xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision c6a7a37075f8bf8d34d92c4910d42445b7a3482d)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>  /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()`
203c1f0c11SLawrence Mitchell @*/
21d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetAdjacencyUser(DM dm, PetscErrorCode (*user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void *ctx)
22d71ae5a4SJacob Faibussowitsch {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency    = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
39ef1023bdSBarry Smith + user    - The callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()`
453c1f0c11SLawrence Mitchell @*/
46d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void **ctx)
47d71ae5a4SJacob Faibussowitsch {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
678b0b4c70SToby Isaac @*/
68d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
69d71ae5a4SJacob Faibussowitsch {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *)dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()`
908b0b4c70SToby Isaac @*/
91d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
92d71ae5a4SJacob Faibussowitsch {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *)dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
97064a246eSJacob Faibussowitsch   PetscValidBoolPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
102d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
103d71ae5a4SJacob Faibussowitsch {
10470034214SMatthew G. Knepley   const PetscInt *cone   = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley 
10770034214SMatthew G. Knepley   PetscFunctionBeginHot;
1089566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, p, &coneSize));
1099566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCone(dm, p, &cone));
1104b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1114b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c - 1];
11270034214SMatthew G. Knepley     const PetscInt *support = NULL;
11370034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11470034214SMatthew G. Knepley 
1159566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
1169566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, point, &support));
11770034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
118527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]), 0); ++q) {
11970034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12070034214SMatthew G. Knepley       }
12163a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
12270034214SMatthew G. Knepley     }
12370034214SMatthew G. Knepley   }
12470034214SMatthew G. Knepley   *adjSize = numAdj;
1253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12670034214SMatthew G. Knepley }
12770034214SMatthew G. Knepley 
128d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
129d71ae5a4SJacob Faibussowitsch {
13070034214SMatthew G. Knepley   const PetscInt *support = NULL;
13170034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, supportSize, s;
13270034214SMatthew G. Knepley 
13370034214SMatthew G. Knepley   PetscFunctionBeginHot;
1349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupportSize(dm, p, &supportSize));
1359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSupport(dm, p, &support));
1364b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1374b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s - 1];
13870034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
13970034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14070034214SMatthew G. Knepley 
1419566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
1429566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, point, &cone));
14370034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
144527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]), 0); ++q) {
14570034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14670034214SMatthew G. Knepley       }
14763a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
14870034214SMatthew G. Knepley     }
14970034214SMatthew G. Knepley   }
15070034214SMatthew G. Knepley   *adjSize = numAdj;
1513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15270034214SMatthew G. Knepley }
15370034214SMatthew G. Knepley 
154d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
155d71ae5a4SJacob Faibussowitsch {
15670034214SMatthew G. Knepley   PetscInt *star   = NULL;
15770034214SMatthew G. Knepley   PetscInt  numAdj = 0, maxAdjSize = *adjSize, starSize, s;
15870034214SMatthew G. Knepley 
15970034214SMatthew G. Knepley   PetscFunctionBeginHot;
1609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star));
16170034214SMatthew G. Knepley   for (s = 0; s < starSize * 2; s += 2) {
16270034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16370034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16470034214SMatthew G. Knepley 
1659566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure));
16670034214SMatthew G. Knepley     for (c = 0; c < closureSize * 2; c += 2) {
167527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]), 0); ++q) {
16870034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
16970034214SMatthew G. Knepley       }
17063a3b9bcSJacob Faibussowitsch       PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
17170034214SMatthew G. Knepley     }
1729566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure));
17370034214SMatthew G. Knepley   }
1749566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star));
17570034214SMatthew G. Knepley   *adjSize = numAdj;
1763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17770034214SMatthew G. Knepley }
17870034214SMatthew G. Knepley 
179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
180d71ae5a4SJacob Faibussowitsch {
18179bad331SMatthew G. Knepley   static PetscInt asiz       = 0;
1828b0b4c70SToby Isaac   PetscInt        maxAnchors = 1;
1838b0b4c70SToby Isaac   PetscInt        aStart = -1, aEnd = -1;
1848b0b4c70SToby Isaac   PetscInt        maxAdjSize;
1858b0b4c70SToby Isaac   PetscSection    aSec = NULL;
1868b0b4c70SToby Isaac   IS              aIS  = NULL;
1878b0b4c70SToby Isaac   const PetscInt *anchors;
1883c1f0c11SLawrence Mitchell   DM_Plex        *mesh = (DM_Plex *)dm->data;
18970034214SMatthew G. Knepley 
19070034214SMatthew G. Knepley   PetscFunctionBeginHot;
1915b317d89SToby Isaac   if (useAnchors) {
1929566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAnchors(dm, &aSec, &aIS));
1938b0b4c70SToby Isaac     if (aSec) {
1949566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetMaxDof(aSec, &maxAnchors));
19524c766afSToby Isaac       maxAnchors = PetscMax(1, maxAnchors);
1969566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(aSec, &aStart, &aEnd));
1979566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(aIS, &anchors));
1988b0b4c70SToby Isaac     }
1998b0b4c70SToby Isaac   }
20079bad331SMatthew G. Knepley   if (!*adj) {
20124c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20279bad331SMatthew G. Knepley 
2039566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
2049566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(dm, &depth));
205412e9a14SMatthew G. Knepley     depth = PetscMax(depth, -depth);
2069566063dSJacob Faibussowitsch     PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS));
20724c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC, depth + 1) - 1) / (maxC - 1)) : depth + 1;
20824c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS, depth + 1) - 1) / (maxS - 1)) : depth + 1;
20924c766afSToby Isaac     asiz          = PetscMax(PetscPowInt(maxS, depth) * coneSeries, PetscPowInt(maxC, depth) * supportSeries);
2108b0b4c70SToby Isaac     asiz *= maxAnchors;
21124c766afSToby Isaac     asiz = PetscMin(asiz, pEnd - pStart);
2129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(asiz, adj));
21379bad331SMatthew G. Knepley   }
21479bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2158b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2163c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
2179566063dSJacob Faibussowitsch     PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx));
2183c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
2199566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj));
22070034214SMatthew G. Knepley   } else if (useCone) {
2219566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj));
22270034214SMatthew G. Knepley   } else {
2239566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj));
22470034214SMatthew G. Knepley   }
2255b317d89SToby Isaac   if (useAnchors && aSec) {
2268b0b4c70SToby Isaac     PetscInt  origSize = *adjSize;
2278b0b4c70SToby Isaac     PetscInt  numAdj   = origSize;
2288b0b4c70SToby Isaac     PetscInt  i        = 0, j;
2298b0b4c70SToby Isaac     PetscInt *orig     = *adj;
2308b0b4c70SToby Isaac 
2318b0b4c70SToby Isaac     while (i < origSize) {
2328b0b4c70SToby Isaac       PetscInt p    = orig[i];
2338b0b4c70SToby Isaac       PetscInt aDof = 0;
2348b0b4c70SToby Isaac 
23548a46eb9SPierre Jolivet       if (p >= aStart && p < aEnd) PetscCall(PetscSectionGetDof(aSec, p, &aDof));
2368b0b4c70SToby Isaac       if (aDof) {
2378b0b4c70SToby Isaac         PetscInt aOff;
2388b0b4c70SToby Isaac         PetscInt s, q;
2398b0b4c70SToby Isaac 
240ad540459SPierre Jolivet         for (j = i + 1; j < numAdj; j++) orig[j - 1] = orig[j];
2418b0b4c70SToby Isaac         origSize--;
2428b0b4c70SToby Isaac         numAdj--;
2439566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(aSec, p, &aOff));
2448b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
245527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff + s]), 0); ++q) {
2468b0b4c70SToby Isaac             if (anchors[aOff + s] == orig[q]) break;
2478b0b4c70SToby Isaac           }
24863a3b9bcSJacob Faibussowitsch           PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize);
2498b0b4c70SToby Isaac         }
2509371c9d4SSatish Balay       } else {
2518b0b4c70SToby Isaac         i++;
2528b0b4c70SToby Isaac       }
2538b0b4c70SToby Isaac     }
2548b0b4c70SToby Isaac     *adjSize = numAdj;
2559566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(aIS, &anchors));
2568b0b4c70SToby Isaac   }
2573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25870034214SMatthew G. Knepley }
25970034214SMatthew G. Knepley 
26070034214SMatthew G. Knepley /*@
26170034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
26270034214SMatthew G. Knepley 
26370034214SMatthew G. Knepley   Input Parameters:
26470034214SMatthew G. Knepley + dm - The DM object
2656b867d5aSJose E. Roman - p  - The point
26670034214SMatthew G. Knepley 
2676b867d5aSJose E. Roman   Input/Output Parameters:
2686b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE;
2696b867d5aSJose E. Roman             on output the number of adjacent points
2706b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize;
2716b867d5aSJose E. Roman         on output contains the adjacent points
27270034214SMatthew G. Knepley 
27370034214SMatthew G. Knepley   Level: advanced
27470034214SMatthew G. Knepley 
27595452b02SPatrick Sanan   Notes:
27695452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
27770034214SMatthew G. Knepley 
278db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()`
27970034214SMatthew G. Knepley @*/
280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
281d71ae5a4SJacob Faibussowitsch {
2821cf84007SMatthew G. Knepley   PetscBool useCone, useClosure, useAnchors;
28370034214SMatthew G. Knepley 
28470034214SMatthew G. Knepley   PetscFunctionBeginHot;
28570034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
286dadcf809SJacob Faibussowitsch   PetscValidIntPointer(adjSize, 3);
28770034214SMatthew G. Knepley   PetscValidPointer(adj, 4);
2889566063dSJacob Faibussowitsch   PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
2899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
2909566063dSJacob Faibussowitsch   PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj));
2913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29270034214SMatthew G. Knepley }
29308633170SToby Isaac 
294b0a623aaSMatthew G. Knepley /*@
295b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
296b0a623aaSMatthew G. Knepley 
297d083f849SBarry Smith   Collective on dm
298b0a623aaSMatthew G. Knepley 
299b0a623aaSMatthew G. Knepley   Input Parameters:
300b0a623aaSMatthew G. Knepley + dm      - The DM
3016b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity
3026b867d5aSJose E. Roman . rootRankSection -
3036b867d5aSJose E. Roman . rootRanks -
3046b867d5aSJose E. Roman . leftRankSection -
3056b867d5aSJose E. Roman - leafRanks -
306b0a623aaSMatthew G. Knepley 
307b0a623aaSMatthew G. Knepley   Output Parameters:
308b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
309b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
310b0a623aaSMatthew G. Knepley 
311b0a623aaSMatthew G. Knepley   Level: developer
312b0a623aaSMatthew G. Knepley 
313db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()`
314b0a623aaSMatthew G. Knepley @*/
315d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
316d71ae5a4SJacob Faibussowitsch {
317b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
318b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
319b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
320b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
321b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
322b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
323b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3249852e123SBarry Smith   PetscMPIInt        size, proc, rank;
325b0a623aaSMatthew G. Knepley 
326b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
327b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
328b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
329ad540459SPierre Jolivet   if (processRanks) PetscValidPointer(processRanks, 7);
330ad540459SPierre Jolivet   if (sfProcess) PetscValidPointer(sfProcess, 8);
3319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
3329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
3339566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints));
3349566063dSJacob Faibussowitsch   PetscCall(PetscBTCreate(size, &neighbors));
3359566063dSJacob Faibussowitsch   PetscCall(PetscBTMemzero(size, neighbors));
336b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
3379566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootRanks, &nranks));
339b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
340b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
341b0a623aaSMatthew G. Knepley 
3429566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof));
3439566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff));
3449566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n]));
345b0a623aaSMatthew G. Knepley   }
3469566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootRanks, &nranks));
347b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
3489566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd));
3499566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafRanks, &nranks));
350b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
351b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
352b0a623aaSMatthew G. Knepley 
3539566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof));
3549566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff));
3559566063dSJacob Faibussowitsch     for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n]));
356b0a623aaSMatthew G. Knepley   }
3579566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafRanks, &nranks));
358b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
3593ba16761SJacob Faibussowitsch   for (l = 0; l < numLeaves; ++l) PetscCall(PetscBTSet(neighbors, remotePoints[l].rank));
360b0a623aaSMatthew G. Knepley   /* Calculate edges */
3613ba16761SJacob Faibussowitsch   PetscCall(PetscBTClear(neighbors, rank));
3629371c9d4SSatish Balay   for (proc = 0, numNeighbors = 0; proc < size; ++proc) {
3639371c9d4SSatish Balay     if (PetscBTLookup(neighbors, proc)) ++numNeighbors;
3649371c9d4SSatish Balay   }
3659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &ranksNew));
3669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &localPointsNew));
3679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew));
3689852e123SBarry Smith   for (proc = 0, n = 0; proc < size; ++proc) {
369b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
