xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision c506a87246cc2cc9ba1c50c3c927b0fcf0a503b2)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()`
203c1f0c11SLawrence Mitchell @*/
213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx)
223c1f0c11SLawrence Mitchell {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
396b867d5aSJose E. Roman + user    - The user callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()`
453c1f0c11SLawrence Mitchell @*/
463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx)
473c1f0c11SLawrence Mitchell {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
678b0b4c70SToby Isaac @*/
685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
698b0b4c70SToby Isaac {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
758b0b4c70SToby Isaac   PetscFunctionReturn(0);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
908b0b4c70SToby Isaac @*/
915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
928b0b4c70SToby Isaac {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
97064a246eSJacob Faibussowitsch   PetscValidBoolPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
998b0b4c70SToby Isaac   PetscFunctionReturn(0);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
10370034214SMatthew G. Knepley {
10470034214SMatthew G. Knepley   const PetscInt *cone = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley 
10770034214SMatthew G. Knepley   PetscFunctionBeginHot;
1089566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, p, &coneSize));
1099566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCone(dm, p, &cone));
1104b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1114b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
11270034214SMatthew G. Knepley     const PetscInt *support = NULL;
11370034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11470034214SMatthew G. Knepley 
1159566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
1169566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, point, &support));
11770034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
118527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) {
11970034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12070034214SMatthew G. Knepley       }
12163a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
12270034214SMatthew G. Knepley     }
12370034214SMatthew G. Knepley   }
12470034214SMatthew G. Knepley   *adjSize = numAdj;
12570034214SMatthew G. Knepley   PetscFunctionReturn(0);
12670034214SMatthew G. Knepley }
12770034214SMatthew G. Knepley 
12870034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
12970034214SMatthew G. Knepley {
13070034214SMatthew G. Knepley   const PetscInt *support = NULL;
13170034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
13270034214SMatthew G. Knepley 
13370034214SMatthew G. Knepley   PetscFunctionBeginHot;
1349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupportSize(dm, p, &supportSize));
1359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupport(dm, p, &support));
1364b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1374b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
13870034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
13970034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14070034214SMatthew G. Knepley 
1419566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
1429566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, point, &cone));
14370034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
144527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) {
14570034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14670034214SMatthew G. Knepley       }
14763a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
14870034214SMatthew G. Knepley     }
14970034214SMatthew G. Knepley   }
15070034214SMatthew G. Knepley   *adjSize = numAdj;
15170034214SMatthew G. Knepley   PetscFunctionReturn(0);
15270034214SMatthew G. Knepley }
15370034214SMatthew G. Knepley 
15470034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
15570034214SMatthew G. Knepley {
15670034214SMatthew G. Knepley   PetscInt      *star = NULL;
15770034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
15870034214SMatthew G. Knepley 
15970034214SMatthew G. Knepley   PetscFunctionBeginHot;
1609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star));
16170034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
16270034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16370034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16470034214SMatthew G. Knepley 
1659566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure));
16670034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
167527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) {
16870034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
16970034214SMatthew G. Knepley       }
17063a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
17170034214SMatthew G. Knepley     }
1729566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure));
17370034214SMatthew G. Knepley   }
1749566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star));
17570034214SMatthew G. Knepley   *adjSize = numAdj;
17670034214SMatthew G. Knepley   PetscFunctionReturn(0);
17770034214SMatthew G. Knepley }
17870034214SMatthew G. Knepley 
1795b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
18070034214SMatthew G. Knepley {
18179bad331SMatthew G. Knepley   static PetscInt asiz = 0;
1828b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
1838b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
1848b0b4c70SToby Isaac   PetscInt maxAdjSize;
1858b0b4c70SToby Isaac   PetscSection aSec = NULL;
1868b0b4c70SToby Isaac   IS aIS = NULL;
1878b0b4c70SToby Isaac   const PetscInt *anchors;
1883c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
18970034214SMatthew G. Knepley 
19070034214SMatthew G. Knepley   PetscFunctionBeginHot;
1915b317d89SToby Isaac   if (useAnchors) {
1929566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAnchors(dm,&aSec,&aIS));
1938b0b4c70SToby Isaac     if (aSec) {
1949566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetMaxDof(aSec,&maxAnchors));
19524c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
1969566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(aSec,&aStart,&aEnd));
1979566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(aIS,&anchors));
1988b0b4c70SToby Isaac     }
1998b0b4c70SToby Isaac   }
20079bad331SMatthew G. Knepley   if (!*adj) {
20124c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20279bad331SMatthew G. Knepley 
2039566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart,&pEnd));
2049566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(dm, &depth));
205412e9a14SMatthew G. Knepley     depth = PetscMax(depth, -depth);
2069566063dSJacob Faibussowitsch     PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS));
20724c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
20824c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
20924c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2108b0b4c70SToby Isaac     asiz *= maxAnchors;
21124c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
2129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(asiz,adj));
21379bad331SMatthew G. Knepley   }
21479bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2158b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2163c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
2179566063dSJacob Faibussowitsch     PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx));
2183c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
2199566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj));
22070034214SMatthew G. Knepley   } else if (useCone) {
2219566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj));
22270034214SMatthew G. Knepley   } else {
2239566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj));
22470034214SMatthew G. Knepley   }
2255b317d89SToby Isaac   if (useAnchors && aSec) {
2268b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
2278b0b4c70SToby Isaac     PetscInt numAdj = origSize;
2288b0b4c70SToby Isaac     PetscInt i = 0, j;
2298b0b4c70SToby Isaac     PetscInt *orig = *adj;
2308b0b4c70SToby Isaac 
2318b0b4c70SToby Isaac     while (i < origSize) {
2328b0b4c70SToby Isaac       PetscInt p = orig[i];
2338b0b4c70SToby Isaac       PetscInt aDof = 0;
2348b0b4c70SToby Isaac 
2358b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
2369566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(aSec,p,&aDof));
2378b0b4c70SToby Isaac       }
2388b0b4c70SToby Isaac       if (aDof) {
2398b0b4c70SToby Isaac         PetscInt aOff;
2408b0b4c70SToby Isaac         PetscInt s, q;
2418b0b4c70SToby Isaac 
2428b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
2438b0b4c70SToby Isaac           orig[j - 1] = orig[j];
2448b0b4c70SToby Isaac         }
2458b0b4c70SToby Isaac         origSize--;
2468b0b4c70SToby Isaac         numAdj--;
2479566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(aSec,p,&aOff));
2488b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
249527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) {
2508b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
2518b0b4c70SToby Isaac           }
25263a3b9bcSJacob Faibussowitsch           PetscCheck(numAdj <= maxAdjSize,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
2538b0b4c70SToby Isaac         }
2548b0b4c70SToby Isaac       }
2558b0b4c70SToby Isaac       else {
2568b0b4c70SToby Isaac         i++;
2578b0b4c70SToby Isaac       }
2588b0b4c70SToby Isaac     }
2598b0b4c70SToby Isaac     *adjSize = numAdj;
2609566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(aIS,&anchors));
2618b0b4c70SToby Isaac   }
26270034214SMatthew G. Knepley   PetscFunctionReturn(0);
26370034214SMatthew G. Knepley }
26470034214SMatthew G. Knepley 
26570034214SMatthew G. Knepley /*@
26670034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
26770034214SMatthew G. Knepley 
26870034214SMatthew G. Knepley   Input Parameters:
26970034214SMatthew G. Knepley + dm - The DM object
2706b867d5aSJose E. Roman - p  - The point
27170034214SMatthew G. Knepley 
2726b867d5aSJose E. Roman   Input/Output Parameters:
2736b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE;
2746b867d5aSJose E. Roman             on output the number of adjacent points
2756b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize;
2766b867d5aSJose E. Roman         on output contains the adjacent points
27770034214SMatthew G. Knepley 
27870034214SMatthew G. Knepley   Level: advanced
27970034214SMatthew G. Knepley 
28095452b02SPatrick Sanan   Notes:
28195452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
28270034214SMatthew G. Knepley 
283db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()`
28470034214SMatthew G. Knepley @*/
28570034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
28670034214SMatthew G. Knepley {
2871cf84007SMatthew G. Knepley   PetscBool      useCone, useClosure, useAnchors;
28870034214SMatthew G. Knepley 
28970034214SMatthew G. Knepley   PetscFunctionBeginHot;
29070034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
291dadcf809SJacob Faibussowitsch   PetscValidIntPointer(adjSize,3);
29270034214SMatthew G. Knepley   PetscValidPointer(adj,4);
2939566063dSJacob Faibussowitsch   PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
2949566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
2959566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj));
29670034214SMatthew G. Knepley   PetscFunctionReturn(0);
29770034214SMatthew G. Knepley }
29808633170SToby Isaac 
299b0a623aaSMatthew G. Knepley /*@
300b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
301b0a623aaSMatthew G. Knepley 
302d083f849SBarry Smith   Collective on dm
303b0a623aaSMatthew G. Knepley 
304b0a623aaSMatthew G. Knepley   Input Parameters:
305b0a623aaSMatthew G. Knepley + dm      - The DM
3066b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity
3076b867d5aSJose E. Roman . rootRankSection -
3086b867d5aSJose E. Roman . rootRanks -
3096b867d5aSJose E. Roman . leftRankSection -
3106b867d5aSJose E. Roman - leafRanks -
311b0a623aaSMatthew G. Knepley 
312b0a623aaSMatthew G. Knepley   Output Parameters:
313b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
314b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
315b0a623aaSMatthew G. Knepley 
316b0a623aaSMatthew G. Knepley   Level: developer
317b0a623aaSMatthew G. Knepley 
318db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()`
319b0a623aaSMatthew G. Knepley @*/
320b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
321b0a623aaSMatthew G. Knepley {
322b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
323b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
324b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
325b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
326b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
327b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
328b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3299852e123SBarry Smith   PetscMPIInt        size, proc, rank;
330b0a623aaSMatthew G. Knepley 
331b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
332b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
333b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
334064a246eSJacob Faibussowitsch   if (processRanks) {PetscValidPointer(processRanks, 7);}
335064a246eSJacob Faibussowitsch   if (sfProcess)    {PetscValidPointer(sfProcess, 8);}
3369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size));
3379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank));
3389566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints));
3399566063dSJacob Faibussowitsch   PetscCall(PetscBTCreate(size, &neighbors));
3409566063dSJacob Faibussowitsch   PetscCall(PetscBTMemzero(size, neighbors));
341b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
3429566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd));
3439566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootRanks, &nranks));
344b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
345b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
346b0a623aaSMatthew G. Knepley 
3479566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof));
3489566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff));
3499566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n]));
350b0a623aaSMatthew G. Knepley   }
3519566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootRanks, &nranks));
352b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
3539566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd));
3549566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafRanks, &nranks));
355b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
356b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
357b0a623aaSMatthew G. Knepley 
3589566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof));
3599566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff));
3609566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff+n]));
361b0a623aaSMatthew G. Knepley   }
3629566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafRanks, &nranks));
363b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
364b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
365b0a623aaSMatthew G. Knepley   /* Calculate edges */
366b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3679852e123SBarry Smith   for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
3689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &ranksNew));
3699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &localPointsNew));
3709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew));
3719852e123SBarry Smith   for (proc = 0, n = 0; proc < size; ++proc) {
372b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
373b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
374b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
375b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
376b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
