1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()` 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 396b867d5aSJose E. Roman + user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()` 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97064a246eSJacob Faibussowitsch PetscValidBoolPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley 10770034214SMatthew G. Knepley PetscFunctionBeginHot; 1089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 1104b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1114b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11270034214SMatthew G. Knepley const PetscInt *support = NULL; 11370034214SMatthew G. Knepley PetscInt supportSize, s, q; 11470034214SMatthew G. Knepley 1159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 11770034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 118527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 11970034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12070034214SMatthew G. Knepley } 12163a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 12270034214SMatthew G. Knepley } 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley *adjSize = numAdj; 12570034214SMatthew G. Knepley PetscFunctionReturn(0); 12670034214SMatthew G. Knepley } 12770034214SMatthew G. Knepley 12870034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 12970034214SMatthew G. Knepley { 13070034214SMatthew G. Knepley const PetscInt *support = NULL; 13170034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13270034214SMatthew G. Knepley 13370034214SMatthew G. Knepley PetscFunctionBeginHot; 1349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 1359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 1364b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1374b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 13870034214SMatthew G. Knepley const PetscInt *cone = NULL; 13970034214SMatthew G. Knepley PetscInt coneSize, c, q; 14070034214SMatthew G. Knepley 1419566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 1429566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 14370034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 144527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14570034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14670034214SMatthew G. Knepley } 14763a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley } 15070034214SMatthew G. Knepley *adjSize = numAdj; 15170034214SMatthew G. Knepley PetscFunctionReturn(0); 15270034214SMatthew G. Knepley } 15370034214SMatthew G. Knepley 15470034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15570034214SMatthew G. Knepley { 15670034214SMatthew G. Knepley PetscInt *star = NULL; 15770034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 15870034214SMatthew G. Knepley 15970034214SMatthew G. Knepley PetscFunctionBeginHot; 1609566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star)); 16170034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16270034214SMatthew G. Knepley const PetscInt *closure = NULL; 16370034214SMatthew G. Knepley PetscInt closureSize, c, q; 16470034214SMatthew G. Knepley 1659566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure)); 16670034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 167527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 16870034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 16970034214SMatthew G. Knepley } 17063a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 17170034214SMatthew G. Knepley } 1729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure)); 17370034214SMatthew G. Knepley } 1749566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star)); 17570034214SMatthew G. Knepley *adjSize = numAdj; 17670034214SMatthew G. Knepley PetscFunctionReturn(0); 17770034214SMatthew G. Knepley } 17870034214SMatthew G. Knepley 1795b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18070034214SMatthew G. Knepley { 18179bad331SMatthew G. Knepley static PetscInt asiz = 0; 1828b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1838b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1848b0b4c70SToby Isaac PetscInt maxAdjSize; 1858b0b4c70SToby Isaac PetscSection aSec = NULL; 1868b0b4c70SToby Isaac IS aIS = NULL; 1878b0b4c70SToby Isaac const PetscInt *anchors; 1883c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 18970034214SMatthew G. Knepley 19070034214SMatthew G. Knepley PetscFunctionBeginHot; 1915b317d89SToby Isaac if (useAnchors) { 1929566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS)); 1938b0b4c70SToby Isaac if (aSec) { 1949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(aSec,&maxAnchors)); 19524c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 1969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(aSec,&aStart,&aEnd)); 1979566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS,&anchors)); 1988b0b4c70SToby Isaac } 1998b0b4c70SToby Isaac } 20079bad331SMatthew G. Knepley if (!*adj) { 20124c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20279bad331SMatthew G. Knepley 2039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart,&pEnd)); 2049566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 205412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 2069566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS)); 20724c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 20824c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 20924c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2108b0b4c70SToby Isaac asiz *= maxAnchors; 21124c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 2129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(asiz,adj)); 21379bad331SMatthew G. Knepley } 21479bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2158b0b4c70SToby Isaac maxAdjSize = *adjSize; 2163c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2179566063dSJacob Faibussowitsch PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx)); 2183c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 2199566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj)); 22070034214SMatthew G. Knepley } else if (useCone) { 2219566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj)); 22270034214SMatthew G. Knepley } else { 2239566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj)); 22470034214SMatthew G. Knepley } 2255b317d89SToby Isaac if (useAnchors && aSec) { 2268b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2278b0b4c70SToby Isaac PetscInt numAdj = origSize; 2288b0b4c70SToby Isaac PetscInt i = 0, j; 2298b0b4c70SToby Isaac PetscInt *orig = *adj; 2308b0b4c70SToby Isaac 2318b0b4c70SToby Isaac while (i < origSize) { 2328b0b4c70SToby Isaac PetscInt p = orig[i]; 2338b0b4c70SToby Isaac PetscInt aDof = 0; 2348b0b4c70SToby Isaac 2358b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(aSec,p,&aDof)); 2378b0b4c70SToby Isaac } 2388b0b4c70SToby Isaac if (aDof) { 2398b0b4c70SToby Isaac PetscInt aOff; 2408b0b4c70SToby Isaac PetscInt s, q; 2418b0b4c70SToby Isaac 2428b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2438b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2448b0b4c70SToby Isaac } 2458b0b4c70SToby Isaac origSize--; 2468b0b4c70SToby Isaac numAdj--; 2479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec,p,&aOff)); 2488b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 249527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2508b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2518b0b4c70SToby Isaac } 25263a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 2538b0b4c70SToby Isaac } 2548b0b4c70SToby Isaac } 2558b0b4c70SToby Isaac else { 2568b0b4c70SToby Isaac i++; 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac } 2598b0b4c70SToby Isaac *adjSize = numAdj; 2609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS,&anchors)); 2618b0b4c70SToby Isaac } 26270034214SMatthew G. Knepley PetscFunctionReturn(0); 26370034214SMatthew G. Knepley } 26470034214SMatthew G. Knepley 26570034214SMatthew G. Knepley /*@ 26670034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 26770034214SMatthew G. Knepley 26870034214SMatthew G. Knepley Input Parameters: 26970034214SMatthew G. Knepley + dm - The DM object 2706b867d5aSJose E. Roman - p - The point 27170034214SMatthew G. Knepley 2726b867d5aSJose E. Roman Input/Output Parameters: 2736b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE; 2746b867d5aSJose E. Roman on output the number of adjacent points 2756b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize; 2766b867d5aSJose E. Roman on output contains the adjacent points 27770034214SMatthew G. Knepley 27870034214SMatthew G. Knepley Level: advanced 27970034214SMatthew G. Knepley 28095452b02SPatrick Sanan Notes: 28195452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28270034214SMatthew G. Knepley 283db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()` 28470034214SMatthew G. Knepley @*/ 28570034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 28670034214SMatthew G. Knepley { 2871cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 28870034214SMatthew G. Knepley 28970034214SMatthew G. Knepley PetscFunctionBeginHot; 29070034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 291dadcf809SJacob Faibussowitsch PetscValidIntPointer(adjSize,3); 29270034214SMatthew G. Knepley PetscValidPointer(adj,4); 2939566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 2949566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 2959566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj)); 29670034214SMatthew G. Knepley PetscFunctionReturn(0); 29770034214SMatthew G. Knepley } 29808633170SToby Isaac 299b0a623aaSMatthew G. Knepley /*@ 300b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 301b0a623aaSMatthew G. Knepley 302d083f849SBarry Smith Collective on dm 303b0a623aaSMatthew G. Knepley 304b0a623aaSMatthew G. Knepley Input Parameters: 305b0a623aaSMatthew G. Knepley + dm - The DM 3066b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity 3076b867d5aSJose E. Roman . rootRankSection - 3086b867d5aSJose E. Roman . rootRanks - 3096b867d5aSJose E. Roman . leftRankSection - 3106b867d5aSJose E. Roman - leafRanks - 311b0a623aaSMatthew G. Knepley 312b0a623aaSMatthew G. Knepley Output Parameters: 313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 314b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley Level: developer 317b0a623aaSMatthew G. Knepley 318db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()` 319b0a623aaSMatthew G. Knepley @*/ 320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 321b0a623aaSMatthew G. Knepley { 322b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 323b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 324b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 325b0a623aaSMatthew G. Knepley const PetscInt *nranks; 326b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 327b0a623aaSMatthew G. Knepley PetscBT neighbors; 328b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3299852e123SBarry Smith PetscMPIInt size, proc, rank; 330b0a623aaSMatthew G. Knepley 331b0a623aaSMatthew G. Knepley PetscFunctionBegin; 332b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 333b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 334064a246eSJacob Faibussowitsch if (processRanks) {PetscValidPointer(processRanks, 7);} 335064a246eSJacob Faibussowitsch if (sfProcess) {PetscValidPointer(sfProcess, 8);} 3369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size)); 3379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 3389566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints)); 3399566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(size, &neighbors)); 3409566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(size, neighbors)); 341b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 3429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd)); 3439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootRanks, &nranks)); 344b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 345b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 346b0a623aaSMatthew G. Knepley 3479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof)); 3489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff)); 3499566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n])); 350b0a623aaSMatthew G. Knepley } 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootRanks, &nranks)); 352b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 3539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd)); 3549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafRanks, &nranks)); 355b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 356b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 357b0a623aaSMatthew G. Knepley 3589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof)); 3599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff)); 3609566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n])); 361b0a623aaSMatthew G. Knepley } 3629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafRanks, &nranks)); 363b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 364b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 365b0a623aaSMatthew G. Knepley /* Calculate edges */ 366b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3679852e123SBarry Smith for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 3689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &ranksNew)); 3699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &localPointsNew)); 3709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew)); 3719852e123SBarry Smith for (proc = 0, n = 0; proc < size; ++proc) { 372b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 373b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 374b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 375b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 376b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 377b0a623aaSMatthew G. Knepley ++n; 378b0a623aaSMatthew G. Knepley } 379b0a623aaSMatthew G. Knepley } 3809566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&neighbors)); 3819566063dSJacob Faibussowitsch if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks)); 3829566063dSJacob Faibussowitsch else PetscCall(PetscFree(ranksNew)); 383b0a623aaSMatthew G. Knepley if (sfProcess) { 3849566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess)); 3859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF")); 3869566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfProcess)); 3879566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER)); 388b0a623aaSMatthew G. Knepley } 389b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 390b0a623aaSMatthew G. Knepley } 391b0a623aaSMatthew G. Knepley 392b0a623aaSMatthew G. Knepley /*@ 393b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 