370b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
371b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
372b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
373b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
374b0a623aaSMatthew G. Knepley       ++n;
375b0a623aaSMatthew G. Knepley     }
376b0a623aaSMatthew G. Knepley   }
3779566063dSJacob Faibussowitsch   PetscCall(PetscBTDestroy(&neighbors));
3789566063dSJacob Faibussowitsch   if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks));
3799566063dSJacob Faibussowitsch   else PetscCall(PetscFree(ranksNew));
380b0a623aaSMatthew G. Knepley   if (sfProcess) {
3819566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess));
3829566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*sfProcess, "Two-Sided Process SF"));
3839566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(*sfProcess));
3849566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER));
385b0a623aaSMatthew G. Knepley   }
3863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
387b0a623aaSMatthew G. Knepley }
388b0a623aaSMatthew G. Knepley 
389b0a623aaSMatthew G. Knepley /*@
390b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
391b0a623aaSMatthew G. Knepley 
392d083f849SBarry Smith   Collective on dm
393b0a623aaSMatthew G. Knepley 
394b0a623aaSMatthew G. Knepley   Input Parameter:
395b0a623aaSMatthew G. Knepley . dm - The DM
396b0a623aaSMatthew G. Knepley 
397b0a623aaSMatthew G. Knepley   Output Parameters:
398b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
399b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
400b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
401b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
402b0a623aaSMatthew G. Knepley 
403b0a623aaSMatthew G. Knepley   Level: developer
404b0a623aaSMatthew G. Knepley 
405db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
406b0a623aaSMatthew G. Knepley @*/
407d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
408d71ae5a4SJacob Faibussowitsch {
409b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
410b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
411b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
412b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
413b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
414b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
415b0a623aaSMatthew G. Knepley 
416b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4179566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4189566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
4199566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
4209566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
421b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
4229566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)rootSection, "Root Section"));
4239566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd));
4249566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree));
4259566063dSJacob Faibussowitsch   PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree));
4269566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p - pStart]));
4279566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(rootSection));
428b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
4299566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(rootSection, &nedges));
4309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pEnd - pStart, &myrank));
4319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nedges, &remoterank));
432b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd - pStart; ++p) myrank[p] = rank;
4339566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank));
4349566063dSJacob Faibussowitsch   PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank));
4359566063dSJacob Faibussowitsch   PetscCall(PetscFree(myrank));
4369566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank));
437b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
4389566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)leafSection, "Leaf Section"));
4399566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank));
4403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
441b0a623aaSMatthew G. Knepley }
442b0a623aaSMatthew G. Knepley 
443278397a0SMatthew G. Knepley /*@C
444c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes
445b0a623aaSMatthew G. Knepley 
446d083f849SBarry Smith   Collective on dm
447b0a623aaSMatthew G. Knepley 
448b0a623aaSMatthew G. Knepley   Input Parameters:
449b0a623aaSMatthew G. Knepley + dm          - The DM
45024d039d7SMichael Lange . levels      - Number of overlap levels
451b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
452b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
453b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
454b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
455b0a623aaSMatthew G. Knepley 
456064ec1f3Sprj-   Output Parameter:
457b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
458b0a623aaSMatthew G. Knepley 
459b0a623aaSMatthew G. Knepley   Level: developer
460b0a623aaSMatthew G. Knepley 
461c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
462b0a623aaSMatthew G. Knepley @*/
463d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
464d71ae5a4SJacob Faibussowitsch {
465e540f424SMichael Lange   MPI_Comm           comm;
466b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
467874ddda9SLisandro Dalcin   PetscSF            sfPoint;
468b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
469b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4701fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
471b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4721fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4739852e123SBarry Smith   PetscMPIInt        rank, size;
47431bc6364SLisandro Dalcin   PetscBool          flg;
475b0a623aaSMatthew G. Knepley 
476b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4776ba1a4c7SVaclav Hapla   *ovLabel = NULL;
4789566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
4813ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
4829566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
4839566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
484d1674c6dSMatthew Knepley   if (!levels) {
485d1674c6dSMatthew Knepley     /* Add owned points */
4869566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
4879566063dSJacob Faibussowitsch     for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
4883ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
489d1674c6dSMatthew Knepley   }
4909566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
4919566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
4929566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
493b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
494b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
495b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
496b0a623aaSMatthew G. Knepley 
4979566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj));
4989566063dSJacob Faibussowitsch     for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank));
499b0a623aaSMatthew G. Knepley   }
5009566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rootrank, &rrank));
5019566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(leafrank, &nrank));
502b0a623aaSMatthew G. Knepley   /* Handle roots */
503b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
504b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
505b0a623aaSMatthew G. Knepley 
506b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
507b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
5089566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(leafSection, p, &neighbors));
509b0a623aaSMatthew G. Knepley       if (neighbors) {
5109566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(leafSection, p, &noff));
5119566063dSJacob Faibussowitsch         PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
512b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
513b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff + n];
514b0a623aaSMatthew G. Knepley 
515b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
5169566063dSJacob Faibussowitsch           for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
517b0a623aaSMatthew G. Knepley         }
518b0a623aaSMatthew G. Knepley       }
519b0a623aaSMatthew G. Knepley     }
520b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
5219566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(rootSection, p, &neighbors));
522b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
5239566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(rootSection, p, &noff));
5249566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
525b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
526b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff + n];
527b0a623aaSMatthew G. Knepley 
528b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
5299566063dSJacob Faibussowitsch       for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
530b0a623aaSMatthew G. Knepley     }
531b0a623aaSMatthew G. Knepley   }
5329566063dSJacob Faibussowitsch   PetscCall(PetscFree(adj));
5339566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rootrank, &rrank));
5349566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(leafrank, &nrank));
53524d039d7SMichael Lange   /* Add additional overlap levels */
536be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
537be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
5389566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank));
539be200f8dSMichael Lange     /* Add next level of point donations to the label */
5409566063dSJacob Faibussowitsch     PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank));
541be200f8dSMichael Lange   }
54226a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5439566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
5449566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg));
545e540f424SMichael Lange   if (flg) {
546825f8a23SLisandro Dalcin     PetscViewer viewer;
5479566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
5489566063dSJacob Faibussowitsch     PetscCall(DMLabelView(ovAdjByRank, viewer));
549b0a623aaSMatthew G. Knepley   }
550874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
5519566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
5529566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
553a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
5549566063dSJacob Faibussowitsch   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
555e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
5569566063dSJacob Faibussowitsch     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
5579566063dSJacob Faibussowitsch     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
558e540f424SMichael Lange   }
559e540f424SMichael Lange   /* Clean up */
5609566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&ovAdjByRank));
5613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
562b0a623aaSMatthew G. Knepley }
56370034214SMatthew G. Knepley 
564d71ae5a4SJacob Faibussowitsch static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank)
565d71ae5a4SJacob Faibussowitsch {
566c506a872SMatthew G. Knepley   PetscInt neighbors, el;
567c506a872SMatthew G. Knepley 
568c506a872SMatthew G. Knepley   PetscFunctionBegin;
569c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetDof(section, p, &neighbors));
570c506a872SMatthew G. Knepley   if (neighbors) {
571c506a872SMatthew G. Knepley     PetscInt   *adj     = NULL;
572c506a872SMatthew G. Knepley     PetscInt    adjSize = PETSC_DETERMINE, noff, n, a;
573c506a872SMatthew G. Knepley     PetscMPIInt rank;
574c506a872SMatthew G. Knepley 
575c506a872SMatthew G. Knepley     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
576c506a872SMatthew G. Knepley     PetscCall(PetscSectionGetOffset(section, p, &noff));
577c506a872SMatthew G. Knepley     PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
578c506a872SMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
579c506a872SMatthew G. Knepley       const PetscInt remoteRank = ranks[noff + n];
580c506a872SMatthew G. Knepley 
581c506a872SMatthew G. Knepley       if (remoteRank == rank) continue;
582c506a872SMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {
583c506a872SMatthew G. Knepley         PetscBool insert = PETSC_TRUE;
584c506a872SMatthew G. Knepley 
585c506a872SMatthew G. Knepley         for (el = 0; el < numExLabels; ++el) {
586c506a872SMatthew G. Knepley           PetscInt exVal;
587c506a872SMatthew G. Knepley           PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
5889371c9d4SSatish Balay           if (exVal == exValue[el]) {
5899371c9d4SSatish Balay             insert = PETSC_FALSE;
5909371c9d4SSatish Balay             break;
5919371c9d4SSatish Balay           }
592c506a872SMatthew G. Knepley         }
593c506a872SMatthew G. Knepley         if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
594c506a872SMatthew G. Knepley       }
595c506a872SMatthew G. Knepley     }
596f88a03deSMatthew G. Knepley     PetscCall(PetscFree(adj));
597c506a872SMatthew G. Knepley   }
5983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
599c506a872SMatthew G. Knepley }
600c506a872SMatthew G. Knepley 
601c506a872SMatthew G. Knepley /*@C
602c506a872SMatthew G. Knepley   DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes
603c506a872SMatthew G. Knepley 
604c506a872SMatthew G. Knepley   Collective on dm
605c506a872SMatthew G. Knepley 
606c506a872SMatthew G. Knepley   Input Parameters:
607c506a872SMatthew G. Knepley + dm          - The DM
608c506a872SMatthew G. Knepley . numLabels   - The number of labels to draw candidate points from
609c506a872SMatthew G. Knepley . label       - An array of labels containing candidate points
610c506a872SMatthew G. Knepley . value       - An array of label values marking the candidate points
611c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion
612c506a872SMatthew G. Knepley . exLabel     - An array of labels indicating points to be excluded, or NULL
613c506a872SMatthew G. Knepley . exValue     - An array of label values to be excluded, or NULL
614c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point
615c506a872SMatthew G. Knepley . rootrank    - The rank of each edge into the root point
616c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
617c506a872SMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
618c506a872SMatthew G. Knepley 
619c506a872SMatthew G. Knepley   Output Parameter:
620c506a872SMatthew G. Knepley . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
621c506a872SMatthew G. Knepley 
622c506a872SMatthew G. Knepley   Note:
623c506a872SMatthew G. Knepley   The candidate points are only added to the overlap if they are adjacent to a shared point
624c506a872SMatthew G. Knepley 
625c506a872SMatthew G. Knepley   Level: developer
626c506a872SMatthew G. Knepley 
627c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()`
628c506a872SMatthew G. Knepley @*/
629d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
630d71ae5a4SJacob Faibussowitsch {
631c506a872SMatthew G. Knepley   MPI_Comm           comm;
632c506a872SMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
633c506a872SMatthew G. Knepley   PetscSF            sfPoint;
634c506a872SMatthew G. Knepley   const PetscSFNode *remote;
635c506a872SMatthew G. Knepley   const PetscInt    *local;
636c506a872SMatthew G. Knepley   const PetscInt    *nrank, *rrank;
637c506a872SMatthew G. Knepley   PetscInt          *adj = NULL;
638c506a872SMatthew G. Knepley   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l, el;
639c506a872SMatthew G. Knepley   PetscMPIInt        rank, size;
640c506a872SMatthew G. Knepley   PetscBool          flg;
641c506a872SMatthew G. Knepley 
642c506a872SMatthew G. Knepley   PetscFunctionBegin;
643c506a872SMatthew G. Knepley   *ovLabel = NULL;
644c506a872SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
645c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
646c506a872SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
6473ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
648c506a872SMatthew G. Knepley   PetscCall(DMGetPointSF(dm, &sfPoint));
649c506a872SMatthew G. Knepley   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
650c506a872SMatthew G. Knepley   PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd));
651c506a872SMatthew G. Knepley   PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote));
