1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexGetAdjacencyUser()` 203c1f0c11SLawrence Mitchell @*/ 219371c9d4SSatish Balay PetscErrorCode DMPlexSetAdjacencyUser(DM dm, PetscErrorCode (*user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void *ctx) { 223c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 233c1f0c11SLawrence Mitchell 243c1f0c11SLawrence Mitchell PetscFunctionBegin; 253c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 263c1f0c11SLawrence Mitchell mesh->useradjacency = user; 273c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 283c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 293c1f0c11SLawrence Mitchell } 303c1f0c11SLawrence Mitchell 313c1f0c11SLawrence Mitchell /*@C 323c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 333c1f0c11SLawrence Mitchell 343c1f0c11SLawrence Mitchell Input Parameter: 353c1f0c11SLawrence Mitchell . dm - The DM object 363c1f0c11SLawrence Mitchell 373c1f0c11SLawrence Mitchell Output Parameters: 38ef1023bdSBarry Smith + user - The callback 393c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 403c1f0c11SLawrence Mitchell 413c1f0c11SLawrence Mitchell Level: advanced 423c1f0c11SLawrence Mitchell 43db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexGetAdjacency()`, `DMPlexSetAdjacencyUser()` 443c1f0c11SLawrence Mitchell @*/ 459371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM, PetscInt, PetscInt *, PetscInt[], void *), void **ctx) { 463c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 473c1f0c11SLawrence Mitchell 483c1f0c11SLawrence Mitchell PetscFunctionBegin; 493c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 503c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 513c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 523c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 533c1f0c11SLawrence Mitchell } 543c1f0c11SLawrence Mitchell 5570034214SMatthew G. Knepley /*@ 56a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 578b0b4c70SToby Isaac 588b0b4c70SToby Isaac Input Parameters: 598b0b4c70SToby Isaac + dm - The DM object 605b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 618b0b4c70SToby Isaac 628b0b4c70SToby Isaac Level: intermediate 638b0b4c70SToby Isaac 64db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 658b0b4c70SToby Isaac @*/ 669371c9d4SSatish Balay PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) { 678b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *)dm->data; 688b0b4c70SToby Isaac 698b0b4c70SToby Isaac PetscFunctionBegin; 708b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 715b317d89SToby Isaac mesh->useAnchors = useAnchors; 728b0b4c70SToby Isaac PetscFunctionReturn(0); 738b0b4c70SToby Isaac } 748b0b4c70SToby Isaac 758b0b4c70SToby Isaac /*@ 76a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac Input Parameter: 798b0b4c70SToby Isaac . dm - The DM object 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Output Parameter: 825b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Level: intermediate 858b0b4c70SToby Isaac 86db781477SPatrick Sanan .seealso: `DMPlexSetAdjacencyUseAnchors()`, `DMSetAdjacency()`, `DMGetAdjacency()`, `DMPlexDistribute()`, `DMPlexPreallocateOperator()`, `DMPlexSetAnchors()` 878b0b4c70SToby Isaac @*/ 889371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) { 898b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *)dm->data; 908b0b4c70SToby Isaac 918b0b4c70SToby Isaac PetscFunctionBegin; 928b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 93064a246eSJacob Faibussowitsch PetscValidBoolPointer(useAnchors, 2); 945b317d89SToby Isaac *useAnchors = mesh->useAnchors; 958b0b4c70SToby Isaac PetscFunctionReturn(0); 968b0b4c70SToby Isaac } 978b0b4c70SToby Isaac 989371c9d4SSatish Balay static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) { 9970034214SMatthew G. Knepley const PetscInt *cone = NULL; 10070034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10170034214SMatthew G. Knepley 10270034214SMatthew G. Knepley PetscFunctionBeginHot; 1039566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 1054b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1064b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c - 1]; 10770034214SMatthew G. Knepley const PetscInt *support = NULL; 10870034214SMatthew G. Knepley PetscInt supportSize, s, q; 10970034214SMatthew G. Knepley 1109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 11270034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 113527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]), 0); ++q) { 11470034214SMatthew G. Knepley if (support[s] == adj[q]) break; 11570034214SMatthew G. Knepley } 11663a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 11770034214SMatthew G. Knepley } 11870034214SMatthew G. Knepley } 11970034214SMatthew G. Knepley *adjSize = numAdj; 12070034214SMatthew G. Knepley PetscFunctionReturn(0); 12170034214SMatthew G. Knepley } 12270034214SMatthew G. Knepley 1239371c9d4SSatish Balay static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) { 12470034214SMatthew G. Knepley const PetscInt *support = NULL; 12570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 12670034214SMatthew G. Knepley 12770034214SMatthew G. Knepley PetscFunctionBeginHot; 1289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 1299566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 1304b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1314b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s - 1]; 13270034214SMatthew G. Knepley const PetscInt *cone = NULL; 13370034214SMatthew G. Knepley PetscInt coneSize, c, q; 13470034214SMatthew G. Knepley 1359566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 1369566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 13770034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 138527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]), 0); ++q) { 13970034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14070034214SMatthew G. Knepley } 14163a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 14270034214SMatthew G. Knepley } 14370034214SMatthew G. Knepley } 14470034214SMatthew G. Knepley *adjSize = numAdj; 14570034214SMatthew G. Knepley PetscFunctionReturn(0); 14670034214SMatthew G. Knepley } 14770034214SMatthew G. Knepley 1489371c9d4SSatish Balay static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) { 14970034214SMatthew G. Knepley PetscInt *star = NULL; 15070034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 15170034214SMatthew G. Knepley 15270034214SMatthew G. Knepley PetscFunctionBeginHot; 1539566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star)); 15470034214SMatthew G. Knepley for (s = 0; s < starSize * 2; s += 2) { 15570034214SMatthew G. Knepley const PetscInt *closure = NULL; 15670034214SMatthew G. Knepley PetscInt closureSize, c, q; 15770034214SMatthew G. Knepley 1589566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure)); 15970034214SMatthew G. Knepley for (c = 0; c < closureSize * 2; c += 2) { 160527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]), 0); ++q) { 16170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 16270034214SMatthew G. Knepley } 16363a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 16470034214SMatthew G. Knepley } 1659566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt **)&closure)); 16670034214SMatthew G. Knepley } 1679566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star)); 16870034214SMatthew G. Knepley *adjSize = numAdj; 16970034214SMatthew G. Knepley PetscFunctionReturn(0); 17070034214SMatthew G. Knepley } 17170034214SMatthew G. Knepley 1729371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) { 17379bad331SMatthew G. Knepley static PetscInt asiz = 0; 1748b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1758b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1768b0b4c70SToby Isaac PetscInt maxAdjSize; 1778b0b4c70SToby Isaac PetscSection aSec = NULL; 1788b0b4c70SToby Isaac IS aIS = NULL; 1798b0b4c70SToby Isaac const PetscInt *anchors; 1803c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 18170034214SMatthew G. Knepley 18270034214SMatthew G. Knepley PetscFunctionBeginHot; 1835b317d89SToby Isaac if (useAnchors) { 1849566063dSJacob Faibussowitsch PetscCall(DMPlexGetAnchors(dm, &aSec, &aIS)); 1858b0b4c70SToby Isaac if (aSec) { 1869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(aSec, &maxAnchors)); 18724c766afSToby Isaac maxAnchors = PetscMax(1, maxAnchors); 1889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(aSec, &aStart, &aEnd)); 1899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(aIS, &anchors)); 1908b0b4c70SToby Isaac } 1918b0b4c70SToby Isaac } 19279bad331SMatthew G. Knepley if (!*adj) { 19324c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 19479bad331SMatthew G. Knepley 1959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 1969566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 197412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 1989566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxC, &maxS)); 19924c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC, depth + 1) - 1) / (maxC - 1)) : depth + 1; 20024c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS, depth + 1) - 1) / (maxS - 1)) : depth + 1; 20124c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS, depth) * coneSeries, PetscPowInt(maxC, depth) * supportSeries); 2028b0b4c70SToby Isaac asiz *= maxAnchors; 20324c766afSToby Isaac asiz = PetscMin(asiz, pEnd - pStart); 2049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(asiz, adj)); 20579bad331SMatthew G. Knepley } 20679bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2078b0b4c70SToby Isaac maxAdjSize = *adjSize; 2083c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 2099566063dSJacob Faibussowitsch PetscCall((*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx)); 2103c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 2119566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj)); 21270034214SMatthew G. Knepley } else if (useCone) { 2139566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj)); 21470034214SMatthew G. Knepley } else { 2159566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj)); 21670034214SMatthew G. Knepley } 2175b317d89SToby Isaac if (useAnchors && aSec) { 2188b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2198b0b4c70SToby Isaac PetscInt numAdj = origSize; 2208b0b4c70SToby Isaac PetscInt i = 0, j; 2218b0b4c70SToby Isaac PetscInt *orig = *adj; 2228b0b4c70SToby Isaac 2238b0b4c70SToby Isaac while (i < origSize) { 2248b0b4c70SToby Isaac PetscInt p = orig[i]; 2258b0b4c70SToby Isaac PetscInt aDof = 0; 2268b0b4c70SToby Isaac 22748a46eb9SPierre Jolivet if (p >= aStart && p < aEnd) PetscCall(PetscSectionGetDof(aSec, p, &aDof)); 2288b0b4c70SToby Isaac if (aDof) { 2298b0b4c70SToby Isaac PetscInt aOff; 2308b0b4c70SToby Isaac PetscInt s, q; 2318b0b4c70SToby Isaac 232ad540459SPierre Jolivet for (j = i + 1; j < numAdj; j++) orig[j - 1] = orig[j]; 2338b0b4c70SToby Isaac origSize--; 2348b0b4c70SToby Isaac numAdj--; 2359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(aSec, p, &aOff)); 2368b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 237527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff + s]), 0); ++q) { 2388b0b4c70SToby Isaac if (anchors[aOff + s] == orig[q]) break; 2398b0b4c70SToby Isaac } 24063a3b9bcSJacob Faibussowitsch PetscCheck(numAdj <= maxAdjSize, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%" PetscInt_FMT ")", maxAdjSize); 2418b0b4c70SToby Isaac } 2429371c9d4SSatish Balay } else { 2438b0b4c70SToby Isaac i++; 2448b0b4c70SToby Isaac } 2458b0b4c70SToby Isaac } 2468b0b4c70SToby Isaac *adjSize = numAdj; 2479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(aIS, &anchors)); 2488b0b4c70SToby Isaac } 24970034214SMatthew G. Knepley PetscFunctionReturn(0); 25070034214SMatthew G. Knepley } 25170034214SMatthew G. Knepley 25270034214SMatthew G. Knepley /*@ 25370034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 25470034214SMatthew G. Knepley 25570034214SMatthew G. Knepley Input Parameters: 25670034214SMatthew G. Knepley + dm - The DM object 2576b867d5aSJose E. Roman - p - The point 25870034214SMatthew G. Knepley 2596b867d5aSJose E. Roman Input/Output Parameters: 2606b867d5aSJose E. Roman + adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE; 2616b867d5aSJose