394b0a623aaSMatthew G. Knepley 395d083f849SBarry Smith Collective on dm 396b0a623aaSMatthew G. Knepley 397b0a623aaSMatthew G. Knepley Input Parameter: 398b0a623aaSMatthew G. Knepley . dm - The DM 399b0a623aaSMatthew G. Knepley 400b0a623aaSMatthew G. Knepley Output Parameters: 401b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 402b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 403b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 404b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 405b0a623aaSMatthew G. Knepley 406b0a623aaSMatthew G. Knepley Level: developer 407b0a623aaSMatthew G. Knepley 408db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 409b0a623aaSMatthew G. Knepley @*/ 410b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 411b0a623aaSMatthew G. Knepley { 412b0a623aaSMatthew G. Knepley MPI_Comm comm; 413b0a623aaSMatthew G. Knepley PetscSF sfPoint; 414b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 415b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 416b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 417b0a623aaSMatthew G. Knepley PetscMPIInt rank; 418b0a623aaSMatthew G. Knepley 419b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 4219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4229566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4239566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 424b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 4259566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) rootSection, "Root Section")); 4269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd)); 4279566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 4289566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 4299566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p-pStart])); 4309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 431b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 4329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection, &nedges)); 4339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd-pStart, &myrank)); 4349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nedges, &remoterank)); 435b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 4369566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank)); 4379566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank)); 4389566063dSJacob Faibussowitsch PetscCall(PetscFree(myrank)); 4399566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank)); 440b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 4419566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) leafSection, "Leaf Section")); 4429566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank)); 443b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 444b0a623aaSMatthew G. Knepley } 445b0a623aaSMatthew G. Knepley 446*c506a872SMatthew G. Knepley #if 0 447*c506a872SMatthew G. Knepley static PetscErrorCode DMPlexCopyOverlapLabels(DM dm, DM ndm) 448*c506a872SMatthew G. Knepley { 449*c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 450*c506a872SMatthew G. Knepley DM_Plex *nmesh = (DM_Plex *) ndm->data; 451*c506a872SMatthew G. Knepley 452*c506a872SMatthew G. Knepley PetscFunctionBegin; 453*c506a872SMatthew G. Knepley if (mesh->numOvLabels) { 454*c506a872SMatthew G. Knepley const char *name; 455*c506a872SMatthew G. Knepley PetscInt l; 456*c506a872SMatthew G. Knepley 457*c506a872SMatthew G. Knepley nmesh->numOvLabels = mesh->numOvLabels; 458*c506a872SMatthew G. Knepley for (l = 0; l < mesh->numOvLabels; ++l) { 459*c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovLabels[l], &name)); 460*c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovLabels[l])); 461*c506a872SMatthew G. Knepley nmesh->ovValues[l] = mesh->ovValues[l]; 462*c506a872SMatthew G. Knepley } 463*c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovExLabel, &name)); 464*c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovExLabel)); 465*c506a872SMatthew G. Knepley nmesh->ovExValue = mesh->ovExValue; 466*c506a872SMatthew G. Knepley } 467*c506a872SMatthew G. Knepley PetscFunctionReturn(0); 468*c506a872SMatthew G. Knepley } 469*c506a872SMatthew G. Knepley #endif 470*c506a872SMatthew G. Knepley 471278397a0SMatthew G. Knepley /*@C 472*c506a872SMatthew G. Knepley DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes 473b0a623aaSMatthew G. Knepley 474d083f849SBarry Smith Collective on dm 475b0a623aaSMatthew G. Knepley 476b0a623aaSMatthew G. Knepley Input Parameters: 477b0a623aaSMatthew G. Knepley + dm - The DM 47824d039d7SMichael Lange . levels - Number of overlap levels 479b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 480b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 481b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 482b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 483b0a623aaSMatthew G. Knepley 484064ec1f3Sprj- Output Parameter: 485b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 486b0a623aaSMatthew G. Knepley 487b0a623aaSMatthew G. Knepley Level: developer 488b0a623aaSMatthew G. Knepley 489*c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 490b0a623aaSMatthew G. Knepley @*/ 491dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 492b0a623aaSMatthew G. Knepley { 493e540f424SMichael Lange MPI_Comm comm; 494b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 495874ddda9SLisandro Dalcin PetscSF sfPoint; 496b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 497b0a623aaSMatthew G. Knepley const PetscInt *local; 4981fd9873aSMichael Lange const PetscInt *nrank, *rrank; 499b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 5001fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 5019852e123SBarry Smith PetscMPIInt rank, size; 50231bc6364SLisandro Dalcin PetscBool flg; 503b0a623aaSMatthew G. Knepley 504b0a623aaSMatthew G. Knepley PetscFunctionBegin; 5056ba1a4c7SVaclav Hapla *ovLabel = NULL; 5069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 5079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5096ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 5109566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 5119566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 512d1674c6dSMatthew Knepley if (!levels) { 513d1674c6dSMatthew Knepley /* Add owned points */ 5149566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5159566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 516d1674c6dSMatthew Knepley PetscFunctionReturn(0); 517d1674c6dSMatthew Knepley } 5189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 5199566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 5209566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 521b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 522b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 523b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 524b0a623aaSMatthew G. Knepley 5259566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj)); 5269566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank)); 527b0a623aaSMatthew G. Knepley } 5289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootrank, &rrank)); 5299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafrank, &nrank)); 530b0a623aaSMatthew G. Knepley /* Handle roots */ 531b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 532b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 533b0a623aaSMatthew G. Knepley 534b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 535b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 5369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, p, &neighbors)); 537b0a623aaSMatthew G. Knepley if (neighbors) { 5389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection, p, &noff)); 5399566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 540b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 541b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 542b0a623aaSMatthew G. Knepley 543b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5449566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 545b0a623aaSMatthew G. Knepley } 546b0a623aaSMatthew G. Knepley } 547b0a623aaSMatthew G. Knepley } 548b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 5499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootSection, p, &neighbors)); 550b0a623aaSMatthew G. Knepley if (!neighbors) continue; 5519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootSection, p, &noff)); 5529566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 553b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 554b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 555b0a623aaSMatthew G. Knepley 556b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5579566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 558b0a623aaSMatthew G. Knepley } 559b0a623aaSMatthew G. Knepley } 5609566063dSJacob Faibussowitsch PetscCall(PetscFree(adj)); 5619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootrank, &rrank)); 5629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafrank, &nrank)); 56324d039d7SMichael Lange /* Add additional overlap levels */ 564be200f8dSMichael Lange for (l = 1; l < levels; l++) { 565be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 5669566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank)); 567be200f8dSMichael Lange /* Add next level of point donations to the label */ 5689566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank)); 569be200f8dSMichael Lange } 57026a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5719566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 5729566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg)); 573e540f424SMichael Lange if (flg) { 574825f8a23SLisandro Dalcin PetscViewer viewer; 5759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 5769566063dSJacob Faibussowitsch PetscCall(DMLabelView(ovAdjByRank, viewer)); 577b0a623aaSMatthew G. Knepley } 578874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 5799566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5809566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 581a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 5829566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 583e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 5849566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 5859566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 586e540f424SMichael Lange } 587e540f424SMichael Lange /* Clean up */ 5889566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&ovAdjByRank)); 589b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 590b0a623aaSMatthew G. Knepley } 59170034214SMatthew G. Knepley 592*c506a872SMatthew G. Knepley static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank) 593*c506a872SMatthew G. Knepley { 594*c506a872SMatthew G. Knepley PetscInt neighbors, el; 595*c506a872SMatthew G. Knepley 596*c506a872SMatthew G. Knepley PetscFunctionBegin; 597*c506a872SMatthew G. Knepley PetscCall(PetscSectionGetDof(section, p, &neighbors)); 598*c506a872SMatthew G. Knepley if (neighbors) { 599*c506a872SMatthew G. Knepley PetscInt *adj = NULL; 600*c506a872SMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, noff, n, a; 601*c506a872SMatthew G. Knepley PetscMPIInt rank; 602*c506a872SMatthew G. Knepley 603*c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 604*c506a872SMatthew G. Knepley PetscCall(PetscSectionGetOffset(section, p, &noff)); 605*c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 606*c506a872SMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 607*c506a872SMatthew G. Knepley const PetscInt remoteRank = ranks[noff+n]; 608*c506a872SMatthew G. Knepley 609*c506a872SMatthew G. Knepley if (remoteRank == rank) continue; 610*c506a872SMatthew G. Knepley for (a = 0; a < adjSize; ++a) { 611*c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 612*c506a872SMatthew G. Knepley 613*c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 614*c506a872SMatthew G. Knepley PetscInt exVal; 615*c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 616*c506a872SMatthew G. Knepley if (exVal == exValue[el]) {insert = PETSC_FALSE; break;} 617*c506a872SMatthew G. Knepley } 618*c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 619*c506a872SMatthew G. Knepley } 620*c506a872SMatthew G. Knepley } 621*c506a872SMatthew G. Knepley } 622*c506a872SMatthew G. Knepley PetscFunctionReturn(0); 623*c506a872SMatthew G. Knepley } 624*c506a872SMatthew G. Knepley 625*c506a872SMatthew G. Knepley /*@C 626*c506a872SMatthew G. Knepley DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes 627*c506a872SMatthew G. Knepley 628*c506a872SMatthew G. Knepley Collective on dm 629*c506a872SMatthew G. Knepley 630*c506a872SMatthew G. Knepley Input Parameters: 631*c506a872SMatthew G. Knepley + dm - The DM 632*c506a872SMatthew G. Knepley . numLabels - The number of labels to draw candidate points from 633*c506a872SMatthew G. Knepley . label - An array of labels containing candidate points 634*c506a872SMatthew G. Knepley . value - An array of label values marking the candidate points 635*c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion 636*c506a872SMatthew G. Knepley . exLabel - An array of labels indicating points to be excluded, or NULL 637*c506a872SMatthew G. Knepley . exValue - An array of label values to be excluded, or NULL 638*c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point 639*c506a872SMatthew G. Knepley . rootrank - The rank of each edge into the root point 640*c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 641*c506a872SMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 642*c506a872SMatthew G. Knepley 643*c506a872SMatthew G. Knepley Output Parameter: 644*c506a872SMatthew G. Knepley . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 645*c506a872SMatthew G. Knepley 646*c506a872SMatthew G. Knepley Note: 647*c506a872SMatthew G. Knepley The candidate points are only added to the overlap if they are adjacent to a shared point 648*c506a872SMatthew G. Knepley 649*c506a872SMatthew G. Knepley Level: developer 650*c506a872SMatthew G. Knepley 651*c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 652*c506a872SMatthew G. Knepley @*/ 653*c506a872SMatthew G. Knepley PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[], 654*c506a872SMatthew G. Knepley PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 655*c506a872SMatthew G. Knepley { 656*c506a872SMatthew G. Knepley MPI_Comm comm; 657*c506a872SMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 658*c506a872SMatthew G. Knepley PetscSF sfPoint; 659*c506a872SMatthew G. Knepley const PetscSFNode *remote; 660*c506a872SMatthew G. Knepley const PetscInt *local; 661*c506a872SMatthew G. Knepley const PetscInt *nrank, *rrank; 662*c506a872SMatthew G. Knepley PetscInt *adj = NULL; 663*c506a872SMatthew G. Knepley PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l, el; 664*c506a872SMatthew G. Knepley PetscMPIInt rank, size; 665*c506a872SMatthew G. Knepley PetscBool flg; 666*c506a872SMatthew G. Knepley 667*c506a872SMatthew G. Knepley PetscFunctionBegin; 668*c506a872SMatthew G. Knepley *ovLabel = NULL; 669*c506a872SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 670*c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 671*c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 672*c506a872SMatthew G. Knepley if (size == 1) PetscFunctionReturn(0); 673*c506a872SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sfPoint)); 674*c506a872SMatthew G. Knepley PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 675*c506a872SMatthew G. Knepley PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 676*c506a872SMatthew G. Knepley PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 677*c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 678*c506a872SMatthew G. Knepley PetscCall(ISGetIndices(rootrank, &rrank)); 679*c506a872SMatthew G. Knepley PetscCall(ISGetIndices(leafrank, &nrank)); 680*c506a872SMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 681*c506a872SMatthew G. Knepley IS valIS; 682*c506a872SMatthew G. Knepley const PetscInt *points; 683*c506a872SMatthew G. Knepley PetscInt n; 684*c506a872SMatthew G. Knepley 685*c506a872SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS)); 686*c506a872SMatthew G. Knepley if (!valIS) continue; 687*c506a872SMatthew G. Knepley PetscCall(ISGetIndices(valIS, &points)); 688*c506a872SMatthew G. Knepley PetscCall(ISGetLocalSize(valIS, &n)); 689*c506a872SMatthew G. Knepley for (PetscInt i = 0; i < n; ++i) { 690*c506a872SMatthew G. Knepley const PetscInt p = points[i]; 691*c506a872SMatthew G. Knepley 692*c506a872SMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 693*c506a872SMatthew G. Knepley PetscInt loc, adjSize = PETSC_DETERMINE; 694*c506a872SMatthew G. Knepley 695*c506a872SMatthew G. Knepley /* Handle leaves: shared with the root point */ 696*c506a872SMatthew G. Knepley if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc)); 697*c506a872SMatthew G. Knepley else loc = (p >= 0 && p < nleaves) ? p : -1; 698*c506a872SMatthew G. Knepley if (loc >= 0) { 699*c506a872SMatthew G. Knepley const PetscInt remoteRank = remote[loc].rank; 700*c506a872SMatthew G. Knepley 701*c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 702*c506a872SMatthew G. Knepley for (PetscInt a = 0; a < adjSize; ++a) { 703*c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 704*c506a872SMatthew G. Knepley 705*c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 706*c506a872SMatthew G. Knepley PetscInt exVal; 707*c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 708*c506a872SMatthew G. Knepley if (exVal == exValue[el]) {insert = PETSC_FALSE; break;} 709*c506a872SMatthew G. Knepley } 710*c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 711*c506a872SMatthew G. Knepley } 712*c506a872SMatthew G. Knepley } 713*c506a872SMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 714*c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank); 715*c506a872SMatthew G. Knepley } 716*c506a872SMatthew G. Knepley /* Roots are shared with leaves */ 717*c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank); 718*c506a872SMatthew G. Knepley } 719*c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(valIS, &points)); 720*c506a872SMatthew G. Knepley PetscCall(ISDestroy(&valIS)); 721*c506a872SMatthew G. Knepley } 722*c506a872SMatthew G. Knepley PetscCall(PetscFree(adj)); 723*c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(rootrank, &rrank)); 724*c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(leafrank, &nrank)); 725*c506a872SMatthew G. Knepley /* We require the closure in the overlap */ 726*c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 727*c506a872SMatthew G. Knepley PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg)); 728*c506a872SMatthew G. Knepley if (flg) { 729*c506a872SMatthew G. Knepley PetscViewer viewer; 730*c506a872SMatthew G. Knepley PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 731*c506a872SMatthew G. Knepley PetscCall(DMLabelView(ovAdjByRank, viewer)); 732*c506a872SMatthew G. Knepley } 733*c506a872SMatthew G. Knepley /* Invert sender to receiver label */ 734*c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 735*c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 736*c506a872SMatthew G. Knepley /* Add owned points, except for shared local points */ 737*c506a872SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 738*c506a872SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 739*c506a872SMatthew G. Knepley PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 740*c506a872SMatthew G. Knepley PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 741*c506a872SMatthew G. Knepley } 742*c506a872SMatthew G. Knepley /* Clean up */ 743*c506a872SMatthew G. Knepley PetscCall(DMLabelDestroy(&ovAdjByRank)); 744*c506a872SMatthew G. Knepley PetscFunctionReturn(0); 745*c506a872SMatthew G. Knepley } 746*c506a872SMatthew G. Knepley 74724cc2ca5SMatthew G. Knepley /*@C 74824cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 74924cc2ca5SMatthew G. Knepley 750d083f849SBarry Smith Collective on dm 75124cc2ca5SMatthew G. Knepley 75224cc2ca5SMatthew G. Knepley Input Parameters: 75324cc2ca5SMatthew G. Knepley + dm - The DM 75424cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 75524cc2ca5SMatthew G. Knepley 756064ec1f3Sprj- Output Parameter: 757a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 75824cc2ca5SMatthew G. Knepley 75924cc2ca5SMatthew G. Knepley Level: developer 76024cc2ca5SMatthew G. Knepley 761db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()` 76224cc2ca5SMatthew G. Knepley @*/ 76346f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 76446f9b1c3SMichael Lange { 76546f9b1c3SMichael Lange MPI_Comm comm; 7669852e123SBarry Smith PetscMPIInt rank, size; 76746f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 76846f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 76946f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 77046f9b1c3SMichael Lange PetscSFNode *iremote; 77146f9b1c3SMichael Lange PetscSF pointSF; 77246f9b1c3SMichael Lange const PetscInt *sharedLocal; 77346f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 77446f9b1c3SMichael Lange 77546f9b1c3SMichael Lange PetscFunctionBegin; 77646f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 7789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 7799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 7809566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 78146f9b1c3SMichael Lange 78246f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 7839566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote)); 7849566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 78546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 7869566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 78746f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 78846f9b1c3SMichael Lange } 78946f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 7909566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE)); 7919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE)); 79246f9b1c3SMichael Lange 7932d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 7949566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx)); 79546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 79646f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 79746f9b1c3SMichael Lange depthShift[dim] = 0; 79846f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 79946f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 80046f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 80146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 8029566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 80346f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 80446f9b1c3SMichael Lange } 80546f9b1c3SMichael Lange 80646f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 8079566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 80846f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 8099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &ilocal)); 8109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &iremote)); 81146f9b1c3SMichael Lange /* First map local points to themselves */ 81246f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 8139566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 81446f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 81546f9b1c3SMichael Lange point = p + depthShift[d]; 81646f9b1c3SMichael Lange ilocal[point] = point; 81746f9b1c3SMichael Lange iremote[point].index = p; 81846f9b1c3SMichael Lange iremote[point].rank = rank; 81946f9b1c3SMichael Lange depthIdx[d]++; 82046f9b1c3SMichael Lange } 82146f9b1c3SMichael Lange } 82246f9b1c3SMichael Lange 82346f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 8249566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &pointSF)); 8259566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote)); 82646f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 8279566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 82846f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 82946f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 83046f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 83146f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 83246f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 83346f9b1c3SMichael Lange } 83446f9b1c3SMichael Lange } 83546f9b1c3SMichael Lange } 83646f9b1c3SMichael Lange 83746f9b1c3SMichael Lange /* Now add the incoming overlap points */ 83846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 83946f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 84046f9b1c3SMichael Lange ilocal[point] = point; 84146f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 84246f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 84346f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 84446f9b1c3SMichael Lange } 8459566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths,remoteDepths)); 84646f9b1c3SMichael Lange 8479566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 8489566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF")); 8499566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*migrationSF)); 8509566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8519566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 85246f9b1c3SMichael Lange 8539566063dSJacob Faibussowitsch PetscCall(PetscFree3(depthRecv, depthShift, depthIdx)); 85470034214SMatthew G. Knepley PetscFunctionReturn(0); 85570034214SMatthew G. Knepley } 85670034214SMatthew G. Knepley 857a9f1d5b2SMichael Lange /*@ 858f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 859a9f1d5b2SMichael Lange 860064ec1f3Sprj- Input Parameters: 861a9f1d5b2SMichael Lange + dm - The DM 862a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 863a9f1d5b2SMichael Lange 864a9f1d5b2SMichael Lange Output Parameter: 865a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 866a9f1d5b2SMichael Lange 867412e9a14SMatthew G. Knepley Note: 868412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 869412e9a14SMatthew G. Knepley 870a9f1d5b2SMichael Lange Level: developer 871a9f1d5b2SMichael Lange 872db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 873a9f1d5b2SMichael Lange @*/ 874a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 875a9f1d5b2SMichael Lange { 876a9f1d5b2SMichael Lange MPI_Comm comm; 8779852e123SBarry Smith PetscMPIInt rank, size; 878412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 879412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 880412e9a14SMatthew G. Knepley PetscInt *ilocal; 881a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 882412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 883a9f1d5b2SMichael Lange const PetscSFNode *iremote; 884a9f1d5b2SMichael Lange 885a9f1d5b2SMichael Lange PetscFunctionBegin; 886a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 8889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 8899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 8909566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &ldepth)); 8919566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm)); 89363a3b9bcSJacob Faibussowitsch PetscCheck(!(ldepth >= 0) || !(depth != ldepth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth); 8949566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0)); 895a9f1d5b2SMichael Lange 896a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 8979566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote)); 8989566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 8997fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 9009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 901f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 902412e9a14SMatthew G. Knepley DMPolytopeType ct; 903f0e73a3dSToby Isaac 9049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 905412e9a14SMatthew G. Knepley pointDepths[p].index = d; 906412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 907f0e73a3dSToby Isaac } 908412e9a14SMatthew G. Knepley } 909412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;} 9109566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE)); 9119566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE)); 912412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 9139566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx)); 914412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 915412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 916412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 917412e9a14SMatthew G. Knepley } else { 918412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 919412e9a14SMatthew G. Knepley } 920412e9a14SMatthew G. Knepley } 921412e9a14SMatthew G. Knepley { 922412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 923412e9a14SMatthew G. Knepley 9248238f61eSMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) 9258238f61eSMatthew G. Knepley Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells 9268238f61eSMatthew G. Knepley */ 927412e9a14SMatthew G. Knepley depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1; 928412e9a14SMatthew G. Knepley dims[0] = dim; dims[1] = 0; dims[2] = dim-1; dims[3] = 1; 929412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 930412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 931412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 932412e9a14SMatthew G. Knepley 933412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 9348238f61eSMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue; 935412e9a14SMatthew G. Knepley ctShift[c] = shift; 936412e9a14SMatthew G. Knepley shift += ctRecv[c]; 937412e9a14SMatthew G. Knepley } 938412e9a14SMatthew G. Knepley depthShift[dep] = shift; 939412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 940412e9a14SMatthew G. Knepley } 941412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 942412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c); 943412e9a14SMatthew G. Knepley 9448238f61eSMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) { 945412e9a14SMatthew G. Knepley ctShift[c] = shift; 946412e9a14SMatthew G. Knepley shift += ctRecv[c]; 947412e9a14SMatthew G. Knepley } 948412e9a14SMatthew G. Knepley } 949412e9a14SMatthew G. Knepley } 950a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 9519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &ilocal)); 9527fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 953412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 954412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType) remoteDepths[p].rank; 9557fab53ddSMatthew G. Knepley 956412e9a14SMatthew G. Knepley if ((PetscInt) ct < 0) { 9577fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 958412e9a14SMatthew G. Knepley ++depthIdx[dep]; 959412e9a14SMatthew G. Knepley } else { 960412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 961412e9a14SMatthew G. Knepley ++ctIdx[ct]; 962412e9a14SMatthew G. Knepley } 963a9f1d5b2SMichael Lange } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 9659566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Migration SF")); 9669566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode*)iremote, PETSC_COPY_VALUES)); 9679566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths,remoteDepths)); 9689566063dSJacob Faibussowitsch PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx)); 9699566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0)); 970a9f1d5b2SMichael Lange PetscFunctionReturn(0); 971a9f1d5b2SMichael Lange } 972a9f1d5b2SMichael Lange 97370034214SMatthew G. Knepley /*@ 97470034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 97570034214SMatthew G. Knepley 976d083f849SBarry Smith Collective on dm 97770034214SMatthew G. Knepley 97870034214SMatthew G. Knepley Input Parameters: 97970034214SMatthew G. Knepley + dm - The DMPlex object 98070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 98170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 982cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 98370034214SMatthew G. Knepley 98470034214SMatthew G. Knepley Output Parameters: 98570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 986cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 98770034214SMatthew G. Knepley 98870034214SMatthew G. Knepley Level: developer 98970034214SMatthew G. Knepley 990db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()` 99170034214SMatthew G. Knepley @*/ 99270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 99370034214SMatthew G. Knepley { 99470034214SMatthew G. Knepley PetscSF fieldSF; 99570034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 99670034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 99770034214SMatthew G. Knepley 99870034214SMatthew G. Knepley PetscFunctionBegin; 9999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0)); 10009566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 100170034214SMatthew G. Knepley 10029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10039566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE)); 10049566063dSJacob Faibussowitsch PetscCall(VecSetType(newVec,dm->vectype)); 100570034214SMatthew G. Knepley 10069566063dSJacob Faibussowitsch PetscCall(VecGetArray(originalVec, &originalValues)); 10079566063dSJacob Faibussowitsch PetscCall(VecGetArray(newVec, &newValues)); 10089566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10099566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10109566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE)); 10119566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE)); 10129566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newVec, &newValues)); 10149566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(originalVec, &originalValues)); 10159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0)); 101670034214SMatthew G. Knepley PetscFunctionReturn(0); 101770034214SMatthew G. Knepley } 101870034214SMatthew G. Knepley 101970034214SMatthew G. Knepley /*@ 102070034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 102170034214SMatthew G. Knepley 1022d083f849SBarry Smith Collective on dm 102370034214SMatthew G. Knepley 102470034214SMatthew G. Knepley Input Parameters: 102570034214SMatthew G. Knepley + dm - The DMPlex object 102670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 102770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 102870034214SMatthew G. Knepley - originalIS - The existing data 102970034214SMatthew G. Knepley 103070034214SMatthew G. Knepley Output Parameters: 103170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 103270034214SMatthew G. Knepley - newIS - The new data 103370034214SMatthew G. Knepley 103470034214SMatthew G. Knepley Level: developer 103570034214SMatthew G. Knepley 1036db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()` 103770034214SMatthew G. Knepley @*/ 103870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 103970034214SMatthew G. Knepley { 104070034214SMatthew G. Knepley PetscSF fieldSF; 104170034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 104270034214SMatthew G. Knepley const PetscInt *originalValues; 104370034214SMatthew G. Knepley 104470034214SMatthew G. Knepley PetscFunctionBegin; 10459566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0)); 10469566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 104770034214SMatthew G. Knepley 10489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSize, &newValues)); 105070034214SMatthew G. Knepley 10519566063dSJacob Faibussowitsch PetscCall(ISGetIndices(originalIS, &originalValues)); 10529566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10539566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE)); 10559566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE)); 10569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(originalIS, &originalValues)); 10589566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS)); 10599566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0)); 106070034214SMatthew G. Knepley PetscFunctionReturn(0); 106170034214SMatthew G. Knepley } 106270034214SMatthew G. Knepley 106370034214SMatthew G. Knepley /*@ 106470034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 106570034214SMatthew G. Knepley 1066d083f849SBarry Smith Collective on dm 106770034214SMatthew G. Knepley 106870034214SMatthew G. Knepley Input Parameters: 106970034214SMatthew G. Knepley + dm - The DMPlex object 107070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 107170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 107270034214SMatthew G. Knepley . datatype - The type of data 107370034214SMatthew G. Knepley - originalData - The existing data 107470034214SMatthew G. Knepley 107570034214SMatthew G. Knepley Output Parameters: 107670034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 107770034214SMatthew G. Knepley - newData - The new data 107870034214SMatthew G. Knepley 107970034214SMatthew G. Knepley Level: developer 108070034214SMatthew G. Knepley 1081db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()` 108270034214SMatthew G. Knepley @*/ 108370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 108470034214SMatthew G. Knepley { 108570034214SMatthew G. Knepley PetscSF fieldSF; 108670034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 108770034214SMatthew G. Knepley PetscMPIInt dataSize; 108870034214SMatthew G. Knepley 108970034214SMatthew G. Knepley PetscFunctionBegin; 10909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0)); 10919566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 109270034214SMatthew G. Knepley 10939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(datatype, &dataSize)); 10959566063dSJacob Faibussowitsch PetscCall(PetscMalloc(fieldSize * dataSize, newData)); 109670034214SMatthew G. Knepley 10979566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10989566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData,MPI_REPLACE)); 11009566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData,MPI_REPLACE)); 11019566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 11029566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0)); 110370034214SMatthew G. Knepley PetscFunctionReturn(0); 110470034214SMatthew G. Knepley } 110570034214SMatthew G. Knepley 110624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1107cc71bff1SMichael Lange { 1108cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1109cc71bff1SMichael Lange MPI_Comm comm; 1110cc71bff1SMichael Lange PetscSF coneSF; 1111cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 1112ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 1113cc71bff1SMichael Lange PetscBool flg; 1114cc71bff1SMichael Lange 1115cc71bff1SMichael Lange PetscFunctionBegin; 1116cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11170c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 11189566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0)); 1119cc71bff1SMichael Lange /* Distribute cone section */ 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &originalConeSection)); 11229566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection)); 11239566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection)); 11249566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmParallel)); 1125cc71bff1SMichael Lange /* Communicate and renumber cones */ 11269566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF)); 11279566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 11289566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dm, &cones)); 1129ac04eaf7SToby Isaac if (original) { 1130ac04eaf7SToby Isaac PetscInt numCones; 1131ac04eaf7SToby Isaac 11329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(originalConeSection,&numCones)); 11339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numCones,&globCones)); 11349566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones)); 1135367003a6SStefano Zampini } else { 1136ac04eaf7SToby Isaac globCones = cones; 1137ac04eaf7SToby Isaac } 11389566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dmParallel, &newCones)); 11399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE)); 11409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE)); 1141ac04eaf7SToby Isaac if (original) { 11429566063dSJacob Faibussowitsch PetscCall(PetscFree(globCones)); 1143ac04eaf7SToby Isaac } 11449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize)); 11459566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones)); 114676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11473533c52bSMatthew G. Knepley PetscInt p; 11483533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 11493533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 115063a3b9bcSJacob Faibussowitsch if (newCones[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank,p));} 11513533c52bSMatthew G. Knepley } 115228b400f6SJacob Faibussowitsch PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11533533c52bSMatthew G. Knepley } 11549566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg)); 1155cc71bff1SMichael Lange if (flg) { 11569566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Cone Section:\n")); 11579566063dSJacob Faibussowitsch PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm))); 11589566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n")); 11599566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm))); 11609566063dSJacob Faibussowitsch PetscCall(PetscSFView(coneSF, NULL)); 1161cc71bff1SMichael Lange } 11629566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dm, &cones)); 11639566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones)); 11649566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE)); 11659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE)); 11669566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coneSF)); 11679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0)); 1168eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1169cc71bff1SMichael Lange { 1170cc71bff1SMichael Lange PetscInt pStart, pEnd; 1171cc71bff1SMichael Lange 11729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd)); 11739566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd)); 1174cc71bff1SMichael Lange } 11759566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(dmParallel)); 11769566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(dmParallel)); 11771cf84007SMatthew G. Knepley { 11781cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 11791cf84007SMatthew G. Knepley 11809566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 11819566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 11829566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 11839566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 11841cf84007SMatthew G. Knepley } 1185cc71bff1SMichael Lange PetscFunctionReturn(0); 1186cc71bff1SMichael Lange } 1187cc71bff1SMichael Lange 118824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 11890df0e737SMichael Lange { 11900df0e737SMichael Lange MPI_Comm comm; 11919318fe57SMatthew G. Knepley DM cdm, cdmParallel; 11920df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 11930df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 11940df0e737SMichael Lange PetscInt bs; 119590b157c4SStefano Zampini PetscBool isper; 11960df0e737SMichael Lange const char *name; 11970df0e737SMichael Lange const PetscReal *maxCell, *L; 11985dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 11990df0e737SMichael Lange 12000df0e737SMichael Lange PetscFunctionBegin; 12010df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12020c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12030df0e737SMichael Lange 12049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &originalCoordSection)); 12069566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection)); 12079566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates)); 12080df0e737SMichael Lange if (originalCoordinates) { 12099566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 12109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) originalCoordinates, &name)); 12119566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) newCoordinates, name)); 12120df0e737SMichael Lange 12139566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12149566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates)); 12159566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12169566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, bs)); 