652c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank));
653c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(rootrank, &rrank));
654c506a872SMatthew G. Knepley   PetscCall(ISGetIndices(leafrank, &nrank));
655c506a872SMatthew G. Knepley   for (l = 0; l < numLabels; ++l) {
656c506a872SMatthew G. Knepley     IS              valIS;
657c506a872SMatthew G. Knepley     const PetscInt *points;
658c506a872SMatthew G. Knepley     PetscInt        n;
659c506a872SMatthew G. Knepley 
660c506a872SMatthew G. Knepley     PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS));
661c506a872SMatthew G. Knepley     if (!valIS) continue;
662c506a872SMatthew G. Knepley     PetscCall(ISGetIndices(valIS, &points));
663c506a872SMatthew G. Knepley     PetscCall(ISGetLocalSize(valIS, &n));
664c506a872SMatthew G. Knepley     for (PetscInt i = 0; i < n; ++i) {
665c506a872SMatthew G. Knepley       const PetscInt p = points[i];
666c506a872SMatthew G. Knepley 
667c506a872SMatthew G. Knepley       if ((p >= sStart) && (p < sEnd)) {
668c506a872SMatthew G. Knepley         PetscInt loc, adjSize = PETSC_DETERMINE;
669c506a872SMatthew G. Knepley 
670c506a872SMatthew G. Knepley         /* Handle leaves: shared with the root point */
671c506a872SMatthew G. Knepley         if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc));
672c506a872SMatthew G. Knepley         else loc = (p >= 0 && p < nleaves) ? p : -1;
673c506a872SMatthew G. Knepley         if (loc >= 0) {
674c506a872SMatthew G. Knepley           const PetscInt remoteRank = remote[loc].rank;
675c506a872SMatthew G. Knepley 
676c506a872SMatthew G. Knepley           PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj));
677c506a872SMatthew G. Knepley           for (PetscInt a = 0; a < adjSize; ++a) {
678c506a872SMatthew G. Knepley             PetscBool insert = PETSC_TRUE;
679c506a872SMatthew G. Knepley 
680c506a872SMatthew G. Knepley             for (el = 0; el < numExLabels; ++el) {
681c506a872SMatthew G. Knepley               PetscInt exVal;
682c506a872SMatthew G. Knepley               PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal));
6839371c9d4SSatish Balay               if (exVal == exValue[el]) {
6849371c9d4SSatish Balay                 insert = PETSC_FALSE;
6859371c9d4SSatish Balay                 break;
6869371c9d4SSatish Balay               }
687c506a872SMatthew G. Knepley             }
688c506a872SMatthew G. Knepley             if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank));
689c506a872SMatthew G. Knepley           }
690c506a872SMatthew G. Knepley         }
691c506a872SMatthew G. Knepley         /* Some leaves share a root with other leaves on different processes */
6923ba16761SJacob Faibussowitsch         PetscCall(HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank));
693c506a872SMatthew G. Knepley       }
694c506a872SMatthew G. Knepley       /* Roots are shared with leaves */
6953ba16761SJacob Faibussowitsch       PetscCall(HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank));
696c506a872SMatthew G. Knepley     }
697c506a872SMatthew G. Knepley     PetscCall(ISRestoreIndices(valIS, &points));
698c506a872SMatthew G. Knepley     PetscCall(ISDestroy(&valIS));
699c506a872SMatthew G. Knepley   }
700c506a872SMatthew G. Knepley   PetscCall(PetscFree(adj));
701c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(rootrank, &rrank));
702c506a872SMatthew G. Knepley   PetscCall(ISRestoreIndices(leafrank, &nrank));
703c506a872SMatthew G. Knepley   /* We require the closure in the overlap */
704c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank));
705c506a872SMatthew G. Knepley   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg));
706c506a872SMatthew G. Knepley   if (flg) {
707c506a872SMatthew G. Knepley     PetscViewer viewer;
708c506a872SMatthew G. Knepley     PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer));
709c506a872SMatthew G. Knepley     PetscCall(DMLabelView(ovAdjByRank, viewer));
710c506a872SMatthew G. Knepley   }
711c506a872SMatthew G. Knepley   /* Invert sender to receiver label */
712c506a872SMatthew G. Knepley   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel));
713c506a872SMatthew G. Knepley   PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel));
714c506a872SMatthew G. Knepley   /* Add owned points, except for shared local points */
715c506a872SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank));
716c506a872SMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
717c506a872SMatthew G. Knepley     PetscCall(DMLabelClearValue(*ovLabel, local[l], rank));
718c506a872SMatthew G. Knepley     PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank));
719c506a872SMatthew G. Knepley   }
720c506a872SMatthew G. Knepley   /* Clean up */
721c506a872SMatthew G. Knepley   PetscCall(DMLabelDestroy(&ovAdjByRank));
7223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
723c506a872SMatthew G. Knepley }
724c506a872SMatthew G. Knepley 
72524cc2ca5SMatthew G. Knepley /*@C
72624cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
72724cc2ca5SMatthew G. Knepley 
728d083f849SBarry Smith   Collective on dm
72924cc2ca5SMatthew G. Knepley 
73024cc2ca5SMatthew G. Knepley   Input Parameters:
73124cc2ca5SMatthew G. Knepley + dm          - The DM
73224cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
73324cc2ca5SMatthew G. Knepley 
734064ec1f3Sprj-   Output Parameter:
735a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
73624cc2ca5SMatthew G. Knepley 
73724cc2ca5SMatthew G. Knepley   Level: developer
73824cc2ca5SMatthew G. Knepley 
739db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()`
74024cc2ca5SMatthew G. Knepley @*/
741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
742d71ae5a4SJacob Faibussowitsch {
74346f9b1c3SMichael Lange   MPI_Comm           comm;
7449852e123SBarry Smith   PetscMPIInt        rank, size;
74546f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
74646f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
74746f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
74846f9b1c3SMichael Lange   PetscSFNode       *iremote;
74946f9b1c3SMichael Lange   PetscSF            pointSF;
75046f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
75146f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
75246f9b1c3SMichael Lange 
75346f9b1c3SMichael Lange   PetscFunctionBegin;
75446f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7559566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
7569566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
7579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
7589566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
75946f9b1c3SMichael Lange 
76046f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
7619566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote));
7629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
76346f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
7649566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
76546f9b1c3SMichael Lange     for (p = pStart; p < pEnd; p++) pointDepths[p] = d;
76646f9b1c3SMichael Lange   }
76746f9b1c3SMichael Lange   for (p = 0; p < nleaves; p++) remoteDepths[p] = -1;
7689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE));
7699566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE));
77046f9b1c3SMichael Lange 
7712d4ee042Sprj-   /* Count received points in each stratum and compute the internal strata shift */
7729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim + 1, &depthRecv, dim + 1, &depthShift, dim + 1, &depthIdx));
77346f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) depthRecv[d] = 0;
77446f9b1c3SMichael Lange   for (p = 0; p < nleaves; p++) depthRecv[remoteDepths[p]]++;
77546f9b1c3SMichael Lange   depthShift[dim] = 0;
77646f9b1c3SMichael Lange   for (d = 0; d < dim; d++) depthShift[d] = depthRecv[dim];
77746f9b1c3SMichael Lange   for (d = 1; d < dim; d++) depthShift[d] += depthRecv[0];
77846f9b1c3SMichael Lange   for (d = dim - 2; d > 0; d--) depthShift[d] += depthRecv[d + 1];
77946f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
7809566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
78146f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
78246f9b1c3SMichael Lange   }
78346f9b1c3SMichael Lange 
78446f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
7859566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
78646f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
7879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &ilocal));
7889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(newLeaves, &iremote));
78946f9b1c3SMichael Lange   /* First map local points to themselves */
79046f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
7919566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
79246f9b1c3SMichael Lange     for (p = pStart; p < pEnd; p++) {
79346f9b1c3SMichael Lange       point                = p + depthShift[d];
79446f9b1c3SMichael Lange       ilocal[point]        = point;
79546f9b1c3SMichael Lange       iremote[point].index = p;
79646f9b1c3SMichael Lange       iremote[point].rank  = rank;
79746f9b1c3SMichael Lange       depthIdx[d]++;
79846f9b1c3SMichael Lange     }
79946f9b1c3SMichael Lange   }
80046f9b1c3SMichael Lange 
80146f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
8029566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &pointSF));
8039566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote));
80446f9b1c3SMichael Lange   for (d = 0; d < dim + 1; d++) {
8059566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
80646f9b1c3SMichael Lange     for (p = 0; p < numSharedPoints; p++) {
80746f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
80846f9b1c3SMichael Lange         point                = sharedLocal[p] + depthShift[d];
80946f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
81046f9b1c3SMichael Lange         iremote[point].rank  = sharedRemote[p].rank;
81146f9b1c3SMichael Lange       }
81246f9b1c3SMichael Lange     }
81346f9b1c3SMichael Lange   }
81446f9b1c3SMichael Lange 
81546f9b1c3SMichael Lange   /* Now add the incoming overlap points */
81646f9b1c3SMichael Lange   for (p = 0; p < nleaves; p++) {
81746f9b1c3SMichael Lange     point                = depthIdx[remoteDepths[p]];
81846f9b1c3SMichael Lange     ilocal[point]        = point;
81946f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
82046f9b1c3SMichael Lange     iremote[point].rank  = overlapRemote[p].rank;
82146f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
82246f9b1c3SMichael Lange   }
8239566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths, remoteDepths));
82446f9b1c3SMichael Lange 
8259566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
8269566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Overlap Migration SF"));
8279566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*migrationSF));
8289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
8299566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, pEnd - pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
83046f9b1c3SMichael Lange 
8319566063dSJacob Faibussowitsch   PetscCall(PetscFree3(depthRecv, depthShift, depthIdx));
8323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83370034214SMatthew G. Knepley }
83470034214SMatthew G. Knepley 
835a9f1d5b2SMichael Lange /*@
836f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
837a9f1d5b2SMichael Lange 
838064ec1f3Sprj-   Input Parameters:
839a9f1d5b2SMichael Lange + dm          - The DM
840a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
841a9f1d5b2SMichael Lange 
842a9f1d5b2SMichael Lange   Output Parameter:
843a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
844a9f1d5b2SMichael Lange 
845412e9a14SMatthew G. Knepley   Note:
846412e9a14SMatthew G. Knepley   This lexicographically sorts by (depth, cellType)
847412e9a14SMatthew G. Knepley 
848a9f1d5b2SMichael Lange   Level: developer
849a9f1d5b2SMichael Lange 
850db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
851a9f1d5b2SMichael Lange @*/
852d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
853d71ae5a4SJacob Faibussowitsch {
854a9f1d5b2SMichael Lange   MPI_Comm           comm;
8559852e123SBarry Smith   PetscMPIInt        rank, size;
856412e9a14SMatthew G. Knepley   PetscInt           d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves;
857412e9a14SMatthew G. Knepley   PetscSFNode       *pointDepths, *remoteDepths;
858412e9a14SMatthew G. Knepley   PetscInt          *ilocal;
859a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
860412e9a14SMatthew G. Knepley   PetscInt          *ctRecv, *ctShift, *ctIdx;
861a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
862a9f1d5b2SMichael Lange 
863a9f1d5b2SMichael Lange   PetscFunctionBegin;
864a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
8669566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
8679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
8689566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &ldepth));
8699566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
8701c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm));
87163a3b9bcSJacob Faibussowitsch   PetscCheck(!(ldepth >= 0) || !(depth != ldepth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth);
8729566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF, dm, 0, 0, 0));
873a9f1d5b2SMichael Lange 
874a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
8759566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote));
8769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths));
8777fab53ddSMatthew G. Knepley   for (d = 0; d < depth + 1; ++d) {
8789566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
879f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
880412e9a14SMatthew G. Knepley       DMPolytopeType ct;
881f0e73a3dSToby Isaac 
8829566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, p, &ct));
883412e9a14SMatthew G. Knepley       pointDepths[p].index = d;
884412e9a14SMatthew G. Knepley       pointDepths[p].rank  = ct;
885f0e73a3dSToby Isaac     }
886412e9a14SMatthew G. Knepley   }
8879371c9d4SSatish Balay   for (p = 0; p < nleaves; ++p) {
8889371c9d4SSatish Balay     remoteDepths[p].index = -1;
8899371c9d4SSatish Balay     remoteDepths[p].rank  = -1;
8909371c9d4SSatish Balay   }
8919566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE));
8929566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE));
893412e9a14SMatthew G. Knepley   /* Count received points in each stratum and compute the internal strata shift */
8949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc6(depth + 1, &depthRecv, depth + 1, &depthShift, depth + 1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx));
895412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
896412e9a14SMatthew G. Knepley     if (remoteDepths[p].rank < 0) {
897412e9a14SMatthew G. Knepley       ++depthRecv[remoteDepths[p].index];
898412e9a14SMatthew G. Knepley     } else {
899412e9a14SMatthew G. Knepley       ++ctRecv[remoteDepths[p].rank];
900412e9a14SMatthew G. Knepley     }
901412e9a14SMatthew G. Knepley   }
902412e9a14SMatthew G. Knepley   {
903412e9a14SMatthew G. Knepley     PetscInt depths[4], dims[4], shift = 0, i, c;
904412e9a14SMatthew G. Knepley 
9058238f61eSMatthew G. Knepley     /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1)
9068238f61eSMatthew G. Knepley          Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells
9078238f61eSMatthew G. Knepley      */
9089371c9d4SSatish Balay     depths[0] = depth;
9099371c9d4SSatish Balay     depths[1] = 0;
9109371c9d4SSatish Balay     depths[2] = depth - 1;
9119371c9d4SSatish Balay     depths[3] = 1;
9129371c9d4SSatish Balay     dims[0]   = dim;
9139371c9d4SSatish Balay     dims[1]   = 0;
9149371c9d4SSatish Balay     dims[2]   = dim - 1;
9159371c9d4SSatish Balay     dims[3]   = 1;
916412e9a14SMatthew G. Knepley     for (i = 0; i <= depth; ++i) {
917412e9a14SMatthew G. Knepley       const PetscInt dep = depths[i];
918412e9a14SMatthew G. Knepley       const PetscInt dim = dims[i];
919412e9a14SMatthew G. Knepley 
920412e9a14SMatthew G. Knepley       for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
9218238f61eSMatthew G. Knepley         if (DMPolytopeTypeGetDim((DMPolytopeType)c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue;
922412e9a14SMatthew G. Knepley         ctShift[c] = shift;
923412e9a14SMatthew G. Knepley         shift += ctRecv[c];
924412e9a14SMatthew G. Knepley       }