E. Roman on output the number of adjacent points 2626b867d5aSJose E. Roman - adj - Either NULL so that the array is allocated, or an existing array with size adjSize; 2636b867d5aSJose E. Roman on output contains the adjacent points 26470034214SMatthew G. Knepley 26570034214SMatthew G. Knepley Level: advanced 26670034214SMatthew G. Knepley 26795452b02SPatrick Sanan Notes: 26895452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 26970034214SMatthew G. Knepley 270db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMPlexDistribute()`, `DMCreateMatrix()`, `DMPlexPreallocateOperator()` 27170034214SMatthew G. Knepley @*/ 2729371c9d4SSatish Balay PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) { 2731cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 27470034214SMatthew G. Knepley 27570034214SMatthew G. Knepley PetscFunctionBeginHot; 27670034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 277dadcf809SJacob Faibussowitsch PetscValidIntPointer(adjSize, 3); 27870034214SMatthew G. Knepley PetscValidPointer(adj, 4); 2799566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 2809566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 2819566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj)); 28270034214SMatthew G. Knepley PetscFunctionReturn(0); 28370034214SMatthew G. Knepley } 28408633170SToby Isaac 285b0a623aaSMatthew G. Knepley /*@ 286b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 287b0a623aaSMatthew G. Knepley 288d083f849SBarry Smith Collective on dm 289b0a623aaSMatthew G. Knepley 290b0a623aaSMatthew G. Knepley Input Parameters: 291b0a623aaSMatthew G. Knepley + dm - The DM 2926b867d5aSJose E. Roman . sfPoint - The PetscSF which encodes point connectivity 2936b867d5aSJose E. Roman . rootRankSection - 2946b867d5aSJose E. Roman . rootRanks - 2956b867d5aSJose E. Roman . leftRankSection - 2966b867d5aSJose E. Roman - leafRanks - 297b0a623aaSMatthew G. Knepley 298b0a623aaSMatthew G. Knepley Output Parameters: 299b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 300b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 301b0a623aaSMatthew G. Knepley 302b0a623aaSMatthew G. Knepley Level: developer 303b0a623aaSMatthew G. Knepley 304db781477SPatrick Sanan .seealso: `PetscSFCreate()`, `DMPlexCreateProcessSF()` 305b0a623aaSMatthew G. Knepley @*/ 3069371c9d4SSatish Balay PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) { 307b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 308b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 309b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 310b0a623aaSMatthew G. Knepley const PetscInt *nranks; 311b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 312b0a623aaSMatthew G. Knepley PetscBT neighbors; 313b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3149852e123SBarry Smith PetscMPIInt size, proc, rank; 315b0a623aaSMatthew G. Knepley 316b0a623aaSMatthew G. Knepley PetscFunctionBegin; 317b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 318b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 319ad540459SPierre Jolivet if (processRanks) PetscValidPointer(processRanks, 7); 320ad540459SPierre Jolivet if (sfProcess) PetscValidPointer(sfProcess, 8); 3219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 3229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 3239566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints)); 3249566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(size, &neighbors)); 3259566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(size, neighbors)); 326b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 3279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(rootRankSection, &pStart, &pEnd)); 3289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootRanks, &nranks)); 329b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 330b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 331b0a623aaSMatthew G. Knepley 3329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootRankSection, p, &ndof)); 3339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootRankSection, p, &noff)); 3349566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n])); 335b0a623aaSMatthew G. Knepley } 3369566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootRanks, &nranks)); 337b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 3389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafRankSection, &pStart, &pEnd)); 3399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafRanks, &nranks)); 340b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 341b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 342b0a623aaSMatthew G. Knepley 3439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafRankSection, p, &ndof)); 3449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafRankSection, p, &noff)); 3459566063dSJacob Faibussowitsch for (n = 0; n < ndof; ++n) PetscCall(PetscBTSet(neighbors, nranks[noff + n])); 346b0a623aaSMatthew G. Knepley } 3479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafRanks, &nranks)); 348b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 349ad540459SPierre Jolivet for (l = 0; l < numLeaves; ++l) PetscBTSet(neighbors, remotePoints[l].rank); 350b0a623aaSMatthew G. Knepley /* Calculate edges */ 351b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3529371c9d4SSatish Balay for (proc = 0, numNeighbors = 0; proc < size; ++proc) { 3539371c9d4SSatish Balay if (PetscBTLookup(neighbors, proc)) ++numNeighbors; 3549371c9d4SSatish Balay } 3559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &ranksNew)); 3569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &localPointsNew)); 3579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numNeighbors, &remotePointsNew)); 3589852e123SBarry Smith for (proc = 0, n = 0; proc < size; ++proc) { 359b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 360b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 361b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 362b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 363b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 364b0a623aaSMatthew G. Knepley ++n; 365b0a623aaSMatthew G. Knepley } 366b0a623aaSMatthew G. Knepley } 3679566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&neighbors)); 3689566063dSJacob Faibussowitsch if (processRanks) PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks)); 3699566063dSJacob Faibussowitsch else PetscCall(PetscFree(ranksNew)); 370b0a623aaSMatthew G. Knepley if (sfProcess) { 3719566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess)); 3729566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*sfProcess, "Two-Sided Process SF")); 3739566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfProcess)); 3749566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER)); 375b0a623aaSMatthew G. Knepley } 376b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 377b0a623aaSMatthew G. Knepley } 378b0a623aaSMatthew G. Knepley 379b0a623aaSMatthew G. Knepley /*@ 380b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 381b0a623aaSMatthew G. Knepley 382d083f849SBarry Smith Collective on dm 383b0a623aaSMatthew G. Knepley 384b0a623aaSMatthew G. Knepley Input Parameter: 385b0a623aaSMatthew G. Knepley . dm - The DM 386b0a623aaSMatthew G. Knepley 387b0a623aaSMatthew G. Knepley Output Parameters: 388b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 389b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 390b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 391b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 392b0a623aaSMatthew G. Knepley 393b0a623aaSMatthew G. Knepley Level: developer 394b0a623aaSMatthew G. Knepley 395db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 396b0a623aaSMatthew G. Knepley @*/ 3979371c9d4SSatish Balay PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) { 398b0a623aaSMatthew G. Knepley MPI_Comm comm; 399b0a623aaSMatthew G. Knepley PetscSF sfPoint; 400b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 401b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 402b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 403b0a623aaSMatthew G. Knepley PetscMPIInt rank; 404b0a623aaSMatthew G. Knepley 405b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4089566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4099566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 410b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 4119566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)rootSection, "Root Section")); 4129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(rootSection, pStart, pEnd)); 4139566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 4149566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 4159566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(PetscSectionSetDof(rootSection, p, rootdegree[p - pStart])); 4169566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(rootSection)); 417b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 4189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(rootSection, &nedges)); 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd - pStart, &myrank)); 4209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nedges, &remoterank)); 421b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) myrank[p] = rank; 4229566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank)); 4239566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank)); 4249566063dSJacob Faibussowitsch PetscCall(PetscFree(myrank)); 4259566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank)); 426b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 4279566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)leafSection, "Leaf Section")); 4289566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank)); 429b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 430b0a623aaSMatthew G. Knepley } 431b0a623aaSMatthew G. Knepley 432c506a872SMatthew G. Knepley #if 0 433c506a872SMatthew G. Knepley static PetscErrorCode DMPlexCopyOverlapLabels(DM dm, DM ndm) 434c506a872SMatthew G. Knepley { 435c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 436c506a872SMatthew G. Knepley DM_Plex *nmesh = (DM_Plex *) ndm->data; 437c506a872SMatthew G. Knepley 438c506a872SMatthew G. Knepley PetscFunctionBegin; 439c506a872SMatthew G. Knepley if (mesh->numOvLabels) { 440c506a872SMatthew G. Knepley const char *name; 441c506a872SMatthew G. Knepley PetscInt l; 442c506a872SMatthew G. Knepley 443c506a872SMatthew G. Knepley nmesh->numOvLabels = mesh->numOvLabels; 444c506a872SMatthew G. Knepley for (l = 0; l < mesh->numOvLabels; ++l) { 445c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovLabels[l], &name)); 446c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovLabels[l])); 447c506a872SMatthew G. Knepley nmesh->ovValues[l] = mesh->ovValues[l]; 448c506a872SMatthew G. Knepley } 449c506a872SMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject) mesh->ovExLabel, &name)); 450c506a872SMatthew G. Knepley PetscCall(DMGetLabel(ndm, name, &nmesh->ovExLabel)); 451c506a872SMatthew G. Knepley nmesh->ovExValue = mesh->ovExValue; 452c506a872SMatthew G. Knepley } 453c506a872SMatthew G. Knepley PetscFunctionReturn(0); 454c506a872SMatthew G. Knepley } 455c506a872SMatthew G. Knepley #endif 456c506a872SMatthew G. Knepley 457278397a0SMatthew G. Knepley /*@C 458c506a872SMatthew G. Knepley DMPlexCreateOverlapLabel - Compute a label indicating what overlap points should be sent to new processes 459b0a623aaSMatthew G. Knepley 460d083f849SBarry Smith Collective on dm 461b0a623aaSMatthew G. Knepley 462b0a623aaSMatthew G. Knepley Input Parameters: 463b0a623aaSMatthew G. Knepley + dm - The DM 46424d039d7SMichael Lange . levels - Number of overlap levels 465b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 466b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 467b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 468b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 469b0a623aaSMatthew G. Knepley 470064ec1f3Sprj- Output Parameter: 471b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 472b0a623aaSMatthew G. Knepley 473b0a623aaSMatthew G. Knepley Level: developer 474b0a623aaSMatthew G. Knepley 475c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabelFromLabels()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 476b0a623aaSMatthew G. Knepley @*/ 4779371c9d4SSatish Balay PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) { 478e540f424SMichael Lange MPI_Comm comm; 479b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 480874ddda9SLisandro Dalcin PetscSF sfPoint; 481b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 482b0a623aaSMatthew G. Knepley const PetscInt *local; 4831fd9873aSMichael Lange const PetscInt *nrank, *rrank; 484b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4851fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4869852e123SBarry Smith PetscMPIInt rank, size; 48731bc6364SLisandro Dalcin PetscBool flg; 488b0a623aaSMatthew G. Knepley 489b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4906ba1a4c7SVaclav Hapla *ovLabel = NULL; 4919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4946ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 4959566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 4969566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 497d1674c6dSMatthew Knepley if (!levels) { 498d1674c6dSMatthew Knepley /* Add owned points */ 4999566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5009566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 501d1674c6dSMatthew Knepley PetscFunctionReturn(0); 502d1674c6dSMatthew Knepley } 5039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 5049566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 5059566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 506b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 507b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 508b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 509b0a623aaSMatthew G. Knepley 5109566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj)); 5119566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank)); 512b0a623aaSMatthew G. Knepley } 5139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rootrank, &rrank)); 5149566063dSJacob Faibussowitsch PetscCall(ISGetIndices(leafrank, &nrank)); 515b0a623aaSMatthew G. Knepley /* Handle roots */ 516b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 517b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 518b0a623aaSMatthew G. Knepley 519b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 520b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 5219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(leafSection, p, &neighbors)); 522b0a623aaSMatthew G. Knepley if (neighbors) { 5239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(leafSection, p, &noff)); 5249566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 525b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 526b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff + n]; 527b0a623aaSMatthew G. Knepley 528b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5299566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 530b0a623aaSMatthew G. Knepley } 531b0a623aaSMatthew G. Knepley } 532b0a623aaSMatthew G. Knepley } 533b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 5349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(rootSection, p, &neighbors)); 535b0a623aaSMatthew G. Knepley if (!neighbors) continue; 5369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(rootSection, p, &noff)); 5379566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 538b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 539b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff + n]; 540b0a623aaSMatthew G. Knepley 541b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 5429566063dSJacob Faibussowitsch for (a = 0; a < adjSize; ++a) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 543b0a623aaSMatthew G. Knepley } 544b0a623aaSMatthew G. Knepley } 5459566063dSJacob Faibussowitsch PetscCall(PetscFree(adj)); 5469566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rootrank, &rrank)); 5479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(leafrank, &nrank)); 54824d039d7SMichael Lange /* Add additional overlap levels */ 549be200f8dSMichael Lange for (l = 1; l < levels; l++) { 550be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 5519566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelPropagate(dm, ovAdjByRank)); 552be200f8dSMichael Lange /* Add next level of point donations to the label */ 5539566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelAdjacency(dm, ovAdjByRank)); 554be200f8dSMichael Lange } 55526a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5569566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 5579566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg)); 558e540f424SMichael Lange if (flg) { 559825f8a23SLisandro Dalcin PetscViewer viewer; 5609566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 5619566063dSJacob Faibussowitsch PetscCall(DMLabelView(ovAdjByRank, viewer)); 562b0a623aaSMatthew G. Knepley } 563874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 5649566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 5659566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 566a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 5679566063dSJacob Faibussowitsch for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 568e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 5699566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 5709566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 571e540f424SMichael Lange } 572e540f424SMichael Lange /* Clean up */ 5739566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&ovAdjByRank)); 574b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 575b0a623aaSMatthew G. Knepley } 57670034214SMatthew G. Knepley 5779371c9d4SSatish Balay static PetscErrorCode HandlePoint_Private(DM dm, PetscInt p, PetscSection section, const PetscInt ranks[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], DMLabel ovAdjByRank) { 578c506a872SMatthew G. Knepley PetscInt neighbors, el; 579c506a872SMatthew G. Knepley 580c506a872SMatthew G. Knepley PetscFunctionBegin; 581c506a872SMatthew G. Knepley PetscCall(PetscSectionGetDof(section, p, &neighbors)); 582c506a872SMatthew G. Knepley if (neighbors) { 583c506a872SMatthew G. Knepley PetscInt *adj = NULL; 584c506a872SMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, noff, n, a; 585c506a872SMatthew G. Knepley PetscMPIInt rank; 586c506a872SMatthew G. Knepley 587c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 588c506a872SMatthew G. Knepley PetscCall(PetscSectionGetOffset(section, p, &noff)); 589c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 590c506a872SMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 591c506a872SMatthew G. Knepley const PetscInt remoteRank = ranks[noff + n]; 592c506a872SMatthew G. Knepley 593c506a872SMatthew G. Knepley if (remoteRank == rank) continue; 594c506a872SMatthew G. Knepley for (a = 0; a < adjSize; ++a) { 595c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 596c506a872SMatthew G. Knepley 597c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 598c506a872SMatthew G. Knepley PetscInt exVal; 599c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 6009371c9d4SSatish Balay if (exVal == exValue[el]) { 6019371c9d4SSatish Balay insert = PETSC_FALSE; 6029371c9d4SSatish Balay break; 6039371c9d4SSatish Balay } 604c506a872SMatthew G. Knepley } 605c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 606c506a872SMatthew G. Knepley } 607c506a872SMatthew G. Knepley } 608*f88a03deSMatthew G. Knepley PetscCall(PetscFree(adj)); 609c506a872SMatthew G. Knepley } 610c506a872SMatthew G. Knepley PetscFunctionReturn(0); 611c506a872SMatthew G. Knepley } 612c506a872SMatthew G. Knepley 613c506a872SMatthew G. Knepley /*@C 614c506a872SMatthew G. Knepley DMPlexCreateOverlapLabelFromLabels - Compute a label indicating what overlap points should be sent to new processes 615c506a872SMatthew G. Knepley 616c506a872SMatthew G. Knepley Collective on dm 617c506a872SMatthew G. Knepley 618c506a872SMatthew G. Knepley Input Parameters: 619c506a872SMatthew G. Knepley + dm - The DM 620c506a872SMatthew G. Knepley . numLabels - The number of labels to draw candidate points from 621c506a872SMatthew G. Knepley . label - An array of labels containing candidate points 622c506a872SMatthew G. Knepley . value - An array of label values marking the candidate points 623c506a872SMatthew G. Knepley . numExLabels - The number of labels to use for exclusion 624c506a872SMatthew G. Knepley . exLabel - An array of labels indicating points to be excluded, or NULL 625c506a872SMatthew G. Knepley . exValue - An array of label values to be excluded, or NULL 626c506a872SMatthew G. Knepley . rootSection - The number of leaves for a given root point 627c506a872SMatthew G. Knepley . rootrank - The rank of each edge into the root point 628c506a872SMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 629c506a872SMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 630c506a872SMatthew G. Knepley 631c506a872SMatthew G. Knepley Output Parameter: 632c506a872SMatthew G. Knepley . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 633c506a872SMatthew G. Knepley 634c506a872SMatthew G. Knepley Note: 635c506a872SMatthew G. Knepley The candidate points are only added to the overlap if they are adjacent to a shared point 636c506a872SMatthew G. Knepley 637c506a872SMatthew G. Knepley Level: developer 638c506a872SMatthew G. Knepley 639c506a872SMatthew G. Knepley .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexGetAdjacency()`, `DMPlexDistributeOwnership()`, `DMPlexDistribute()` 640c506a872SMatthew G. Knepley @*/ 6419371c9d4SSatish Balay PetscErrorCode DMPlexCreateOverlapLabelFromLabels(DM dm, PetscInt numLabels, const DMLabel label[], const PetscInt value[], PetscInt numExLabels, const DMLabel exLabel[], const PetscInt exValue[], PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) { 642c506a872SMatthew G. Knepley MPI_Comm comm; 643c506a872SMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 644c506a872SMatthew G. Knepley PetscSF sfPoint; 645c506a872SMatthew G. Knepley const PetscSFNode *remote; 646c506a872SMatthew G. Knepley const PetscInt *local; 647c506a872SMatthew G. Knepley const PetscInt *nrank, *rrank; 648c506a872SMatthew G. Knepley PetscInt *adj = NULL; 649c506a872SMatthew G. Knepley PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l, el; 650c506a872SMatthew G. Knepley PetscMPIInt rank, size; 651c506a872SMatthew G. Knepley PetscBool flg; 652c506a872SMatthew G. Knepley 653c506a872SMatthew G. Knepley PetscFunctionBegin; 654c506a872SMatthew G. Knepley *ovLabel = NULL; 655c506a872SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 656c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 657c506a872SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 658c506a872SMatthew G. Knepley if (size == 1) PetscFunctionReturn(0); 659c506a872SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sfPoint)); 660c506a872SMatthew G. Knepley PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 661c506a872SMatthew G. Knepley PetscCall(PetscSectionGetChart(leafSection, &sStart, &sEnd)); 662c506a872SMatthew G. Knepley PetscCall(PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote)); 663c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank)); 664c506a872SMatthew G. Knepley PetscCall(ISGetIndices(rootrank, &rrank)); 665c506a872SMatthew G. Knepley PetscCall(ISGetIndices(leafrank, &nrank)); 666c506a872SMatthew G. Knepley for (l = 0; l < numLabels; ++l) { 667c506a872SMatthew G. Knepley IS valIS; 668c506a872SMatthew G. Knepley const PetscInt *points; 669c506a872SMatthew G. Knepley PetscInt n; 670c506a872SMatthew G. Knepley 671c506a872SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label[l], value[l], &valIS)); 672c506a872SMatthew G. Knepley if (!valIS) continue; 673c506a872SMatthew G. Knepley PetscCall(ISGetIndices(valIS, &points)); 674c506a872SMatthew G. Knepley PetscCall(ISGetLocalSize(valIS, &n)); 675c506a872SMatthew G. Knepley for (PetscInt i = 0; i < n; ++i) { 676c506a872SMatthew G. Knepley const PetscInt p = points[i]; 677c506a872SMatthew G. Knepley 678c506a872SMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 679c506a872SMatthew G. Knepley PetscInt loc, adjSize = PETSC_DETERMINE; 680c506a872SMatthew G. Knepley 681c506a872SMatthew G. Knepley /* Handle leaves: shared with the root point */ 682c506a872SMatthew G. Knepley if (local) PetscCall(PetscFindInt(p, nleaves, local, &loc)); 683c506a872SMatthew G. Knepley