1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()` 203c1f0c11SLawrence Mitchell @*/ 21d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetAdjacencyUser(DM dm, PetscErrorCode (*user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void *ctx) 22d71ae5a4SJacob Faibussowitsch { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 39ef1023bdSBarry Smith + user - The callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()` 453c1f0c11SLawrence Mitchell @*/ 46d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void **ctx) 47d71ae5a4SJacob Faibussowitsch { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 678b0b4c70SToby Isaac @*/ 68d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 69d71ae5a4SJacob Faibussowitsch { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *)dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 908b0b4c70SToby Isaac @*/ 91d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 92d71ae5a4SJacob Faibussowitsch { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *)dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97064a246eSJacob Faibussowitsch PetscValidBoolPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 102d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 103d71ae5a4SJacob Faibussowitsch { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley 10770034214SMatthew G. Knepley PetscFunctionBeginHot; 1089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 1104b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1114b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c - 1]; 11270034214SMatthew G. Knepley const PetscInt *support = NULL; 11370034214SMatthew G. Knepley PetscInt supportSize, s, q; 11470034214SMatthew G. Knepley 1159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 11770034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 118527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]), 0); ++q) { 11970034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12070034214SMatthew G. Knepley } 12163a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 12270034214SMatthew G. Knepley } 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley *adjSize = numAdj; 1253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12670034214SMatthew G. Knepley } 12770034214SMatthew G. Knepley 128d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 129d71ae5a4SJacob Faibussowitsch { 13070034214SMatthew G. Knepley const PetscInt *support = NULL; 13170034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13270034214SMatthew G. Knepley 13370034214SMatthew G. Knepley PetscFunctionBeginHot; 1349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 1359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 1364b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1374b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s - 1]; 13870034214SMatthew G. Knepley const PetscInt *cone = NULL; 13970034214SMatthew G. Knepley PetscInt coneSize, c, q; 14070034214SMatthew G. Knepley 1419566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 1429566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 14370034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 144527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]), 0); ++q) { 14570034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14670034214SMatthew G. Knepley } 14763a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley } 15070034214SMatthew G. Knepley *adjSize = numAdj; 1513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15270034214SMatthew G. Knepley } 15370034214SMatthew G. Knepley 154d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 155d71ae5a4SJacob Faibussowitsch { 15670034214SMatthew G. Knepley PetscInt *star = NULL; 15770034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 15870034214SMatthew G. Knepley 15970034214SMatthew G. Knepley PetscFunctionBeginHot; 1609566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star)); 16170034214SMatthew G. Knepley for (s = 0; s < starSize * 2; s += 2) { 16270034214SMatthew G. Knepley const PetscInt *closure = NULL; 16370034214SMatthew G. Knepley PetscInt closureSize, c, q; 16470034214SMatthew G. Knepley 1659566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure)); 16670034214SMatthew G. Knepley for (c = 0; c < closureSize * 2; c += 2) { 167527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]), 0); ++q) { 16870034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 16970034214SMatthew G. Knepley } 17063a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 17170034214SMatthew G. Knepley } 1729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure)); 17370034214SMatthew G. Knepley } 1749566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star)); 17570034214SMatthew G. Knepley *adjSize = numAdj; 1763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17770034214SMatthew G. Knepley } 17870034214SMatthew G. Knepley 179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 180d71ae5a4SJacob Faibussowitsch { 18179bad331SMatthew G. Knepley static PetscInt asiz = 0; 1828b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1838b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1848b0b4c70SToby Isaac PetscInt maxAdjSize; 1858b0b4c70SToby Isaac PetscSection aSec = NULL; 1868b0b4c70SToby Isaac IS aIS = NULL; 1878b0b4c70SToby Isaac const PetscInt *anchors; 1883c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 18970034214SMatthew G. Knepley 19070034214SMatthew G. Knepley PetscFunctionBeginHot; 1915b317d89SToby Isaac if (useAnchors) { 1929566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm, &aSec, &aIS)); 1938b0b4c70SToby Isaac if (aSec) { 1949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(aSec, &maxAnchors)); 19524c766afSToby Isaac maxAnchors = PetscMax(1, maxAnchors); 1969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(aSec, &aStart, &aEnd)); 1979566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS, &anchors)); 1988b0b4c70SToby Isaac } 1998b0b4c70SToby Isaac } 20079bad331SMatthew G. Knepley if (!*adj) { 20124c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20279bad331SMatthew G. Knepley 2039566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 2049566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 205412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 2069566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS)); 20724c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC, depth + 1) - 1) / (maxC - 1)) : depth + 1; 20824c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS, depth + 1) - 1) / (maxS - 1)) : depth + 1; 20924c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS, depth) * coneSeries, PetscPowInt(maxC, depth) * supportSeries); 2108b0b4c70SToby Isaac asiz *= maxAnchors; 21124c766afSToby Isaac asiz = PetscMin(asiz, pEnd - pStart); 2129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(asiz, adj)); 21379bad331SMatthew G. Knepley } 21479bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2158b0b4c70SToby Isaac maxAdjSize = *adjSize; 2163c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2179566063dSJacob Faibussowitsch PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx)); 2183c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 2199566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj)); 22070034214SMatthew G. Knepley } else if (useCone) { 2219566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj)); 22270034214SMatthew G. Knepley } else { 2239566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj)); 22470034214SMatthew G. Knepley } 2255b317d89SToby Isaac if (useAnchors && aSec) { 2268b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2278b0b4c70SToby Isaac PetscInt numAdj = origSize; 2288b0b4c70SToby Isaac PetscInt i = 0, j; 2298b0b4c70SToby Isaac PetscInt *orig = *adj; 2308b0b4c70SToby Isaac 2318b0b4c70SToby Isaac while (i < origSize) { 2328b0b4c70SToby Isaac PetscInt p = orig[i]; 2338b0b4c70SToby Isaac PetscInt aDof = 0; 2348b0b4c70SToby Isaac 23548a46eb9SPierre Jolivet if (p >= aStart && p < aEnd) PetscCall(PetscSectionGetDof(aSec, p, &aDof)); 2368b0b4c70SToby Isaac if (aDof) { 2378b0b4c70SToby Isaac PetscInt aOff; 2388b0b4c70SToby Isaac PetscInt s, q; 2398b0b4c70SToby Isaac 240ad540459SPierre Jolivet for (j = i + 1; j < numAdj; j++) orig[j - 1] = orig[j]; 2418b0b4c70SToby Isaac origSize--; 2428b0b4c70SToby Isaac numAdj--; 2439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec, p, &aOff)); 2448b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 245527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff + s]), 0); ++q) { 2468b0b4c70SToby Isaac if (anchors[aOff + s] == orig[q]) break; 2478b0b4c70SToby Isaac } 24863a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 2498b0b4c70SToby Isaac } 2509371c9d4SSatish Balay } else { 2518b0b4c70SToby Isaac i++; 2528b0b4c70SToby Isaac } 2538b0b4c70SToby Isaac } 2548b0b4c70SToby Isaac *adjSize = numAdj; 2559566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS, &anchors)); 2568b0b4c70SToby Isaac } 2573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25870034214SMatthew G. Knepley } 25970034214SMatthew G. Knepley 26070034214SMatthew G. Knepley /*@ 26170034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 26270034214SMatthew G. Knepley 26370034214SMatthew G. Knepley Input Parameters: 26470034214SMatthew G. Knepley + dm - The DM object 2656b867d5aSJose E. Roman - p - The point 26670034214SMatthew G. Knepley 2676b867d5aSJose E. Roman Input/Output Parameters: 2686b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE; 2696b867d5aSJose E. Roman on output the number of adjacent points 2706b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize; 2716b867d5aSJose E. Roman on output contains the adjacent points 27270034214SMatthew G. Knepley 27370034214SMatthew G. Knepley Level: advanced 27470034214SMatthew G. Knepley 27595452b02SPatrick Sanan Notes: 27695452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 27770034214SMatthew G. Knepley 278db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()` 27970034214SMatthew G. Knepley @*/ 280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 281d71ae5a4SJacob Faibussowitsch { 2821cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 28370034214SMatthew G. Knepley 28470034214SMatthew G. Knepley PetscFunctionBeginHot; 28570034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 286dadcf809SJacob Faibussowitsch PetscValidIntPointer(adjSize, 3); 28770034214SMatthew G. Knepley PetscValidPointer(adj, 4); 2889566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 2899566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 2909566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj)); 2913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29270034214SMatthew G. Knepley } 29308633170SToby Isaac 294b0a623aaSMatthew G. Knepley /*@ 295b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 296b0a623aaSMatthew G. Knepley 297d083f849SBarry Smith Collective on dm 298b0a623aaSMatthew G. Knepley 299b0a623aaSMatthew G. Knepley Input Parameters: 300b0a623aaSMatthew G. Knepley + dm - The DM 3016b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity 3026b867d5aSJose E. Roman . rootRankSection - 3036b867d5aSJose E. Roman . rootRanks - 3046b867d5aSJose E. Roman . leftRankSection - 3056b867d5aSJose E. Roman - leafRanks - 306b0a623aaSMatthew G. Knepley 307b0a623aaSMatthew G. Knepley Output Parameters: 308b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 309b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 310b0a623aaSMatthew G. Knepley 311b0a623aaSMatthew G. Knepley Level: developer 312b0a623aaSMatthew G. Knepley 313db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()` 314b0a623aaSMatthew G. Knepley @*/ 315d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 316d71ae5a4SJacob Faibussowitsch { 317b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 318b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 319b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 320b0a623aaSMatthew G. Knepley const PetscInt *nranks; 321b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 322b0a623aaSMatthew G. Knepley PetscBT neighbors; 323b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3249852e123SBarry Smith PetscMPIInt size, proc, rank; 325b0a623aaSMatthew G. Knepley 326b0a623aaSMatthew G. Knepley PetscFunctionBegin; 327b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 328b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 329ad540459SPierre Jolivet if (processRanks) PetscValidPointer(processRanks, 7); 330ad540459SPierre Jolivet if (sfProcess) PetscValidPointer(sfProcess, 8); 3319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 3329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 3339566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints)); 3349566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(size, &neighbors)); 3359566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(size, neighbors)); 336b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 3379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootRanks, &nranks)); 339b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 340b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 341b0a623aaSMatthew G. Knepley 3429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof)); 3439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff)); 3449566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n])); 345b0a623aaSMatthew G. Knepley } 3469566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootRanks, &nranks)); 347b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 3489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd)); 3499566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafRanks, &nranks)); 350b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 351b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 352b0a623aaSMatthew G. Knepley 3539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof)); 3549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff)); 3559566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n])); 356b0a623aaSMatthew G. Knepley } 3579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafRanks, &nranks)); 358b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 3593ba16761SJacob Faibussowitsch for (l = 0; l < numLeaves; ++l) PetscCall(PetscBTSet(neighbors, remotePoints[l].rank)); 360b0a623aaSMatthew G. Knepley /* Calculate edges */ 3613ba16761SJacob Faibussowitsch PetscCall(PetscBTClear(neighbors, rank)); 3629371c9d4SSatish Balay for (proc = 0, numNeighbors = 0; proc < size; ++proc) { 3639371c9d4SSatish Balay if (PetscBTLookup(neighbors, proc)) ++numNeighbors; 3649371c9d4SSatish Balay } 3659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &ranksNew)); 3669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &localPointsNew)); 3679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew)); 3689852e123SBarry Smith for (proc = 0, n = 0; proc < size; ++proc) { 369b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 370b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 371b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 372b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 373b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 374b0a623aaSMatthew G. Knepley ++n; 375b0a623aaSMatthew G. Knepley } 376b0a623aaSMatthew G. Knepley } 3779566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&neighbors)); 3789566063dSJacob Faibussowitsch