925412e9a14SMatthew G. Knepley       depthShift[dep] = shift;
926412e9a14SMatthew G. Knepley       shift += depthRecv[dep];
927412e9a14SMatthew G. Knepley     }
928412e9a14SMatthew G. Knepley     for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
929412e9a14SMatthew G. Knepley       const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType)c);
930412e9a14SMatthew G. Knepley 
9318238f61eSMatthew G. Knepley       if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) {
932412e9a14SMatthew G. Knepley         ctShift[c] = shift;
933412e9a14SMatthew G. Knepley         shift += ctRecv[c];
934412e9a14SMatthew G. Knepley       }
935412e9a14SMatthew G. Knepley     }
936412e9a14SMatthew G. Knepley   }
937a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
9389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &ilocal));
9397fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
940412e9a14SMatthew G. Knepley     const PetscInt       dep = remoteDepths[p].index;
941412e9a14SMatthew G. Knepley     const DMPolytopeType ct  = (DMPolytopeType)remoteDepths[p].rank;
9427fab53ddSMatthew G. Knepley 
943412e9a14SMatthew G. Knepley     if ((PetscInt)ct < 0) {
9447fab53ddSMatthew G. Knepley       ilocal[p] = depthShift[dep] + depthIdx[dep];
945412e9a14SMatthew G. Knepley       ++depthIdx[dep];
946412e9a14SMatthew G. Knepley     } else {
947412e9a14SMatthew G. Knepley       ilocal[p] = ctShift[ct] + ctIdx[ct];
948412e9a14SMatthew G. Knepley       ++ctIdx[ct];
949412e9a14SMatthew G. Knepley     }
950a9f1d5b2SMichael Lange   }
9519566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, migrationSF));
9529566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Migration SF"));
9539566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES));
9549566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pointDepths, remoteDepths));
9559566063dSJacob Faibussowitsch   PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx));
9569566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF, dm, 0, 0, 0));
9573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
958a9f1d5b2SMichael Lange }
959a9f1d5b2SMichael Lange 
96070034214SMatthew G. Knepley /*@
96170034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
96270034214SMatthew G. Knepley 
963d083f849SBarry Smith   Collective on dm
96470034214SMatthew G. Knepley 
96570034214SMatthew G. Knepley   Input Parameters:
96670034214SMatthew G. Knepley + dm - The DMPlex object
96770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
96870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
969cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
97070034214SMatthew G. Knepley 
97170034214SMatthew G. Knepley   Output Parameters:
97270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
973cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
97470034214SMatthew G. Knepley 
97570034214SMatthew G. Knepley   Level: developer
97670034214SMatthew G. Knepley 
977db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()`
97870034214SMatthew G. Knepley @*/
979d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
980d71ae5a4SJacob Faibussowitsch {
98170034214SMatthew G. Knepley   PetscSF      fieldSF;
98270034214SMatthew G. Knepley   PetscInt    *remoteOffsets, fieldSize;
98370034214SMatthew G. Knepley   PetscScalar *originalValues, *newValues;
98470034214SMatthew G. Knepley 
98570034214SMatthew G. Knepley   PetscFunctionBegin;
9869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0));
9879566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
98870034214SMatthew G. Knepley 
9899566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
9909566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE));
9919566063dSJacob Faibussowitsch   PetscCall(VecSetType(newVec, dm->vectype));
99270034214SMatthew G. Knepley 
9939566063dSJacob Faibussowitsch   PetscCall(VecGetArray(originalVec, &originalValues));
9949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(newVec, &newValues));
9959566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
9969566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
9979566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE));
9989566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE));
9999566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10009566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(newVec, &newValues));
10019566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(originalVec, &originalValues));
10029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0));
10033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
100470034214SMatthew G. Knepley }
100570034214SMatthew G. Knepley 
100670034214SMatthew G. Knepley /*@
100770034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
100870034214SMatthew G. Knepley 
1009d083f849SBarry Smith   Collective on dm
101070034214SMatthew G. Knepley 
101170034214SMatthew G. Knepley   Input Parameters:
101270034214SMatthew G. Knepley + dm - The DMPlex object
101370034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
101470034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
101570034214SMatthew G. Knepley - originalIS - The existing data
101670034214SMatthew G. Knepley 
101770034214SMatthew G. Knepley   Output Parameters:
101870034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
101970034214SMatthew G. Knepley - newIS - The new data
102070034214SMatthew G. Knepley 
102170034214SMatthew G. Knepley   Level: developer
102270034214SMatthew G. Knepley 
1023db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()`
102470034214SMatthew G. Knepley @*/
1025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
1026d71ae5a4SJacob Faibussowitsch {
102770034214SMatthew G. Knepley   PetscSF         fieldSF;
102870034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
102970034214SMatthew G. Knepley   const PetscInt *originalValues;
103070034214SMatthew G. Knepley 
103170034214SMatthew G. Knepley   PetscFunctionBegin;
10329566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0));
10339566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
103470034214SMatthew G. Knepley 
10359566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(fieldSize, &newValues));
103770034214SMatthew G. Knepley 
10389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(originalIS, &originalValues));
10399566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10409566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10419566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE));
10429566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE));
10439566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10449566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(originalIS, &originalValues));
10459566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS));
10469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0));
10473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
104870034214SMatthew G. Knepley }
104970034214SMatthew G. Knepley 
105070034214SMatthew G. Knepley /*@
105170034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
105270034214SMatthew G. Knepley 
1053d083f849SBarry Smith   Collective on dm
105470034214SMatthew G. Knepley 
105570034214SMatthew G. Knepley   Input Parameters:
105670034214SMatthew G. Knepley + dm - The DMPlex object
105770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
105870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
105970034214SMatthew G. Knepley . datatype - The type of data
106070034214SMatthew G. Knepley - originalData - The existing data
106170034214SMatthew G. Knepley 
106270034214SMatthew G. Knepley   Output Parameters:
106370034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
106470034214SMatthew G. Knepley - newData - The new data
106570034214SMatthew G. Knepley 
106670034214SMatthew G. Knepley   Level: developer
106770034214SMatthew G. Knepley 
1068db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`
106970034214SMatthew G. Knepley @*/
1070d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
1071d71ae5a4SJacob Faibussowitsch {
107270034214SMatthew G. Knepley   PetscSF     fieldSF;
107370034214SMatthew G. Knepley   PetscInt   *remoteOffsets, fieldSize;
107470034214SMatthew G. Knepley   PetscMPIInt dataSize;
107570034214SMatthew G. Knepley 
107670034214SMatthew G. Knepley   PetscFunctionBegin;
10779566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeData, dm, 0, 0, 0));
10789566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection));
107970034214SMatthew G. Knepley 
10809566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize));
10819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_size(datatype, &dataSize));
10829566063dSJacob Faibussowitsch   PetscCall(PetscMalloc(fieldSize * dataSize, newData));
108370034214SMatthew G. Knepley 
10849566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF));
10859566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
10869566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData, MPI_REPLACE));
10879566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData, MPI_REPLACE));
10889566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&fieldSF));
10899566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeData, dm, 0, 0, 0));
10903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
109170034214SMatthew G. Knepley }
109270034214SMatthew G. Knepley 
1093d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1094d71ae5a4SJacob Faibussowitsch {
1095cc71bff1SMichael Lange   DM_Plex     *pmesh = (DM_Plex *)(dmParallel)->data;
1096cc71bff1SMichael Lange   MPI_Comm     comm;
1097cc71bff1SMichael Lange   PetscSF      coneSF;
1098cc71bff1SMichael Lange   PetscSection originalConeSection, newConeSection;
1099ac04eaf7SToby Isaac   PetscInt    *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
1100cc71bff1SMichael Lange   PetscBool    flg;
1101cc71bff1SMichael Lange 
1102cc71bff1SMichael Lange   PetscFunctionBegin;
1103cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11040c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
11059566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones, dm, 0, 0, 0));
1106cc71bff1SMichael Lange   /* Distribute cone section */
11079566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
11089566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dm, &originalConeSection));
11099566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection));
11109566063dSJacob Faibussowitsch   PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection));
11119566063dSJacob Faibussowitsch   PetscCall(DMSetUp(dmParallel));
1112cc71bff1SMichael Lange   /* Communicate and renumber cones */
11139566063dSJacob Faibussowitsch   PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF));
11149566063dSJacob Faibussowitsch   PetscCall(PetscFree(remoteOffsets));
11159566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dm, &cones));
1116ac04eaf7SToby Isaac   if (original) {
1117ac04eaf7SToby Isaac     PetscInt numCones;
1118ac04eaf7SToby Isaac 
11199566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(originalConeSection, &numCones));
11209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numCones, &globCones));
11219566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones));
1122367003a6SStefano Zampini   } else {
1123ac04eaf7SToby Isaac     globCones = cones;
1124ac04eaf7SToby Isaac   }
11259566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCones(dmParallel, &newCones));
11269566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE));
11279566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE));
11281baa6e33SBarry Smith   if (original) PetscCall(PetscFree(globCones));
11299566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize));
11309566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones));
113176bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
11323533c52bSMatthew G. Knepley     PetscInt  p;
11333533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
11343533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
11359371c9d4SSatish Balay       if (newCones[p] < 0) {
11369371c9d4SSatish Balay         valid = PETSC_FALSE;
11379371c9d4SSatish Balay         PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank, p));
11389371c9d4SSatish Balay       }
11393533c52bSMatthew G. Knepley     }
114028b400f6SJacob Faibussowitsch     PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
11413533c52bSMatthew G. Knepley   }
11429566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-cones_view", &flg));
1143cc71bff1SMichael Lange   if (flg) {
11449566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Serial Cone Section:\n"));
11459566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm)));
11469566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n"));
11479566063dSJacob Faibussowitsch     PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm)));
11489566063dSJacob Faibussowitsch     PetscCall(PetscSFView(coneSF, NULL));
1149cc71bff1SMichael Lange   }
11509566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dm, &cones));
11519566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones));
11529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE));
11539566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE));
11549566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&coneSF));
11559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones, dm, 0, 0, 0));
1156eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
1157cc71bff1SMichael Lange   {
1158cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1159cc71bff1SMichael Lange 
11609566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd));
11619566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd));
1162cc71bff1SMichael Lange   }
11639566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(dmParallel));
11649566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(dmParallel));
11651cf84007SMatthew G. Knepley   {
11661cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
11671cf84007SMatthew G. Knepley 
11689566063dSJacob Faibussowitsch     PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
11699566063dSJacob Faibussowitsch     PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure));
11709566063dSJacob Faibussowitsch     PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors));
11719566063dSJacob Faibussowitsch     PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors));
11721cf84007SMatthew G. Knepley   }
11733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1174cc71bff1SMichael Lange }
1175cc71bff1SMichael Lange 
1176d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
1177d71ae5a4SJacob Faibussowitsch {
11780df0e737SMichael Lange   MPI_Comm         comm;
11799318fe57SMatthew G. Knepley   DM               cdm, cdmParallel;
11800df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
11810df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
11820df0e737SMichael Lange   PetscInt         bs;
11830df0e737SMichael Lange   const char      *name;
11844fb89dddSMatthew G. Knepley   const PetscReal *maxCell, *Lstart, *L;
11850df0e737SMichael Lange 
11860df0e737SMichael Lange   PetscFunctionBegin;
11870df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11880c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
11890df0e737SMichael Lange 
11909566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
11916858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(dm, &cdm));
11926858538eSMatthew G. Knepley   PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel));
11936858538eSMatthew G. Knepley   PetscCall(DMCopyDisc(cdm, cdmParallel));
11949566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dm, &originalCoordSection));
11959566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection));
11969566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates));
11970df0e737SMichael Lange   if (originalCoordinates) {
11989566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
11999566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name));
12009566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name));
12010df0e737SMichael Lange 
12029566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates));
12039566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates));
12049566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(originalCoordinates, &bs));
12059566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(newCoordinates, bs));