else loc = (p >= 0 && p < nleaves) ? p : -1; 684c506a872SMatthew G. Knepley if (loc >= 0) { 685c506a872SMatthew G. Knepley const PetscInt remoteRank = remote[loc].rank; 686c506a872SMatthew G. Knepley 687c506a872SMatthew G. Knepley PetscCall(DMPlexGetAdjacency(dm, p, &adjSize, &adj)); 688c506a872SMatthew G. Knepley for (PetscInt a = 0; a < adjSize; ++a) { 689c506a872SMatthew G. Knepley PetscBool insert = PETSC_TRUE; 690c506a872SMatthew G. Knepley 691c506a872SMatthew G. Knepley for (el = 0; el < numExLabels; ++el) { 692c506a872SMatthew G. Knepley PetscInt exVal; 693c506a872SMatthew G. Knepley PetscCall(DMLabelGetValue(exLabel[el], adj[a], &exVal)); 6949371c9d4SSatish Balay if (exVal == exValue[el]) { 6959371c9d4SSatish Balay insert = PETSC_FALSE; 6969371c9d4SSatish Balay break; 6979371c9d4SSatish Balay } 698c506a872SMatthew G. Knepley } 699c506a872SMatthew G. Knepley if (insert) PetscCall(DMLabelSetValue(ovAdjByRank, adj[a], remoteRank)); 700c506a872SMatthew G. Knepley } 701c506a872SMatthew G. Knepley } 702c506a872SMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 703c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, leafSection, nrank, numExLabels, exLabel, exValue, ovAdjByRank); 704c506a872SMatthew G. Knepley } 705c506a872SMatthew G. Knepley /* Roots are shared with leaves */ 706c506a872SMatthew G. Knepley HandlePoint_Private(dm, p, rootSection, rrank, numExLabels, exLabel, exValue, ovAdjByRank); 707c506a872SMatthew G. Knepley } 708c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(valIS, &points)); 709c506a872SMatthew G. Knepley PetscCall(ISDestroy(&valIS)); 710c506a872SMatthew G. Knepley } 711c506a872SMatthew G. Knepley PetscCall(PetscFree(adj)); 712c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(rootrank, &rrank)); 713c506a872SMatthew G. Knepley PetscCall(ISRestoreIndices(leafrank, &nrank)); 714c506a872SMatthew G. Knepley /* We require the closure in the overlap */ 715c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelClosure(dm, ovAdjByRank)); 716c506a872SMatthew G. Knepley PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-overlap_view", &flg)); 717c506a872SMatthew G. Knepley if (flg) { 718c506a872SMatthew G. Knepley PetscViewer viewer; 719c506a872SMatthew G. Knepley PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer)); 720c506a872SMatthew G. Knepley PetscCall(DMLabelView(ovAdjByRank, viewer)); 721c506a872SMatthew G. Knepley } 722c506a872SMatthew G. Knepley /* Invert sender to receiver label */ 723c506a872SMatthew G. Knepley PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel)); 724c506a872SMatthew G. Knepley PetscCall(DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel)); 725c506a872SMatthew G. Knepley /* Add owned points, except for shared local points */ 726c506a872SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) PetscCall(DMLabelSetValue(*ovLabel, p, rank)); 727c506a872SMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 728c506a872SMatthew G. Knepley PetscCall(DMLabelClearValue(*ovLabel, local[l], rank)); 729c506a872SMatthew G. Knepley PetscCall(DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank)); 730c506a872SMatthew G. Knepley } 731c506a872SMatthew G. Knepley /* Clean up */ 732c506a872SMatthew G. Knepley PetscCall(DMLabelDestroy(&ovAdjByRank)); 733c506a872SMatthew G. Knepley PetscFunctionReturn(0); 734c506a872SMatthew G. Knepley } 735c506a872SMatthew G. Knepley 73624cc2ca5SMatthew G. Knepley /*@C 73724cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 73824cc2ca5SMatthew G. Knepley 739d083f849SBarry Smith Collective on dm 74024cc2ca5SMatthew G. Knepley 74124cc2ca5SMatthew G. Knepley Input Parameters: 74224cc2ca5SMatthew G. Knepley + dm - The DM 74324cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 74424cc2ca5SMatthew G. Knepley 745064ec1f3Sprj- Output Parameter: 746a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 74724cc2ca5SMatthew G. Knepley 74824cc2ca5SMatthew G. Knepley Level: developer 74924cc2ca5SMatthew G. Knepley 750db781477SPatrick Sanan .seealso: `DMPlexCreateOverlapLabel()`, `DMPlexDistributeOverlap()`, `DMPlexDistribute()` 75124cc2ca5SMatthew G. Knepley @*/ 7529371c9d4SSatish Balay PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) { 75346f9b1c3SMichael Lange MPI_Comm comm; 7549852e123SBarry Smith PetscMPIInt rank, size; 75546f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 75646f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 75746f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 75846f9b1c3SMichael Lange PetscSFNode *iremote; 75946f9b1c3SMichael Lange PetscSF pointSF; 76046f9b1c3SMichael Lange const PetscInt *sharedLocal; 76146f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 76246f9b1c3SMichael Lange 76346f9b1c3SMichael Lange PetscFunctionBegin; 76446f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 7669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 7679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 7689566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 76946f9b1c3SMichael Lange 77046f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 7719566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote)); 7729566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 77346f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 7749566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 77546f9b1c3SMichael Lange for (p = pStart; p < pEnd; p++) pointDepths[p] = d; 77646f9b1c3SMichael Lange } 77746f9b1c3SMichael Lange for (p = 0; p < nleaves; p++) remoteDepths[p] = -1; 7789566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE)); 7799566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths, MPI_REPLACE)); 78046f9b1c3SMichael Lange 7812d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 7829566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim + 1, &depthRecv, dim + 1, &depthShift, dim + 1, &depthIdx)); 78346f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) depthRecv[d] = 0; 78446f9b1c3SMichael Lange for (p = 0; p < nleaves; p++) depthRecv[remoteDepths[p]]++; 78546f9b1c3SMichael Lange depthShift[dim] = 0; 78646f9b1c3SMichael Lange for (d = 0; d < dim; d++) depthShift[d] = depthRecv[dim]; 78746f9b1c3SMichael Lange for (d = 1; d < dim; d++) depthShift[d] += depthRecv[0]; 78846f9b1c3SMichael Lange for (d = dim - 2; d > 0; d--) depthShift[d] += depthRecv[d + 1]; 78946f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 7909566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 79146f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 79246f9b1c3SMichael Lange } 79346f9b1c3SMichael Lange 79446f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 7959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 79646f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 7979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &ilocal)); 7989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(newLeaves, &iremote)); 79946f9b1c3SMichael Lange /* First map local points to themselves */ 80046f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 8019566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 80246f9b1c3SMichael Lange for (p = pStart; p < pEnd; p++) { 80346f9b1c3SMichael Lange point = p + depthShift[d]; 80446f9b1c3SMichael Lange ilocal[point] = point; 80546f9b1c3SMichael Lange iremote[point].index = p; 80646f9b1c3SMichael Lange iremote[point].rank = rank; 80746f9b1c3SMichael Lange depthIdx[d]++; 80846f9b1c3SMichael Lange } 80946f9b1c3SMichael Lange } 81046f9b1c3SMichael Lange 81146f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 8129566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &pointSF)); 8139566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote)); 81446f9b1c3SMichael Lange for (d = 0; d < dim + 1; d++) { 8159566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 81646f9b1c3SMichael Lange for (p = 0; p < numSharedPoints; p++) { 81746f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 81846f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 81946f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 82046f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 82146f9b1c3SMichael Lange } 82246f9b1c3SMichael Lange } 82346f9b1c3SMichael Lange } 82446f9b1c3SMichael Lange 82546f9b1c3SMichael Lange /* Now add the incoming overlap points */ 82646f9b1c3SMichael Lange for (p = 0; p < nleaves; p++) { 82746f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 82846f9b1c3SMichael Lange ilocal[point] = point; 82946f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 83046f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 83146f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 83246f9b1c3SMichael Lange } 8339566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths, remoteDepths)); 83446f9b1c3SMichael Lange 8359566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 8369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Overlap Migration SF")); 8379566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*migrationSF)); 8389566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 8399566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, pEnd - pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 84046f9b1c3SMichael Lange 8419566063dSJacob Faibussowitsch PetscCall(PetscFree3(depthRecv, depthShift, depthIdx)); 84270034214SMatthew G. Knepley PetscFunctionReturn(0); 84370034214SMatthew G. Knepley } 84470034214SMatthew G. Knepley 845a9f1d5b2SMichael Lange /*@ 846f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 847a9f1d5b2SMichael Lange 848064ec1f3Sprj- Input Parameters: 849a9f1d5b2SMichael Lange + dm - The DM 850a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 851a9f1d5b2SMichael Lange 852a9f1d5b2SMichael Lange Output Parameter: 853a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 854a9f1d5b2SMichael Lange 855412e9a14SMatthew G. Knepley Note: 856412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 857412e9a14SMatthew G. Knepley 858a9f1d5b2SMichael Lange Level: developer 859a9f1d5b2SMichael Lange 860db781477SPatrick Sanan .seealso: `DMPlexPartitionLabelCreateSF()`, `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 861a9f1d5b2SMichael Lange @*/ 8629371c9d4SSatish Balay PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) { 863a9f1d5b2SMichael Lange MPI_Comm comm; 8649852e123SBarry Smith PetscMPIInt rank, size; 865412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 866412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 867412e9a14SMatthew G. Knepley PetscInt *ilocal; 868a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 869412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 870a9f1d5b2SMichael Lange const PetscSFNode *iremote; 871a9f1d5b2SMichael Lange 872a9f1d5b2SMichael Lange PetscFunctionBegin; 873a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 8759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 8769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 8779566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &ldepth)); 8789566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8791c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm)); 88063a3b9bcSJacob Faibussowitsch PetscCheck(!(ldepth >= 0) || !