if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks)); 3799566063dSJacob Faibussowitsch else PetscCall(PetscFree(ranksNew)); 380b0a623aaSMatthew G. Knepley if (sfProcess) { 3819566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess)); 3829566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*sfProcess, "Two-Sided Process SF")); 3839566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfProcess)); 3849566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER)); 385b0a623aaSMatthew G. Knepley } 3863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 387b0a623aaSMatthew G. Knepley } 388b0a623aaSMatthew G. Knepley 389b0a623aaSMatthew G. Knepley /*@ 390b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 391b0a623aaSMatthew G. Knepley 392d083f849SBarry Smith Collective on dm 393b0a623aaSMatthew G. Knepley 394b0a623aaSMatthew G. Knepley Input Parameter: 395b0a623aaSMatthew G. Knepley . dm - The DM 396b0a623aaSMatthew G. Knepley 397b0a623aaSMatthew G. Knepley Output Parameters: 398b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 399b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 400b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 401b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 402b0a623aaSMatthew G. Knepley 403b0a623aaSMatthew G. Knepley Level: developer 404b0a623aaSMatthew G. Knepley 405db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 406b0a623aaSMatthew G. Knepley @*/ 407d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 408d71ae5a4SJacob Faibussowitsch { 409b0a623aaSMatthew G. Knepley MPI_Comm comm; 410b0a623aaSMatthew G. Knepley PetscSF sfPoint; 411b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 412b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 413b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 414b0a623aaSMatthew G. Knepley PetscMPIInt rank; 415b0a623aaSMatthew G. Knepley 416b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4199566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4209566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 421b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 4229566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)rootSection, "Root Section")); 4239566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd)); 4249566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 4259566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 4269566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p - pStart])); 4279566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 428b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 4299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection, &nedges)); 4309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd - pStart, &myrank)); 4319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nedges, &remoterank)); 432b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) myrank[p] = rank; 4339566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank)); 4349566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank)); 4359566063dSJacob Faibussowitsch PetscCall(PetscFree(myrank)); 4369566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank)); 437b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 4389566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)leafSection, "Leaf Section")); 4399566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank)); 4403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 441b0a623aaSMatthew G. Knepley } 442b0a623aaSMatthew G. Knepley 443278397a0SMatthew G. Knepley /*@C 444c506a872SMatthew G. Knepley DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes 445b0a623aaSMatthew G. Knepley 446d083f849SBarry Smith Collective on dm 447b0a623aaSMatthew G. Knepley 448b0a623aaSMatthew G. Knepley Input Parameters: 449b0a623aaSMatthew G. Knepley + dm - The DM 45024d039d7SMichael Lange . levels - Number of overlap levels 451b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 452b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 453b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 454b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 455b0a623aaSMatthew G. Knepley 456064ec1f3Sprj- Output Parameter: 457b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 458b0a623aaSMatthew G. Knepley 459b0a623aaSMatthew G. Knepley Level: developer 460b0a623aaSMatthew G. Knepley 461c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 462b0a623aaSMatthew G. Knepley @*/ 463d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 464d71ae5a4SJacob Faibussowitsch { 465e540f424SMichael Lange MPI_Comm comm; 466b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 467874ddda9SLisandro Dalcin PetscSF sfPoint; 468b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 469b0a623aaSMatthew G. Knepley const PetscInt *local; 4701fd9873aSMichael Lange const PetscInt *nrank, *rrank; 471b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4721fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4739852e123SBarry Smith PetscMPIInt rank, size; 47431bc6364SLisandro Dalcin PetscBool flg; 475b0a623aaSMatthew G. Knepley 476b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4776ba1a4c7SVaclav Hapla *ovLabel = NULL; 4789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4813ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 4829566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 4839566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 484d1674c6dSMatthew Knepley if (!levels) { 485d1674c6dSMatthew Knepley /* Add owned points */ 4869566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 4879566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 489d1674c6dSMatthew Knepley } 4909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 4919566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 4929566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 493b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 494b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 495b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 496b0a623aaSMatthew G. Knepley 4979566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj)); 4989566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank)); 499b0a623aaSMatthew G. Knepley } 5009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootrank, &rrank)); 5019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafrank, &nrank)); 502b0a623aaSMatthew G. Knepley /* Handle roots */ 503b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 504b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 505b0a623aaSMatthew G. Knepley 506b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 507b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 5089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, p, &neighbors)); 509b0a623aaSMatthew G. Knepley if (neighbors) { 5109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection, p, &noff)); 5119566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 512b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 513b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff + n]; 514b0a623aaSMatthew G. Knepley 515b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5169566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 517b0a623aaSMatthew G. Knepley } 518b0a623aaSMatthew G. Knepley } 519b0a623aaSMatthew G. Knepley } 520b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 5219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootSection, p, &neighbors)); 522b0a623aaSMatthew G. Knepley if (!neighbors) continue; 5239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootSection, p, &noff)); 5249566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 525b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 526b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff + n]; 527b0a623aaSMatthew G. Knepley 528b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5299566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 530b0a623aaSMatthew G. Knepley } 531b0a623aaSMatthew G. Knepley } 5329566063dSJacob Faibussowitsch PetscCall(PetscFree(adj)); 5339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootrank, &rrank)); 5349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafrank, &nrank)); 53524d039d7SMichael Lange /* Add additional overlap levels */ 536be200f8dSMichael Lange for (l = 1; l < levels; l++) { 537be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 5389566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank)); 539be200f8dSMichael Lange /* Add next level of point donations to the label */ 5409566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank)); 541be200f8dSMichael Lange } 54226a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5439566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 5449566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg)); 545e540f424SMichael Lange if (flg) { 546825f8a23SLisandro Dalcin PetscViewer viewer; 5479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 5489566063dSJacob Faibussowitsch PetscCall(DMLabelView(ovAdjByRank, viewer)); 549b0a623aaSMatthew G. Knepley } 550874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 5519566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5529566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 553a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 5549566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 555e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 5569566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 5579566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 558e540f424SMichael Lange } 559e540f424SMichael Lange /* Clean up */ 5609566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&ovAdjByRank)); 5613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 562b0a623aaSMatthew G. Knepley } 56370034214SMatthew G. Knepley 564d71ae5a4SJacob Faibussowitsch static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank) 565d71ae5a4SJacob Faibussowitsch { 566c506a872SMatthew G. Knepley PetscInt neighbors, el; 567c506a872SMatthew G. Knepley 568c506a872SMatthew G. Knepley PetscFunctionBegin; 569c506a872SMatthew G. Knepley PetscCall(PetscSectionGetDof(section, p, &neighbors)); 570c506a872SMatthew G. Knepley if (neighbors) { 571c506a872SMatthew G. Knepley PetscInt *adj = NULL; 572c506a872SMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, noff, n, a; 573c506a872SMatthew G. Knepley PetscMPIInt rank; 574c506a872SMatthew G. Knepley 575c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 576c506a872SMatthew G. Knepley PetscCall(PetscSectionGetOffset(section, p, &noff)); 577c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 578c506a872SMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 579c506a872SMatthew G. Knepley const PetscInt remoteRank = ranks[noff + n]; 580c506a872SMatthew G. Knepley 581c506a872SMatthew G. Knepley if (remoteRank == rank) continue; 582c506a872SMatthew G. Knepley for (a = 0; a < adjSize; ++a) { 583c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 584c506a872SMatthew G. Knepley 585c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 586c506a872SMatthew G. Knepley PetscInt exVal; 587c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 5889371c9d4SSatish Balay if (exVal == exValue[el]) { 5899371c9d4SSatish Balay insert = PETSC_FALSE; 5909371c9d4SSatish Balay break; 5919371c9d4SSatish Balay } 592c506a872SMatthew G. Knepley } 593c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 594c506a872SMatthew G. Knepley } 595c506a872SMatthew G. Knepley } 596f88a03deSMatthew G. Knepley PetscCall(PetscFree(adj)); 597c506a872SMatthew G. Knepley } 5983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 599c506a872SMatthew G. Knepley } 600c506a872SMatthew G. Knepley 601c506a872SMatthew G. Knepley /*@C 602c506a872SMatthew G. Knepley DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes 603c506a872SMatthew G. Knepley 604c506a872SMatthew G. Knepley Collective on dm 605c506a872SMatthew G. Knepley 606c506a872SMatthew G. Knepley Input Parameters: 607c506a872SMatthew G. Knepley + dm - The DM 608c506a872SMatthew G. Knepley . numLabels - The number of labels to draw candidate points from 609c506a872SMatthew G. Knepley . label - An array of labels containing candidate points 610c506a872SMatthew G. Knepley . value - An array of label values marking the candidate points 611c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion 612c506a872SMatthew G. Knepley . exLabel - An array of labels indicating points to be excluded, or NULL 613c506a872SMatthew G. Knepley . exValue - An array of label values to be excluded, or NULL 614c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point 615c506a872SMatthew G. Knepley . rootrank - The rank of each edge into the root point 616c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 617c506a872SMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 618c506a872SMatthew G. Knepley 619c506a872SMatthew G. Knepley Output Parameter: 620c506a872SMatthew G. Knepley . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 621c506a872SMatthew G. Knepley 622c506a872SMatthew G. Knepley Note: 623c506a872SMatthew G. Knepley The candidate points are only added to the overlap if they are adjacent to a shared point 624c506a872SMatthew G. Knepley 625c506a872SMatthew G. Knepley Level: developer 626c506a872SMatthew G. Knepley 627c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 628c506a872SMatthew G. Knepley @*/ 629d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 630d71ae5a4SJacob Faibussowitsch { 631c506a872SMatthew G. Knepley MPI_Comm comm; 632c506a872SMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 633c506a872SMatthew G. Knepley PetscSF sfPoint; 634c506a872SMatthew G. Knepley const PetscSFNode *remote; 635c506a872SMatthew G. Knepley const PetscInt *local; 636c506a872SMatthew G. Knepley const PetscInt *nrank, *rrank; 637c506a872SMatthew G. Knepley PetscInt *adj = NULL; 638c506a872SMatthew G. Knepley PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l, el; 639c506a872SMatthew G. Knepley PetscMPIInt rank, size; 640c506a872SMatthew G. Knepley PetscBool flg; 641c506a872SMatthew G. Knepley 642c506a872SMatthew G. Knepley PetscFunctionBegin; 643c506a872SMatthew G. Knepley *ovLabel = NULL; 644c506a872SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 645c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 646c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 6473ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 648c506a872SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sfPoint)); 649c506a872SMatthew G. Knepley PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 650c506a872SMatthew G. Knepley PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 651c506a872SMatthew G. Knepley PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 652c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 653c506a872SMatthew G. Knepley PetscCall(ISGetIndices(rootrank, &rrank)); 654c506a872SMatthew G. Knepley PetscCall(ISGetIndices(leafrank, &nrank)); 655c506a872SMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 656c506a872SMatthew G. Knepley IS valIS; 657c506a872SMatthew G. Knepley const PetscInt *points; 658c506a872SMatthew G. Knepley PetscInt n; 659c506a872SMatthew G. Knepley 660c506a872SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS)); 661c506a872SMatthew G. Knepley if (!valIS) continue; 662c506a872SMatthew G. Knepley PetscCall(ISGetIndices(valIS, &points)); 663c506a872SMatthew G. Knepley