12069566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&newCoordinates));
12070df0e737SMichael Lange   }
12086858538eSMatthew G. Knepley 
12096858538eSMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12104fb89dddSMatthew G. Knepley   PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
12114fb89dddSMatthew G. Knepley   PetscCall(DMSetPeriodicity(dmParallel, maxCell, Lstart, L));
12126858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinateDM(dm, &cdm));
12136858538eSMatthew G. Knepley   if (cdm) {
12146858538eSMatthew G. Knepley     PetscCall(DMClone(dmParallel, &cdmParallel));
12156858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinateDM(dmParallel, cdmParallel));
12169566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(cdm, cdmParallel));
12176858538eSMatthew G. Knepley     PetscCall(DMDestroy(&cdmParallel));
12186858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinateSection(dm, &originalCoordSection));
12196858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinatesLocal(dm, &originalCoordinates));
12206858538eSMatthew G. Knepley     PetscCall(PetscSectionCreate(comm, &newCoordSection));
12216858538eSMatthew G. Knepley     if (originalCoordinates) {
12226858538eSMatthew G. Knepley       PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
12236858538eSMatthew G. Knepley       PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name));
12246858538eSMatthew G. Knepley       PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name));
12256858538eSMatthew G. Knepley 
12266858538eSMatthew G. Knepley       PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates));
12276858538eSMatthew G. Knepley       PetscCall(VecGetBlockSize(originalCoordinates, &bs));
12286858538eSMatthew G. Knepley       PetscCall(VecSetBlockSize(newCoordinates, bs));
12296858538eSMatthew G. Knepley       PetscCall(DMSetCellCoordinateSection(dmParallel, bs, newCoordSection));
12306858538eSMatthew G. Knepley       PetscCall(DMSetCellCoordinatesLocal(dmParallel, newCoordinates));
12316858538eSMatthew G. Knepley       PetscCall(VecDestroy(&newCoordinates));
12326858538eSMatthew G. Knepley     }
12336858538eSMatthew G. Knepley     PetscCall(PetscSectionDestroy(&newCoordSection));
12346858538eSMatthew G. Knepley   }
12353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12360df0e737SMichael Lange }
12370df0e737SMichael Lange 
1238d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
1239d71ae5a4SJacob Faibussowitsch {
1240df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex *)dm->data;
12410df0e737SMichael Lange   MPI_Comm         comm;
12427980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
12430df0e737SMichael Lange   PetscMPIInt      rank;
12447980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1245df0420ecSMatthew G. Knepley   PetscBool        hasLabels  = PETSC_FALSE, lsendDepth, sendDepth;
1246df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
12470df0e737SMichael Lange 
12480df0e737SMichael Lange   PetscFunctionBegin;
12490df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12500c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12510c86c063SLisandro Dalcin 
12529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels, dm, 0, 0, 0));
12539566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
12549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
12550df0e737SMichael Lange 
1256df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
12579566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
12589566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
12599566063dSJacob Faibussowitsch   if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject)depthLabel, &depthState));
1260df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
12611c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm));
1262df0420ecSMatthew G. Knepley   if (sendDepth) {
12639566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel));
12649566063dSJacob Faibussowitsch     PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE));
1265df0420ecSMatthew G. Knepley   }
1266d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
12679566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &numLocalLabels));
1268d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
12699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm));
1270627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
12715d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1272bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
127383e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput     = PETSC_TRUE, isOutput;
1274d67d17b1SMatthew G. Knepley     const char *name = NULL;
12750df0e737SMichael Lange 
1276d67d17b1SMatthew G. Knepley     if (hasLabels) {
12779566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
12780df0e737SMichael Lange       /* Skip "depth" because it is recreated */
12799566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)label, &name));
12809566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &isDepth));
1281bbcf679cSJacob Faibussowitsch     } else {
1282bbcf679cSJacob Faibussowitsch       isDepth = PETSC_FALSE;
1283d67d17b1SMatthew G. Knepley     }
12849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm));
128583e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
12869566063dSJacob Faibussowitsch     PetscCall(DMLabelDistribute(label, migrationSF, &labelNew));
128783e10cb3SLisandro Dalcin     if (isDepth) {
12887980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
12897980c9d4SMatthew G. Knepley       PetscInt gdepth;
12907980c9d4SMatthew G. Knepley 
12911c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm));
129263a3b9bcSJacob Faibussowitsch       PetscCheck(!(depth >= 0) || !(gdepth != depth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth);
12937980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
12947980c9d4SMatthew G. Knepley         PetscBool has;
12957980c9d4SMatthew G. Knepley 
12969566063dSJacob Faibussowitsch         PetscCall(DMLabelHasStratum(labelNew, d, &has));
12979566063dSJacob Faibussowitsch         if (!has) PetscCall(DMLabelAddStratum(labelNew, d));
12987980c9d4SMatthew G. Knepley       }
12997980c9d4SMatthew G. Knepley     }
13009566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmParallel, labelNew));
130183e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
13029566063dSJacob Faibussowitsch     if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput));
13031c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm));
13049566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)labelNew, &name));
13059566063dSJacob Faibussowitsch     PetscCall(DMSetLabelOutput(dmParallel, name, isOutput));
13069566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&labelNew));
13070df0e737SMichael Lange   }
1308695799ffSMatthew G. Knepley   {
1309695799ffSMatthew G. Knepley     DMLabel ctLabel;
1310695799ffSMatthew G. Knepley 
1311695799ffSMatthew G. Knepley     // Reset label for fast lookup
1312695799ffSMatthew G. Knepley     PetscCall(DMPlexGetCellTypeLabel(dmParallel, &ctLabel));
1313695799ffSMatthew G. Knepley     PetscCall(DMLabelMakeAllInvalid_Internal(ctLabel));
1314695799ffSMatthew G. Knepley   }
13159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels, dm, 0, 0, 0));
13163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13170df0e737SMichael Lange }
13180df0e737SMichael Lange 
1319d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1320d71ae5a4SJacob Faibussowitsch {
132115078cd4SMichael Lange   DM_Plex     *mesh  = (DM_Plex *)dm->data;
132215078cd4SMichael Lange   DM_Plex     *pmesh = (DM_Plex *)(dmParallel)->data;
1323a6f36705SMichael Lange   MPI_Comm     comm;
1324a6f36705SMichael Lange   DM           refTree;
1325a6f36705SMichael Lange   PetscSection origParentSection, newParentSection;
1326a6f36705SMichael Lange   PetscInt    *origParents, *origChildIDs;
1327a6f36705SMichael Lange   PetscBool    flg;
1328a6f36705SMichael Lange 
1329a6f36705SMichael Lange   PetscFunctionBegin;
1330a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13310c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
13329566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1333a6f36705SMichael Lange 
1334a6f36705SMichael Lange   /* Set up tree */
13359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetReferenceTree(dm, &refTree));
13369566063dSJacob Faibussowitsch   PetscCall(DMPlexSetReferenceTree(dmParallel, refTree));
13379566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTree(dm, &origParentSection, &origParents, &origChildIDs, NULL, NULL));
1338a6f36705SMichael Lange   if (origParentSection) {
1339a6f36705SMichael Lange     PetscInt  pStart, pEnd;
134008633170SToby Isaac     PetscInt *newParents, *newChildIDs, *globParents;
1341a6f36705SMichael Lange     PetscInt *remoteOffsetsParents, newParentSize;
1342a6f36705SMichael Lange     PetscSF   parentSF;
1343a6f36705SMichael Lange 
13449566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd));
13459566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel), &newParentSection));
13469566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(newParentSection, pStart, pEnd));
13479566063dSJacob Faibussowitsch     PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection));
13489566063dSJacob Faibussowitsch     PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF));
13499566063dSJacob Faibussowitsch     PetscCall(PetscFree(remoteOffsetsParents));
13509566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(newParentSection, &newParentSize));
13519566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(newParentSize, &newParents, newParentSize, &newChildIDs));
135208633170SToby Isaac     if (original) {
135308633170SToby Isaac       PetscInt numParents;
135408633170SToby Isaac 
13559566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(origParentSection, &numParents));
13569566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numParents, &globParents));
13579566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents));
13589371c9d4SSatish Balay     } else {
135908633170SToby Isaac       globParents = origParents;
136008633170SToby Isaac     }
13619566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE));
13629566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE));
13631baa6e33SBarry Smith     if (original) PetscCall(PetscFree(globParents));
13649566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE));
13659566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE));
13669566063dSJacob Faibussowitsch     PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents));
136776bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
13684a54e071SToby Isaac       PetscInt  p;
13694a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
13704a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
13719371c9d4SSatish Balay         if (newParents[p] < 0) {
13729371c9d4SSatish Balay           valid = PETSC_FALSE;
13739371c9d4SSatish Balay           PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p));
13749371c9d4SSatish Balay         }
13754a54e071SToby Isaac       }
137628b400f6SJacob Faibussowitsch       PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
13774a54e071SToby Isaac     }
13789566063dSJacob Faibussowitsch     PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-parents_view", &flg));
1379a6f36705SMichael Lange     if (flg) {
13809566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Serial Parent Section: \n"));
13819566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm)));
13829566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n"));
13839566063dSJacob Faibussowitsch       PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm)));
13849566063dSJacob Faibussowitsch       PetscCall(PetscSFView(parentSF, NULL));
1385a6f36705SMichael Lange     }
13869566063dSJacob Faibussowitsch     PetscCall(DMPlexSetTree(dmParallel, newParentSection, newParents, newChildIDs));
13879566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newParentSection));
13889566063dSJacob Faibussowitsch     PetscCall(PetscFree2(newParents, newChildIDs));
13899566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&parentSF));
1390a6f36705SMichael Lange   }
139115078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
13923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1393a6f36705SMichael Lange }
13940df0e737SMichael Lange 
139598ba2d7fSLawrence Mitchell /*@
139698ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
139798ba2d7fSLawrence Mitchell 
139898ba2d7fSLawrence Mitchell   Input Parameters:
139998ba2d7fSLawrence Mitchell + dm - The DMPlex object
140098ba2d7fSLawrence Mitchell - flg - Balance the partition?
140198ba2d7fSLawrence Mitchell 
140298ba2d7fSLawrence Mitchell   Level: intermediate
140398ba2d7fSLawrence Mitchell 
1404db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()`
140598ba2d7fSLawrence Mitchell @*/
1406d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
1407d71ae5a4SJacob Faibussowitsch {
140898ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
140998ba2d7fSLawrence Mitchell 
141098ba2d7fSLawrence Mitchell   PetscFunctionBegin;
141198ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
14123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
141398ba2d7fSLawrence Mitchell }
141498ba2d7fSLawrence Mitchell 
141598ba2d7fSLawrence Mitchell /*@
141698ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
141798ba2d7fSLawrence Mitchell 
141898ba2d7fSLawrence Mitchell   Input Parameter:
1419a2b725a8SWilliam Gropp . dm - The DMPlex object
142098ba2d7fSLawrence Mitchell 
142198ba2d7fSLawrence Mitchell   Output Parameter:
1422a2b725a8SWilliam Gropp . flg - Balance the partition?
142398ba2d7fSLawrence Mitchell 
142498ba2d7fSLawrence Mitchell   Level: intermediate
142598ba2d7fSLawrence Mitchell 
1426db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()`
142798ba2d7fSLawrence Mitchell @*/
1428d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
1429d71ae5a4SJacob Faibussowitsch {
143098ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
143198ba2d7fSLawrence Mitchell 
143298ba2d7fSLawrence Mitchell   PetscFunctionBegin;
143398ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1434534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
143598ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
14363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
143798ba2d7fSLawrence Mitchell }
143898ba2d7fSLawrence Mitchell 
1439fc02256fSLawrence Mitchell typedef struct {
1440fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1441fc02256fSLawrence Mitchell } Petsc3Int;
1442fc02256fSLawrence Mitchell 
1443fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
1444d71ae5a4SJacob Faibussowitsch static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype)
1445d71ae5a4SJacob Faibussowitsch {
1446fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1447fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1448fc02256fSLawrence Mitchell   PetscInt   i, len = *len_;
1449fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1450fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1451fc02256fSLawrence Mitchell       a[i].vote  = b[i].vote;
1452fc02256fSLawrence Mitchell       a[i].rank  = b[i].rank;
1453fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1454fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1455fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1456fc02256fSLawrence Mitchell         a[i].rank  = b[i].rank;
1457fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1458fc02256fSLawrence Mitchell       }
1459fc02256fSLawrence Mitchell     }
1460fc02256fSLawrence Mitchell   }
1461fc02256fSLawrence Mitchell }
1462fc02256fSLawrence Mitchell 
1463f5bf2dbfSMichael Lange /*@C
1464a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1465f5bf2dbfSMichael Lange 
1466064ec1f3Sprj-   Input Parameters:
1467f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1468f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
1469d8d19677SJose E. Roman - ownership   - Flag causing a vote to determine point ownership
1470f5bf2dbfSMichael Lange 
1471f5bf2dbfSMichael Lange   Output Parameter:
1472d8d19677SJose E. Roman . pointSF     - The star forest describing the point overlap in the remapped DM
1473f5bf2dbfSMichael Lange 
14743618482eSVaclav Hapla   Notes:
14753618482eSVaclav Hapla   Output pointSF is guaranteed to have the array of local indices (leaves) sorted.
