xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision bbcf679c7ce315810b13005931dd3a7fb75b5053)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>  /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()`
203c1f0c11SLawrence Mitchell @*/
21d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetAdjacencyUser(DM dm, PetscErrorCode (*user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void *ctx)
22d71ae5a4SJacob Faibussowitsch {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency    = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
39ef1023bdSBarry Smith + user    - The callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()`
453c1f0c11SLawrence Mitchell @*/
46d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void **ctx)
47d71ae5a4SJacob Faibussowitsch {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
678b0b4c70SToby Isaac @*/
68d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
69d71ae5a4SJacob Faibussowitsch {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *)dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
908b0b4c70SToby Isaac @*/
91d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
92d71ae5a4SJacob Faibussowitsch {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *)dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
97064a246eSJacob Faibussowitsch   PetscValidBoolPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
102d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
103d71ae5a4SJacob Faibussowitsch {
10470034214SMatthew G. Knepley   const PetscInt *cone   = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley 
10770034214SMatthew G. Knepley   PetscFunctionBeginHot;
1089566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, p, &coneSize));
1099566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCone(dm, p, &cone));
1104b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1114b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c - 1];
11270034214SMatthew G. Knepley     const PetscInt *support = NULL;
11370034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11470034214SMatthew G. Knepley 
1159566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
1169566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, point, &support));
11770034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
118527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]), 0); ++q) {
11970034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12070034214SMatthew G. Knepley       }
12163a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
12270034214SMatthew G. Knepley     }
12370034214SMatthew G. Knepley   }
12470034214SMatthew G. Knepley   *adjSize = numAdj;
1253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12670034214SMatthew G. Knepley }
12770034214SMatthew G. Knepley 
128d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
129d71ae5a4SJacob Faibussowitsch {
13070034214SMatthew G. Knepley   const PetscInt *support = NULL;
13170034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, supportSize, s;
13270034214SMatthew G. Knepley 
13370034214SMatthew G. Knepley   PetscFunctionBeginHot;
1349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupportSize(dm, p, &supportSize));
1359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupport(dm, p, &support));
1364b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1374b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s - 1];
13870034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
13970034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14070034214SMatthew G. Knepley 
1419566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
1429566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, point, &cone));
14370034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
144527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]), 0); ++q) {
14570034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14670034214SMatthew G. Knepley       }
14763a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
14870034214SMatthew G. Knepley     }
14970034214SMatthew G. Knepley   }
15070034214SMatthew G. Knepley   *adjSize = numAdj;
1513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15270034214SMatthew G. Knepley }
15370034214SMatthew G. Knepley 
154d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
155d71ae5a4SJacob Faibussowitsch {
15670034214SMatthew G. Knepley   PetscInt *star   = NULL;
15770034214SMatthew G. Knepley   PetscInt  numAdj = 0, maxAdjSize = *adjSize, starSize, s;
15870034214SMatthew G. Knepley 
15970034214SMatthew G. Knepley   PetscFunctionBeginHot;
1609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star));
16170034214SMatthew G. Knepley   for (s = 0; s < starSize * 2; s += 2) {
16270034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16370034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16470034214SMatthew G. Knepley 
1659566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure));
16670034214SMatthew G. Knepley     for (c = 0; c < closureSize * 2; c += 2) {
167527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]), 0); ++q) {
16870034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
16970034214SMatthew G. Knepley       }
17063a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
17170034214SMatthew G. Knepley     }
1729566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure));
17370034214SMatthew G. Knepley   }
1749566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star));
17570034214SMatthew G. Knepley   *adjSize = numAdj;
1763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17770034214SMatthew G. Knepley }
17870034214SMatthew G. Knepley 
179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
180d71ae5a4SJacob Faibussowitsch {
18179bad331SMatthew G. Knepley   static PetscInt asiz       = 0;
1828b0b4c70SToby Isaac   PetscInt        maxAnchors = 1;
1838b0b4c70SToby Isaac   PetscInt        aStart = -1, aEnd = -1;
1848b0b4c70SToby Isaac   PetscInt        maxAdjSize;
1858b0b4c70SToby Isaac   PetscSection    aSec = NULL;
1868b0b4c70SToby Isaac   IS              aIS  = NULL;
1878b0b4c70SToby Isaac   const PetscInt *anchors;
1883c1f0c11SLawrence Mitchell   DM_Plex        *mesh = (DM_Plex *)dm->data;
18970034214SMatthew G. Knepley 
19070034214SMatthew G. Knepley   PetscFunctionBeginHot;
1915b317d89SToby Isaac   if (useAnchors) {
1929566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAnchors(dm, &aSec, &aIS));
1938b0b4c70SToby Isaac     if (aSec) {
1949566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetMaxDof(aSec, &maxAnchors));
19524c766afSToby Isaac       maxAnchors = PetscMax(1, maxAnchors);
1969566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(aSec, &aStart, &aEnd));
1979566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(aIS, &anchors));
1988b0b4c70SToby Isaac     }
1998b0b4c70SToby Isaac   }
20079bad331SMatthew G. Knepley   if (!*adj) {
20124c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20279bad331SMatthew G. Knepley 
2039566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
2049566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(dm, &depth));
205412e9a14SMatthew G. Knepley     depth = PetscMax(depth, -depth);
2069566063dSJacob Faibussowitsch     PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS));
20724c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC, depth + 1) - 1) / (maxC - 1)) : depth + 1;
20824c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS, depth + 1) - 1) / (maxS - 1)) : depth + 1;
20924c766afSToby Isaac     asiz          = PetscMax(PetscPowInt(maxS, depth) * coneSeries, PetscPowInt(maxC, depth) * supportSeries);
2108b0b4c70SToby Isaac     asiz *= maxAnchors;
21124c766afSToby Isaac     asiz = PetscMin(asiz, pEnd - pStart);
2129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(asiz, adj));
21379bad331SMatthew G. Knepley   }
21479bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2158b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2163c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
2179566063dSJacob Faibussowitsch     PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx));
2183c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
2199566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj));
22070034214SMatthew G. Knepley   } else if (useCone) {
2219566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj));
22270034214SMatthew G. Knepley   } else {
2239566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj));
22470034214SMatthew G. Knepley   }
2255b317d89SToby Isaac   if (useAnchors && aSec) {
2268b0b4c70SToby Isaac     PetscInt  origSize = *adjSize;
2278b0b4c70SToby Isaac     PetscInt  numAdj   = origSize;
2288b0b4c70SToby Isaac     PetscInt  i        = 0, j;
2298b0b4c70SToby Isaac     PetscInt *orig     = *adj;
2308b0b4c70SToby Isaac 
2318b0b4c70SToby Isaac     while (i < origSize) {
2328b0b4c70SToby Isaac       PetscInt p    = orig[i];
2338b0b4c70SToby Isaac       PetscInt aDof = 0;
2348b0b4c70SToby Isaac 
23548a46eb9SPierre Jolivet       if (p >= aStart && p < aEnd) PetscCall(PetscSectionGetDof(aSec, p, &aDof));
2368b0b4c70SToby Isaac       if (aDof) {
2378b0b4c70SToby Isaac         PetscInt aOff;
2388b0b4c70SToby Isaac         PetscInt s, q;
2398b0b4c70SToby Isaac 
240ad540459SPierre Jolivet         for (j = i + 1; j < numAdj; j++) orig[j - 1] = orig[j];
2418b0b4c70SToby Isaac         origSize--;
2428b0b4c70SToby Isaac         numAdj--;
2439566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(aSec, p, &aOff));
2448b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
245527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff + s]), 0); ++q) {
2468b0b4c70SToby Isaac             if (anchors[aOff + s] == orig[q]) break;
2478b0b4c70SToby Isaac           }
24863a3b9bcSJacob Faibussowitsch           PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
2498b0b4c70SToby Isaac         }
2509371c9d4SSatish Balay       } else {
2518b0b4c70SToby Isaac         i++;
2528b0b4c70SToby Isaac       }
2538b0b4c70SToby Isaac     }
2548b0b4c70SToby Isaac     *adjSize = numAdj;
2559566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(aIS, &anchors));
2568b0b4c70SToby Isaac   }
2573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25870034214SMatthew G. Knepley }
25970034214SMatthew G. Knepley 
26070034214SMatthew G. Knepley /*@
26170034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
26270034214SMatthew G. Knepley 
26370034214SMatthew G. Knepley   Input Parameters:
26470034214SMatthew G. Knepley + dm - The DM object
2656b867d5aSJose E. Roman - p  - The point
26670034214SMatthew G. Knepley 
2676b867d5aSJose E. Roman   Input/Output Parameters:
2686b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE;
2696b867d5aSJose E. Roman             on output the number of adjacent points
2706b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize;
2716b867d5aSJose E. Roman         on output contains the adjacent points
27270034214SMatthew G. Knepley 
27370034214SMatthew G. Knepley   Level: advanced
27470034214SMatthew G. Knepley 
27595452b02SPatrick Sanan   Notes:
27695452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
27770034214SMatthew G. Knepley 
278db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()`
27970034214SMatthew G. Knepley @*/
280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
281d71ae5a4SJacob Faibussowitsch {
2821cf84007SMatthew G. Knepley   PetscBool useCone, useClosure, useAnchors;
28370034214SMatthew G. Knepley 
28470034214SMatthew G. Knepley   PetscFunctionBeginHot;
28570034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
286dadcf809SJacob Faibussowitsch   PetscValidIntPointer(adjSize, 3);
28770034214SMatthew G. Knepley   PetscValidPointer(adj, 4);
2889566063dSJacob Faibussowitsch   PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
2899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
2909566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj));
2913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29270034214SMatthew G. Knepley }
29308633170SToby Isaac 
294b0a623aaSMatthew G. Knepley /*@
295b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
296b0a623aaSMatthew G. Knepley 
297d083f849SBarry Smith   Collective on dm
298b0a623aaSMatthew G. Knepley 
299b0a623aaSMatthew G. Knepley   Input Parameters:
300b0a623aaSMatthew G. Knepley + dm      - The DM
3016b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity
3026b867d5aSJose E. Roman . rootRankSection -
3036b867d5aSJose E. Roman . rootRanks -
3046b867d5aSJose E. Roman . leftRankSection -
3056b867d5aSJose E. Roman - leafRanks -
306b0a623aaSMatthew G. Knepley 
307b0a623aaSMatthew G. Knepley   Output Parameters:
308b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
309b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
310b0a623aaSMatthew G. Knepley 
311b0a623aaSMatthew G. Knepley   Level: developer
312b0a623aaSMatthew G. Knepley 
313db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()`
314b0a623aaSMatthew G. Knepley @*/
315d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
316d71ae5a4SJacob Faibussowitsch {
317b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
318b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
319b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
320b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
321b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
322b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
323b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3249852e123SBarry Smith   PetscMPIInt        size, proc, rank;
325b0a623aaSMatthew G. Knepley 
326b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
327b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
328b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
329ad540459SPierre Jolivet   if (processRanks) PetscValidPointer(processRanks, 7);
330ad540459SPierre Jolivet   if (sfProcess) PetscValidPointer(sfProcess, 8);
3319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
3329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
3339566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints));
3349566063dSJacob Faibussowitsch   PetscCall(PetscBTCreate(size, &neighbors));
3359566063dSJacob Faibussowitsch   PetscCall(PetscBTMemzero(size, neighbors));
336b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
3379566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootRanks, &nranks));
339b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
340b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
341b0a623aaSMatthew G. Knepley 
3429566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof));
3439566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff));
3449566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n]));
345b0a623aaSMatthew G. Knepley   }
3469566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootRanks, &nranks));
347b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
3489566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd));
3499566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafRanks, &nranks));
350b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
351b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
352b0a623aaSMatthew G. Knepley 
3539566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof));
3549566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff));
3559566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n]));
356b0a623aaSMatthew G. Knepley   }
3579566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafRanks, &nranks));
358b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
3593ba16761SJacob Faibussowitsch   for (l = 0; l < numLeaves; ++l) PetscCall(PetscBTSet(neighbors, remotePoints[l].rank));
360b0a623aaSMatthew G. Knepley   /* Calculate edges */
3613ba16761SJacob Faibussowitsch   PetscCall(PetscBTClear(neighbors, rank));
3629371c9d4SSatish Balay   for (proc = 0, numNeighbors = 0; proc < size; ++proc) {
3639371c9d4SSatish Balay     if (PetscBTLookup(neighbors, proc)) ++numNeighbors;
3649371c9d4SSatish Balay   }
3659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &ranksNew));
3669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &localPointsNew));
3679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew));
3689852e123SBarry Smith   for (proc = 0, n = 0; proc < size; ++proc) {
369b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
370b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
371b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
372b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
373b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
374b0a623aaSMatthew G. Knepley       ++n;
375b0a623aaSMatthew G. Knepley     }
376b0a623aaSMatthew G. Knepley   }
3779566063dSJacob Faibussowitsch   PetscCall(PetscBTDestroy(&neighbors));
3789566063dSJacob Faibussowitsch   if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks));
3799566063dSJacob Faibussowitsch   else PetscCall(PetscFree(ranksNew));
380b0a623aaSMatthew G. Knepley   if (sfProcess) {
3819566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess));
3829566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*sfProcess, "Two-Sided Process SF"));
3839566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(*sfProcess));
3849566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER));
385b0a623aaSMatthew G. Knepley   }
3863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
387b0a623aaSMatthew G. Knepley }
388b0a623aaSMatthew G. Knepley 
389b0a623aaSMatthew G. Knepley /*@
390b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