PetscCall(ISGetLocalSize(valIS, &n)); 664c506a872SMatthew G. Knepley for (PetscInt i = 0; i < n; ++i) { 665c506a872SMatthew G. Knepley const PetscInt p = points[i]; 666c506a872SMatthew G. Knepley 667c506a872SMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 668c506a872SMatthew G. Knepley PetscInt loc, adjSize = PETSC_DETERMINE; 669c506a872SMatthew G. Knepley 670c506a872SMatthew G. Knepley /* Handle leaves: shared with the root point */ 671c506a872SMatthew G. Knepley if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc)); 672c506a872SMatthew G. Knepley else loc = (p >= 0 && p < nleaves) ? p : -1; 673c506a872SMatthew G. Knepley if (loc >= 0) { 674c506a872SMatthew G. Knepley const PetscInt remoteRank = remote[loc].rank; 675c506a872SMatthew G. Knepley 676c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 677c506a872SMatthew G. Knepley for (PetscInt a = 0; a < adjSize; ++a) { 678c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 679c506a872SMatthew G. Knepley 680c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 681c506a872SMatthew G. Knepley PetscInt exVal; 682c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 6839371c9d4SSatish Balay if (exVal == exValue[el]) { 6849371c9d4SSatish Balay insert = PETSC_FALSE; 6859371c9d4SSatish Balay break; 6869371c9d4SSatish Balay } 687c506a872SMatthew G. Knepley } 688c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 689c506a872SMatthew G. Knepley } 690c506a872SMatthew G. Knepley } 691c506a872SMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 6923ba16761SJacob Faibussowitsch PetscCall(HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank)); 693c506a872SMatthew G. Knepley } 694c506a872SMatthew G. Knepley /* Roots are shared with leaves */ 6953ba16761SJacob Faibussowitsch PetscCall(HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank)); 696c506a872SMatthew G. Knepley } 697c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(valIS, &points)); 698c506a872SMatthew G. Knepley PetscCall(ISDestroy(&valIS)); 699c506a872SMatthew G. Knepley } 700c506a872SMatthew G. Knepley PetscCall(PetscFree(adj)); 701c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(rootrank, &rrank)); 702c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(leafrank, &nrank)); 703c506a872SMatthew G. Knepley /* We require the closure in the overlap */ 704c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 705c506a872SMatthew G. Knepley PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg)); 706c506a872SMatthew G. Knepley if (flg) { 707c506a872SMatthew G. Knepley PetscViewer viewer; 708c506a872SMatthew G. Knepley PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 709c506a872SMatthew G. Knepley PetscCall(DMLabelView(ovAdjByRank, viewer)); 710c506a872SMatthew G. Knepley } 711c506a872SMatthew G. Knepley /* Invert sender to receiver label */ 712c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 713c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 714c506a872SMatthew G. Knepley /* Add owned points, except for shared local points */ 715c506a872SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 716c506a872SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 717c506a872SMatthew G. Knepley PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 718c506a872SMatthew G. Knepley PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 719c506a872SMatthew G. Knepley } 720c506a872SMatthew G. Knepley /* Clean up */ 721c506a872SMatthew G. Knepley PetscCall(DMLabelDestroy(&ovAdjByRank)); 7223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 723c506a872SMatthew G. Knepley } 724c506a872SMatthew G. Knepley 72524cc2ca5SMatthew G. Knepley /*@C 72624cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 72724cc2ca5SMatthew G. Knepley 728d083f849SBarry Smith Collective on dm 72924cc2ca5SMatthew G. Knepley 73024cc2ca5SMatthew G. Knepley Input Parameters: 73124cc2ca5SMatthew G. Knepley + dm - The DM 73224cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 73324cc2ca5SMatthew G. Knepley 734064ec1f3Sprj- Output Parameter: 735a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 73624cc2ca5SMatthew G. Knepley 73724cc2ca5SMatthew G. Knepley Level: developer 73824cc2ca5SMatthew G. Knepley 739db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()` 74024cc2ca5SMatthew G. Knepley @*/ 741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 742d71ae5a4SJacob Faibussowitsch { 74346f9b1c3SMichael Lange MPI_Comm comm; 7449852e123SBarry Smith PetscMPIInt rank, size; 74546f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 74646f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 74746f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 74846f9b1c3SMichael Lange PetscSFNode *iremote; 74946f9b1c3SMichael Lange PetscSF pointSF; 75046f9b1c3SMichael Lange const PetscInt *sharedLocal; 75146f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 75246f9b1c3SMichael Lange 75346f9b1c3SMichael Lange PetscFunctionBegin; 75446f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 7569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 7579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 7589566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 75946f9b1c3SMichael Lange 76046f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 7619566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote)); 7629566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 76346f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 7649566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 76546f9b1c3SMichael Lange for (p = pStart; p < pEnd; p++) pointDepths[p] = d; 76646f9b1c3SMichael Lange } 76746f9b1c3SMichael Lange for (p = 0; p < nleaves; p++) remoteDepths[p] = -1; 7689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE)); 7699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE)); 77046f9b1c3SMichael Lange 7712d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 7729566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim + 1, &depthRecv, dim + 1, &depthShift, dim + 1, &depthIdx)); 77346f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) depthRecv[d] = 0; 77446f9b1c3SMichael Lange for (p = 0; p < nleaves; p++) depthRecv[remoteDepths[p]]++; 77546f9b1c3SMichael Lange depthShift[dim] = 0; 77646f9b1c3SMichael Lange for (d = 0; d < dim; d++) depthShift[d] = depthRecv[dim]; 77746f9b1c3SMichael Lange for (d = 1; d < dim; d++) depthShift[d] += depthRecv[0]; 77846f9b1c3SMichael Lange for (d = dim - 2; d > 0; d--) depthShift[d] += depthRecv[d + 1]; 77946f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 7809566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 78146f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 78246f9b1c3SMichael Lange } 78346f9b1c3SMichael Lange 78446f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 7859566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 78646f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 7879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &ilocal)); 7889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &iremote)); 78946f9b1c3SMichael Lange /* First map local points to themselves */ 79046f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 7919566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 79246f9b1c3SMichael Lange for (p = pStart; p < pEnd; p++) { 79346f9b1c3SMichael Lange point = p + depthShift[d]; 79446f9b1c3SMichael Lange ilocal[point] = point; 79546f9b1c3SMichael Lange iremote[point].index = p; 79646f9b1c3SMichael Lange iremote[point].rank = rank; 79746f9b1c3SMichael Lange depthIdx[d]++; 79846f9b1c3SMichael Lange } 79946f9b1c3SMichael Lange } 80046f9b1c3SMichael Lange 80146f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 8029566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &pointSF)); 8039566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote)); 80446f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 8059566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 80646f9b1c3SMichael Lange for (p = 0; p < numSharedPoints; p++) { 80746f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 80846f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 80946f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 81046f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 81146f9b1c3SMichael Lange } 81246f9b1c3SMichael Lange } 81346f9b1c3SMichael Lange } 81446f9b1c3SMichael Lange 81546f9b1c3SMichael Lange /* Now add the incoming overlap points */ 81646f9b1c3SMichael Lange for (p = 0; p < nleaves; p++) { 81746f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 81846f9b1c3SMichael Lange ilocal[point] = point; 81946f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 82046f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 82146f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 82246f9b1c3SMichael Lange } 8239566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths, remoteDepths)); 82446f9b1c3SMichael Lange 8259566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 8269566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Overlap Migration SF")); 8279566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*migrationSF)); 8289566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, pEnd - pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 83046f9b1c3SMichael Lange 8319566063dSJacob Faibussowitsch PetscCall(PetscFree3(depthRecv, depthShift, depthIdx)); 8323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83370034214SMatthew G. Knepley } 83470034214SMatthew G. Knepley 835a9f1d5b2SMichael Lange /*@ 836f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 837a9f1d5b2SMichael Lange 838064ec1f3Sprj- Input Parameters: 839a9f1d5b2SMichael Lange + dm - The DM 840a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 841a9f1d5b2SMichael Lange 842a9f1d5b2SMichael Lange Output Parameter: 843a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 844a9f1d5b2SMichael Lange 845412e9a14SMatthew G. Knepley Note: 846412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 847412e9a14SMatthew G. Knepley 848a9f1d5b2SMichael Lange Level: developer 849a9f1d5b2SMichael Lange 850db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 851a9f1d5b2SMichael Lange @*/ 852d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 853d71ae5a4SJacob Faibussowitsch { 854a9f1d5b2SMichael Lange MPI_Comm comm; 8559852e123SBarry Smith PetscMPIInt rank, size; 856412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 857412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 858412e9a14SMatthew G. Knepley PetscInt *ilocal; 859a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 860412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 861a9f1d5b2SMichael Lange const PetscSFNode *iremote; 862a9f1d5b2SMichael Lange 863a9f1d5b2SMichael Lange PetscFunctionBegin; 864a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 8669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 8679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 8689566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &ldepth)); 8699566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8701c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm)); 87163a3b9bcSJacob Faibussowitsch PetscCheck(!(ldepth >= 0) || !(depth != ldepth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth); 8729566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF, dm, 0, 0, 0)); 873a9f1d5b2SMichael Lange 874a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 8759566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote)); 8769566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 8777fab53ddSMatthew G. Knepley for (d = 0; d < depth + 1; ++d) { 8789566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 879f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 880412e9a14SMatthew G. Knepley DMPolytopeType ct; 881f0e73a3dSToby Isaac 8829566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 883412e9a14SMatthew G. Knepley pointDepths[p].index = d; 884412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 885f0e73a3dSToby Isaac } 886412e9a14SMatthew G. Knepley } 8879371c9d4SSatish Balay for (p = 0; p < nleaves; ++p) { 8889371c9d4SSatish Balay remoteDepths[p].index = -1; 8899371c9d4SSatish Balay remoteDepths[p].rank = -1; 8909371c9d4SSatish Balay } 8919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE)); 8929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE)); 893412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 8949566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(depth + 1, &depthRecv, depth + 1, &depthShift, depth + 1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx)); 895412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 896412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 897412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 898412e9a14SMatthew G. Knepley } else { 899412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 900412e9a14SMatthew G. Knepley } 901412e9a14SMatthew G. Knepley } 902412e9a14SMatthew G. Knepley { 903412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 904412e9a14SMatthew G. Knepley 9058238f61eSMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) 9068238f61eSMatthew G. Knepley Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells 9078238f61eSMatthew G. Knepley */ 9089371c9d4SSatish Balay depths[0] = depth; 9099371c9d4SSatish Balay depths[1] = 0; 9109371c9d4SSatish Balay depths[2] = depth - 1; 9119371c9d4SSatish Balay depths[3] = 1; 9129371c9d4SSatish Balay dims[0] = dim; 9139371c9d4SSatish Balay dims[1] = 0; 9149371c9d4SSatish Balay dims[2] = dim - 1; 9159371c9d4SSatish Balay dims[3] = 1; 916412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 917412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 918412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 919412e9a14SMatthew G. Knepley 920412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 9218238f61eSMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType)c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue; 922412e9a14SMatthew G. Knepley ctShift[c] = shift; 923412e9a14SMatthew G. Knepley shift += ctRecv[c]; 924412e9a14SMatthew G. Knepley } 925412e9a14SMatthew G. Knepley depthShift[dep] = shift; 926412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 927412e9a14SMatthew G. Knepley } 928412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 929412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType)c); 930412e9a14SMatthew G. Knepley 9318238f61eSMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) { 932412e9a14SMatthew G. Knepley ctShift[c] = shift; 933412e9a14SMatthew G. Knepley shift += ctRecv[c]; 934412e9a14SMatthew G. Knepley } 935412e9a14SMatthew G. Knepley } 936412e9a14SMatthew G. Knepley } 937a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 9389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &ilocal)); 9397fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 940412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 941412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType)remoteDepths[p].rank; 9427fab53ddSMatthew G. Knepley 943412e9a14SMatthew G. Knepley if ((PetscInt)ct < 0) { 9447fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 945412e9a14SMatthew G. Knepley ++depthIdx[dep]; 946412e9a14SMatthew G. Knepley } else { 947412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 948412e9a14SMatthew G. Knepley ++ctIdx[ct]; 949412e9a14SMatthew G. Knepley } 950a9f1d5b2SMichael Lange } 