377b0a623aaSMatthew G. Knepley       ++n;
378b0a623aaSMatthew G. Knepley     }
379b0a623aaSMatthew G. Knepley   }
3809566063dSJacob Faibussowitsch   PetscCall(PetscBTDestroy(&neighbors));
3819566063dSJacob Faibussowitsch   if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks));
3829566063dSJacob Faibussowitsch   else              PetscCall(PetscFree(ranksNew));
383b0a623aaSMatthew G. Knepley   if (sfProcess) {
3849566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess));
3859566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF"));
3869566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(*sfProcess));
3879566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER));
388b0a623aaSMatthew G. Knepley   }
389b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
390b0a623aaSMatthew G. Knepley }
391b0a623aaSMatthew G. Knepley 
392b0a623aaSMatthew G. Knepley /*@
393b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
394b0a623aaSMatthew G. Knepley 
395d083f849SBarry Smith   Collective on dm
396b0a623aaSMatthew G. Knepley 
397b0a623aaSMatthew G. Knepley   Input Parameter:
398b0a623aaSMatthew G. Knepley . dm - The DM
399b0a623aaSMatthew G. Knepley 
400b0a623aaSMatthew G. Knepley   Output Parameters:
401b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
402b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
403b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
404b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
405b0a623aaSMatthew G. Knepley 
406b0a623aaSMatthew G. Knepley   Level: developer
407b0a623aaSMatthew G. Knepley 
408db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
409b0a623aaSMatthew G. Knepley @*/
410b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
411b0a623aaSMatthew G. Knepley {
412b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
413b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
414b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
415b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
416b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
417b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
418b0a623aaSMatthew G. Knepley 
419b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
4219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
4229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
4239566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
424b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
4259566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) rootSection, "Root Section"));
4269566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd));
4279566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree));
4289566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree));
4299566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]));
4309566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(rootSection));
431b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
4329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(rootSection, &nedges));
4339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pEnd-pStart, &myrank));
4349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nedges,  &remoterank));
435b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
4369566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank));
4379566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank));
4389566063dSJacob Faibussowitsch   PetscCall(PetscFree(myrank));
4399566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank));
440b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
4419566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) leafSection, "Leaf Section"));
4429566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank));
443b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
444b0a623aaSMatthew G. Knepley }
445b0a623aaSMatthew G. Knepley 
446*c506a872SMatthew G. Knepley #if 0
447*c506a872SMatthew G. Knepley static PetscErrorCode DMPlexCopyOverlapLabels(DM dm, DM ndm)
448*c506a872SMatthew G. Knepley {
449*c506a872SMatthew G. Knepley   DM_Plex *mesh  = (DM_Plex *) dm->data;
450*c506a872SMatthew G. Knepley   DM_Plex *nmesh = (DM_Plex *) ndm->data;
451*c506a872SMatthew G. Knepley 
452*c506a872SMatthew G. Knepley   PetscFunctionBegin;
453*c506a872SMatthew G. Knepley   if (mesh->numOvLabels) {
454*c506a872SMatthew G. Knepley     const char *name;
455*c506a872SMatthew G. Knepley     PetscInt    l;
456*c506a872SMatthew G. Knepley 
457*c506a872SMatthew G. Knepley     nmesh->numOvLabels = mesh->numOvLabels;
458*c506a872SMatthew G. Knepley     for (l = 0; l < mesh->numOvLabels; ++l) {
459*c506a872SMatthew G. Knepley       PetscCall(PetscObjectGetName((PetscObject) mesh->ovLabels[l], &name));
460*c506a872SMatthew G. Knepley       PetscCall(DMGetLabel(ndm, name, &nmesh->ovLabels[l]));
461*c506a872SMatthew G. Knepley       nmesh->ovValues[l] = mesh->ovValues[l];
462*c506a872SMatthew G. Knepley     }
463*c506a872SMatthew G. Knepley     PetscCall(PetscObjectGetName((PetscObject) mesh->ovExLabel, &name));
464*c506a872SMatthew G. Knepley     PetscCall(DMGetLabel(ndm, name, &nmesh->ovExLabel));
465*c506a872SMatthew G. Knepley     nmesh->ovExValue = mesh->ovExValue;
466*c506a872SMatthew G. Knepley   }
467*c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
468*c506a872SMatthew G. Knepley }
469*c506a872SMatthew G. Knepley #endif
470*c506a872SMatthew G. Knepley 
471278397a0SMatthew G. Knepley /*@C
472*c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes
473b0a623aaSMatthew G. Knepley 
474d083f849SBarry Smith   Collective on dm
475b0a623aaSMatthew G. Knepley 
476b0a623aaSMatthew G. Knepley   Input Parameters:
477b0a623aaSMatthew G. Knepley + dm          - The DM
47824d039d7SMichael Lange . levels      - Number of overlap levels
479b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
480b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
481b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
482b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
483b0a623aaSMatthew G. Knepley 
484064ec1f3Sprj-   Output Parameter:
485b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
486b0a623aaSMatthew G. Knepley 
487b0a623aaSMatthew G. Knepley   Level: developer
488b0a623aaSMatthew G. Knepley 
489*c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
490b0a623aaSMatthew G. Knepley @*/
491dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
492b0a623aaSMatthew G. Knepley {
493e540f424SMichael Lange   MPI_Comm           comm;
494b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
495874ddda9SLisandro Dalcin   PetscSF            sfPoint;
496b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
497b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4981fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
499b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
5001fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
5019852e123SBarry Smith   PetscMPIInt        rank, size;
50231bc6364SLisandro Dalcin   PetscBool          flg;
503b0a623aaSMatthew G. Knepley 
504b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
5056ba1a4c7SVaclav Hapla   *ovLabel = NULL;
5069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
5079566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5096ba1a4c7SVaclav Hapla   if (size == 1) PetscFunctionReturn(0);
5109566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
5119566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
512d1674c6dSMatthew Knepley   if (!levels) {
513d1674c6dSMatthew Knepley     /* Add owned points */
5149566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
5159566063dSJacob Faibussowitsch     for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
516d1674c6dSMatthew Knepley     PetscFunctionReturn(0);
517d1674c6dSMatthew Knepley   }
5189566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
5199566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
5209566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
521b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
522b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
523b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
524b0a623aaSMatthew G. Knepley 
5259566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj));
5269566063dSJacob Faibussowitsch     for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank));
527b0a623aaSMatthew G. Knepley   }
5289566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootrank, &rrank));
5299566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafrank, &nrank));
530b0a623aaSMatthew G. Knepley   /* Handle roots */
531b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
532b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
533b0a623aaSMatthew G. Knepley 
534b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
535b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
5369566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(leafSection, p, &neighbors));
537b0a623aaSMatthew G. Knepley       if (neighbors) {
5389566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(leafSection, p, &noff));
5399566063dSJacob Faibussowitsch         PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
540b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
541b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
542b0a623aaSMatthew G. Knepley 
543b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
5449566063dSJacob Faibussowitsch           for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
545b0a623aaSMatthew G. Knepley         }
546b0a623aaSMatthew G. Knepley       }
547b0a623aaSMatthew G. Knepley     }
548b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
5499566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootSection, p, &neighbors));
550b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
5519566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootSection, p, &noff));
5529566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
553b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
554b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
555b0a623aaSMatthew G. Knepley 
556b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
5579566063dSJacob Faibussowitsch       for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
558b0a623aaSMatthew G. Knepley     }
559b0a623aaSMatthew G. Knepley   }
5609566063dSJacob Faibussowitsch   PetscCall(PetscFree(adj));
5619566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootrank, &rrank));
5629566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafrank, &nrank));
56324d039d7SMichael Lange   /* Add additional overlap levels */
564be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
565be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
5669566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank));
567be200f8dSMichael Lange     /* Add next level of point donations to the label */
5689566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank));
569be200f8dSMichael Lange   }
57026a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5719566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
5729566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg));
573e540f424SMichael Lange   if (flg) {
574825f8a23SLisandro Dalcin     PetscViewer viewer;
5759566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
5769566063dSJacob Faibussowitsch     PetscCall(DMLabelView(ovAdjByRank, viewer));
577b0a623aaSMatthew G. Knepley   }
578874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
5799566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
5809566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
581a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
5829566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
583e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
5849566063dSJacob Faibussowitsch     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
5859566063dSJacob Faibussowitsch     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
586e540f424SMichael Lange   }
587e540f424SMichael Lange   /* Clean up */
5889566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&ovAdjByRank));
589b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
590b0a623aaSMatthew G. Knepley }
59170034214SMatthew G. Knepley 
592*c506a872SMatthew G. Knepley static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank)
593*c506a872SMatthew G. Knepley {
594*c506a872SMatthew G. Knepley   PetscInt neighbors, el;
595*c506a872SMatthew G. Knepley 
596*c506a872SMatthew G. Knepley   PetscFunctionBegin;
597*c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetDof(section, p, &neighbors));
598*c506a872SMatthew G. Knepley   if (neighbors) {
599*c506a872SMatthew G. Knepley     PetscInt   *adj = NULL;
600*c506a872SMatthew G. Knepley     PetscInt    adjSize = PETSC_DETERMINE, noff, n, a;
601*c506a872SMatthew G. Knepley     PetscMPIInt rank;
602*c506a872SMatthew G. Knepley 
603*c506a872SMatthew G. Knepley     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank));
604*c506a872SMatthew G. Knepley     PetscCall(PetscSectionGetOffset(section, p, &noff));
605*c506a872SMatthew G. Knepley     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
606*c506a872SMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
607*c506a872SMatthew G. Knepley       const PetscInt remoteRank = ranks[noff+n];
608*c506a872SMatthew G. Knepley 
609*c506a872SMatthew G. Knepley       if (remoteRank == rank) continue;
610*c506a872SMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {
611*c506a872SMatthew G. Knepley         PetscBool insert = PETSC_TRUE;
612*c506a872SMatthew G. Knepley 
613*c506a872SMatthew G. Knepley         for (el = 0; el < numExLabels; ++el) {
614*c506a872SMatthew G. Knepley           PetscInt exVal;
615*c506a872SMatthew G. Knepley           PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
616*c506a872SMatthew G. Knepley           if (exVal == exValue[el]) {insert = PETSC_FALSE; break;}
617*c506a872SMatthew G. Knepley         }
618*c506a872SMatthew G. Knepley         if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
619*c506a872SMatthew G. Knepley       }
620*c506a872SMatthew G. Knepley     }
621*c506a872SMatthew G. Knepley   }
622*c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
623*c506a872SMatthew G. Knepley }
624*c506a872SMatthew G. Knepley 
625*c506a872SMatthew G. Knepley /*@C
626*c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes
627*c506a872SMatthew G. Knepley 
628*c506a872SMatthew G. Knepley   Collective on dm
629*c506a872SMatthew G. Knepley 
630*c506a872SMatthew G. Knepley   Input Parameters:
631*c506a872SMatthew G. Knepley + dm          - The DM
632*c506a872SMatthew G. Knepley . numLabels   - The number of labels to draw candidate points from
633*c506a872SMatthew G. Knepley . label       - An array of labels containing candidate points
634*c506a872SMatthew G. Knepley . value       - An array of label values marking the candidate points
635*c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion
636*c506a872SMatthew G. Knepley . exLabel     - An array of labels indicating points to be excluded, or NULL
637*c506a872SMatthew G. Knepley . exValue     - An array of label values to be excluded, or NULL
638*c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point
639*c506a872SMatthew G. Knepley . rootrank    - The rank of each edge into the root point
640*c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
641*c506a872SMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
642*c506a872SMatthew G. Knepley 
643*c506a872SMatthew G. Knepley   Output Parameter:
644*c506a872SMatthew G. Knepley . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
645*c506a872SMatthew G. Knepley 
646*c506a872SMatthew G. Knepley   Note:
647*c506a872SMatthew G. Knepley   The candidate points are only added to the overlap if they are adjacent to a shared point
648*c506a872SMatthew G. Knepley 
649*c506a872SMatthew G. Knepley   Level: developer
650*c506a872SMatthew G. Knepley 
651*c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
652*c506a872SMatthew G. Knepley @*/
653*c506a872SMatthew G. Knepley PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[],
