xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision c58f1c226d931c4a5e770c4500cd78d45092fdba)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2*c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
470034214SMatthew G. Knepley #undef __FUNCT__
570034214SMatthew G. Knepley #define __FUNCT__ "DMPlexSetAdjacencyUseCone"
670034214SMatthew G. Knepley /*@
770034214SMatthew G. Knepley   DMPlexSetAdjacencyUseCone - Define adjacency in the mesh using either the cone or the support first
870034214SMatthew G. Knepley 
970034214SMatthew G. Knepley   Input Parameters:
1070034214SMatthew G. Knepley + dm      - The DM object
1170034214SMatthew G. Knepley - useCone - Flag to use the cone first
1270034214SMatthew G. Knepley 
1370034214SMatthew G. Knepley   Level: intermediate
1470034214SMatthew G. Knepley 
1570034214SMatthew G. Knepley   Notes:
1670034214SMatthew G. Knepley $     FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
174b6b44bdSMatthew G. Knepley $     FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
1870034214SMatthew G. Knepley $     FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
1970034214SMatthew G. Knepley 
2070034214SMatthew G. Knepley .seealso: DMPlexGetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexGetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator()
2170034214SMatthew G. Knepley @*/
2270034214SMatthew G. Knepley PetscErrorCode DMPlexSetAdjacencyUseCone(DM dm, PetscBool useCone)
2370034214SMatthew G. Knepley {
2470034214SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
2570034214SMatthew G. Knepley 
2670034214SMatthew G. Knepley   PetscFunctionBegin;
2770034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2870034214SMatthew G. Knepley   mesh->useCone = useCone;
2970034214SMatthew G. Knepley   PetscFunctionReturn(0);
3070034214SMatthew G. Knepley }
3170034214SMatthew G. Knepley 
3270034214SMatthew G. Knepley #undef __FUNCT__
3370034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacencyUseCone"
3470034214SMatthew G. Knepley /*@
3570034214SMatthew G. Knepley   DMPlexGetAdjacencyUseCone - Query whether adjacency in the mesh uses the cone or the support first
3670034214SMatthew G. Knepley 
3770034214SMatthew G. Knepley   Input Parameter:
3870034214SMatthew G. Knepley . dm      - The DM object
3970034214SMatthew G. Knepley 
4070034214SMatthew G. Knepley   Output Parameter:
4170034214SMatthew G. Knepley . useCone - Flag to use the cone first
4270034214SMatthew G. Knepley 
4370034214SMatthew G. Knepley   Level: intermediate
4470034214SMatthew G. Knepley 
4570034214SMatthew G. Knepley   Notes:
4670034214SMatthew G. Knepley $     FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
474b6b44bdSMatthew G. Knepley $     FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
4870034214SMatthew G. Knepley $     FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
4970034214SMatthew G. Knepley 
5070034214SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexGetAdjacencyUseClosure(), DMPlexDistribute(), DMPlexPreallocateOperator()
5170034214SMatthew G. Knepley @*/
5270034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacencyUseCone(DM dm, PetscBool *useCone)
5370034214SMatthew G. Knepley {
5470034214SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
5570034214SMatthew G. Knepley 
5670034214SMatthew G. Knepley   PetscFunctionBegin;
5770034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5870034214SMatthew G. Knepley   PetscValidIntPointer(useCone, 2);
5970034214SMatthew G. Knepley   *useCone = mesh->useCone;
6070034214SMatthew G. Knepley   PetscFunctionReturn(0);
6170034214SMatthew G. Knepley }
6270034214SMatthew G. Knepley 
6370034214SMatthew G. Knepley #undef __FUNCT__
6470034214SMatthew G. Knepley #define __FUNCT__ "DMPlexSetAdjacencyUseClosure"
6570034214SMatthew G. Knepley /*@
6670034214SMatthew G. Knepley   DMPlexSetAdjacencyUseClosure - Define adjacency in the mesh using the transitive closure
6770034214SMatthew G. Knepley 
6870034214SMatthew G. Knepley   Input Parameters:
6970034214SMatthew G. Knepley + dm      - The DM object
7070034214SMatthew G. Knepley - useClosure - Flag to use the closure
7170034214SMatthew G. Knepley 
7270034214SMatthew G. Knepley   Level: intermediate
7370034214SMatthew G. Knepley 
7470034214SMatthew G. Knepley   Notes:
7570034214SMatthew G. Knepley $     FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
764b6b44bdSMatthew G. Knepley $     FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
7770034214SMatthew G. Knepley $     FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
7870034214SMatthew G. Knepley 
7970034214SMatthew G. Knepley .seealso: DMPlexGetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator()
8070034214SMatthew G. Knepley @*/
8170034214SMatthew G. Knepley PetscErrorCode DMPlexSetAdjacencyUseClosure(DM dm, PetscBool useClosure)
8270034214SMatthew G. Knepley {
8370034214SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
8470034214SMatthew G. Knepley 
8570034214SMatthew G. Knepley   PetscFunctionBegin;
8670034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8770034214SMatthew G. Knepley   mesh->useClosure = useClosure;
8870034214SMatthew G. Knepley   PetscFunctionReturn(0);
8970034214SMatthew G. Knepley }
9070034214SMatthew G. Knepley 
9170034214SMatthew G. Knepley #undef __FUNCT__
9270034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacencyUseClosure"
9370034214SMatthew G. Knepley /*@
9470034214SMatthew G. Knepley   DMPlexGetAdjacencyUseClosure - Query whether adjacency in the mesh uses the transitive closure
9570034214SMatthew G. Knepley 
9670034214SMatthew G. Knepley   Input Parameter:
9770034214SMatthew G. Knepley . dm      - The DM object
9870034214SMatthew G. Knepley 
9970034214SMatthew G. Knepley   Output Parameter:
10070034214SMatthew G. Knepley . useClosure - Flag to use the closure
10170034214SMatthew G. Knepley 
10270034214SMatthew G. Knepley   Level: intermediate
10370034214SMatthew G. Knepley 
10470034214SMatthew G. Knepley   Notes:
10570034214SMatthew G. Knepley $     FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
1064b6b44bdSMatthew G. Knepley $     FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
10770034214SMatthew G. Knepley $     FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
10870034214SMatthew G. Knepley 
10970034214SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator()
11070034214SMatthew G. Knepley @*/
11170034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacencyUseClosure(DM dm, PetscBool *useClosure)
11270034214SMatthew G. Knepley {
11370034214SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *) dm->data;
11470034214SMatthew G. Knepley 
11570034214SMatthew G. Knepley   PetscFunctionBegin;
11670034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11770034214SMatthew G. Knepley   PetscValidIntPointer(useClosure, 2);
11870034214SMatthew G. Knepley   *useClosure = mesh->useClosure;
11970034214SMatthew G. Knepley   PetscFunctionReturn(0);
12070034214SMatthew G. Knepley }
12170034214SMatthew G. Knepley 
12270034214SMatthew G. Knepley #undef __FUNCT__
123a17985deSToby Isaac #define __FUNCT__ "DMPlexSetAdjacencyUseAnchors"
1248b0b4c70SToby Isaac /*@
125a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
1268b0b4c70SToby Isaac 
1278b0b4c70SToby Isaac   Input Parameters:
1288b0b4c70SToby Isaac + dm      - The DM object
1295b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
1308b0b4c70SToby Isaac 
1318b0b4c70SToby Isaac   Level: intermediate
1328b0b4c70SToby Isaac 
133a17985deSToby Isaac .seealso: DMPlexGetAdjacencyUseClosure(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
1348b0b4c70SToby Isaac @*/
1355b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
1368b0b4c70SToby Isaac {
1378b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
1388b0b4c70SToby Isaac 
1398b0b4c70SToby Isaac   PetscFunctionBegin;
1408b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1415b317d89SToby Isaac   mesh->useAnchors = useAnchors;
1428b0b4c70SToby Isaac   PetscFunctionReturn(0);
1438b0b4c70SToby Isaac }
1448b0b4c70SToby Isaac 
1458b0b4c70SToby Isaac #undef __FUNCT__
146a17985deSToby Isaac #define __FUNCT__ "DMPlexGetAdjacencyUseAnchors"
1478b0b4c70SToby Isaac /*@
148a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
1498b0b4c70SToby Isaac 
1508b0b4c70SToby Isaac   Input Parameter:
1518b0b4c70SToby Isaac . dm      - The DM object
1528b0b4c70SToby Isaac 
1538b0b4c70SToby Isaac   Output Parameter:
1545b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
1558b0b4c70SToby Isaac 
1568b0b4c70SToby Isaac   Level: intermediate
1578b0b4c70SToby Isaac 
158a17985deSToby Isaac .seealso: DMPlexSetAdjacencyUseAnchors(), DMPlexSetAdjacencyUseCone(), DMPlexGetAdjacencyUseCone(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
1598b0b4c70SToby Isaac @*/
1605b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
1618b0b4c70SToby Isaac {
1628b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
1638b0b4c70SToby Isaac 
1648b0b4c70SToby Isaac   PetscFunctionBegin;
1658b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1665b317d89SToby Isaac   PetscValidIntPointer(useAnchors, 2);
1675b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
1688b0b4c70SToby Isaac   PetscFunctionReturn(0);
1698b0b4c70SToby Isaac }
1708b0b4c70SToby Isaac 
1718b0b4c70SToby Isaac #undef __FUNCT__
17270034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency_Cone_Internal"
17370034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
17470034214SMatthew G. Knepley {
17570034214SMatthew G. Knepley   const PetscInt *cone = NULL;
17670034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
17770034214SMatthew G. Knepley   PetscErrorCode  ierr;
17870034214SMatthew G. Knepley 
17970034214SMatthew G. Knepley   PetscFunctionBeginHot;
18070034214SMatthew G. Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