9519566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 9529566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Migration SF")); 9539566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 9549566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths, remoteDepths)); 9559566063dSJacob Faibussowitsch PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx)); 9569566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF, dm, 0, 0, 0)); 9573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 958a9f1d5b2SMichael Lange } 959a9f1d5b2SMichael Lange 96070034214SMatthew G. Knepley /*@ 96170034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 96270034214SMatthew G. Knepley 963d083f849SBarry Smith Collective on dm 96470034214SMatthew G. Knepley 96570034214SMatthew G. Knepley Input Parameters: 96670034214SMatthew G. Knepley + dm - The DMPlex object 96770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 96870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 969cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 97070034214SMatthew G. Knepley 97170034214SMatthew G. Knepley Output Parameters: 97270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 973cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 97470034214SMatthew G. Knepley 97570034214SMatthew G. Knepley Level: developer 97670034214SMatthew G. Knepley 977db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()` 97870034214SMatthew G. Knepley @*/ 979d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 980d71ae5a4SJacob Faibussowitsch { 98170034214SMatthew G. Knepley PetscSF fieldSF; 98270034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 98370034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 98470034214SMatthew G. Knepley 98570034214SMatthew G. Knepley PetscFunctionBegin; 9869566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0)); 9879566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 98870034214SMatthew G. Knepley 9899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 9909566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE)); 9919566063dSJacob Faibussowitsch PetscCall(VecSetType(newVec, dm->vectype)); 99270034214SMatthew G. Knepley 9939566063dSJacob Faibussowitsch PetscCall(VecGetArray(originalVec, &originalValues)); 9949566063dSJacob Faibussowitsch PetscCall(VecGetArray(newVec, &newValues)); 9959566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 9969566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 9979566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE)); 9989566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE)); 9999566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newVec, &newValues)); 10019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(originalVec, &originalValues)); 10029566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0)); 10033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 100470034214SMatthew G. Knepley } 100570034214SMatthew G. Knepley 100670034214SMatthew G. Knepley /*@ 100770034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 100870034214SMatthew G. Knepley 1009d083f849SBarry Smith Collective on dm 101070034214SMatthew G. Knepley 101170034214SMatthew G. Knepley Input Parameters: 101270034214SMatthew G. Knepley + dm - The DMPlex object 101370034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 101470034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 101570034214SMatthew G. Knepley - originalIS - The existing data 101670034214SMatthew G. Knepley 101770034214SMatthew G. Knepley Output Parameters: 101870034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 101970034214SMatthew G. Knepley - newIS - The new data 102070034214SMatthew G. Knepley 102170034214SMatthew G. Knepley Level: developer 102270034214SMatthew G. Knepley 1023db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()` 102470034214SMatthew G. Knepley @*/ 1025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 1026d71ae5a4SJacob Faibussowitsch { 102770034214SMatthew G. Knepley PetscSF fieldSF; 102870034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 102970034214SMatthew G. Knepley const PetscInt *originalValues; 103070034214SMatthew G. Knepley 103170034214SMatthew G. Knepley PetscFunctionBegin; 10329566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0)); 10339566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 103470034214SMatthew G. Knepley 10359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSize, &newValues)); 103770034214SMatthew G. Knepley 10389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(originalIS, &originalValues)); 10399566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10409566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE)); 10429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE)); 10439566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(originalIS, &originalValues)); 10459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS)); 10469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0)); 10473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104870034214SMatthew G. Knepley } 104970034214SMatthew G. Knepley 105070034214SMatthew G. Knepley /*@ 105170034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 105270034214SMatthew G. Knepley 1053d083f849SBarry Smith Collective on dm 105470034214SMatthew G. Knepley 105570034214SMatthew G. Knepley Input Parameters: 105670034214SMatthew G. Knepley + dm - The DMPlex object 105770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 105870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 105970034214SMatthew G. Knepley . datatype - The type of data 106070034214SMatthew G. Knepley - originalData - The existing data 106170034214SMatthew G. Knepley 106270034214SMatthew G. Knepley Output Parameters: 106370034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 106470034214SMatthew G. Knepley - newData - The new data 106570034214SMatthew G. Knepley 106670034214SMatthew G. Knepley Level: developer 106770034214SMatthew G. Knepley 1068db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()` 106970034214SMatthew G. Knepley @*/ 1070d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 1071d71ae5a4SJacob Faibussowitsch { 107270034214SMatthew G. Knepley PetscSF fieldSF; 107370034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 107470034214SMatthew G. Knepley PetscMPIInt dataSize; 107570034214SMatthew G. Knepley 107670034214SMatthew G. Knepley PetscFunctionBegin; 10779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeData, dm, 0, 0, 0)); 10789566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 107970034214SMatthew G. Knepley 10809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(datatype, &dataSize)); 10829566063dSJacob Faibussowitsch PetscCall(PetscMalloc(fieldSize * dataSize, newData)); 108370034214SMatthew G. Knepley 10849566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10859566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData, MPI_REPLACE)); 10879566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData, MPI_REPLACE)); 10889566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10899566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeData, dm, 0, 0, 0)); 10903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 109170034214SMatthew G. Knepley } 109270034214SMatthew G. Knepley 1093d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1094d71ae5a4SJacob Faibussowitsch { 1095cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex *)(dmParallel)->data; 1096cc71bff1SMichael Lange MPI_Comm comm; 1097cc71bff1SMichael Lange PetscSF coneSF; 1098cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 1099ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 1100cc71bff1SMichael Lange PetscBool flg; 1101cc71bff1SMichael Lange 1102cc71bff1SMichael Lange PetscFunctionBegin; 1103cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11040c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 11059566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones, dm, 0, 0, 0)); 1106cc71bff1SMichael Lange /* Distribute cone section */ 11079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &originalConeSection)); 11099566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection)); 11109566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection)); 11119566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmParallel)); 1112cc71bff1SMichael Lange /* Communicate and renumber cones */ 11139566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF)); 11149566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 11159566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dm, &cones)); 1116ac04eaf7SToby Isaac if (original) { 1117ac04eaf7SToby Isaac PetscInt numCones; 1118ac04eaf7SToby Isaac 11199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(originalConeSection, &numCones)); 11209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numCones, &globCones)); 11219566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones)); 1122367003a6SStefano Zampini } else { 1123ac04eaf7SToby Isaac globCones = cones; 1124ac04eaf7SToby Isaac } 11259566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dmParallel, &newCones)); 11269566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE)); 11279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE)); 11281baa6e33SBarry Smith if (original) PetscCall(PetscFree(globCones)); 11299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize)); 11309566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones)); 113176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11323533c52bSMatthew G. Knepley PetscInt p; 11333533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 11343533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 11359371c9d4SSatish Balay if (newCones[p] < 0) { 11369371c9d4SSatish Balay valid = PETSC_FALSE; 11379371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank, p)); 11389371c9d4SSatish Balay } 11393533c52bSMatthew G. Knepley } 114028b400f6SJacob Faibussowitsch PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11413533c52bSMatthew G. Knepley } 11429566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-cones_view", &flg)); 1143cc71bff1SMichael Lange if (flg) { 11449566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Cone Section:\n")); 11459566063dSJacob Faibussowitsch PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm))); 11469566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n")); 11479566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm))); 11489566063dSJacob Faibussowitsch PetscCall(PetscSFView(coneSF, NULL)); 1149cc71bff1SMichael Lange } 11509566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dm, &cones)); 11519566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones)); 11529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE)); 11539566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE)); 11549566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coneSF)); 11559566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones, dm, 0, 0, 0)); 1156eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1157cc71bff1SMichael Lange { 1158cc71bff1SMichael Lange PetscInt pStart, pEnd; 1159cc71bff1SMichael Lange 11609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd)); 11619566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd)); 1162cc71bff1SMichael Lange } 11639566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(dmParallel)); 11649566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(dmParallel)); 11651cf84007SMatthew G. Knepley { 11661cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 11671cf84007SMatthew G. Knepley 11689566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 11699566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 11709566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 11719566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 11721cf84007SMatthew G. Knepley } 11733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1174cc71bff1SMichael Lange } 1175cc71bff1SMichael Lange 1176d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 1177d71ae5a4SJacob Faibussowitsch { 11780df0e737SMichael Lange MPI_Comm comm; 11799318fe57SMatthew G. Knepley DM cdm, cdmParallel; 11800df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 11810df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 11820df0e737SMichael Lange PetscInt bs; 11830df0e737SMichael Lange const char *name; 11844fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 11850df0e737SMichael Lange 11860df0e737SMichael Lange PetscFunctionBegin; 11870df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11880c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 11890df0e737SMichael Lange 11909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11916858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(dm, &cdm)); 11926858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel)); 11936858538eSMatthew G. Knepley PetscCall(DMCopyDisc(cdm, cdmParallel)); 11949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &originalCoordSection)); 11959566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection)); 11969566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates)); 11970df0e737SMichael Lange if (originalCoordinates) { 11989566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 11999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name)); 12009566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name)); 12010df0e737SMichael Lange 12029566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12039566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates)); 12049566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12059566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, bs)); 12069566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 12070df0e737SMichael Lange } 12086858538eSMatthew G. Knepley 12096858538eSMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12104fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 12114fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(dmParallel, maxCell, Lstart, L)); 12126858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(dm, &cdm)); 12136858538eSMatthew G. Knepley if (cdm) { 12146858538eSMatthew G. Knepley PetscCall(DMClone(dmParallel, &cdmParallel)); 12156858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateDM(dmParallel, cdmParallel)); 12169566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(cdm, cdmParallel)); 12176858538eSMatthew G. Knepley PetscCall(DMDestroy(&cdmParallel)); 12186858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateSection(dm, &originalCoordSection)); 12196858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &originalCoordinates)); 12206858538eSMatthew G. Knepley PetscCall(PetscSectionCreate(comm, &newCoordSection)); 12216858538eSMatthew G. Knepley if (originalCoordinates) { 12226858538eSMatthew G. Knepley PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 12236858538eSMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name)); 12246858538eSMatthew G. Knepley PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name)); 12256858538eSMatthew G. Knepley 12266858538eSMatthew G. Knepley PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12276858538eSMatthew G. Knepley PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12286858538eSMatthew G. Knepley PetscCall(VecSetBlockSize(newCoordinates, bs)); 12296858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateSection(dmParallel, bs, newCoordSection)); 