Knepley 
27770034214SMatthew G. Knepley   Output Parameters:
27870034214SMatthew G. Knepley + adjSize - The number of adjacent points
27970034214SMatthew G. Knepley - adj - The adjacent points
28070034214SMatthew G. Knepley 
28170034214SMatthew G. Knepley   Level: advanced
28270034214SMatthew G. Knepley 
28395452b02SPatrick Sanan   Notes:
28495452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
28570034214SMatthew G. Knepley 
286*b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator()
28770034214SMatthew G. Knepley @*/
28870034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
28970034214SMatthew G. Knepley {
2901cf84007SMatthew G. Knepley   PetscBool      useCone, useClosure, useAnchors;
29170034214SMatthew G. Knepley   PetscErrorCode ierr;
29270034214SMatthew G. Knepley 
29370034214SMatthew G. Knepley   PetscFunctionBeginHot;
29470034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29570034214SMatthew G. Knepley   PetscValidPointer(adjSize,3);
29670034214SMatthew G. Knepley   PetscValidPointer(adj,4);
297*b0441da4SMatthew G. Knepley   ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
2981cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
2991cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr);
30070034214SMatthew G. Knepley   PetscFunctionReturn(0);
30170034214SMatthew G. Knepley }
30208633170SToby Isaac 
303b0a623aaSMatthew G. Knepley /*@
304b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
305b0a623aaSMatthew G. Knepley 
306b0a623aaSMatthew G. Knepley   Collective on DM
307b0a623aaSMatthew G. Knepley 
308b0a623aaSMatthew G. Knepley   Input Parameters:
309b0a623aaSMatthew G. Knepley + dm      - The DM
310b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity
311b0a623aaSMatthew G. Knepley 
312b0a623aaSMatthew G. Knepley   Output Parameters:
313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
314b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
315b0a623aaSMatthew G. Knepley 
316b0a623aaSMatthew G. Knepley   Level: developer
317b0a623aaSMatthew G. Knepley 
318b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF()
319b0a623aaSMatthew G. Knepley @*/
320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
321b0a623aaSMatthew G. Knepley {
322b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
323b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
324b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
325b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
326b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
327b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
328b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3299852e123SBarry Smith   PetscMPIInt        size, proc, rank;
330b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
331b0a623aaSMatthew G. Knepley 
332b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
333b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
334b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
335b0a623aaSMatthew G. Knepley   if (processRanks) {PetscValidPointer(processRanks, 3);}
336b0a623aaSMatthew G. Knepley   if (sfProcess)    {PetscValidPointer(sfProcess, 4);}
3379852e123SBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
338b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
339b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr);
3409852e123SBarry Smith   ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr);
3419852e123SBarry Smith   ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr);
342b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
343b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr);
344b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr);
345b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
346b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
347b0a623aaSMatthew G. Knepley 
348b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr);
349b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr);
350302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
351b0a623aaSMatthew G. Knepley   }
352b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr);
353b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
354b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr);
355b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr);
356b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
357b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
358b0a623aaSMatthew G. Knepley 
359b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr);
360b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr);
361302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
362b0a623aaSMatthew G. Knepley   }
363b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr);
364b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
365b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
366b0a623aaSMatthew G. Knepley   /* Calculate edges */
367b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3689852e123SBarry Smith   for(proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
369b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr);
370b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr);
371b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr);
3729852e123SBarry Smith   for(proc = 0, n = 0; proc < size; ++proc) {
373b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
374b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
375b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
376b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
377b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
378b0a623aaSMatthew G. Knepley       ++n;
379b0a623aaSMatthew G. Knepley     }
380b0a623aaSMatthew G. Knepley   }
381b0a623aaSMatthew G. Knepley   ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr);
382b0a623aaSMatthew G. Knepley   if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);}
383b0a623aaSMatthew G. Knepley   else              {ierr = PetscFree(ranksNew);CHKERRQ(ierr);}
384b0a623aaSMatthew G. Knepley   if (sfProcess) {
385b0a623aaSMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr);
386b0a623aaSMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr);
387b0a623aaSMatthew G. Knepley     ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr);
3889852e123SBarry Smith     ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
389b0a623aaSMatthew G. Knepley   }
390b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
391b0a623aaSMatthew G. Knepley }
392b0a623aaSMatthew G. Knepley 
393b0a623aaSMatthew G. Knepley /*@
394b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
395b0a623aaSMatthew G. Knepley 
396b0a623aaSMatthew G. Knepley   Collective on DM
397b0a623aaSMatthew G. Knepley 
398b0a623aaSMatthew G. Knepley   Input Parameter:
399b0a623aaSMatthew G. Knepley . dm - The DM
400b0a623aaSMatthew G. Knepley 
401b0a623aaSMatthew G. Knepley   Output Parameters:
402b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
403b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
404b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
405b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
406b0a623aaSMatthew G. Knepley 
407b0a623aaSMatthew G. Knepley   Level: developer
408b0a623aaSMatthew G. Knepley 
409b0a623aaSMatthew G. Knepley .seealso: DMPlexCreateOverlap()
410b0a623aaSMatthew G. Knepley @*/
411b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
412b0a623aaSMatthew G. Knepley {
413b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
414b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
415b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
416b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
417b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
418b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
419b0a623aaSMatthew G. Knepley   PetscErrorCode  ierr;
420b0a623aaSMatthew G. Knepley 
421b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
422b0a623aaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
423b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
424b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
425b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
426b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
427b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr);
428b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr);
429b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr);
430b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr);
431b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);}
432b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr);
433b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
434b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr);
435b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr);
436b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(nedges,  &remoterank);CHKERRQ(ierr);
437b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
438b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
439b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
440b0a623aaSMatthew G. Knepley   ierr = PetscFree(myrank);CHKERRQ(ierr);
441b0a623aaSMatthew G. Knepley   ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr);
442b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
443b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr);
444b0a623aaSMatthew G. Knepley   ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr);
445b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
446b0a623aaSMatthew G. Knepley }
447b0a623aaSMatthew G. Knepley 
448278397a0SMatthew G. Knepley /*@C
449b0a623aaSMatthew G. Knepley   DMPlexCreateOverlap - Compute owner information for shared points. This basically gets two-sided for an SF.
450b0a623aaSMatthew G. Knepley 
451b0a623aaSMatthew G. Knepley   Collective on DM
452b0a623aaSMatthew G. Knepley 
453b0a623aaSMatthew G. Knepley   Input Parameters:
454b0a623aaSMatthew G. Knepley + dm          - The DM
45524d039d7SMichael Lange . levels      - Number of overlap levels
456b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
457b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
458b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
459b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
460b0a623aaSMatthew G. Knepley 
461b0a623aaSMatthew G. Knepley   Output Parameters:
462a9f1d5b2SMichael Lange + ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
463b0a623aaSMatthew G. Knepley 
464b0a623aaSMatthew G. Knepley   Level: developer
465b0a623aaSMatthew G. Knepley 
4661fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute()
467b0a623aaSMatthew G. Knepley @*/
468a9f1d5b2SMichael Lange PetscErrorCode DMPlexCreateOverlap(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
469b0a623aaSMatthew G. Knepley {
470e540f424SMichael Lange   MPI_Comm           comm;
471b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
472b0a623aaSMatthew G. Knepley   PetscSF            sfPoint, sfProc;
473b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
474b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4751fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
476b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4771fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4789852e123SBarry Smith   PetscMPIInt        rank, size;
47926a7d390SMatthew G. Knepley   PetscBool          useCone, useClosure, flg;
480b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
481b0a623aaSMatthew G. Knepley 
482b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
483e540f424SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
4849852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
485e540f424SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
486b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
487b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
488b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr);
489b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr);
490d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr);
491b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
492b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
493b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
494b0a623aaSMatthew G. Knepley 
495df20756eSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr);
496b0a623aaSMatthew G. Knepley     for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);}