18170034214SMatthew G. Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
1824b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1834b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
18470034214SMatthew G. Knepley     const PetscInt *support = NULL;
18570034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
18670034214SMatthew G. Knepley 
1874b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr);
1884b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr);
18970034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
19070034214SMatthew G. Knepley       for (q = 0; q < numAdj || (adj[numAdj++] = support[s],0); ++q) {
19170034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
19270034214SMatthew G. Knepley       }
19370034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
19470034214SMatthew G. Knepley     }
19570034214SMatthew G. Knepley   }
19670034214SMatthew G. Knepley   *adjSize = numAdj;
19770034214SMatthew G. Knepley   PetscFunctionReturn(0);
19870034214SMatthew G. Knepley }
19970034214SMatthew G. Knepley 
20070034214SMatthew G. Knepley #undef __FUNCT__
20170034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency_Support_Internal"
20270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
20370034214SMatthew G. Knepley {
20470034214SMatthew G. Knepley   const PetscInt *support = NULL;
20570034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
20670034214SMatthew G. Knepley   PetscErrorCode  ierr;
20770034214SMatthew G. Knepley 
20870034214SMatthew G. Knepley   PetscFunctionBeginHot;
20970034214SMatthew G. Knepley   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
21070034214SMatthew G. Knepley   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
2114b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
2124b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
21370034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
21470034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
21570034214SMatthew G. Knepley 
2164b6b44bdSMatthew G. Knepley     ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr);
2174b6b44bdSMatthew G. Knepley     ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr);
21870034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
21970034214SMatthew G. Knepley       for (q = 0; q < numAdj || (adj[numAdj++] = cone[c],0); ++q) {
22070034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
22170034214SMatthew G. Knepley       }
22270034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
22370034214SMatthew G. Knepley     }
22470034214SMatthew G. Knepley   }
22570034214SMatthew G. Knepley   *adjSize = numAdj;
22670034214SMatthew G. Knepley   PetscFunctionReturn(0);
22770034214SMatthew G. Knepley }
22870034214SMatthew G. Knepley 
22970034214SMatthew G. Knepley #undef __FUNCT__
23070034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency_Transitive_Internal"
23170034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
23270034214SMatthew G. Knepley {
23370034214SMatthew G. Knepley   PetscInt      *star = NULL;
23470034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
23570034214SMatthew G. Knepley   PetscErrorCode ierr;
23670034214SMatthew G. Knepley 
23770034214SMatthew G. Knepley   PetscFunctionBeginHot;
23870034214SMatthew G. Knepley   ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
23970034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
24070034214SMatthew G. Knepley     const PetscInt *closure = NULL;
24170034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
24270034214SMatthew G. Knepley 
24370034214SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
24470034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
24570034214SMatthew G. Knepley       for (q = 0; q < numAdj || (adj[numAdj++] = closure[c],0); ++q) {
24670034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
24770034214SMatthew G. Knepley       }
24870034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
24970034214SMatthew G. Knepley     }
25070034214SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
25170034214SMatthew G. Knepley   }
25270034214SMatthew G. Knepley   ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
25370034214SMatthew G. Knepley   *adjSize = numAdj;
25470034214SMatthew G. Knepley   PetscFunctionReturn(0);
25570034214SMatthew G. Knepley }
25670034214SMatthew G. Knepley 
25770034214SMatthew G. Knepley #undef __FUNCT__
25870034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency_Internal"
2595b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
26070034214SMatthew G. Knepley {
26179bad331SMatthew G. Knepley   static PetscInt asiz = 0;
2628b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
2638b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
2648b0b4c70SToby Isaac   PetscInt maxAdjSize;
2658b0b4c70SToby Isaac   PetscSection aSec = NULL;
2668b0b4c70SToby Isaac   IS aIS = NULL;
2678b0b4c70SToby Isaac   const PetscInt *anchors;
26870034214SMatthew G. Knepley   PetscErrorCode  ierr;
26970034214SMatthew G. Knepley 
27070034214SMatthew G. Knepley   PetscFunctionBeginHot;
2715b317d89SToby Isaac   if (useAnchors) {
272a17985deSToby Isaac     ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr);
2738b0b4c70SToby Isaac     if (aSec) {
2748b0b4c70SToby Isaac       ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr);
27524c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
2768b0b4c70SToby Isaac       ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr);
2778b0b4c70SToby Isaac       ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr);
2788b0b4c70SToby Isaac     }
2798b0b4c70SToby Isaac   }
28079bad331SMatthew G. Knepley   if (!*adj) {
28124c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
28279bad331SMatthew G. Knepley 
28324c766afSToby Isaac     ierr  = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr);
28479bad331SMatthew G. Knepley     ierr  = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
28524c766afSToby Isaac     ierr  = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr);
28624c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
28724c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
28824c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2898b0b4c70SToby Isaac     asiz *= maxAnchors;
29024c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
29179bad331SMatthew G. Knepley     ierr  = PetscMalloc1(asiz,adj);CHKERRQ(ierr);
29279bad331SMatthew G. Knepley   }
29379bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2948b0b4c70SToby Isaac   maxAdjSize = *adjSize;
29570034214SMatthew G. Knepley   if (useTransitiveClosure) {
29679bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr);
29770034214SMatthew G. Knepley   } else if (useCone) {
29879bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
29970034214SMatthew G. Knepley   } else {
30079bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
30170034214SMatthew G. Knepley   }
3025b317d89SToby Isaac   if (useAnchors && aSec) {
3038b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
3048b0b4c70SToby Isaac     PetscInt numAdj = origSize;
3058b0b4c70SToby Isaac     PetscInt i = 0, j;
3068b0b4c70SToby Isaac     PetscInt *orig = *adj;
3078b0b4c70SToby Isaac 
3088b0b4c70SToby Isaac     while (i < origSize) {
3098b0b4c70SToby Isaac       PetscInt p = orig[i];
3108b0b4c70SToby Isaac       PetscInt aDof = 0;
3118b0b4c70SToby Isaac 
3128b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
3138b0b4c70SToby Isaac         ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr);
3148b0b4c70SToby Isaac       }
3158b0b4c70SToby Isaac       if (aDof) {
3168b0b4c70SToby Isaac         PetscInt aOff;
3178b0b4c70SToby Isaac         PetscInt s, q;
3188b0b4c70SToby Isaac 
3198b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
3208b0b4c70SToby Isaac           orig[j - 1] = orig[j];
3218b0b4c70SToby Isaac         }
3228b0b4c70SToby Isaac         origSize--;
3238b0b4c70SToby Isaac         numAdj--;
3248b0b4c70SToby Isaac         ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr);
3258b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
3268b0b4c70SToby Isaac           for (q = 0; q < numAdj || (orig[numAdj++] = anchors[aOff+s],0); ++q) {
3278b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
3288b0b4c70SToby Isaac           }
3298b0b4c70SToby Isaac           if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
3308b0b4c70SToby Isaac         }
3318b0b4c70SToby Isaac       }
3328b0b4c70SToby Isaac       else {
3338b0b4c70SToby Isaac         i++;
3348b0b4c70SToby Isaac       }
3358b0b4c70SToby Isaac     }
3368b0b4c70SToby Isaac     *adjSize = numAdj;
3378b0b4c70SToby Isaac     ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr);
3388b0b4c70SToby Isaac   }
33970034214SMatthew G. Knepley   PetscFunctionReturn(0);
34070034214SMatthew G. Knepley }
34170034214SMatthew G. Knepley 
34270034214SMatthew G. Knepley #undef __FUNCT__
34370034214SMatthew G. Knepley #define __FUNCT__ "DMPlexGetAdjacency"
34470034214SMatthew G. Knepley /*@
34570034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
34670034214SMatthew G. Knepley 
34770034214SMatthew G. Knepley   Input Parameters:
34870034214SMatthew G. Knepley + dm - The DM object
34970034214SMatthew G. Knepley . p  - The point
35070034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE
35170034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize
35270034214SMatthew G. Knepley 
35370034214SMatthew G. Knepley   Output Parameters:
35470034214SMatthew G. Knepley + adjSize - The number of adjacent points
35570034214SMatthew G. Knepley - adj - The adjacent points
35670034214SMatthew G. Knepley 
35770034214SMatthew G. Knepley   Level: advanced
35870034214SMatthew G. Knepley 
35970034214SMatthew G. Knepley   Notes: The user must PetscFree the adj array if it was not passed in.