12306858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(dmParallel, newCoordinates)); 12316858538eSMatthew G. Knepley PetscCall(VecDestroy(&newCoordinates)); 12326858538eSMatthew G. Knepley } 12336858538eSMatthew G. Knepley PetscCall(PetscSectionDestroy(&newCoordSection)); 12346858538eSMatthew G. Knepley } 12353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12360df0e737SMichael Lange } 12370df0e737SMichael Lange 1238d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 1239d71ae5a4SJacob Faibussowitsch { 1240df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 12410df0e737SMichael Lange MPI_Comm comm; 12427980c9d4SMatthew G. Knepley DMLabel depthLabel; 12430df0e737SMichael Lange PetscMPIInt rank; 12447980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1245df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1246df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 12470df0e737SMichael Lange 12480df0e737SMichael Lange PetscFunctionBegin; 12490df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12500c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12510c86c063SLisandro Dalcin 12529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels, dm, 0, 0, 0)); 12539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 12550df0e737SMichael Lange 1256df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 12579566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 12589566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 12599566063dSJacob Faibussowitsch if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject)depthLabel, &depthState)); 1260df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 12611c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm)); 1262df0420ecSMatthew G. Knepley if (sendDepth) { 12639566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel)); 12649566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE)); 1265df0420ecSMatthew G. Knepley } 1266d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 12679566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLocalLabels)); 1268d995df53SMatthew G. Knepley numLabels = numLocalLabels; 12699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm)); 1270627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 12715d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1272bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 127383e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1274d67d17b1SMatthew G. Knepley const char *name = NULL; 12750df0e737SMichael Lange 1276d67d17b1SMatthew G. Knepley if (hasLabels) { 12779566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 12780df0e737SMichael Lange /* Skip "depth" because it is recreated */ 12799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 12809566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 1281bbcf679cSJacob Faibussowitsch } else { 1282bbcf679cSJacob Faibussowitsch isDepth = PETSC_FALSE; 1283d67d17b1SMatthew G. Knepley } 12849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm)); 128583e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 12869566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, migrationSF, &labelNew)); 128783e10cb3SLisandro Dalcin if (isDepth) { 12887980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 12897980c9d4SMatthew G. Knepley PetscInt gdepth; 12907980c9d4SMatthew G. Knepley 12911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm)); 129263a3b9bcSJacob Faibussowitsch PetscCheck(!(depth >= 0) || !(gdepth != depth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth); 12937980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 12947980c9d4SMatthew G. Knepley PetscBool has; 12957980c9d4SMatthew G. Knepley 12969566063dSJacob Faibussowitsch PetscCall(DMLabelHasStratum(labelNew, d, &has)); 12979566063dSJacob Faibussowitsch if (!has) PetscCall(DMLabelAddStratum(labelNew, d)); 12987980c9d4SMatthew G. Knepley } 12997980c9d4SMatthew G. Knepley } 13009566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmParallel, labelNew)); 130183e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 13029566063dSJacob Faibussowitsch if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput)); 13031c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm)); 13049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)labelNew, &name)); 13059566063dSJacob Faibussowitsch PetscCall(DMSetLabelOutput(dmParallel, name, isOutput)); 13069566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&labelNew)); 13070df0e737SMichael Lange } 1308695799ffSMatthew G. Knepley { 1309695799ffSMatthew G. Knepley DMLabel ctLabel; 1310695799ffSMatthew G. Knepley 1311695799ffSMatthew G. Knepley // Reset label for fast lookup 1312695799ffSMatthew G. Knepley PetscCall(DMPlexGetCellTypeLabel(dmParallel, &ctLabel)); 1313695799ffSMatthew G. Knepley PetscCall(DMLabelMakeAllInvalid_Internal(ctLabel)); 1314695799ffSMatthew G. Knepley } 13159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels, dm, 0, 0, 0)); 13163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13170df0e737SMichael Lange } 13180df0e737SMichael Lange 1319d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1320d71ae5a4SJacob Faibussowitsch { 132115078cd4SMichael Lange DM_Plex *mesh = (DM_Plex *)dm->data; 132215078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex *)(dmParallel)->data; 1323a6f36705SMichael Lange MPI_Comm comm; 1324a6f36705SMichael Lange DM refTree; 1325a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1326a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1327a6f36705SMichael Lange PetscBool flg; 1328a6f36705SMichael Lange 1329a6f36705SMichael Lange PetscFunctionBegin; 1330a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13310c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 13329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1333a6f36705SMichael Lange 1334a6f36705SMichael Lange /* Set up tree */ 13359566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm, &refTree)); 13369566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmParallel, refTree)); 13379566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm, &origParentSection, &origParents, &origChildIDs, NULL, NULL)); 1338a6f36705SMichael Lange if (origParentSection) { 1339a6f36705SMichael Lange PetscInt pStart, pEnd; 134008633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1341a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1342a6f36705SMichael Lange PetscSF parentSF; 1343a6f36705SMichael Lange 13449566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 13459566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel), &newParentSection)); 13469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newParentSection, pStart, pEnd)); 13479566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection)); 13489566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF)); 13499566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsetsParents)); 13509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newParentSection, &newParentSize)); 13519566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(newParentSize, &newParents, newParentSize, &newChildIDs)); 135208633170SToby Isaac if (original) { 135308633170SToby Isaac PetscInt numParents; 135408633170SToby Isaac 13559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(origParentSection, &numParents)); 13569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numParents, &globParents)); 13579566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents)); 13589371c9d4SSatish Balay } else { 135908633170SToby Isaac globParents = origParents; 136008633170SToby Isaac } 13619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE)); 13629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE)); 13631baa6e33SBarry Smith if (original) PetscCall(PetscFree(globParents)); 13649566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE)); 13659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE)); 13669566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents)); 136776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 13684a54e071SToby Isaac PetscInt p; 13694a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 13704a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 13719371c9d4SSatish Balay if (newParents[p] < 0) { 13729371c9d4SSatish Balay valid = PETSC_FALSE; 13739371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p)); 13749371c9d4SSatish Balay } 13754a54e071SToby Isaac } 137628b400f6SJacob Faibussowitsch PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 13774a54e071SToby Isaac } 13789566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-parents_view", &flg)); 1379a6f36705SMichael Lange if (flg) { 13809566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Parent Section: \n")); 13819566063dSJacob Faibussowitsch PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm))); 13829566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n")); 13839566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm))); 13849566063dSJacob Faibussowitsch PetscCall(PetscSFView(parentSF, NULL)); 1385a6f36705SMichael Lange } 13869566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmParallel, newParentSection, newParents, newChildIDs)); 13879566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newParentSection)); 13889566063dSJacob Faibussowitsch PetscCall(PetscFree2(newParents, newChildIDs)); 13899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&parentSF)); 1390a6f36705SMichael Lange } 139115078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 13923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1393a6f36705SMichael Lange } 13940df0e737SMichael Lange 139598ba2d7fSLawrence Mitchell /*@ 139698ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 139798ba2d7fSLawrence Mitchell 139898ba2d7fSLawrence Mitchell Input Parameters: 139998ba2d7fSLawrence Mitchell + dm - The DMPlex object 140098ba2d7fSLawrence Mitchell - flg - Balance the partition? 140198ba2d7fSLawrence Mitchell 140298ba2d7fSLawrence Mitchell Level: intermediate 140398ba2d7fSLawrence Mitchell 1404db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()` 140598ba2d7fSLawrence Mitchell @*/ 1406d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 1407d71ae5a4SJacob Faibussowitsch { 140898ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 140998ba2d7fSLawrence Mitchell 141098ba2d7fSLawrence Mitchell PetscFunctionBegin; 141198ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 14123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 141398ba2d7fSLawrence Mitchell } 141498ba2d7fSLawrence Mitchell 141598ba2d7fSLawrence Mitchell /*@ 141698ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 141798ba2d7fSLawrence Mitchell 141898ba2d7fSLawrence Mitchell Input Parameter: 1419a2b725a8SWilliam Gropp . dm - The DMPlex object 142098ba2d7fSLawrence Mitchell 142198ba2d7fSLawrence Mitchell Output Parameter: 1422a2b725a8SWilliam Gropp . flg - Balance the partition? 142398ba2d7fSLawrence Mitchell 142498ba2d7fSLawrence Mitchell Level: intermediate 142598ba2d7fSLawrence Mitchell 1426db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()` 142798ba2d7fSLawrence Mitchell @*/ 1428d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 1429d71ae5a4SJacob Faibussowitsch { 143098ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 143198ba2d7fSLawrence Mitchell 143298ba2d7fSLawrence Mitchell PetscFunctionBegin; 143398ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1434534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 143598ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 14363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 143798ba2d7fSLawrence Mitchell } 143898ba2d7fSLawrence Mitchell 1439fc02256fSLawrence Mitchell typedef struct { 1440fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1441fc02256fSLawrence Mitchell } Petsc3Int; 1442fc02256fSLawrence Mitchell 1443fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 1444d71ae5a4SJacob Faibussowitsch static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) 1445d71ae5a4SJacob Faibussowitsch { 1446fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1447fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1448fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1449fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1450fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1451fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1452fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1453fc02256fSLawrence Mitchell a[i].index = b[i].index; 1454fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1455fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1456fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1457fc02256fSLawrence Mitchell a[i].index = b[i].index; 1458fc02256fSLawrence Mitchell } 1459fc02256fSLawrence Mitchell } 1460fc02256fSLawrence Mitchell } 1461fc02256fSLawrence Mitchell } 1462fc02256fSLawrence Mitchell 1463f5bf2dbfSMichael Lange /*@C 1464a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1465f5bf2dbfSMichael Lange 1466064ec1f3Sprj- Input Parameters: 1467f5bf2dbfSMichael Lange + dm - The source DMPlex object 1468f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 1469d8d19677SJose E. Roman - ownership - Flag causing a vote to determine point ownership 1470f5bf2dbfSMichael Lange 1471f5bf2dbfSMichael Lange Output Parameter: 1472d8d19677SJose E. Roman . pointSF - The star forest describing the point overlap in the remapped DM 1473f5bf2dbfSMichael Lange 14743618482eSVaclav Hapla Notes: 14753618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 14763618482eSVaclav Hapla 1477f5bf2dbfSMichael Lange Level: developer 1478f5bf2dbfSMichael Lange 1479db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 1480f5bf2dbfSMichael Lange @*/ 1481d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1482d71ae5a4SJacob Faibussowitsch { 148323193802SMatthew G. Knepley PetscMPIInt rank, size; 14841627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1485f5bf2dbfSMichael Lange PetscInt *pointLocal; 1486f5bf2dbfSMichael Lange const PetscInt *leaves; 1487f5bf2dbfSMichael Lange const PetscSFNode *roots; 1488f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 148923193802SMatthew G. Knepley Vec shifts; 1490cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 149123193802SMatthew G. Knepley const PetscScalar *shift = NULL; 149223193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 149398ba2d7fSLawrence Mitchell PetscBool balance; 1494f5bf2dbfSMichael Lange 1495f5bf2dbfSMichael Lange PetscFunctionBegin; 1496f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 14989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 14999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF, dm, 0, 0, 0)); 1500f5bf2dbfSMichael Lange 15019566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 15029566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots)); 15039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes)); 1504f5bf2dbfSMichael Lange if (ownership) { 1505fc02256fSLawrence Mitchell MPI_Op op; 1506fc02256fSLawrence Mitchell MPI_Datatype datatype; 1507fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 150823193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 150998ba2d7fSLawrence Mitchell if (balance) { 151023193802SMatthew G. Knepley PetscRandom r; 151123193802SMatthew G. Knepley 15129566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r)); 