654*c506a872SMatthew G. Knepley   PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
655*c506a872SMatthew G. Knepley {
656*c506a872SMatthew G. Knepley   MPI_Comm           comm;
657*c506a872SMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
658*c506a872SMatthew G. Knepley   PetscSF            sfPoint;
659*c506a872SMatthew G. Knepley   const PetscSFNode *remote;
660*c506a872SMatthew G. Knepley   const PetscInt    *local;
661*c506a872SMatthew G. Knepley   const PetscInt    *nrank, *rrank;
662*c506a872SMatthew G. Knepley   PetscInt          *adj = NULL;
663*c506a872SMatthew G. Knepley   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l, el;
664*c506a872SMatthew G. Knepley   PetscMPIInt        rank, size;
665*c506a872SMatthew G. Knepley   PetscBool          flg;
666*c506a872SMatthew G. Knepley 
667*c506a872SMatthew G. Knepley   PetscFunctionBegin;
668*c506a872SMatthew G. Knepley   *ovLabel = NULL;
669*c506a872SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
670*c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
671*c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
672*c506a872SMatthew G. Knepley   if (size == 1) PetscFunctionReturn(0);
673*c506a872SMatthew G. Knepley   PetscCall(DMGetPointSF(dm, &sfPoint));
674*c506a872SMatthew G. Knepley   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
675*c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
676*c506a872SMatthew G. Knepley   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
677*c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
678*c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(rootrank, &rrank));
679*c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(leafrank, &nrank));
680*c506a872SMatthew G. Knepley   for (l = 0; l < numLabels; ++l) {
681*c506a872SMatthew G. Knepley     IS              valIS;
682*c506a872SMatthew G. Knepley     const PetscInt *points;
683*c506a872SMatthew G. Knepley     PetscInt        n;
684*c506a872SMatthew G. Knepley 
685*c506a872SMatthew G. Knepley     PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS));
686*c506a872SMatthew G. Knepley     if (!valIS) continue;
687*c506a872SMatthew G. Knepley     PetscCall(ISGetIndices(valIS, &points));
688*c506a872SMatthew G. Knepley     PetscCall(ISGetLocalSize(valIS, &n));
689*c506a872SMatthew G. Knepley     for (PetscInt i = 0; i < n; ++i) {
690*c506a872SMatthew G. Knepley       const PetscInt p = points[i];
691*c506a872SMatthew G. Knepley 
692*c506a872SMatthew G. Knepley       if ((p >= sStart) && (p < sEnd)) {
693*c506a872SMatthew G. Knepley         PetscInt loc, adjSize = PETSC_DETERMINE;
694*c506a872SMatthew G. Knepley 
695*c506a872SMatthew G. Knepley         /* Handle leaves: shared with the root point */
696*c506a872SMatthew G. Knepley         if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc));
697*c506a872SMatthew G. Knepley         else       loc = (p >= 0 && p < nleaves) ? p : -1;
698*c506a872SMatthew G. Knepley         if (loc >= 0) {
699*c506a872SMatthew G. Knepley           const PetscInt remoteRank = remote[loc].rank;
700*c506a872SMatthew G. Knepley 
701*c506a872SMatthew G. Knepley           PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
702*c506a872SMatthew G. Knepley           for (PetscInt a = 0; a < adjSize; ++a) {
703*c506a872SMatthew G. Knepley             PetscBool insert = PETSC_TRUE;
704*c506a872SMatthew G. Knepley 
705*c506a872SMatthew G. Knepley             for (el = 0; el < numExLabels; ++el) {
706*c506a872SMatthew G. Knepley               PetscInt exVal;
707*c506a872SMatthew G. Knepley               PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
708*c506a872SMatthew G. Knepley               if (exVal == exValue[el]) {insert = PETSC_FALSE; break;}
709*c506a872SMatthew G. Knepley             }
710*c506a872SMatthew G. Knepley             if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
711*c506a872SMatthew G. Knepley           }
712*c506a872SMatthew G. Knepley         }
713*c506a872SMatthew G. Knepley         /* Some leaves share a root with other leaves on different processes */
714*c506a872SMatthew G. Knepley         HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank);
715*c506a872SMatthew G. Knepley       }
716*c506a872SMatthew G. Knepley       /* Roots are shared with leaves */
717*c506a872SMatthew G. Knepley       HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank);
718*c506a872SMatthew G. Knepley     }
719*c506a872SMatthew G. Knepley     PetscCall(ISRestoreIndices(valIS, &points));
720*c506a872SMatthew G. Knepley     PetscCall(ISDestroy(&valIS));
721*c506a872SMatthew G. Knepley   }
722*c506a872SMatthew G. Knepley   PetscCall(PetscFree(adj));
723*c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(rootrank, &rrank));
724*c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(leafrank, &nrank));
725*c506a872SMatthew G. Knepley   /* We require the closure in the overlap */
726*c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
727*c506a872SMatthew G. Knepley   PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg));
728*c506a872SMatthew G. Knepley   if (flg) {
729*c506a872SMatthew G. Knepley     PetscViewer viewer;
730*c506a872SMatthew G. Knepley     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
731*c506a872SMatthew G. Knepley     PetscCall(DMLabelView(ovAdjByRank, viewer));
732*c506a872SMatthew G. Knepley   }
733*c506a872SMatthew G. Knepley   /* Invert sender to receiver label */
734*c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
735*c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
736*c506a872SMatthew G. Knepley   /* Add owned points, except for shared local points */
737*c506a872SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
738*c506a872SMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
739*c506a872SMatthew G. Knepley     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
740*c506a872SMatthew G. Knepley     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
741*c506a872SMatthew G. Knepley   }
742*c506a872SMatthew G. Knepley   /* Clean up */
743*c506a872SMatthew G. Knepley   PetscCall(DMLabelDestroy(&ovAdjByRank));
744*c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
745*c506a872SMatthew G. Knepley }
746*c506a872SMatthew G. Knepley 
74724cc2ca5SMatthew G. Knepley /*@C
74824cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
74924cc2ca5SMatthew G. Knepley 
750d083f849SBarry Smith   Collective on dm
75124cc2ca5SMatthew G. Knepley 
75224cc2ca5SMatthew G. Knepley   Input Parameters:
75324cc2ca5SMatthew G. Knepley + dm          - The DM
75424cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
75524cc2ca5SMatthew G. Knepley 
756064ec1f3Sprj-   Output Parameter:
757a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
75824cc2ca5SMatthew G. Knepley 
75924cc2ca5SMatthew G. Knepley   Level: developer
76024cc2ca5SMatthew G. Knepley 
761db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()`
76224cc2ca5SMatthew G. Knepley @*/
76346f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
76446f9b1c3SMichael Lange {
76546f9b1c3SMichael Lange   MPI_Comm           comm;
7669852e123SBarry Smith   PetscMPIInt        rank, size;
76746f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
76846f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
76946f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
77046f9b1c3SMichael Lange   PetscSFNode       *iremote;
77146f9b1c3SMichael Lange   PetscSF            pointSF;
77246f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
77346f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
77446f9b1c3SMichael Lange 
77546f9b1c3SMichael Lange   PetscFunctionBegin;
77646f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
7789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
7799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
7809566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
78146f9b1c3SMichael Lange 
78246f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
7839566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote));
7849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
78546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
7869566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
78746f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
78846f9b1c3SMichael Lange   }
78946f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
7909566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE));
7919566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths,MPI_REPLACE));
79246f9b1c3SMichael Lange 
7932d4ee042Sprj-   /* Count received points in each stratum and compute the internal strata shift */
7949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx));
79546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
79646f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
79746f9b1c3SMichael Lange   depthShift[dim] = 0;
79846f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
79946f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
80046f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
80146f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
8029566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
80346f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
80446f9b1c3SMichael Lange   }
80546f9b1c3SMichael Lange 
80646f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
8079566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
80846f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
8099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &ilocal));
8109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &iremote));
81146f9b1c3SMichael Lange   /* First map local points to themselves */
81246f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
8139566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
81446f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
81546f9b1c3SMichael Lange       point = p + depthShift[d];
81646f9b1c3SMichael Lange       ilocal[point] = point;
81746f9b1c3SMichael Lange       iremote[point].index = p;
81846f9b1c3SMichael Lange       iremote[point].rank = rank;
81946f9b1c3SMichael Lange       depthIdx[d]++;
82046f9b1c3SMichael Lange     }
82146f9b1c3SMichael Lange   }
82246f9b1c3SMichael Lange 
82346f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
8249566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &pointSF));
8259566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote));
82646f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
8279566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
82846f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
82946f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
83046f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
83146f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
83246f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
83346f9b1c3SMichael Lange       }
83446f9b1c3SMichael Lange     }
83546f9b1c3SMichael Lange   }
83646f9b1c3SMichael Lange 
83746f9b1c3SMichael Lange   /* Now add the incoming overlap points */
83846f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
83946f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
84046f9b1c3SMichael Lange     ilocal[point] = point;
84146f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
84246f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
84346f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
84446f9b1c3SMichael Lange   }
8459566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths,remoteDepths));
84646f9b1c3SMichael Lange 
8479566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
8489566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF"));
8499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*migrationSF));
8509566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
8519566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
85246f9b1c3SMichael Lange 
8539566063dSJacob Faibussowitsch   PetscCall(PetscFree3(depthRecv, depthShift, depthIdx));
85470034214SMatthew G. Knepley   PetscFunctionReturn(0);
85570034214SMatthew G. Knepley }
85670034214SMatthew G. Knepley 
857a9f1d5b2SMichael Lange /*@
858f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
859a9f1d5b2SMichael Lange 
860064ec1f3Sprj-   Input Parameters:
861a9f1d5b2SMichael Lange + dm          - The DM
862a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
863a9f1d5b2SMichael Lange 
864a9f1d5b2SMichael Lange   Output Parameter:
865a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
866a9f1d5b2SMichael Lange 
867412e9a14SMatthew G. Knepley   Note:
868412e9a14SMatthew G. Knepley   This lexicographically sorts by (depth, cellType)
869412e9a14SMatthew G. Knepley 
870a9f1d5b2SMichael Lange   Level: developer
871a9f1d5b2SMichael Lange 
872db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
873a9f1d5b2SMichael Lange @*/
874a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
875a9f1d5b2SMichael Lange {
876a9f1d5b2SMichael Lange   MPI_Comm           comm;
8779852e123SBarry Smith   PetscMPIInt        rank, size;
878412e9a14SMatthew G. Knepley   PetscInt           d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves;
879412e9a14SMatthew G. Knepley   PetscSFNode       *pointDepths, *remoteDepths;
880412e9a14SMatthew G. Knepley   PetscInt          *ilocal;
881a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
882412e9a14SMatthew G. Knepley   PetscInt          *ctRecv,    *ctShift,    *ctIdx;
883a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
884a9f1d5b2SMichael Lange 
885a9f1d5b2SMichael Lange   PetscFunctionBegin;
886a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8879566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
8889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
8899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
8909566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &ldepth));
8919566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
8921c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm));
89363a3b9bcSJacob Faibussowitsch   PetscCheck(!(ldepth >= 0) || !(depth != ldepth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth);
8949566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0));
895a9f1d5b2SMichael Lange 
896a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
8979566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote));
8989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
8997fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
9009566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
901f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
902412e9a14SMatthew G. Knepley       DMPolytopeType ct;
903f0e73a3dSToby Isaac 
9049566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, p, &ct));
905412e9a14SMatthew G. Knepley       pointDepths[p].index = d;
906412e9a14SMatthew G. Knepley       pointDepths[p].rank  = ct;
907f0e73a3dSToby Isaac     }
908412e9a14SMatthew G. Knepley   }
909412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;}
9109566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE));
9119566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths,MPI_REPLACE));
912412e9a14SMatthew G. Knepley   /* Count received points in each stratum and compute the internal strata shift */
9139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx));
914412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
915412e9a14SMatthew G. Knepley     if (remoteDepths[p].rank < 0) {
916412e9a14SMatthew G. Knepley       ++depthRecv[remoteDepths[p].index];
917412e9a14SMatthew G. Knepley     } else {
918412e9a14SMatthew G. Knepley       ++ctRecv[remoteDepths[p].rank];
919412e9a14SMatthew G. Knepley     }
920412e9a14SMatthew G. Knepley   }
921412e9a14SMatthew G. Knepley   {
922412e9a14SMatthew G. Knepley     PetscInt depths[4], dims[4], shift = 0, i, c;
923412e9a14SMatthew G. Knepley 
9248238f61eSMatthew G. Knepley     /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1)
9258238f61eSMatthew G. Knepley          Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells
9268238f61eSMatthew G. Knepley      */