391b0a623aaSMatthew G. Knepley 
392d083f849SBarry Smith   Collective on dm
393b0a623aaSMatthew G. Knepley 
394b0a623aaSMatthew G. Knepley   Input Parameter:
395b0a623aaSMatthew G. Knepley . dm - The DM
396b0a623aaSMatthew G. Knepley 
397b0a623aaSMatthew G. Knepley   Output Parameters:
398b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
399b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
400b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
401b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
402b0a623aaSMatthew G. Knepley 
403b0a623aaSMatthew G. Knepley   Level: developer
404b0a623aaSMatthew G. Knepley 
405db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
406b0a623aaSMatthew G. Knepley @*/
407d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
408d71ae5a4SJacob Faibussowitsch {
409b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
410b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
411b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
412b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
413b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
414b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
415b0a623aaSMatthew G. Knepley 
416b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4179566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4189566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
4199566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
4209566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
421b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
4229566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)rootSection, "Root Section"));
4239566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd));
4249566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree));
4259566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree));
4269566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p - pStart]));
4279566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(rootSection));
428b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
4299566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(rootSection, &nedges));
4309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pEnd - pStart, &myrank));
4319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nedges, &remoterank));
432b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd - pStart; ++p) myrank[p] = rank;
4339566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank));
4349566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank));
4359566063dSJacob Faibussowitsch   PetscCall(PetscFree(myrank));
4369566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank));
437b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
4389566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)leafSection, "Leaf Section"));
4399566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank));
4403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
441b0a623aaSMatthew G. Knepley }
442b0a623aaSMatthew G. Knepley 
443c506a872SMatthew G. Knepley #if 0
444c506a872SMatthew G. Knepley static PetscErrorCode DMPlexCopyOverlapLabels(DM dm, DM ndm)
445c506a872SMatthew G. Knepley {
446c506a872SMatthew G. Knepley   DM_Plex *mesh  = (DM_Plex *) dm->data;
447c506a872SMatthew G. Knepley   DM_Plex *nmesh = (DM_Plex *) ndm->data;
448c506a872SMatthew G. Knepley 
449c506a872SMatthew G. Knepley   PetscFunctionBegin;
450c506a872SMatthew G. Knepley   if (mesh->numOvLabels) {
451c506a872SMatthew G. Knepley     const char *name;
452c506a872SMatthew G. Knepley     PetscInt    l;
453c506a872SMatthew G. Knepley 
454c506a872SMatthew G. Knepley     nmesh->numOvLabels = mesh->numOvLabels;
455c506a872SMatthew G. Knepley     for (l = 0; l < mesh->numOvLabels; ++l) {
456c506a872SMatthew G. Knepley       PetscCall(PetscObjectGetName((PetscObject) mesh->ovLabels[l], &name));
457c506a872SMatthew G. Knepley       PetscCall(DMGetLabel(ndm, name, &nmesh->ovLabels[l]));
458c506a872SMatthew G. Knepley       nmesh->ovValues[l] = mesh->ovValues[l];
459c506a872SMatthew G. Knepley     }
460c506a872SMatthew G. Knepley     PetscCall(PetscObjectGetName((PetscObject) mesh->ovExLabel, &name));
461c506a872SMatthew G. Knepley     PetscCall(DMGetLabel(ndm, name, &nmesh->ovExLabel));
462c506a872SMatthew G. Knepley     nmesh->ovExValue = mesh->ovExValue;
463c506a872SMatthew G. Knepley   }
4643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
465c506a872SMatthew G. Knepley }
466c506a872SMatthew G. Knepley #endif
467c506a872SMatthew G. Knepley 
468278397a0SMatthew G. Knepley /*@C
469c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes
470b0a623aaSMatthew G. Knepley 
471d083f849SBarry Smith   Collective on dm
472b0a623aaSMatthew G. Knepley 
473b0a623aaSMatthew G. Knepley   Input Parameters:
474b0a623aaSMatthew G. Knepley + dm          - The DM
47524d039d7SMichael Lange . levels      - Number of overlap levels
476b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
477b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
478b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
479b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
480b0a623aaSMatthew G. Knepley 
481064ec1f3Sprj-   Output Parameter:
482b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
483b0a623aaSMatthew G. Knepley 
484b0a623aaSMatthew G. Knepley   Level: developer
485b0a623aaSMatthew G. Knepley 
486c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
487b0a623aaSMatthew G. Knepley @*/
488d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
489d71ae5a4SJacob Faibussowitsch {
490e540f424SMichael Lange   MPI_Comm           comm;
491b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
492874ddda9SLisandro Dalcin   PetscSF            sfPoint;
493b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
494b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4951fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
496b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4971fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4989852e123SBarry Smith   PetscMPIInt        rank, size;
49931bc6364SLisandro Dalcin   PetscBool          flg;
500b0a623aaSMatthew G. Knepley 
501b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
5026ba1a4c7SVaclav Hapla   *ovLabel = NULL;
5039566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5049566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5063ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
5079566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
5089566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
509d1674c6dSMatthew Knepley   if (!levels) {
510d1674c6dSMatthew Knepley     /* Add owned points */
5119566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
5129566063dSJacob Faibussowitsch     for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
5133ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
514d1674c6dSMatthew Knepley   }
5159566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
5169566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
5179566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
518b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
519b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
520b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
521b0a623aaSMatthew G. Knepley 
5229566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj));
5239566063dSJacob Faibussowitsch     for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank));
524b0a623aaSMatthew G. Knepley   }
5259566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootrank, &rrank));
5269566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafrank, &nrank));
527b0a623aaSMatthew G. Knepley   /* Handle roots */
528b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
529b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
530b0a623aaSMatthew G. Knepley 
531b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
532b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
5339566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(leafSection, p, &neighbors));
534b0a623aaSMatthew G. Knepley       if (neighbors) {
5359566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(leafSection, p, &noff));
5369566063dSJacob Faibussowitsch         PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
537b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
538b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff + n];
539b0a623aaSMatthew G. Knepley 
540b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
5419566063dSJacob Faibussowitsch           for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
542b0a623aaSMatthew G. Knepley         }
543b0a623aaSMatthew G. Knepley       }
544b0a623aaSMatthew G. Knepley     }
545b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
5469566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootSection, p, &neighbors));
547b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
5489566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootSection, p, &noff));
5499566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
550b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
551b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff + n];
552b0a623aaSMatthew G. Knepley 
553b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
5549566063dSJacob Faibussowitsch       for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
555b0a623aaSMatthew G. Knepley     }
556b0a623aaSMatthew G. Knepley   }
5579566063dSJacob Faibussowitsch   PetscCall(PetscFree(adj));
5589566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootrank, &rrank));
5599566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafrank, &nrank));
56024d039d7SMichael Lange   /* Add additional overlap levels */
561be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
562be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
5639566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank));
564be200f8dSMichael Lange     /* Add next level of point donations to the label */
5659566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank));
566be200f8dSMichael Lange   }
56726a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5689566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
5699566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg));
570e540f424SMichael Lange   if (flg) {
571825f8a23SLisandro Dalcin     PetscViewer viewer;
5729566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
5739566063dSJacob Faibussowitsch     PetscCall(DMLabelView(ovAdjByRank, viewer));
574b0a623aaSMatthew G. Knepley   }
575874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
5769566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
5779566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
578a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
5799566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
580e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
5819566063dSJacob Faibussowitsch     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
5829566063dSJacob Faibussowitsch     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
583e540f424SMichael Lange   }
584e540f424SMichael Lange   /* Clean up */
5859566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&ovAdjByRank));
5863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
587b0a623aaSMatthew G. Knepley }
58870034214SMatthew G. Knepley 
589d71ae5a4SJacob Faibussowitsch static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank)
590d71ae5a4SJacob Faibussowitsch {
591c506a872SMatthew G. Knepley   PetscInt neighbors, el;
592c506a872SMatthew G. Knepley 
593c506a872SMatthew G. Knepley   PetscFunctionBegin;
594c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetDof(section, p, &neighbors));
595c506a872SMatthew G. Knepley   if (neighbors) {
596c506a872SMatthew G. Knepley     PetscInt   *adj     = NULL;
597c506a872SMatthew G. Knepley     PetscInt    adjSize = PETSC_DETERMINE, noff, n, a;
598c506a872SMatthew G. Knepley     PetscMPIInt rank;
599c506a872SMatthew G. Knepley 
600c506a872SMatthew G. Knepley     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
601c506a872SMatthew G. Knepley     PetscCall(PetscSectionGetOffset(section, p, &noff));
602c506a872SMatthew G. Knepley     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
603c506a872SMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
604c506a872SMatthew G. Knepley       const PetscInt remoteRank = ranks[noff + n];
605c506a872SMatthew G. Knepley 
606c506a872SMatthew G. Knepley       if (remoteRank == rank) continue;
607c506a872SMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {
608c506a872SMatthew G. Knepley         PetscBool insert = PETSC_TRUE;
609c506a872SMatthew G. Knepley 
610c506a872SMatthew G. Knepley         for (el = 0; el < numExLabels; ++el) {
611c506a872SMatthew G. Knepley           PetscInt exVal;
612c506a872SMatthew G. Knepley           PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
6139371c9d4SSatish Balay           if (exVal == exValue[el]) {
6149371c9d4SSatish Balay             insert = PETSC_FALSE;
6159371c9d4SSatish Balay             break;
6169371c9d4SSatish Balay           }
617c506a872SMatthew G. Knepley         }
618c506a872SMatthew G. Knepley         if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
619c506a872SMatthew G. Knepley       }
620c506a872SMatthew G. Knepley     }
621f88a03deSMatthew G. Knepley     PetscCall(PetscFree(adj));
622c506a872SMatthew G. Knepley   }
6233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
624c506a872SMatthew G. Knepley }
625c506a872SMatthew G. Knepley 
626c506a872SMatthew G. Knepley /*@C
627c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes
628c506a872SMatthew G. Knepley 
629c506a872SMatthew G. Knepley   Collective on dm
630c506a872SMatthew G. Knepley 
631c506a872SMatthew G. Knepley   Input Parameters:
632c506a872SMatthew G. Knepley + dm          - The DM
633c506a872SMatthew G. Knepley . numLabels   - The number of labels to draw candidate points from
634c506a872SMatthew G. Knepley . label       - An array of labels containing candidate points
635c506a872SMatthew G. Knepley . value       - An array of label values marking the candidate points
636c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion
637c506a872SMatthew G. Knepley . exLabel     - An array of labels indicating points to be excluded, or NULL
638c506a872SMatthew G. Knepley . exValue     - An array of label values to be excluded, or NULL
639c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point
640c506a872SMatthew G. Knepley . rootrank    - The rank of each edge into the root point
641c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
642c506a872SMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
643c506a872SMatthew G. Knepley 
644c506a872SMatthew G. Knepley   Output Parameter:
645c506a872SMatthew G. Knepley . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
646c506a872SMatthew G. Knepley 
647c506a872SMatthew G. Knepley   Note:
648c506a872SMatthew G. Knepley   The candidate points are only added to the overlap if they are adjacent to a shared point
649c506a872SMatthew G. Knepley 
650c506a872SMatthew G. Knepley   Level: developer
651c506a872SMatthew G. Knepley 
652c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
653c506a872SMatthew G. Knepley @*/
654d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
655d71ae5a4SJacob Faibussowitsch {
656c506a872SMatthew G. Knepley   MPI_Comm           comm;
657c506a872SMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
658c506a872SMatthew G. Knepley   PetscSF            sfPoint;
659c506a872SMatthew G. Knepley   const PetscSFNode *remote;
660c506a872SMatthew G. Knepley   const PetscInt    *local;
661c506a872SMatthew G. Knepley   const PetscInt    *nrank, *rrank;
662c506a872SMatthew G. Knepley   PetscInt          *adj = NULL;
663c506a872SMatthew G. Knepley   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l, el;
664c506a872SMatthew G. Knepley   PetscMPIInt        rank, size;
665c506a872SMatthew G. Knepley   PetscBool          flg;
666c506a872SMatthew G. Knepley 
667c506a872SMatthew G. Knepley   PetscFunctionBegin;
668c506a872SMatthew G. Knepley   *ovLabel = NULL;
669c506a872SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
670c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
671c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
6723ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
673c506a872SMatthew G. Knepley   PetscCall(DMGetPointSF(dm, &sfPoint));
674c506a872SMatthew G. Knepley   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
675c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
676c506a872SMatthew G. Knepley   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
677c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
678c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(rootrank, &rrank));
679c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(leafrank, &nrank));
680c506a872SMatthew G. Knepley   for (l = 0; l < numLabels; ++l) {
681c506a872SMatthew G. Knepley     IS              valIS;
682c506a872SMatthew G. Knepley     const PetscInt *points;
683c506a872SMatthew G. Knepley     PetscInt        n;
684c506a872SMatthew G. Knepley 
685c506a872SMatthew G. Knepley     PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS));
686c506a872SMatthew G. Knepley     if (!valIS) continue;
687c506a872SMatthew G. Knepley     PetscCall(ISGetIndices(valIS, &points));
688c506a872SMatthew G. Knepley     PetscCall(ISGetLocalSize(valIS, &n));