36070034214SMatthew G. Knepley 
36170034214SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator()
36270034214SMatthew G. Knepley @*/
36370034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
36470034214SMatthew G. Knepley {
36570034214SMatthew G. Knepley   DM_Plex       *mesh = (DM_Plex *) dm->data;
36670034214SMatthew G. Knepley   PetscErrorCode ierr;
36770034214SMatthew G. Knepley 
36870034214SMatthew G. Knepley   PetscFunctionBeginHot;
36970034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37070034214SMatthew G. Knepley   PetscValidPointer(adjSize,3);
37170034214SMatthew G. Knepley   PetscValidPointer(adj,4);
3725b317d89SToby Isaac   ierr = DMPlexGetAdjacency_Internal(dm, p, mesh->useCone, mesh->useClosure, mesh->useAnchors, adjSize, adj);CHKERRQ(ierr);
37370034214SMatthew G. Knepley   PetscFunctionReturn(0);
37470034214SMatthew G. Knepley }
37508633170SToby Isaac 
376b0a623aaSMatthew G. Knepley #undef __FUNCT__
377b0a623aaSMatthew G. Knepley #define __FUNCT__ "DMPlexCreateTwoSidedProcessSF"
378b0a623aaSMatthew G. Knepley /*@
379b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
380b0a623aaSMatthew G. Knepley 
381b0a623aaSMatthew G. Knepley   Collective on DM
382b0a623aaSMatthew G. Knepley 
383b0a623aaSMatthew G. Knepley   Input Parameters:
384b0a623aaSMatthew G. Knepley + dm      - The DM
385b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity
386b0a623aaSMatthew G. Knepley 
387b0a623aaSMatthew G. Knepley   Output Parameters:
388b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
389b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
390b0a623aaSMatthew G. Knepley 
391b0a623aaSMatthew G. Knepley   Level: developer
392b0a623aaSMatthew G. Knepley 
393b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF()
394b0a623aaSMatthew G. Knepley @*/
395b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
396b0a623aaSMatthew G. Knepley {
397b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
398b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
399b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
400b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
401b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
402b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
403b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
404b0a623aaSMatthew G. Knepley   PetscMPIInt        numProcs, proc, rank;
405b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
406b0a623aaSMatthew G. Knepley 
407b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
408b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
409b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
410b0a623aaSMatthew G. Knepley   if (processRanks) {PetscValidPointer(processRanks, 3);}
411b0a623aaSMatthew G. Knepley   if (sfProcess)    {PetscValidPointer(sfProcess, 4);}
412b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &numProcs);CHKERRQ(ierr);
413b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
414b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr);
415b0a623aaSMatthew G. Knepley   ierr = PetscBTCreate(numProcs, &neighbors);CHKERRQ(ierr);
416b0a623aaSMatthew G. Knepley   ierr = PetscBTMemzero(numProcs, neighbors);CHKERRQ(ierr);
417b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
418b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr);
419b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr);
420b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
421b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
422b0a623aaSMatthew G. Knepley 
423b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr);
424b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr);
425302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
426b0a623aaSMatthew G. Knepley   }
427b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr);
428b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
429b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr);
430b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr);
431b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
432b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
433b0a623aaSMatthew G. Knepley 
434b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr);
435b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr);
436302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
437b0a623aaSMatthew G. Knepley   }
438b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr);
439b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
440b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
441b0a623aaSMatthew G. Knepley   /* Calculate edges */
442b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
443b0a623aaSMatthew G. Knepley   for(proc = 0, numNeighbors = 0; proc < numProcs; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
444b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr);
445b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr);
446b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr);
447b0a623aaSMatthew G. Knepley   for(proc = 0, n = 0; proc < numProcs; ++proc) {
448b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
449b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
450b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
451b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
452b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
453b0a623aaSMatthew G. Knepley       ++n;
454b0a623aaSMatthew G. Knepley     }
455b0a623aaSMatthew G. Knepley   }
456b0a623aaSMatthew G. Knepley   ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr);
457b0a623aaSMatthew G. Knepley   if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);}
458b0a623aaSMatthew G. Knepley   else              {ierr = PetscFree(ranksNew);CHKERRQ(ierr);}
459b0a623aaSMatthew G. Knepley   if (sfProcess) {
460b0a623aaSMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr);
461b0a623aaSMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr);
462b0a623aaSMatthew G. Knepley     ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr);
463b0a623aaSMatthew G. Knepley     ierr = PetscSFSetGraph(*sfProcess, numProcs, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
464b0a623aaSMatthew G. Knepley   }
465b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
466b0a623aaSMatthew G. Knepley }
467b0a623aaSMatthew G. Knepley 
468b0a623aaSMatthew G. Knepley #undef __FUNCT__
469b0a623aaSMatthew G. Knepley #define __FUNCT__ "DMPlexDistributeOwnership"
470b0a623aaSMatthew G. Knepley /*@
471b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
472b0a623aaSMatthew G. Knepley 
473b0a623aaSMatthew G. Knepley   Collective on DM
474b0a623aaSMatthew G. Knepley 
475b0a623aaSMatthew G. Knepley   Input Parameter:
476b0a623aaSMatthew G. Knepley . dm - The DM
477b0a623aaSMatthew G. Knepley 
478b0a623aaSMatthew G. Knepley   Output Parameters:
479b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
480b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
481b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
482b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
483b0a623aaSMatthew G. Knepley 
484b0a623aaSMatthew G. Knepley   Level: developer
485b0a623aaSMatthew G. Knepley 
486b0a623aaSMatthew G. Knepley .seealso: DMPlexCreateOverlap()
487b0a623aaSMatthew G. Knepley @*/
488b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
489b0a623aaSMatthew G. Knepley {
490b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
491b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
492b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
493b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
494b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
495b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
496b0a623aaSMatthew G. Knepley   PetscErrorCode  ierr;
497b0a623aaSMatthew G. Knepley 
498b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
499b0a623aaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
500b0a623aaSMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
501b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
502b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
503b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
504b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr);
505b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr);
506b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr);
507b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr);
508b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);}
509b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr);
510b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
511b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr);
512b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr);
513b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(nedges,  &remoterank);CHKERRQ(ierr);
514b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
515b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
516b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
517b0a623aaSMatthew G. Knepley   ierr = PetscFree(myrank);CHKERRQ(ierr);
518b0a623aaSMatthew G. Knepley   ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr);
519b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
520b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr);
521b0a623aaSMatthew G. Knepley   ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr);
522b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
523b0a623aaSMatthew G. Knepley }
524b0a623aaSMatthew G. Knepley 
525b0a623aaSMatthew G. Knepley #undef __FUNCT__
526b0a623aaSMatthew G. Knepley #define __FUNCT__ "DMPlexCreateOverlap"
527278397a0SMatthew G. Knepley /*@C
528b0a623aaSMatthew G. Knepley   DMPlexCreateOverlap - Compute owner information for shared points. This basically gets two-sided for an SF.
529b0a623aaSMatthew G. Knepley 
530b0a623aaSMatthew G. Knepley   Collective on DM
531b0a623aaSMatthew G. Knepley 
532b0a623aaSMatthew G. Knepley   Input Parameters:
533b0a623aaSMatthew G. Knepley + dm          - The DM
53424d039d7SMichael Lange . levels      - Number of overlap levels
535b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
536b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
537b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
538b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
539b0a623aaSMatthew G. Knepley 
540b0a623aaSMatthew G. Knepley   Output Parameters:
541a9f1d5b2SMichael Lange + ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
542b0a623aaSMatthew G. Knepley 
543b0a623aaSMatthew G. Knepley   Level: developer
544b0a623aaSMatthew G. Knepley 
5451fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute()
546b0a623aaSMatthew G. Knepley @*/
547a9f1d5b2SMichael Lange PetscErrorCode DMPlexCreateOverlap(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
548b0a623aaSMatthew G. Knepley {
549e540f424SMichael Lange   MPI_Comm           comm;
550b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
551b0a623aaSMatthew G. Knepley   PetscSF            sfPoint, sfProc;
552b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
553b0a623aaSMatthew G. Knepley   const PetscInt    *local;
5541fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
555b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
5561fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
557b0a623aaSMatthew G. Knepley   PetscMPIInt        rank, numProcs;
55826a7d390SMatthew G. Knepley   PetscBool          useCone, useClosure, flg;
559b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
560b0a623aaSMatthew G. Knepley 
561b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
562e540f424SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
563e540f424SMichael Lange   ierr = MPI_Comm_size(comm, &numProcs);CHKERRQ(ierr);
564e540f424SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
565b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
566b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
567b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr);
568b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr);
569b0a623aaSMatthew G. Knepley   ierr = DMLabelCreate("Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr);
570b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
571b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
572b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
573b0a623aaSMatthew G. Knepley 
574b0a623aaSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, local[l], &adjSize, &adj);CHKERRQ(ierr);
575b0a623aaSMatthew G. Knepley     for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);}
576b0a623aaSMatthew G. Knepley   }
577b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr);
578b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr);
579b0a623aaSMatthew G. Knepley   /* Handle roots */
580b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
581b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
582b0a623aaSMatthew G. Knepley 
583b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
584b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
585b0a623aaSMatthew G. Knepley       ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr);
586b0a623aaSMatthew G. Knepley       if (neighbors) {
587b0a623aaSMatthew G. Knepley         ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr);
588b0a623aaSMatthew G. Knepley         ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
589b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
590b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
591b0a623aaSMatthew G. Knepley 
592b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
593b0a623aaSMatthew G. Knepley           for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
594b0a623aaSMatthew G. Knepley         }
595b0a623aaSMatthew G. Knepley       }
596b0a623aaSMatthew G. Knepley     }
597b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
598b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr);
599b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
600b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr);
601b0a623aaSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
602b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
603b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
604b0a623aaSMatthew G. Knepley 
605b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
606b0a623aaSMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
607b0a623aaSMatthew G. Knepley     }
608b0a623aaSMatthew G. Knepley   }
609b0a623aaSMatthew G. Knepley   ierr = PetscFree(adj);CHKERRQ(ierr);
610b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr);
611b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr);
61224d039d7SMichael Lange   /* Add additional overlap levels */
61324d039d7SMichael Lange   for (l = 1; l < levels; l++) {ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr);}
61426a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
61526a7d390SMatthew G. Knepley   ierr = DMPlexGetAdjacencyUseCone(dm, &useCone);CHKERRQ(ierr);
61626a7d390SMatthew G. Knepley   ierr = DMPlexGetAdjacencyUseClosure(dm, &useClosure);CHKERRQ(ierr);
61726a7d390SMatthew G. Knepley   if (useCone || !useClosure) {
6185abbe4feSMichael Lange     ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr);
61926a7d390SMatthew G. Knepley   }
620e540f424SMichael Lange   ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr);
621e540f424SMichael Lange   if (flg) {
622b0a623aaSMatthew G. Knepley     ierr = DMLabelView(ovAdjByRank, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
623b0a623aaSMatthew G. Knepley   }
6241fd9873aSMichael Lange   /* Make process SF and invert sender to receiver label */
625b0a623aaSMatthew G. Knepley   ierr = DMPlexCreateTwoSidedProcessSF(dm, sfPoint, rootSection, rootrank, leafSection, leafrank, NULL, &sfProc);CHKERRQ(ierr);
626a9f1d5b2SMichael Lange   ierr = DMLabelCreate("Overlap label", ovLabel);CHKERRQ(ierr);
627a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, sfProc, *ovLabel);CHKERRQ(ierr);
628a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
629a9f1d5b2SMichael Lange   for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
630e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
631a9f1d5b2SMichael Lange     ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr);
632a9f1d5b2SMichael Lange     ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr);
633e540f424SMichael Lange   }
634e540f424SMichael Lange   /* Clean up */
6351fd9873aSMichael Lange   ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr);
636b0a623aaSMatthew G. Knepley   ierr = PetscSFDestroy(&sfProc);CHKERRQ(ierr);
637b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
638b0a623aaSMatthew G. Knepley }
63970034214SMatthew G. Knepley 
64070034214SMatthew G. Knepley #undef __FUNCT__
64146f9b1c3SMichael Lange #define __FUNCT__ "DMPlexCreateOverlapMigrationSF"
64246f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
64346f9b1c3SMichael Lange {
64446f9b1c3SMichael Lange   MPI_Comm           comm;
64546f9b1c3SMichael Lange   PetscMPIInt        rank, numProcs;
64646f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
64746f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
64846f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
64946f9b1c3SMichael Lange   PetscSFNode       *iremote;
65046f9b1c3SMichael Lange   PetscSF            pointSF;
65146f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
65246f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
65346f9b1c3SMichael Lange   PetscErrorCode     ierr;
65446f9b1c3SMichael Lange 
65546f9b1c3SMichael Lange   PetscFunctionBegin;
65646f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
65746f9b1c3SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
65846f9b1c3SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
65946f9b1c3SMichael Lange   ierr = MPI_Comm_size(comm, &numProcs);CHKERRQ(ierr);
66046f9b1c3SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
66146f9b1c3SMichael Lange 
66246f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
66346f9b1c3SMichael Lange   ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr);
66446f9b1c3SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
66546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
66646f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
66746f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
66846f9b1c3SMichael Lange   }
66946f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
67046f9b1c3SMichael Lange   ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
67146f9b1c3SMichael Lange   ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
67246f9b1c3SMichael Lange 
67346f9b1c3SMichael Lange   /* Count recevied points in each stratum and compute the internal strata shift */
67446f9b1c3SMichael Lange   ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr);
67546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
67646f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
67746f9b1c3SMichael Lange   depthShift[dim] = 0;
67846f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
67946f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
68046f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
68146f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
68246f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
68346f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
68446f9b1c3SMichael Lange   }
68546f9b1c3SMichael Lange 
68646f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
68746f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
68846f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
68909b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr);
69009b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr);
69146f9b1c3SMichael Lange   /* First map local points to themselves */
69246f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
69346f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
69446f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
69546f9b1c3SMichael Lange       point = p + depthShift[d];
69646f9b1c3SMichael Lange       ilocal[point] = point;
69746f9b1c3SMichael Lange       iremote[point].index = p;
69846f9b1c3SMichael Lange       iremote[point].rank = rank;
69946f9b1c3SMichael Lange       depthIdx[d]++;
70046f9b1c3SMichael Lange     }
70146f9b1c3SMichael Lange   }
70246f9b1c3SMichael Lange 
70346f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
70446f9b1c3SMichael Lange   ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr);
70546f9b1c3SMichael Lange   ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr);
70646f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
70746f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
70846f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
70946f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
71046f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
71146f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
71246f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
71346f9b1c3SMichael Lange       }
71446f9b1c3SMichael Lange     }
71546f9b1c3SMichael Lange   }
71646f9b1c3SMichael Lange 
71746f9b1c3SMichael Lange   /* Now add the incoming overlap points */
71846f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
71946f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
72046f9b1c3SMichael Lange     ilocal[point] = point;
72146f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
72246f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
72346f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
72446f9b1c3SMichael Lange   }
72515fff7beSMatthew G. Knepley   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
72646f9b1c3SMichael Lange 
72746f9b1c3SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
72846f9b1c3SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr);
72946f9b1c3SMichael Lange   ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr);
73046f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
73146f9b1c3SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
73246f9b1c3SMichael Lange 
73346f9b1c3SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
73470034214SMatthew G. Knepley   PetscFunctionReturn(0);
73570034214SMatthew G. Knepley }
73670034214SMatthew G. Knepley 
73770034214SMatthew G. Knepley #undef __FUNCT__
738a9f1d5b2SMichael Lange #define __FUNCT__ "DMPlexStratifyMigrationSF"
739a9f1d5b2SMichael Lange /*@
740a9f1d5b2SMichael Lange   DMPlexStratifyMigrationSF - Add partition overlap to a distributed non-overlapping DM.