927412e9a14SMatthew G. Knepley     depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1;
928412e9a14SMatthew G. Knepley     dims[0]   = dim;   dims[1]   = 0; dims[2]   = dim-1;   dims[3]   = 1;
929412e9a14SMatthew G. Knepley     for (i = 0; i <= depth; ++i) {
930412e9a14SMatthew G. Knepley       const PetscInt dep = depths[i];
931412e9a14SMatthew G. Knepley       const PetscInt dim = dims[i];
932412e9a14SMatthew G. Knepley 
933412e9a14SMatthew G. Knepley       for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
9348238f61eSMatthew G. Knepley         if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue;
935412e9a14SMatthew G. Knepley         ctShift[c] = shift;
936412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
937412e9a14SMatthew G. Knepley       }
938412e9a14SMatthew G. Knepley       depthShift[dep] = shift;
939412e9a14SMatthew G. Knepley       shift          += depthRecv[dep];
940412e9a14SMatthew G. Knepley     }
941412e9a14SMatthew G. Knepley     for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
942412e9a14SMatthew G. Knepley       const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c);
943412e9a14SMatthew G. Knepley 
9448238f61eSMatthew G. Knepley       if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) {
945412e9a14SMatthew G. Knepley         ctShift[c] = shift;
946412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
947412e9a14SMatthew G. Knepley       }
948412e9a14SMatthew G. Knepley     }
949412e9a14SMatthew G. Knepley   }
950a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
9519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &ilocal));
9527fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
953412e9a14SMatthew G. Knepley     const PetscInt       dep = remoteDepths[p].index;
954412e9a14SMatthew G. Knepley     const DMPolytopeType ct  = (DMPolytopeType) remoteDepths[p].rank;
9557fab53ddSMatthew G. Knepley 
956412e9a14SMatthew G. Knepley     if ((PetscInt) ct < 0) {
9577fab53ddSMatthew G. Knepley       ilocal[p] = depthShift[dep] + depthIdx[dep];
958412e9a14SMatthew G. Knepley       ++depthIdx[dep];
959412e9a14SMatthew G. Knepley     } else {
960412e9a14SMatthew G. Knepley       ilocal[p] = ctShift[ct] + ctIdx[ct];
961412e9a14SMatthew G. Knepley       ++ctIdx[ct];
962412e9a14SMatthew G. Knepley     }
963a9f1d5b2SMichael Lange   }
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
9659566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *migrationSF, "Migration SF"));
9669566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode*)iremote, PETSC_COPY_VALUES));
9679566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths,remoteDepths));
9689566063dSJacob Faibussowitsch   PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx));
9699566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0));
970a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
971a9f1d5b2SMichael Lange }
972a9f1d5b2SMichael Lange 
97370034214SMatthew G. Knepley /*@
97470034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
97570034214SMatthew G. Knepley 
976d083f849SBarry Smith   Collective on dm
97770034214SMatthew G. Knepley 
97870034214SMatthew G. Knepley   Input Parameters:
97970034214SMatthew G. Knepley + dm - The DMPlex object
98070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
98170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
982cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
98370034214SMatthew G. Knepley 
98470034214SMatthew G. Knepley   Output Parameters:
98570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
986cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
98770034214SMatthew G. Knepley 
98870034214SMatthew G. Knepley   Level: developer
98970034214SMatthew G. Knepley 
990db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()`
99170034214SMatthew G. Knepley @*/
99270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
99370034214SMatthew G. Knepley {
99470034214SMatthew G. Knepley   PetscSF        fieldSF;
99570034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
99670034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
99770034214SMatthew G. Knepley 
99870034214SMatthew G. Knepley   PetscFunctionBegin;
9999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0));
10009566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
100170034214SMatthew G. Knepley 
10029566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10039566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE));
10049566063dSJacob Faibussowitsch   PetscCall(VecSetType(newVec,dm->vectype));
100570034214SMatthew G. Knepley 
10069566063dSJacob Faibussowitsch   PetscCall(VecGetArray(originalVec, &originalValues));
10079566063dSJacob Faibussowitsch   PetscCall(VecGetArray(newVec, &newValues));
10089566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10099566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10109566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE));
10119566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues,MPI_REPLACE));
10129566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(newVec, &newValues));
10149566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(originalVec, &originalValues));
10159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0));
101670034214SMatthew G. Knepley   PetscFunctionReturn(0);
101770034214SMatthew G. Knepley }
101870034214SMatthew G. Knepley 
101970034214SMatthew G. Knepley /*@
102070034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
102170034214SMatthew G. Knepley 
1022d083f849SBarry Smith   Collective on dm
102370034214SMatthew G. Knepley 
102470034214SMatthew G. Knepley   Input Parameters:
102570034214SMatthew G. Knepley + dm - The DMPlex object
102670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
102770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
102870034214SMatthew G. Knepley - originalIS - The existing data
102970034214SMatthew G. Knepley 
103070034214SMatthew G. Knepley   Output Parameters:
103170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
103270034214SMatthew G. Knepley - newIS - The new data
103370034214SMatthew G. Knepley 
103470034214SMatthew G. Knepley   Level: developer
103570034214SMatthew G. Knepley 
1036db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()`
103770034214SMatthew G. Knepley @*/
103870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
103970034214SMatthew G. Knepley {
104070034214SMatthew G. Knepley   PetscSF         fieldSF;
104170034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
104270034214SMatthew G. Knepley   const PetscInt *originalValues;
104370034214SMatthew G. Knepley 
104470034214SMatthew G. Knepley   PetscFunctionBegin;
10459566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0));
10469566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
104770034214SMatthew G. Knepley 
10489566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(fieldSize, &newValues));
105070034214SMatthew G. Knepley 
10519566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(originalIS, &originalValues));
10529566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10539566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10549566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE));
10559566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues,MPI_REPLACE));
10569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10579566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(originalIS, &originalValues));
10589566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS));
10599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0));
106070034214SMatthew G. Knepley   PetscFunctionReturn(0);
106170034214SMatthew G. Knepley }
106270034214SMatthew G. Knepley 
106370034214SMatthew G. Knepley /*@
106470034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
106570034214SMatthew G. Knepley 
1066d083f849SBarry Smith   Collective on dm
106770034214SMatthew G. Knepley 
106870034214SMatthew G. Knepley   Input Parameters:
106970034214SMatthew G. Knepley + dm - The DMPlex object
107070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
107170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
107270034214SMatthew G. Knepley . datatype - The type of data
107370034214SMatthew G. Knepley - originalData - The existing data
107470034214SMatthew G. Knepley 
107570034214SMatthew G. Knepley   Output Parameters:
107670034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
107770034214SMatthew G. Knepley - newData - The new data
107870034214SMatthew G. Knepley 
107970034214SMatthew G. Knepley   Level: developer
108070034214SMatthew G. Knepley 
1081db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`
108270034214SMatthew G. Knepley @*/
108370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
108470034214SMatthew G. Knepley {
108570034214SMatthew G. Knepley   PetscSF        fieldSF;
108670034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
108770034214SMatthew G. Knepley   PetscMPIInt    dataSize;
108870034214SMatthew G. Knepley 
108970034214SMatthew G. Knepley   PetscFunctionBegin;
10909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0));
10919566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
109270034214SMatthew G. Knepley 
10939566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10949566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_size(datatype, &dataSize));
10959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc(fieldSize * dataSize, newData));
109670034214SMatthew G. Knepley 
10979566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10989566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10999566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData,MPI_REPLACE));
11009566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData,MPI_REPLACE));
11019566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
11029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0));
110370034214SMatthew G. Knepley   PetscFunctionReturn(0);
110470034214SMatthew G. Knepley }
110570034214SMatthew G. Knepley 
110624cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1107cc71bff1SMichael Lange {
1108cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
1109cc71bff1SMichael Lange   MPI_Comm               comm;
1110cc71bff1SMichael Lange   PetscSF                coneSF;
1111cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
1112ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
1113cc71bff1SMichael Lange   PetscBool              flg;
1114cc71bff1SMichael Lange 
1115cc71bff1SMichael Lange   PetscFunctionBegin;
1116cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11170c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
11189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0));
1119cc71bff1SMichael Lange   /* Distribute cone section */
11209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
11219566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dm, &originalConeSection));
11229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection));
11239566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection));
11249566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dmParallel));
1125cc71bff1SMichael Lange   /* Communicate and renumber cones */
11269566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF));
11279566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
11289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dm, &cones));
1129ac04eaf7SToby Isaac   if (original) {
1130ac04eaf7SToby Isaac     PetscInt numCones;
1131ac04eaf7SToby Isaac 
11329566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(originalConeSection,&numCones));
11339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numCones,&globCones));
11349566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones));
1135367003a6SStefano Zampini   } else {
1136ac04eaf7SToby Isaac     globCones = cones;
1137ac04eaf7SToby Isaac   }
11389566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dmParallel, &newCones));
11399566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE));
11409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones,MPI_REPLACE));
1141ac04eaf7SToby Isaac   if (original) {
11429566063dSJacob Faibussowitsch     PetscCall(PetscFree(globCones));
1143ac04eaf7SToby Isaac   }
11449566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize));
11459566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones));
114676bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
11473533c52bSMatthew G. Knepley     PetscInt  p;
11483533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
11493533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
115063a3b9bcSJacob Faibussowitsch       if (newCones[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank,p));}
11513533c52bSMatthew G. Knepley     }
115228b400f6SJacob Faibussowitsch     PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
11533533c52bSMatthew G. Knepley   }
11549566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg));
1155cc71bff1SMichael Lange   if (flg) {
11569566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Serial Cone Section:\n"));
11579566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm)));
11589566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n"));
11599566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm)));
11609566063dSJacob Faibussowitsch     PetscCall(PetscSFView(coneSF, NULL));
1161cc71bff1SMichael Lange   }
11629566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dm, &cones));
11639566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones));
11649566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE));
11659566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones,MPI_REPLACE));
11669566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&coneSF));
11679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0));
1168eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
1169cc71bff1SMichael Lange   {
1170cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1171cc71bff1SMichael Lange 
11729566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd));
11739566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd));
1174cc71bff1SMichael Lange   }
11759566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(dmParallel));
11769566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(dmParallel));
11771cf84007SMatthew G. Knepley   {
11781cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
11791cf84007SMatthew G. Knepley 
11809566063dSJacob Faibussowitsch     PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
11819566063dSJacob Faibussowitsch     PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure));
11829566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
11839566063dSJacob Faibussowitsch     PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors));
11841cf84007SMatthew G. Knepley   }
1185cc71bff1SMichael Lange   PetscFunctionReturn(0);
1186cc71bff1SMichael Lange }
1187cc71bff1SMichael Lange 
118824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
11890df0e737SMichael Lange {
11900df0e737SMichael Lange   MPI_Comm         comm;
11919318fe57SMatthew G. Knepley   DM               cdm, cdmParallel;
11920df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
11930df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
11940df0e737SMichael Lange   PetscInt         bs;
119590b157c4SStefano Zampini   PetscBool        isper;
11960df0e737SMichael Lange   const char      *name;
11970df0e737SMichael Lange   const PetscReal *maxCell, *L;
11985dc8c3f7SMatthew G. Knepley   const DMBoundaryType *bd;
11990df0e737SMichael Lange 
12000df0e737SMichael Lange   PetscFunctionBegin;
12010df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12020c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12030df0e737SMichael Lange 
12049566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12059566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dm, &originalCoordSection));
12069566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection));
12079566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates));