14763618482eSVaclav Hapla 
1477f5bf2dbfSMichael Lange   Level: developer
1478f5bf2dbfSMichael Lange 
1479db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
1480f5bf2dbfSMichael Lange @*/
1481d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1482d71ae5a4SJacob Faibussowitsch {
148323193802SMatthew G. Knepley   PetscMPIInt        rank, size;
14841627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1485f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1486f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1487f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1488f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
148923193802SMatthew G. Knepley   Vec                shifts;
1490cae3e4f3SLawrence Mitchell   const PetscInt     numShifts  = 13759;
149123193802SMatthew G. Knepley   const PetscScalar *shift      = NULL;
149223193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
149398ba2d7fSLawrence Mitchell   PetscBool          balance;
1494f5bf2dbfSMichael Lange 
1495f5bf2dbfSMichael Lange   PetscFunctionBegin;
1496f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
14989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
14999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF, dm, 0, 0, 0));
1500f5bf2dbfSMichael Lange 
15019566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
15029566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots));
15039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes));
1504f5bf2dbfSMichael Lange   if (ownership) {
1505fc02256fSLawrence Mitchell     MPI_Op       op;
1506fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1507fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
150823193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
150998ba2d7fSLawrence Mitchell     if (balance) {
151023193802SMatthew G. Knepley       PetscRandom r;
151123193802SMatthew G. Knepley 
15129566063dSJacob Faibussowitsch       PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r));
15139566063dSJacob Faibussowitsch       PetscCall(PetscRandomSetInterval(r, 0, 2467 * size));
15149566063dSJacob Faibussowitsch       PetscCall(VecCreate(PETSC_COMM_SELF, &shifts));
15159566063dSJacob Faibussowitsch       PetscCall(VecSetSizes(shifts, numShifts, numShifts));
15169566063dSJacob Faibussowitsch       PetscCall(VecSetType(shifts, VECSTANDARD));
15179566063dSJacob Faibussowitsch       PetscCall(VecSetRandom(shifts, r));
15189566063dSJacob Faibussowitsch       PetscCall(PetscRandomDestroy(&r));
15199566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(shifts, &shift));
152023193802SMatthew G. Knepley     }
152123193802SMatthew G. Knepley 
15229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nroots, &rootVote));
15239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &leafVote));
152423193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1525f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
152623193802SMatthew G. Knepley       if (shiftDebug) {
15279371c9d4SSatish Balay         PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject)dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index,
15289371c9d4SSatish Balay                                           (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]), (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size));
152923193802SMatthew G. Knepley       }
1530f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1531fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size;
1532fc02256fSLawrence Mitchell       leafVote[p].rank  = rank;
1533fc02256fSLawrence Mitchell       leafVote[p].index = p;
1534f5bf2dbfSMichael Lange     }
1535f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
15361627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1537fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1538fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1539fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1540f5bf2dbfSMichael Lange     }
15419566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype));
15429566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&datatype));
15439566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op));
15449566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op));
15459566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op));
15469566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Op_free(&op));
15479566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&datatype));
1548c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1549fc02256fSLawrence Mitchell       rootNodes[p].rank  = rootVote[p].rank;
1550fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1551c091126eSLawrence Mitchell     }
15529566063dSJacob Faibussowitsch     PetscCall(PetscFree(leafVote));
15539566063dSJacob Faibussowitsch     PetscCall(PetscFree(rootVote));
1554f5bf2dbfSMichael Lange   } else {
1555f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1556f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1557f5bf2dbfSMichael Lange       rootNodes[p].rank  = rank;
1558fc02256fSLawrence Mitchell     }
1559f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1560f5bf2dbfSMichael Lange       /* Write new local id into old location */
1561ad540459SPierre Jolivet       if (roots[p].rank == rank) rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1562f5bf2dbfSMichael Lange     }
1563f5bf2dbfSMichael Lange   }
15649566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE));
15659566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE));
1566f5bf2dbfSMichael Lange 
156723193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1568b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
156923193802SMatthew G. Knepley   }
15709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointLocal));
15719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(npointLeaves, &pointRemote));
1572f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1573b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
15743618482eSVaclav Hapla       /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */
1575f5bf2dbfSMichael Lange       pointLocal[idx]  = p;
1576f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1577f5bf2dbfSMichael Lange       idx++;
1578f5bf2dbfSMichael Lange     }
1579f5bf2dbfSMichael Lange   }
158023193802SMatthew G. Knepley   if (shift) {
15819566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(shifts, &shift));
15829566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&shifts));
158323193802SMatthew G. Knepley   }
15849566063dSJacob Faibussowitsch   if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject)dm), PETSC_STDOUT));
15859566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), pointSF));
15869566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*pointSF));
15879566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER));
15889566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rootNodes, leafNodes));
15899566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF, dm, 0, 0, 0));
1590d7d32a9aSMatthew G. Knepley   if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF, PETSC_FALSE));
15913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1592f5bf2dbfSMichael Lange }
1593f5bf2dbfSMichael Lange 
159415078cd4SMichael Lange /*@C
159515078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
159615078cd4SMichael Lange 
1597d083f849SBarry Smith   Collective on dm
159883655b49SVáclav Hapla 
1599064ec1f3Sprj-   Input Parameters:
160015078cd4SMichael Lange + dm       - The source DMPlex object
1601d8d19677SJose E. Roman - sf       - The star forest communication context describing the migration pattern
160215078cd4SMichael Lange 
160315078cd4SMichael Lange   Output Parameter:
1604d8d19677SJose E. Roman . targetDM - The target DMPlex object
160515078cd4SMichael Lange 
1606b9f40539SMichael Lange   Level: intermediate
160715078cd4SMichael Lange 
1608db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()`
160915078cd4SMichael Lange @*/
1610d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
1611d71ae5a4SJacob Faibussowitsch {
1612b9f40539SMichael Lange   MPI_Comm               comm;
1613cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1614b9f40539SMichael Lange   PetscSF                sfPoint;
161515078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1616ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
161715078cd4SMichael Lange 
161815078cd4SMichael Lange   PetscFunctionBegin;
161915078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0));
16219566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
16229566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16239566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(targetDM, dim));
16249566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
16259566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(targetDM, cdim));
162615078cd4SMichael Lange 
1627bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
16289566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
16299566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL));
1630bfb0467fSMichael Lange   if (nroots >= 0) {
1631b9f40539SMichael Lange     IS        isOriginal;
1632ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1633ac04eaf7SToby Isaac     PetscInt *numbering_orig, *numbering_new;
1634367003a6SStefano Zampini 
1635b9f40539SMichael Lange     /* Get the original point numbering */
16369566063dSJacob Faibussowitsch     PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal));
16379566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal));
16389566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size));
16399566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt **)&numbering_orig));
1640b9f40539SMichael Lange     /* Convert to positive global numbers */
16419371c9d4SSatish Balay     for (n = 0; n < size; n++) {
16429371c9d4SSatish Balay       if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n] + 1);
16439371c9d4SSatish Balay     }
1644b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
16459566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL));
16469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &numbering_new));
16479566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE));
16489566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE));
16499566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration));
16509566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt **)&numbering_orig));
16519566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isOriginal));
165215078cd4SMichael Lange   } else {
1653bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
16549566063dSJacob Faibussowitsch     PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration));
165515078cd4SMichael Lange   }
1656a5a902f7SVaclav Hapla   PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration"));
1657a5a902f7SVaclav Hapla   PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view"));
165815078cd4SMichael Lange   /* Migrate DM data to target DM */
16599566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM));
16609566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeLabels(dm, sf, targetDM));
16619566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM));
16629566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM));
16639566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogOriginal));
16649566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&ltogMigration));
16659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0));
16663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
166715078cd4SMichael Lange }
166815078cd4SMichael Lange 
16693b8f15a2SMatthew G. Knepley /*@C
167070034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
167170034214SMatthew G. Knepley 
1672d083f849SBarry Smith   Collective on dm
167370034214SMatthew G. Knepley 
1674064ec1f3Sprj-   Input Parameters:
167570034214SMatthew G. Knepley + dm  - The original DMPlex object
167670034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
167770034214SMatthew G. Knepley 
1678064ec1f3Sprj-   Output Parameters:
1679f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1680f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
168170034214SMatthew G. Knepley 
1682f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
168370034214SMatthew G. Knepley 
1684b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
168570034214SMatthew G. Knepley   representation on the mesh.
168670034214SMatthew G. Knepley 
168770034214SMatthew G. Knepley   Level: intermediate
168870034214SMatthew G. Knepley 
1689db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()`
169070034214SMatthew G. Knepley @*/
1691d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
1692d71ae5a4SJacob Faibussowitsch {
169370034214SMatthew G. Knepley   MPI_Comm         comm;
169415078cd4SMichael Lange   PetscPartitioner partitioner;
1695f8987ae8SMichael Lange   IS               cellPart;
1696f8987ae8SMichael Lange   PetscSection     cellPartSection;
1697cf86098cSMatthew G. Knepley   DM               dmCoord;
1698f8987ae8SMichael Lange   DMLabel          lblPartition, lblMigration;
1699874ddda9SLisandro Dalcin   PetscSF          sfMigration, sfStratified, sfPoint;
170098ba2d7fSLawrence Mitchell   PetscBool        flg, balance;
1701874ddda9SLisandro Dalcin   PetscMPIInt      rank, size;
170270034214SMatthew G. Knepley 
170370034214SMatthew G. Knepley   PetscFunctionBegin;
170470034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1705d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1706d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf, 3);
1707d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel, 4);
170870034214SMatthew G. Knepley 
17090c86c063SLisandro Dalcin   if (sf) *sf = NULL;
17100c86c063SLisandro Dalcin   *dmParallel = NULL;
17119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
17129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
17139566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17143ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
171570034214SMatthew G. Knepley 
17169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Distribute, dm, 0, 0, 0));
171715078cd4SMichael Lange   /* Create cell partition */
17189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0));
17199566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &cellPartSection));
17209566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm, &partitioner));
17219566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart));
17229566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_PartSelf, dm, 0, 0, 0));
1723f8987ae8SMichael Lange   {
1724f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1725825f8a23SLisandro Dalcin     IS              is;
1726825f8a23SLisandro Dalcin     PetscHSetI      ht;
1727f8987ae8SMichael Lange     const PetscInt *points;
17288e330a33SStefano Zampini     PetscInt       *iranks;
17298e330a33SStefano Zampini     PetscInt        pStart, pEnd, proc, npoints, poff = 0, nranks;
1730825f8a23SLisandro Dalcin 
17319566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition));
1732825f8a23SLisandro Dalcin     /* Preallocate strata */
17339566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
17349566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1735825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
17369566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
17379566063dSJacob Faibussowitsch       if (npoints) PetscCall(PetscHSetIAdd(ht, proc));
1738825f8a23SLisandro Dalcin     }
17399566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(ht, &nranks));
17409566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nranks, &iranks));
17419566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetElems(ht, &poff, iranks));
17429566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
17439566063dSJacob Faibussowitsch     PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks));
17449566063dSJacob Faibussowitsch     PetscCall(PetscFree(iranks));
1745825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
17469566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(cellPart, &points));
17479566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd));
1748f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
17499566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints));
1750825f8a23SLisandro Dalcin       if (!npoints) continue;
17519566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff));
17529566063dSJacob Faibussowitsch       PetscCall(DMPlexClosurePoints_Private(dm, npoints, points + poff, &is));
17539566063dSJacob Faibussowitsch       PetscCall(DMLabelSetStratumIS(lblPartition, proc, is));
17549566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&is));
1755f8987ae8SMichael Lange     }
17569566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(cellPart, &points));
1757f8987ae8SMichael Lange   }
17589566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_PartSelf, dm, 0, 0, 0));
17596e203dd9SStefano Zampini 
17609566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration));
17619566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration));
17629566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration));
17639566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified));
17649566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfMigration));
176543f7d02bSMichael Lange   sfMigration = sfStratified;
17669566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sfMigration));
17679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0));
17689566063dSJacob Faibussowitsch   PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-partition_view", &flg));
176970034214SMatthew G. Knepley   if (flg) {
17709566063dSJacob Faibussowitsch     PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm)));
17719566063dSJacob Faibussowitsch     PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm)));
177270034214SMatthew G. Knepley   }
1773f8987ae8SMichael Lange 
177415078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
17759566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmParallel));
17769566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*dmParallel, "Parallel Mesh"));
17779566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel));
177870034214SMatthew G. Knepley 
1779a157612eSMichael Lange   /* Build the point SF without overlap */
17809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitionBalance(dm, &balance));
17819566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance));
17829566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint));
17839566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmParallel, sfPoint));
17845f06a3ddSJed Brown   PetscCall(DMPlexMigrateIsoperiodicFaceSF_Internal(dm, *dmParallel, sfMigration));
17859566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord));
17869566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
17879566063dSJacob Faibussowitsch   if (flg) PetscCall(PetscSFView(sfPoint, NULL));
178870034214SMatthew G. Knepley 
1789a157612eSMichael Lange   if (overlap > 0) {
179015078cd4SMichael Lange     DM                 dmOverlap;
179157f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
179257f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
179357f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
179415078cd4SMichael Lange     const PetscSFNode *oldRemote;
179515078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1796524e35f8SStefano Zampini 
1797a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
17989566063dSJacob Faibussowitsch     PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap));
17999566063dSJacob Faibussowitsch     PetscCall(DMDestroy(dmParallel));
1800a157612eSMichael Lange     *dmParallel = dmOverlap;
1801c389ea9fSToby Isaac     if (flg) {
18029566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n"));
18039566063dSJacob Faibussowitsch       PetscCall(PetscSFView(sfOverlap, NULL));
1804c389ea9fSToby Isaac     }
180543331d4aSMichael Lange 
1806f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
18079566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote));
18089566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL));
18099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &newRemote));
181057f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
181157f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
181257f290daSMatthew G. Knepley     if (oldLeaves) {
181373e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
18149566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(noldleaves, &permRemote));
181557f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
181657f290daSMatthew G. Knepley       oldRemote = permRemote;
181757f290daSMatthew G. Knepley     }
18189566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE));
18199566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE));
18209566063dSJacob Faibussowitsch     if (oldLeaves) PetscCall(PetscFree(oldRemote));
18219566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, &sfOverlapPoint));
18229566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER));
18239566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfOverlap));
18249566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sfMigration));
182515078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1826c389ea9fSToby Isaac   }
1827bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
18289566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblPartition));
18299566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblMigration));
18309566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&cellPartSection));
18319566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellPart));
183245480ffeSMatthew G. Knepley   /* Copy discretization */
18339566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *dmParallel));
183466fe0bfeSMatthew G. Knepley   /* Create sfNatural */
183566fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
183666fe0bfeSMatthew G. Knepley     PetscSection section;
183766fe0bfeSMatthew G. Knepley 
1838fc6a3818SBlaise Bourdin     PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE));
1839fc6a3818SBlaise Bourdin     PetscCall(DMGetLocalSection(dm, &section));
1840fc6a3818SBlaise Bourdin 
18418aee0f92SAlexis Marboeuf     /* First DM with useNatural = PETSC_TRUE is considered natural */
18428aee0f92SAlexis Marboeuf     /* sfMigration and sfNatural are respectively the point and dofs SFs mapping to this natural DM */
1843fc6a3818SBlaise Bourdin     /* Compose with a previous sfNatural if present */
1844fc6a3818SBlaise Bourdin     if (dm->sfNatural) {
1845fc6a3818SBlaise Bourdin       PetscSF natSF;
1846fc6a3818SBlaise Bourdin 
1847fc6a3818SBlaise Bourdin       PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &natSF));
1848fc6a3818SBlaise Bourdin       PetscCall(PetscSFCompose(dm->sfNatural, natSF, &(*dmParallel)->sfNatural));
1849fc6a3818SBlaise Bourdin       PetscCall(PetscSFDestroy(&natSF));
1850fc6a3818SBlaise Bourdin     } else {
1851fc6a3818SBlaise Bourdin       PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural));
1852fc6a3818SBlaise Bourdin     }
18538aee0f92SAlexis Marboeuf     /* Compose with a previous sfMigration if present */
18548aee0f92SAlexis Marboeuf     if (dm->sfMigration) {
18558aee0f92SAlexis Marboeuf       PetscSF naturalPointSF;
18568aee0f92SAlexis Marboeuf 
18578aee0f92SAlexis Marboeuf       PetscCall(PetscSFCompose(dm->sfMigration, sfMigration, &naturalPointSF));
18588aee0f92SAlexis Marboeuf       PetscCall(PetscSFDestroy(&sfMigration));
18598aee0f92SAlexis Marboeuf       sfMigration = naturalPointSF;
18608aee0f92SAlexis Marboeuf     }
186166fe0bfeSMatthew G. Knepley   }
18625de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel));
1863721cbd76SMatthew G. Knepley   /* Cleanup */
18649371c9d4SSatish Balay   if (sf) {
18659371c9d4SSatish Balay     *sf = sfMigration;
18669371c9d4SSatish Balay   } else PetscCall(PetscSFDestroy(&sfMigration));
18679566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
18689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Distribute, dm, 0, 0, 0));
18693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
187070034214SMatthew G. Knepley }
1871a157612eSMichael Lange 
1872a157612eSMichael Lange /*@C
187324cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1874a157612eSMichael Lange 
1875d083f849SBarry Smith   Collective on dm
1876a157612eSMichael Lange 
1877064ec1f3Sprj-   Input Parameters:
1878064ec1f3Sprj- + dm  - The non-overlapping distributed DMPlex object
187957fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1880a157612eSMichael Lange 
1881064ec1f3Sprj-   Output Parameters:
1882a157612eSMichael Lange + sf - The PetscSF used for point distribution
1883a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1884a157612eSMichael Lange 
1885dccdeccaSVaclav Hapla   Notes:
1886dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1887a157612eSMichael Lange 
1888b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1889a157612eSMichael Lange   representation on the mesh.