689c506a872SMatthew G. Knepley     for (PetscInt i = 0; i < n; ++i) {
690c506a872SMatthew G. Knepley       const PetscInt p = points[i];
691c506a872SMatthew G. Knepley 
692c506a872SMatthew G. Knepley       if ((p >= sStart) && (p < sEnd)) {
693c506a872SMatthew G. Knepley         PetscInt loc, adjSize = PETSC_DETERMINE;
694c506a872SMatthew G. Knepley 
695c506a872SMatthew G. Knepley         /* Handle leaves: shared with the root point */
696c506a872SMatthew G. Knepley         if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc));
697c506a872SMatthew G. Knepley         else loc = (p >= 0 && p < nleaves) ? p : -1;
698c506a872SMatthew G. Knepley         if (loc >= 0) {
699c506a872SMatthew G. Knepley           const PetscInt remoteRank = remote[loc].rank;
700c506a872SMatthew G. Knepley 
701c506a872SMatthew G. Knepley           PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
702c506a872SMatthew G. Knepley           for (PetscInt a = 0; a < adjSize; ++a) {
703c506a872SMatthew G. Knepley             PetscBool insert = PETSC_TRUE;
704c506a872SMatthew G. Knepley 
705c506a872SMatthew G. Knepley             for (el = 0; el < numExLabels; ++el) {
706c506a872SMatthew G. Knepley               PetscInt exVal;
707c506a872SMatthew G. Knepley               PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
7089371c9d4SSatish Balay               if (exVal == exValue[el]) {
7099371c9d4SSatish Balay                 insert = PETSC_FALSE;
7109371c9d4SSatish Balay                 break;
7119371c9d4SSatish Balay               }
712c506a872SMatthew G. Knepley             }
713c506a872SMatthew G. Knepley             if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
714c506a872SMatthew G. Knepley           }
715c506a872SMatthew G. Knepley         }
716c506a872SMatthew G. Knepley         /* Some leaves share a root with other leaves on different processes */
7173ba16761SJacob Faibussowitsch         PetscCall(HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank));
718c506a872SMatthew G. Knepley       }
719c506a872SMatthew G. Knepley       /* Roots are shared with leaves */
7203ba16761SJacob Faibussowitsch       PetscCall(HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank));
721c506a872SMatthew G. Knepley     }
722c506a872SMatthew G. Knepley     PetscCall(ISRestoreIndices(valIS, &points));
723c506a872SMatthew G. Knepley     PetscCall(ISDestroy(&valIS));
724c506a872SMatthew G. Knepley   }
725c506a872SMatthew G. Knepley   PetscCall(PetscFree(adj));
726c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(rootrank, &rrank));
727c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(leafrank, &nrank));
728c506a872SMatthew G. Knepley   /* We require the closure in the overlap */
729c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
730c506a872SMatthew G. Knepley   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg));
731c506a872SMatthew G. Knepley   if (flg) {
732c506a872SMatthew G. Knepley     PetscViewer viewer;
733c506a872SMatthew G. Knepley     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
734c506a872SMatthew G. Knepley     PetscCall(DMLabelView(ovAdjByRank, viewer));
735c506a872SMatthew G. Knepley   }
736c506a872SMatthew G. Knepley   /* Invert sender to receiver label */
737c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
738c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
739c506a872SMatthew G. Knepley   /* Add owned points, except for shared local points */
740c506a872SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
741c506a872SMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
742c506a872SMatthew G. Knepley     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
743c506a872SMatthew G. Knepley     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
744c506a872SMatthew G. Knepley   }
745c506a872SMatthew G. Knepley   /* Clean up */
746c506a872SMatthew G. Knepley   PetscCall(DMLabelDestroy(&ovAdjByRank));
7473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
748c506a872SMatthew G. Knepley }
749c506a872SMatthew G. Knepley 
75024cc2ca5SMatthew G. Knepley /*@C
75124cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
75224cc2ca5SMatthew G. Knepley 
753d083f849SBarry Smith   Collective on dm
75424cc2ca5SMatthew G. Knepley 
75524cc2ca5SMatthew G. Knepley   Input Parameters:
75624cc2ca5SMatthew G. Knepley + dm          - The DM
75724cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
75824cc2ca5SMatthew G. Knepley 
759064ec1f3Sprj-   Output Parameter:
760a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
76124cc2ca5SMatthew G. Knepley 
76224cc2ca5SMatthew G. Knepley   Level: developer
76324cc2ca5SMatthew G. Knepley 
764db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()`
76524cc2ca5SMatthew G. Knepley @*/
766d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
767d71ae5a4SJacob Faibussowitsch {
76846f9b1c3SMichael Lange   MPI_Comm           comm;
7699852e123SBarry Smith   PetscMPIInt        rank, size;
77046f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
77146f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
77246f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
77346f9b1c3SMichael Lange   PetscSFNode       *iremote;
77446f9b1c3SMichael Lange   PetscSF            pointSF;
77546f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
77646f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
77746f9b1c3SMichael Lange 
77846f9b1c3SMichael Lange   PetscFunctionBegin;
77946f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7809566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
7819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
7829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
7839566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
78446f9b1c3SMichael Lange 
78546f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
7869566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote));
7879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
78846f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
7899566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
79046f9b1c3SMichael Lange     for (p = pStart; p < pEnd; p++) pointDepths[p] = d;
79146f9b1c3SMichael Lange   }
79246f9b1c3SMichael Lange   for (p = 0; p < nleaves; p++) remoteDepths[p] = -1;
7939566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE));
7949566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE));
79546f9b1c3SMichael Lange 
7962d4ee042Sprj-   /* Count received points in each stratum and compute the internal strata shift */
7979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim + 1, &depthRecv, dim + 1, &depthShift, dim + 1, &depthIdx));
79846f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) depthRecv[d] = 0;
79946f9b1c3SMichael Lange   for (p = 0; p < nleaves; p++) depthRecv[remoteDepths[p]]++;
80046f9b1c3SMichael Lange   depthShift[dim] = 0;
80146f9b1c3SMichael Lange   for (d = 0; d < dim; d++) depthShift[d] = depthRecv[dim];
80246f9b1c3SMichael Lange   for (d = 1; d < dim; d++) depthShift[d] += depthRecv[0];
80346f9b1c3SMichael Lange   for (d = dim - 2; d > 0; d--) depthShift[d] += depthRecv[d + 1];
80446f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
8059566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
80646f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
80746f9b1c3SMichael Lange   }
80846f9b1c3SMichael Lange 
80946f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
8109566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
81146f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
8129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &ilocal));
8139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &iremote));
81446f9b1c3SMichael Lange   /* First map local points to themselves */
81546f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
8169566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
81746f9b1c3SMichael Lange     for (p = pStart; p < pEnd; p++) {
81846f9b1c3SMichael Lange       point                = p + depthShift[d];
81946f9b1c3SMichael Lange       ilocal[point]        = point;
82046f9b1c3SMichael Lange       iremote[point].index = p;
82146f9b1c3SMichael Lange       iremote[point].rank  = rank;
82246f9b1c3SMichael Lange       depthIdx[d]++;
82346f9b1c3SMichael Lange     }
82446f9b1c3SMichael Lange   }
82546f9b1c3SMichael Lange 
82646f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
8279566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &pointSF));
8289566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote));
82946f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
8309566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
83146f9b1c3SMichael Lange     for (p = 0; p < numSharedPoints; p++) {
83246f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
83346f9b1c3SMichael Lange         point                = sharedLocal[p] + depthShift[d];
83446f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
83546f9b1c3SMichael Lange         iremote[point].rank  = sharedRemote[p].rank;
83646f9b1c3SMichael Lange       }
83746f9b1c3SMichael Lange     }
83846f9b1c3SMichael Lange   }
83946f9b1c3SMichael Lange 
84046f9b1c3SMichael Lange   /* Now add the incoming overlap points */
84146f9b1c3SMichael Lange   for (p = 0; p < nleaves; p++) {
84246f9b1c3SMichael Lange     point                = depthIdx[remoteDepths[p]];
84346f9b1c3SMichael Lange     ilocal[point]        = point;
84446f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
84546f9b1c3SMichael Lange     iremote[point].rank  = overlapRemote[p].rank;
84646f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
84746f9b1c3SMichael Lange   }
8489566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths, remoteDepths));
84946f9b1c3SMichael Lange 
8509566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
8519566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Overlap Migration SF"));
8529566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*migrationSF));
8539566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
8549566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, pEnd - pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
85546f9b1c3SMichael Lange 
8569566063dSJacob Faibussowitsch   PetscCall(PetscFree3(depthRecv, depthShift, depthIdx));
8573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
85870034214SMatthew G. Knepley }
85970034214SMatthew G. Knepley 
860a9f1d5b2SMichael Lange /*@
861f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
862a9f1d5b2SMichael Lange 
863064ec1f3Sprj-   Input Parameters:
864a9f1d5b2SMichael Lange + dm          - The DM
865a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
866a9f1d5b2SMichael Lange 
867a9f1d5b2SMichael Lange   Output Parameter:
868a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
869a9f1d5b2SMichael Lange 
870412e9a14SMatthew G. Knepley   Note:
871412e9a14SMatthew G. Knepley   This lexicographically sorts by (depth, cellType)
872412e9a14SMatthew G. Knepley 
873a9f1d5b2SMichael Lange   Level: developer
874a9f1d5b2SMichael Lange 
875db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
876a9f1d5b2SMichael Lange @*/
877d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
878d71ae5a4SJacob Faibussowitsch {
879a9f1d5b2SMichael Lange   MPI_Comm           comm;
8809852e123SBarry Smith   PetscMPIInt        rank, size;
881412e9a14SMatthew G. Knepley   PetscInt           d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves;
882412e9a14SMatthew G. Knepley   PetscSFNode       *pointDepths, *remoteDepths;
883412e9a14SMatthew G. Knepley   PetscInt          *ilocal;
884a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
885412e9a14SMatthew G. Knepley   PetscInt          *ctRecv, *ctShift, *ctIdx;
886a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
887a9f1d5b2SMichael Lange 
888a9f1d5b2SMichael Lange   PetscFunctionBegin;
889a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8909566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
8919566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
8929566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
8939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &ldepth));
8949566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
8951c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm));
89663a3b9bcSJacob Faibussowitsch   PetscCheck(!(ldepth >= 0) || !(depth != ldepth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth);
8979566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF, dm, 0, 0, 0));
898a9f1d5b2SMichael Lange 
899a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
9009566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote));
9019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
9027fab53ddSMatthew G. Knepley   for (d = 0; d < depth + 1; ++d) {
9039566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
904f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
905412e9a14SMatthew G. Knepley       DMPolytopeType ct;
906f0e73a3dSToby Isaac 
9079566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, p, &ct));
908412e9a14SMatthew G. Knepley       pointDepths[p].index = d;
909412e9a14SMatthew G. Knepley       pointDepths[p].rank  = ct;
910f0e73a3dSToby Isaac     }
911412e9a14SMatthew G. Knepley   }
9129371c9d4SSatish Balay   for (p = 0; p < nleaves; ++p) {
9139371c9d4SSatish Balay     remoteDepths[p].index = -1;
9149371c9d4SSatish Balay     remoteDepths[p].rank  = -1;
9159371c9d4SSatish Balay   }
9169566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE));
9179566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE));
918412e9a14SMatthew G. Knepley   /* Count received points in each stratum and compute the internal strata shift */
9199566063dSJacob Faibussowitsch   PetscCall(PetscCalloc6(depth + 1, &depthRecv, depth + 1, &depthShift, depth + 1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx));
920412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
921412e9a14SMatthew G. Knepley     if (remoteDepths[p].rank < 0) {
922412e9a14SMatthew G. Knepley       ++depthRecv[remoteDepths[p].index];
923412e9a14SMatthew G. Knepley     } else {
924412e9a14SMatthew G. Knepley       ++ctRecv[remoteDepths[p].rank];
925412e9a14SMatthew G. Knepley     }
926412e9a14SMatthew G. Knepley   }
927412e9a14SMatthew G. Knepley   {
928412e9a14SMatthew G. Knepley     PetscInt depths[4], dims[4], shift = 0, i, c;
929412e9a14SMatthew G. Knepley 
9308238f61eSMatthew G. Knepley     /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1)
9318238f61eSMatthew G. Knepley          Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells
9328238f61eSMatthew G. Knepley      */
9339371c9d4SSatish Balay     depths[0] = depth;
9349371c9d4SSatish Balay     depths[1] = 0;
9359371c9d4SSatish Balay     depths[2] = depth - 1;
9369371c9d4SSatish Balay     depths[3] = 1;
9379371c9d4SSatish Balay     dims[0]   = dim;
9389371c9d4SSatish Balay     dims[1]   = 0;
9399371c9d4SSatish Balay     dims[2]   = dim - 1;
9409371c9d4SSatish Balay     dims[3]   = 1;
941412e9a14SMatthew G. Knepley     for (i = 0; i <= depth; ++i) {
942412e9a14SMatthew G. Knepley       const PetscInt dep = depths[i];
943412e9a14SMatthew G. Knepley       const PetscInt dim = dims[i];
944412e9a14SMatthew G. Knepley 
945412e9a14SMatthew G. Knepley       for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
9468238f61eSMatthew G. Knepley         if (DMPolytopeTypeGetDim((DMPolytopeType)c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue;
947412e9a14SMatthew G. Knepley         ctShift[c] = shift;
948412e9a14SMatthew G. Knepley         shift += ctRecv[c];
949412e9a14SMatthew G. Knepley       }
950412e9a14SMatthew G. Knepley       depthShift[dep] = shift;
951412e9a14SMatthew G. Knepley       shift += depthRecv[dep];
952412e9a14SMatthew G. Knepley     }
953412e9a14SMatthew G. Knepley     for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
954412e9a14SMatthew G. Knepley       const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType)c);
955412e9a14SMatthew G. Knepley 
9568238f61eSMatthew G. Knepley       if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) {
957412e9a14SMatthew G. Knepley         ctShift[c] = shift;
958412e9a14SMatthew G. Knepley         shift += ctRecv[c];
959412e9a14SMatthew G. Knepley       }
960412e9a14SMatthew G. Knepley     }
961412e9a14SMatthew G. Knepley   }
962a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
9639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &ilocal));
9647fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
965412e9a14SMatthew G. Knepley     const PetscInt       dep = remoteDepths[p].index;
966412e9a14SMatthew G. Knepley     const DMPolytopeType ct  = (DMPolytopeType)remoteDepths[p].rank;
9677fab53ddSMatthew G. Knepley 
968412e9a14SMatthew G. Knepley     if ((PetscInt)ct < 0) {
9697fab53ddSMatthew G. Knepley       ilocal[p] = depthShift[dep] + depthIdx[dep];
970412e9a14SMatthew G. Knepley       ++depthIdx[dep];
971412e9a14SMatthew G. Knepley     } else {
972412e9a14SMatthew G. Knepley       ilocal[p] = ctShift[ct] + ctIdx[ct];
973412e9a14SMatthew G. Knepley       ++ctIdx[ct];
974412e9a14SMatthew G. Knepley     }
975a9f1d5b2SMichael Lange   }
9769566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
9779566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Migration SF"));
9789566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES));
9799566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths, remoteDepths));
9809566063dSJacob Faibussowitsch   PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx));