12080df0e737SMichael Lange   if (originalCoordinates) {
12099566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
12109566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject) originalCoordinates, &name));
12119566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject) newCoordinates, name));
12120df0e737SMichael Lange 
12139566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates));
12149566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates));
12159566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(originalCoordinates, &bs));
12169566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(newCoordinates, bs));
12179566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&newCoordinates));
12180df0e737SMichael Lange   }
12199566063dSJacob Faibussowitsch   PetscCall(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd));
12209566063dSJacob Faibussowitsch   PetscCall(DMSetPeriodicity(dmParallel, isper, maxCell, L, bd));
12219566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(dm, &cdm));
12229566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel));
12239566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(cdm, cdmParallel));
12240df0e737SMichael Lange   PetscFunctionReturn(0);
12250df0e737SMichael Lange }
12260df0e737SMichael Lange 
122724cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
12280df0e737SMichael Lange {
1229df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
12300df0e737SMichael Lange   MPI_Comm         comm;
12317980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
12320df0e737SMichael Lange   PetscMPIInt      rank;
12337980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1234df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1235df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
12360df0e737SMichael Lange 
12370df0e737SMichael Lange   PetscFunctionBegin;
12380df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12390c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12400c86c063SLisandro Dalcin 
12419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0));
12429566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
12440df0e737SMichael Lange 
1245df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
12469566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
12479566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
12489566063dSJacob Faibussowitsch   if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject) depthLabel, &depthState));
1249df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
12501c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm));
1251df0420ecSMatthew G. Knepley   if (sendDepth) {
12529566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel));
12539566063dSJacob Faibussowitsch     PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE));
1254df0420ecSMatthew G. Knepley   }
1255d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
12569566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &numLocalLabels));
1257d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
12589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm));
1259627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
12605d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1261bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
126283e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput = PETSC_TRUE, isOutput;
1263d67d17b1SMatthew G. Knepley     const char *name = NULL;
12640df0e737SMichael Lange 
1265d67d17b1SMatthew G. Knepley     if (hasLabels) {
12669566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
12670df0e737SMichael Lange       /* Skip "depth" because it is recreated */
12689566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject) label, &name));
12699566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &isDepth));
1270d67d17b1SMatthew G. Knepley     }
12719566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm));
127283e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
12739566063dSJacob Faibussowitsch     PetscCall(DMLabelDistribute(label, migrationSF, &labelNew));
127483e10cb3SLisandro Dalcin     if (isDepth) {
12757980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
12767980c9d4SMatthew G. Knepley       PetscInt gdepth;
12777980c9d4SMatthew G. Knepley 
12781c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm));
127963a3b9bcSJacob Faibussowitsch       PetscCheck(!(depth >= 0) || !(gdepth != depth),PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth);
12807980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
12817980c9d4SMatthew G. Knepley         PetscBool has;
12827980c9d4SMatthew G. Knepley 
12839566063dSJacob Faibussowitsch         PetscCall(DMLabelHasStratum(labelNew, d, &has));
12849566063dSJacob Faibussowitsch         if (!has) PetscCall(DMLabelAddStratum(labelNew, d));
12857980c9d4SMatthew G. Knepley       }
12867980c9d4SMatthew G. Knepley     }
12879566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmParallel, labelNew));
128883e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
12899566063dSJacob Faibussowitsch     if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput));
12901c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm));
12919566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject) labelNew, &name));
12929566063dSJacob Faibussowitsch     PetscCall(DMSetLabelOutput(dmParallel, name, isOutput));
12939566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&labelNew));
12940df0e737SMichael Lange   }
12959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0));
12960df0e737SMichael Lange   PetscFunctionReturn(0);
12970df0e737SMichael Lange }
12980df0e737SMichael Lange 
129924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1300a6f36705SMichael Lange {
130115078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
130215078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1303a6f36705SMichael Lange   MPI_Comm        comm;
1304a6f36705SMichael Lange   DM              refTree;
1305a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1306a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1307a6f36705SMichael Lange   PetscBool       flg;
1308a6f36705SMichael Lange 
1309a6f36705SMichael Lange   PetscFunctionBegin;
1310a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13110c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
13129566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1313a6f36705SMichael Lange 
1314a6f36705SMichael Lange   /* Set up tree */
13159566063dSJacob Faibussowitsch   PetscCall(DMPlexGetReferenceTree(dm,&refTree));
13169566063dSJacob Faibussowitsch   PetscCall(DMPlexSetReferenceTree(dmParallel,refTree));
13179566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL));
1318a6f36705SMichael Lange   if (origParentSection) {
1319a6f36705SMichael Lange     PetscInt        pStart, pEnd;
132008633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1321a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1322a6f36705SMichael Lange     PetscSF         parentSF;
1323a6f36705SMichael Lange 
13249566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd));
13259566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection));
13269566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(newParentSection,pStart,pEnd));
13279566063dSJacob Faibussowitsch     PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection));
13289566063dSJacob Faibussowitsch     PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF));
13299566063dSJacob Faibussowitsch     PetscCall(PetscFree(remoteOffsetsParents));
13309566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(newParentSection,&newParentSize));
13319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs));
133208633170SToby Isaac     if (original) {
133308633170SToby Isaac       PetscInt numParents;
133408633170SToby Isaac 
13359566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(origParentSection,&numParents));
13369566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numParents,&globParents));
13379566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents));
133808633170SToby Isaac     }
133908633170SToby Isaac     else {
134008633170SToby Isaac       globParents = origParents;
134108633170SToby Isaac     }
13429566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE));
13439566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents,MPI_REPLACE));
134408633170SToby Isaac     if (original) {
13459566063dSJacob Faibussowitsch       PetscCall(PetscFree(globParents));
134608633170SToby Isaac     }
13479566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE));
13489566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs,MPI_REPLACE));
13499566063dSJacob Faibussowitsch     PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents));
135076bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
13514a54e071SToby Isaac       PetscInt  p;
13524a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
13534a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
135463a3b9bcSJacob Faibussowitsch         if (newParents[p] < 0) {valid = PETSC_FALSE; PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p));}
13554a54e071SToby Isaac       }
135628b400f6SJacob Faibussowitsch       PetscCheck(valid,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
13574a54e071SToby Isaac     }
13589566063dSJacob Faibussowitsch     PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg));
1359a6f36705SMichael Lange     if (flg) {
13609566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Serial Parent Section: \n"));
13619566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm)));
13629566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n"));
13639566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm)));
13649566063dSJacob Faibussowitsch       PetscCall(PetscSFView(parentSF, NULL));
1365a6f36705SMichael Lange     }
13669566063dSJacob Faibussowitsch     PetscCall(DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs));
13679566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newParentSection));
13689566063dSJacob Faibussowitsch     PetscCall(PetscFree2(newParents,newChildIDs));
13699566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&parentSF));
1370a6f36705SMichael Lange   }
137115078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1372a6f36705SMichael Lange   PetscFunctionReturn(0);
1373a6f36705SMichael Lange }
13740df0e737SMichael Lange 
137524cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
13764eca1733SMichael Lange {
13779852e123SBarry Smith   PetscMPIInt            rank, size;
13784eca1733SMichael Lange   MPI_Comm               comm;
13794eca1733SMichael Lange 
13804eca1733SMichael Lange   PetscFunctionBegin;
13814eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13820c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
13834eca1733SMichael Lange 
13844eca1733SMichael Lange   /* Create point SF for parallel mesh */
13859566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0));
13869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
13879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
13889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
13894eca1733SMichael Lange   {
13904eca1733SMichael Lange     const PetscInt *leaves;
13914eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
13924eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
13934eca1733SMichael Lange     PetscInt        pStart, pEnd;
13944eca1733SMichael Lange 
13959566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd));
13969566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL));
13979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(numRoots,&rowners,numLeaves,&lowners));
13984eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
13994eca1733SMichael Lange       rowners[p].rank  = -1;
14004eca1733SMichael Lange       rowners[p].index = -1;
14014eca1733SMichael Lange     }
14029566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE));
14039566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE));
14044eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
14054eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
14064eca1733SMichael Lange         lowners[p].rank  = rank;
14074eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
14084eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
14094eca1733SMichael Lange         lowners[p].rank  = -2;
14104eca1733SMichael Lange         lowners[p].index = -2;
14114eca1733SMichael Lange       }
14124eca1733SMichael Lange     }
14134eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
14144eca1733SMichael Lange       rowners[p].rank  = -3;
14154eca1733SMichael Lange       rowners[p].index = -3;
14164eca1733SMichael Lange     }
14179566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC));
14189566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC));
14199566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE));
14209566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners,MPI_REPLACE));
14214eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
14221dca8a05SBarry Smith       PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
14234eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
14244eca1733SMichael Lange     }
14259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints));
14269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGhostPoints, &remotePoints));
14274eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
14284eca1733SMichael Lange       if (lowners[p].rank != rank) {
14294eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
14304eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
14314eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
14324eca1733SMichael Lange         ++gp;
14334eca1733SMichael Lange       }
14344eca1733SMichael Lange     }
14359566063dSJacob Faibussowitsch     PetscCall(PetscFree2(rowners,lowners));
14369566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER));
14379566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions((dmParallel)->sf));
14384eca1733SMichael Lange   }
14391cf84007SMatthew G. Knepley   {
14401cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
14411cf84007SMatthew G. Knepley 
14429566063dSJacob Faibussowitsch     PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
14439566063dSJacob Faibussowitsch     PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure));
14449566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
14459566063dSJacob Faibussowitsch     PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors));
14461cf84007SMatthew G. Knepley   }
14479566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0));
14484eca1733SMichael Lange   PetscFunctionReturn(0);
14494eca1733SMichael Lange }
14504eca1733SMichael Lange 
145198ba2d7fSLawrence Mitchell /*@
145298ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
145398ba2d7fSLawrence Mitchell 
145498ba2d7fSLawrence Mitchell   Input Parameters:
145598ba2d7fSLawrence Mitchell + dm - The DMPlex object
145698ba2d7fSLawrence Mitchell - flg - Balance the partition?
145798ba2d7fSLawrence Mitchell 
145898ba2d7fSLawrence Mitchell   Level: intermediate
145998ba2d7fSLawrence Mitchell 
1460db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()`
146198ba2d7fSLawrence Mitchell @*/
146298ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
146398ba2d7fSLawrence Mitchell {
146498ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
146598ba2d7fSLawrence Mitchell 
146698ba2d7fSLawrence Mitchell   PetscFunctionBegin;
146798ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
146898ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
146998ba2d7fSLawrence Mitchell }
147098ba2d7fSLawrence Mitchell 
147198ba2d7fSLawrence Mitchell /*@
147298ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
147398ba2d7fSLawrence Mitchell 
147498ba2d7fSLawrence Mitchell   Input Parameter:
1475a2b725a8SWilliam Gropp . dm - The DMPlex object
147698ba2d7fSLawrence Mitchell 
147798ba2d7fSLawrence Mitchell   Output Parameter:
1478a2b725a8SWilliam Gropp . flg - Balance the partition?