(depth != ldepth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, ldepth, depth); 8819566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartStratSF, dm, 0, 0, 0)); 882a9f1d5b2SMichael Lange 883a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 8849566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote)); 8859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths)); 8867fab53ddSMatthew G. Knepley for (d = 0; d < depth + 1; ++d) { 8879566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 888f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 889412e9a14SMatthew G. Knepley DMPolytopeType ct; 890f0e73a3dSToby Isaac 8919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 892412e9a14SMatthew G. Knepley pointDepths[p].index = d; 893412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 894f0e73a3dSToby Isaac } 895412e9a14SMatthew G. Knepley } 8969371c9d4SSatish Balay for (p = 0; p < nleaves; ++p) { 8979371c9d4SSatish Balay remoteDepths[p].index = -1; 8989371c9d4SSatish Balay remoteDepths[p].rank = -1; 8999371c9d4SSatish Balay } 9009566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE)); 9019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths, MPI_REPLACE)); 902412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 9039566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(depth + 1, &depthRecv, depth + 1, &depthShift, depth + 1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx)); 904412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 905412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 906412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 907412e9a14SMatthew G. Knepley } else { 908412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 909412e9a14SMatthew G. Knepley } 910412e9a14SMatthew G. Knepley } 911412e9a14SMatthew G. Knepley { 912412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 913412e9a14SMatthew G. Knepley 9148238f61eSMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) 9158238f61eSMatthew G. Knepley Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells 9168238f61eSMatthew G. Knepley */ 9179371c9d4SSatish Balay depths[0] = depth; 9189371c9d4SSatish Balay depths[1] = 0; 9199371c9d4SSatish Balay depths[2] = depth - 1; 9209371c9d4SSatish Balay depths[3] = 1; 9219371c9d4SSatish Balay dims[0] = dim; 9229371c9d4SSatish Balay dims[1] = 0; 9239371c9d4SSatish Balay dims[2] = dim - 1; 9249371c9d4SSatish Balay dims[3] = 1; 925412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 926412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 927412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 928412e9a14SMatthew G. Knepley 929412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 9308238f61eSMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType)c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue; 931412e9a14SMatthew G. Knepley ctShift[c] = shift; 932412e9a14SMatthew G. Knepley shift += ctRecv[c]; 933412e9a14SMatthew G. Knepley } 934412e9a14SMatthew G. Knepley depthShift[dep] = shift; 935412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 936412e9a14SMatthew G. Knepley } 937412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 938412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType)c); 939412e9a14SMatthew G. Knepley 9408238f61eSMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) { 941412e9a14SMatthew G. Knepley ctShift[c] = shift; 942412e9a14SMatthew G. Knepley shift += ctRecv[c]; 943412e9a14SMatthew G. Knepley } 944412e9a14SMatthew G. Knepley } 945412e9a14SMatthew G. Knepley } 946a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 9479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &ilocal)); 9487fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 949412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 950412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType)remoteDepths[p].rank; 9517fab53ddSMatthew G. Knepley 952412e9a14SMatthew G. Knepley if ((PetscInt)ct < 0) { 9537fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 954412e9a14SMatthew G. Knepley ++depthIdx[dep]; 955412e9a14SMatthew G. Knepley } else { 956412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 957412e9a14SMatthew G. Knepley ++ctIdx[ct]; 958412e9a14SMatthew G. Knepley } 959a9f1d5b2SMichael Lange } 9609566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, migrationSF)); 9619566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*migrationSF, "Migration SF")); 9629566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 9639566063dSJacob Faibussowitsch PetscCall(PetscFree2(pointDepths, remoteDepths)); 9649566063dSJacob Faibussowitsch PetscCall(PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx)); 9659566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartStratSF, dm, 0, 0, 0)); 966a9f1d5b2SMichael Lange PetscFunctionReturn(0); 967a9f1d5b2SMichael Lange } 968a9f1d5b2SMichael Lange 96970034214SMatthew G. Knepley /*@ 97070034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 97170034214SMatthew G. Knepley 972d083f849SBarry Smith Collective on dm 97370034214SMatthew G. Knepley 97470034214SMatthew G. Knepley Input Parameters: 97570034214SMatthew G. Knepley + dm - The DMPlex object 97670034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 97770034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 978cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 97970034214SMatthew G. Knepley 98070034214SMatthew G. Knepley Output Parameters: 98170034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 982cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 98370034214SMatthew G. Knepley 98470034214SMatthew G. Knepley Level: developer 98570034214SMatthew G. Knepley 986db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeFieldIS()`, `DMPlexDistributeData()` 98770034214SMatthew G. Knepley @*/ 9889371c9d4SSatish Balay PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) { 98970034214SMatthew G. Knepley PetscSF fieldSF; 99070034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 99170034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 99270034214SMatthew G. Knepley 99370034214SMatthew G. Knepley PetscFunctionBegin; 9949566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0)); 9959566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 99670034214SMatthew G. Knepley 9979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 9989566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newVec, fieldSize, PETSC_DETERMINE)); 9999566063dSJacob Faibussowitsch PetscCall(VecSetType(newVec, dm->vectype)); 100070034214SMatthew G. Knepley 10019566063dSJacob Faibussowitsch PetscCall(VecGetArray(originalVec, &originalValues)); 10029566063dSJacob Faibussowitsch PetscCall(VecGetArray(newVec, &newValues)); 10039566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10049566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10059566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE)); 10069566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues, MPI_REPLACE)); 10079566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newVec, &newValues)); 10099566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(originalVec, &originalValues)); 10109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0)); 101170034214SMatthew G. Knepley PetscFunctionReturn(0); 101270034214SMatthew G. Knepley } 101370034214SMatthew G. Knepley 101470034214SMatthew G. Knepley /*@ 101570034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 101670034214SMatthew G. Knepley 1017d083f849SBarry Smith Collective on dm 101870034214SMatthew G. Knepley 101970034214SMatthew G. Knepley Input Parameters: 102070034214SMatthew G. Knepley + dm - The DMPlex object 102170034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 102270034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 102370034214SMatthew G. Knepley - originalIS - The existing data 102470034214SMatthew G. Knepley 102570034214SMatthew G. Knepley Output Parameters: 102670034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 102770034214SMatthew G. Knepley - newIS - The new data 102870034214SMatthew G. Knepley 102970034214SMatthew G. Knepley Level: developer 103070034214SMatthew G. Knepley 1031db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()`, `DMPlexDistributeData()` 103270034214SMatthew G. Knepley @*/ 10339371c9d4SSatish Balay PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) { 103470034214SMatthew G. Knepley PetscSF fieldSF; 103570034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 103670034214SMatthew G. Knepley const PetscInt *originalValues; 103770034214SMatthew G. Knepley 103870034214SMatthew G. Knepley PetscFunctionBegin; 10399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeField, dm, 0, 0, 0)); 10409566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 104170034214SMatthew G. Knepley 10429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSize, &newValues)); 104470034214SMatthew G. Knepley 10459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(originalIS, &originalValues)); 10469566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10479566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE)); 10499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *)originalValues, newValues, MPI_REPLACE)); 10509566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(originalIS, &originalValues)); 10529566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS)); 10539566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeField, dm, 0, 0, 0)); 105470034214SMatthew G. Knepley PetscFunctionReturn(0); 105570034214SMatthew G. Knepley } 105670034214SMatthew G. Knepley 105770034214SMatthew G. Knepley /*@ 105870034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 105970034214SMatthew G. Knepley 1060d083f849SBarry Smith Collective on dm 106170034214SMatthew G. Knepley 106270034214SMatthew G. Knepley Input Parameters: 106370034214SMatthew G. Knepley + dm - The DMPlex object 106470034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 106570034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 106670034214SMatthew G. Knepley . datatype - The type of data 106770034214SMatthew G. Knepley - originalData - The existing data 106870034214SMatthew G. Knepley 106970034214SMatthew G. Knepley Output Parameters: 107070034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 107170034214SMatthew G. Knepley - newData - The new data 107270034214SMatthew G. Knepley 107370034214SMatthew G. Knepley Level: developer 107470034214SMatthew G. Knepley 1075db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeField()` 107670034214SMatthew G. Knepley @*/ 10779371c9d4SSatish Balay PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) { 107870034214SMatthew G. Knepley PetscSF fieldSF; 107970034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 108070034214SMatthew G. Knepley PetscMPIInt dataSize; 108170034214SMatthew G. Knepley 108270034214SMatthew G. Knepley PetscFunctionBegin; 10839566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeData, dm, 0, 0, 0)); 10849566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection)); 108570034214SMatthew G. Knepley 10869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newSection, &fieldSize)); 10879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(datatype, &dataSize)); 10889566063dSJacob Faibussowitsch PetscCall(PetscMalloc(fieldSize * dataSize, newData)); 108970034214SMatthew G. Knepley 10909566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF)); 10919566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 10929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(fieldSF, datatype, originalData, *newData, MPI_REPLACE)); 10939566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(fieldSF, datatype, originalData, *newData, MPI_REPLACE)); 10949566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&fieldSF)); 10959566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeData, dm, 0, 0, 0)); 109670034214SMatthew G. Knepley PetscFunctionReturn(0); 109770034214SMatthew G. Knepley } 109870034214SMatthew G. Knepley 10999371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) { 1100cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex *)(dmParallel)->data; 1101cc71bff1SMichael Lange MPI_Comm comm; 1102cc71bff1SMichael Lange PetscSF coneSF; 1103cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 1104ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 1105cc71bff1SMichael Lange PetscBool flg; 1106cc71bff1SMichael Lange 1107cc71bff1SMichael Lange PetscFunctionBegin; 1108cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11090c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 11109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeCones, dm, 0, 0, 0)); 1111cc71bff1SMichael Lange /* Distribute cone section */ 11129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11139566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dm, &originalConeSection)); 11149566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSection(dmParallel, &newConeSection)); 11159566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection)); 11169566063dSJacob Faibussowitsch PetscCall(DMSetUp(dmParallel)); 1117cc71bff1SMichael Lange /* Communicate and renumber cones */ 11189566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF)); 11199566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 11209566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dm, &cones)); 1121ac04eaf7SToby Isaac if (original) { 1122ac04eaf7SToby Isaac PetscInt