9819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF, dm, 0, 0, 0));
9823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
983a9f1d5b2SMichael Lange }
984a9f1d5b2SMichael Lange 
98570034214SMatthew G. Knepley /*@
98670034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
98770034214SMatthew G. Knepley 
988d083f849SBarry Smith   Collective on dm
98970034214SMatthew G. Knepley 
99070034214SMatthew G. Knepley   Input Parameters:
99170034214SMatthew G. Knepley + dm - The DMPlex object
99270034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
99370034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
994cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
99570034214SMatthew G. Knepley 
99670034214SMatthew G. Knepley   Output Parameters:
99770034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
998cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
99970034214SMatthew G. Knepley 
100070034214SMatthew G. Knepley   Level: developer
100170034214SMatthew G. Knepley 
1002db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()`
100370034214SMatthew G. Knepley @*/
1004d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
1005d71ae5a4SJacob Faibussowitsch {
100670034214SMatthew G. Knepley   PetscSF      fieldSF;
100770034214SMatthew G. Knepley   PetscInt    *remoteOffsets, fieldSize;
100870034214SMatthew G. Knepley   PetscScalar *originalValues, *newValues;
100970034214SMatthew G. Knepley 
101070034214SMatthew G. Knepley   PetscFunctionBegin;
10119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0));
10129566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
101370034214SMatthew G. Knepley 
10149566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10159566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE));
10169566063dSJacob Faibussowitsch   PetscCall(VecSetType(newVec, dm->vectype));
101770034214SMatthew G. Knepley 
10189566063dSJacob Faibussowitsch   PetscCall(VecGetArray(originalVec, &originalValues));
10199566063dSJacob Faibussowitsch   PetscCall(VecGetArray(newVec, &newValues));
10209566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10219566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10229566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE));
10239566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE));
10249566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(newVec, &newValues));
10269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(originalVec, &originalValues));
10279566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0));
10283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
102970034214SMatthew G. Knepley }
103070034214SMatthew G. Knepley 
103170034214SMatthew G. Knepley /*@
103270034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
103370034214SMatthew G. Knepley 
1034d083f849SBarry Smith   Collective on dm
103570034214SMatthew G. Knepley 
103670034214SMatthew G. Knepley   Input Parameters:
103770034214SMatthew G. Knepley + dm - The DMPlex object
103870034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
103970034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
104070034214SMatthew G. Knepley - originalIS - The existing data
104170034214SMatthew G. Knepley 
104270034214SMatthew G. Knepley   Output Parameters:
104370034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
104470034214SMatthew G. Knepley - newIS - The new data
104570034214SMatthew G. Knepley 
104670034214SMatthew G. Knepley   Level: developer
104770034214SMatthew G. Knepley 
1048db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()`
104970034214SMatthew G. Knepley @*/
1050d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
1051d71ae5a4SJacob Faibussowitsch {
105270034214SMatthew G. Knepley   PetscSF         fieldSF;
105370034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
105470034214SMatthew G. Knepley   const PetscInt *originalValues;
105570034214SMatthew G. Knepley 
105670034214SMatthew G. Knepley   PetscFunctionBegin;
10579566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0));
10589566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
105970034214SMatthew G. Knepley 
10609566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(fieldSize, &newValues));
106270034214SMatthew G. Knepley 
10639566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(originalIS, &originalValues));
10649566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10659566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE));
10679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE));
10689566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10699566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(originalIS, &originalValues));
10709566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS));
10719566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0));
10723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
107370034214SMatthew G. Knepley }
107470034214SMatthew G. Knepley 
107570034214SMatthew G. Knepley /*@
107670034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
107770034214SMatthew G. Knepley 
1078d083f849SBarry Smith   Collective on dm
107970034214SMatthew G. Knepley 
108070034214SMatthew G. Knepley   Input Parameters:
108170034214SMatthew G. Knepley + dm - The DMPlex object
108270034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
108370034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
108470034214SMatthew G. Knepley . datatype - The type of data
108570034214SMatthew G. Knepley - originalData - The existing data
108670034214SMatthew G. Knepley 
108770034214SMatthew G. Knepley   Output Parameters:
108870034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
108970034214SMatthew G. Knepley - newData - The new data
109070034214SMatthew G. Knepley 
109170034214SMatthew G. Knepley   Level: developer
109270034214SMatthew G. Knepley 
1093db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`
109470034214SMatthew G. Knepley @*/
1095d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
1096d71ae5a4SJacob Faibussowitsch {
109770034214SMatthew G. Knepley   PetscSF     fieldSF;
109870034214SMatthew G. Knepley   PetscInt   *remoteOffsets, fieldSize;
109970034214SMatthew G. Knepley   PetscMPIInt dataSize;
110070034214SMatthew G. Knepley 
110170034214SMatthew G. Knepley   PetscFunctionBegin;
11029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeData, dm, 0, 0, 0));
11039566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
110470034214SMatthew G. Knepley 
11059566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
11069566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_size(datatype, &dataSize));
11079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc(fieldSize * dataSize, newData));
110870034214SMatthew G. Knepley 
11099566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
11109566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
11119566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData, MPI_REPLACE));
11129566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData, MPI_REPLACE));
11139566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
11149566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeData, dm, 0, 0, 0));
11153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
111670034214SMatthew G. Knepley }
111770034214SMatthew G. Knepley 
1118d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1119d71ae5a4SJacob Faibussowitsch {
1120cc71bff1SMichael Lange   DM_Plex     *pmesh = (DM_Plex *)(dmParallel)->data;
1121cc71bff1SMichael Lange   MPI_Comm     comm;
1122cc71bff1SMichael Lange   PetscSF      coneSF;
1123cc71bff1SMichael Lange   PetscSection originalConeSection, newConeSection;
1124ac04eaf7SToby Isaac   PetscInt    *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
1125cc71bff1SMichael Lange   PetscBool    flg;
1126cc71bff1SMichael Lange 
1127cc71bff1SMichael Lange   PetscFunctionBegin;
1128cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11290c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
11309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones, dm, 0, 0, 0));
1131cc71bff1SMichael Lange   /* Distribute cone section */
11329566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
11339566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dm, &originalConeSection));
11349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection));
11359566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection));
11369566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dmParallel));
1137cc71bff1SMichael Lange   /* Communicate and renumber cones */
11389566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF));
11399566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
11409566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dm, &cones));
1141ac04eaf7SToby Isaac   if (original) {
1142ac04eaf7SToby Isaac     PetscInt numCones;
1143ac04eaf7SToby Isaac 
11449566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(originalConeSection, &numCones));
11459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numCones, &globCones));
11469566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones));
1147367003a6SStefano Zampini   } else {
1148ac04eaf7SToby Isaac     globCones = cones;
1149ac04eaf7SToby Isaac   }
11509566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dmParallel, &newCones));
11519566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE));
11529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE));
11531baa6e33SBarry Smith   if (original) PetscCall(PetscFree(globCones));
11549566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize));
11559566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones));
115676bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
11573533c52bSMatthew G. Knepley     PetscInt  p;
11583533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
11593533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
11609371c9d4SSatish Balay       if (newCones[p] < 0) {
11619371c9d4SSatish Balay         valid = PETSC_FALSE;
11629371c9d4SSatish Balay         PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank, p));
11639371c9d4SSatish Balay       }
11643533c52bSMatthew G. Knepley     }
116528b400f6SJacob Faibussowitsch     PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
11663533c52bSMatthew G. Knepley   }
11679566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-cones_view", &flg));
1168cc71bff1SMichael Lange   if (flg) {
11699566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Serial Cone Section:\n"));
11709566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm)));
11719566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n"));
11729566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm)));
11739566063dSJacob Faibussowitsch     PetscCall(PetscSFView(coneSF, NULL));
1174cc71bff1SMichael Lange   }
11759566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dm, &cones));
11769566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones));
11779566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE));
11789566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE));
11799566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&coneSF));
11809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones, dm, 0, 0, 0));
1181eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
1182cc71bff1SMichael Lange   {
1183cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1184cc71bff1SMichael Lange 
11859566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd));
11869566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd));
1187cc71bff1SMichael Lange   }
11889566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(dmParallel));
11899566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(dmParallel));
11901cf84007SMatthew G. Knepley   {
11911cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
11921cf84007SMatthew G. Knepley 
11939566063dSJacob Faibussowitsch     PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
11949566063dSJacob Faibussowitsch     PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure));
11959566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
11969566063dSJacob Faibussowitsch     PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors));
11971cf84007SMatthew G. Knepley   }
11983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1199cc71bff1SMichael Lange }
1200cc71bff1SMichael Lange 
1201d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
1202d71ae5a4SJacob Faibussowitsch {
12030df0e737SMichael Lange   MPI_Comm         comm;
12049318fe57SMatthew G. Knepley   DM               cdm, cdmParallel;
12050df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
12060df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
12070df0e737SMichael Lange   PetscInt         bs;
12080df0e737SMichael Lange   const char      *name;
12094fb89dddSMatthew G. Knepley   const PetscReal *maxCell, *Lstart, *L;
12100df0e737SMichael Lange 
12110df0e737SMichael Lange   PetscFunctionBegin;
12120df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12130c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12140df0e737SMichael Lange 
12159566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12166858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(dm, &cdm));
12176858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel));
12186858538eSMatthew G. Knepley   PetscCall(DMCopyDisc(cdm, cdmParallel));
12199566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dm, &originalCoordSection));
12209566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection));
12219566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates));
12220df0e737SMichael Lange   if (originalCoordinates) {
12239566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
12249566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name));
12259566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name));
12260df0e737SMichael Lange 
12279566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates));
12289566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates));
12299566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(originalCoordinates, &bs));
12309566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(newCoordinates, bs));
12319566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&newCoordinates));
12320df0e737SMichael Lange   }
12336858538eSMatthew G. Knepley 
12346858538eSMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12354fb89dddSMatthew G. Knepley   PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
12364fb89dddSMatthew G. Knepley   PetscCall(DMSetPeriodicity(dmParallel, maxCell, Lstart, L));
12376858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinateDM(dm, &cdm));
12386858538eSMatthew G. Knepley   if (cdm) {
12396858538eSMatthew G. Knepley     PetscCall(DMClone(dmParallel, &cdmParallel));
12406858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinateDM(dmParallel, cdmParallel));
12419566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(cdm, cdmParallel));
12426858538eSMatthew G. Knepley     PetscCall(DMDestroy(&cdmParallel));
12436858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinateSection(dm, &originalCoordSection));
12446858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinatesLocal(dm, &originalCoordinates));
12456858538eSMatthew G. Knepley     PetscCall(PetscSectionCreate(comm, &newCoordSection));
12466858538eSMatthew G. Knepley     if (originalCoordinates) {
12476858538eSMatthew G. Knepley       PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
12486858538eSMatthew G. Knepley       PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name));
12496858538eSMatthew G. Knepley       PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name));
12506858538eSMatthew G. Knepley 
12516858538eSMatthew G. Knepley       PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates));
12526858538eSMatthew G. Knepley       PetscCall(VecGetBlockSize(originalCoordinates, &bs));
12536858538eSMatthew G. Knepley       PetscCall(VecSetBlockSize(newCoordinates, bs));
12546858538eSMatthew G. Knepley       PetscCall(DMSetCellCoordinateSection(dmParallel, bs, newCoordSection));
12556858538eSMatthew G. Knepley       PetscCall(DMSetCellCoordinatesLocal(dmParallel, newCoordinates));
12566858538eSMatthew G. Knepley       PetscCall(VecDestroy(&newCoordinates));
12576858538eSMatthew G. Knepley     }
12586858538eSMatthew G. Knepley     PetscCall(PetscSectionDestroy(&newCoordSection));
12596858538eSMatthew G. Knepley   }
12603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12610df0e737SMichael Lange }
12620df0e737SMichael Lange 
1263d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
1264d71ae5a4SJacob Faibussowitsch {
1265df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex *)dm->data;
12660df0e737SMichael Lange   MPI_Comm         comm;
12677980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
12680df0e737SMichael Lange   PetscMPIInt      rank;
12697980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1270df0420ecSMatthew G. Knepley   PetscBool        hasLabels  = PETSC_FALSE, lsendDepth, sendDepth;
1271df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
12720df0e737SMichael Lange 
12730df0e737SMichael Lange   PetscFunctionBegin;
12740df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12750c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12760c86c063SLisandro Dalcin 
12779566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels, dm, 0, 0, 0));
12789566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
12800df0e737SMichael Lange 