12179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 12180df0e737SMichael Lange } 12199566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd)); 12209566063dSJacob Faibussowitsch PetscCall(DMSetPeriodicity(dmParallel, isper, maxCell, L, bd)); 12219566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dm, &cdm)); 12229566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel)); 12239566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(cdm, cdmParallel)); 12240df0e737SMichael Lange PetscFunctionReturn(0); 12250df0e737SMichael Lange } 12260df0e737SMichael Lange 122724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 12280df0e737SMichael Lange { 1229df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 12300df0e737SMichael Lange MPI_Comm comm; 12317980c9d4SMatthew G. Knepley DMLabel depthLabel; 12320df0e737SMichael Lange PetscMPIInt rank; 12337980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1234df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1235df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 12360df0e737SMichael Lange 12370df0e737SMichael Lange PetscFunctionBegin; 12380df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12390c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12400c86c063SLisandro Dalcin 12419566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0)); 12429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 12440df0e737SMichael Lange 1245df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 12469566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 12479566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 12489566063dSJacob Faibussowitsch if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject) depthLabel, &depthState)); 1249df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 12501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm)); 1251df0420ecSMatthew G. Knepley if (sendDepth) { 12529566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel)); 12539566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE)); 1254df0420ecSMatthew G. Knepley } 1255d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 12569566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLocalLabels)); 1257d995df53SMatthew G. Knepley numLabels = numLocalLabels; 12589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm)); 1259627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 12605d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1261bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 126283e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1263d67d17b1SMatthew G. Knepley const char *name = NULL; 12640df0e737SMichael Lange 1265d67d17b1SMatthew G. Knepley if (hasLabels) { 12669566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 12670df0e737SMichael Lange /* Skip "depth" because it is recreated */ 12689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) label, &name)); 12699566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 1270d67d17b1SMatthew G. Knepley } 12719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm)); 127283e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 12739566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, migrationSF, &labelNew)); 127483e10cb3SLisandro Dalcin if (isDepth) { 12757980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 12767980c9d4SMatthew G. Knepley PetscInt gdepth; 12777980c9d4SMatthew G. Knepley 12781c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm)); 127963a3b9bcSJacob Faibussowitsch PetscCheck(!(depth >= 0) || !(gdepth != depth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth); 12807980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 12817980c9d4SMatthew G. Knepley PetscBool has; 12827980c9d4SMatthew G. Knepley 12839566063dSJacob Faibussowitsch PetscCall(DMLabelHasStratum(labelNew, d, &has)); 12849566063dSJacob Faibussowitsch if (!has) PetscCall(DMLabelAddStratum(labelNew, d)); 12857980c9d4SMatthew G. Knepley } 12867980c9d4SMatthew G. Knepley } 12879566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmParallel, labelNew)); 128883e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 12899566063dSJacob Faibussowitsch if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput)); 12901c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm)); 12919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) labelNew, &name)); 12929566063dSJacob Faibussowitsch PetscCall(DMSetLabelOutput(dmParallel, name, isOutput)); 12939566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&labelNew)); 12940df0e737SMichael Lange } 12959566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0)); 12960df0e737SMichael Lange PetscFunctionReturn(0); 12970df0e737SMichael Lange } 12980df0e737SMichael Lange 129924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1300a6f36705SMichael Lange { 130115078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 130215078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1303a6f36705SMichael Lange MPI_Comm comm; 1304a6f36705SMichael Lange DM refTree; 1305a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1306a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1307a6f36705SMichael Lange PetscBool flg; 1308a6f36705SMichael Lange 1309a6f36705SMichael Lange PetscFunctionBegin; 1310a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13110c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 13129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1313a6f36705SMichael Lange 1314a6f36705SMichael Lange /* Set up tree */ 13159566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm,&refTree)); 13169566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmParallel,refTree)); 13179566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL)); 1318a6f36705SMichael Lange if (origParentSection) { 1319a6f36705SMichael Lange PetscInt pStart, pEnd; 132008633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1321a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1322a6f36705SMichael Lange PetscSF parentSF; 1323a6f36705SMichael Lange 13249566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 13259566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection)); 13269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newParentSection,pStart,pEnd)); 13279566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection)); 13289566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF)); 13299566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsetsParents)); 13309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newParentSection,&newParentSize)); 13319566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs)); 133208633170SToby Isaac if (original) { 133308633170SToby Isaac PetscInt numParents; 133408633170SToby Isaac 13359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(origParentSection,&numParents)); 13369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numParents,&globParents)); 13379566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents)); 133808633170SToby Isaac } 133908633170SToby Isaac else { 134008633170SToby Isaac globParents = origParents; 134108633170SToby Isaac } 13429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE)); 13439566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE)); 134408633170SToby Isaac if (original) { 13459566063dSJacob Faibussowitsch PetscCall(PetscFree(globParents)); 134608633170SToby Isaac } 13479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE)); 13489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE)); 13499566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents)); 135076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 13514a54e071SToby Isaac PetscInt p; 13524a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 13534a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 135463a3b9bcSJacob Faibussowitsch if (newParents[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p));} 13554a54e071SToby Isaac } 135628b400f6SJacob Faibussowitsch PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 13574a54e071SToby Isaac } 13589566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg)); 1359a6f36705SMichael Lange if (flg) { 13609566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Parent Section: \n")); 13619566063dSJacob Faibussowitsch PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm))); 13629566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n")); 13639566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm))); 13649566063dSJacob Faibussowitsch PetscCall(PetscSFView(parentSF, NULL)); 1365a6f36705SMichael Lange } 13669566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs)); 13679566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newParentSection)); 13689566063dSJacob Faibussowitsch PetscCall(PetscFree2(newParents,newChildIDs)); 13699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&parentSF)); 1370a6f36705SMichael Lange } 137115078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1372a6f36705SMichael Lange PetscFunctionReturn(0); 1373a6f36705SMichael Lange } 13740df0e737SMichael Lange 137524cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 13764eca1733SMichael Lange { 13779852e123SBarry Smith PetscMPIInt rank, size; 13784eca1733SMichael Lange MPI_Comm comm; 13794eca1733SMichael Lange 13804eca1733SMichael Lange PetscFunctionBegin; 13814eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13820c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 13834eca1733SMichael Lange 13844eca1733SMichael Lange /* Create point SF for parallel mesh */ 13859566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0)); 13869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 13879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 13889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 13894eca1733SMichael Lange { 13904eca1733SMichael Lange const PetscInt *leaves; 13914eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 13924eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 13934eca1733SMichael Lange PetscInt pStart, pEnd; 13944eca1733SMichael Lange 13959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 13969566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL)); 13979566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots,&rowners,numLeaves,&lowners)); 13984eca1733SMichael Lange for (p=0; p<numRoots; p++) { 13994eca1733SMichael Lange rowners[p].rank = -1; 14004eca1733SMichael Lange rowners[p].index = -1; 14014eca1733SMichael Lange } 14029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14044eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14054eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 14064eca1733SMichael Lange lowners[p].rank = rank; 14074eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 14084eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 14094eca1733SMichael Lange lowners[p].rank = -2; 14104eca1733SMichael Lange lowners[p].index = -2; 14114eca1733SMichael Lange } 14124eca1733SMichael Lange } 14134eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 14144eca1733SMichael Lange rowners[p].rank = -3; 14154eca1733SMichael Lange rowners[p].index = -3; 14164eca1733SMichael Lange } 14179566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14199566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE)); 14214eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14221dca8a05SBarry Smith PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 14234eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 14244eca1733SMichael Lange } 14259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints)); 14269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &remotePoints)); 14274eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 14284eca1733SMichael Lange if (lowners[p].rank != rank) { 14294eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 14304eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 14314eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 14324eca1733SMichael Lange ++gp; 14334eca1733SMichael Lange } 14344eca1733SMichael Lange } 14359566063dSJacob Faibussowitsch PetscCall(PetscFree2(rowners,lowners)); 14369566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER)); 14379566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions((dmParallel)->sf)); 14384eca1733SMichael Lange } 14391cf84007SMatthew G. Knepley { 14401cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 14411cf84007SMatthew G. Knepley 14429566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 14439566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 14449566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 14459566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 14461cf84007SMatthew G. Knepley } 14479566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0)); 14484eca1733SMichael Lange PetscFunctionReturn(0); 14494eca1733SMichael Lange } 14504eca1733SMichael Lange 145198ba2d7fSLawrence Mitchell /*@ 145298ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 145398ba2d7fSLawrence Mitchell 145498ba2d7fSLawrence Mitchell Input Parameters: 145598ba2d7fSLawrence Mitchell + dm - The DMPlex object 145698ba2d7fSLawrence Mitchell - flg - Balance the partition? 145798ba2d7fSLawrence Mitchell 145898ba2d7fSLawrence Mitchell Level: intermediate 145998ba2d7fSLawrence Mitchell 1460db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()` 146198ba2d7fSLawrence Mitchell @*/ 146298ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 146398ba2d7fSLawrence Mitchell { 146498ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 146598ba2d7fSLawrence Mitchell 146698ba2d7fSLawrence Mitchell PetscFunctionBegin; 146798ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 146898ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 146998ba2d7fSLawrence Mitchell } 147098ba2d7fSLawrence Mitchell 147198ba2d7fSLawrence Mitchell /*@ 147298ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 147398ba2d7fSLawrence Mitchell 147498ba2d7fSLawrence Mitchell Input Parameter: 1475a2b725a8SWilliam Gropp . dm - The DMPlex object 147698ba2d7fSLawrence Mitchell 147798ba2d7fSLawrence Mitchell Output Parameter: 1478a2b725a8SWilliam Gropp . flg - Balance the partition? 