1890a157612eSMichael Lange 
1891c506a872SMatthew G. Knepley   Options Database Keys:
1892c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names
1893c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...>   - List of overlap label values
1894c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name>     - Label used to exclude points from overlap
1895c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int>      - Label value used to exclude points from overlap
1896c506a872SMatthew G. Knepley 
1897dccdeccaSVaclav Hapla   Level: advanced
1898a157612eSMichael Lange 
1899db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()`
1900a157612eSMichael Lange @*/
1901d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1902d71ae5a4SJacob Faibussowitsch {
1903c506a872SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
1904a157612eSMichael Lange   MPI_Comm     comm;
19053567eaeeSMatthew G. Knepley   PetscMPIInt  size, rank;
1906a157612eSMichael Lange   PetscSection rootSection, leafSection;
1907a157612eSMichael Lange   IS           rootrank, leafrank;
1908cf86098cSMatthew G. Knepley   DM           dmCoord;
1909a9f1d5b2SMichael Lange   DMLabel      lblOverlap;
1910f5bf2dbfSMichael Lange   PetscSF      sfOverlap, sfStratified, sfPoint;
1911a157612eSMichael Lange 
1912a157612eSMichael Lange   PetscFunctionBegin;
1913a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
191457fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1915a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1916a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1917a157612eSMichael Lange 
19180c86c063SLisandro Dalcin   if (sf) *sf = NULL;
19190c86c063SLisandro Dalcin   *dmOverlap = NULL;
19209566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
19219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
19229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19233ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
1924c506a872SMatthew G. Knepley   {
1925c506a872SMatthew G. Knepley     // We need to get options for the _already_distributed mesh, so it must be done here
1926c506a872SMatthew G. Knepley     PetscInt    overlap;
1927c506a872SMatthew G. Knepley     const char *prefix;
1928c506a872SMatthew G. Knepley     char        oldPrefix[PETSC_MAX_PATH_LEN];
1929a157612eSMichael Lange 
1930c506a872SMatthew G. Knepley     oldPrefix[0] = '\0';
1931c506a872SMatthew G. Knepley     PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix));
1932*c6a7a370SJeremy L Thompson     PetscCall(PetscStrncpy(oldPrefix, prefix, sizeof(oldPrefix)));
1933c506a872SMatthew G. Knepley     PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, "dist_"));
1934c506a872SMatthew G. Knepley     PetscCall(DMPlexGetOverlap(dm, &overlap));
1935c506a872SMatthew G. Knepley     PetscObjectOptionsBegin((PetscObject)dm);
1936dbbe0bcdSBarry Smith     PetscCall(DMSetFromOptions_Overlap_Plex(dm, PetscOptionsObject, &overlap));
1937c506a872SMatthew G. Knepley     PetscOptionsEnd();
1938c506a872SMatthew G. Knepley     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, oldPrefix[0] == '\0' ? NULL : oldPrefix));
1939c506a872SMatthew G. Knepley   }
19409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
1941a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
19429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0));
19439566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &rootSection));
19449566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(comm, &leafSection));
19459566063dSJacob Faibussowitsch   PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank));
1946c506a872SMatthew G. Knepley   if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
1947c506a872SMatthew G. Knepley   else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap));
1948a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
19499566063dSJacob Faibussowitsch   PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap));
19509566063dSJacob Faibussowitsch   PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified));
19519566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfOverlap));
1952a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
19539566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)sfOverlap, "Overlap SF"));
19549566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sfOverlap));
1955a9f1d5b2SMichael Lange 
19569566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&rootSection));
19579566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&leafSection));
19589566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&rootrank));
19599566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&leafrank));
19609566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0));
1961a157612eSMichael Lange 
1962a157612eSMichael Lange   /* Build the overlapping DM */
19639566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, dmOverlap));
19649566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*dmOverlap, "Parallel Mesh"));
19659566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap));
1966cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
196760667520SVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap));
1968f5bf2dbfSMichael Lange   /* Build the new point SF */
19699566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint));
19709566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*dmOverlap, sfPoint));
19719566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord));
19729566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
19736858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinateDM(*dmOverlap, &dmCoord));
19746858538eSMatthew G. Knepley   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
19759566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
1976a157612eSMichael Lange   /* Cleanup overlap partition */
19779566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&lblOverlap));
1978a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
19799566063dSJacob Faibussowitsch   else PetscCall(PetscSFDestroy(&sfOverlap));
19809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0));
19813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1982a157612eSMichael Lange }
19836462276dSToby Isaac 
1984d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap)
1985d71ae5a4SJacob Faibussowitsch {
1986cb54e036SVaclav Hapla   DM_Plex *mesh = (DM_Plex *)dm->data;
1987cb54e036SVaclav Hapla 
1988cb54e036SVaclav Hapla   PetscFunctionBegin;
1989cb54e036SVaclav Hapla   *overlap = mesh->overlap;
19903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1991cb54e036SVaclav Hapla }
1992cb54e036SVaclav Hapla 
1993d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap)
1994d71ae5a4SJacob Faibussowitsch {
199560667520SVaclav Hapla   DM_Plex *mesh    = NULL;
199660667520SVaclav Hapla   DM_Plex *meshSrc = NULL;
199760667520SVaclav Hapla 
199860667520SVaclav Hapla   PetscFunctionBegin;
199960667520SVaclav Hapla   PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX);
200060667520SVaclav Hapla   mesh          = (DM_Plex *)dm->data;
200160667520SVaclav Hapla   mesh->overlap = overlap;
200260667520SVaclav Hapla   if (dmSrc) {
200360667520SVaclav Hapla     PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX);
200460667520SVaclav Hapla     meshSrc = (DM_Plex *)dmSrc->data;
200560667520SVaclav Hapla     mesh->overlap += meshSrc->overlap;
200660667520SVaclav Hapla   }
20073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
200860667520SVaclav Hapla }
200960667520SVaclav Hapla 
2010cb54e036SVaclav Hapla /*@
2011c506a872SMatthew G. Knepley   DMPlexGetOverlap - Get the width of the cell overlap
2012cb54e036SVaclav Hapla 
2013cb54e036SVaclav Hapla   Not collective
2014cb54e036SVaclav Hapla 
2015cb54e036SVaclav Hapla   Input Parameter:
2016cb54e036SVaclav Hapla . dm   - The DM
2017cb54e036SVaclav Hapla 
2018064ec1f3Sprj-   Output Parameter:
2019c506a872SMatthew G. Knepley . overlap - the width of the cell overlap
2020cb54e036SVaclav Hapla 
2021cb54e036SVaclav Hapla   Level: intermediate
2022cb54e036SVaclav Hapla 
2023c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()`
2024cb54e036SVaclav Hapla @*/
2025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap)
2026d71ae5a4SJacob Faibussowitsch {
2027cb54e036SVaclav Hapla   PetscFunctionBegin;
2028cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2029c506a872SMatthew G. Knepley   PetscValidIntPointer(overlap, 2);
2030cac4c232SBarry Smith   PetscUseMethod(dm, "DMPlexGetOverlap_C", (DM, PetscInt *), (dm, overlap));
20313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2032cb54e036SVaclav Hapla }
2033cb54e036SVaclav Hapla 
2034c506a872SMatthew G. Knepley /*@
2035c506a872SMatthew G. Knepley   DMPlexSetOverlap - Set the width of the cell overlap
2036c506a872SMatthew G. Knepley 
2037c506a872SMatthew G. Knepley   Logically collective
2038c506a872SMatthew G. Knepley 
2039c506a872SMatthew G. Knepley   Input Parameters:
2040c506a872SMatthew G. Knepley + dm      - The DM
2041c506a872SMatthew G. Knepley . dmSrc   - The DM that produced this one, or NULL
2042c506a872SMatthew G. Knepley - overlap - the width of the cell overlap
2043c506a872SMatthew G. Knepley 
2044c506a872SMatthew G. Knepley   Note:
2045c506a872SMatthew G. Knepley   The overlap from dmSrc is added to dm
2046c506a872SMatthew G. Knepley 
2047c506a872SMatthew G. Knepley   Level: intermediate
2048c506a872SMatthew G. Knepley 
2049c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()`
2050c506a872SMatthew G. Knepley @*/
2051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap)
2052d71ae5a4SJacob Faibussowitsch {
2053c506a872SMatthew G. Knepley   PetscFunctionBegin;
2054c506a872SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2055c506a872SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 3);
2056c506a872SMatthew G. Knepley   PetscTryMethod(dm, "DMPlexSetOverlap_C", (DM, DM, PetscInt), (dm, dmSrc, overlap));
20573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2058c506a872SMatthew G. Knepley }
2059c506a872SMatthew G. Knepley 
2060d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist)
2061d71ae5a4SJacob Faibussowitsch {
2062e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
2063e600fa54SMatthew G. Knepley 
2064e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2065e600fa54SMatthew G. Knepley   mesh->distDefault = dist;
20663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2067e600fa54SMatthew G. Knepley }
2068e600fa54SMatthew G. Knepley 
2069e600fa54SMatthew G. Knepley /*@
2070e600fa54SMatthew G. Knepley   DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default
2071e600fa54SMatthew G. Knepley 
2072e600fa54SMatthew G. Knepley   Logically collective
2073e600fa54SMatthew G. Knepley 
2074e600fa54SMatthew G. Knepley   Input Parameters:
2075e600fa54SMatthew G. Knepley + dm   - The DM
2076e600fa54SMatthew G. Knepley - dist - Flag for distribution
2077e600fa54SMatthew G. Knepley 
2078e600fa54SMatthew G. Knepley   Level: intermediate
2079e600fa54SMatthew G. Knepley 
20809e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()`
2081e600fa54SMatthew G. Knepley @*/
2082d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist)
2083d71ae5a4SJacob Faibussowitsch {
2084e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2085e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2086e600fa54SMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, dist, 2);
2087cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexDistributeSetDefault_C", (DM, PetscBool), (dm, dist));
20883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2089e600fa54SMatthew G. Knepley }
2090e600fa54SMatthew G. Knepley 
2091d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist)
2092d71ae5a4SJacob Faibussowitsch {
2093e600fa54SMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
2094e600fa54SMatthew G. Knepley 
2095e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2096e600fa54SMatthew G. Knepley   *dist = mesh->distDefault;
20973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2098e600fa54SMatthew G. Knepley }
2099e600fa54SMatthew G. Knepley 
2100e600fa54SMatthew G. Knepley /*@
2101e600fa54SMatthew G. Knepley   DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default
2102e600fa54SMatthew G. Knepley 
2103e600fa54SMatthew G. Knepley   Not collective
2104e600fa54SMatthew G. Knepley 
2105e600fa54SMatthew G. Knepley   Input Parameter:
2106e600fa54SMatthew G. Knepley . dm   - The DM
2107e600fa54SMatthew G. Knepley 
2108e600fa54SMatthew G. Knepley   Output Parameter:
2109e600fa54SMatthew G. Knepley . dist - Flag for distribution
2110e600fa54SMatthew G. Knepley 
2111e600fa54SMatthew G. Knepley   Level: intermediate
2112e600fa54SMatthew G. Knepley 
21139e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()`
2114e600fa54SMatthew G. Knepley @*/
2115d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist)
2116d71ae5a4SJacob Faibussowitsch {
2117e600fa54SMatthew G. Knepley   PetscFunctionBegin;
2118e600fa54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2119e600fa54SMatthew G. Knepley   PetscValidBoolPointer(dist, 2);
2120cac4c232SBarry Smith   PetscUseMethod(dm, "DMPlexDistributeGetDefault_C", (DM, PetscBool *), (dm, dist));
21213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2122e600fa54SMatthew G. Knepley }
2123e600fa54SMatthew G. Knepley 
21246462276dSToby Isaac /*@C
21256462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
21266462276dSToby Isaac   root process of the original's communicator.