1281df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
12829566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
12839566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
12849566063dSJacob Faibussowitsch   if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject)depthLabel, &depthState));
1285df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
12861c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm));
1287df0420ecSMatthew G. Knepley   if (sendDepth) {
12889566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel));
12899566063dSJacob Faibussowitsch     PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE));
1290df0420ecSMatthew G. Knepley   }
1291d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
12929566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &numLocalLabels));
1293d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
12949566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm));
1295627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
12965d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1297bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
129883e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput     = PETSC_TRUE, isOutput;
1299d67d17b1SMatthew G. Knepley     const char *name = NULL;
13000df0e737SMichael Lange 
1301d67d17b1SMatthew G. Knepley     if (hasLabels) {
13029566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
13030df0e737SMichael Lange       /* Skip "depth" because it is recreated */
13049566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)label, &name));
13059566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &isDepth));
1306*bbcf679cSJacob Faibussowitsch     } else {
1307*bbcf679cSJacob Faibussowitsch       isDepth = PETSC_FALSE;
1308d67d17b1SMatthew G. Knepley     }
13099566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm));
131083e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
13119566063dSJacob Faibussowitsch     PetscCall(DMLabelDistribute(label, migrationSF, &labelNew));
131283e10cb3SLisandro Dalcin     if (isDepth) {
13137980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
13147980c9d4SMatthew G. Knepley       PetscInt gdepth;
13157980c9d4SMatthew G. Knepley 
13161c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm));
131763a3b9bcSJacob Faibussowitsch       PetscCheck(!(depth >= 0) || !(gdepth != depth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth);
13187980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
13197980c9d4SMatthew G. Knepley         PetscBool has;
13207980c9d4SMatthew G. Knepley 
13219566063dSJacob Faibussowitsch         PetscCall(DMLabelHasStratum(labelNew, d, &has));
13229566063dSJacob Faibussowitsch         if (!has) PetscCall(DMLabelAddStratum(labelNew, d));
13237980c9d4SMatthew G. Knepley       }
13247980c9d4SMatthew G. Knepley     }
13259566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmParallel, labelNew));
132683e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
13279566063dSJacob Faibussowitsch     if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput));
13281c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm));
13299566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)labelNew, &name));
13309566063dSJacob Faibussowitsch     PetscCall(DMSetLabelOutput(dmParallel, name, isOutput));
13319566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&labelNew));
13320df0e737SMichael Lange   }
1333695799ffSMatthew G. Knepley   {
1334695799ffSMatthew G. Knepley     DMLabel ctLabel;
1335695799ffSMatthew G. Knepley 
1336695799ffSMatthew G. Knepley     // Reset label for fast lookup
1337695799ffSMatthew G. Knepley     PetscCall(DMPlexGetCellTypeLabel(dmParallel, &ctLabel));
1338695799ffSMatthew G. Knepley     PetscCall(DMLabelMakeAllInvalid_Internal(ctLabel));
1339695799ffSMatthew G. Knepley   }
13409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels, dm, 0, 0, 0));
13413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13420df0e737SMichael Lange }
13430df0e737SMichael Lange 
1344d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1345d71ae5a4SJacob Faibussowitsch {
134615078cd4SMichael Lange   DM_Plex     *mesh  = (DM_Plex *)dm->data;
134715078cd4SMichael Lange   DM_Plex     *pmesh = (DM_Plex *)(dmParallel)->data;
1348a6f36705SMichael Lange   MPI_Comm     comm;
1349a6f36705SMichael Lange   DM           refTree;
1350a6f36705SMichael Lange   PetscSection origParentSection, newParentSection;
1351a6f36705SMichael Lange   PetscInt    *origParents, *origChildIDs;
1352a6f36705SMichael Lange   PetscBool    flg;
1353a6f36705SMichael Lange 
1354a6f36705SMichael Lange   PetscFunctionBegin;
1355a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13560c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
13579566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1358a6f36705SMichael Lange 
1359a6f36705SMichael Lange   /* Set up tree */
13609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetReferenceTree(dm, &refTree));
13619566063dSJacob Faibussowitsch   PetscCall(DMPlexSetReferenceTree(dmParallel, refTree));
13629566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTree(dm, &origParentSection, &origParents, &origChildIDs, NULL, NULL));
1363a6f36705SMichael Lange   if (origParentSection) {
1364a6f36705SMichael Lange     PetscInt  pStart, pEnd;
136508633170SToby Isaac     PetscInt *newParents, *newChildIDs, *globParents;
1366a6f36705SMichael Lange     PetscInt *remoteOffsetsParents, newParentSize;
1367a6f36705SMichael Lange     PetscSF   parentSF;
1368a6f36705SMichael Lange 
13699566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd));
13709566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel), &newParentSection));
13719566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(newParentSection, pStart, pEnd));
13729566063dSJacob Faibussowitsch     PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection));
13739566063dSJacob Faibussowitsch     PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF));
13749566063dSJacob Faibussowitsch     PetscCall(PetscFree(remoteOffsetsParents));
13759566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(newParentSection, &newParentSize));
13769566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(newParentSize, &newParents, newParentSize, &newChildIDs));
137708633170SToby Isaac     if (original) {
137808633170SToby Isaac       PetscInt numParents;
137908633170SToby Isaac 
13809566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(origParentSection, &numParents));
13819566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numParents, &globParents));
13829566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents));
13839371c9d4SSatish Balay     } else {
138408633170SToby Isaac       globParents = origParents;
138508633170SToby Isaac     }
13869566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE));
13879566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE));
13881baa6e33SBarry Smith     if (original) PetscCall(PetscFree(globParents));
13899566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE));
13909566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE));
13919566063dSJacob Faibussowitsch     PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents));
139276bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
13934a54e071SToby Isaac       PetscInt  p;
13944a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
13954a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
13969371c9d4SSatish Balay         if (newParents[p] < 0) {
13979371c9d4SSatish Balay           valid = PETSC_FALSE;
13989371c9d4SSatish Balay           PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p));
13999371c9d4SSatish Balay         }
14004a54e071SToby Isaac       }
140128b400f6SJacob Faibussowitsch       PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
14024a54e071SToby Isaac     }
14039566063dSJacob Faibussowitsch     PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-parents_view", &flg));
1404a6f36705SMichael Lange     if (flg) {
14059566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Serial Parent Section: \n"));
14069566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm)));
14079566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n"));
14089566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm)));
14099566063dSJacob Faibussowitsch       PetscCall(PetscSFView(parentSF, NULL));
1410a6f36705SMichael Lange     }
14119566063dSJacob Faibussowitsch     PetscCall(DMPlexSetTree(dmParallel, newParentSection, newParents, newChildIDs));
14129566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newParentSection));
14139566063dSJacob Faibussowitsch     PetscCall(PetscFree2(newParents, newChildIDs));
14149566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&parentSF));
1415a6f36705SMichael Lange   }
141615078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
14173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1418a6f36705SMichael Lange }
14190df0e737SMichael Lange 
1420d71ae5a4SJacob Faibussowitsch PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
1421d71ae5a4SJacob Faibussowitsch {
14229852e123SBarry Smith   PetscMPIInt rank, size;
14234eca1733SMichael Lange   MPI_Comm    comm;
14244eca1733SMichael Lange 
14254eca1733SMichael Lange   PetscFunctionBegin;
14264eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14270c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
14284eca1733SMichael Lange 
14294eca1733SMichael Lange   /* Create point SF for parallel mesh */
14309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF, dm, 0, 0, 0));
14319566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
14329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
14339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
14344eca1733SMichael Lange   {
14354eca1733SMichael Lange     const PetscInt *leaves;
14364eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
14374eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
14384eca1733SMichael Lange     PetscInt        pStart, pEnd;
14394eca1733SMichael Lange 
14409566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd));
14419566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL));
14429566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(numRoots, &rowners, numLeaves, &lowners));
14434eca1733SMichael Lange     for (p = 0; p < numRoots; p++) {
14444eca1733SMichael Lange       rowners[p].rank  = -1;
14454eca1733SMichael Lange       rowners[p].index = -1;
14464eca1733SMichael Lange     }
14479566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE));
14489566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE));
14494eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
14504eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
14514eca1733SMichael Lange         lowners[p].rank  = rank;
14524eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
14534eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
14544eca1733SMichael Lange         lowners[p].rank  = -2;
14554eca1733SMichael Lange         lowners[p].index = -2;
14564eca1733SMichael Lange       }
14574eca1733SMichael Lange     }
14584eca1733SMichael Lange     for (p = 0; p < numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
14594eca1733SMichael Lange       rowners[p].rank  = -3;
14604eca1733SMichael Lange       rowners[p].index = -3;
14614eca1733SMichael Lange     }
14629566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC));
14639566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC));
14649566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE));
14659566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE));
14664eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
14671dca8a05SBarry Smith       PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell partition corrupt: point not claimed");
14684eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
14694eca1733SMichael Lange     }
14709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints));
14719566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGhostPoints, &remotePoints));
14724eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
14734eca1733SMichael Lange       if (lowners[p].rank != rank) {
14744eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
14754eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
14764eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
14774eca1733SMichael Lange         ++gp;
14784eca1733SMichael Lange       }
14794eca1733SMichael Lange     }
14809566063dSJacob Faibussowitsch     PetscCall(PetscFree2(rowners, lowners));
14819566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER));
14829566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions((dmParallel)->sf));
14834eca1733SMichael Lange   }
14841cf84007SMatthew G. Knepley   {
14851cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
14861cf84007SMatthew G. Knepley 
14879566063dSJacob Faibussowitsch     PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
14889566063dSJacob Faibussowitsch     PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure));
14899566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
14909566063dSJacob Faibussowitsch     PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors));
14911cf84007SMatthew G. Knepley   }
14929566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF, dm, 0, 0, 0));
14933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14944eca1733SMichael Lange }
14954eca1733SMichael Lange 
149698ba2d7fSLawrence Mitchell /*@
149798ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
149898ba2d7fSLawrence Mitchell 
149998ba2d7fSLawrence Mitchell   Input Parameters:
150098ba2d7fSLawrence Mitchell + dm - The DMPlex object
150198ba2d7fSLawrence Mitchell - flg - Balance the partition?
150298ba2d7fSLawrence Mitchell 
150398ba2d7fSLawrence Mitchell   Level: intermediate
150498ba2d7fSLawrence Mitchell 
1505db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()`
150698ba2d7fSLawrence Mitchell @*/
1507d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
1508d71ae5a4SJacob Faibussowitsch {
150998ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
151098ba2d7fSLawrence Mitchell 
151198ba2d7fSLawrence Mitchell   PetscFunctionBegin;
151298ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
15133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
151498ba2d7fSLawrence Mitchell }
151598ba2d7fSLawrence Mitchell 
151698ba2d7fSLawrence Mitchell /*@
151798ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
151898ba2d7fSLawrence Mitchell 
151998ba2d7fSLawrence Mitchell   Input Parameter:
1520a2b725a8SWilliam Gropp . dm - The DMPlex object
152198ba2d7fSLawrence Mitchell 
152298ba2d7fSLawrence Mitchell   Output Parameter:
1523a2b725a8SWilliam Gropp . flg - Balance the partition?
152498ba2d7fSLawrence Mitchell 
152598ba2d7fSLawrence Mitchell   Level: intermediate
152698ba2d7fSLawrence Mitchell 
1527db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()`
152898ba2d7fSLawrence Mitchell @*/
1529d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
1530d71ae5a4SJacob Faibussowitsch {
153198ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
153298ba2d7fSLawrence Mitchell 
153398ba2d7fSLawrence Mitchell   PetscFunctionBegin;
153498ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1535534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
153698ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
15373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
153898ba2d7fSLawrence Mitchell }
153998ba2d7fSLawrence Mitchell 
1540fc02256fSLawrence Mitchell typedef struct {
1541fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1542fc02256fSLawrence Mitchell } Petsc3Int;
1543fc02256fSLawrence Mitchell 
1544fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
1545d71ae5a4SJacob Faibussowitsch static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype)
1546d71ae5a4SJacob Faibussowitsch {
1547fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1548fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1549fc02256fSLawrence Mitchell   PetscInt   i, len = *len_;
1550fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1551fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1552fc02256fSLawrence Mitchell       a[i].vote  = b[i].vote;
1553fc02256fSLawrence Mitchell       a[i].rank  = b[i].rank;
1554fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1555fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1556fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1557fc02256fSLawrence Mitchell         a[i].rank  = b[i].rank;
1558fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1559fc02256fSLawrence Mitchell       }
1560fc02256fSLawrence Mitchell     }
1561fc02256fSLawrence Mitchell   }
1562fc02256fSLawrence Mitchell }
1563fc02256fSLawrence Mitchell 
1564f5bf2dbfSMichael Lange /*@C
1565a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1566f5bf2dbfSMichael Lange 
1567064ec1f3Sprj-   Input Parameters:
1568f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1569f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
1570d8d19677SJose E. Roman - ownership   - Flag causing a vote to determine point ownership
1571f5bf2dbfSMichael Lange 
1572f5bf2dbfSMichael Lange   Output Parameter:
1573d8d19677SJose E. Roman . pointSF     - The star forest describing the point overlap in the remapped DM
1574f5bf2dbfSMichael Lange 
15753618482eSVaclav Hapla   Notes:
15763618482eSVaclav Hapla   Output pointSF is guaranteed to have the array of local indices (leaves) sorted.