15139566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(r, 0, 2467 * size)); 15149566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &shifts)); 15159566063dSJacob Faibussowitsch PetscCall(VecSetSizes(shifts, numShifts, numShifts)); 15169566063dSJacob Faibussowitsch PetscCall(VecSetType(shifts, VECSTANDARD)); 15179566063dSJacob Faibussowitsch PetscCall(VecSetRandom(shifts, r)); 15189566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&r)); 15199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(shifts, &shift)); 152023193802SMatthew G. Knepley } 152123193802SMatthew G. Knepley 15229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &rootVote)); 15239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &leafVote)); 152423193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1525f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 152623193802SMatthew G. Knepley if (shiftDebug) { 15279371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject)dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index, 15289371c9d4SSatish Balay (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]), (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size)); 152923193802SMatthew G. Knepley } 1530f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1531fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size; 1532fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1533fc02256fSLawrence Mitchell leafVote[p].index = p; 1534f5bf2dbfSMichael Lange } 1535f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 15361627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1537fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1538fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1539fc02256fSLawrence Mitchell rootVote[p].index = -3; 1540f5bf2dbfSMichael Lange } 15419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype)); 15429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&datatype)); 15439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op)); 15449566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op)); 15459566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op)); 15469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&op)); 15479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&datatype)); 1548c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1549fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1550fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1551c091126eSLawrence Mitchell } 15529566063dSJacob Faibussowitsch PetscCall(PetscFree(leafVote)); 15539566063dSJacob Faibussowitsch PetscCall(PetscFree(rootVote)); 1554f5bf2dbfSMichael Lange } else { 1555f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1556f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1557f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1558fc02256fSLawrence Mitchell } 1559f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1560f5bf2dbfSMichael Lange /* Write new local id into old location */ 1561ad540459SPierre Jolivet if (roots[p].rank == rank) rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1562f5bf2dbfSMichael Lange } 1563f5bf2dbfSMichael Lange } 15649566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE)); 15659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE)); 1566f5bf2dbfSMichael Lange 156723193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1568b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 156923193802SMatthew G. Knepley } 15709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointLocal)); 15719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointRemote)); 1572f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1573b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 15743618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1575f5bf2dbfSMichael Lange pointLocal[idx] = p; 1576f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1577f5bf2dbfSMichael Lange idx++; 1578f5bf2dbfSMichael Lange } 1579f5bf2dbfSMichael Lange } 158023193802SMatthew G. Knepley if (shift) { 15819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(shifts, &shift)); 15829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&shifts)); 158323193802SMatthew G. Knepley } 15849566063dSJacob Faibussowitsch if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject)dm), PETSC_STDOUT)); 15859566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), pointSF)); 15869566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*pointSF)); 15879566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER)); 15889566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootNodes, leafNodes)); 15899566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF, dm, 0, 0, 0)); 1590d7d32a9aSMatthew G. Knepley if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF, PETSC_FALSE)); 15913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1592f5bf2dbfSMichael Lange } 1593f5bf2dbfSMichael Lange 159415078cd4SMichael Lange /*@C 159515078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 159615078cd4SMichael Lange 1597d083f849SBarry Smith Collective on dm 159883655b49SVáclav Hapla 1599064ec1f3Sprj- Input Parameters: 160015078cd4SMichael Lange + dm - The source DMPlex object 1601d8d19677SJose E. Roman - sf - The star forest communication context describing the migration pattern 160215078cd4SMichael Lange 160315078cd4SMichael Lange Output Parameter: 1604d8d19677SJose E. Roman . targetDM - The target DMPlex object 160515078cd4SMichael Lange 1606b9f40539SMichael Lange Level: intermediate 160715078cd4SMichael Lange 1608db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 160915078cd4SMichael Lange @*/ 1610d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 1611d71ae5a4SJacob Faibussowitsch { 1612b9f40539SMichael Lange MPI_Comm comm; 1613cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1614b9f40539SMichael Lange PetscSF sfPoint; 161515078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1616ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 161715078cd4SMichael Lange 161815078cd4SMichael Lange PetscFunctionBegin; 161915078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16209566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0)); 16219566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 16229566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16239566063dSJacob Faibussowitsch PetscCall(DMSetDimension(targetDM, dim)); 16249566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 16259566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(targetDM, cdim)); 162615078cd4SMichael Lange 1627bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 16289566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 16299566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 1630bfb0467fSMichael Lange if (nroots >= 0) { 1631b9f40539SMichael Lange IS isOriginal; 1632ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1633ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1634367003a6SStefano Zampini 1635b9f40539SMichael Lange /* Get the original point numbering */ 16369566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal)); 16379566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal)); 16389566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size)); 16399566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt **)&numbering_orig)); 1640b9f40539SMichael Lange /* Convert to positive global numbers */ 16419371c9d4SSatish Balay for (n = 0; n < size; n++) { 16429371c9d4SSatish Balay if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n] + 1); 16439371c9d4SSatish Balay } 1644b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 16459566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL)); 16469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &numbering_new)); 16479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE)); 16489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE)); 16499566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration)); 16509566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt **)&numbering_orig)); 16519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isOriginal)); 165215078cd4SMichael Lange } else { 1653bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 16549566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration)); 165515078cd4SMichael Lange } 1656a5a902f7SVaclav Hapla PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration")); 1657a5a902f7SVaclav Hapla PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view")); 165815078cd4SMichael Lange /* Migrate DM data to target DM */ 16599566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM)); 16609566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeLabels(dm, sf, targetDM)); 16619566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM)); 16629566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM)); 16639566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogOriginal)); 16649566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogMigration)); 16659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0)); 16663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 166715078cd4SMichael Lange } 166815078cd4SMichael Lange 16693b8f15a2SMatthew G. Knepley /*@C 167070034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 167170034214SMatthew G. Knepley 1672d083f849SBarry Smith Collective on dm 167370034214SMatthew G. Knepley 1674064ec1f3Sprj- Input Parameters: 167570034214SMatthew G. Knepley + dm - The original DMPlex object 167670034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 167770034214SMatthew G. Knepley 1678064ec1f3Sprj- Output Parameters: 1679f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1680f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 168170034214SMatthew G. Knepley 1682f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 168370034214SMatthew G. Knepley 1684b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 168570034214SMatthew G. Knepley representation on the mesh. 168670034214SMatthew G. Knepley 168770034214SMatthew G. Knepley Level: intermediate 168870034214SMatthew G. Knepley 1689db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()` 169070034214SMatthew G. Knepley @*/ 1691d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 1692d71ae5a4SJacob Faibussowitsch { 169370034214SMatthew G. Knepley MPI_Comm comm; 169415078cd4SMichael Lange PetscPartitioner partitioner; 1695f8987ae8SMichael Lange IS cellPart; 1696f8987ae8SMichael Lange PetscSection cellPartSection; 1697cf86098cSMatthew G. Knepley DM dmCoord; 1698f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1699874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 170098ba2d7fSLawrence Mitchell PetscBool flg, balance; 1701874ddda9SLisandro Dalcin PetscMPIInt rank, size; 170270034214SMatthew G. Knepley 170370034214SMatthew G. Knepley PetscFunctionBegin; 170470034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1705d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1706d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf, 3); 1707d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel, 4); 170870034214SMatthew G. Knepley 17090c86c063SLisandro Dalcin if (sf) *sf = NULL; 17100c86c063SLisandro Dalcin *dmParallel = NULL; 17119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 17129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 17139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17143ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 171570034214SMatthew G. Knepley 17169566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Distribute, dm, 0, 0, 0)); 171715078cd4SMichael Lange /* Create cell partition */ 17189566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0)); 17199566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &cellPartSection)); 17209566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &partitioner)); 17219566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart)); 17229566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartSelf, dm, 0, 0, 0)); 1723f8987ae8SMichael Lange { 1724f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1725825f8a23SLisandro Dalcin IS is; 1726825f8a23SLisandro Dalcin PetscHSetI ht; 1727f8987ae8SMichael Lange const PetscInt *points; 17288e330a33SStefano Zampini PetscInt *iranks; 17298e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1730825f8a23SLisandro Dalcin 17319566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition)); 1732825f8a23SLisandro Dalcin /* Preallocate strata */ 17339566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 17349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1735825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 17369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 17379566063dSJacob Faibussowitsch if (npoints) PetscCall(PetscHSetIAdd(ht, proc)); 1738825f8a23SLisandro Dalcin } 17399566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(ht, &nranks)); 17409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nranks, &iranks)); 17419566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetElems(ht, &poff, iranks)); 17429566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 17439566063dSJacob Faibussowitsch PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks)); 17449566063dSJacob Faibussowitsch PetscCall(PetscFree(iranks)); 1745825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 17469566063dSJacob Faibussowitsch PetscCall(ISGetIndices(cellPart, &points)); 17479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1748f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 17499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 1750825f8a23SLisandro Dalcin if (!npoints) continue; 17519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff)); 17529566063dSJacob Faibussowitsch PetscCall(DMPlexClosurePoints_Private(dm, npoints, points + poff, &is)); 17539566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(lblPartition, proc, is)); 17549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 1755f8987ae8SMichael Lange } 17569566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(cellPart, &points)); 1757f8987ae8SMichael Lange } 17589566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartSelf, dm, 0, 0, 0)); 17596e203dd9SStefano Zampini 17609566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration)); 17619566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration)); 17629566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration)); 17639566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified)); 17649566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 176543f7d02bSMichael Lange sfMigration = sfStratified; 17669566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sfMigration)); 17679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0)); 17689566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-partition_view", &flg)); 176970034214SMatthew G. Knepley if (flg) { 17709566063dSJacob Faibussowitsch PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm))); 17719566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm))); 177270034214SMatthew G. Knepley } 1773f8987ae8SMichael Lange 177415078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 17759566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmParallel)); 17769566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*dmParallel, "Parallel Mesh")); 17779566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel)); 177870034214SMatthew G. Knepley 1779a157612eSMichael