147998ba2d7fSLawrence Mitchell 148098ba2d7fSLawrence Mitchell Level: intermediate 148198ba2d7fSLawrence Mitchell 1482db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()` 148398ba2d7fSLawrence Mitchell @*/ 148498ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 148598ba2d7fSLawrence Mitchell { 148698ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 148798ba2d7fSLawrence Mitchell 148898ba2d7fSLawrence Mitchell PetscFunctionBegin; 148998ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1490534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 149198ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 149298ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 149398ba2d7fSLawrence Mitchell } 149498ba2d7fSLawrence Mitchell 1495fc02256fSLawrence Mitchell typedef struct { 1496fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1497fc02256fSLawrence Mitchell } Petsc3Int; 1498fc02256fSLawrence Mitchell 1499fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 15002eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) 1501fc02256fSLawrence Mitchell { 1502fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1503fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1504fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1505fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1506fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1507fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1508fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1509fc02256fSLawrence Mitchell a[i].index = b[i].index; 1510fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1511fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1512fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1513fc02256fSLawrence Mitchell a[i].index = b[i].index; 1514fc02256fSLawrence Mitchell } 1515fc02256fSLawrence Mitchell } 1516fc02256fSLawrence Mitchell } 1517fc02256fSLawrence Mitchell } 1518fc02256fSLawrence Mitchell 1519f5bf2dbfSMichael Lange /*@C 1520a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1521f5bf2dbfSMichael Lange 1522064ec1f3Sprj- Input Parameters: 1523f5bf2dbfSMichael Lange + dm - The source DMPlex object 1524f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 1525d8d19677SJose E. Roman - ownership - Flag causing a vote to determine point ownership 1526f5bf2dbfSMichael Lange 1527f5bf2dbfSMichael Lange Output Parameter: 1528d8d19677SJose E. Roman . pointSF - The star forest describing the point overlap in the remapped DM 1529f5bf2dbfSMichael Lange 15303618482eSVaclav Hapla Notes: 15313618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 15323618482eSVaclav Hapla 1533f5bf2dbfSMichael Lange Level: developer 1534f5bf2dbfSMichael Lange 1535db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 1536f5bf2dbfSMichael Lange @*/ 1537f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1538f5bf2dbfSMichael Lange { 153923193802SMatthew G. Knepley PetscMPIInt rank, size; 15401627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1541f5bf2dbfSMichael Lange PetscInt *pointLocal; 1542f5bf2dbfSMichael Lange const PetscInt *leaves; 1543f5bf2dbfSMichael Lange const PetscSFNode *roots; 1544f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 154523193802SMatthew G. Knepley Vec shifts; 1546cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 154723193802SMatthew G. Knepley const PetscScalar *shift = NULL; 154823193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 154998ba2d7fSLawrence Mitchell PetscBool balance; 1550f5bf2dbfSMichael Lange 1551f5bf2dbfSMichael Lange PetscFunctionBegin; 1552f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 15549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size)); 15559566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0)); 1556f5bf2dbfSMichael Lange 15579566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 15589566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots)); 15599566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes)); 1560f5bf2dbfSMichael Lange if (ownership) { 1561fc02256fSLawrence Mitchell MPI_Op op; 1562fc02256fSLawrence Mitchell MPI_Datatype datatype; 1563fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 156423193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 156598ba2d7fSLawrence Mitchell if (balance) { 156623193802SMatthew G. Knepley PetscRandom r; 156723193802SMatthew G. Knepley 15689566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r)); 15699566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(r, 0, 2467*size)); 15709566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &shifts)); 15719566063dSJacob Faibussowitsch PetscCall(VecSetSizes(shifts, numShifts, numShifts)); 15729566063dSJacob Faibussowitsch PetscCall(VecSetType(shifts, VECSTANDARD)); 15739566063dSJacob Faibussowitsch PetscCall(VecSetRandom(shifts, r)); 15749566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&r)); 15759566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(shifts, &shift)); 157623193802SMatthew G. Knepley } 157723193802SMatthew G. Knepley 15789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &rootVote)); 15799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &leafVote)); 158023193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1581f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 158223193802SMatthew G. Knepley if (shiftDebug) { 158363a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size)); 158423193802SMatthew G. Knepley } 1585f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1586fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 1587fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1588fc02256fSLawrence Mitchell leafVote[p].index = p; 1589f5bf2dbfSMichael Lange } 1590f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 15911627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1592fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1593fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1594fc02256fSLawrence Mitchell rootVote[p].index = -3; 1595f5bf2dbfSMichael Lange } 15969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype)); 15979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&datatype)); 15989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op)); 15999566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op)); 16009566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op)); 16019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&op)); 16029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&datatype)); 1603c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1604fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1605fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1606c091126eSLawrence Mitchell } 16079566063dSJacob Faibussowitsch PetscCall(PetscFree(leafVote)); 16089566063dSJacob Faibussowitsch PetscCall(PetscFree(rootVote)); 1609f5bf2dbfSMichael Lange } else { 1610f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1611f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1612f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1613fc02256fSLawrence Mitchell } 1614f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1615f5bf2dbfSMichael Lange /* Write new local id into old location */ 1616f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 16176462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1618f5bf2dbfSMichael Lange } 1619f5bf2dbfSMichael Lange } 1620f5bf2dbfSMichael Lange } 16219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE)); 16229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE)); 1623f5bf2dbfSMichael Lange 162423193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1625b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 162623193802SMatthew G. Knepley } 16279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointLocal)); 16289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointRemote)); 1629f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1630b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 16313618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1632f5bf2dbfSMichael Lange pointLocal[idx] = p; 1633f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1634f5bf2dbfSMichael Lange idx++; 1635f5bf2dbfSMichael Lange } 1636f5bf2dbfSMichael Lange } 163723193802SMatthew G. Knepley if (shift) { 16389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(shifts, &shift)); 16399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&shifts)); 164023193802SMatthew G. Knepley } 16419566063dSJacob Faibussowitsch if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT)); 16429566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF)); 16439566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*pointSF)); 16449566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER)); 16459566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootNodes, leafNodes)); 16469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0)); 16476c1ef331SVaclav Hapla if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF)); 1648f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1649f5bf2dbfSMichael Lange } 1650f5bf2dbfSMichael Lange 165115078cd4SMichael Lange /*@C 165215078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 165315078cd4SMichael Lange 1654d083f849SBarry Smith Collective on dm 165583655b49SVáclav Hapla 1656064ec1f3Sprj- Input Parameters: 165715078cd4SMichael Lange + dm - The source DMPlex object 1658d8d19677SJose E. Roman - sf - The star forest communication context describing the migration pattern 165915078cd4SMichael Lange 166015078cd4SMichael Lange Output Parameter: 1661d8d19677SJose E. Roman . targetDM - The target DMPlex object 166215078cd4SMichael Lange 1663b9f40539SMichael Lange Level: intermediate 166415078cd4SMichael Lange 1665db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 166615078cd4SMichael Lange @*/ 1667b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 166815078cd4SMichael Lange { 1669b9f40539SMichael Lange MPI_Comm comm; 1670cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1671b9f40539SMichael Lange PetscSF sfPoint; 167215078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1673ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 167415078cd4SMichael Lange 167515078cd4SMichael Lange PetscFunctionBegin; 167615078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0)); 16789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 16799566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16809566063dSJacob Faibussowitsch PetscCall(DMSetDimension(targetDM, dim)); 16819566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 16829566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(targetDM, cdim)); 168315078cd4SMichael Lange 1684bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 16859566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 16869566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 1687bfb0467fSMichael Lange if (nroots >= 0) { 1688b9f40539SMichael Lange IS isOriginal; 1689ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1690ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1691367003a6SStefano Zampini 1692b9f40539SMichael Lange /* Get the original point numbering */ 16939566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal)); 16949566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal)); 16959566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size)); 16969566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig)); 1697b9f40539SMichael Lange /* Convert to positive global numbers */ 1698b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1699b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 17009566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL)); 17019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &numbering_new)); 17029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE)); 17039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE)); 17049566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration)); 17059566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig)); 17069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isOriginal)); 170715078cd4SMichael Lange } else { 1708bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 17099566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration)); 171015078cd4SMichael Lange } 1711a5a902f7SVaclav Hapla PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration")); 1712a5a902f7SVaclav Hapla PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view")); 171315078cd4SMichael Lange /* Migrate DM data to target DM */ 17149566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17159566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeLabels(dm, sf, targetDM)); 17169566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM)); 17179566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17189566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogOriginal)); 17199566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogMigration)); 17209566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0)); 172115078cd4SMichael Lange PetscFunctionReturn(0); 172215078cd4SMichael Lange } 172315078cd4SMichael Lange 17243b8f15a2SMatthew G. Knepley /*@C 172570034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 172670034214SMatthew G. Knepley 1727d083f849SBarry Smith Collective on dm 172870034214SMatthew G. Knepley 1729064ec1f3Sprj- Input Parameters: 173070034214SMatthew G. Knepley + dm - The original DMPlex object 173170034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 173270034214SMatthew G. Knepley 1733064ec1f3Sprj- Output Parameters: 1734f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1735f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 173670034214SMatthew G. Knepley 1737f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 173870034214SMatthew G. Knepley 1739b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 174070034214SMatthew G. Knepley representation on the mesh. 174170034214SMatthew G. Knepley 174270034214SMatthew G. Knepley Level: intermediate 174370034214SMatthew G. Knepley 1744db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()` 174570034214SMatthew G. Knepley @*/ 174680cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 174770034214SMatthew G. Knepley { 174870034214SMatthew G. Knepley MPI_Comm comm; 174915078cd4SMichael Lange PetscPartitioner partitioner; 1750f8987ae8SMichael Lange IS cellPart; 1751f8987ae8SMichael Lange PetscSection cellPartSection; 1752cf86098cSMatthew G. Knepley DM dmCoord; 1753f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1754874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 175598ba2d7fSLawrence Mitchell PetscBool flg, balance; 1756874ddda9SLisandro Dalcin PetscMPIInt rank, size; 175770034214SMatthew G. Knepley 175870034214SMatthew G. Knepley PetscFunctionBegin; 175970034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1760d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1761d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1762d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 176370034214SMatthew G. Knepley 17640c86c063SLisandro Dalcin if (sf) *sf = NULL; 17650c86c063SLisandro Dalcin *dmParallel = NULL; 17669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 17679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 17689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17690c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 177070034214SMatthew G. Knepley 17719566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0)); 