497b0a623aaSMatthew G. Knepley   }
498b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr);
499b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr);
500b0a623aaSMatthew G. Knepley   /* Handle roots */
501b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
502b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
503b0a623aaSMatthew G. Knepley 
504b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
505b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
506b0a623aaSMatthew G. Knepley       ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr);
507b0a623aaSMatthew G. Knepley       if (neighbors) {
508b0a623aaSMatthew G. Knepley         ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr);
509b0a623aaSMatthew G. Knepley         ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
510b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
511b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
512b0a623aaSMatthew G. Knepley 
513b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
514b0a623aaSMatthew G. Knepley           for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
515b0a623aaSMatthew G. Knepley         }
516b0a623aaSMatthew G. Knepley       }
517b0a623aaSMatthew G. Knepley     }
518b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
519b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr);
520b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
521b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr);
522b0a623aaSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
523b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
524b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
525b0a623aaSMatthew G. Knepley 
526b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
527b0a623aaSMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
528b0a623aaSMatthew G. Knepley     }
529b0a623aaSMatthew G. Knepley   }
530b0a623aaSMatthew G. Knepley   ierr = PetscFree(adj);CHKERRQ(ierr);
531b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr);
532b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr);
53324d039d7SMichael Lange   /* Add additional overlap levels */
534be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
535be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
536be200f8dSMichael Lange     ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr);
537be200f8dSMichael Lange     /* Add next level of point donations to the label */
538be200f8dSMichael Lange     ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr);
539be200f8dSMichael Lange   }
54026a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
541*b0441da4SMatthew G. Knepley   ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
54226a7d390SMatthew G. Knepley   if (useCone || !useClosure) {
5435abbe4feSMichael Lange     ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr);
54426a7d390SMatthew G. Knepley   }
545c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr);
546e540f424SMichael Lange   if (flg) {
547b0a623aaSMatthew G. Knepley     ierr = DMLabelView(ovAdjByRank, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
548b0a623aaSMatthew G. Knepley   }
54971a8c5fcSMichael Lange   /* Make global process SF and invert sender to receiver label */
55071a8c5fcSMichael Lange   {
55171a8c5fcSMichael Lange     /* Build a global process SF */
55271a8c5fcSMichael Lange     PetscSFNode *remoteProc;
5539852e123SBarry Smith     ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr);
5549852e123SBarry Smith     for (p = 0; p < size; ++p) {
55571a8c5fcSMichael Lange       remoteProc[p].rank  = p;
55671a8c5fcSMichael Lange       remoteProc[p].index = rank;
55771a8c5fcSMichael Lange     }
55871a8c5fcSMichael Lange     ierr = PetscSFCreate(comm, &sfProc);CHKERRQ(ierr);
55971a8c5fcSMichael Lange     ierr = PetscObjectSetName((PetscObject) sfProc, "Process SF");CHKERRQ(ierr);
5609852e123SBarry Smith     ierr = PetscSFSetGraph(sfProc, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr);
56171a8c5fcSMichael Lange   }
562d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr);
563a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, sfProc, *ovLabel);CHKERRQ(ierr);
564a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
565a9f1d5b2SMichael Lange   for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
566e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
567a9f1d5b2SMichael Lange     ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr);
568a9f1d5b2SMichael Lange     ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr);
569e540f424SMichael Lange   }
570e540f424SMichael Lange   /* Clean up */
5711fd9873aSMichael Lange   ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr);
572b0a623aaSMatthew G. Knepley   ierr = PetscSFDestroy(&sfProc);CHKERRQ(ierr);
573b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
574b0a623aaSMatthew G. Knepley }
57570034214SMatthew G. Knepley 
57624cc2ca5SMatthew G. Knepley /*@C
57724cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
57824cc2ca5SMatthew G. Knepley 
57924cc2ca5SMatthew G. Knepley   Collective on DM
58024cc2ca5SMatthew G. Knepley 
58124cc2ca5SMatthew G. Knepley   Input Parameters:
58224cc2ca5SMatthew G. Knepley + dm          - The DM
58324cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
58424cc2ca5SMatthew G. Knepley 
58524cc2ca5SMatthew G. Knepley   Output Parameters:
58624cc2ca5SMatthew G. Knepley + migrationSF - An SF that maps original points in old locations to points in new locations
58724cc2ca5SMatthew G. Knepley 
58824cc2ca5SMatthew G. Knepley   Level: developer
58924cc2ca5SMatthew G. Knepley 
59024cc2ca5SMatthew G. Knepley .seealso: DMPlexCreateOverlap(), DMPlexDistribute()
59124cc2ca5SMatthew G. Knepley @*/
59246f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
59346f9b1c3SMichael Lange {
59446f9b1c3SMichael Lange   MPI_Comm           comm;
5959852e123SBarry Smith   PetscMPIInt        rank, size;
59646f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
59746f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
59846f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
59946f9b1c3SMichael Lange   PetscSFNode       *iremote;
60046f9b1c3SMichael Lange   PetscSF            pointSF;
60146f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
60246f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
60346f9b1c3SMichael Lange   PetscErrorCode     ierr;
60446f9b1c3SMichael Lange 
60546f9b1c3SMichael Lange   PetscFunctionBegin;
60646f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
60746f9b1c3SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
60846f9b1c3SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
6099852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
61046f9b1c3SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
61146f9b1c3SMichael Lange 
61246f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
61346f9b1c3SMichael Lange   ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr);
61446f9b1c3SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
61546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
61646f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
61746f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
61846f9b1c3SMichael Lange   }
61946f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
62046f9b1c3SMichael Lange   ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
62146f9b1c3SMichael Lange   ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
62246f9b1c3SMichael Lange 
62346f9b1c3SMichael Lange   /* Count recevied points in each stratum and compute the internal strata shift */
62446f9b1c3SMichael Lange   ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr);
62546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
62646f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
62746f9b1c3SMichael Lange   depthShift[dim] = 0;
62846f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
62946f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
63046f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
63146f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
63246f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
63346f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
63446f9b1c3SMichael Lange   }
63546f9b1c3SMichael Lange 
63646f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
63746f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
63846f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
63909b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr);
64009b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr);
64146f9b1c3SMichael Lange   /* First map local points to themselves */
64246f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
64346f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
64446f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
64546f9b1c3SMichael Lange       point = p + depthShift[d];
64646f9b1c3SMichael Lange       ilocal[point] = point;
64746f9b1c3SMichael Lange       iremote[point].index = p;
64846f9b1c3SMichael Lange       iremote[point].rank = rank;
64946f9b1c3SMichael Lange       depthIdx[d]++;
65046f9b1c3SMichael Lange     }
65146f9b1c3SMichael Lange   }
65246f9b1c3SMichael Lange 
65346f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
65446f9b1c3SMichael Lange   ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr);
65546f9b1c3SMichael Lange   ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr);
65646f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
65746f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
65846f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
65946f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
66046f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
66146f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
66246f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
66346f9b1c3SMichael Lange       }
66446f9b1c3SMichael Lange     }
66546f9b1c3SMichael Lange   }
66646f9b1c3SMichael Lange 
66746f9b1c3SMichael Lange   /* Now add the incoming overlap points */
66846f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
66946f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
67046f9b1c3SMichael Lange     ilocal[point] = point;
67146f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
67246f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
67346f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
67446f9b1c3SMichael Lange   }
67515fff7beSMatthew G. Knepley   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
67646f9b1c3SMichael Lange 
67746f9b1c3SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
67846f9b1c3SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr);
67946f9b1c3SMichael Lange   ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr);
68046f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
68146f9b1c3SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
68246f9b1c3SMichael Lange 
68346f9b1c3SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
68470034214SMatthew G. Knepley   PetscFunctionReturn(0);
68570034214SMatthew G. Knepley }
68670034214SMatthew G. Knepley 
687a9f1d5b2SMichael Lange /*@
688f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
689a9f1d5b2SMichael Lange 
690a9f1d5b2SMichael Lange   Input Parameter:
691a9f1d5b2SMichael Lange + dm          - The DM
692a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
693a9f1d5b2SMichael Lange 
694a9f1d5b2SMichael Lange   Output Parameter:
695a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
696a9f1d5b2SMichael Lange 
697a9f1d5b2SMichael Lange   Level: developer
698a9f1d5b2SMichael Lange 
699a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap()
700a9f1d5b2SMichael Lange @*/
701a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
702a9f1d5b2SMichael Lange {
703a9f1d5b2SMichael Lange   MPI_Comm           comm;
7049852e123SBarry Smith   PetscMPIInt        rank, size;
7057fab53ddSMatthew G. Knepley   PetscInt           d, ldepth, depth, p, pStart, pEnd, nroots, nleaves;
706a9f1d5b2SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
707a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
708f0e73a3dSToby Isaac   PetscInt           hybEnd[4];
709a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
710a9f1d5b2SMichael Lange   PetscErrorCode     ierr;
711a9f1d5b2SMichael Lange 
712a9f1d5b2SMichael Lange   PetscFunctionBegin;