741a9f1d5b2SMichael Lange 
742a9f1d5b2SMichael Lange   Input Parameter:
743a9f1d5b2SMichael Lange + dm          - The DM
744a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
745a9f1d5b2SMichael Lange 
746a9f1d5b2SMichael Lange   Output Parameter:
747a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
748a9f1d5b2SMichael Lange 
749a9f1d5b2SMichael Lange   Level: developer
750a9f1d5b2SMichael Lange 
751a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap()
752a9f1d5b2SMichael Lange @*/
753a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
754a9f1d5b2SMichael Lange {
755a9f1d5b2SMichael Lange   MPI_Comm           comm;
756a9f1d5b2SMichael Lange   PetscMPIInt        rank, numProcs;
7577fab53ddSMatthew G. Knepley   PetscInt           d, ldepth, depth, p, pStart, pEnd, nroots, nleaves;
758a9f1d5b2SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
759a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
760a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
761a9f1d5b2SMichael Lange   PetscErrorCode     ierr;
762a9f1d5b2SMichael Lange 
763a9f1d5b2SMichael Lange   PetscFunctionBegin;
764a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
765a9f1d5b2SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
766a9f1d5b2SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
767a9f1d5b2SMichael Lange   ierr = MPI_Comm_size(comm, &numProcs);CHKERRQ(ierr);
7687fab53ddSMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr);
769b2566f29SBarry Smith   ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
7707fab53ddSMatthew G. Knepley   if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth);
771a9f1d5b2SMichael Lange 
772a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
773a9f1d5b2SMichael Lange   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr);
774a9f1d5b2SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
7757fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
776a9f1d5b2SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
7777fab53ddSMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) pointDepths[p] = d;
778a9f1d5b2SMichael Lange   }
7797fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) remoteDepths[p] = -1;
780a9f1d5b2SMichael Lange   ierr = PetscSFBcastBegin(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
781a9f1d5b2SMichael Lange   ierr = PetscSFBcastEnd(sf, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
782a9f1d5b2SMichael Lange   /* Count recevied points in each stratum and compute the internal strata shift */
7837fab53ddSMatthew G. Knepley   ierr = PetscMalloc3(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx);CHKERRQ(ierr);
7847fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) depthRecv[d] = 0;
7857fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) depthRecv[remoteDepths[p]]++;
7867fab53ddSMatthew G. Knepley   depthShift[depth] = 0;
7877fab53ddSMatthew G. Knepley   for (d = 0; d < depth; ++d) depthShift[d] = depthRecv[depth];
7887fab53ddSMatthew G. Knepley   for (d = 1; d < depth; ++d) depthShift[d] += depthRecv[0];
7897fab53ddSMatthew G. Knepley   for (d = depth-2; d > 0; --d) depthShift[d] += depthRecv[d+1];
7907fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {depthIdx[d] = 0;}
791a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
792a9f1d5b2SMichael Lange   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
7937fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
7947fab53ddSMatthew G. Knepley     const PetscInt dep = remoteDepths[p];
7957fab53ddSMatthew G. Knepley 
7967fab53ddSMatthew G. Knepley     ilocal[p] = depthShift[dep] + depthIdx[dep];
7977fab53ddSMatthew G. Knepley     depthIdx[dep]++;
798a9f1d5b2SMichael Lange   }
799a9f1d5b2SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
800a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr);
801a9f1d5b2SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr);
802a9f1d5b2SMichael Lange   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
803a9f1d5b2SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
804a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
805a9f1d5b2SMichael Lange }
806a9f1d5b2SMichael Lange 
807a9f1d5b2SMichael Lange #undef __FUNCT__
80870034214SMatthew G. Knepley #define __FUNCT__ "DMPlexDistributeField"
80970034214SMatthew G. Knepley /*@
81070034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
81170034214SMatthew G. Knepley 
81270034214SMatthew G. Knepley   Collective on DM
81370034214SMatthew G. Knepley 
81470034214SMatthew G. Knepley   Input Parameters:
81570034214SMatthew G. Knepley + dm - The DMPlex object
81670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
81770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
81870034214SMatthew G. Knepley - originalVec - The existing data
81970034214SMatthew G. Knepley 
82070034214SMatthew G. Knepley   Output Parameters:
82170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
82270034214SMatthew G. Knepley - newVec - The new data
82370034214SMatthew G. Knepley 
82470034214SMatthew G. Knepley   Level: developer
82570034214SMatthew G. Knepley 
82670034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData()
82770034214SMatthew G. Knepley @*/
82870034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
82970034214SMatthew G. Knepley {
83070034214SMatthew G. Knepley   PetscSF        fieldSF;
83170034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
83270034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
83370034214SMatthew G. Knepley   PetscErrorCode ierr;
83470034214SMatthew G. Knepley 
83570034214SMatthew G. Knepley   PetscFunctionBegin;
83670034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
83770034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
83870034214SMatthew G. Knepley 
83970034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
84070034214SMatthew G. Knepley   ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr);
84170034214SMatthew G. Knepley   ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr);
84270034214SMatthew G. Knepley 
84370034214SMatthew G. Knepley   ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr);
84470034214SMatthew G. Knepley   ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr);
84570034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
84670034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
84770034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
84870034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
84970034214SMatthew G. Knepley   ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr);
85070034214SMatthew G. Knepley   ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr);
85170034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
85270034214SMatthew G. Knepley   PetscFunctionReturn(0);
85370034214SMatthew G. Knepley }
85470034214SMatthew G. Knepley 
85570034214SMatthew G. Knepley #undef __FUNCT__
85670034214SMatthew G. Knepley #define __FUNCT__ "DMPlexDistributeFieldIS"
85770034214SMatthew G. Knepley /*@
85870034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
85970034214SMatthew G. Knepley 
86070034214SMatthew G. Knepley   Collective on DM
86170034214SMatthew G. Knepley 
86270034214SMatthew G. Knepley   Input Parameters:
86370034214SMatthew G. Knepley + dm - The DMPlex object
86470034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
86570034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
86670034214SMatthew G. Knepley - originalIS - The existing data
86770034214SMatthew G. Knepley 
86870034214SMatthew G. Knepley   Output Parameters:
86970034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
87070034214SMatthew G. Knepley - newIS - The new data
87170034214SMatthew G. Knepley 
87270034214SMatthew G. Knepley   Level: developer
87370034214SMatthew G. Knepley 
87470034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData()
87570034214SMatthew G. Knepley @*/
87670034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
87770034214SMatthew G. Knepley {
87870034214SMatthew G. Knepley   PetscSF         fieldSF;
87970034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
88070034214SMatthew G. Knepley   const PetscInt *originalValues;
88170034214SMatthew G. Knepley   PetscErrorCode  ierr;
88270034214SMatthew G. Knepley 
88370034214SMatthew G. Knepley   PetscFunctionBegin;
88470034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
88570034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
88670034214SMatthew G. Knepley 
88770034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
888854ce69bSBarry Smith   ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr);
88970034214SMatthew G. Knepley 
89070034214SMatthew G. Knepley   ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr);
89170034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
892aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
893aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
89470034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
89570034214SMatthew G. Knepley   ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr);
89670034214SMatthew G. Knepley   ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr);
89770034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
89870034214SMatthew G. Knepley   PetscFunctionReturn(0);
89970034214SMatthew G. Knepley }
90070034214SMatthew G. Knepley 
90170034214SMatthew G. Knepley #undef __FUNCT__
90270034214SMatthew G. Knepley #define __FUNCT__ "DMPlexDistributeData"
90370034214SMatthew G. Knepley /*@
90470034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
90570034214SMatthew G. Knepley 
90670034214SMatthew G. Knepley   Collective on DM
90770034214SMatthew G. Knepley 
90870034214SMatthew G. Knepley   Input Parameters:
90970034214SMatthew G. Knepley + dm - The DMPlex object
91070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
91170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
91270034214SMatthew G. Knepley . datatype - The type of data
91370034214SMatthew G. Knepley - originalData - The existing data
91470034214SMatthew G. Knepley 
91570034214SMatthew G. Knepley   Output Parameters:
91670034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
91770034214SMatthew G. Knepley - newData - The new data
91870034214SMatthew G. Knepley 
91970034214SMatthew G. Knepley   Level: developer
92070034214SMatthew G. Knepley 
92170034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField()
92270034214SMatthew G. Knepley @*/
92370034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
92470034214SMatthew G. Knepley {
92570034214SMatthew G. Knepley   PetscSF        fieldSF;
92670034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
92770034214SMatthew G. Knepley   PetscMPIInt    dataSize;
92870034214SMatthew G. Knepley   PetscErrorCode ierr;
92970034214SMatthew G. Knepley 
93070034214SMatthew G. Knepley   PetscFunctionBegin;
93170034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
93270034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
93370034214SMatthew G. Knepley 
93470034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
93570034214SMatthew G. Knepley   ierr = MPI_Type_size(datatype, &dataSize);CHKERRQ(ierr);
93670034214SMatthew G. Knepley   ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr);
93770034214SMatthew G. Knepley 
93870034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
93970034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
94070034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