177215078cd4SMichael Lange /* Create cell partition */ 17739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0)); 17749566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &cellPartSection)); 17759566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &partitioner)); 17769566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart)); 17779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0)); 1778f8987ae8SMichael Lange { 1779f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1780825f8a23SLisandro Dalcin IS is; 1781825f8a23SLisandro Dalcin PetscHSetI ht; 1782f8987ae8SMichael Lange const PetscInt *points; 17838e330a33SStefano Zampini PetscInt *iranks; 17848e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1785825f8a23SLisandro Dalcin 17869566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition)); 1787825f8a23SLisandro Dalcin /* Preallocate strata */ 17889566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 17899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1790825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 17919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 17929566063dSJacob Faibussowitsch if (npoints) PetscCall(PetscHSetIAdd(ht, proc)); 1793825f8a23SLisandro Dalcin } 17949566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(ht, &nranks)); 17959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nranks, &iranks)); 17969566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetElems(ht, &poff, iranks)); 17979566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 17989566063dSJacob Faibussowitsch PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks)); 17999566063dSJacob Faibussowitsch PetscCall(PetscFree(iranks)); 1800825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 18019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(cellPart, &points)); 18029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1803f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 18049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 1805825f8a23SLisandro Dalcin if (!npoints) continue; 18069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff)); 18079566063dSJacob Faibussowitsch PetscCall(DMPlexClosurePoints_Private(dm, npoints, points+poff, &is)); 18089566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(lblPartition, proc, is)); 18099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 1810f8987ae8SMichael Lange } 18119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(cellPart, &points)); 1812f8987ae8SMichael Lange } 18139566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0)); 18146e203dd9SStefano Zampini 18159566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration)); 18169566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration)); 18179566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration)); 18189566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified)); 18199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 182043f7d02bSMichael Lange sfMigration = sfStratified; 18219566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sfMigration)); 18229566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0)); 18239566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg)); 182470034214SMatthew G. Knepley if (flg) { 18259566063dSJacob Faibussowitsch PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm))); 18269566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm))); 182770034214SMatthew G. Knepley } 1828f8987ae8SMichael Lange 182915078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 18309566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmParallel)); 18319566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh")); 18329566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel)); 183370034214SMatthew G. Knepley 1834a157612eSMichael Lange /* Build the point SF without overlap */ 18359566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 18369566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance)); 18379566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint)); 18389566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmParallel, sfPoint)); 18399566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord)); 18409566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 18419566063dSJacob Faibussowitsch if (flg) PetscCall(PetscSFView(sfPoint, NULL)); 184270034214SMatthew G. Knepley 1843a157612eSMichael Lange if (overlap > 0) { 184415078cd4SMichael Lange DM dmOverlap; 184557f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 184657f290daSMatthew G. Knepley const PetscInt *oldLeaves; 184757f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 184815078cd4SMichael Lange const PetscSFNode *oldRemote; 184915078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1850524e35f8SStefano Zampini 1851a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 18529566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap)); 18539566063dSJacob Faibussowitsch PetscCall(DMDestroy(dmParallel)); 1854a157612eSMichael Lange *dmParallel = dmOverlap; 1855c389ea9fSToby Isaac if (flg) { 18569566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n")); 18579566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfOverlap, NULL)); 1858c389ea9fSToby Isaac } 185943331d4aSMichael Lange 1860f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 18619566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote)); 18629566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL)); 18639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &newRemote)); 186457f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 186557f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 186657f290daSMatthew G. Knepley if (oldLeaves) { 186773e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 18689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(noldleaves, &permRemote)); 186957f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 187057f290daSMatthew G. Knepley oldRemote = permRemote; 187157f290daSMatthew G. Knepley } 18729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE)); 18739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE)); 18749566063dSJacob Faibussowitsch if (oldLeaves) PetscCall(PetscFree(oldRemote)); 18759566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sfOverlapPoint)); 18769566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER)); 18779566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 18789566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 187915078cd4SMichael Lange sfMigration = sfOverlapPoint; 1880c389ea9fSToby Isaac } 1881bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 18829566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblPartition)); 18839566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblMigration)); 18849566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&cellPartSection)); 18859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellPart)); 188645480ffeSMatthew G. Knepley /* Copy discretization */ 18879566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *dmParallel)); 188866fe0bfeSMatthew G. Knepley /* Create sfNatural */ 188966fe0bfeSMatthew G. Knepley if (dm->useNatural) { 189066fe0bfeSMatthew G. Knepley PetscSection section; 189166fe0bfeSMatthew G. Knepley 18929566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 18939566063dSJacob Faibussowitsch PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural)); 18949566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE)); 189566fe0bfeSMatthew G. Knepley } 18965de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel)); 1897721cbd76SMatthew G. Knepley /* Cleanup */ 1898f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 18999566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfMigration)); 19009566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 19019566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0)); 190270034214SMatthew G. Knepley PetscFunctionReturn(0); 190370034214SMatthew G. Knepley } 1904a157612eSMichael Lange 1905a157612eSMichael Lange /*@C 190624cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1907a157612eSMichael Lange 1908d083f849SBarry Smith Collective on dm 1909a157612eSMichael Lange 1910064ec1f3Sprj- Input Parameters: 1911064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 191257fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1913a157612eSMichael Lange 1914064ec1f3Sprj- Output Parameters: 1915a157612eSMichael Lange + sf - The PetscSF used for point distribution 1916a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1917a157612eSMichael Lange 1918dccdeccaSVaclav Hapla Notes: 1919dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1920a157612eSMichael Lange 1921b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1922a157612eSMichael Lange representation on the mesh. 1923a157612eSMichael Lange 1924*c506a872SMatthew G. Knepley Options Database Keys: 1925*c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names 1926*c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...> - List of overlap label values 1927*c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name> - Label used to exclude points from overlap 1928*c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int> - Label value used to exclude points from overlap 1929*c506a872SMatthew G. Knepley 1930dccdeccaSVaclav Hapla Level: advanced 1931a157612eSMichael Lange 1932db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()` 1933a157612eSMichael Lange @*/ 1934b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1935a157612eSMichael Lange { 1936*c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1937a157612eSMichael Lange MPI_Comm comm; 19383567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1939a157612eSMichael Lange PetscSection rootSection, leafSection; 1940a157612eSMichael Lange IS rootrank, leafrank; 1941cf86098cSMatthew G. Knepley DM dmCoord; 1942a9f1d5b2SMichael Lange DMLabel lblOverlap; 1943f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1944a157612eSMichael Lange 1945a157612eSMichael Lange PetscFunctionBegin; 1946a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 194757fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1948a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1949a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1950a157612eSMichael Lange 19510c86c063SLisandro Dalcin if (sf) *sf = NULL; 19520c86c063SLisandro Dalcin *dmOverlap = NULL; 19539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 19549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 19559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19560c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1957*c506a872SMatthew G. Knepley { 1958*c506a872SMatthew G. Knepley // We need to get options for the _already_distributed mesh, so it must be done here 1959*c506a872SMatthew G. Knepley PetscInt overlap; 1960*c506a872SMatthew G. Knepley const char *prefix; 1961*c506a872SMatthew G. Knepley char oldPrefix[PETSC_MAX_PATH_LEN]; 1962a157612eSMichael Lange 1963*c506a872SMatthew G. Knepley oldPrefix[0] = '\0'; 1964*c506a872SMatthew G. Knepley PetscCall(PetscObjectGetOptionsPrefix((PetscObject) dm, &prefix)); 1965*c506a872SMatthew G. Knepley PetscCall(PetscStrcpy(oldPrefix, prefix)); 1966*c506a872SMatthew G. Knepley PetscCall(PetscObjectAppendOptionsPrefix((PetscObject) dm, "dist_")); 1967*c506a872SMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 1968*c506a872SMatthew G. Knepley PetscObjectOptionsBegin((PetscObject) dm); 1969*c506a872SMatthew G. Knepley PetscCall(DMSetFromOptions_Overlap_Plex(PetscOptionsObject, dm, &overlap)); 1970*c506a872SMatthew G. Knepley PetscOptionsEnd(); 1971*c506a872SMatthew G. Knepley PetscCall(PetscObjectSetOptionsPrefix((PetscObject) dm, oldPrefix[0] == '\0' ? NULL : oldPrefix)); 1972*c506a872SMatthew G. Knepley } 19739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 1974a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 19759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0)); 19769566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &rootSection)); 19779566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &leafSection)); 19789566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank)); 1979*c506a872SMatthew G. Knepley if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 1980*c506a872SMatthew G. Knepley else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 1981a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 19829566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap)); 19839566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified)); 19849566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 1985a9f1d5b2SMichael Lange sfOverlap = sfStratified; 19869566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF")); 19879566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sfOverlap)); 1988a9f1d5b2SMichael Lange 19899566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 19909566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 19919566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rootrank)); 19929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&leafrank)); 19939566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0)); 1994a157612eSMichael Lange 1995a157612eSMichael Lange /* Build the overlapping DM */ 19969566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmOverlap)); 19979566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh")); 19989566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap)); 1999cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 200060667520SVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap)); 2001f5bf2dbfSMichael Lange /* Build the new point SF */ 20029566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint)); 20039566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmOverlap, sfPoint)); 20049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord)); 20059566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 20069566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2007a157612eSMichael Lange /* Cleanup overlap partition */ 20089566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblOverlap)); 2009a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 20109566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfOverlap)); 20119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 2012a157612eSMichael Lange PetscFunctionReturn(0); 2013a157612eSMichael Lange } 20146462276dSToby Isaac 2015cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) 2016cb54e036SVaclav Hapla { 2017cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex*) dm->data; 2018cb54e036SVaclav Hapla 2019cb54e036SVaclav Hapla PetscFunctionBegin; 2020cb54e036SVaclav Hapla *overlap = mesh->overlap; 2021cb54e036SVaclav