Lange /* Build the point SF without overlap */ 17809566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 17819566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance)); 17829566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint)); 17839566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmParallel, sfPoint)); 17845f06a3ddSJed Brown PetscCall(DMPlexMigrateIsoperiodicFaceSF_Internal(dm, *dmParallel, sfMigration)); 17859566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord)); 17869566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 17879566063dSJacob Faibussowitsch if (flg) PetscCall(PetscSFView(sfPoint, NULL)); 178870034214SMatthew G. Knepley 1789a157612eSMichael Lange if (overlap > 0) { 179015078cd4SMichael Lange DM dmOverlap; 179157f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 179257f290daSMatthew G. Knepley const PetscInt *oldLeaves; 179357f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 179415078cd4SMichael Lange const PetscSFNode *oldRemote; 179515078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1796524e35f8SStefano Zampini 1797a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 17989566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap)); 17999566063dSJacob Faibussowitsch PetscCall(DMDestroy(dmParallel)); 1800a157612eSMichael Lange *dmParallel = dmOverlap; 1801c389ea9fSToby Isaac if (flg) { 18029566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n")); 18039566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfOverlap, NULL)); 1804c389ea9fSToby Isaac } 180543331d4aSMichael Lange 1806f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 18079566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote)); 18089566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL)); 18099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &newRemote)); 181057f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 181157f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 181257f290daSMatthew G. Knepley if (oldLeaves) { 181373e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 18149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(noldleaves, &permRemote)); 181557f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 181657f290daSMatthew G. Knepley oldRemote = permRemote; 181757f290daSMatthew G. Knepley } 18189566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE)); 18199566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE)); 18209566063dSJacob Faibussowitsch if (oldLeaves) PetscCall(PetscFree(oldRemote)); 18219566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sfOverlapPoint)); 18229566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER)); 18239566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 18249566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 182515078cd4SMichael Lange sfMigration = sfOverlapPoint; 1826c389ea9fSToby Isaac } 1827bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 18289566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblPartition)); 18299566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblMigration)); 18309566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&cellPartSection)); 18319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellPart)); 183245480ffeSMatthew G. Knepley /* Copy discretization */ 18339566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *dmParallel)); 183466fe0bfeSMatthew G. Knepley /* Create sfNatural */ 183566fe0bfeSMatthew G. Knepley if (dm->useNatural) { 183666fe0bfeSMatthew G. Knepley PetscSection section; 183766fe0bfeSMatthew G. Knepley 1838fc6a3818SBlaise Bourdin PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE)); 1839fc6a3818SBlaise Bourdin PetscCall(DMGetLocalSection(dm, §ion)); 1840fc6a3818SBlaise Bourdin 18418aee0f92SAlexis Marboeuf /* First DM with useNatural = PETSC_TRUE is considered natural */ 18428aee0f92SAlexis Marboeuf /* sfMigration and sfNatural are respectively the point and dofs SFs mapping to this natural DM */ 1843fc6a3818SBlaise Bourdin /* Compose with a previous sfNatural if present */ 1844fc6a3818SBlaise Bourdin if (dm->sfNatural) { 1845fc6a3818SBlaise Bourdin PetscSF natSF; 1846fc6a3818SBlaise Bourdin 1847fc6a3818SBlaise Bourdin PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &natSF)); 1848fc6a3818SBlaise Bourdin PetscCall(PetscSFCompose(dm->sfNatural, natSF, &(*dmParallel)->sfNatural)); 1849fc6a3818SBlaise Bourdin PetscCall(PetscSFDestroy(&natSF)); 1850fc6a3818SBlaise Bourdin } else { 1851fc6a3818SBlaise Bourdin PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural)); 1852fc6a3818SBlaise Bourdin } 18538aee0f92SAlexis Marboeuf /* Compose with a previous sfMigration if present */ 18548aee0f92SAlexis Marboeuf if (dm->sfMigration) { 18558aee0f92SAlexis Marboeuf PetscSF naturalPointSF; 18568aee0f92SAlexis Marboeuf 18578aee0f92SAlexis Marboeuf PetscCall(PetscSFCompose(dm->sfMigration, sfMigration, &naturalPointSF)); 18588aee0f92SAlexis Marboeuf PetscCall(PetscSFDestroy(&sfMigration)); 18598aee0f92SAlexis Marboeuf sfMigration = naturalPointSF; 18608aee0f92SAlexis Marboeuf } 186166fe0bfeSMatthew G. Knepley } 18625de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel)); 1863721cbd76SMatthew G. Knepley /* Cleanup */ 18649371c9d4SSatish Balay if (sf) { 18659371c9d4SSatish Balay *sf = sfMigration; 18669371c9d4SSatish Balay } else PetscCall(PetscSFDestroy(&sfMigration)); 18679566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 18689566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Distribute, dm, 0, 0, 0)); 18693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 187070034214SMatthew G. Knepley } 1871a157612eSMichael Lange 1872a157612eSMichael Lange /*@C 187324cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1874a157612eSMichael Lange 1875d083f849SBarry Smith Collective on dm 1876a157612eSMichael Lange 1877064ec1f3Sprj- Input Parameters: 1878064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 187957fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1880a157612eSMichael Lange 1881064ec1f3Sprj- Output Parameters: 1882a157612eSMichael Lange + sf - The PetscSF used for point distribution 1883a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1884a157612eSMichael Lange 1885dccdeccaSVaclav Hapla Notes: 1886dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1887a157612eSMichael Lange 1888b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1889a157612eSMichael Lange representation on the mesh. 1890a157612eSMichael Lange 1891c506a872SMatthew G. Knepley Options Database Keys: 1892c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names 1893c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...> - List of overlap label values 1894c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name> - Label used to exclude points from overlap 1895c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int> - Label value used to exclude points from overlap 1896c506a872SMatthew G. Knepley 1897dccdeccaSVaclav Hapla Level: advanced 1898a157612eSMichael Lange 1899db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()` 1900a157612eSMichael Lange @*/ 1901d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1902d71ae5a4SJacob Faibussowitsch { 1903c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 1904a157612eSMichael Lange MPI_Comm comm; 19053567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1906a157612eSMichael Lange PetscSection rootSection, leafSection; 1907a157612eSMichael Lange IS rootrank, leafrank; 1908cf86098cSMatthew G. Knepley DM dmCoord; 1909a9f1d5b2SMichael Lange DMLabel lblOverlap; 1910f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1911a157612eSMichael Lange 1912a157612eSMichael Lange PetscFunctionBegin; 1913a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 191457fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1915a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1916a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1917a157612eSMichael Lange 19180c86c063SLisandro Dalcin if (sf) *sf = NULL; 19190c86c063SLisandro Dalcin *dmOverlap = NULL; 19209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 19219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 19229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19233ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 1924c506a872SMatthew G. Knepley { 1925c506a872SMatthew G. Knepley // We need to get options for the _already_distributed mesh, so it must be done here 1926c506a872SMatthew G. Knepley PetscInt overlap; 1927c506a872SMatthew G. Knepley const char *prefix; 1928c506a872SMatthew G. Knepley char oldPrefix[PETSC_MAX_PATH_LEN]; 1929a157612eSMichael Lange 1930c506a872SMatthew G. Knepley oldPrefix[0] = '\0'; 1931c506a872SMatthew G. Knepley PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 1932*c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(oldPrefix, prefix, sizeof(oldPrefix))); 1933c506a872SMatthew G. Knepley PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, "dist_")); 1934c506a872SMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 1935c506a872SMatthew G. Knepley PetscObjectOptionsBegin((PetscObject)dm); 1936dbbe0bcdSBarry Smith PetscCall(DMSetFromOptions_Overlap_Plex(dm, PetscOptionsObject, &overlap)); 1937c506a872SMatthew G. Knepley PetscOptionsEnd(); 1938c506a872SMatthew G. Knepley PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, oldPrefix[0] == '\0' ? NULL : oldPrefix)); 1939c506a872SMatthew G. Knepley } 19409566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 1941a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 19429566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0)); 19439566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &rootSection)); 19449566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &leafSection)); 19459566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank)); 1946c506a872SMatthew G. Knepley if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 1947c506a872SMatthew G. Knepley else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 1948a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 19499566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap)); 19509566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified)); 19519566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 1952a9f1d5b2SMichael Lange sfOverlap = sfStratified; 19539566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sfOverlap, "Overlap SF")); 19549566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sfOverlap)); 1955a9f1d5b2SMichael Lange 19569566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 19579566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 19589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rootrank)); 19599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&leafrank)); 19609566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0)); 1961a157612eSMichael Lange 1962a157612eSMichael Lange /* Build the overlapping DM */ 19639566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmOverlap)); 19649566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*dmOverlap, "Parallel Mesh")); 19659566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap)); 1966cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 196760667520SVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap)); 1968f5bf2dbfSMichael Lange /* Build the new point SF */ 19699566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint)); 19709566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmOverlap, sfPoint)); 19719566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord)); 19729566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 19736858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(*dmOverlap, &dmCoord)); 19746858538eSMatthew G. Knepley if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 19759566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 1976a157612eSMichael Lange /* Cleanup overlap partition */ 19779566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblOverlap)); 1978a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 19799566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfOverlap)); 19809566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 19813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1982a157612eSMichael Lange } 19836462276dSToby Isaac 1984d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) 1985d71ae5a4SJacob Faibussowitsch { 1986cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex *)dm->data; 1987cb54e036SVaclav Hapla 1988cb54e036SVaclav Hapla PetscFunctionBegin; 1989cb54e036SVaclav Hapla *overlap = mesh->overlap; 19903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1991cb54e036SVaclav Hapla } 1992cb54e036SVaclav Hapla 1993d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap) 1994d71ae5a4SJacob Faibussowitsch { 199560667520SVaclav Hapla DM_Plex *mesh = NULL; 199660667520SVaclav Hapla DM_Plex *meshSrc = NULL; 199760667520SVaclav Hapla 199860667520SVaclav Hapla PetscFunctionBegin; 199960667520SVaclav Hapla PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 200060667520SVaclav Hapla mesh = (DM_Plex *)dm->data; 200160667520SVaclav Hapla mesh->overlap = overlap; 200260667520SVaclav Hapla if (dmSrc) { 200360667520SVaclav Hapla PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX); 200460667520SVaclav Hapla meshSrc = (DM_Plex *)dmSrc->data; 200560667520SVaclav Hapla mesh->overlap += meshSrc->overlap; 200660667520SVaclav Hapla } 20073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 200860667520SVaclav Hapla } 200960667520SVaclav Hapla 2010cb54e036SVaclav Hapla /*@ 2011c506a872SMatthew G. Knepley DMPlexGetOverlap - Get the width of the cell overlap 2012cb54e036SVaclav Hapla 2013cb54e036SVaclav Hapla Not collective 2014cb54e036SVaclav Hapla 2015cb54e036SVaclav Hapla Input Parameter: 2016cb54e036SVaclav Hapla . dm - The DM 2017cb54e036SVaclav Hapla 2018064ec1f3Sprj- Output Parameter: 2019c506a872SMatthew G. Knepley . overlap - the width of the cell overlap 2020cb54e036SVaclav Hapla 2021cb54e036SVaclav Hapla Level: intermediate 2022cb54e036SVaclav Hapla 2023c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()` 2024cb54e036SVaclav Hapla @*/ 2025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) 2026d71ae5a4SJacob Faibussowitsch { 2027cb54e036SVaclav Hapla PetscFunctionBegin; 2028cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2029c506a872SMatthew G. Knepley PetscValidIntPointer(overlap, 2); 2030cac4c232SBarry Smith PetscUseMethod(dm, "DMPlexGetOverlap_C", (DM, PetscInt *), (dm, overlap)); 20313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2032cb54e036SVaclav Hapla } 2033cb54e036SVaclav Hapla 2034c506a872SMatthew G. Knepley /*@ 2035c506a872SMatthew G. Knepley DMPlexSetOverlap - Set the width of the cell overlap 2036c506a872SMatthew G. Knepley 2037c506a872SMatthew G. Knepley Logically collective 2038c506a872SMatthew G. Knepley 2039c506a872SMatthew G. Knepley Input Parameters: 2040c506a872SMatthew G. Knepley + dm - The DM 2041c506a872SMatthew G. Knepley . dmSrc - The DM that produced this one, or NULL 2042c506a872SMatthew G. Knepley - overlap - the width of the cell overlap 2043c506a872SMatthew G. Knepley 2044c506a872SMatthew G. Knepley Note: 2045c506a872SMatthew G. Knepley The overlap from dmSrc is added to dm 2046c506a872SMatthew G. Knepley 2047c506a872SMatthew G. Knepley Level: intermediate 2048c506a872SMatthew G. Knepley 2049c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()` 