713a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
714a9f1d5b2SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
715a9f1d5b2SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
7169852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
7177fab53ddSMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr);
718b2566f29SBarry Smith   ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
7197fab53ddSMatthew G. Knepley   if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth);
720a9f1d5b2SMichael Lange 
721a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
722a9f1d5b2SMichael Lange   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr);
723a9f1d5b2SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
724f0e73a3dSToby Isaac   ierr = DMPlexGetHybridBounds(dm,&hybEnd[depth],&hybEnd[depth-1],&hybEnd[1],&hybEnd[0]);CHKERRQ(ierr);
7257fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
726a9f1d5b2SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
727f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
728f0e73a3dSToby Isaac       if (hybEnd[d] >= 0 && p >= hybEnd[d]) { /* put in a separate value for hybrid points */
729f0e73a3dSToby Isaac         pointDepths[p] = 2 * d;
730f0e73a3dSToby Isaac       } else {
731f0e73a3dSToby Isaac         pointDepths[p] = 2 * d + 1;
732f0e73a3dSToby Isaac       }
733f0e73a3dSToby Isaac     }
734a9f1d5b2SMichael Lange   }
7357fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1;
736a9f1d5b2SMichael Lange   ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
737a9f1d5b2SMichael Lange   ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
738a9f1d5b2SMichael Lange   /* Count recevied points in each stratum and compute the internal strata shift */
739f0e73a3dSToby Isaac   ierr = PetscMalloc3(2*(depth+1), &depthRecv, 2*(depth+1), &depthShift, 2*(depth+1), &depthIdx);CHKERRQ(ierr);
740f0e73a3dSToby Isaac   for (d = 0; d < 2*(depth+1); ++d) depthRecv[d] = 0;
7417fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++;
742f0e73a3dSToby Isaac   depthShift[2*depth+1] = 0;
743f0e73a3dSToby Isaac   for (d = 0; d < 2*depth+1; ++d) depthShift[d] = depthRecv[2 * depth + 1];
744f0e73a3dSToby Isaac   for (d = 0; d < 2*depth; ++d) depthShift[d] += depthRecv[2 * depth];
745f0e73a3dSToby Isaac   depthShift[0] += depthRecv[1];
746f0e73a3dSToby Isaac   for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[1];
747f0e73a3dSToby Isaac   for (d = 2; d < 2*depth; ++d) depthShift[d] += depthRecv[0];
748f0e73a3dSToby Isaac   for (d = 2 * depth-1; d > 2; --d) {
749f0e73a3dSToby Isaac     PetscInt e;
750f0e73a3dSToby Isaac 
751f0e73a3dSToby Isaac     for (e = d -1; e > 1; --e) depthShift[e] += depthRecv[d];
752f0e73a3dSToby Isaac   }
753f0e73a3dSToby Isaac   for (d = 0; d < 2*(depth+1); ++d) {depthIdx[d] = 0;}
754a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
755a9f1d5b2SMichael Lange   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
7567fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
7577fab53ddSMatthew G. Knepley     const PetscInt dep = remoteDepths[p];
7587fab53ddSMatthew G. Knepley 
7597fab53ddSMatthew G. Knepley     ilocal[p] = depthShift[dep] + depthIdx[dep];
7607fab53ddSMatthew G. Knepley     depthIdx[dep]++;
761a9f1d5b2SMichael Lange   }
762a9f1d5b2SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
763a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr);
764a9f1d5b2SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr);
765a9f1d5b2SMichael Lange   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
766a9f1d5b2SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
767a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
768a9f1d5b2SMichael Lange }
769a9f1d5b2SMichael Lange 
77070034214SMatthew G. Knepley /*@
77170034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
77270034214SMatthew G. Knepley 
77370034214SMatthew G. Knepley   Collective on DM
77470034214SMatthew G. Knepley 
77570034214SMatthew G. Knepley   Input Parameters:
77670034214SMatthew G. Knepley + dm - The DMPlex object
77770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
77870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
77970034214SMatthew G. Knepley - originalVec - The existing data
78070034214SMatthew G. Knepley 
78170034214SMatthew G. Knepley   Output Parameters:
78270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
78370034214SMatthew G. Knepley - newVec - The new data
78470034214SMatthew G. Knepley 
78570034214SMatthew G. Knepley   Level: developer
78670034214SMatthew G. Knepley 
78770034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData()
78870034214SMatthew G. Knepley @*/
78970034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
79070034214SMatthew G. Knepley {
79170034214SMatthew G. Knepley   PetscSF        fieldSF;
79270034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
79370034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
79470034214SMatthew G. Knepley   PetscErrorCode ierr;
79570034214SMatthew G. Knepley 
79670034214SMatthew G. Knepley   PetscFunctionBegin;
79770034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
79870034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
79970034214SMatthew G. Knepley 
80070034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
80170034214SMatthew G. Knepley   ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr);
80270034214SMatthew G. Knepley   ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr);
80370034214SMatthew G. Knepley 
80470034214SMatthew G. Knepley   ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr);
80570034214SMatthew G. Knepley   ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr);
80670034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8078a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
80870034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
80970034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
81070034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
81170034214SMatthew G. Knepley   ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr);
81270034214SMatthew G. Knepley   ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr);
81370034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
81470034214SMatthew G. Knepley   PetscFunctionReturn(0);
81570034214SMatthew G. Knepley }
81670034214SMatthew G. Knepley 
81770034214SMatthew G. Knepley /*@
81870034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
81970034214SMatthew G. Knepley 
82070034214SMatthew G. Knepley   Collective on DM
82170034214SMatthew G. Knepley 
82270034214SMatthew G. Knepley   Input Parameters:
82370034214SMatthew G. Knepley + dm - The DMPlex object
82470034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
82570034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
82670034214SMatthew G. Knepley - originalIS - The existing data
82770034214SMatthew G. Knepley 
82870034214SMatthew G. Knepley   Output Parameters:
82970034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
83070034214SMatthew G. Knepley - newIS - The new data
83170034214SMatthew G. Knepley 
83270034214SMatthew G. Knepley   Level: developer
83370034214SMatthew G. Knepley 
83470034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData()
83570034214SMatthew G. Knepley @*/
83670034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
83770034214SMatthew G. Knepley {
83870034214SMatthew G. Knepley   PetscSF         fieldSF;
83970034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
84070034214SMatthew G. Knepley   const PetscInt *originalValues;
84170034214SMatthew G. Knepley   PetscErrorCode  ierr;
84270034214SMatthew G. Knepley 
84370034214SMatthew G. Knepley   PetscFunctionBegin;
84470034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
84570034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
84670034214SMatthew G. Knepley 
84770034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
848854ce69bSBarry Smith   ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr);
84970034214SMatthew G. Knepley 
85070034214SMatthew G. Knepley   ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr);
85170034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8528a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
853aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
854aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
85570034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
85670034214SMatthew G. Knepley   ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr);
85770034214SMatthew G. Knepley   ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr);
85870034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
85970034214SMatthew G. Knepley   PetscFunctionReturn(0);
86070034214SMatthew G. Knepley }
86170034214SMatthew G. Knepley 
86270034214SMatthew G. Knepley /*@
86370034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
86470034214SMatthew G. Knepley 
86570034214SMatthew G. Knepley   Collective on DM
86670034214SMatthew G. Knepley 
86770034214SMatthew G. Knepley   Input Parameters:
86870034214SMatthew G. Knepley + dm - The DMPlex object
86970034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
87070034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
87170034214SMatthew G. Knepley . datatype - The type of data
87270034214SMatthew G. Knepley - originalData - The existing data
87370034214SMatthew G. Knepley 
87470034214SMatthew G. Knepley   Output Parameters:
87570034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
87670034214SMatthew G. Knepley - newData - The new data
87770034214SMatthew G. Knepley 
87870034214SMatthew G. Knepley   Level: developer
87970034214SMatthew G. Knepley 
88070034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField()
88170034214SMatthew G. Knepley @*/
88270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
88370034214SMatthew G. Knepley {
88470034214SMatthew G. Knepley   PetscSF        fieldSF;
88570034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
88670034214SMatthew G. Knepley   PetscMPIInt    dataSize;
88770034214SMatthew G. Knepley   PetscErrorCode ierr;
88870034214SMatthew G. Knepley 
88970034214SMatthew G. Knepley   PetscFunctionBegin;
89070034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
89170034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
89270034214SMatthew G. Knepley 
89370034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
89470034214SMatthew G. Knepley   ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr);
89570034214SMatthew G. Knepley   ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr);
89670034214SMatthew G. Knepley 
89770034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8988a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
89970034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
90070034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
90170034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
90270034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
90370034214SMatthew G. Knepley   PetscFunctionReturn(0);
90470034214SMatthew G. Knepley }
90570034214SMatthew G. Knepley 
90624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
907cc71bff1SMichael Lange {
908cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
909cc71bff1SMichael Lange   MPI_Comm               comm;
910cc71bff1SMichael Lange   PetscSF                coneSF;
911cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
912ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
913cc71bff1SMichael Lange   PetscBool              flg;
914cc71bff1SMichael Lange   PetscErrorCode         ierr;
915cc71bff1SMichael Lange 
916cc71bff1SMichael Lange   PetscFunctionBegin;
917cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9180c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
919cc71bff1SMichael Lange 
9200c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
921cc71bff1SMichael Lange   /* Distribute cone section */
922cc71bff1SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
923cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr);
924cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr);
925cc71bff1SMichael Lange   ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr);
926cc71bff1SMichael Lange   ierr = DMSetUp(dmParallel);CHKERRQ(ierr);
927cc71bff1SMichael Lange   {