21276462276dSToby Isaac 
2128d083f849SBarry Smith   Collective on dm
212983655b49SVáclav Hapla 
2130064ec1f3Sprj-   Input Parameter:
21316462276dSToby Isaac . dm - the original DMPlex object
21326462276dSToby Isaac 
21336462276dSToby Isaac   Output Parameters:
2134a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2135a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
21366462276dSToby Isaac 
21376462276dSToby Isaac   Level: intermediate
21386462276dSToby Isaac 
2139db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()`
21406462276dSToby Isaac @*/
2141d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
2142d71ae5a4SJacob Faibussowitsch {
21436462276dSToby Isaac   MPI_Comm         comm;
21446462276dSToby Isaac   PetscMPIInt      size;
21456462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
21466462276dSToby Isaac 
21476462276dSToby Isaac   PetscFunctionBegin;
21486462276dSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2149064a246eSJacob Faibussowitsch   PetscValidPointer(gatherMesh, 3);
21500c86c063SLisandro Dalcin   *gatherMesh = NULL;
2151a13df41bSStefano Zampini   if (sf) *sf = NULL;
21526462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
21539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
21543ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
21559566063dSJacob Faibussowitsch   PetscCall(DMPlexGetPartitioner(dm, &oldPart));
21569566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)oldPart));
21579566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerCreate(comm, &gatherPart));
21589566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerSetType(gatherPart, PETSCPARTITIONERGATHER));
21599566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm, gatherPart));
21609566063dSJacob Faibussowitsch   PetscCall(DMPlexDistribute(dm, 0, sf, gatherMesh));
2161a13df41bSStefano Zampini 
21629566063dSJacob Faibussowitsch   PetscCall(DMPlexSetPartitioner(dm, oldPart));
21639566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&gatherPart));
21649566063dSJacob Faibussowitsch   PetscCall(PetscPartitionerDestroy(&oldPart));
21653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21666462276dSToby Isaac }
21676462276dSToby Isaac 
21686462276dSToby Isaac /*@C
21696462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
21706462276dSToby Isaac 
2171d083f849SBarry Smith   Collective on dm
217283655b49SVáclav Hapla 
2173064ec1f3Sprj-   Input Parameter:
21746462276dSToby Isaac . dm - the original DMPlex object
21756462276dSToby Isaac 
21766462276dSToby Isaac   Output Parameters:
2177a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
2178a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
21796462276dSToby Isaac 
21806462276dSToby Isaac   Level: intermediate
21816462276dSToby Isaac 
2182db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()`
21836462276dSToby Isaac @*/
2184d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
2185d71ae5a4SJacob Faibussowitsch {
21866462276dSToby Isaac   MPI_Comm     comm;
21876462276dSToby Isaac   PetscMPIInt  size, rank;
21886462276dSToby Isaac   PetscInt     pStart, pEnd, p;
21896462276dSToby Isaac   PetscInt     numPoints = -1;
2190a13df41bSStefano Zampini   PetscSF      migrationSF, sfPoint, gatherSF;
21916462276dSToby Isaac   DM           gatherDM, dmCoord;
21926462276dSToby Isaac   PetscSFNode *points;
21936462276dSToby Isaac 
21946462276dSToby Isaac   PetscFunctionBegin;
21956462276dSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2196064a246eSJacob Faibussowitsch   PetscValidPointer(redundantMesh, 3);
21970c86c063SLisandro Dalcin   *redundantMesh = NULL;
21986462276dSToby Isaac   comm           = PetscObjectComm((PetscObject)dm);
21999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
220068dbc166SMatthew G. Knepley   if (size == 1) {
22019566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
220268dbc166SMatthew G. Knepley     *redundantMesh = dm;
2203a13df41bSStefano Zampini     if (sf) *sf = NULL;
22043ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
220568dbc166SMatthew G. Knepley   }
22069566063dSJacob Faibussowitsch   PetscCall(DMPlexGetGatherDM(dm, &gatherSF, &gatherDM));
22073ba16761SJacob Faibussowitsch   if (!gatherDM) PetscFunctionReturn(PETSC_SUCCESS);
22089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
22099566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(gatherDM, &pStart, &pEnd));
22106462276dSToby Isaac   numPoints = pEnd - pStart;
22119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Bcast(&numPoints, 1, MPIU_INT, 0, comm));
22129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numPoints, &points));
22139566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &migrationSF));
22146462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
22156462276dSToby Isaac     points[p].index = p;
22166462276dSToby Isaac     points[p].rank  = 0;
22176462276dSToby Isaac   }
22189566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(migrationSF, pEnd - pStart, numPoints, NULL, PETSC_OWN_POINTER, points, PETSC_OWN_POINTER));
22199566063dSJacob Faibussowitsch   PetscCall(DMPlexCreate(comm, redundantMesh));
22209566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)*redundantMesh, "Redundant Mesh"));
22219566063dSJacob Faibussowitsch   PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh));
22222e28cf0cSVaclav Hapla   /* This is to express that all point are in overlap */
22232e28cf0cSVaclav Hapla   PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT));
22249566063dSJacob Faibussowitsch   PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint));
22259566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*redundantMesh, sfPoint));
22269566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord));
22279566063dSJacob Faibussowitsch   if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint));
22289566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sfPoint));
2229a13df41bSStefano Zampini   if (sf) {
2230a13df41bSStefano Zampini     PetscSF tsf;
2231a13df41bSStefano Zampini 
22329566063dSJacob Faibussowitsch     PetscCall(PetscSFCompose(gatherSF, migrationSF, &tsf));
22339566063dSJacob Faibussowitsch     PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf));
22349566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&tsf));
2235a13df41bSStefano Zampini   }
22369566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&migrationSF));
22379566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&gatherSF));
22389566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&gatherDM));
22399566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, *redundantMesh));
22405de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh));
22413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22426462276dSToby Isaac }
22435fa78c88SVaclav Hapla 
22445fa78c88SVaclav Hapla /*@
22455fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
22465fa78c88SVaclav Hapla 
22475fa78c88SVaclav Hapla   Collective
22485fa78c88SVaclav Hapla 
22495fa78c88SVaclav Hapla   Input Parameter:
22505fa78c88SVaclav Hapla . dm      - The DM object
22515fa78c88SVaclav Hapla 
22525fa78c88SVaclav Hapla   Output Parameter:
22535fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
22545fa78c88SVaclav Hapla 
22555fa78c88SVaclav Hapla   Level: intermediate
22565fa78c88SVaclav Hapla 
22575fa78c88SVaclav Hapla   Notes:
22585fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
22595fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
22605fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
22615fa78c88SVaclav Hapla 
2262db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()`
22635fa78c88SVaclav Hapla @*/
2264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed)
2265d71ae5a4SJacob Faibussowitsch {
22665fa78c88SVaclav Hapla   PetscInt    pStart, pEnd, count;
22675fa78c88SVaclav Hapla   MPI_Comm    comm;
226835d70e31SStefano Zampini   PetscMPIInt size;
22695fa78c88SVaclav Hapla 
22705fa78c88SVaclav Hapla   PetscFunctionBegin;
22715fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2272dadcf809SJacob Faibussowitsch   PetscValidBoolPointer(distributed, 2);
22739566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
22749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
22759371c9d4SSatish Balay   if (size == 1) {
22769371c9d4SSatish Balay     *distributed = PETSC_FALSE;
22773ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
22789371c9d4SSatish Balay   }
22799566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
228035d70e31SStefano Zampini   count = (pEnd - pStart) > 0 ? 1 : 0;
22819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm));
22825fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
22833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22845fa78c88SVaclav Hapla }
22851d1f2f2aSksagiyam 
22861d1f2f2aSksagiyam /*@C
22871d1f2f2aSksagiyam   DMPlexDistributionSetName - Set the name of the specific parallel distribution
22881d1f2f2aSksagiyam 
22891d1f2f2aSksagiyam   Input Parameters:
22901d1f2f2aSksagiyam + dm   - The DM
22911d1f2f2aSksagiyam - name - The name of the specific parallel distribution
22921d1f2f2aSksagiyam 
22931d1f2f2aSksagiyam   Note:
22941d1f2f2aSksagiyam   If distribution name is set when saving, DMPlexTopologyView() saves the plex's
22951d1f2f2aSksagiyam   parallel distribution (i.e., partition, ownership, and local ordering of points) under
22961d1f2f2aSksagiyam   this name. Conversely, if distribution name is set when loading, DMPlexTopologyLoad()
22971d1f2f2aSksagiyam   loads the parallel distribution stored in file under this name.
22981d1f2f2aSksagiyam 
22991d1f2f2aSksagiyam   Level: developer
23001d1f2f2aSksagiyam 
23011d1f2f2aSksagiyam .seealso: `DMPlexDistributionGetName()`, `DMPlexTopologyView()`, `DMPlexTopologyLoad()`
23021d1f2f2aSksagiyam @*/
2303d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributionSetName(DM dm, const char name[])
2304d71ae5a4SJacob Faibussowitsch {
23051d1f2f2aSksagiyam   DM_Plex *mesh = (DM_Plex *)dm->data;
23061d1f2f2aSksagiyam 
23071d1f2f2aSksagiyam   PetscFunctionBegin;
23081d1f2f2aSksagiyam   PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX);
23091d1f2f2aSksagiyam   if (name) PetscValidCharPointer(name, 2);
23101d1f2f2aSksagiyam   PetscCall(PetscFree(mesh->distributionName));
23111d1f2f2aSksagiyam   PetscCall(PetscStrallocpy(name, &mesh->distributionName));
23123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23131d1f2f2aSksagiyam }
23141d1f2f2aSksagiyam 
23151d1f2f2aSksagiyam /*@C
23161d1f2f2aSksagiyam   DMPlexDistributionGetName - Retrieve the name of the specific parallel distribution
23171d1f2f2aSksagiyam 
23181d1f2f2aSksagiyam   Input Parameter:
23191d1f2f2aSksagiyam . dm - The DM
23201d1f2f2aSksagiyam 
23211d1f2f2aSksagiyam   Output Parameter:
23221d1f2f2aSksagiyam . name - The name of the specific parallel distribution
23231d1f2f2aSksagiyam 
23241d1f2f2aSksagiyam   Note:
23251d1f2f2aSksagiyam   If distribution name is set when saving, DMPlexTopologyView() saves the plex's
23261d1f2f2aSksagiyam   parallel distribution (i.e., partition, ownership, and local ordering of points) under
23271d1f2f2aSksagiyam   this name. Conversely, if distribution name is set when loading, DMPlexTopologyLoad()
23281d1f2f2aSksagiyam   loads the parallel distribution stored in file under this name.
23291d1f2f2aSksagiyam 
23301d1f2f2aSksagiyam   Level: developer
23311d1f2f2aSksagiyam 
23321d1f2f2aSksagiyam .seealso: `DMPlexDistributionSetName()`, `DMPlexTopologyView()`, `DMPlexTopologyLoad()`
23331d1f2f2aSksagiyam @*/
2334d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexDistributionGetName(DM dm, const char *name[])
2335d71ae5a4SJacob Faibussowitsch {
23361d1f2f2aSksagiyam   DM_Plex *mesh = (DM_Plex *)dm->data;
23371d1f2f2aSksagiyam 
23381d1f2f2aSksagiyam   PetscFunctionBegin;
23391d1f2f2aSksagiyam   PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX);
23401d1f2f2aSksagiyam   PetscValidPointer(name, 2);
23411d1f2f2aSksagiyam   *name = mesh->distributionName;
23423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23431d1f2f2aSksagiyam }
2344