2050c506a872SMatthew G. Knepley @*/ 2051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap) 2052d71ae5a4SJacob Faibussowitsch { 2053c506a872SMatthew G. Knepley PetscFunctionBegin; 2054c506a872SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2055c506a872SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 3); 2056c506a872SMatthew G. Knepley PetscTryMethod(dm, "DMPlexSetOverlap_C", (DM, DM, PetscInt), (dm, dmSrc, overlap)); 20573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2058c506a872SMatthew G. Knepley } 2059c506a872SMatthew G. Knepley 2060d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist) 2061d71ae5a4SJacob Faibussowitsch { 2062e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2063e600fa54SMatthew G. Knepley 2064e600fa54SMatthew G. Knepley PetscFunctionBegin; 2065e600fa54SMatthew G. Knepley mesh->distDefault = dist; 20663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2067e600fa54SMatthew G. Knepley } 2068e600fa54SMatthew G. Knepley 2069e600fa54SMatthew G. Knepley /*@ 2070e600fa54SMatthew G. Knepley DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default 2071e600fa54SMatthew G. Knepley 2072e600fa54SMatthew G. Knepley Logically collective 2073e600fa54SMatthew G. Knepley 2074e600fa54SMatthew G. Knepley Input Parameters: 2075e600fa54SMatthew G. Knepley + dm - The DM 2076e600fa54SMatthew G. Knepley - dist - Flag for distribution 2077e600fa54SMatthew G. Knepley 2078e600fa54SMatthew G. Knepley Level: intermediate 2079e600fa54SMatthew G. Knepley 20809e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()` 2081e600fa54SMatthew G. Knepley @*/ 2082d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist) 2083d71ae5a4SJacob Faibussowitsch { 2084e600fa54SMatthew G. Knepley PetscFunctionBegin; 2085e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2086e600fa54SMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, dist, 2); 2087cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexDistributeSetDefault_C", (DM, PetscBool), (dm, dist)); 20883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2089e600fa54SMatthew G. Knepley } 2090e600fa54SMatthew G. Knepley 2091d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist) 2092d71ae5a4SJacob Faibussowitsch { 2093e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2094e600fa54SMatthew G. Knepley 2095e600fa54SMatthew G. Knepley PetscFunctionBegin; 2096e600fa54SMatthew G. Knepley *dist = mesh->distDefault; 20973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2098e600fa54SMatthew G. Knepley } 2099e600fa54SMatthew G. Knepley 2100e600fa54SMatthew G. Knepley /*@ 2101e600fa54SMatthew G. Knepley DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default 2102e600fa54SMatthew G. Knepley 2103e600fa54SMatthew G. Knepley Not collective 2104e600fa54SMatthew G. Knepley 2105e600fa54SMatthew G. Knepley Input Parameter: 2106e600fa54SMatthew G. Knepley . dm - The DM 2107e600fa54SMatthew G. Knepley 2108e600fa54SMatthew G. Knepley Output Parameter: 2109e600fa54SMatthew G. Knepley . dist - Flag for distribution 2110e600fa54SMatthew G. Knepley 2111e600fa54SMatthew G. Knepley Level: intermediate 2112e600fa54SMatthew G. Knepley 21139e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()` 2114e600fa54SMatthew G. Knepley @*/ 2115d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist) 2116d71ae5a4SJacob Faibussowitsch { 2117e600fa54SMatthew G. Knepley PetscFunctionBegin; 2118e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2119e600fa54SMatthew G. Knepley PetscValidBoolPointer(dist, 2); 2120cac4c232SBarry Smith PetscUseMethod(dm, "DMPlexDistributeGetDefault_C", (DM, PetscBool *), (dm, dist)); 21213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2122e600fa54SMatthew G. Knepley } 2123e600fa54SMatthew G. Knepley 21246462276dSToby Isaac /*@C 21256462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 21266462276dSToby Isaac root process of the original's communicator. 21276462276dSToby Isaac 2128d083f849SBarry Smith Collective on dm 212983655b49SVáclav Hapla 2130064ec1f3Sprj- Input Parameter: 21316462276dSToby Isaac . dm - the original DMPlex object 21326462276dSToby Isaac 21336462276dSToby Isaac Output Parameters: 2134a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2135a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 21366462276dSToby Isaac 21376462276dSToby Isaac Level: intermediate 21386462276dSToby Isaac 2139db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()` 21406462276dSToby Isaac @*/ 2141d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 2142d71ae5a4SJacob Faibussowitsch { 21436462276dSToby Isaac MPI_Comm comm; 21446462276dSToby Isaac PetscMPIInt size; 21456462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 21466462276dSToby Isaac 21476462276dSToby Isaac PetscFunctionBegin; 21486462276dSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2149064a246eSJacob Faibussowitsch PetscValidPointer(gatherMesh, 3); 21500c86c063SLisandro Dalcin *gatherMesh = NULL; 2151a13df41bSStefano Zampini if (sf) *sf = NULL; 21526462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 21539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21543ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 21559566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &oldPart)); 21569566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldPart)); 21579566063dSJacob Faibussowitsch PetscCall(PetscPartitionerCreate(comm, &gatherPart)); 21589566063dSJacob Faibussowitsch PetscCall(PetscPartitionerSetType(gatherPart, PETSCPARTITIONERGATHER)); 21599566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm, gatherPart)); 21609566063dSJacob Faibussowitsch PetscCall(DMPlexDistribute(dm, 0, sf, gatherMesh)); 2161a13df41bSStefano Zampini 21629566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm, oldPart)); 21639566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&gatherPart)); 21649566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&oldPart)); 21653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21666462276dSToby Isaac } 21676462276dSToby Isaac 21686462276dSToby Isaac /*@C 21696462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 21706462276dSToby Isaac 2171d083f849SBarry Smith Collective on dm 217283655b49SVáclav Hapla 2173064ec1f3Sprj- Input Parameter: 21746462276dSToby Isaac . dm - the original DMPlex object 21756462276dSToby Isaac 21766462276dSToby Isaac Output Parameters: 2177a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2178a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 21796462276dSToby Isaac 21806462276dSToby Isaac Level: intermediate 21816462276dSToby Isaac 2182db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()` 21836462276dSToby Isaac @*/ 2184d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 2185d71ae5a4SJacob Faibussowitsch { 21866462276dSToby Isaac MPI_Comm comm; 21876462276dSToby Isaac PetscMPIInt size, rank; 21886462276dSToby Isaac PetscInt pStart, pEnd, p; 21896462276dSToby Isaac PetscInt numPoints = -1; 2190a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 21916462276dSToby Isaac DM gatherDM, dmCoord; 21926462276dSToby Isaac PetscSFNode *points; 21936462276dSToby Isaac 21946462276dSToby Isaac PetscFunctionBegin; 21956462276dSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2196064a246eSJacob Faibussowitsch PetscValidPointer(redundantMesh, 3); 21970c86c063SLisandro Dalcin *redundantMesh = NULL; 21986462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 21999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 220068dbc166SMatthew G. Knepley if (size == 1) { 22019566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 220268dbc166SMatthew G. Knepley *redundantMesh = dm; 2203a13df41bSStefano Zampini if (sf) *sf = NULL; 22043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 220568dbc166SMatthew G. Knepley } 22069566063dSJacob Faibussowitsch PetscCall(DMPlexGetGatherDM(dm, &gatherSF, &gatherDM)); 22073ba16761SJacob Faibussowitsch if (!gatherDM) PetscFunctionReturn(PETSC_SUCCESS); 22089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 22099566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(gatherDM, &pStart, &pEnd)); 22106462276dSToby Isaac numPoints = pEnd - pStart; 22119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numPoints, 1, MPIU_INT, 0, comm)); 22129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints, &points)); 22139566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &migrationSF)); 22146462276dSToby Isaac for (p = 0; p < numPoints; p++) { 22156462276dSToby Isaac points[p].index = p; 22166462276dSToby Isaac points[p].rank = 0; 22176462276dSToby Isaac } 22189566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(migrationSF, pEnd - pStart, numPoints, NULL, PETSC_OWN_POINTER, points, PETSC_OWN_POINTER)); 22199566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, redundantMesh)); 22209566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*redundantMesh, "Redundant Mesh")); 22219566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh)); 22222e28cf0cSVaclav Hapla /* This is to express that all point are in overlap */ 22232e28cf0cSVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT)); 22249566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint)); 22259566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*redundantMesh, sfPoint)); 22269566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord)); 22279566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 22289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2229a13df41bSStefano Zampini if (sf) { 2230a13df41bSStefano Zampini PetscSF tsf; 2231a13df41bSStefano Zampini 22329566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(gatherSF, migrationSF, &tsf)); 22339566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf)); 22349566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tsf)); 2235a13df41bSStefano Zampini } 22369566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&migrationSF)); 22379566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&gatherSF)); 22389566063dSJacob Faibussowitsch PetscCall(DMDestroy(&gatherDM)); 22399566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *redundantMesh)); 22405de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh)); 22413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22426462276dSToby Isaac } 22435fa78c88SVaclav Hapla 22445fa78c88SVaclav Hapla /*@ 22455fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 22465fa78c88SVaclav Hapla 22475fa78c88SVaclav Hapla Collective 22485fa78c88SVaclav Hapla 22495fa78c88SVaclav Hapla Input Parameter: 22505fa78c88SVaclav Hapla . dm - The DM object 22515fa78c88SVaclav Hapla 22525fa78c88SVaclav Hapla Output Parameter: 22535fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 22545fa78c88SVaclav Hapla 22555fa78c88SVaclav Hapla Level: intermediate 22565fa78c88SVaclav Hapla 22575fa78c88SVaclav Hapla Notes: 22585fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 22595fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 22605fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 22615fa78c88SVaclav Hapla 2262db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()` 22635fa78c88SVaclav Hapla @*/ 2264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) 2265d71ae5a4SJacob Faibussowitsch { 22665fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 22675fa78c88SVaclav Hapla MPI_Comm comm; 226835d70e31SStefano Zampini PetscMPIInt size; 22695fa78c88SVaclav Hapla 22705fa78c88SVaclav Hapla PetscFunctionBegin; 22715fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2272dadcf809SJacob Faibussowitsch PetscValidBoolPointer(distributed, 2); 22739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 22749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 22759371c9d4SSatish Balay if (size == 1) { 22769371c9d4SSatish Balay *distributed = PETSC_FALSE; 22773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22789371c9d4SSatish Balay } 22799566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 228035d70e31SStefano Zampini count = (pEnd - pStart) > 0 ? 1 : 0; 22819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm)); 22825fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 22833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22845fa78c88SVaclav Hapla } 22851d1f2f2aSksagiyam 22861d1f2f2aSksagiyam /*@C 22871d1f2f2aSksagiyam DMPlexDistributionSetName - Set the name of the specific parallel distribution 22881d1f2f2aSksagiyam 22891d1f2f2aSksagiyam Input Parameters: 22901d1f2f2aSksagiyam + dm - The DM 22911d1f2f2aSksagiyam - name - The name of the specific parallel distribution 22921d1f2f2aSksagiyam 22931d1f2f2aSksagiyam Note: 22941d1f2f2aSksagiyam If distribution name is set when saving, DMPlexTopologyView() saves the plex's 22951d1f2f2aSksagiyam parallel distribution (i.e., partition, ownership, and local ordering of points) under 22961d1f2f2aSksagiyam this name. Conversely, if distribution name is set when loading, DMPlexTopologyLoad() 22971d1f2f2aSksagiyam loads the parallel distribution stored in file under this name. 22981d1f2f2aSksagiyam 22991d1f2f2aSksagiyam Level: developer 23001d1f2f2aSksagiyam 23011d1f2f2aSksagiyam .seealso: `DMPlexDistributionGetName()`, `DMPlexTopologyView()`, `DMPlexTopologyLoad()` 23021d1f2f2aSksagiyam @*/ 2303d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributionSetName(DM dm, const char name[]) 2304d71ae5a4SJacob Faibussowitsch { 23051d1f2f2aSksagiyam DM_Plex *mesh = (DM_Plex *)dm->data; 23061d1f2f2aSksagiyam 23071d1f2f2aSksagiyam PetscFunctionBegin; 23081d1f2f2aSksagiyam PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 23091d1f2f2aSksagiyam if (name) PetscValidCharPointer(name, 2); 23101d1f2f2aSksagiyam PetscCall(PetscFree(mesh->distributionName)); 23111d1f2f2aSksagiyam PetscCall(PetscStrallocpy(name, &mesh->distributionName)); 23123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23131d1f2f2aSksagiyam } 23141d1f2f2aSksagiyam 23151d1f2f2aSksagiyam /*@C 23161d1f2f2aSksagiyam DMPlexDistributionGetName - Retrieve the name of the specific parallel distribution 23171d1f2f2aSksagiyam 23181d1f2f2aSksagiyam Input Parameter: 23191d1f2f2aSksagiyam . dm - The DM 23201d1f2f2aSksagiyam 23211d1f2f2aSksagiyam Output Parameter: 23221d1f2f2aSksagiyam . name - The name of the specific parallel distribution 23231d1f2f2aSksagiyam 23241d1f2f2aSksagiyam Note: 23251d1f2f2aSksagiyam If distribution name is set when saving, DMPlexTopologyView() saves the plex's 23261d1f2f2aSksagiyam parallel distribution (i.e., partition, ownership, and local ordering of points) under 23271d1f2f2aSksagiyam this name. Conversely, if distribution name is set when loading, DMPlexTopologyLoad() 23281d1f2f2aSksagiyam loads the parallel distribution stored in file under this name. 23291d1f2f2aSksagiyam 23301d1f2f2aSksagiyam Level: developer 23311d1f2f2aSksagiyam 23321d1f2f2aSksagiyam .seealso: `DMPlexDistributionSetName()`, `DMPlexTopologyView()`, `DMPlexTopologyLoad()` 23331d1f2f2aSksagiyam @*/ 2334d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributionGetName(DM dm, const char *name[]) 2335d71ae5a4SJacob Faibussowitsch { 23361d1f2f2aSksagiyam DM_Plex *mesh = (DM_Plex *)dm->data; 23371d1f2f2aSksagiyam 23381d1f2f2aSksagiyam PetscFunctionBegin; 23391d1f2f2aSksagiyam PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 23401d1f2f2aSksagiyam PetscValidPointer(name, 2); 23411d1f2f2aSksagiyam *name = mesh->distributionName; 23423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23431d1f2f2aSksagiyam } 2344