928cc71bff1SMichael Lange     PetscInt pStart, pEnd, p;
929cc71bff1SMichael Lange 
930cc71bff1SMichael Lange     ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr);
931cc71bff1SMichael Lange     for (p = pStart; p < pEnd; ++p) {
932cc71bff1SMichael Lange       PetscInt coneSize;
933cc71bff1SMichael Lange       ierr               = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr);
934cc71bff1SMichael Lange       pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize);
935cc71bff1SMichael Lange     }
936cc71bff1SMichael Lange   }
937cc71bff1SMichael Lange   /* Communicate and renumber cones */
938cc71bff1SMichael Lange   ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr);
9398a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
940cc71bff1SMichael Lange   ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr);
941ac04eaf7SToby Isaac   if (original) {
942ac04eaf7SToby Isaac     PetscInt numCones;
943ac04eaf7SToby Isaac 
944367003a6SStefano Zampini     ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr);
945367003a6SStefano Zampini     ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr);
946ac04eaf7SToby Isaac     ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr);
947367003a6SStefano Zampini   } else {
948ac04eaf7SToby Isaac     globCones = cones;
949ac04eaf7SToby Isaac   }
950cc71bff1SMichael Lange   ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr);
951ac04eaf7SToby Isaac   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
952ac04eaf7SToby Isaac   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
953ac04eaf7SToby Isaac   if (original) {
954ac04eaf7SToby Isaac     ierr = PetscFree(globCones);CHKERRQ(ierr);
955ac04eaf7SToby Isaac   }
956cc71bff1SMichael Lange   ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr);
957cc71bff1SMichael Lange   ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr);
95862795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG)
9593533c52bSMatthew G. Knepley   {
9603533c52bSMatthew G. Knepley     PetscInt  p;
9613533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
9623533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
963367003a6SStefano Zampini       if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);}
9643533c52bSMatthew G. Knepley     }
9653533c52bSMatthew G. Knepley     if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
9663533c52bSMatthew G. Knepley   }
9673533c52bSMatthew G. Knepley #endif
968c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr);
969cc71bff1SMichael Lange   if (flg) {
970cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr);
971cc71bff1SMichael Lange     ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
972cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr);
973cc71bff1SMichael Lange     ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
974cc71bff1SMichael Lange     ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr);
975cc71bff1SMichael Lange   }
976cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr);
977cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr);
978cc71bff1SMichael Lange   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
979cc71bff1SMichael Lange   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
980cc71bff1SMichael Lange   ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr);
981cc71bff1SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
982eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
983cc71bff1SMichael Lange   {
984cc71bff1SMichael Lange     PetscInt pStart, pEnd;
985cc71bff1SMichael Lange 
986cc71bff1SMichael Lange     ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr);
987cc71bff1SMichael Lange     ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr);
988cc71bff1SMichael Lange   }
989cc71bff1SMichael Lange   ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr);
990cc71bff1SMichael Lange   ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr);
9911cf84007SMatthew G. Knepley   {
9921cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
9931cf84007SMatthew G. Knepley 
994*b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
995*b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
9961cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
9971cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
9981cf84007SMatthew G. Knepley   }
999cc71bff1SMichael Lange   PetscFunctionReturn(0);
1000cc71bff1SMichael Lange }
1001cc71bff1SMichael Lange 
100224cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
10030df0e737SMichael Lange {
10040df0e737SMichael Lange   MPI_Comm         comm;
10050df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
10060df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
10070df0e737SMichael Lange   PetscInt         bs;
100890b157c4SStefano Zampini   PetscBool        isper;
10090df0e737SMichael Lange   const char      *name;
10100df0e737SMichael Lange   const PetscReal *maxCell, *L;
10115dc8c3f7SMatthew G. Knepley   const DMBoundaryType *bd;
10120df0e737SMichael Lange   PetscErrorCode   ierr;
10130df0e737SMichael Lange 
10140df0e737SMichael Lange   PetscFunctionBegin;
10150df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10160c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10170df0e737SMichael Lange 
10180df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10190df0e737SMichael Lange   ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr);
10200df0e737SMichael Lange   ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr);
10210df0e737SMichael Lange   ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr);
10220df0e737SMichael Lange   if (originalCoordinates) {
10238b9ced59SLisandro Dalcin     ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr);
10240df0e737SMichael Lange     ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr);
10250df0e737SMichael Lange     ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr);
10260df0e737SMichael Lange 
10270df0e737SMichael Lange     ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr);
10280df0e737SMichael Lange     ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr);
10290df0e737SMichael Lange     ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr);
10300df0e737SMichael Lange     ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr);
10310df0e737SMichael Lange     ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr);
10320df0e737SMichael Lange   }
103390b157c4SStefano Zampini   ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr);
103490b157c4SStefano Zampini   ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr);
10350df0e737SMichael Lange   PetscFunctionReturn(0);
10360df0e737SMichael Lange }
10370df0e737SMichael Lange 
1038d995df53SMatthew G. Knepley /* Here we are assuming that process 0 always has everything */
103924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
10400df0e737SMichael Lange {
1041df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
10420df0e737SMichael Lange   MPI_Comm         comm;
10437980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
10440df0e737SMichael Lange   PetscMPIInt      rank;
10457980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1046df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1047df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
10480df0e737SMichael Lange   PetscErrorCode   ierr;
10490df0e737SMichael Lange 
10500df0e737SMichael Lange   PetscFunctionBegin;
10510df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10520c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10530c86c063SLisandro Dalcin 
10540df0e737SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
10550df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10560df0e737SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
10570df0e737SMichael Lange 
1058df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
10597980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
10607980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr);
1061d67d17b1SMatthew G. Knepley   if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);}
1062df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
1063b2566f29SBarry Smith   ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr);
1064df0420ecSMatthew G. Knepley   if (sendDepth) {
10657980c9d4SMatthew G. Knepley     ierr = DMRemoveLabel(dmParallel, "depth", &depthLabel);CHKERRQ(ierr);
10667980c9d4SMatthew G. Knepley     ierr = DMLabelDestroy(&depthLabel);CHKERRQ(ierr);
1067df0420ecSMatthew G. Knepley   }
1068d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
1069c58f1c22SToby Isaac   ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr);
1070d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
10710df0e737SMichael Lange   ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr);
1072627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
1073bdd2d751SMichael Lange   for (l = numLabels-1; l >= 0; --l) {
1074bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
107583e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput = PETSC_TRUE, isOutput;
1076d67d17b1SMatthew G. Knepley     const char *name = NULL;
10770df0e737SMichael Lange 
1078d67d17b1SMatthew G. Knepley     if (hasLabels) {
1079d67d17b1SMatthew G. Knepley       ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr);
10800df0e737SMichael Lange       /* Skip "depth" because it is recreated */
1081d67d17b1SMatthew G. Knepley       ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr);
1082d67d17b1SMatthew G. Knepley       ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr);
1083d67d17b1SMatthew G. Knepley     }
108483e10cb3SLisandro Dalcin     ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr);
108583e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
1086bdd2d751SMichael Lange     ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr);
108783e10cb3SLisandro Dalcin     if (isDepth) {
10887980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
10897980c9d4SMatthew G. Knepley       PetscInt gdepth;
10907980c9d4SMatthew G. Knepley 
10917980c9d4SMatthew G. Knepley       ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
10927980c9d4SMatthew G. Knepley       if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth);
10937980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
10947980c9d4SMatthew G. Knepley         PetscBool has;
10957980c9d4SMatthew G. Knepley 
10967980c9d4SMatthew G. Knepley         ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr);
109783e10cb3SLisandro Dalcin         if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);}
10987980c9d4SMatthew G. Knepley       }
10997980c9d4SMatthew G. Knepley     }
1100c58f1c22SToby Isaac     ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr);
110183e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
1102d67d17b1SMatthew G. Knepley     if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);}
110383e10cb3SLisandro Dalcin     ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr);
1104d67d17b1SMatthew G. Knepley     ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr);
1105d67d17b1SMatthew G. Knepley     ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr);
11060df0e737SMichael Lange   }
11070df0e737SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
11080df0e737SMichael Lange   PetscFunctionReturn(0);
11090df0e737SMichael Lange }
11100df0e737SMichael Lange 
111124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel)
11129734c634SMichael Lange {
11139734c634SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
11149734c634SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1115f0e73a3dSToby Isaac   PetscBool      *isHybrid, *isHybridParallel;
1116f0e73a3dSToby Isaac   PetscInt        dim, depth, d;
1117f0e73a3dSToby Isaac   PetscInt        pStart, pEnd, pStartP, pEndP;
11189734c634SMichael Lange   PetscErrorCode  ierr;
11199734c634SMichael Lange 
11209734c634SMichael Lange   PetscFunctionBegin;
11219734c634SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11220c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
11239734c634SMichael Lange 
11249734c634SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
11259734c634SMichael Lange   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
1126f0e73a3dSToby Isaac   ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr);