94170034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
94270034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
94370034214SMatthew G. Knepley   PetscFunctionReturn(0);
94470034214SMatthew G. Knepley }
94570034214SMatthew G. Knepley 
94670034214SMatthew G. Knepley #undef __FUNCT__
947cc71bff1SMichael Lange #define __FUNCT__ "DMPlexDistributeCones"
948ac04eaf7SToby Isaac PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
949cc71bff1SMichael Lange {
950f5bf2dbfSMichael Lange   DM_Plex               *mesh  = (DM_Plex*) dm->data;
951cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
952cc71bff1SMichael Lange   MPI_Comm               comm;
953cc71bff1SMichael Lange   PetscSF                coneSF;
954cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
955ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
956cc71bff1SMichael Lange   PetscBool              flg;
957cc71bff1SMichael Lange   PetscErrorCode         ierr;
958cc71bff1SMichael Lange 
959cc71bff1SMichael Lange   PetscFunctionBegin;
960cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
961cc71bff1SMichael Lange   PetscValidPointer(dmParallel,4);
962cc71bff1SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
963cc71bff1SMichael Lange 
964cc71bff1SMichael Lange   /* Distribute cone section */
965cc71bff1SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
966cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr);
967cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr);
968cc71bff1SMichael Lange   ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr);
969cc71bff1SMichael Lange   ierr = DMSetUp(dmParallel);CHKERRQ(ierr);
970cc71bff1SMichael Lange   {
971cc71bff1SMichael Lange     PetscInt pStart, pEnd, p;
972cc71bff1SMichael Lange 
973cc71bff1SMichael Lange     ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr);
974cc71bff1SMichael Lange     for (p = pStart; p < pEnd; ++p) {
975cc71bff1SMichael Lange       PetscInt coneSize;
976cc71bff1SMichael Lange       ierr               = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr);
977cc71bff1SMichael Lange       pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize);
978cc71bff1SMichael Lange     }
979cc71bff1SMichael Lange   }
980cc71bff1SMichael Lange   /* Communicate and renumber cones */
981cc71bff1SMichael Lange   ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr);
982cc71bff1SMichael Lange   ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr);
983ac04eaf7SToby Isaac   if (original) {
984ac04eaf7SToby Isaac     PetscInt numCones;
985ac04eaf7SToby Isaac 
986ac04eaf7SToby Isaac     ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr);
987ac04eaf7SToby Isaac     ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr);
988ac04eaf7SToby Isaac   }
989ac04eaf7SToby Isaac   else {
990ac04eaf7SToby Isaac     globCones = cones;
991ac04eaf7SToby Isaac   }
992cc71bff1SMichael Lange   ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr);
993ac04eaf7SToby Isaac   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
994ac04eaf7SToby Isaac   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
995ac04eaf7SToby Isaac   if (original) {
996ac04eaf7SToby Isaac     ierr = PetscFree(globCones);CHKERRQ(ierr);
997ac04eaf7SToby Isaac   }
998cc71bff1SMichael Lange   ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr);
999cc71bff1SMichael Lange   ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr);
10003533c52bSMatthew G. Knepley #if PETSC_USE_DEBUG
10013533c52bSMatthew G. Knepley   {
10023533c52bSMatthew G. Knepley     PetscInt  p;
10033533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
10043533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
10053533c52bSMatthew G. Knepley       if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);}
10063533c52bSMatthew G. Knepley     }
10073533c52bSMatthew G. Knepley     if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
10083533c52bSMatthew G. Knepley   }
10093533c52bSMatthew G. Knepley #endif
1010cc71bff1SMichael Lange   ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr);
1011cc71bff1SMichael Lange   if (flg) {
1012cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr);
1013cc71bff1SMichael Lange     ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1014cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr);
1015cc71bff1SMichael Lange     ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1016cc71bff1SMichael Lange     ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr);
1017cc71bff1SMichael Lange   }
1018cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr);
1019cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr);
1020cc71bff1SMichael Lange   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
1021cc71bff1SMichael Lange   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
1022cc71bff1SMichael Lange   ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr);
1023cc71bff1SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
1024cc71bff1SMichael Lange   /* Create supports and stratify sieve */
1025cc71bff1SMichael Lange   {
1026cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1027cc71bff1SMichael Lange 
1028cc71bff1SMichael Lange     ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr);
1029cc71bff1SMichael Lange     ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr);
1030cc71bff1SMichael Lange   }
1031cc71bff1SMichael Lange   ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr);
1032cc71bff1SMichael Lange   ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr);
1033f5bf2dbfSMichael Lange   pmesh->useCone    = mesh->useCone;
1034f5bf2dbfSMichael Lange   pmesh->useClosure = mesh->useClosure;
1035cc71bff1SMichael Lange   PetscFunctionReturn(0);
1036cc71bff1SMichael Lange }
1037cc71bff1SMichael Lange 
1038cc71bff1SMichael Lange #undef __FUNCT__
10390df0e737SMichael Lange #define __FUNCT__ "DMPlexDistributeCoordinates"
10400df0e737SMichael Lange PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
10410df0e737SMichael Lange {
10420df0e737SMichael Lange   MPI_Comm         comm;
10430df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
10440df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
10450df0e737SMichael Lange   PetscInt         bs;
10460df0e737SMichael Lange   const char      *name;
10470df0e737SMichael Lange   const PetscReal *maxCell, *L;
10485dc8c3f7SMatthew G. Knepley   const DMBoundaryType *bd;
10490df0e737SMichael Lange   PetscErrorCode   ierr;
10500df0e737SMichael Lange 
10510df0e737SMichael Lange   PetscFunctionBegin;
10520df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10530df0e737SMichael Lange   PetscValidPointer(dmParallel, 3);
10540df0e737SMichael Lange 
10550df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10560df0e737SMichael Lange   ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr);
10570df0e737SMichael Lange   ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr);
10580df0e737SMichael Lange   ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr);
10590df0e737SMichael Lange   if (originalCoordinates) {
10600df0e737SMichael Lange     ierr = VecCreate(comm, &newCoordinates);CHKERRQ(ierr);
10610df0e737SMichael Lange     ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr);
10620df0e737SMichael Lange     ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr);
10630df0e737SMichael Lange 
10640df0e737SMichael Lange     ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr);
10650df0e737SMichael Lange     ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr);
10660df0e737SMichael Lange     ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr);
10670df0e737SMichael Lange     ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr);
10680df0e737SMichael Lange     ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr);
10690df0e737SMichael Lange   }
10705dc8c3f7SMatthew G. Knepley   ierr = DMGetPeriodicity(dm, &maxCell, &L, &bd);CHKERRQ(ierr);
10715dc8c3f7SMatthew G. Knepley   if (L) {ierr = DMSetPeriodicity(dmParallel, maxCell, L, bd);CHKERRQ(ierr);}
10720df0e737SMichael Lange   PetscFunctionReturn(0);
10730df0e737SMichael Lange }
10740df0e737SMichael Lange 
10750df0e737SMichael Lange #undef __FUNCT__
10760df0e737SMichael Lange #define __FUNCT__ "DMPlexDistributeLabels"
1077d995df53SMatthew G. Knepley /* Here we are assuming that process 0 always has everything */
10782eb1fa14SMichael Lange PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
10790df0e737SMichael Lange {
1080df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
10810df0e737SMichael Lange   MPI_Comm         comm;
1082df0420ecSMatthew G. Knepley   DMLabel          depth;
10830df0e737SMichael Lange   PetscMPIInt      rank;
1084d995df53SMatthew G. Knepley   PetscInt         numLabels, numLocalLabels, l;
1085df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1086df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
10870df0e737SMichael Lange   PetscErrorCode   ierr;
10880df0e737SMichael Lange 
10890df0e737SMichael Lange   PetscFunctionBegin;
10900df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10912eb1fa14SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
10920df0e737SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
10930df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10940df0e737SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
10950df0e737SMichael Lange 
1096df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
1097df0420ecSMatthew G. Knepley   ierr = DMPlexGetDepthLabel(dm, &depth);CHKERRQ(ierr);
1098df0420ecSMatthew G. Knepley   if (depth) {ierr = DMLabelGetState(depth, &depthState);CHKERRQ(ierr);}
1099df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
1100b2566f29SBarry Smith   ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr);
1101df0420ecSMatthew G. Knepley   if (sendDepth) {
1102*c58f1c22SToby Isaac     ierr = DMRemoveLabel(dmParallel, "depth", &depth);CHKERRQ(ierr);
1103df0420ecSMatthew G. Knepley     ierr = DMLabelDestroy(&depth);CHKERRQ(ierr);
1104df0420ecSMatthew G. Knepley   }
1105d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
1106*c58f1c22SToby Isaac   ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr);
1107d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
11080df0e737SMichael Lange   ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRQ(ierr);
1109627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
1110bdd2d751SMichael Lange   for (l = numLabels-1; l >= 0; --l) {
1111bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
11120df0e737SMichael Lange     PetscBool   isdepth;
11130df0e737SMichael Lange 
1114d995df53SMatthew G. Knepley     if (hasLabels) {
1115*c58f1c22SToby Isaac       ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr);
11160df0e737SMichael Lange       /* Skip "depth" because it is recreated */
1117bdd2d751SMichael Lange       ierr = PetscStrcmp(label->name, "depth", &isdepth);CHKERRQ(ierr);
1118bdd2d751SMichael Lange     }
11190df0e737SMichael Lange     ierr = MPI_Bcast(&isdepth, 1, MPIU_BOOL, 0, comm);CHKERRQ(ierr);
1120df0420ecSMatthew G. Knepley     if (isdepth && !sendDepth) continue;
1121bdd2d751SMichael Lange     ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr);
1122*c58f1c22SToby Isaac     ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr);
11230df0e737SMichael Lange   }
11240df0e737SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
11250df0e737SMichael Lange   PetscFunctionReturn(0);