numCones; 1123ac04eaf7SToby Isaac 11249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(originalConeSection, &numCones)); 11259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numCones, &globCones)); 11269566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones)); 1127367003a6SStefano Zampini } else { 1128ac04eaf7SToby Isaac globCones = cones; 1129ac04eaf7SToby Isaac } 11309566063dSJacob Faibussowitsch PetscCall(DMPlexGetCones(dmParallel, &newCones)); 11319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE)); 11329566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones, MPI_REPLACE)); 11331baa6e33SBarry Smith if (original) PetscCall(PetscFree(globCones)); 11349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newConeSection, &newConesSize)); 11359566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones)); 113676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11373533c52bSMatthew G. Knepley PetscInt p; 11383533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 11393533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 11409371c9d4SSatish Balay if (newCones[p] < 0) { 11419371c9d4SSatish Balay valid = PETSC_FALSE; 11429371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, "[%d] Point %" PetscInt_FMT " not in overlap SF\n", PetscGlobalRank, p)); 11439371c9d4SSatish Balay } 11443533c52bSMatthew G. Knepley } 114528b400f6SJacob Faibussowitsch PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11463533c52bSMatthew G. Knepley } 11479566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-cones_view", &flg)); 1148cc71bff1SMichael Lange if (flg) { 11499566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Cone Section:\n")); 11509566063dSJacob Faibussowitsch PetscCall(PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm))); 11519566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Cone Section:\n")); 11529566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm))); 11539566063dSJacob Faibussowitsch PetscCall(PetscSFView(coneSF, NULL)); 1154cc71bff1SMichael Lange } 11559566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dm, &cones)); 11569566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientations(dmParallel, &newCones)); 11579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE)); 11589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones, MPI_REPLACE)); 11599566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coneSF)); 11609566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeCones, dm, 0, 0, 0)); 1161eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1162cc71bff1SMichael Lange { 1163cc71bff1SMichael Lange PetscInt pStart, pEnd; 1164cc71bff1SMichael Lange 11659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd)); 11669566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pmesh->supportSection, pStart, pEnd)); 1167cc71bff1SMichael Lange } 11689566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(dmParallel)); 11699566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(dmParallel)); 11701cf84007SMatthew G. Knepley { 11711cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 11721cf84007SMatthew G. Knepley 11739566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 11749566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 11759566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 11769566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 11771cf84007SMatthew G. Knepley } 1178cc71bff1SMichael Lange PetscFunctionReturn(0); 1179cc71bff1SMichael Lange } 1180cc71bff1SMichael Lange 11819371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) { 11820df0e737SMichael Lange MPI_Comm comm; 11839318fe57SMatthew G. Knepley DM cdm, cdmParallel; 11840df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 11850df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 11860df0e737SMichael Lange PetscInt bs; 11870df0e737SMichael Lange const char *name; 11884fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 11890df0e737SMichael Lange 11900df0e737SMichael Lange PetscFunctionBegin; 11910df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11920c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 11930df0e737SMichael Lange 11949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11956858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(dm, &cdm)); 11966858538eSMatthew G. Knepley PetscCall(DMGetCoordinateDM(dmParallel, &cdmParallel)); 11976858538eSMatthew G. Knepley PetscCall(DMCopyDisc(cdm, cdmParallel)); 11989566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &originalCoordSection)); 11999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dmParallel, &newCoordSection)); 12009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &originalCoordinates)); 12010df0e737SMichael Lange if (originalCoordinates) { 12029566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 12039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name)); 12049566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name)); 12050df0e737SMichael Lange 12069566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12079566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmParallel, newCoordinates)); 12089566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12099566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, bs)); 12109566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 12110df0e737SMichael Lange } 12126858538eSMatthew G. Knepley 12136858538eSMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12144fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 12154fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(dmParallel, maxCell, Lstart, L)); 12166858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(dm, &cdm)); 12176858538eSMatthew G. Knepley if (cdm) { 12186858538eSMatthew G. Knepley PetscCall(DMClone(dmParallel, &cdmParallel)); 12196858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateDM(dmParallel, cdmParallel)); 12209566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(cdm, cdmParallel)); 12216858538eSMatthew G. Knepley PetscCall(DMDestroy(&cdmParallel)); 12226858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateSection(dm, &originalCoordSection)); 12236858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &originalCoordinates)); 12246858538eSMatthew G. Knepley PetscCall(PetscSectionCreate(comm, &newCoordSection)); 12256858538eSMatthew G. Knepley if (originalCoordinates) { 12266858538eSMatthew G. Knepley PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 12276858538eSMatthew G. Knepley PetscCall(PetscObjectGetName((PetscObject)originalCoordinates, &name)); 12286858538eSMatthew G. Knepley PetscCall(PetscObjectSetName((PetscObject)newCoordinates, name)); 12296858538eSMatthew G. Knepley 12306858538eSMatthew G. Knepley PetscCall(DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates)); 12316858538eSMatthew G. Knepley PetscCall(VecGetBlockSize(originalCoordinates, &bs)); 12326858538eSMatthew G. Knepley PetscCall(VecSetBlockSize(newCoordinates, bs)); 12336858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinateSection(dmParallel, bs, newCoordSection)); 12346858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(dmParallel, newCoordinates)); 12356858538eSMatthew G. Knepley PetscCall(VecDestroy(&newCoordinates)); 12366858538eSMatthew G. Knepley } 12376858538eSMatthew G. Knepley PetscCall(PetscSectionDestroy(&newCoordSection)); 12386858538eSMatthew G. Knepley } 12390df0e737SMichael Lange PetscFunctionReturn(0); 12400df0e737SMichael Lange } 12410df0e737SMichael Lange 12429371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) { 1243df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 12440df0e737SMichael Lange MPI_Comm comm; 12457980c9d4SMatthew G. Knepley DMLabel depthLabel; 12460df0e737SMichael Lange PetscMPIInt rank; 12477980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1248df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1249df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 12500df0e737SMichael Lange 12510df0e737SMichael Lange PetscFunctionBegin; 12520df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12530c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12540c86c063SLisandro Dalcin 12559566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeLabels, dm, 0, 0, 0)); 12569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 12580df0e737SMichael Lange 1259df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 12609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 12619566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 12629566063dSJacob Faibussowitsch if (depthLabel) PetscCall(PetscObjectStateGet((PetscObject)depthLabel, &depthState)); 1263df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 12641c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm)); 1265df0420ecSMatthew G. Knepley if (sendDepth) { 12669566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel)); 12679566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE)); 1268df0420ecSMatthew G. Knepley } 1269d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 12709566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLocalLabels)); 1271d995df53SMatthew G. Knepley numLabels = numLocalLabels; 12729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm)); 1273627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 12745d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1275bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 127683e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1277d67d17b1SMatthew G. Knepley const char *name = NULL; 12780df0e737SMichael Lange 1279d67d17b1SMatthew G. Knepley if (hasLabels) { 12809566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 12810df0e737SMichael Lange /* Skip "depth" because it is recreated */ 12829566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 12839566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &isDepth)); 1284d67d17b1SMatthew G. Knepley } 12859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm)); 128683e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 12879566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, migrationSF, &labelNew)); 128883e10cb3SLisandro Dalcin if (isDepth) { 12897980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 12907980c9d4SMatthew G. Knepley PetscInt gdepth; 12917980c9d4SMatthew G. Knepley 12921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm)); 129363a3b9bcSJacob Faibussowitsch PetscCheck(!(depth >= 0) || !(gdepth != depth), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %" PetscInt_FMT " != %" PetscInt_FMT, depth, gdepth); 12947980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 12957980c9d4SMatthew G. Knepley PetscBool has; 12967980c9d4SMatthew G. Knepley 12979566063dSJacob Faibussowitsch PetscCall(DMLabelHasStratum(labelNew, d, &has)); 12989566063dSJacob Faibussowitsch if (!has) PetscCall(DMLabelAddStratum(labelNew, d)); 12997980c9d4SMatthew G. Knepley } 13007980c9d4SMatthew G. Knepley } 13019566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmParallel, labelNew)); 130283e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 13039566063dSJacob Faibussowitsch if (hasLabels) PetscCall(DMGetLabelOutput(dm, name, &lisOutput)); 13041c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm)); 13059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)labelNew, &name)); 13069566063dSJacob Faibussowitsch PetscCall(DMSetLabelOutput(dmParallel, name, isOutput)); 13079566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&labelNew)); 13080df0e737SMichael Lange } 1309695799ffSMatthew G. Knepley { 1310695799ffSMatthew G. Knepley DMLabel ctLabel; 1311695799ffSMatthew G. Knepley 1312695799ffSMatthew G. Knepley // Reset label for fast lookup 1313695799ffSMatthew G. Knepley PetscCall(DMPlexGetCellTypeLabel(dmParallel, &ctLabel)); 1314695799ffSMatthew G. Knepley PetscCall(DMLabelMakeAllInvalid_Internal(ctLabel)); 1315695799ffSMatthew G. Knepley } 13169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeLabels, dm, 0, 0, 0)); 13170df0e737SMichael Lange PetscFunctionReturn(0); 13180df0e737SMichael Lange } 13190df0e737SMichael Lange 13209371c9d4SSatish Balay static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) { 132115078cd4SMichael Lange DM_Plex *mesh = (DM_Plex *)dm->data; 132215078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex *)(dmParallel)->data; 1323a6f36705SMichael Lange MPI_Comm comm; 1324a6f36705SMichael Lange DM refTree; 1325a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1326a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1327a6f36705SMichael Lange PetscBool flg; 1328a6f36705SMichael Lange 1329a6f36705SMichael Lange PetscFunctionBegin; 1330a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13310c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 13329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1333a6f36705SMichael Lange 1334a6f36705SMichael Lange /* Set up tree */ 13359566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm, &refTree)); 13369566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmParallel, refTree)); 13379566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm, &origParentSection, &origParents, &origChildIDs, NULL, NULL)); 1338a6f36705SMichael Lange if (origParentSection) { 1339a6f36705SMichael Lange PetscInt pStart, pEnd; 134008633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1341a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1342a6f36705SMichael Lange PetscSF parentSF; 1343a6f36705SMichael Lange 13449566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 13459566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel), &newParentSection)); 13469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newParentSection, pStart, pEnd)); 13479566063dSJacob Faibussowitsch PetscCall(PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection)); 13489566063dSJacob Faibussowitsch PetscCall(PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF)); 13499566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsetsParents)); 13509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newParentSection, &newParentSize)); 13519566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(newParentSize, &newParents, newParentSize, &newChildIDs)); 135208633170SToby Isaac if (original) { 135308633170SToby Isaac PetscInt numParents; 135408633170SToby Isaac 13559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(origParentSection, &numParents)); 13569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numParents, &globParents)); 13579566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents)); 13589371c9d4SSatish Balay } else { 135908633170SToby Isaac globParents = origParents; 136008633170SToby Isaac } 13619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE)); 13629566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents, MPI_REPLACE)); 13631baa6e33SBarry Smith if (original) PetscCall(PetscFree(globParents)); 13649566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE)); 13659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs, MPI_REPLACE)); 13669566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents)); 136776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 13684a54e071SToby Isaac PetscInt p; 13694a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 13704a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 13719371c9d4SSatish Balay if (newParents[p] < 0) { 13729371c9d4SSatish Balay valid = PETSC_FALSE; 13739371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, "Point %" PetscInt_FMT " not in overlap SF\n", p)); 13749371c9d4SSatish Balay } 13754a54e071SToby Isaac } 137628b400f6SJacob Faibussowitsch PetscCheck(valid, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 13774a54e071SToby Isaac } 13789566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-parents_view", &flg)); 1379a6f36705SMichael Lange if (flg) { 13809566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Serial Parent Section: \n")); 13819566063dSJacob Faibussowitsch PetscCall(PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm))); 13829566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Parallel Parent Section: \n")); 13839566063dSJacob Faibussowitsch PetscCall(PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm))); 13849566063dSJacob Faibussowitsch PetscCall(PetscSFView(parentSF, NULL)); 1385a6f36705SMichael Lange } 13869566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmParallel, newParentSection, newParents, newChildIDs)); 13879566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newParentSection)); 13889566063dSJacob Faibussowitsch PetscCall(PetscFree2(newParents, newChildIDs)); 13899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&parentSF)); 1390a6f36705SMichael Lange } 139115078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1392a6f36705SMichael Lange PetscFunctionReturn(0); 1393a6f36705SMichael Lange } 13940df0e737SMichael Lange 13959371c9d4SSatish Balay PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) { 13969852e123SBarry Smith PetscMPIInt rank, size; 13974eca1733SMichael Lange MPI_Comm comm; 13984eca1733SMichael Lange 13994eca1733SMichael Lange PetscFunctionBegin; 14004eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14010c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 14024eca1733SMichael Lange 14034eca1733SMichael Lange /* Create point SF for parallel mesh */ 14049566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeSF, dm, 0, 0, 0)); 14059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 14069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 14079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 14084eca1733SMichael Lange { 14094eca1733SMichael Lange const PetscInt *leaves; 14104eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 14114eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 14124eca1733SMichael Lange PetscInt pStart, pEnd; 14134eca1733SMichael Lange 14149566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dmParallel, &pStart, &pEnd)); 14159566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL)); 14169566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &rowners, numLeaves, &lowners)); 14174eca1733SMichael Lange for (p = 0; p < numRoots; p++) { 14184eca1733SMichael Lange rowners[p].rank = -1; 14194eca1733SMichael Lange rowners[p].index = -1; 14204eca1733SMichael Lange } 14219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE)); 14229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE)); 14234eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14244eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 14254eca1733SMichael Lange lowners[p].rank = rank; 14264eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 14274eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 14284eca1733SMichael Lange lowners[p].rank = -2; 14294eca1733SMichael Lange lowners[p].index = -2; 14304eca1733SMichael Lange } 14314eca1733SMichael Lange } 14324eca1733SMichael Lange for (p = 0; p < numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 14334eca1733SMichael Lange rowners[p].rank = -3; 14344eca1733SMichael Lange rowners[p].index = -3; 14354eca1733SMichael Lange } 14369566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14379566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC)); 14389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE)); 14399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners, MPI_REPLACE)); 14404eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 14411dca8a05SBarry Smith PetscCheck(lowners[p].rank >= 0 && lowners[p].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell partition corrupt: point not claimed"); 14424eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 14434eca1733SMichael Lange } 14449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &ghostPoints)); 14459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGhostPoints, &remotePoints)); 14464eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 14474eca1733SMichael Lange if (lowners[p].rank != rank) { 14484eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 14494eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 14504eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 14514eca1733SMichael Lange ++gp; 14524eca1733SMichael Lange } 14534eca1733SMichael Lange } 14549566063dSJacob Faibussowitsch PetscCall(PetscFree2(rowners, lowners)); 14559566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER)); 14569566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions((dmParallel)->sf)); 14574eca1733SMichael Lange } 14581cf84007SMatthew G. Knepley { 14591cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 14601cf84007SMatthew G. Knepley 14619566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 14629566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(dmParallel, useCone, useClosure)); 14639566063dSJacob Faibussowitsch PetscCall(DMPlexGetAdjacencyUseAnchors(dm, &useAnchors)); 14649566063dSJacob Faibussowitsch PetscCall(DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors)); 14651cf84007SMatthew G. Knepley } 14669566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeSF, dm, 0, 0, 0)); 14674eca1733SMichael Lange PetscFunctionReturn(0); 14684eca1733SMichael Lange } 14694eca1733SMichael Lange 147098ba2d7fSLawrence Mitchell /*@ 147198ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 147298ba2d7fSLawrence Mitchell 147398ba2d7fSLawrence Mitchell Input Parameters: 147498ba2d7fSLawrence Mitchell + dm - The DMPlex object 147598ba2d7fSLawrence Mitchell - flg - Balance the partition? 147698ba2d7fSLawrence Mitchell 147798ba2d7fSLawrence Mitchell Level: intermediate 147898ba2d7fSLawrence Mitchell 1479db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetPartitionBalance()` 148098ba2d7fSLawrence Mitchell @*/ 14819371c9d4SSatish Balay PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) { 148298ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 148398ba2d7fSLawrence Mitchell 148498ba2d7fSLawrence Mitchell PetscFunctionBegin; 148598ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 148698ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 148798ba2d7fSLawrence Mitchell } 148898ba2d7fSLawrence Mitchell 148998ba2d7fSLawrence Mitchell /*@ 149098ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 149198ba2d7fSLawrence Mitchell 149298ba2d7fSLawrence Mitchell Input Parameter: 1493a2b725a8SWilliam Gropp . dm - The DMPlex object 149498ba2d7fSLawrence Mitchell 149598ba2d7fSLawrence Mitchell Output Parameter: 1496a2b725a8SWilliam Gropp . flg - Balance the partition? 149798ba2d7fSLawrence Mitchell 149898ba2d7fSLawrence Mitchell Level: intermediate 149998ba2d7fSLawrence Mitchell 1500db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexSetPartitionBalance()` 150198ba2d7fSLawrence Mitchell @*/ 15029371c9d4SSatish Balay PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) { 150398ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 150498ba2d7fSLawrence Mitchell 150598ba2d7fSLawrence Mitchell PetscFunctionBegin; 150698ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1507534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 150898ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 150998ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 151098ba2d7fSLawrence Mitchell } 151198ba2d7fSLawrence Mitchell 1512fc02256fSLawrence Mitchell typedef struct { 1513fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1514fc02256fSLawrence Mitchell } Petsc3Int; 1515fc02256fSLawrence Mitchell 1516fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 15179371c9d4SSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) { 1518fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1519fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1520fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1521fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1522fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1523fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1524fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1525fc02256fSLawrence Mitchell a[i].index = b[i].index; 1526fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1527fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1528fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1529fc02256fSLawrence Mitchell a[i].index = b[i].index; 1530fc02256fSLawrence Mitchell } 1531fc02256fSLawrence Mitchell } 1532fc02256fSLawrence Mitchell } 1533fc02256fSLawrence Mitchell } 1534fc02256fSLawrence Mitchell 1535f5bf2dbfSMichael Lange /*@C 1536a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1537f5bf2dbfSMichael Lange 1538064ec1f3Sprj- Input Parameters: 1539f5bf2dbfSMichael Lange + dm - The source