1127f0e73a3dSToby Isaac   ierr = DMPlexGetChart(dmParallel,&pStartP,&pEndP);CHKERRQ(ierr);
1128f0e73a3dSToby Isaac   ierr = PetscCalloc2(pEnd-pStart,&isHybrid,pEndP-pStartP,&isHybridParallel);CHKERRQ(ierr);
1129f0e73a3dSToby Isaac   for (d = 0; d <= depth; d++) {
1130f0e73a3dSToby Isaac     PetscInt hybridMax = (depth == 1 && d == 1) ? mesh->hybridPointMax[dim] : mesh->hybridPointMax[d];
11319734c634SMichael Lange 
1132f0e73a3dSToby Isaac     if (hybridMax >= 0) {
1133f0e73a3dSToby Isaac       PetscInt sStart, sEnd, p;
11349734c634SMichael Lange 
1135f0e73a3dSToby Isaac       ierr = DMPlexGetDepthStratum(dm,d,&sStart,&sEnd);CHKERRQ(ierr);
1136f0e73a3dSToby Isaac       for (p = hybridMax; p < sEnd; p++) isHybrid[p-pStart] = PETSC_TRUE;
11379734c634SMichael Lange     }
11389734c634SMichael Lange   }
1139f0e73a3dSToby Isaac   ierr = PetscSFBcastBegin(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr);
1140f0e73a3dSToby Isaac   ierr = PetscSFBcastEnd(migrationSF,MPIU_BOOL,isHybrid,isHybridParallel);CHKERRQ(ierr);
1141f0e73a3dSToby Isaac   for (d = 0; d <= dim; d++) pmesh->hybridPointMax[d] = -1;
1142f0e73a3dSToby Isaac   for (d = 0; d <= depth; d++) {
1143f0e73a3dSToby Isaac     PetscInt sStart, sEnd, p, dd;
1144f0e73a3dSToby Isaac 
1145f0e73a3dSToby Isaac     ierr = DMPlexGetDepthStratum(dmParallel,d,&sStart,&sEnd);CHKERRQ(ierr);
1146f0e73a3dSToby Isaac     dd = (depth == 1 && d == 1) ? dim : d;
1147f0e73a3dSToby Isaac     for (p = sStart; p < sEnd; p++) {
1148f0e73a3dSToby Isaac       if (isHybridParallel[p-pStartP]) {
1149f0e73a3dSToby Isaac         pmesh->hybridPointMax[dd] = p;
1150f0e73a3dSToby Isaac         break;
1151f0e73a3dSToby Isaac       }
1152f0e73a3dSToby Isaac     }
1153f0e73a3dSToby Isaac   }
1154f0e73a3dSToby Isaac   ierr = PetscFree2(isHybrid,isHybridParallel);CHKERRQ(ierr);
11559734c634SMichael Lange   PetscFunctionReturn(0);
11569734c634SMichael Lange }
11570df0e737SMichael Lange 
115824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1159a6f36705SMichael Lange {
116015078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
116115078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1162a6f36705SMichael Lange   MPI_Comm        comm;
1163a6f36705SMichael Lange   DM              refTree;
1164a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1165a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1166a6f36705SMichael Lange   PetscBool       flg;
1167a6f36705SMichael Lange   PetscErrorCode  ierr;
1168a6f36705SMichael Lange 
1169a6f36705SMichael Lange   PetscFunctionBegin;
1170a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11710c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
1172a6f36705SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1173a6f36705SMichael Lange 
1174a6f36705SMichael Lange   /* Set up tree */
1175a6f36705SMichael Lange   ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr);
1176a6f36705SMichael Lange   ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr);
1177a6f36705SMichael Lange   ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr);
1178a6f36705SMichael Lange   if (origParentSection) {
1179a6f36705SMichael Lange     PetscInt        pStart, pEnd;
118008633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1181a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1182a6f36705SMichael Lange     PetscSF         parentSF;
1183a6f36705SMichael Lange 
1184a6f36705SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
1185a6f36705SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr);
1186a6f36705SMichael Lange     ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr);
1187a6f36705SMichael Lange     ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr);
1188a6f36705SMichael Lange     ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr);
11898a713f3bSLawrence Mitchell     ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr);
1190a6f36705SMichael Lange     ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr);
1191a6f36705SMichael Lange     ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr);
119208633170SToby Isaac     if (original) {
119308633170SToby Isaac       PetscInt numParents;
119408633170SToby Isaac 
119508633170SToby Isaac       ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr);
119608633170SToby Isaac       ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr);
119708633170SToby Isaac       ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr);
119808633170SToby Isaac     }
119908633170SToby Isaac     else {
120008633170SToby Isaac       globParents = origParents;
120108633170SToby Isaac     }
120208633170SToby Isaac     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
120308633170SToby Isaac     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
120408633170SToby Isaac     if (original) {
120508633170SToby Isaac       ierr = PetscFree(globParents);CHKERRQ(ierr);
120608633170SToby Isaac     }
1207a6f36705SMichael Lange     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1208a6f36705SMichael Lange     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1209a6f36705SMichael Lange     ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr);
121062795ce3SStefano Zampini #if defined(PETSC_USE_DEBUG)
12114a54e071SToby Isaac     {
12124a54e071SToby Isaac       PetscInt  p;
12134a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
12144a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
12154a54e071SToby Isaac         if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);}
12164a54e071SToby Isaac       }
12174a54e071SToby Isaac       if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
12184a54e071SToby Isaac     }
12194a54e071SToby Isaac #endif
1220c5929fdfSBarry Smith     ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr);
1221a6f36705SMichael Lange     if (flg) {
1222a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr);
1223a6f36705SMichael Lange       ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1224a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr);
1225a6f36705SMichael Lange       ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1226a6f36705SMichael Lange       ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr);
1227a6f36705SMichael Lange     }
1228a6f36705SMichael Lange     ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr);
1229a6f36705SMichael Lange     ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr);
1230a6f36705SMichael Lange     ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr);
1231a6f36705SMichael Lange     ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr);
1232a6f36705SMichael Lange   }
123315078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1234a6f36705SMichael Lange   PetscFunctionReturn(0);
1235a6f36705SMichael Lange }
12360df0e737SMichael Lange 
123724cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
12384eca1733SMichael Lange {
12399852e123SBarry Smith   PetscMPIInt            rank, size;
12404eca1733SMichael Lange   MPI_Comm               comm;
12414eca1733SMichael Lange   PetscErrorCode         ierr;
12424eca1733SMichael Lange 
12434eca1733SMichael Lange   PetscFunctionBegin;
12444eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12450c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12464eca1733SMichael Lange 
12474eca1733SMichael Lange   /* Create point SF for parallel mesh */
12484eca1733SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12494eca1733SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
12504eca1733SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
12519852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
12524eca1733SMichael Lange   {
12534eca1733SMichael Lange     const PetscInt *leaves;
12544eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
12554eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
12564eca1733SMichael Lange     PetscInt        pStart, pEnd;
12574eca1733SMichael Lange 
12584eca1733SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
12594eca1733SMichael Lange     ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr);
12604eca1733SMichael Lange     ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr);
12614eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
12624eca1733SMichael Lange       rowners[p].rank  = -1;
12634eca1733SMichael Lange       rowners[p].index = -1;
12644eca1733SMichael Lange     }
12654eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12664eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12674eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12684eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
12694eca1733SMichael Lange         lowners[p].rank  = rank;
12704eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
12714eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
12724eca1733SMichael Lange         lowners[p].rank  = -2;
12734eca1733SMichael Lange         lowners[p].index = -2;
12744eca1733SMichael Lange       }
12754eca1733SMichael Lange     }
12764eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
12774eca1733SMichael Lange       rowners[p].rank  = -3;
12784eca1733SMichael Lange       rowners[p].index = -3;
12794eca1733SMichael Lange     }
12804eca1733SMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12814eca1733SMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12824eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12834eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12844eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12854eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
12864eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
12874eca1733SMichael Lange     }
12884eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr);
12894eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr);
12904eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
12914eca1733SMichael Lange       if (lowners[p].rank != rank) {
12924eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
12934eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
12944eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
12954eca1733SMichael Lange         ++gp;
12964eca1733SMichael Lange       }
12974eca1733SMichael Lange     }
12984eca1733SMichael Lange     ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr);
12994eca1733SMichael Lange     ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr);
13004eca1733SMichael Lange     ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr);
13014eca1733SMichael Lange   }
13021cf84007SMatthew G. Knepley   {
13031cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
13041cf84007SMatthew G. Knepley 
1305*b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1306*b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
13071cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
13081cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
13091cf84007SMatthew G. Knepley   }
13104eca1733SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
13114eca1733SMichael Lange   PetscFunctionReturn(0);
13124eca1733SMichael Lange }
13134eca1733SMichael Lange 
131498ba2d7fSLawrence Mitchell /*@
131598ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
131698ba2d7fSLawrence Mitchell 
131798ba2d7fSLawrence Mitchell   Input Parameters:
131898ba2d7fSLawrence Mitchell + dm - The DMPlex object
131998ba2d7fSLawrence Mitchell - flg - Balance the partition?
132098ba2d7fSLawrence Mitchell 
132198ba2d7fSLawrence Mitchell   Level: intermediate
132298ba2d7fSLawrence Mitchell 
132398ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance()
132498ba2d7fSLawrence Mitchell @*/
132598ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
132698ba2d7fSLawrence Mitchell {
132798ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
132898ba2d7fSLawrence Mitchell 
132998ba2d7fSLawrence Mitchell   PetscFunctionBegin;
133098ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
133198ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
133298ba2d7fSLawrence Mitchell }
133398ba2d7fSLawrence Mitchell 
133498ba2d7fSLawrence Mitchell /*@
133598ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
133698ba2d7fSLawrence Mitchell 
133798ba2d7fSLawrence Mitchell   Input Parameter:
133898ba2d7fSLawrence Mitchell + dm - The DMPlex object
133998ba2d7fSLawrence Mitchell 
134098ba2d7fSLawrence Mitchell   Output Parameter:
134198ba2d7fSLawrence Mitchell + flg - Balance the partition?