Hapla PetscFunctionReturn(0); 2022cb54e036SVaclav Hapla } 2023cb54e036SVaclav Hapla 202460667520SVaclav Hapla PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap) 202560667520SVaclav Hapla { 202660667520SVaclav Hapla DM_Plex *mesh=NULL; 202760667520SVaclav Hapla DM_Plex *meshSrc=NULL; 202860667520SVaclav Hapla 202960667520SVaclav Hapla PetscFunctionBegin; 203060667520SVaclav Hapla PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 203160667520SVaclav Hapla mesh = (DM_Plex*) dm->data; 203260667520SVaclav Hapla mesh->overlap = overlap; 203360667520SVaclav Hapla if (dmSrc) { 203460667520SVaclav Hapla PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX); 203560667520SVaclav Hapla meshSrc = (DM_Plex*) dmSrc->data; 203660667520SVaclav Hapla mesh->overlap += meshSrc->overlap; 203760667520SVaclav Hapla } 203860667520SVaclav Hapla PetscFunctionReturn(0); 203960667520SVaclav Hapla } 204060667520SVaclav Hapla 2041cb54e036SVaclav Hapla /*@ 2042*c506a872SMatthew G. Knepley DMPlexGetOverlap - Get the width of the cell overlap 2043cb54e036SVaclav Hapla 2044cb54e036SVaclav Hapla Not collective 2045cb54e036SVaclav Hapla 2046cb54e036SVaclav Hapla Input Parameter: 2047cb54e036SVaclav Hapla . dm - The DM 2048cb54e036SVaclav Hapla 2049064ec1f3Sprj- Output Parameter: 2050*c506a872SMatthew G. Knepley . overlap - the width of the cell overlap 2051cb54e036SVaclav Hapla 2052cb54e036SVaclav Hapla Level: intermediate 2053cb54e036SVaclav Hapla 2054*c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()` 2055cb54e036SVaclav Hapla @*/ 2056cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) 2057cb54e036SVaclav Hapla { 2058cb54e036SVaclav Hapla PetscFunctionBegin; 2059cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2060*c506a872SMatthew G. Knepley PetscValidIntPointer(overlap, 2); 2061cac4c232SBarry Smith PetscUseMethod(dm, "DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap)); 2062cb54e036SVaclav Hapla PetscFunctionReturn(0); 2063cb54e036SVaclav Hapla } 2064cb54e036SVaclav Hapla 2065*c506a872SMatthew G. Knepley /*@ 2066*c506a872SMatthew G. Knepley DMPlexSetOverlap - Set the width of the cell overlap 2067*c506a872SMatthew G. Knepley 2068*c506a872SMatthew G. Knepley Logically collective 2069*c506a872SMatthew G. Knepley 2070*c506a872SMatthew G. Knepley Input Parameters: 2071*c506a872SMatthew G. Knepley + dm - The DM 2072*c506a872SMatthew G. Knepley . dmSrc - The DM that produced this one, or NULL 2073*c506a872SMatthew G. Knepley - overlap - the width of the cell overlap 2074*c506a872SMatthew G. Knepley 2075*c506a872SMatthew G. Knepley Note: 2076*c506a872SMatthew G. Knepley The overlap from dmSrc is added to dm 2077*c506a872SMatthew G. Knepley 2078*c506a872SMatthew G. Knepley Level: intermediate 2079*c506a872SMatthew G. Knepley 2080*c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()` 2081*c506a872SMatthew G. Knepley @*/ 2082*c506a872SMatthew G. Knepley PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap) 2083*c506a872SMatthew G. Knepley { 2084*c506a872SMatthew G. Knepley PetscFunctionBegin; 2085*c506a872SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2086*c506a872SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 3); 2087*c506a872SMatthew G. Knepley PetscTryMethod(dm, "DMPlexSetOverlap_C",(DM,DM,PetscInt),(dm,dmSrc,overlap)); 2088*c506a872SMatthew G. Knepley PetscFunctionReturn(0); 2089*c506a872SMatthew G. Knepley } 2090*c506a872SMatthew G. Knepley 2091e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist) 2092e600fa54SMatthew G. Knepley { 2093e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 2094e600fa54SMatthew G. Knepley 2095e600fa54SMatthew G. Knepley PetscFunctionBegin; 2096e600fa54SMatthew G. Knepley mesh->distDefault = dist; 2097e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2098e600fa54SMatthew G. Knepley } 2099e600fa54SMatthew G. Knepley 2100e600fa54SMatthew G. Knepley /*@ 2101e600fa54SMatthew G. Knepley DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default 2102e600fa54SMatthew G. Knepley 2103e600fa54SMatthew G. Knepley Logically collective 2104e600fa54SMatthew G. Knepley 2105e600fa54SMatthew G. Knepley Input Parameters: 2106e600fa54SMatthew G. Knepley + dm - The DM 2107e600fa54SMatthew G. Knepley - dist - Flag for distribution 2108e600fa54SMatthew G. Knepley 2109e600fa54SMatthew G. Knepley Level: intermediate 2110e600fa54SMatthew G. Knepley 21119e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()` 2112e600fa54SMatthew G. Knepley @*/ 2113e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist) 2114e600fa54SMatthew G. Knepley { 2115e600fa54SMatthew G. Knepley PetscFunctionBegin; 2116e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2117e600fa54SMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, dist, 2); 2118cac4c232SBarry Smith PetscTryMethod(dm,"DMPlexDistributeSetDefault_C",(DM,PetscBool),(dm,dist)); 2119e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2120e600fa54SMatthew G. Knepley } 2121e600fa54SMatthew G. Knepley 2122e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist) 2123e600fa54SMatthew G. Knepley { 2124e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 2125e600fa54SMatthew G. Knepley 2126e600fa54SMatthew G. Knepley PetscFunctionBegin; 2127e600fa54SMatthew G. Knepley *dist = mesh->distDefault; 2128e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2129e600fa54SMatthew G. Knepley } 2130e600fa54SMatthew G. Knepley 2131e600fa54SMatthew G. Knepley /*@ 2132e600fa54SMatthew G. Knepley DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default 2133e600fa54SMatthew G. Knepley 2134e600fa54SMatthew G. Knepley Not collective 2135e600fa54SMatthew G. Knepley 2136e600fa54SMatthew G. Knepley Input Parameter: 2137e600fa54SMatthew G. Knepley . dm - The DM 2138e600fa54SMatthew G. Knepley 2139e600fa54SMatthew G. Knepley Output Parameter: 2140e600fa54SMatthew G. Knepley . dist - Flag for distribution 2141e600fa54SMatthew G. Knepley 2142e600fa54SMatthew G. Knepley Level: intermediate 2143e600fa54SMatthew G. Knepley 21449e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()` 2145e600fa54SMatthew G. Knepley @*/ 2146e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist) 2147e600fa54SMatthew G. Knepley { 2148e600fa54SMatthew G. Knepley PetscFunctionBegin; 2149e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2150e600fa54SMatthew G. Knepley PetscValidBoolPointer(dist, 2); 2151cac4c232SBarry Smith PetscUseMethod(dm,"DMPlexDistributeGetDefault_C",(DM,PetscBool*),(dm,dist)); 2152e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2153e600fa54SMatthew G. Knepley } 2154e600fa54SMatthew G. Knepley 21556462276dSToby Isaac /*@C 21566462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 21576462276dSToby Isaac root process of the original's communicator. 21586462276dSToby Isaac 2159d083f849SBarry Smith Collective on dm 216083655b49SVáclav Hapla 2161064ec1f3Sprj- Input Parameter: 21626462276dSToby Isaac . dm - the original DMPlex object 21636462276dSToby Isaac 21646462276dSToby Isaac Output Parameters: 2165a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2166a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 21676462276dSToby Isaac 21686462276dSToby Isaac Level: intermediate 21696462276dSToby Isaac 2170db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()` 21716462276dSToby Isaac @*/ 2172a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 21736462276dSToby Isaac { 21746462276dSToby Isaac MPI_Comm comm; 21756462276dSToby Isaac PetscMPIInt size; 21766462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 21776462276dSToby Isaac 21786462276dSToby Isaac PetscFunctionBegin; 21796462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2180064a246eSJacob Faibussowitsch PetscValidPointer(gatherMesh,3); 21810c86c063SLisandro Dalcin *gatherMesh = NULL; 2182a13df41bSStefano Zampini if (sf) *sf = NULL; 21836462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 21849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 21856462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 21869566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm,&oldPart)); 21879566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldPart)); 21889566063dSJacob Faibussowitsch PetscCall(PetscPartitionerCreate(comm,&gatherPart)); 21899566063dSJacob Faibussowitsch PetscCall(PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER)); 21909566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm,gatherPart)); 21919566063dSJacob Faibussowitsch PetscCall(DMPlexDistribute(dm,0,sf,gatherMesh)); 2192a13df41bSStefano Zampini 21939566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm,oldPart)); 21949566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&gatherPart)); 21959566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&oldPart)); 21966462276dSToby Isaac PetscFunctionReturn(0); 21976462276dSToby Isaac } 21986462276dSToby Isaac 21996462276dSToby Isaac /*@C 22006462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 22016462276dSToby Isaac 2202d083f849SBarry Smith Collective on dm 220383655b49SVáclav Hapla 2204064ec1f3Sprj- Input Parameter: 22056462276dSToby Isaac . dm - the original DMPlex object 22066462276dSToby Isaac 22076462276dSToby Isaac Output Parameters: 2208a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2209a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 22106462276dSToby Isaac 22116462276dSToby Isaac Level: intermediate 22126462276dSToby Isaac 2213db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()` 22146462276dSToby Isaac @*/ 2215a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 22166462276dSToby Isaac { 22176462276dSToby Isaac MPI_Comm comm; 22186462276dSToby Isaac PetscMPIInt size, rank; 22196462276dSToby Isaac PetscInt pStart, pEnd, p; 22206462276dSToby Isaac PetscInt numPoints = -1; 2221a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 22226462276dSToby Isaac DM gatherDM, dmCoord; 22236462276dSToby Isaac PetscSFNode *points; 22246462276dSToby Isaac 22256462276dSToby Isaac PetscFunctionBegin; 22266462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2227064a246eSJacob Faibussowitsch PetscValidPointer(redundantMesh,3); 22280c86c063SLisandro Dalcin *redundantMesh = NULL; 22296462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 22309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 223168dbc166SMatthew G. Knepley if (size == 1) { 22329566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dm)); 223368dbc166SMatthew G. Knepley *redundantMesh = dm; 2234a13df41bSStefano Zampini if (sf) *sf = NULL; 223568dbc166SMatthew G. Knepley PetscFunctionReturn(0); 223668dbc166SMatthew G. Knepley } 22379566063dSJacob Faibussowitsch PetscCall(DMPlexGetGatherDM(dm,&gatherSF,&gatherDM)); 22386462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 22399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 22409566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(gatherDM,&pStart,&pEnd)); 22416462276dSToby Isaac numPoints = pEnd - pStart; 22429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numPoints,1,MPIU_INT,0,comm)); 22439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints,&points)); 22449566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm,&migrationSF)); 22456462276dSToby Isaac for (p = 0; p < numPoints; p++) { 22466462276dSToby Isaac points[p].index = p; 22476462276dSToby Isaac points[p].rank = 0; 22486462276dSToby Isaac } 22499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER)); 22509566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, redundantMesh)); 22519566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh")); 22529566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh)); 22532e28cf0cSVaclav Hapla /* This is to express that all point are in overlap */ 22542e28cf0cSVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT)); 22559566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint)); 22569566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*redundantMesh, sfPoint)); 22579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord)); 22589566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 22599566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2260a13df41bSStefano Zampini if (sf) { 2261a13df41bSStefano Zampini PetscSF tsf; 2262a13df41bSStefano Zampini 22639566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(gatherSF,migrationSF,&tsf)); 22649566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf)); 22659566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tsf)); 2266a13df41bSStefano Zampini } 22679566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&migrationSF)); 22689566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&gatherSF)); 22699566063dSJacob Faibussowitsch PetscCall(DMDestroy(&gatherDM)); 22709566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *redundantMesh)); 22715de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh)); 22726462276dSToby Isaac PetscFunctionReturn(0); 22736462276dSToby Isaac } 22745fa78c88SVaclav Hapla 22755fa78c88SVaclav Hapla /*@ 22765fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 22775fa78c88SVaclav Hapla 22785fa78c88SVaclav Hapla Collective 22795fa78c88SVaclav Hapla 22805fa78c88SVaclav Hapla Input Parameter: 22815fa78c88SVaclav Hapla . dm - The DM object 22825fa78c88SVaclav Hapla 22835fa78c88SVaclav Hapla Output Parameter: 22845fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 22855fa78c88SVaclav Hapla 22865fa78c88SVaclav Hapla Level: intermediate 22875fa78c88SVaclav Hapla 22885fa78c88SVaclav Hapla Notes: 22895fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 22905fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 22915fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 22925fa78c88SVaclav Hapla 2293db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()` 22945fa78c88SVaclav Hapla @*/ 22955fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) 22965fa78c88SVaclav Hapla { 22975fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 22985fa78c88SVaclav Hapla MPI_Comm comm; 229935d70e31SStefano Zampini PetscMPIInt size; 23005fa78c88SVaclav Hapla 23015fa78c88SVaclav Hapla PetscFunctionBegin; 23025fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2303dadcf809SJacob Faibussowitsch PetscValidBoolPointer(distributed,2); 23049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 23059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 230635d70e31SStefano Zampini if (size == 1) { *distributed = PETSC_FALSE; PetscFunctionReturn(0); } 23079566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 230835d70e31SStefano Zampini count = (pEnd - pStart) > 0 ? 1 : 0; 23099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm)); 23105fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 23115fa78c88SVaclav Hapla PetscFunctionReturn(0); 23125fa78c88SVaclav Hapla } 2313