147998ba2d7fSLawrence Mitchell 
148098ba2d7fSLawrence Mitchell   Level: intermediate
148198ba2d7fSLawrence Mitchell 
1482db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()`
148398ba2d7fSLawrence Mitchell @*/
148498ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
148598ba2d7fSLawrence Mitchell {
148698ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
148798ba2d7fSLawrence Mitchell 
148898ba2d7fSLawrence Mitchell   PetscFunctionBegin;
148998ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1490534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
149198ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
149298ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
149398ba2d7fSLawrence Mitchell }
149498ba2d7fSLawrence Mitchell 
1495fc02256fSLawrence Mitchell typedef struct {
1496fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1497fc02256fSLawrence Mitchell } Petsc3Int;
1498fc02256fSLawrence Mitchell 
1499fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
15002eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype)
1501fc02256fSLawrence Mitchell {
1502fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1503fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1504fc02256fSLawrence Mitchell   PetscInt i, len = *len_;
1505fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1506fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1507fc02256fSLawrence Mitchell       a[i].vote = b[i].vote;
1508fc02256fSLawrence Mitchell       a[i].rank = b[i].rank;
1509fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1510fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1511fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1512fc02256fSLawrence Mitchell         a[i].rank = b[i].rank;
1513fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1514fc02256fSLawrence Mitchell       }
1515fc02256fSLawrence Mitchell     }
1516fc02256fSLawrence Mitchell   }
1517fc02256fSLawrence Mitchell }
1518fc02256fSLawrence Mitchell 
1519f5bf2dbfSMichael Lange /*@C
1520a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1521f5bf2dbfSMichael Lange 
1522064ec1f3Sprj-   Input Parameters:
1523f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1524f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
1525d8d19677SJose E. Roman - ownership   - Flag causing a vote to determine point ownership
1526f5bf2dbfSMichael Lange 
1527f5bf2dbfSMichael Lange   Output Parameter:
1528d8d19677SJose E. Roman . pointSF     - The star forest describing the point overlap in the remapped DM
1529f5bf2dbfSMichael Lange 
15303618482eSVaclav Hapla   Notes:
15313618482eSVaclav Hapla   Output pointSF is guaranteed to have the array of local indices (leaves) sorted.
15323618482eSVaclav Hapla 
1533f5bf2dbfSMichael Lange   Level: developer
1534f5bf2dbfSMichael Lange 
1535db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
1536f5bf2dbfSMichael Lange @*/
1537f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1538f5bf2dbfSMichael Lange {
153923193802SMatthew G. Knepley   PetscMPIInt        rank, size;
15401627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1541f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1542f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1543f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1544f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
154523193802SMatthew G. Knepley   Vec                shifts;
1546cae3e4f3SLawrence Mitchell   const PetscInt     numShifts = 13759;
154723193802SMatthew G. Knepley   const PetscScalar *shift = NULL;
154823193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
154998ba2d7fSLawrence Mitchell   PetscBool          balance;
1550f5bf2dbfSMichael Lange 
1551f5bf2dbfSMichael Lange   PetscFunctionBegin;
1552f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank));
15549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size));
15559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0));
1556f5bf2dbfSMichael Lange 
15579566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
15589566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots));
15599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes));
1560f5bf2dbfSMichael Lange   if (ownership) {
1561fc02256fSLawrence Mitchell     MPI_Op       op;
1562fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1563fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
156423193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
156598ba2d7fSLawrence Mitchell     if (balance) {
156623193802SMatthew G. Knepley       PetscRandom r;
156723193802SMatthew G. Knepley 
15689566063dSJacob Faibussowitsch       PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r));
15699566063dSJacob Faibussowitsch       PetscCall(PetscRandomSetInterval(r, 0, 2467*size));
15709566063dSJacob Faibussowitsch       PetscCall(VecCreate(PETSC_COMM_SELF, &shifts));
15719566063dSJacob Faibussowitsch       PetscCall(VecSetSizes(shifts, numShifts, numShifts));
15729566063dSJacob Faibussowitsch       PetscCall(VecSetType(shifts, VECSTANDARD));
15739566063dSJacob Faibussowitsch       PetscCall(VecSetRandom(shifts, r));
15749566063dSJacob Faibussowitsch       PetscCall(PetscRandomDestroy(&r));
15759566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(shifts, &shift));
157623193802SMatthew G. Knepley     }
157723193802SMatthew G. Knepley 
15789566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nroots, &rootVote));
15799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &leafVote));
158023193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1581f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
158223193802SMatthew G. Knepley       if (shiftDebug) {
158363a3b9bcSJacob Faibussowitsch         PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size));
158423193802SMatthew G. Knepley       }
1585f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1586fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size;
1587fc02256fSLawrence Mitchell       leafVote[p].rank = rank;
1588fc02256fSLawrence Mitchell       leafVote[p].index = p;
1589f5bf2dbfSMichael Lange     }
1590f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
15911627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1592fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1593fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1594fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1595f5bf2dbfSMichael Lange     }
15969566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype));
15979566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&datatype));
15989566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op));
15999566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op));
16009566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op));
16019566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_free(&op));
16029566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&datatype));
1603c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1604fc02256fSLawrence Mitchell       rootNodes[p].rank = rootVote[p].rank;
1605fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1606c091126eSLawrence Mitchell     }
16079566063dSJacob Faibussowitsch     PetscCall(PetscFree(leafVote));
16089566063dSJacob Faibussowitsch     PetscCall(PetscFree(rootVote));
1609f5bf2dbfSMichael Lange   } else {
1610f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1611f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1612f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1613fc02256fSLawrence Mitchell     }
1614f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1615f5bf2dbfSMichael Lange       /* Write new local id into old location */
1616f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
16176462276dSToby Isaac         rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1618f5bf2dbfSMichael Lange       }
1619f5bf2dbfSMichael Lange     }
1620f5bf2dbfSMichael Lange   }
16219566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE));
16229566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes,MPI_REPLACE));
1623f5bf2dbfSMichael Lange 
162423193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1625b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
162623193802SMatthew G. Knepley   }
16279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointLocal));
16289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointRemote));
1629f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1630b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
16313618482eSVaclav Hapla       /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */
1632f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1633f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1634f5bf2dbfSMichael Lange       idx++;
1635f5bf2dbfSMichael Lange     }
1636f5bf2dbfSMichael Lange   }
163723193802SMatthew G. Knepley   if (shift) {
16389566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(shifts, &shift));
16399566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&shifts));
164023193802SMatthew G. Knepley   }
16419566063dSJacob Faibussowitsch   if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT));
16429566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF));
16439566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*pointSF));
16449566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER));
16459566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rootNodes, leafNodes));
16469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0));
16476c1ef331SVaclav Hapla   if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF));
1648f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1649f5bf2dbfSMichael Lange }
1650f5bf2dbfSMichael Lange 
165115078cd4SMichael Lange /*@C
165215078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
165315078cd4SMichael Lange 
1654d083f849SBarry Smith   Collective on dm
165583655b49SVáclav Hapla 
1656064ec1f3Sprj-   Input Parameters:
165715078cd4SMichael Lange + dm       - The source DMPlex object
1658d8d19677SJose E. Roman - sf       - The star forest communication context describing the migration pattern
165915078cd4SMichael Lange 
166015078cd4SMichael Lange   Output Parameter:
1661d8d19677SJose E. Roman . targetDM - The target DMPlex object
166215078cd4SMichael Lange 
1663b9f40539SMichael Lange   Level: intermediate
166415078cd4SMichael Lange 
1665db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
166615078cd4SMichael Lange @*/
1667b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
166815078cd4SMichael Lange {
1669b9f40539SMichael Lange   MPI_Comm               comm;
1670cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1671b9f40539SMichael Lange   PetscSF                sfPoint;
167215078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1673ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
167415078cd4SMichael Lange 
167515078cd4SMichael Lange   PetscFunctionBegin;
167615078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16779566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0));
16789566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject) dm, &comm));
16799566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16809566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(targetDM, dim));
16819566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
16829566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(targetDM, cdim));
168315078cd4SMichael Lange 
1684bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
16859566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
16869566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL));
1687bfb0467fSMichael Lange   if (nroots >= 0) {
1688b9f40539SMichael Lange     IS        isOriginal;
1689ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1690ac04eaf7SToby Isaac     PetscInt  *numbering_orig, *numbering_new;
1691367003a6SStefano Zampini 
1692b9f40539SMichael Lange     /* Get the original point numbering */
16939566063dSJacob Faibussowitsch     PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal));
16949566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal));
16959566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size));
16969566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig));
1697b9f40539SMichael Lange     /* Convert to positive global numbers */
1698b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1699b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
17009566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL));
17019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &numbering_new));
17029566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE));
17039566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new,MPI_REPLACE));
17049566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration));
17059566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig));
17069566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isOriginal));
170715078cd4SMichael Lange   } else {
1708bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
17099566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration));
171015078cd4SMichael Lange   }
1711a5a902f7SVaclav Hapla   PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration"));
1712a5a902f7SVaclav Hapla   PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view"));
171315078cd4SMichael Lange   /* Migrate DM data to target DM */
17149566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM));
17159566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeLabels(dm, sf, targetDM));
17169566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM));
17179566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM));
17189566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogOriginal));
17199566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogMigration));
17209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0));
172115078cd4SMichael Lange   PetscFunctionReturn(0);
172215078cd4SMichael Lange }
172315078cd4SMichael Lange 
17243b8f15a2SMatthew G. Knepley /*@C
172570034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
172670034214SMatthew G. Knepley 
1727d083f849SBarry Smith   Collective on dm
172870034214SMatthew G. Knepley 
1729064ec1f3Sprj-   Input Parameters:
173070034214SMatthew G. Knepley + dm  - The original DMPlex object
173170034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
173270034214SMatthew G. Knepley 
1733064ec1f3Sprj-   Output Parameters:
1734f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1735f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
173670034214SMatthew G. Knepley 
1737f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
173870034214SMatthew G. Knepley 
1739b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
174070034214SMatthew G. Knepley   representation on the mesh.