11260df0e737SMichael Lange }
11270df0e737SMichael Lange 
11289734c634SMichael Lange #undef __FUNCT__
11299734c634SMichael Lange #define __FUNCT__ "DMPlexDistributeSetupHybrid"
11309734c634SMichael Lange PetscErrorCode DMPlexDistributeSetupHybrid(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping renumbering, DM dmParallel)
11319734c634SMichael Lange {
11329734c634SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
11339734c634SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
11349734c634SMichael Lange   MPI_Comm        comm;
11359734c634SMichael Lange   const PetscInt *gpoints;
11369734c634SMichael Lange   PetscInt        dim, depth, n, d;
11379734c634SMichael Lange   PetscErrorCode  ierr;
11389734c634SMichael Lange 
11399734c634SMichael Lange   PetscFunctionBegin;
11409734c634SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11419734c634SMichael Lange   PetscValidPointer(dmParallel, 4);
11429734c634SMichael Lange 
11439734c634SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
11449734c634SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
11459734c634SMichael Lange 
11469734c634SMichael Lange   /* Setup hybrid structure */
11479734c634SMichael Lange   for (d = 0; d <= dim; ++d) {pmesh->hybridPointMax[d] = mesh->hybridPointMax[d];}
11489734c634SMichael Lange   ierr = MPI_Bcast(pmesh->hybridPointMax, dim+1, MPIU_INT, 0, comm);CHKERRQ(ierr);
11499734c634SMichael Lange   ierr = ISLocalToGlobalMappingGetSize(renumbering, &n);CHKERRQ(ierr);
11509734c634SMichael Lange   ierr = ISLocalToGlobalMappingGetIndices(renumbering, &gpoints);CHKERRQ(ierr);
11519734c634SMichael Lange   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
11529734c634SMichael Lange   for (d = 0; d <= dim; ++d) {
11539734c634SMichael Lange     PetscInt pmax = pmesh->hybridPointMax[d], newmax = 0, pEnd, stratum[2], p;
11549734c634SMichael Lange 
11559734c634SMichael Lange     if (pmax < 0) continue;
11569734c634SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d > depth ? depth : d, &stratum[0], &stratum[1]);CHKERRQ(ierr);
11579734c634SMichael Lange     ierr = DMPlexGetDepthStratum(dmParallel, d, NULL, &pEnd);CHKERRQ(ierr);
11589734c634SMichael Lange     ierr = MPI_Bcast(stratum, 2, MPIU_INT, 0, comm);CHKERRQ(ierr);
11599734c634SMichael Lange     for (p = 0; p < n; ++p) {
11609734c634SMichael Lange       const PetscInt point = gpoints[p];
11619734c634SMichael Lange 
11629734c634SMichael Lange       if ((point >= stratum[0]) && (point < stratum[1]) && (point >= pmax)) ++newmax;
11639734c634SMichael Lange     }
11649734c634SMichael Lange     if (newmax > 0) pmesh->hybridPointMax[d] = pEnd - newmax;
11659734c634SMichael Lange     else            pmesh->hybridPointMax[d] = -1;
11669734c634SMichael Lange   }
11679734c634SMichael Lange   ierr = ISLocalToGlobalMappingRestoreIndices(renumbering, &gpoints);CHKERRQ(ierr);
11689734c634SMichael Lange   PetscFunctionReturn(0);
11699734c634SMichael Lange }
11700df0e737SMichael Lange 
1171a6f36705SMichael Lange #undef __FUNCT__
1172a6f36705SMichael Lange #define __FUNCT__ "DMPlexDistributeSetupTree"
117308633170SToby Isaac PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1174a6f36705SMichael Lange {
117515078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
117615078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1177a6f36705SMichael Lange   MPI_Comm        comm;
1178a6f36705SMichael Lange   DM              refTree;
1179a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1180a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1181a6f36705SMichael Lange   PetscBool       flg;
1182a6f36705SMichael Lange   PetscErrorCode  ierr;
1183a6f36705SMichael Lange 
1184a6f36705SMichael Lange   PetscFunctionBegin;
1185a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1186a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 4);
1187a6f36705SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1188a6f36705SMichael Lange 
1189a6f36705SMichael Lange   /* Set up tree */
1190a6f36705SMichael Lange   ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr);
1191a6f36705SMichael Lange   ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr);
1192a6f36705SMichael Lange   ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr);
1193a6f36705SMichael Lange   if (origParentSection) {
1194a6f36705SMichael Lange     PetscInt        pStart, pEnd;
119508633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1196a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1197a6f36705SMichael Lange     PetscSF         parentSF;
1198a6f36705SMichael Lange 
1199a6f36705SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
1200a6f36705SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr);
1201a6f36705SMichael Lange     ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr);
1202a6f36705SMichael Lange     ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr);
1203a6f36705SMichael Lange     ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr);
1204a6f36705SMichael Lange     ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr);
1205a6f36705SMichael Lange     ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr);
120608633170SToby Isaac     if (original) {
120708633170SToby Isaac       PetscInt numParents;
120808633170SToby Isaac 
120908633170SToby Isaac       ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr);
121008633170SToby Isaac       ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr);
121108633170SToby Isaac       ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr);
121208633170SToby Isaac     }
121308633170SToby Isaac     else {
121408633170SToby Isaac       globParents = origParents;
121508633170SToby Isaac     }
121608633170SToby Isaac     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
121708633170SToby Isaac     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
121808633170SToby Isaac     if (original) {
121908633170SToby Isaac       ierr = PetscFree(globParents);CHKERRQ(ierr);
122008633170SToby Isaac     }
1221a6f36705SMichael Lange     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1222a6f36705SMichael Lange     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1223a6f36705SMichael Lange     ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr);
12244a54e071SToby Isaac #if PETSC_USE_DEBUG
12254a54e071SToby Isaac     {
12264a54e071SToby Isaac       PetscInt  p;
12274a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
12284a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
12294a54e071SToby Isaac         if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);}
12304a54e071SToby Isaac       }
12314a54e071SToby Isaac       if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
12324a54e071SToby Isaac     }
12334a54e071SToby Isaac #endif
1234a6f36705SMichael Lange     ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr);
1235a6f36705SMichael Lange     if (flg) {
1236a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr);
1237a6f36705SMichael Lange       ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1238a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr);
1239a6f36705SMichael Lange       ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1240a6f36705SMichael Lange       ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr);
1241a6f36705SMichael Lange     }
1242a6f36705SMichael Lange     ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr);
1243a6f36705SMichael Lange     ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr);
1244a6f36705SMichael Lange     ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr);
1245a6f36705SMichael Lange     ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr);
1246a6f36705SMichael Lange   }
124715078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1248a6f36705SMichael Lange   PetscFunctionReturn(0);
1249a6f36705SMichael Lange }
12500df0e737SMichael Lange 
12510df0e737SMichael Lange #undef __FUNCT__
12524eca1733SMichael Lange #define __FUNCT__ "DMPlexDistributeSF"
1253f8987ae8SMichael Lange PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
12544eca1733SMichael Lange {
12554eca1733SMichael Lange   DM_Plex               *mesh  = (DM_Plex*) dm->data;
12564eca1733SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
12574eca1733SMichael Lange   PetscMPIInt            rank, numProcs;
12584eca1733SMichael Lange   MPI_Comm               comm;
12594eca1733SMichael Lange   PetscErrorCode         ierr;
12604eca1733SMichael Lange 
12614eca1733SMichael Lange   PetscFunctionBegin;
12624eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12634eca1733SMichael Lange   PetscValidPointer(dmParallel,7);
12644eca1733SMichael Lange 
12654eca1733SMichael Lange   /* Create point SF for parallel mesh */
12664eca1733SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12674eca1733SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
12684eca1733SMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
12694eca1733SMichael Lange   ierr = MPI_Comm_size(comm, &numProcs);CHKERRQ(ierr);
12704eca1733SMichael Lange   {
12714eca1733SMichael Lange     const PetscInt *leaves;
12724eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
12734eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
12744eca1733SMichael Lange     PetscInt        pStart, pEnd;
12754eca1733SMichael Lange 
12764eca1733SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
12774eca1733SMichael Lange     ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr);
12784eca1733SMichael Lange     ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr);
12794eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
12804eca1733SMichael Lange       rowners[p].rank  = -1;
12814eca1733SMichael Lange       rowners[p].index = -1;
12824eca1733SMichael Lange     }
12834eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12844eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12854eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12864eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
12874eca1733SMichael Lange         lowners[p].rank  = rank;
12884eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
12894eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
12904eca1733SMichael Lange         lowners[p].rank  = -2;
12914eca1733SMichael Lange         lowners[p].index = -2;
12924eca1733SMichael Lange       }
12934eca1733SMichael Lange     }
12944eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
12954eca1733SMichael Lange       rowners[p].rank  = -3;
12964eca1733SMichael Lange       rowners[p].index = -3;
12974eca1733SMichael Lange     }
12984eca1733SMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12994eca1733SMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
13004eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
13014eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
13024eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
13034eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
13044eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
13054eca1733SMichael Lange     }
13064eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr);
13074eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr);
13084eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
13094eca1733SMichael Lange       if (lowners[p].rank != rank) {
13104eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
13114eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