15773618482eSVaclav Hapla 
1578f5bf2dbfSMichael Lange   Level: developer
1579f5bf2dbfSMichael Lange 
1580db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
1581f5bf2dbfSMichael Lange @*/
1582d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1583d71ae5a4SJacob Faibussowitsch {
158423193802SMatthew G. Knepley   PetscMPIInt        rank, size;
15851627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1586f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1587f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1588f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1589f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
159023193802SMatthew G. Knepley   Vec                shifts;
1591cae3e4f3SLawrence Mitchell   const PetscInt     numShifts  = 13759;
159223193802SMatthew G. Knepley   const PetscScalar *shift      = NULL;
159323193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
159498ba2d7fSLawrence Mitchell   PetscBool          balance;
1595f5bf2dbfSMichael Lange 
1596f5bf2dbfSMichael Lange   PetscFunctionBegin;
1597f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
15999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
16009566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF, dm, 0, 0, 0));
1601f5bf2dbfSMichael Lange 
16029566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
16039566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots));
16049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes));
1605f5bf2dbfSMichael Lange   if (ownership) {
1606fc02256fSLawrence Mitchell     MPI_Op       op;
1607fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1608fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
160923193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
161098ba2d7fSLawrence Mitchell     if (balance) {
161123193802SMatthew G. Knepley       PetscRandom r;
161223193802SMatthew G. Knepley 
16139566063dSJacob Faibussowitsch       PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r));
16149566063dSJacob Faibussowitsch       PetscCall(PetscRandomSetInterval(r, 0, 2467 * size));
16159566063dSJacob Faibussowitsch       PetscCall(VecCreate(PETSC_COMM_SELF, &shifts));
16169566063dSJacob Faibussowitsch       PetscCall(VecSetSizes(shifts, numShifts, numShifts));
16179566063dSJacob Faibussowitsch       PetscCall(VecSetType(shifts, VECSTANDARD));
16189566063dSJacob Faibussowitsch       PetscCall(VecSetRandom(shifts, r));
16199566063dSJacob Faibussowitsch       PetscCall(PetscRandomDestroy(&r));
16209566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(shifts, &shift));
162123193802SMatthew G. Knepley     }
162223193802SMatthew G. Knepley 
16239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nroots, &rootVote));
16249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &leafVote));
162523193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1626f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
162723193802SMatthew G. Knepley       if (shiftDebug) {
16289371c9d4SSatish Balay         PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject)dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index,
16299371c9d4SSatish Balay                                           (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]), (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size));
163023193802SMatthew G. Knepley       }
1631f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1632fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size;
1633fc02256fSLawrence Mitchell       leafVote[p].rank  = rank;
1634fc02256fSLawrence Mitchell       leafVote[p].index = p;
1635f5bf2dbfSMichael Lange     }
1636f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
16371627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1638fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1639fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1640fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1641f5bf2dbfSMichael Lange     }
16429566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype));
16439566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&datatype));
16449566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op));
16459566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op));
16469566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op));
16479566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_free(&op));
16489566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&datatype));
1649c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1650fc02256fSLawrence Mitchell       rootNodes[p].rank  = rootVote[p].rank;
1651fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1652c091126eSLawrence Mitchell     }
16539566063dSJacob Faibussowitsch     PetscCall(PetscFree(leafVote));
16549566063dSJacob Faibussowitsch     PetscCall(PetscFree(rootVote));
1655f5bf2dbfSMichael Lange   } else {
1656f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1657f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1658f5bf2dbfSMichael Lange       rootNodes[p].rank  = rank;
1659fc02256fSLawrence Mitchell     }
1660f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1661f5bf2dbfSMichael Lange       /* Write new local id into old location */
1662ad540459SPierre Jolivet       if (roots[p].rank == rank) rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1663f5bf2dbfSMichael Lange     }
1664f5bf2dbfSMichael Lange   }
16659566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE));
16669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE));
1667f5bf2dbfSMichael Lange 
166823193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1669b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
167023193802SMatthew G. Knepley   }
16719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointLocal));
16729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointRemote));
1673f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1674b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
16753618482eSVaclav Hapla       /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */
1676f5bf2dbfSMichael Lange       pointLocal[idx]  = p;
1677f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1678f5bf2dbfSMichael Lange       idx++;
1679f5bf2dbfSMichael Lange     }
1680f5bf2dbfSMichael Lange   }
168123193802SMatthew G. Knepley   if (shift) {
16829566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(shifts, &shift));
16839566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&shifts));
168423193802SMatthew G. Knepley   }
16859566063dSJacob Faibussowitsch   if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject)dm), PETSC_STDOUT));
16869566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), pointSF));
16879566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*pointSF));
16889566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER));
16899566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rootNodes, leafNodes));
16909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF, dm, 0, 0, 0));
1691d7d32a9aSMatthew G. Knepley   if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF, PETSC_FALSE));
16923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1693f5bf2dbfSMichael Lange }
1694f5bf2dbfSMichael Lange 
169515078cd4SMichael Lange /*@C
169615078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
169715078cd4SMichael Lange 
1698d083f849SBarry Smith   Collective on dm
169983655b49SVáclav Hapla 
1700064ec1f3Sprj-   Input Parameters:
170115078cd4SMichael Lange + dm       - The source DMPlex object
1702d8d19677SJose E. Roman - sf       - The star forest communication context describing the migration pattern
170315078cd4SMichael Lange 
170415078cd4SMichael Lange   Output Parameter:
1705d8d19677SJose E. Roman . targetDM - The target DMPlex object
170615078cd4SMichael Lange 
1707b9f40539SMichael Lange   Level: intermediate
170815078cd4SMichael Lange 
1709db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
171015078cd4SMichael Lange @*/
1711d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
1712d71ae5a4SJacob Faibussowitsch {
1713b9f40539SMichael Lange   MPI_Comm               comm;
1714cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1715b9f40539SMichael Lange   PetscSF                sfPoint;
171615078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1717ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
171815078cd4SMichael Lange 
171915078cd4SMichael Lange   PetscFunctionBegin;
172015078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17219566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0));
17229566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
17239566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
17249566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(targetDM, dim));
17259566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
17269566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(targetDM, cdim));
172715078cd4SMichael Lange 
1728bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
17299566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
17309566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL));
1731bfb0467fSMichael Lange   if (nroots >= 0) {
1732b9f40539SMichael Lange     IS        isOriginal;
1733ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1734ac04eaf7SToby Isaac     PetscInt *numbering_orig, *numbering_new;
1735367003a6SStefano Zampini 
1736b9f40539SMichael Lange     /* Get the original point numbering */
17379566063dSJacob Faibussowitsch     PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal));
17389566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal));
17399566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size));
17409566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt **)&numbering_orig));
1741b9f40539SMichael Lange     /* Convert to positive global numbers */
17429371c9d4SSatish Balay     for (n = 0; n < size; n++) {
17439371c9d4SSatish Balay       if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n] + 1);
17449371c9d4SSatish Balay     }
1745b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
17469566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL));
17479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &numbering_new));
17489566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE));
17499566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE));
17509566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration));
17519566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt **)&numbering_orig));
17529566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isOriginal));
175315078cd4SMichael Lange   } else {
1754bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
17559566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration));
175615078cd4SMichael Lange   }
1757a5a902f7SVaclav Hapla   PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration"));
1758a5a902f7SVaclav Hapla   PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view"));
175915078cd4SMichael Lange   /* Migrate DM data to target DM */
17609566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM));
17619566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeLabels(dm, sf, targetDM));
17629566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM));
17639566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM));
17649566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogOriginal));
17659566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogMigration));
17669566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0));
17673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
176815078cd4SMichael Lange }
176915078cd4SMichael Lange 
17703b8f15a2SMatthew G. Knepley /*@C
177170034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
177270034214SMatthew G. Knepley 
1773d083f849SBarry Smith   Collective on dm
177470034214SMatthew G. Knepley 
1775064ec1f3Sprj-   Input Parameters:
177670034214SMatthew G. Knepley + dm  - The original DMPlex object
177770034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
177870034214SMatthew G. Knepley 
1779064ec1f3Sprj-   Output Parameters:
1780f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1781f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
178270034214SMatthew G. Knepley 
1783f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
178470034214SMatthew G. Knepley 
1785b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
178670034214SMatthew G. Knepley   representation on the mesh.
178770034214SMatthew G. Knepley 
178870034214SMatthew G. Knepley   Level: intermediate
178970034214SMatthew G. Knepley 
1790db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()`
179170034214SMatthew G. Knepley @*/
1792d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
1793d71ae5a4SJacob Faibussowitsch {
179470034214SMatthew G. Knepley   MPI_Comm         comm;
179515078cd4SMichael Lange   PetscPartitioner partitioner;
1796f8987ae8SMichael Lange   IS               cellPart;
1797f8987ae8SMichael Lange   PetscSection     cellPartSection;
1798cf86098cSMatthew G. Knepley   DM               dmCoord;
1799f8987ae8SMichael Lange   DMLabel          lblPartition, lblMigration;
1800874ddda9SLisandro Dalcin   PetscSF          sfMigration, sfStratified, sfPoint;
180198ba2d7fSLawrence Mitchell   PetscBool        flg, balance;
1802874ddda9SLisandro Dalcin   PetscMPIInt      rank, size;
180370034214SMatthew G. Knepley 
180470034214SMatthew G. Knepley   PetscFunctionBegin;
180570034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1806d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1807d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf, 3);
1808d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel, 4);
180970034214SMatthew G. Knepley 
18100c86c063SLisandro Dalcin   if (sf) *sf = NULL;
18110c86c063SLisandro Dalcin   *dmParallel = NULL;
18129566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
18139566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
18149566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
18153ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
181670034214SMatthew G. Knepley 
18179566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Distribute, dm, 0, 0, 0));
181815078cd4SMichael Lange   /* Create cell partition */
18199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0));
18209566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &cellPartSection));
18219566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm, &partitioner));
18229566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart));
18239566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartSelf, dm, 0, 0, 0));
1824f8987ae8SMichael Lange   {
1825f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1826825f8a23SLisandro Dalcin     IS              is;
1827825f8a23SLisandro Dalcin     PetscHSetI      ht;
1828f8987ae8SMichael Lange     const PetscInt *points;
18298e330a33SStefano Zampini     PetscInt       *iranks;
18308e330a33SStefano Zampini     PetscInt        pStart, pEnd, proc, npoints, poff = 0, nranks;
1831825f8a23SLisandro Dalcin 
18329566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition));
1833825f8a23SLisandro Dalcin     /* Preallocate strata */
18349566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
18359566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1836825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
18379566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
18389566063dSJacob Faibussowitsch       if (npoints) PetscCall(PetscHSetIAdd(ht, proc));
1839825f8a23SLisandro Dalcin     }
18409566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(ht, &nranks));
18419566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nranks, &iranks));
18429566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetElems(ht, &poff, iranks));
18439566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
18449566063dSJacob Faibussowitsch     PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks));
18459566063dSJacob Faibussowitsch     PetscCall(PetscFree(iranks));
1846825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
18479566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(cellPart, &points));
18489566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1849f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
18509566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
1851825f8a23SLisandro Dalcin       if (!npoints) continue;
18529566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff));
18539566063dSJacob Faibussowitsch       PetscCall(DMPlexClosurePoints_Private(dm, npoints, points + poff, &is));
18549566063dSJacob Faibussowitsch       PetscCall(DMLabelSetStratumIS(lblPartition, proc, is));
18559566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&is));
1856f8987ae8SMichael Lange     }
18579566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(cellPart, &points));
1858f8987ae8SMichael Lange   }
18599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartSelf, dm, 0, 0, 0));
18606e203dd9SStefano Zampini 
18619566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration));
18629566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration));
18639566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration));
18649566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified));
18659566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfMigration));
186643f7d02bSMichael Lange   sfMigration = sfStratified;
18679566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sfMigration));
18689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0));
18699566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-partition_view", &flg));
187070034214SMatthew G. Knepley   if (flg) {
18719566063dSJacob Faibussowitsch     PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm)));
18729566063dSJacob Faibussowitsch     PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm)));
187370034214SMatthew G. Knepley   }
1874f8987ae8SMichael Lange 
187515078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
18769566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmParallel));
18779566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*dmParallel, "Parallel Mesh"));
18789566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel));
187970034214SMatthew G. Knepley 
1880a157612eSMichael Lange   /* Build the point SF without overlap */
18819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
18829566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance));
18839566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint));
18849566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmParallel, sfPoint));
18855f06a3ddSJed Brown   PetscCall(DMPlexMigrateIsoperiodicFaceSF_Internal(dm, *dmParallel, sfMigration));
18869566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord));
18879566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
18889566063dSJacob Faibussowitsch   if (flg) PetscCall(PetscSFView(sfPoint, NULL));
188970034214SMatthew G. Knepley 
1890a157612eSMichael Lange   if (overlap > 0) {
189115078cd4SMichael Lange     DM                 dmOverlap;
189257f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