174170034214SMatthew G. Knepley 
174270034214SMatthew G. Knepley   Level: intermediate
174370034214SMatthew G. Knepley 
1744db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()`
174570034214SMatthew G. Knepley @*/
174680cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
174770034214SMatthew G. Knepley {
174870034214SMatthew G. Knepley   MPI_Comm               comm;
174915078cd4SMichael Lange   PetscPartitioner       partitioner;
1750f8987ae8SMichael Lange   IS                     cellPart;
1751f8987ae8SMichael Lange   PetscSection           cellPartSection;
1752cf86098cSMatthew G. Knepley   DM                     dmCoord;
1753f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
1754874ddda9SLisandro Dalcin   PetscSF                sfMigration, sfStratified, sfPoint;
175598ba2d7fSLawrence Mitchell   PetscBool              flg, balance;
1756874ddda9SLisandro Dalcin   PetscMPIInt            rank, size;
175770034214SMatthew G. Knepley 
175870034214SMatthew G. Knepley   PetscFunctionBegin;
175970034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1760d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1761d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf,3);
1762d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel,4);
176370034214SMatthew G. Knepley 
17640c86c063SLisandro Dalcin   if (sf) *sf = NULL;
17650c86c063SLisandro Dalcin   *dmParallel = NULL;
17669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
17679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
17689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17690c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
177070034214SMatthew G. Knepley 
17719566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0));
177215078cd4SMichael Lange   /* Create cell partition */
17739566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0));
17749566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &cellPartSection));
17759566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm, &partitioner));
17769566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart));
17779566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0));
1778f8987ae8SMichael Lange   {
1779f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1780825f8a23SLisandro Dalcin     IS             is;
1781825f8a23SLisandro Dalcin     PetscHSetI     ht;
1782f8987ae8SMichael Lange     const PetscInt *points;
17838e330a33SStefano Zampini     PetscInt       *iranks;
17848e330a33SStefano Zampini     PetscInt       pStart, pEnd, proc, npoints, poff = 0, nranks;
1785825f8a23SLisandro Dalcin 
17869566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition));
1787825f8a23SLisandro Dalcin     /* Preallocate strata */
17889566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
17899566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1790825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
17919566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
17929566063dSJacob Faibussowitsch       if (npoints) PetscCall(PetscHSetIAdd(ht, proc));
1793825f8a23SLisandro Dalcin     }
17949566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(ht, &nranks));
17959566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nranks, &iranks));
17969566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetElems(ht, &poff, iranks));
17979566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
17989566063dSJacob Faibussowitsch     PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks));
17999566063dSJacob Faibussowitsch     PetscCall(PetscFree(iranks));
1800825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
18019566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(cellPart, &points));
18029566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1803f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
18049566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
1805825f8a23SLisandro Dalcin       if (!npoints) continue;
18069566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff));
18079566063dSJacob Faibussowitsch       PetscCall(DMPlexClosurePoints_Private(dm, npoints, points+poff, &is));
18089566063dSJacob Faibussowitsch       PetscCall(DMLabelSetStratumIS(lblPartition, proc, is));
18099566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&is));
1810f8987ae8SMichael Lange     }
18119566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(cellPart, &points));
1812f8987ae8SMichael Lange   }
18139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0));
18146e203dd9SStefano Zampini 
18159566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration));
18169566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration));
18179566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration));
18189566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified));
18199566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfMigration));
182043f7d02bSMichael Lange   sfMigration = sfStratified;
18219566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sfMigration));
18229566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0));
18239566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg));
182470034214SMatthew G. Knepley   if (flg) {
18259566063dSJacob Faibussowitsch     PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm)));
18269566063dSJacob Faibussowitsch     PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm)));
182770034214SMatthew G. Knepley   }
1828f8987ae8SMichael Lange 
182915078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
18309566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmParallel));
18319566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh"));
18329566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel));
183370034214SMatthew G. Knepley 
1834a157612eSMichael Lange   /* Build the point SF without overlap */
18359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
18369566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance));
18379566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint));
18389566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmParallel, sfPoint));
18399566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord));
18409566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
18419566063dSJacob Faibussowitsch   if (flg) PetscCall(PetscSFView(sfPoint, NULL));
184270034214SMatthew G. Knepley 
1843a157612eSMichael Lange   if (overlap > 0) {
184415078cd4SMichael Lange     DM                 dmOverlap;
184557f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
184657f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
184757f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
184815078cd4SMichael Lange     const PetscSFNode *oldRemote;
184915078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1850524e35f8SStefano Zampini 
1851a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
18529566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap));
18539566063dSJacob Faibussowitsch     PetscCall(DMDestroy(dmParallel));
1854a157612eSMichael Lange     *dmParallel = dmOverlap;
1855c389ea9fSToby Isaac     if (flg) {
18569566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n"));
18579566063dSJacob Faibussowitsch       PetscCall(PetscSFView(sfOverlap, NULL));
1858c389ea9fSToby Isaac     }
185943331d4aSMichael Lange 
1860f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
18619566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote));
18629566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL));
18639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &newRemote));
186457f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
186557f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
186657f290daSMatthew G. Knepley     if (oldLeaves) {
186773e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
18689566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(noldleaves, &permRemote));
186957f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
187057f290daSMatthew G. Knepley       oldRemote = permRemote;
187157f290daSMatthew G. Knepley     }
18729566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE));
18739566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote,MPI_REPLACE));
18749566063dSJacob Faibussowitsch     if (oldLeaves) PetscCall(PetscFree(oldRemote));
18759566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, &sfOverlapPoint));
18769566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER));
18779566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfOverlap));
18789566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfMigration));
187915078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1880c389ea9fSToby Isaac   }
1881bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
18829566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblPartition));
18839566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblMigration));
18849566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&cellPartSection));
18859566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellPart));
188645480ffeSMatthew G. Knepley   /* Copy discretization */
18879566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *dmParallel));
188866fe0bfeSMatthew G. Knepley   /* Create sfNatural */
188966fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
189066fe0bfeSMatthew G. Knepley     PetscSection section;
189166fe0bfeSMatthew G. Knepley 
18929566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
18939566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural));
18949566063dSJacob Faibussowitsch     PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE));
189566fe0bfeSMatthew G. Knepley   }
18965de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel));
1897721cbd76SMatthew G. Knepley   /* Cleanup */
1898f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
18999566063dSJacob Faibussowitsch   else    PetscCall(PetscSFDestroy(&sfMigration));
19009566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
19019566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0));
190270034214SMatthew G. Knepley   PetscFunctionReturn(0);
190370034214SMatthew G. Knepley }
1904a157612eSMichael Lange 
1905a157612eSMichael Lange /*@C
190624cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1907a157612eSMichael Lange 
1908d083f849SBarry Smith   Collective on dm
1909a157612eSMichael Lange 
1910064ec1f3Sprj-   Input Parameters:
1911064ec1f3Sprj- + dm  - The non-overlapping distributed DMPlex object
191257fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1913a157612eSMichael Lange 
1914064ec1f3Sprj-   Output Parameters:
1915a157612eSMichael Lange + sf - The PetscSF used for point distribution
1916a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1917a157612eSMichael Lange 
1918dccdeccaSVaclav Hapla   Notes:
1919dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1920a157612eSMichael Lange 
1921b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1922a157612eSMichael Lange   representation on the mesh.
1923a157612eSMichael Lange 
1924*c506a872SMatthew G. Knepley   Options Database Keys:
1925*c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names
1926*c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...>   - List of overlap label values
1927*c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name>     - Label used to exclude points from overlap
1928*c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int>      - Label value used to exclude points from overlap
1929*c506a872SMatthew G. Knepley 
1930dccdeccaSVaclav Hapla   Level: advanced
1931a157612eSMichael Lange 
1932db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()`
1933a157612eSMichael Lange @*/
1934b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1935a157612eSMichael Lange {
1936*c506a872SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *) dm->data;
1937a157612eSMichael Lange   MPI_Comm     comm;
19383567eaeeSMatthew G. Knepley   PetscMPIInt  size, rank;
1939a157612eSMichael Lange   PetscSection rootSection, leafSection;
1940a157612eSMichael Lange   IS           rootrank, leafrank;
1941cf86098cSMatthew G. Knepley   DM           dmCoord;
1942a9f1d5b2SMichael Lange   DMLabel      lblOverlap;
1943f5bf2dbfSMichael Lange   PetscSF      sfOverlap, sfStratified, sfPoint;
1944a157612eSMichael Lange 
1945a157612eSMichael Lange   PetscFunctionBegin;
1946a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
194757fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1948a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1949a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1950a157612eSMichael Lange 
19510c86c063SLisandro Dalcin   if (sf) *sf = NULL;
19520c86c063SLisandro Dalcin   *dmOverlap  = NULL;
19539566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
19549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
19559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19560c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1957*c506a872SMatthew G. Knepley   {
1958*c506a872SMatthew G. Knepley     // We need to get options for the _already_distributed mesh, so it must be done here
1959*c506a872SMatthew G. Knepley     PetscInt    overlap;
1960*c506a872SMatthew G. Knepley     const char *prefix;
1961*c506a872SMatthew G. Knepley     char        oldPrefix[PETSC_MAX_PATH_LEN];
1962a157612eSMichael Lange 
1963*c506a872SMatthew G. Knepley     oldPrefix[0] = '\0';
1964*c506a872SMatthew G. Knepley     PetscCall(PetscObjectGetOptionsPrefix((PetscObject) dm, &prefix));
1965*c506a872SMatthew G. Knepley     PetscCall(PetscStrcpy(oldPrefix, prefix));
1966*c506a872SMatthew G. Knepley     PetscCall(PetscObjectAppendOptionsPrefix((PetscObject) dm, "dist_"));
1967*c506a872SMatthew G. Knepley     PetscCall(DMPlexGetOverlap(dm, &overlap));
1968*c506a872SMatthew G. Knepley     PetscObjectOptionsBegin((PetscObject) dm);
1969*c506a872SMatthew G. Knepley     PetscCall(DMSetFromOptions_Overlap_Plex(PetscOptionsObject, dm, &overlap));
1970*c506a872SMatthew G. Knepley     PetscOptionsEnd();
1971*c506a872SMatthew G. Knepley     PetscCall(PetscObjectSetOptionsPrefix((PetscObject) dm, oldPrefix[0] == '\0' ? NULL : oldPrefix));
1972*c506a872SMatthew G. Knepley   }
19739566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
1974a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
19759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0));
19769566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &rootSection));
19779566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &leafSection));
19789566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank));
1979*c506a872SMatthew G. Knepley   if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
1980*c506a872SMatthew G. Knepley   else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
1981a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
19829566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap));
19839566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified));
19849566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfOverlap));
1985a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
19869566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF"));
19879566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sfOverlap));
1988a9f1d5b2SMichael Lange 
19899566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&rootSection));
19909566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&leafSection));
19919566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&rootrank));
19929566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&leafrank));
19939566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0));
1994a157612eSMichael Lange 
1995a157612eSMichael Lange   /* Build the overlapping DM */
19969566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmOverlap));
19979566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh"));
19989566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap));
1999cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
200060667520SVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap));
2001f5bf2dbfSMichael Lange   /* Build the new point SF */
20029566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint));
20039566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmOverlap, sfPoint));