13124eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
13134eca1733SMichael Lange         ++gp;
13144eca1733SMichael Lange       }
13154eca1733SMichael Lange     }
13164eca1733SMichael Lange     ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr);
13174eca1733SMichael Lange     ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr);
13184eca1733SMichael Lange     ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr);
13194eca1733SMichael Lange   }
13204eca1733SMichael Lange   pmesh->useCone    = mesh->useCone;
13214eca1733SMichael Lange   pmesh->useClosure = mesh->useClosure;
13224eca1733SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
13234eca1733SMichael Lange   PetscFunctionReturn(0);
13244eca1733SMichael Lange }
13254eca1733SMichael Lange 
13264eca1733SMichael Lange #undef __FUNCT__
1327f5bf2dbfSMichael Lange #define __FUNCT__ "DMPlexCreatePointSF"
1328f5bf2dbfSMichael Lange /*@C
1329f5bf2dbfSMichael Lange   DMPlexDerivePointSF - Build a point SF from an SF describing a point migration
1330f5bf2dbfSMichael Lange 
1331f5bf2dbfSMichael Lange   Input Parameter:
1332f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1333f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
13341627f6ccSMichael Lange . ownership   - Flag causing a vote to determine point ownership
1335f5bf2dbfSMichael Lange 
1336f5bf2dbfSMichael Lange   Output Parameter:
1337f5bf2dbfSMichael Lange - pointSF     - The star forest describing the point overlap in the remapped DM
1338f5bf2dbfSMichael Lange 
1339f5bf2dbfSMichael Lange   Level: developer
1340f5bf2dbfSMichael Lange 
1341f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
1342f5bf2dbfSMichael Lange @*/
1343f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1344f5bf2dbfSMichael Lange {
1345f5bf2dbfSMichael Lange   PetscMPIInt        rank;
13461627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1347f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1348f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1349f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1350f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
1351f5bf2dbfSMichael Lange   PetscErrorCode     ierr;
1352f5bf2dbfSMichael Lange 
1353f5bf2dbfSMichael Lange   PetscFunctionBegin;
1354f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1355f5bf2dbfSMichael Lange   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
1356f5bf2dbfSMichael Lange 
1357f5bf2dbfSMichael Lange   ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr);
1358f5bf2dbfSMichael Lange   ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr);
1359f5bf2dbfSMichael Lange   if (ownership) {
13601627f6ccSMichael Lange     /* Point ownership vote: Process with highest rank ownes shared points */
1361f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
1362f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1363f5bf2dbfSMichael Lange       leafNodes[p].rank  = rank;
136443f7d02bSMichael Lange       leafNodes[p].index = p;
1365f5bf2dbfSMichael Lange     }
1366f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
13671627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1368f5bf2dbfSMichael Lange       rootNodes[p].rank  = -3;
1369f5bf2dbfSMichael Lange       rootNodes[p].index = -3;
1370f5bf2dbfSMichael Lange     }
1371f5bf2dbfSMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr);
1372f5bf2dbfSMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, leafNodes, rootNodes, MPI_MAXLOC);CHKERRQ(ierr);
1373f5bf2dbfSMichael Lange   } else {
1374f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1375f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1376f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1377f5bf2dbfSMichael Lange     };
1378f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1379f5bf2dbfSMichael Lange       /* Write new local id into old location */
1380f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
1381f5bf2dbfSMichael Lange         rootNodes[roots[p].index].index = leaves[p];
1382f5bf2dbfSMichael Lange       }
1383f5bf2dbfSMichael Lange     }
1384f5bf2dbfSMichael Lange   }
1385f5bf2dbfSMichael Lange   ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1386f5bf2dbfSMichael Lange   ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1387f5bf2dbfSMichael Lange 
1388f5bf2dbfSMichael Lange   for (npointLeaves = 0, p = 0; p < nleaves; p++) {if (leafNodes[p].rank != rank) npointLeaves++;}
13891627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr);
13901627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr);
1391f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1392f5bf2dbfSMichael Lange     if (leafNodes[p].rank != rank) {
1393f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1394f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1395f5bf2dbfSMichael Lange       idx++;
1396f5bf2dbfSMichael Lange     }
1397f5bf2dbfSMichael Lange   }
1398f5bf2dbfSMichael Lange   ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr);
13991627f6ccSMichael Lange   ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr);
1400f5bf2dbfSMichael Lange   ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
1401f5bf2dbfSMichael Lange   ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr);
1402f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1403f5bf2dbfSMichael Lange }
1404f5bf2dbfSMichael Lange 
1405f5bf2dbfSMichael Lange #undef __FUNCT__
140615078cd4SMichael Lange #define __FUNCT__ "DMPlexMigrate"
140715078cd4SMichael Lange /*@C
140815078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
140915078cd4SMichael Lange 
141015078cd4SMichael Lange   Input Parameter:
141115078cd4SMichael Lange + dm       - The source DMPlex object
14121627f6ccSMichael Lange . sf       - The star forest communication context describing the migration pattern
141315078cd4SMichael Lange 
141415078cd4SMichael Lange   Output Parameter:
141515078cd4SMichael Lange - targetDM - The target DMPlex object
141615078cd4SMichael Lange 
1417b9f40539SMichael Lange   Level: intermediate
141815078cd4SMichael Lange 
141915078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
142015078cd4SMichael Lange @*/
1421b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
142215078cd4SMichael Lange {
1423b9f40539SMichael Lange   MPI_Comm               comm;
1424b9f40539SMichael Lange   PetscInt               dim, nroots;
1425b9f40539SMichael Lange   PetscSF                sfPoint;
142615078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1427ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
1428b9f40539SMichael Lange   PetscBool              flg;
142915078cd4SMichael Lange   PetscErrorCode         ierr;
143015078cd4SMichael Lange 
143115078cd4SMichael Lange   PetscFunctionBegin;
143215078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14331b858b30SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
1434b9f40539SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
143515078cd4SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
143615078cd4SMichael Lange   ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr);
143715078cd4SMichael Lange 
1438bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
1439b9f40539SMichael Lange   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
1440b9f40539SMichael Lange   ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
1441bfb0467fSMichael Lange   if (nroots >= 0) {
1442b9f40539SMichael Lange     IS                     isOriginal;
1443ac04eaf7SToby Isaac     PetscInt               n, size, nleaves;
1444ac04eaf7SToby Isaac     PetscInt              *numbering_orig, *numbering_new;
1445b9f40539SMichael Lange     /* Get the original point numbering */
1446b9f40539SMichael Lange     ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr);
1447b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal);CHKERRQ(ierr);
1448b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr);
1449b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1450b9f40539SMichael Lange     /* Convert to positive global numbers */
1451b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1452b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
1453b9f40539SMichael Lange     ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
1454b9f40539SMichael Lange     ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr);
1455b9f40539SMichael Lange     ierr = PetscSFBcastBegin(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr);
1456b9f40539SMichael Lange     ierr = PetscSFBcastEnd(sf, MPIU_INT, (PetscInt *) numbering_orig, numbering_new);CHKERRQ(ierr);
1457b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, (const PetscInt*) numbering_new, PETSC_OWN_POINTER, &ltogMigration);CHKERRQ(ierr);
1458b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1459b9f40539SMichael Lange     ierr = ISDestroy(&isOriginal);CHKERRQ(ierr);
146015078cd4SMichael Lange   } else {
1461bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
146215078cd4SMichael Lange     ierr = ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration);CHKERRQ(ierr);
146315078cd4SMichael Lange   }
1464b9f40539SMichael Lange   ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
1465b9f40539SMichael Lange   if (flg) {
1466b9f40539SMichael Lange     ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr);
1467b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr);
1468b9f40539SMichael Lange   }
146915078cd4SMichael Lange   /* Migrate DM data to target DM */
1470ac04eaf7SToby Isaac   ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
147115078cd4SMichael Lange   ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr);
147215078cd4SMichael Lange   ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr);
147315078cd4SMichael Lange   ierr = DMPlexDistributeSetupHybrid(dm, sf, ltogMigration, targetDM);CHKERRQ(ierr);
147408633170SToby Isaac   ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
1475ac04eaf7SToby Isaac   ierr = ISLocalToGlobalMappingDestroy(&ltogOriginal);CHKERRQ(ierr);
1476302440fdSBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&ltogMigration);CHKERRQ(ierr);
14771b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
147815078cd4SMichael Lange   PetscFunctionReturn(0);
147915078cd4SMichael Lange }
148015078cd4SMichael Lange 
148115078cd4SMichael Lange #undef __FUNCT__
148270034214SMatthew G. Knepley #define __FUNCT__ "DMPlexDistribute"
14833b8f15a2SMatthew G. Knepley /*@C
148470034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
148570034214SMatthew G. Knepley 
148670034214SMatthew G. Knepley   Not Collective
148770034214SMatthew G. Knepley 
148870034214SMatthew G. Knepley   Input Parameter:
148970034214SMatthew G. Knepley + dm  - The original DMPlex object
149070034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
149170034214SMatthew G. Knepley 
149270034214SMatthew G. Knepley   Output Parameter:
149370034214SMatthew G. Knepley + sf - The PetscSF used for point distribution
149470034214SMatthew G. Knepley - parallelMesh - The distributed DMPlex object, or NULL
149570034214SMatthew G. Knepley 
149670034214SMatthew G. Knepley   Note: If the mesh was not distributed, the return value is NULL.
149770034214SMatthew G. Knepley 
149870034214SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMPlexGetAdjacencyUseCone() and
149970034214SMatthew G. Knepley   DMPlexSetAdjacencyUseClosure(). They should choose the combination appropriate for the function
150070034214SMatthew G. Knepley   representation on the mesh.