189357f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
189457f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
189515078cd4SMichael Lange     const PetscSFNode *oldRemote;
189615078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1897524e35f8SStefano Zampini 
1898a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
18999566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap));
19009566063dSJacob Faibussowitsch     PetscCall(DMDestroy(dmParallel));
1901a157612eSMichael Lange     *dmParallel = dmOverlap;
1902c389ea9fSToby Isaac     if (flg) {
19039566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n"));
19049566063dSJacob Faibussowitsch       PetscCall(PetscSFView(sfOverlap, NULL));
1905c389ea9fSToby Isaac     }
190643331d4aSMichael Lange 
1907f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
19089566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote));
19099566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL));
19109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &newRemote));
191157f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
191257f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
191357f290daSMatthew G. Knepley     if (oldLeaves) {
191473e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
19159566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(noldleaves, &permRemote));
191657f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
191757f290daSMatthew G. Knepley       oldRemote = permRemote;
191857f290daSMatthew G. Knepley     }
19199566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE));
19209566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE));
19219566063dSJacob Faibussowitsch     if (oldLeaves) PetscCall(PetscFree(oldRemote));
19229566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, &sfOverlapPoint));
19239566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER));
19249566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfOverlap));
19259566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfMigration));
192615078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1927c389ea9fSToby Isaac   }
1928bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
19299566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblPartition));
19309566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblMigration));
19319566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&cellPartSection));
19329566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellPart));
193345480ffeSMatthew G. Knepley   /* Copy discretization */
19349566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *dmParallel));
193566fe0bfeSMatthew G. Knepley   /* Create sfNatural */
193666fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
193766fe0bfeSMatthew G. Knepley     PetscSection section;
193866fe0bfeSMatthew G. Knepley 
1939fc6a3818SBlaise Bourdin     PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE));
1940fc6a3818SBlaise Bourdin     PetscCall(DMGetLocalSection(dm, &section));
1941fc6a3818SBlaise Bourdin 
19428aee0f92SAlexis Marboeuf     /* First DM with useNatural = PETSC_TRUE is considered natural */
19438aee0f92SAlexis Marboeuf     /* sfMigration and sfNatural are respectively the point and dofs SFs mapping to this natural DM */
1944fc6a3818SBlaise Bourdin     /* Compose with a previous sfNatural if present */
1945fc6a3818SBlaise Bourdin     if (dm->sfNatural) {
1946fc6a3818SBlaise Bourdin       PetscSF natSF;
1947fc6a3818SBlaise Bourdin 
1948fc6a3818SBlaise Bourdin       PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &natSF));
1949fc6a3818SBlaise Bourdin       PetscCall(PetscSFCompose(dm->sfNatural, natSF, &(*dmParallel)->sfNatural));
1950fc6a3818SBlaise Bourdin       PetscCall(PetscSFDestroy(&natSF));
1951fc6a3818SBlaise Bourdin     } else {
1952fc6a3818SBlaise Bourdin       PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural));
1953fc6a3818SBlaise Bourdin     }
19548aee0f92SAlexis Marboeuf     /* Compose with a previous sfMigration if present */
19558aee0f92SAlexis Marboeuf     if (dm->sfMigration) {
19568aee0f92SAlexis Marboeuf       PetscSF naturalPointSF;
19578aee0f92SAlexis Marboeuf 
19588aee0f92SAlexis Marboeuf       PetscCall(PetscSFCompose(dm->sfMigration, sfMigration, &naturalPointSF));
19598aee0f92SAlexis Marboeuf       PetscCall(PetscSFDestroy(&sfMigration));
19608aee0f92SAlexis Marboeuf       sfMigration = naturalPointSF;
19618aee0f92SAlexis Marboeuf     }
196266fe0bfeSMatthew G. Knepley   }
19635de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel));
1964721cbd76SMatthew G. Knepley   /* Cleanup */
19659371c9d4SSatish Balay   if (sf) {
19669371c9d4SSatish Balay     *sf = sfMigration;
19679371c9d4SSatish Balay   } else PetscCall(PetscSFDestroy(&sfMigration));
19689566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
19699566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Distribute, dm, 0, 0, 0));
19703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
197170034214SMatthew G. Knepley }
1972a157612eSMichael Lange 
1973a157612eSMichael Lange /*@C
197424cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1975a157612eSMichael Lange 
1976d083f849SBarry Smith   Collective on dm
1977a157612eSMichael Lange 
1978064ec1f3Sprj-   Input Parameters:
1979064ec1f3Sprj- + dm  - The non-overlapping distributed DMPlex object
198057fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1981a157612eSMichael Lange 
1982064ec1f3Sprj-   Output Parameters:
1983a157612eSMichael Lange + sf - The PetscSF used for point distribution
1984a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1985a157612eSMichael Lange 
1986dccdeccaSVaclav Hapla   Notes:
1987dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1988a157612eSMichael Lange 
1989b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1990a157612eSMichael Lange   representation on the mesh.
1991a157612eSMichael Lange 
1992c506a872SMatthew G. Knepley   Options Database Keys:
1993c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names
1994c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...>   - List of overlap label values
1995c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name>     - Label used to exclude points from overlap
1996c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int>      - Label value used to exclude points from overlap
1997c506a872SMatthew G. Knepley 
1998dccdeccaSVaclav Hapla   Level: advanced
1999a157612eSMichael Lange 
2000db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()`
2001a157612eSMichael Lange @*/
2002d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
2003d71ae5a4SJacob Faibussowitsch {
2004c506a872SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
2005a157612eSMichael Lange   MPI_Comm     comm;
20063567eaeeSMatthew G. Knepley   PetscMPIInt  size, rank;
2007a157612eSMichael Lange   PetscSection rootSection, leafSection;
2008a157612eSMichael Lange   IS           rootrank, leafrank;
2009cf86098cSMatthew G. Knepley   DM           dmCoord;
2010a9f1d5b2SMichael Lange   DMLabel      lblOverlap;
2011f5bf2dbfSMichael Lange   PetscSF      sfOverlap, sfStratified, sfPoint;
2012a157612eSMichael Lange 
2013a157612eSMichael Lange   PetscFunctionBegin;
2014a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
201557fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
2016a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
2017a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
2018a157612eSMichael Lange 
20190c86c063SLisandro Dalcin   if (sf) *sf = NULL;
20200c86c063SLisandro Dalcin   *dmOverlap = NULL;
20219566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
20229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
20239566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
20243ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
2025c506a872SMatthew G. Knepley   {
2026c506a872SMatthew G. Knepley     // We need to get options for the _already_distributed mesh, so it must be done here
2027c506a872SMatthew G. Knepley     PetscInt    overlap;
2028c506a872SMatthew G. Knepley     const char *prefix;
2029c506a872SMatthew G. Knepley     char        oldPrefix[PETSC_MAX_PATH_LEN];
2030a157612eSMichael Lange 
2031c506a872SMatthew G. Knepley     oldPrefix[0] = '\0';
2032c506a872SMatthew G. Knepley     PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix));
2033c506a872SMatthew G. Knepley     PetscCall(PetscStrcpy(oldPrefix, prefix));
2034c506a872SMatthew G. Knepley     PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, "dist_"));
2035c506a872SMatthew G. Knepley     PetscCall(DMPlexGetOverlap(dm, &overlap));
2036c506a872SMatthew G. Knepley     PetscObjectOptionsBegin((PetscObject)dm);
2037dbbe0bcdSBarry Smith     PetscCall(DMSetFromOptions_Overlap_Plex(dm, PetscOptionsObject, &overlap));
2038c506a872SMatthew G. Knepley     PetscOptionsEnd();
2039c506a872SMatthew G. Knepley     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, oldPrefix[0] == '\0' ? NULL : oldPrefix));
2040c506a872SMatthew G. Knepley   }
20419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
2042a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
20439566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0));
20449566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &rootSection));
20459566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &leafSection));
20469566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank));
2047c506a872SMatthew G. Knepley   if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
2048c506a872SMatthew G. Knepley   else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
2049a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
20509566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap));
20519566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified));
20529566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfOverlap));
2053a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
20549566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)sfOverlap, "Overlap SF"));
20559566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sfOverlap));
2056a9f1d5b2SMichael Lange 
20579566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&rootSection));
20589566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&leafSection));
20599566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&rootrank));
20609566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&leafrank));
20619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0));
2062a157612eSMichael Lange 
2063a157612eSMichael Lange   /* Build the overlapping DM */
20649566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmOverlap));
20659566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*dmOverlap, "Parallel Mesh"));
20669566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap));
2067cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
206860667520SVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap));
2069f5bf2dbfSMichael Lange   /* Build the new point SF */
20709566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint));
20719566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmOverlap, sfPoint));
20729566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord));
20739566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
20746858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinateDM(*dmOverlap, &dmCoord));
20756858538eSMatthew G. Knepley   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
20769566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
2077a157612eSMichael Lange   /* Cleanup overlap partition */
20789566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblOverlap));
2079a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
20809566063dSJacob Faibussowitsch   else PetscCall(PetscSFDestroy(&sfOverlap));
20819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
20823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2083a157612eSMichael Lange }
20846462276dSToby Isaac 
2085d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap)
2086d71ae5a4SJacob Faibussowitsch {
2087cb54e036SVaclav Hapla   DM_Plex *mesh = (DM_Plex *)dm->data;
2088cb54e036SVaclav Hapla 
2089cb54e036SVaclav Hapla   PetscFunctionBegin;
2090cb54e036SVaclav Hapla   *overlap = mesh->overlap;
20913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2092cb54e036SVaclav Hapla }
2093cb54e036SVaclav Hapla 
2094d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap)
2095d71ae5a4SJacob Faibussowitsch {
209660667520SVaclav Hapla   DM_Plex *mesh    = NULL;
209760667520SVaclav Hapla   DM_Plex *meshSrc = NULL;
209860667520SVaclav Hapla 
209960667520SVaclav Hapla   PetscFunctionBegin;
210060667520SVaclav Hapla   PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX);
210160667520SVaclav Hapla   mesh          = (DM_Plex *)dm->data;
210260667520SVaclav Hapla   mesh->overlap = overlap;
210360667520SVaclav Hapla   if (dmSrc) {
210460667520SVaclav Hapla     PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX);
210560667520SVaclav Hapla     meshSrc = (DM_Plex *)dmSrc->data;
210660667520SVaclav Hapla     mesh->overlap += meshSrc->overlap;
210760667520SVaclav Hapla   }
21083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
210960667520SVaclav Hapla }
211060667520SVaclav Hapla 
2111cb54e036SVaclav Hapla /*@
2112c506a872SMatthew G. Knepley   DMPlexGetOverlap - Get the width of the cell overlap
2113cb54e036SVaclav Hapla 
2114cb54e036SVaclav Hapla   Not collective
2115cb54e036SVaclav Hapla 
2116cb54e036SVaclav Hapla   Input Parameter:
2117cb54e036SVaclav Hapla . dm   - The DM
2118cb54e036SVaclav Hapla 
2119064ec1f3Sprj-   Output Parameter:
2120c506a872SMatthew G. Knepley . overlap - the width of the cell overlap
2121cb54e036SVaclav Hapla 
2122cb54e036SVaclav Hapla   Level: intermediate
2123cb54e036SVaclav Hapla 
2124c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()`
2125cb54e036SVaclav Hapla @*/
2126d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap)
2127d71ae5a4SJacob Faibussowitsch {
2128cb54e036SVaclav Hapla   PetscFunctionBegin;
2129cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2130c506a872SMatthew G. Knepley   PetscValidIntPointer(overlap, 2);
2131cac4c232SBarry Smith   PetscUseMethod(dm, "DMPlexGetOverlap_C", (DM, PetscInt *), (dm, overlap));
21323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2133cb54e036SVaclav Hapla }
2134cb54e036SVaclav Hapla 
2135c506a872SMatthew G. Knepley /*@
2136c506a872SMatthew G. Knepley   DMPlexSetOverlap - Set the width of the cell overlap
2137c506a872SMatthew G. Knepley 
2138c506a872SMatthew G. Knepley   Logically collective
2139c506a872SMatthew G. Knepley 
2140c506a872SMatthew G. Knepley   Input Parameters:
2141c506a872SMatthew G. Knepley + dm      - The DM
2142c506a872SMatthew G. Knepley . dmSrc   - The DM that produced this one, or NULL
2143c506a872SMatthew G. Knepley - overlap - the width of the cell overlap
2144c506a872SMatthew G. Knepley 
2145c506a872SMatthew G. Knepley   Note:
2146c506a872SMatthew G. Knepley   The overlap from dmSrc is added to dm
2147c506a872SMatthew G. Knepley 
2148c506a872SMatthew G. Knepley   Level: intermediate
2149c506a872SMatthew G. Knepley 
2150c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()`
2151c506a872SMatthew G. Knepley @*/
2152d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap)
2153d71ae5a4SJacob Faibussowitsch {
2154c506a872SMatthew G. Knepley   PetscFunctionBegin;
2155c506a872SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2156c506a872SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 3);
2157c506a872SMatthew G. Knepley   PetscTryMethod(dm, "DMPlexSetOverlap_C", (DM, DM, PetscInt), (dm, dmSrc, overlap));
21583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2159c506a872SMatthew G. Knepley }
2160c506a872SMatthew G. Knepley 
2161d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist)
2162d71ae5a4SJacob Faibussowitsch {
2163e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
2164e600fa54SMatthew G. Knepley 
2165e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2166e600fa54SMatthew G. Knepley   mesh->distDefault = dist;
21673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2168e600fa54SMatthew G. Knepley }
2169e600fa54SMatthew G. Knepley 
2170e600fa54SMatthew G. Knepley /*@
2171e600fa54SMatthew G. Knepley   DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default
2172e600fa54SMatthew G. Knepley 
2173e600fa54SMatthew G. Knepley   Logically collective
2174e600fa54SMatthew G. Knepley 
2175e600fa54SMatthew G. Knepley   Input Parameters:
2176e600fa54SMatthew G. Knepley + dm   - The DM
2177e600fa54SMatthew G. Knepley - dist - Flag for distribution
2178e600fa54SMatthew G. Knepley 
2179e600fa54SMatthew G. Knepley   Level: intermediate
2180e600fa54SMatthew G. Knepley 
21819e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()`
2182e600fa54SMatthew G. Knepley @*/
2183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist)
2184d71ae5a4SJacob Faibussowitsch {
2185e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2186e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2187e600fa54SMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, dist, 2);
2188cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexDistributeSetDefault_C", (DM, PetscBool), (dm, dist));
21893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2190e600fa54SMatthew G. Knepley }
2191e600fa54SMatthew G. Knepley 
2192d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist)
2193d71ae5a4SJacob Faibussowitsch {
2194e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
2195e600fa54SMatthew G. Knepley 
2196e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2197e600fa54SMatthew G. Knepley   *dist = mesh->distDefault;
21983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2199e600fa54SMatthew G. Knepley }
2200e600fa54SMatthew G. Knepley 
2201e600fa54SMatthew G. Knepley /*@
2202e600fa54SMatthew G. Knepley   DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default
2203e600fa54SMatthew G. Knepley 
2204e600fa54SMatthew G. Knepley   Not collective
2205e600fa54SMatthew G. Knepley 
2206e600fa54SMatthew G. Knepley   Input Parameter:
2207e600fa54SMatthew G. Knepley . dm   - The DM
2208e600fa54SMatthew G. Knepley 
2209e600fa54SMatthew G. Knepley   Output Parameter:
2210e600fa54SMatthew G. Knepley . dist - Flag for distribution
2211e600fa54SMatthew G. Knepley 
2212e600fa54SMatthew G. Knepley   Level: intermediate
2213e600fa54SMatthew G. Knepley 
22149e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()`
2215e600fa54SMatthew G. Knepley @*/
2216d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist)
2217d71ae5a4SJacob Faibussowitsch {
2218e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2219e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2220e600fa54SMatthew G. Knepley   PetscValidBoolPointer(dist, 2);
2221cac4c232SBarry Smith   PetscUseMethod(dm, "DMPlexDistributeGetDefault_C", (DM, PetscBool *), (dm, dist));
22223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2223e600fa54SMatthew G. Knepley }
2224e600fa54SMatthew G. Knepley 
22256462276dSToby Isaac /*@C
22266462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
22276462276dSToby Isaac   root process of the original's communicator.