134298ba2d7fSLawrence Mitchell 
134398ba2d7fSLawrence Mitchell   Level: intermediate
134498ba2d7fSLawrence Mitchell 
134598ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance()
134698ba2d7fSLawrence Mitchell @*/
134798ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
134898ba2d7fSLawrence Mitchell {
134998ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
135098ba2d7fSLawrence Mitchell 
135198ba2d7fSLawrence Mitchell   PetscFunctionBegin;
135298ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
135398ba2d7fSLawrence Mitchell   PetscValidIntPointer(flg, 2);
135498ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
135598ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
135698ba2d7fSLawrence Mitchell }
135798ba2d7fSLawrence Mitchell 
1358f5bf2dbfSMichael Lange /*@C
1359f5bf2dbfSMichael Lange   DMPlexDerivePointSF - Build a point SF from an SF describing a point migration
1360f5bf2dbfSMichael Lange 
1361f5bf2dbfSMichael Lange   Input Parameter:
1362f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1363f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
13641627f6ccSMichael Lange . ownership   - Flag causing a vote to determine point ownership
1365f5bf2dbfSMichael Lange 
1366f5bf2dbfSMichael Lange   Output Parameter:
1367f5bf2dbfSMichael Lange - pointSF     - The star forest describing the point overlap in the remapped DM
1368f5bf2dbfSMichael Lange 
1369f5bf2dbfSMichael Lange   Level: developer
1370f5bf2dbfSMichael Lange 
1371f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
1372f5bf2dbfSMichael Lange @*/
1373f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1374f5bf2dbfSMichael Lange {
137523193802SMatthew G. Knepley   PetscMPIInt        rank, size;
13761627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1377f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1378f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1379f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1380f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
138123193802SMatthew G. Knepley   Vec                shifts;
1382cae3e4f3SLawrence Mitchell   const PetscInt     numShifts = 13759;
138323193802SMatthew G. Knepley   const PetscScalar *shift = NULL;
138423193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
138598ba2d7fSLawrence Mitchell   PetscBool          balance;
1386f5bf2dbfSMichael Lange   PetscErrorCode     ierr;
1387f5bf2dbfSMichael Lange 
1388f5bf2dbfSMichael Lange   PetscFunctionBegin;
1389f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1390f5bf2dbfSMichael Lange   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
1391ab0bc224SMatthew G. Knepley   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
1392f5bf2dbfSMichael Lange 
139398ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
1394f5bf2dbfSMichael Lange   ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr);
1395f5bf2dbfSMichael Lange   ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr);
1396f5bf2dbfSMichael Lange   if (ownership) {
139723193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
139898ba2d7fSLawrence Mitchell     if (balance) {
139923193802SMatthew G. Knepley       PetscRandom r;
140023193802SMatthew G. Knepley 
140123193802SMatthew G. Knepley       ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr);
1402cae3e4f3SLawrence Mitchell       ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr);
140323193802SMatthew G. Knepley       ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr);
140423193802SMatthew G. Knepley       ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr);
140523193802SMatthew G. Knepley       ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr);
140623193802SMatthew G. Knepley       ierr = VecSetRandom(shifts, r);CHKERRQ(ierr);
140723193802SMatthew G. Knepley       ierr = PetscRandomDestroy(&r);CHKERRQ(ierr);
140823193802SMatthew G. Knepley       ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr);
140923193802SMatthew G. Knepley     }
141023193802SMatthew G. Knepley 
141123193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1412f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
141323193802SMatthew G. Knepley       if (shiftDebug) {
1414e7bcd635SMatthew G. Knepley         ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr);
141523193802SMatthew G. Knepley       }
1416f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1417e7bcd635SMatthew G. Knepley       leafNodes[p].rank  = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size;
141843f7d02bSMichael Lange       leafNodes[p].index = p;
1419f5bf2dbfSMichael Lange     }
1420f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
14211627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1422f5bf2dbfSMichael Lange       rootNodes[p].rank  = -3;
1423f5bf2dbfSMichael Lange       rootNodes[p].index = -3;
1424f5bf2dbfSMichael Lange     }
1425f5bf2dbfSMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr);
1426f5bf2dbfSMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr);
142798ba2d7fSLawrence Mitchell     if (balance) {
1428c091126eSLawrence Mitchell       /* We've voted, now we need to get the rank.  When we're balancing the partition, the "rank" in rootNotes is not
1429c091126eSLawrence Mitchell        * the rank but rather (rank + random)%size.  So we do another reduction, voting the same way, but sending the
1430c091126eSLawrence Mitchell        * rank instead of the index. */
1431c091126eSLawrence Mitchell       PetscSFNode *rootRanks = NULL;
1432c091126eSLawrence Mitchell       ierr = PetscMalloc1(nroots, &rootRanks);CHKERRQ(ierr);
1433c091126eSLawrence Mitchell       for (p = 0; p < nroots; p++) {
1434c091126eSLawrence Mitchell         rootRanks[p].rank = -3;
1435c091126eSLawrence Mitchell         rootRanks[p].index = -3;
1436c091126eSLawrence Mitchell       }
1437c091126eSLawrence Mitchell       for (p = 0; p < nleaves; p++) leafNodes[p].index = rank;
1438c091126eSLawrence Mitchell       ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr);
1439c091126eSLawrence Mitchell       ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootRanks, MPI_MAXLOC);CHKERRQ(ierr);
1440c091126eSLawrence Mitchell       for (p = 0; p < nroots; p++) rootNodes[p].rank = rootRanks[p].index;
1441c091126eSLawrence Mitchell       ierr = PetscFree(rootRanks);CHKERRQ(ierr);
1442c091126eSLawrence Mitchell     }
1443f5bf2dbfSMichael Lange   } else {
1444f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1445f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1446f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1447f5bf2dbfSMichael Lange     };
1448f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1449f5bf2dbfSMichael Lange       /* Write new local id into old location */
1450f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
14516462276dSToby Isaac         rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1452f5bf2dbfSMichael Lange       }
1453f5bf2dbfSMichael Lange     }
1454f5bf2dbfSMichael Lange   }
1455f5bf2dbfSMichael Lange   ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1456f5bf2dbfSMichael Lange   ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1457f5bf2dbfSMichael Lange 
145823193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1459b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
146023193802SMatthew G. Knepley   }
14611627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr);
14621627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr);
1463f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1464b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
1465f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1466f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1467f5bf2dbfSMichael Lange       idx++;
1468f5bf2dbfSMichael Lange     }
1469f5bf2dbfSMichael Lange   }
147023193802SMatthew G. Knepley   if (shift) {
147123193802SMatthew G. Knepley     ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr);
147223193802SMatthew G. Knepley     ierr = VecDestroy(&shifts);CHKERRQ(ierr);
147323193802SMatthew G. Knepley   }
147423193802SMatthew G. Knepley   if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);}
1475f5bf2dbfSMichael Lange   ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr);
14761627f6ccSMichael Lange   ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr);
1477f5bf2dbfSMichael Lange   ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
1478f5bf2dbfSMichael Lange   ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr);
1479f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1480f5bf2dbfSMichael Lange }
1481f5bf2dbfSMichael Lange 
148215078cd4SMichael Lange /*@C
148315078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
148415078cd4SMichael Lange 
148583655b49SVáclav Hapla   Collective on DM and PetscSF
148683655b49SVáclav Hapla 
148715078cd4SMichael Lange   Input Parameter:
148815078cd4SMichael Lange + dm       - The source DMPlex object
14891627f6ccSMichael Lange . sf       - The star forest communication context describing the migration pattern
149015078cd4SMichael Lange 
149115078cd4SMichael Lange   Output Parameter:
149215078cd4SMichael Lange - targetDM - The target DMPlex object
149315078cd4SMichael Lange 
1494b9f40539SMichael Lange   Level: intermediate
149515078cd4SMichael Lange 
149615078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
149715078cd4SMichael Lange @*/
1498b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
149915078cd4SMichael Lange {
1500b9f40539SMichael Lange   MPI_Comm               comm;
1501cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1502b9f40539SMichael Lange   PetscSF                sfPoint;
150315078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1504ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
1505b9f40539SMichael Lange   PetscBool              flg;
150615078cd4SMichael Lange   PetscErrorCode         ierr;
150715078cd4SMichael Lange 
150815078cd4SMichael Lange   PetscFunctionBegin;
150915078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15101b858b30SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
1511b9f40539SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
151215078cd4SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
151315078cd4SMichael Lange   ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr);
1514cc1750acSStefano Zampini   ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr);
1515cc1750acSStefano Zampini   ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr);
151615078cd4SMichael Lange 
1517bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
1518b9f40539SMichael Lange   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
1519b9f40539SMichael Lange   ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
1520bfb0467fSMichael Lange   if (nroots >= 0) {
1521b9f40539SMichael Lange     IS        isOriginal;
1522ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1523ac04eaf7SToby Isaac     PetscInt  *numbering_orig, *numbering_new;
1524367003a6SStefano Zampini 
1525b9f40539SMichael Lange     /* Get the original point numbering */
1526b9f40539SMichael Lange     ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr);
1527b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal);CHKERRQ(ierr);
1528b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr);
1529b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1530b9f40539SMichael Lange     /* Convert to positive global numbers */
1531b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1532b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
1533b9f40539SMichael Lange     ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
1534b9f40539SMichael Lange     ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr);
1535b9f40539SMichael Lange     ierr = PetscSFBcastBegin(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr);
1536b9f40539SMichael Lange     ierr = PetscSFBcastEnd(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr);
1537b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, (const PetscInt*) numbering_new, PETSC_OWN_POINTER, &ltogMigration);CHKERRQ(ierr);
1538b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1539b9f40539SMichael Lange     ierr = ISDestroy(&isOriginal);CHKERRQ(ierr);
154015078cd4SMichael Lange   } else {
1541bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
154215078cd4SMichael Lange     ierr = ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration);CHKERRQ(ierr);
154315078cd4SMichael Lange   }
1544c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
1545b9f40539SMichael Lange   if (flg) {
1546b9f40539SMichael Lange     ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr);
1547b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr);
1548b9f40539SMichael Lange   }
154915078cd4SMichael Lange   /* Migrate DM data to target DM */
1550ac04eaf7SToby Isaac   ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
155115078cd4SMichael Lange   ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr);
15520dc1530dSSander Arens   ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr);
155315078cd4SMichael Lange   ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr);
155408633170SToby Isaac   ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
1555ac04eaf7SToby Isaac   ierr = ISLocalToGlobalMappingDestroy(&ltogOriginal);CHKERRQ(ierr);
1556302440fdSBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&ltogMigration);CHKERRQ(ierr);
15571b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
155815078cd4SMichael Lange   PetscFunctionReturn(0);
155915078cd4SMichael Lange }
156015078cd4SMichael Lange 
15613b8f15a2SMatthew G. Knepley /*@C
156270034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
156370034214SMatthew G. Knepley 
156483655b49SVáclav Hapla   Collective on DM
156570034214SMatthew G. Knepley 
156670034214SMatthew G. Knepley   Input Parameter:
156770034214SMatthew G. Knepley + dm  - The original DMPlex object
156870034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
156970034214SMatthew G. Knepley 
157070034214SMatthew G. Knepley   Output Parameter:
1571f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1572f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
157370034214SMatthew G. Knepley 
1574f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
157570034214SMatthew G. Knepley 
1576*b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
157770034214SMatthew G. Knepley   representation on the mesh.