150170034214SMatthew G. Knepley 
150270034214SMatthew G. Knepley   Level: intermediate
150370034214SMatthew G. Knepley 
150470034214SMatthew G. Knepley .keywords: mesh, elements
150570034214SMatthew G. Knepley .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure()
150670034214SMatthew G. Knepley @*/
150780cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
150870034214SMatthew G. Knepley {
150970034214SMatthew G. Knepley   MPI_Comm               comm;
151015078cd4SMichael Lange   PetscPartitioner       partitioner;
1511f8987ae8SMichael Lange   IS                     cellPart;
1512f8987ae8SMichael Lange   PetscSection           cellPartSection;
1513cf86098cSMatthew G. Knepley   DM                     dmCoord;
1514f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
151543f7d02bSMichael Lange   PetscSF                sfProcess, sfMigration, sfStratified, sfPoint;
151670034214SMatthew G. Knepley   PetscBool              flg;
151770034214SMatthew G. Knepley   PetscMPIInt            rank, numProcs, p;
151870034214SMatthew G. Knepley   PetscErrorCode         ierr;
151970034214SMatthew G. Knepley 
152070034214SMatthew G. Knepley   PetscFunctionBegin;
152170034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
152270034214SMatthew G. Knepley   if (sf) PetscValidPointer(sf,4);
152370034214SMatthew G. Knepley   PetscValidPointer(dmParallel,5);
152470034214SMatthew G. Knepley 
152570034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
152670034214SMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
152770034214SMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
152870034214SMatthew G. Knepley   ierr = MPI_Comm_size(comm, &numProcs);CHKERRQ(ierr);
152970034214SMatthew G. Knepley 
153070034214SMatthew G. Knepley   *dmParallel = NULL;
153170034214SMatthew G. Knepley   if (numProcs == 1) PetscFunctionReturn(0);
153270034214SMatthew G. Knepley 
153315078cd4SMichael Lange   /* Create cell partition */
153477623264SMatthew G. Knepley   ierr = PetscLogEventBegin(PETSCPARTITIONER_Partition,dm,0,0,0);CHKERRQ(ierr);
153577623264SMatthew G. Knepley   ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr);
153615078cd4SMichael Lange   ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr);
153715078cd4SMichael Lange   ierr = PetscPartitionerPartition(partitioner, dm, cellPartSection, &cellPart);CHKERRQ(ierr);
1538f8987ae8SMichael Lange   {
1539f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1540f8987ae8SMichael Lange     PetscInt proc, pStart, pEnd, npoints, poffset;
1541f8987ae8SMichael Lange     const PetscInt *points;
1542f8987ae8SMichael Lange     ierr = DMLabelCreate("Point Partition", &lblPartition);CHKERRQ(ierr);
1543f8987ae8SMichael Lange     ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr);
1544f8987ae8SMichael Lange     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1545f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
1546f8987ae8SMichael Lange       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1547f8987ae8SMichael Lange       ierr = PetscSectionGetOffset(cellPartSection, proc, &poffset);CHKERRQ(ierr);
1548f8987ae8SMichael Lange       for (p = poffset; p < poffset+npoints; p++) {
1549f8987ae8SMichael Lange         ierr = DMLabelSetValue(lblPartition, points[p], proc);CHKERRQ(ierr);
155070034214SMatthew G. Knepley       }
1551f8987ae8SMichael Lange     }
1552f8987ae8SMichael Lange     ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr);
1553f8987ae8SMichael Lange   }
1554f8987ae8SMichael Lange   ierr = DMPlexPartitionLabelClosure(dm, lblPartition);CHKERRQ(ierr);
1555f8987ae8SMichael Lange   {
1556f8987ae8SMichael Lange     /* Build a global process SF */
1557f8987ae8SMichael Lange     PetscSFNode *remoteProc;
1558f8987ae8SMichael Lange     ierr = PetscMalloc1(numProcs, &remoteProc);CHKERRQ(ierr);
1559f8987ae8SMichael Lange     for (p = 0; p < numProcs; ++p) {
1560f8987ae8SMichael Lange       remoteProc[p].rank  = p;
1561f8987ae8SMichael Lange       remoteProc[p].index = rank;
1562f8987ae8SMichael Lange     }
1563f8987ae8SMichael Lange     ierr = PetscSFCreate(comm, &sfProcess);CHKERRQ(ierr);
1564f8987ae8SMichael Lange     ierr = PetscObjectSetName((PetscObject) sfProcess, "Process SF");CHKERRQ(ierr);
1565f8987ae8SMichael Lange     ierr = PetscSFSetGraph(sfProcess, numProcs, numProcs, NULL, PETSC_OWN_POINTER, remoteProc, PETSC_OWN_POINTER);CHKERRQ(ierr);
1566f8987ae8SMichael Lange   }
1567f8987ae8SMichael Lange   ierr = DMLabelCreate("Point migration", &lblMigration);CHKERRQ(ierr);
1568f8987ae8SMichael Lange   ierr = DMPlexPartitionLabelInvert(dm, lblPartition, sfProcess, lblMigration);CHKERRQ(ierr);
1569302440fdSBarry Smith   ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr);
157043f7d02bSMichael Lange   /* Stratify the SF in case we are migrating an already parallel plex */
157143f7d02bSMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr);
157243f7d02bSMichael Lange   ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
157343f7d02bSMichael Lange   sfMigration = sfStratified;
1574f8987ae8SMichael Lange   ierr = PetscLogEventEnd(PETSCPARTITIONER_Partition,dm,0,0,0);CHKERRQ(ierr);
157570034214SMatthew G. Knepley   ierr = PetscOptionsHasName(((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
157670034214SMatthew G. Knepley   if (flg) {
1577f8987ae8SMichael Lange     ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1578f8987ae8SMichael Lange     ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
157970034214SMatthew G. Knepley   }
1580f8987ae8SMichael Lange 
158115078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
158270034214SMatthew G. Knepley   ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr);
158370034214SMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr);
1584b9f40539SMichael Lange   ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr);
158570034214SMatthew G. Knepley 
1586a157612eSMichael Lange   /* Build the point SF without overlap */
15871627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr);
1588f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr);
1589cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr);
1590cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1591f5bf2dbfSMichael Lange   if (flg) {ierr = PetscSFView(sfPoint, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);}
159270034214SMatthew G. Knepley 
1593a157612eSMichael Lange   if (overlap > 0) {
159415078cd4SMichael Lange     DM                 dmOverlap;
159515078cd4SMichael Lange     PetscInt           nroots, nleaves;
159615078cd4SMichael Lange     PetscSFNode       *newRemote;
159715078cd4SMichael Lange     const PetscSFNode *oldRemote;
159815078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1599a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
1600b9f40539SMichael Lange     ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr);
1601a157612eSMichael Lange     ierr = DMDestroy(dmParallel);CHKERRQ(ierr);
1602a157612eSMichael Lange     *dmParallel = dmOverlap;
1603c389ea9fSToby Isaac     if (flg) {
16043d822a50SMichael Lange       ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr);
160515078cd4SMichael Lange       ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr);
1606c389ea9fSToby Isaac     }
160743331d4aSMichael Lange 
1608f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
1609f8987ae8SMichael Lange     ierr = PetscSFGetGraph(sfMigration, &nroots, NULL, NULL, &oldRemote);CHKERRQ(ierr);
161015078cd4SMichael Lange     ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
161143331d4aSMichael Lange     ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr);
161215078cd4SMichael Lange     ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
161315078cd4SMichael Lange     ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
161415078cd4SMichael Lange     ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr);
161515078cd4SMichael Lange     ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
161615078cd4SMichael Lange     ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1617f8987ae8SMichael Lange     ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
161815078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1619c389ea9fSToby Isaac   }
1620bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
1621f8987ae8SMichael Lange   ierr = PetscSFDestroy(&sfProcess);CHKERRQ(ierr);
1622f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr);
1623f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr);
16244eca1733SMichael Lange   ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr);
16254eca1733SMichael Lange   ierr = ISDestroy(&cellPart);CHKERRQ(ierr);
1626721cbd76SMatthew G. Knepley   /* Copy BC */
1627721cbd76SMatthew G. Knepley   ierr = DMPlexCopyBoundary(dm, *dmParallel);CHKERRQ(ierr);
162866fe0bfeSMatthew G. Knepley   /* Create sfNatural */
162966fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
163066fe0bfeSMatthew G. Knepley     PetscSection section;
163166fe0bfeSMatthew G. Knepley 
163266fe0bfeSMatthew G. Knepley     ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
16330c1f158bSMatthew G. Knepley     ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr);
163466fe0bfeSMatthew G. Knepley   }
1635721cbd76SMatthew G. Knepley   /* Cleanup */
1636f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
1637f8987ae8SMichael Lange   else    {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);}
1638f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
163970034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
164070034214SMatthew G. Knepley   PetscFunctionReturn(0);
164170034214SMatthew G. Knepley }
1642a157612eSMichael Lange 
1643a157612eSMichael Lange #undef __FUNCT__
1644a157612eSMichael Lange #define __FUNCT__ "DMPlexDistributeOverlap"
1645a157612eSMichael Lange /*@C
1646a157612eSMichael Lange   DMPlexDistribute - Add partition overlap to a distributed non-overlapping DM.
1647a157612eSMichael Lange 
1648a157612eSMichael Lange   Not Collective
1649a157612eSMichael Lange 
1650a157612eSMichael Lange   Input Parameter:
1651a157612eSMichael Lange + dm  - The non-overlapping distrbuted DMPlex object
1652a157612eSMichael Lange - overlap - The overlap of partitions, 0 is the default
1653a157612eSMichael Lange 
1654a157612eSMichael Lange   Output Parameter:
1655a157612eSMichael Lange + sf - The PetscSF used for point distribution
1656a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1657a157612eSMichael Lange 
1658a157612eSMichael Lange   Note: If the mesh was not distributed, the return value is NULL.
1659a157612eSMichael Lange 
1660a157612eSMichael Lange   The user can control the definition of adjacency for the mesh using DMPlexGetAdjacencyUseCone() and
1661a157612eSMichael Lange   DMPlexSetAdjacencyUseClosure(). They should choose the combination appropriate for the function
1662a157612eSMichael Lange   representation on the mesh.
1663a157612eSMichael Lange 
1664a157612eSMichael Lange   Level: intermediate
1665a157612eSMichael Lange 
1666a157612eSMichael Lange .keywords: mesh, elements
1667a157612eSMichael Lange .seealso: DMPlexCreate(), DMPlexDistributeByFace(), DMPlexSetAdjacencyUseCone(), DMPlexSetAdjacencyUseClosure()
1668a157612eSMichael Lange @*/
1669b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1670a157612eSMichael Lange {
1671a157612eSMichael Lange   MPI_Comm               comm;
1672a157612eSMichael Lange   PetscMPIInt            rank;
1673a157612eSMichael Lange   PetscSection           rootSection, leafSection;
1674a157612eSMichael Lange   IS                     rootrank, leafrank;
1675cf86098cSMatthew G. Knepley   DM                     dmCoord;
1676a9f1d5b2SMichael Lange   DMLabel                lblOverlap;
1677f5bf2dbfSMichael Lange   PetscSF                sfOverlap, sfStratified, sfPoint;
1678a157612eSMichael Lange   PetscErrorCode         ierr;
1679a157612eSMichael Lange 
1680a157612eSMichael Lange   PetscFunctionBegin;
1681a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1682a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1683a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1684a157612eSMichael Lange 
16851b858b30SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1686a157612eSMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
1687a157612eSMichael Lange   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
1688a157612eSMichael Lange 
1689a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
1690a157612eSMichael Lange   ierr = PetscLogEventBegin(PETSCPARTITIONER_Partition,dm,0,0,0);CHKERRQ(ierr);
1691a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr);
1692a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr);
1693a157612eSMichael Lange   ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr);
1694a9f1d5b2SMichael Lange   ierr = DMPlexCreateOverlap(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr);
1695a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
1696a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr);
1697a9f1d5b2SMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr);
1698a9f1d5b2SMichael Lange   ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1699a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
1700a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr);
1701a9f1d5b2SMichael Lange   ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr);
1702a9f1d5b2SMichael Lange 
170315fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr);
170415fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr);
170515fff7beSMatthew G. Knepley   ierr = ISDestroy(&rootrank);CHKERRQ(ierr);
170615fff7beSMatthew G. Knepley   ierr = ISDestroy(&leafrank);CHKERRQ(ierr);
1707a157612eSMichael Lange   ierr = PetscLogEventEnd(PETSCPARTITIONER_Partition,dm,0,0,0);CHKERRQ(ierr);
1708a157612eSMichael Lange 
1709a157612eSMichael Lange   /* Build the overlapping DM */
1710a157612eSMichael Lange   ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr);
1711a157612eSMichael Lange   ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr);
1712a9f1d5b2SMichael Lange   ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr);
1713f5bf2dbfSMichael Lange   /* Build the new point SF */
17141627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
1715f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr);
1716cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr);
1717cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1718f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1719a157612eSMichael Lange   /* Cleanup overlap partition */
1720a9f1d5b2SMichael Lange   ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr);
1721a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
1722a9f1d5b2SMichael Lange   else    {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);}
17231b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1724a157612eSMichael Lange   PetscFunctionReturn(0);
1725a157612eSMichael Lange }
1726