22286462276dSToby Isaac 
2229d083f849SBarry Smith   Collective on dm
223083655b49SVáclav Hapla 
2231064ec1f3Sprj-   Input Parameter:
22326462276dSToby Isaac . dm - the original DMPlex object
22336462276dSToby Isaac 
22346462276dSToby Isaac   Output Parameters:
2235a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2236a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
22376462276dSToby Isaac 
22386462276dSToby Isaac   Level: intermediate
22396462276dSToby Isaac 
2240db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()`
22416462276dSToby Isaac @*/
2242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
2243d71ae5a4SJacob Faibussowitsch {
22446462276dSToby Isaac   MPI_Comm         comm;
22456462276dSToby Isaac   PetscMPIInt      size;
22466462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
22476462276dSToby Isaac 
22486462276dSToby Isaac   PetscFunctionBegin;
22496462276dSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2250064a246eSJacob Faibussowitsch   PetscValidPointer(gatherMesh, 3);
22510c86c063SLisandro Dalcin   *gatherMesh = NULL;
2252a13df41bSStefano Zampini   if (sf) *sf = NULL;
22536462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
22549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
22553ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
22569566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm, &oldPart));
22579566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldPart));
22589566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerCreate(comm, &gatherPart));
22599566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerSetType(gatherPart, PETSCPARTITIONERGATHER));
22609566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm, gatherPart));
22619566063dSJacob Faibussowitsch   PetscCall(DMPlexDistribute(dm, 0, sf, gatherMesh));
2262a13df41bSStefano Zampini 
22639566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm, oldPart));
22649566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&gatherPart));
22659566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&oldPart));
22663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22676462276dSToby Isaac }
22686462276dSToby Isaac 
22696462276dSToby Isaac /*@C
22706462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
22716462276dSToby Isaac 
2272d083f849SBarry Smith   Collective on dm
227383655b49SVáclav Hapla 
2274064ec1f3Sprj-   Input Parameter:
22756462276dSToby Isaac . dm - the original DMPlex object
22766462276dSToby Isaac 
22776462276dSToby Isaac   Output Parameters:
2278a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2279a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
22806462276dSToby Isaac 
22816462276dSToby Isaac   Level: intermediate
22826462276dSToby Isaac 
2283db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()`
22846462276dSToby Isaac @*/
2285d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
2286d71ae5a4SJacob Faibussowitsch {
22876462276dSToby Isaac   MPI_Comm     comm;
22886462276dSToby Isaac   PetscMPIInt  size, rank;
22896462276dSToby Isaac   PetscInt     pStart, pEnd, p;
22906462276dSToby Isaac   PetscInt     numPoints = -1;
2291a13df41bSStefano Zampini   PetscSF      migrationSF, sfPoint, gatherSF;
22926462276dSToby Isaac   DM           gatherDM, dmCoord;
22936462276dSToby Isaac   PetscSFNode *points;
22946462276dSToby Isaac 
22956462276dSToby Isaac   PetscFunctionBegin;
22966462276dSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2297064a246eSJacob Faibussowitsch   PetscValidPointer(redundantMesh, 3);
22980c86c063SLisandro Dalcin   *redundantMesh = NULL;
22996462276dSToby Isaac   comm           = PetscObjectComm((PetscObject)dm);
23009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
230168dbc166SMatthew G. Knepley   if (size == 1) {
23029566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
230368dbc166SMatthew G. Knepley     *redundantMesh = dm;
2304a13df41bSStefano Zampini     if (sf) *sf = NULL;
23053ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
230668dbc166SMatthew G. Knepley   }
23079566063dSJacob Faibussowitsch   PetscCall(DMPlexGetGatherDM(dm, &gatherSF, &gatherDM));
23083ba16761SJacob Faibussowitsch   if (!gatherDM) PetscFunctionReturn(PETSC_SUCCESS);
23099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
23109566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(gatherDM, &pStart, &pEnd));
23116462276dSToby Isaac   numPoints = pEnd - pStart;
23129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numPoints, 1, MPIU_INT, 0, comm));
23139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numPoints, &points));
23149566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &migrationSF));
23156462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
23166462276dSToby Isaac     points[p].index = p;
23176462276dSToby Isaac     points[p].rank  = 0;
23186462276dSToby Isaac   }
23199566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(migrationSF, pEnd - pStart, numPoints, NULL, PETSC_OWN_POINTER, points, PETSC_OWN_POINTER));
23209566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, redundantMesh));
23219566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*redundantMesh, "Redundant Mesh"));
23229566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh));
23232e28cf0cSVaclav Hapla   /* This is to express that all point are in overlap */
23242e28cf0cSVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT));
23259566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint));
23269566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*redundantMesh, sfPoint));
23279566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord));
23289566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
23299566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
2330a13df41bSStefano Zampini   if (sf) {
2331a13df41bSStefano Zampini     PetscSF tsf;
2332a13df41bSStefano Zampini 
23339566063dSJacob Faibussowitsch     PetscCall(PetscSFCompose(gatherSF, migrationSF, &tsf));
23349566063dSJacob Faibussowitsch     PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf));
23359566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&tsf));
2336a13df41bSStefano Zampini   }
23379566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&migrationSF));
23389566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&gatherSF));
23399566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&gatherDM));
23409566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *redundantMesh));
23415de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh));
23423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23436462276dSToby Isaac }
23445fa78c88SVaclav Hapla 
23455fa78c88SVaclav Hapla /*@
23465fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
23475fa78c88SVaclav Hapla 
23485fa78c88SVaclav Hapla   Collective
23495fa78c88SVaclav Hapla 
23505fa78c88SVaclav Hapla   Input Parameter:
23515fa78c88SVaclav Hapla . dm      - The DM object
23525fa78c88SVaclav Hapla 
23535fa78c88SVaclav Hapla   Output Parameter:
23545fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
23555fa78c88SVaclav Hapla 
23565fa78c88SVaclav Hapla   Level: intermediate
23575fa78c88SVaclav Hapla 
23585fa78c88SVaclav Hapla   Notes:
23595fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
23605fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
23615fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
23625fa78c88SVaclav Hapla 
2363db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()`
23645fa78c88SVaclav Hapla @*/
2365d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed)
2366d71ae5a4SJacob Faibussowitsch {
23675fa78c88SVaclav Hapla   PetscInt    pStart, pEnd, count;
23685fa78c88SVaclav Hapla   MPI_Comm    comm;
236935d70e31SStefano Zampini   PetscMPIInt size;
23705fa78c88SVaclav Hapla 
23715fa78c88SVaclav Hapla   PetscFunctionBegin;
23725fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2373dadcf809SJacob Faibussowitsch   PetscValidBoolPointer(distributed, 2);
23749566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
23759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
23769371c9d4SSatish Balay   if (size == 1) {
23779371c9d4SSatish Balay     *distributed = PETSC_FALSE;
23783ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
23799371c9d4SSatish Balay   }
23809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
238135d70e31SStefano Zampini   count = (pEnd - pStart) > 0 ? 1 : 0;
23829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm));
23835fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
23843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23855fa78c88SVaclav Hapla }
23861d1f2f2aSksagiyam 
23871d1f2f2aSksagiyam /*@C
23881d1f2f2aSksagiyam   DMPlexDistributionSetName - Set the name of the specific parallel distribution
23891d1f2f2aSksagiyam 
23901d1f2f2aSksagiyam   Input Parameters:
23911d1f2f2aSksagiyam + dm   - The DM
23921d1f2f2aSksagiyam - name - The name of the specific parallel distribution
23931d1f2f2aSksagiyam 
23941d1f2f2aSksagiyam   Note:
23951d1f2f2aSksagiyam   If distribution name is set when saving, DMPlexTopologyView() saves the plex's
23961d1f2f2aSksagiyam   parallel distribution (i.e., partition, ownership, and local ordering of points) under
23971d1f2f2aSksagiyam   this name. Conversely, if distribution name is set when loading, DMPlexTopologyLoad()
23981d1f2f2aSksagiyam   loads the parallel distribution stored in file under this name.
23991d1f2f2aSksagiyam 
24001d1f2f2aSksagiyam   Level: developer
24011d1f2f2aSksagiyam 
24021d1f2f2aSksagiyam .seealso: `DMPlexDistributionGetName()`, `DMPlexTopologyView()`, `DMPlexTopologyLoad()`
24031d1f2f2aSksagiyam @*/
2404d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributionSetName(DM dm, const char name[])
2405d71ae5a4SJacob Faibussowitsch {
24061d1f2f2aSksagiyam   DM_Plex *mesh = (DM_Plex *)dm->data;
24071d1f2f2aSksagiyam 
24081d1f2f2aSksagiyam   PetscFunctionBegin;
24091d1f2f2aSksagiyam   PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX);
24101d1f2f2aSksagiyam   if (name) PetscValidCharPointer(name, 2);
24111d1f2f2aSksagiyam   PetscCall(PetscFree(mesh->distributionName));
24121d1f2f2aSksagiyam   PetscCall(PetscStrallocpy(name, &mesh->distributionName));
24133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24141d1f2f2aSksagiyam }
24151d1f2f2aSksagiyam 
24161d1f2f2aSksagiyam /*@C
24171d1f2f2aSksagiyam   DMPlexDistributionGetName - Retrieve the name of the specific parallel distribution
24181d1f2f2aSksagiyam 
24191d1f2f2aSksagiyam   Input Parameter:
24201d1f2f2aSksagiyam . dm - The DM
24211d1f2f2aSksagiyam 
24221d1f2f2aSksagiyam   Output Parameter:
24231d1f2f2aSksagiyam . name - The name of the specific parallel distribution
24241d1f2f2aSksagiyam 
24251d1f2f2aSksagiyam   Note:
24261d1f2f2aSksagiyam   If distribution name is set when saving, DMPlexTopologyView() saves the plex's
24271d1f2f2aSksagiyam   parallel distribution (i.e., partition, ownership, and local ordering of points) under
24281d1f2f2aSksagiyam   this name. Conversely, if distribution name is set when loading, DMPlexTopologyLoad()
24291d1f2f2aSksagiyam   loads the parallel distribution stored in file under this name.
24301d1f2f2aSksagiyam 
24311d1f2f2aSksagiyam   Level: developer
24321d1f2f2aSksagiyam 
24331d1f2f2aSksagiyam .seealso: `DMPlexDistributionSetName()`, `DMPlexTopologyView()`, `DMPlexTopologyLoad()`
24341d1f2f2aSksagiyam @*/
2435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributionGetName(DM dm, const char *name[])
2436d71ae5a4SJacob Faibussowitsch {
24371d1f2f2aSksagiyam   DM_Plex *mesh = (DM_Plex *)dm->data;
24381d1f2f2aSksagiyam 
24391d1f2f2aSksagiyam   PetscFunctionBegin;
24401d1f2f2aSksagiyam   PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX);
24411d1f2f2aSksagiyam   PetscValidPointer(name, 2);
24421d1f2f2aSksagiyam   *name = mesh->distributionName;
24433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24441d1f2f2aSksagiyam }
2445