157870034214SMatthew G. Knepley 
157970034214SMatthew G. Knepley   Level: intermediate
158070034214SMatthew G. Knepley 
158170034214SMatthew G. Knepley .keywords: mesh, elements
1582*b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency()
158370034214SMatthew G. Knepley @*/
158480cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
158570034214SMatthew G. Knepley {
158670034214SMatthew G. Knepley   MPI_Comm               comm;
158715078cd4SMichael Lange   PetscPartitioner       partitioner;
1588f8987ae8SMichael Lange   IS                     cellPart;
1589f8987ae8SMichael Lange   PetscSection           cellPartSection;
1590cf86098cSMatthew G. Knepley   DM                     dmCoord;
1591f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
159243f7d02bSMichael Lange   PetscSF                sfProcess, sfMigration, sfStratified, sfPoint;
159398ba2d7fSLawrence Mitchell   PetscBool              flg, balance;
15949852e123SBarry Smith   PetscMPIInt            rank, size, p;
159570034214SMatthew G. Knepley   PetscErrorCode         ierr;
159670034214SMatthew G. Knepley 
159770034214SMatthew G. Knepley   PetscFunctionBegin;
159870034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1599d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1600d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf,3);
1601d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel,4);
160270034214SMatthew G. Knepley 
16030c86c063SLisandro Dalcin   if (sf) *sf = NULL;
16040c86c063SLisandro Dalcin   *dmParallel = NULL;
160570034214SMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
160670034214SMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
16079852e123SBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
16080c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
160970034214SMatthew G. Knepley 
16100c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
161115078cd4SMichael Lange   /* Create cell partition */
161267eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
161377623264SMatthew G. Knepley   ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr);
161415078cd4SMichael Lange   ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr);
161515078cd4SMichael Lange   ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr);
1616f8987ae8SMichael Lange   {
1617f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1618f8987ae8SMichael Lange     PetscInt proc, pStart, pEnd, npoints, poffset;
1619f8987ae8SMichael Lange     const PetscInt *points;
1620d67d17b1SMatthew G. Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr);
1621f8987ae8SMichael Lange     ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr);
1622f8987ae8SMichael Lange     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1623f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
1624f8987ae8SMichael Lange       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1625f8987ae8SMichael Lange       ierr = PetscSectionGetOffset(cellPartSection, proc, &poffset);CHKERRQ(ierr);
1626f8987ae8SMichael Lange       for (p = poffset; p < poffset+npoints; p++) {
1627f8987ae8SMichael Lange         ierr = DMLabelSetValue(lblPartition, points[p], proc);CHKERRQ(ierr);
162870034214SMatthew G. Knepley       }
1629f8987ae8SMichael Lange     }
1630f8987ae8SMichael Lange     ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr);
1631f8987ae8SMichael Lange   }
1632f8987ae8SMichael Lange   ierr = DMPlexPartitionLabelClosure(dm, lblPartition);CHKERRQ(ierr);
1633f8987ae8SMichael Lange   {
1634f8987ae8SMichael Lange     /* Build a global process SF */
1635f8987ae8SMichael Lange     PetscSFNode *remoteProc;
16369852e123SBarry Smith     ierr = PetscMalloc1(size, &remoteProc);CHKERRQ(ierr);
16379852e123SBarry Smith     for (p = 0; p < size; ++p) {
1638f8987ae8SMichael Lange       remoteProc[p].rank  = p;
1639f8987ae8SMichael Lange       remoteProc[p].index = rank;
1640f8987ae8SMichael Lange     }
1641f8987ae8SMichael Lange     ierr = PetscSFCreate(comm, &sfProcess);CHKERRQ(ierr);
1642f8987ae8SMichael Lange     ierr = PetscObjectSetName((PetscObject) sfProcess, "Process SF");CHKERRQ(ierr);
16439852e123SBarry Smith     ierr = PetscSFSetGraph(sfProcess, size, size, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr);
1644f8987ae8SMichael Lange   }
1645d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr);
1646f8987ae8SMichael Lange   ierr = DMPlexPartitionLabelInvert(dm, lblPartition, sfProcess, lblMigration);CHKERRQ(ierr);
1647302440fdSBarry Smith   ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr);
164843f7d02bSMichael Lange   /* Stratify the SF in case we are migrating an already parallel plex */
164943f7d02bSMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr);
165043f7d02bSMichael Lange   ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
165143f7d02bSMichael Lange   sfMigration = sfStratified;
165267eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1653c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
165470034214SMatthew G. Knepley   if (flg) {
1655f8987ae8SMichael Lange     ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1656f8987ae8SMichael Lange     ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
165770034214SMatthew G. Knepley   }
1658f8987ae8SMichael Lange 
165915078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
166070034214SMatthew G. Knepley   ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr);
166170034214SMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr);
1662b9f40539SMichael Lange   ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr);
166370034214SMatthew G. Knepley 
1664a157612eSMichael Lange   /* Build the point SF without overlap */
166598ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
166698ba2d7fSLawrence Mitchell   ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr);
16671627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr);
1668f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr);
1669cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr);
1670cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1671f5bf2dbfSMichael Lange   if (flg) {ierr = PetscSFView(sfPoint, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);}
167270034214SMatthew G. Knepley 
1673a157612eSMichael Lange   if (overlap > 0) {
167415078cd4SMichael Lange     DM                 dmOverlap;
167515078cd4SMichael Lange     PetscInt           nroots, nleaves;
167615078cd4SMichael Lange     PetscSFNode       *newRemote;
167715078cd4SMichael Lange     const PetscSFNode *oldRemote;
167815078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1679a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
1680b9f40539SMichael Lange     ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr);
1681a157612eSMichael Lange     ierr = DMDestroy(dmParallel);CHKERRQ(ierr);
1682a157612eSMichael Lange     *dmParallel = dmOverlap;
1683c389ea9fSToby Isaac     if (flg) {
16843d822a50SMichael Lange       ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr);
168515078cd4SMichael Lange       ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr);
1686c389ea9fSToby Isaac     }
168743331d4aSMichael Lange 
1688f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
1689f8987ae8SMichael Lange     ierr = PetscSFGetGraph(sfMigration, &nroots, NULL, NULL, &oldRemote);CHKERRQ(ierr);
169015078cd4SMichael Lange     ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
169143331d4aSMichael Lange     ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr);
169215078cd4SMichael Lange     ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
169315078cd4SMichael Lange     ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
169415078cd4SMichael Lange     ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr);
169515078cd4SMichael Lange     ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
169615078cd4SMichael Lange     ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1697f8987ae8SMichael Lange     ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
169815078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1699c389ea9fSToby Isaac   }
1700bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
1701f8987ae8SMichael Lange   ierr = PetscSFDestroy(&sfProcess);CHKERRQ(ierr);
1702f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr);
1703f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr);
17044eca1733SMichael Lange   ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr);
17054eca1733SMichael Lange   ierr = ISDestroy(&cellPart);CHKERRQ(ierr);
1706721cbd76SMatthew G. Knepley   /* Copy BC */
1707a6ba4734SToby Isaac   ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr);
170866fe0bfeSMatthew G. Knepley   /* Create sfNatural */
170966fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
171066fe0bfeSMatthew G. Knepley     PetscSection section;
171166fe0bfeSMatthew G. Knepley 
1712e87a4003SBarry Smith     ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
17130c1f158bSMatthew G. Knepley     ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr);
17140e663481SBlaise Bourdin     ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr);
171566fe0bfeSMatthew G. Knepley   }
1716721cbd76SMatthew G. Knepley   /* Cleanup */
1717f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
1718f8987ae8SMichael Lange   else    {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);}
1719f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
172070034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
172170034214SMatthew G. Knepley   PetscFunctionReturn(0);
172270034214SMatthew G. Knepley }
1723a157612eSMichael Lange 
1724a157612eSMichael Lange /*@C
172524cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1726a157612eSMichael Lange 
172783655b49SVáclav Hapla   Collective on DM
1728a157612eSMichael Lange 
1729a157612eSMichael Lange   Input Parameter:
1730a157612eSMichael Lange + dm  - The non-overlapping distrbuted DMPlex object
17310c86c063SLisandro Dalcin - overlap - The overlap of partitions
1732a157612eSMichael Lange 
1733a157612eSMichael Lange   Output Parameter:
1734a157612eSMichael Lange + sf - The PetscSF used for point distribution
1735a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1736a157612eSMichael Lange 
1737a157612eSMichael Lange   Note: If the mesh was not distributed, the return value is NULL.