20049566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord));
20059566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
20069566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
2007a157612eSMichael Lange   /* Cleanup overlap partition */
20089566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblOverlap));
2009a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
20109566063dSJacob Faibussowitsch   else    PetscCall(PetscSFDestroy(&sfOverlap));
20119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
2012a157612eSMichael Lange   PetscFunctionReturn(0);
2013a157612eSMichael Lange }
20146462276dSToby Isaac 
2015cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap)
2016cb54e036SVaclav Hapla {
2017cb54e036SVaclav Hapla   DM_Plex        *mesh  = (DM_Plex*) dm->data;
2018cb54e036SVaclav Hapla 
2019cb54e036SVaclav Hapla   PetscFunctionBegin;
2020cb54e036SVaclav Hapla   *overlap = mesh->overlap;
2021cb54e036SVaclav Hapla   PetscFunctionReturn(0);
2022cb54e036SVaclav Hapla }
2023cb54e036SVaclav Hapla 
202460667520SVaclav Hapla PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap)
202560667520SVaclav Hapla {
202660667520SVaclav Hapla   DM_Plex        *mesh=NULL;
202760667520SVaclav Hapla   DM_Plex        *meshSrc=NULL;
202860667520SVaclav Hapla 
202960667520SVaclav Hapla   PetscFunctionBegin;
203060667520SVaclav Hapla   PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX);
203160667520SVaclav Hapla   mesh = (DM_Plex*) dm->data;
203260667520SVaclav Hapla   mesh->overlap = overlap;
203360667520SVaclav Hapla   if (dmSrc) {
203460667520SVaclav Hapla     PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX);
203560667520SVaclav Hapla     meshSrc = (DM_Plex*) dmSrc->data;
203660667520SVaclav Hapla     mesh->overlap += meshSrc->overlap;
203760667520SVaclav Hapla   }
203860667520SVaclav Hapla   PetscFunctionReturn(0);
203960667520SVaclav Hapla }
204060667520SVaclav Hapla 
2041cb54e036SVaclav Hapla /*@
2042*c506a872SMatthew G. Knepley   DMPlexGetOverlap - Get the width of the cell overlap
2043cb54e036SVaclav Hapla 
2044cb54e036SVaclav Hapla   Not collective
2045cb54e036SVaclav Hapla 
2046cb54e036SVaclav Hapla   Input Parameter:
2047cb54e036SVaclav Hapla . dm   - The DM
2048cb54e036SVaclav Hapla 
2049064ec1f3Sprj-   Output Parameter:
2050*c506a872SMatthew G. Knepley . overlap - the width of the cell overlap
2051cb54e036SVaclav Hapla 
2052cb54e036SVaclav Hapla   Level: intermediate
2053cb54e036SVaclav Hapla 
2054*c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()`
2055cb54e036SVaclav Hapla @*/
2056cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap)
2057cb54e036SVaclav Hapla {
2058cb54e036SVaclav Hapla   PetscFunctionBegin;
2059cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2060*c506a872SMatthew G. Knepley   PetscValidIntPointer(overlap, 2);
2061cac4c232SBarry Smith   PetscUseMethod(dm, "DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));
2062cb54e036SVaclav Hapla   PetscFunctionReturn(0);
2063cb54e036SVaclav Hapla }
2064cb54e036SVaclav Hapla 
2065*c506a872SMatthew G. Knepley /*@
2066*c506a872SMatthew G. Knepley   DMPlexSetOverlap - Set the width of the cell overlap
2067*c506a872SMatthew G. Knepley 
2068*c506a872SMatthew G. Knepley   Logically collective
2069*c506a872SMatthew G. Knepley 
2070*c506a872SMatthew G. Knepley   Input Parameters:
2071*c506a872SMatthew G. Knepley + dm      - The DM
2072*c506a872SMatthew G. Knepley . dmSrc   - The DM that produced this one, or NULL
2073*c506a872SMatthew G. Knepley - overlap - the width of the cell overlap
2074*c506a872SMatthew G. Knepley 
2075*c506a872SMatthew G. Knepley   Note:
2076*c506a872SMatthew G. Knepley   The overlap from dmSrc is added to dm
2077*c506a872SMatthew G. Knepley 
2078*c506a872SMatthew G. Knepley   Level: intermediate
2079*c506a872SMatthew G. Knepley 
2080*c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()`
2081*c506a872SMatthew G. Knepley @*/
2082*c506a872SMatthew G. Knepley PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap)
2083*c506a872SMatthew G. Knepley {
2084*c506a872SMatthew G. Knepley   PetscFunctionBegin;
2085*c506a872SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2086*c506a872SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 3);
2087*c506a872SMatthew G. Knepley   PetscTryMethod(dm, "DMPlexSetOverlap_C",(DM,DM,PetscInt),(dm,dmSrc,overlap));
2088*c506a872SMatthew G. Knepley   PetscFunctionReturn(0);
2089*c506a872SMatthew G. Knepley }
2090*c506a872SMatthew G. Knepley 
2091e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist)
2092e600fa54SMatthew G. Knepley {
2093e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
2094e600fa54SMatthew G. Knepley 
2095e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2096e600fa54SMatthew G. Knepley   mesh->distDefault = dist;
2097e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2098e600fa54SMatthew G. Knepley }
2099e600fa54SMatthew G. Knepley 
2100e600fa54SMatthew G. Knepley /*@
2101e600fa54SMatthew G. Knepley   DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default
2102e600fa54SMatthew G. Knepley 
2103e600fa54SMatthew G. Knepley   Logically collective
2104e600fa54SMatthew G. Knepley 
2105e600fa54SMatthew G. Knepley   Input Parameters:
2106e600fa54SMatthew G. Knepley + dm   - The DM
2107e600fa54SMatthew G. Knepley - dist - Flag for distribution
2108e600fa54SMatthew G. Knepley 
2109e600fa54SMatthew G. Knepley   Level: intermediate
2110e600fa54SMatthew G. Knepley 
21119e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()`
2112e600fa54SMatthew G. Knepley @*/
2113e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist)
2114e600fa54SMatthew G. Knepley {
2115e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2116e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2117e600fa54SMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, dist, 2);
2118cac4c232SBarry Smith   PetscTryMethod(dm,"DMPlexDistributeSetDefault_C",(DM,PetscBool),(dm,dist));
2119e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2120e600fa54SMatthew G. Knepley }
2121e600fa54SMatthew G. Knepley 
2122e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist)
2123e600fa54SMatthew G. Knepley {
2124e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
2125e600fa54SMatthew G. Knepley 
2126e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2127e600fa54SMatthew G. Knepley   *dist = mesh->distDefault;
2128e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2129e600fa54SMatthew G. Knepley }
2130e600fa54SMatthew G. Knepley 
2131e600fa54SMatthew G. Knepley /*@
2132e600fa54SMatthew G. Knepley   DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default
2133e600fa54SMatthew G. Knepley 
2134e600fa54SMatthew G. Knepley   Not collective
2135e600fa54SMatthew G. Knepley 
2136e600fa54SMatthew G. Knepley   Input Parameter:
2137e600fa54SMatthew G. Knepley . dm   - The DM
2138e600fa54SMatthew G. Knepley 
2139e600fa54SMatthew G. Knepley   Output Parameter:
2140e600fa54SMatthew G. Knepley . dist - Flag for distribution
2141e600fa54SMatthew G. Knepley 
2142e600fa54SMatthew G. Knepley   Level: intermediate
2143e600fa54SMatthew G. Knepley 
21449e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()`
2145e600fa54SMatthew G. Knepley @*/
2146e600fa54SMatthew G. Knepley PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist)
2147e600fa54SMatthew G. Knepley {
2148e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2149e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2150e600fa54SMatthew G. Knepley   PetscValidBoolPointer(dist, 2);
2151cac4c232SBarry Smith   PetscUseMethod(dm,"DMPlexDistributeGetDefault_C",(DM,PetscBool*),(dm,dist));
2152e600fa54SMatthew G. Knepley   PetscFunctionReturn(0);
2153e600fa54SMatthew G. Knepley }
2154e600fa54SMatthew G. Knepley 
21556462276dSToby Isaac /*@C
21566462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
21576462276dSToby Isaac   root process of the original's communicator.
21586462276dSToby Isaac 
2159d083f849SBarry Smith   Collective on dm
216083655b49SVáclav Hapla 
2161064ec1f3Sprj-   Input Parameter:
21626462276dSToby Isaac . dm - the original DMPlex object
21636462276dSToby Isaac 
21646462276dSToby Isaac   Output Parameters:
2165a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2166a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
21676462276dSToby Isaac 
21686462276dSToby Isaac   Level: intermediate
21696462276dSToby Isaac 
2170db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()`
21716462276dSToby Isaac @*/
2172a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
21736462276dSToby Isaac {
21746462276dSToby Isaac   MPI_Comm       comm;
21756462276dSToby Isaac   PetscMPIInt    size;
21766462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
21776462276dSToby Isaac 
21786462276dSToby Isaac   PetscFunctionBegin;
21796462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
2180064a246eSJacob Faibussowitsch   PetscValidPointer(gatherMesh,3);
21810c86c063SLisandro Dalcin   *gatherMesh = NULL;
2182a13df41bSStefano Zampini   if (sf) *sf = NULL;
21836462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
21849566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
21856462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
21869566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm,&oldPart));
21879566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldPart));
21889566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerCreate(comm,&gatherPart));
21899566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER));
21909566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm,gatherPart));
21919566063dSJacob Faibussowitsch   PetscCall(DMPlexDistribute(dm,0,sf,gatherMesh));
2192a13df41bSStefano Zampini 
21939566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm,oldPart));
21949566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&gatherPart));
21959566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&oldPart));
21966462276dSToby Isaac   PetscFunctionReturn(0);
21976462276dSToby Isaac }
21986462276dSToby Isaac 
21996462276dSToby Isaac /*@C
22006462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
22016462276dSToby Isaac 
2202d083f849SBarry Smith   Collective on dm
220383655b49SVáclav Hapla 
2204064ec1f3Sprj-   Input Parameter:
22056462276dSToby Isaac . dm - the original DMPlex object
22066462276dSToby Isaac 
22076462276dSToby Isaac   Output Parameters:
2208a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2209a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
22106462276dSToby Isaac 
22116462276dSToby Isaac   Level: intermediate
22126462276dSToby Isaac 
2213db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()`
22146462276dSToby Isaac @*/
2215a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
22166462276dSToby Isaac {
22176462276dSToby Isaac   MPI_Comm       comm;
22186462276dSToby Isaac   PetscMPIInt    size, rank;
22196462276dSToby Isaac   PetscInt       pStart, pEnd, p;
22206462276dSToby Isaac   PetscInt       numPoints = -1;
2221a13df41bSStefano Zampini   PetscSF        migrationSF, sfPoint, gatherSF;
22226462276dSToby Isaac   DM             gatherDM, dmCoord;
22236462276dSToby Isaac   PetscSFNode    *points;
22246462276dSToby Isaac 
22256462276dSToby Isaac   PetscFunctionBegin;
22266462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
2227064a246eSJacob Faibussowitsch   PetscValidPointer(redundantMesh,3);
22280c86c063SLisandro Dalcin   *redundantMesh = NULL;
22296462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
22309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
223168dbc166SMatthew G. Knepley   if (size == 1) {
22329566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject) dm));
223368dbc166SMatthew G. Knepley     *redundantMesh = dm;
2234a13df41bSStefano Zampini     if (sf) *sf = NULL;
223568dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
223668dbc166SMatthew G. Knepley   }
22379566063dSJacob Faibussowitsch   PetscCall(DMPlexGetGatherDM(dm,&gatherSF,&gatherDM));
22386462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
22399566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
22409566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(gatherDM,&pStart,&pEnd));
22416462276dSToby Isaac   numPoints = pEnd - pStart;
22429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numPoints,1,MPIU_INT,0,comm));
22439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numPoints,&points));
22449566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm,&migrationSF));
22456462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
22466462276dSToby Isaac     points[p].index = p;
22476462276dSToby Isaac     points[p].rank  = 0;
22486462276dSToby Isaac   }
22499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER));
22509566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, redundantMesh));
22519566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh"));
22529566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh));
22532e28cf0cSVaclav Hapla   /* This is to express that all point are in overlap */
22542e28cf0cSVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT));
22559566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint));
22569566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*redundantMesh, sfPoint));
22579566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord));
22589566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
22599566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
2260a13df41bSStefano Zampini   if (sf) {
2261a13df41bSStefano Zampini     PetscSF tsf;
2262a13df41bSStefano Zampini 
22639566063dSJacob Faibussowitsch     PetscCall(PetscSFCompose(gatherSF,migrationSF,&tsf));
22649566063dSJacob Faibussowitsch     PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf));
22659566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&tsf));
2266a13df41bSStefano Zampini   }
22679566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&migrationSF));
22689566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&gatherSF));
22699566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&gatherDM));
22709566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *redundantMesh));
22715de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh));
22726462276dSToby Isaac   PetscFunctionReturn(0);
22736462276dSToby Isaac }
22745fa78c88SVaclav Hapla 
22755fa78c88SVaclav Hapla /*@
22765fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
22775fa78c88SVaclav Hapla 
22785fa78c88SVaclav Hapla   Collective
22795fa78c88SVaclav Hapla 
22805fa78c88SVaclav Hapla   Input Parameter:
22815fa78c88SVaclav Hapla . dm      - The DM object
22825fa78c88SVaclav Hapla 
22835fa78c88SVaclav Hapla   Output Parameter:
22845fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
22855fa78c88SVaclav Hapla 
22865fa78c88SVaclav Hapla   Level: intermediate
22875fa78c88SVaclav Hapla 
22885fa78c88SVaclav Hapla   Notes:
22895fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
22905fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
22915fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
22925fa78c88SVaclav Hapla 
2293db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()`
22945fa78c88SVaclav Hapla @*/
22955fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed)
22965fa78c88SVaclav Hapla {
22975fa78c88SVaclav Hapla   PetscInt          pStart, pEnd, count;
22985fa78c88SVaclav Hapla   MPI_Comm          comm;
229935d70e31SStefano Zampini   PetscMPIInt       size;
23005fa78c88SVaclav Hapla 
23015fa78c88SVaclav Hapla   PetscFunctionBegin;
23025fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2303dadcf809SJacob Faibussowitsch   PetscValidBoolPointer(distributed,2);
23049566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm,&comm));
23059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
230635d70e31SStefano Zampini   if (size == 1) { *distributed = PETSC_FALSE; PetscFunctionReturn(0); }
23079566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
230835d70e31SStefano Zampini   count = (pEnd - pStart) > 0 ? 1 : 0;
23099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm));
23105fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
23115fa78c88SVaclav Hapla   PetscFunctionReturn(0);
23125fa78c88SVaclav Hapla }
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