1738a157612eSMichael Lange 
1739*b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1740a157612eSMichael Lange   representation on the mesh.
1741a157612eSMichael Lange 
1742a157612eSMichael Lange   Level: intermediate
1743a157612eSMichael Lange 
1744a157612eSMichael Lange .keywords: mesh, elements
1745*b0441da4SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMSetAdjacency()
1746a157612eSMichael Lange @*/
1747b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1748a157612eSMichael Lange {
1749a157612eSMichael Lange   MPI_Comm               comm;
17503567eaeeSMatthew G. Knepley   PetscMPIInt            size, rank;
1751a157612eSMichael Lange   PetscSection           rootSection, leafSection;
1752a157612eSMichael Lange   IS                     rootrank, leafrank;
1753cf86098cSMatthew G. Knepley   DM                     dmCoord;
1754a9f1d5b2SMichael Lange   DMLabel                lblOverlap;
1755f5bf2dbfSMichael Lange   PetscSF                sfOverlap, sfStratified, sfPoint;
1756a157612eSMichael Lange   PetscErrorCode         ierr;
1757a157612eSMichael Lange 
1758a157612eSMichael Lange   PetscFunctionBegin;
1759a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1760a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1761a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1762a157612eSMichael Lange 
17630c86c063SLisandro Dalcin   if (sf) *sf = NULL;
17640c86c063SLisandro Dalcin   *dmOverlap  = NULL;
1765a157612eSMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
17663567eaeeSMatthew G. Knepley   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
1767a157612eSMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
17680c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1769a157612eSMichael Lange 
17700c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1771a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
177267eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1773a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr);
1774a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr);
1775a157612eSMichael Lange   ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr);
1776a9f1d5b2SMichael Lange   ierr = DMPlexCreateOverlap(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr);
1777a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
1778a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr);
1779a9f1d5b2SMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr);
1780a9f1d5b2SMichael Lange   ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1781a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
1782a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr);
1783a9f1d5b2SMichael Lange   ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr);
1784a9f1d5b2SMichael Lange 
178515fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr);
178615fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr);
178715fff7beSMatthew G. Knepley   ierr = ISDestroy(&rootrank);CHKERRQ(ierr);
178815fff7beSMatthew G. Knepley   ierr = ISDestroy(&leafrank);CHKERRQ(ierr);
178967eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1790a157612eSMichael Lange 
1791a157612eSMichael Lange   /* Build the overlapping DM */
1792a157612eSMichael Lange   ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr);
1793a157612eSMichael Lange   ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr);
1794a9f1d5b2SMichael Lange   ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr);
1795f5bf2dbfSMichael Lange   /* Build the new point SF */
17961627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
1797f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr);
1798cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr);
1799cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1800f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1801a157612eSMichael Lange   /* Cleanup overlap partition */
1802a9f1d5b2SMichael Lange   ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr);
1803a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
1804a9f1d5b2SMichael Lange   else    {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);}
18051b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1806a157612eSMichael Lange   PetscFunctionReturn(0);
1807a157612eSMichael Lange }
18086462276dSToby Isaac 
18096462276dSToby Isaac /*@C
18106462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
18116462276dSToby Isaac   root process of the original's communicator.
18126462276dSToby Isaac 
181383655b49SVáclav Hapla   Collective on DM
181483655b49SVáclav Hapla 
18156462276dSToby Isaac   Input Parameters:
18166462276dSToby Isaac . dm - the original DMPlex object
18176462276dSToby Isaac 
18186462276dSToby Isaac   Output Parameters:
1819a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1820a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
18216462276dSToby Isaac 
18226462276dSToby Isaac   Level: intermediate
18236462276dSToby Isaac 
18246462276dSToby Isaac .keywords: mesh
18256462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM()
18266462276dSToby Isaac @*/
1827a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
18286462276dSToby Isaac {
18296462276dSToby Isaac   MPI_Comm       comm;
18306462276dSToby Isaac   PetscMPIInt    size;
18316462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
18326462276dSToby Isaac   PetscErrorCode ierr;
18336462276dSToby Isaac 
18346462276dSToby Isaac   PetscFunctionBegin;
18356462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
18360c86c063SLisandro Dalcin   PetscValidPointer(gatherMesh,2);
18370c86c063SLisandro Dalcin   *gatherMesh = NULL;
1838a13df41bSStefano Zampini   if (sf) *sf = NULL;
18396462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
18406462276dSToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
18416462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
18426462276dSToby Isaac   ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr);
18436462276dSToby Isaac   ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr);
18446462276dSToby Isaac   ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr);
18456462276dSToby Isaac   ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr);
18466462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr);
1847a13df41bSStefano Zampini   ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr);
1848a13df41bSStefano Zampini 
18496462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr);
18506462276dSToby Isaac   ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr);
18516462276dSToby Isaac   ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr);
18526462276dSToby Isaac   PetscFunctionReturn(0);
18536462276dSToby Isaac }
18546462276dSToby Isaac 
18556462276dSToby Isaac /*@C
18566462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
18576462276dSToby Isaac 
185883655b49SVáclav Hapla   Collective on DM
185983655b49SVáclav Hapla 
18606462276dSToby Isaac   Input Parameters:
18616462276dSToby Isaac . dm - the original DMPlex object
18626462276dSToby Isaac 
18636462276dSToby Isaac   Output Parameters:
1864a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1865a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
18666462276dSToby Isaac 
18676462276dSToby Isaac   Level: intermediate
18686462276dSToby Isaac 
18696462276dSToby Isaac .keywords: mesh
18706462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM()
18716462276dSToby Isaac @*/
1872a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
18736462276dSToby Isaac {
18746462276dSToby Isaac   MPI_Comm       comm;
18756462276dSToby Isaac   PetscMPIInt    size, rank;
18766462276dSToby Isaac   PetscInt       pStart, pEnd, p;
18776462276dSToby Isaac   PetscInt       numPoints = -1;
1878a13df41bSStefano Zampini   PetscSF        migrationSF, sfPoint, gatherSF;
18796462276dSToby Isaac   DM             gatherDM, dmCoord;
18806462276dSToby Isaac   PetscSFNode    *points;
18816462276dSToby Isaac   PetscErrorCode ierr;
18826462276dSToby Isaac 
18836462276dSToby Isaac   PetscFunctionBegin;
18846462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
18850c86c063SLisandro Dalcin   PetscValidPointer(redundantMesh,2);
18860c86c063SLisandro Dalcin   *redundantMesh = NULL;
18876462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
18886462276dSToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
188968dbc166SMatthew G. Knepley   if (size == 1) {
189068dbc166SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
189168dbc166SMatthew G. Knepley     *redundantMesh = dm;
1892a13df41bSStefano Zampini     if (sf) *sf = NULL;
189368dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
189468dbc166SMatthew G. Knepley   }
1895a13df41bSStefano Zampini   ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr);
18966462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
18976462276dSToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
18986462276dSToby Isaac   ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr);
18996462276dSToby Isaac   numPoints = pEnd - pStart;
19006462276dSToby Isaac   ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRQ(ierr);
19016462276dSToby Isaac   ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr);
19026462276dSToby Isaac   ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr);
19036462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
19046462276dSToby Isaac     points[p].index = p;
19056462276dSToby Isaac     points[p].rank  = 0;
19066462276dSToby Isaac   }
19076462276dSToby Isaac   ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr);
19086462276dSToby Isaac   ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr);
19096462276dSToby Isaac   ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr);
19106462276dSToby Isaac   ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr);
19116462276dSToby Isaac   ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
19126462276dSToby Isaac   ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr);
19136462276dSToby Isaac   ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr);
19146462276dSToby Isaac   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
19156462276dSToby Isaac   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1916a13df41bSStefano Zampini   if (sf) {
1917a13df41bSStefano Zampini     PetscSF tsf;
1918a13df41bSStefano Zampini 
1919a13df41bSStefano Zampini     ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr);
1920a13df41bSStefano Zampini     ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr);
1921a13df41bSStefano Zampini     ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr);
1922a13df41bSStefano Zampini   }
19236462276dSToby Isaac   ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr);
1924a13df41bSStefano Zampini   ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr);
19256462276dSToby Isaac   ierr = DMDestroy(&gatherDM);CHKERRQ(ierr);
19266462276dSToby Isaac   PetscFunctionReturn(0);
19276462276dSToby Isaac }
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