DMPlex object 1540f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 1541d8d19677SJose E. Roman - ownership - Flag causing a vote to determine point ownership 1542f5bf2dbfSMichael Lange 1543f5bf2dbfSMichael Lange Output Parameter: 1544d8d19677SJose E. Roman . pointSF - The star forest describing the point overlap in the remapped DM 1545f5bf2dbfSMichael Lange 15463618482eSVaclav Hapla Notes: 15473618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 15483618482eSVaclav Hapla 1549f5bf2dbfSMichael Lange Level: developer 1550f5bf2dbfSMichael Lange 1551db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 1552f5bf2dbfSMichael Lange @*/ 15539371c9d4SSatish Balay PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) { 155423193802SMatthew G. Knepley PetscMPIInt rank, size; 15551627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1556f5bf2dbfSMichael Lange PetscInt *pointLocal; 1557f5bf2dbfSMichael Lange const PetscInt *leaves; 1558f5bf2dbfSMichael Lange const PetscSFNode *roots; 1559f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 156023193802SMatthew G. Knepley Vec shifts; 1561cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 156223193802SMatthew G. Knepley const PetscScalar *shift = NULL; 156323193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 156498ba2d7fSLawrence Mitchell PetscBool balance; 1565f5bf2dbfSMichael Lange 1566f5bf2dbfSMichael Lange PetscFunctionBegin; 1567f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 15699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 15709566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_CreatePointSF, dm, 0, 0, 0)); 1571f5bf2dbfSMichael Lange 15729566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 15739566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots)); 15749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes)); 1575f5bf2dbfSMichael Lange if (ownership) { 1576fc02256fSLawrence Mitchell MPI_Op op; 1577fc02256fSLawrence Mitchell MPI_Datatype datatype; 1578fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 157923193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 158098ba2d7fSLawrence Mitchell if (balance) { 158123193802SMatthew G. Knepley PetscRandom r; 158223193802SMatthew G. Knepley 15839566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PETSC_COMM_SELF, &r)); 15849566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(r, 0, 2467 * size)); 15859566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &shifts)); 15869566063dSJacob Faibussowitsch PetscCall(VecSetSizes(shifts, numShifts, numShifts)); 15879566063dSJacob Faibussowitsch PetscCall(VecSetType(shifts, VECSTANDARD)); 15889566063dSJacob Faibussowitsch PetscCall(VecSetRandom(shifts, r)); 15899566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&r)); 15909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(shifts, &shift)); 159123193802SMatthew G. Knepley } 159223193802SMatthew G. Knepley 15939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &rootVote)); 15949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &leafVote)); 159523193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1596f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 159723193802SMatthew G. Knepley if (shiftDebug) { 15989371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(PetscObjectComm((PetscObject)dm), "[%d] Point %" PetscInt_FMT " RemotePoint %" PetscInt_FMT " Shift %" PetscInt_FMT " MyRank %" PetscInt_FMT "\n", rank, leaves ? leaves[p] : p, roots[p].index, 15999371c9d4SSatish Balay (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]), (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size)); 160023193802SMatthew G. Knepley } 1601f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1602fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt)PetscRealPart(shift[roots[p].index % numShifts]) : 0)) % size; 1603fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1604fc02256fSLawrence Mitchell leafVote[p].index = p; 1605f5bf2dbfSMichael Lange } 1606f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 16071627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1608fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1609fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1610fc02256fSLawrence Mitchell rootVote[p].index = -3; 1611f5bf2dbfSMichael Lange } 16129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_contiguous(3, MPIU_INT, &datatype)); 16139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&datatype)); 16149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_create(&MaxLocCarry, 1, &op)); 16159566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op)); 16169566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op)); 16179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Op_free(&op)); 16189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&datatype)); 1619c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1620fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1621fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1622c091126eSLawrence Mitchell } 16239566063dSJacob Faibussowitsch PetscCall(PetscFree(leafVote)); 16249566063dSJacob Faibussowitsch PetscCall(PetscFree(rootVote)); 1625f5bf2dbfSMichael Lange } else { 1626f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1627f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1628f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1629fc02256fSLawrence Mitchell } 1630f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1631f5bf2dbfSMichael Lange /* Write new local id into old location */ 1632ad540459SPierre Jolivet if (roots[p].rank == rank) rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1633f5bf2dbfSMichael Lange } 1634f5bf2dbfSMichael Lange } 16359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE)); 16369566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes, MPI_REPLACE)); 1637f5bf2dbfSMichael Lange 163823193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1639b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 164023193802SMatthew G. Knepley } 16419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointLocal)); 16429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npointLeaves, &pointRemote)); 1643f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1644b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 16453618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1646f5bf2dbfSMichael Lange pointLocal[idx] = p; 1647f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1648f5bf2dbfSMichael Lange idx++; 1649f5bf2dbfSMichael Lange } 1650f5bf2dbfSMichael Lange } 165123193802SMatthew G. Knepley if (shift) { 16529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(shifts, &shift)); 16539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&shifts)); 165423193802SMatthew G. Knepley } 16559566063dSJacob Faibussowitsch if (shiftDebug) PetscCall(PetscSynchronizedFlush(PetscObjectComm((PetscObject)dm), PETSC_STDOUT)); 16569566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), pointSF)); 16579566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*pointSF)); 16589566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER)); 16599566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootNodes, leafNodes)); 16609566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_CreatePointSF, dm, 0, 0, 0)); 16616c1ef331SVaclav Hapla if (PetscDefined(USE_DEBUG)) PetscCall(DMPlexCheckPointSF(dm, *pointSF)); 1662f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1663f5bf2dbfSMichael Lange } 1664f5bf2dbfSMichael Lange 166515078cd4SMichael Lange /*@C 166615078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 166715078cd4SMichael Lange 1668d083f849SBarry Smith Collective on dm 166983655b49SVáclav Hapla 1670064ec1f3Sprj- Input Parameters: 167115078cd4SMichael Lange + dm - The source DMPlex object 1672d8d19677SJose E. Roman - sf - The star forest communication context describing the migration pattern 167315078cd4SMichael Lange 167415078cd4SMichael Lange Output Parameter: 1675d8d19677SJose E. Roman . targetDM - The target DMPlex object 167615078cd4SMichael Lange 1677b9f40539SMichael Lange Level: intermediate 167815078cd4SMichael Lange 1679db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexDistributeOverlap()` 168015078cd4SMichael Lange @*/ 16819371c9d4SSatish Balay PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) { 1682b9f40539SMichael Lange MPI_Comm comm; 1683cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1684b9f40539SMichael Lange PetscSF sfPoint; 168515078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1686ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 168715078cd4SMichael Lange 168815078cd4SMichael Lange PetscFunctionBegin; 168915078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0)); 16919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 16929566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16939566063dSJacob Faibussowitsch PetscCall(DMSetDimension(targetDM, dim)); 16949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 16959566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(targetDM, cdim)); 169615078cd4SMichael Lange 1697bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 16989566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 16999566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 1700bfb0467fSMichael Lange if (nroots >= 0) { 1701b9f40539SMichael Lange IS isOriginal; 1702ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1703ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1704367003a6SStefano Zampini 1705b9f40539SMichael Lange /* Get the original point numbering */ 17069566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointNumbering(dm, &isOriginal)); 17079566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal)); 17089566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetSize(ltogOriginal, &size)); 17099566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt **)&numbering_orig)); 1710b9f40539SMichael Lange /* Convert to positive global numbers */ 17119371c9d4SSatish Balay for (n = 0; n < size; n++) { 17129371c9d4SSatish Balay if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n] + 1); 17139371c9d4SSatish Balay } 1714b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 17159566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL)); 17169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &numbering_new)); 17179566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE)); 17189566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new, MPI_REPLACE)); 17199566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration)); 17209566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt **)&numbering_orig)); 17219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isOriginal)); 172215078cd4SMichael Lange } else { 1723bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 17249566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration)); 172515078cd4SMichael Lange } 1726a5a902f7SVaclav Hapla PetscCall(PetscObjectSetName((PetscObject)ltogMigration, "Point renumbering for DM migration")); 1727a5a902f7SVaclav Hapla PetscCall(ISLocalToGlobalMappingViewFromOptions(ltogMigration, (PetscObject)dm, "-partition_view")); 172815078cd4SMichael Lange /* Migrate DM data to target DM */ 17299566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17309566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeLabels(dm, sf, targetDM)); 17319566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeCoordinates(dm, sf, targetDM)); 17329566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM)); 17339566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogOriginal)); 17349566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(<ogMigration)); 17359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0)); 173615078cd4SMichael Lange PetscFunctionReturn(0); 173715078cd4SMichael Lange } 173815078cd4SMichael Lange 17393b8f15a2SMatthew G. Knepley /*@C 174070034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 174170034214SMatthew G. Knepley 1742d083f849SBarry Smith Collective on dm 174370034214SMatthew G. Knepley 1744064ec1f3Sprj- Input Parameters: 174570034214SMatthew G. Knepley + dm - The original DMPlex object 174670034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 174770034214SMatthew G. Knepley 1748064ec1f3Sprj- Output Parameters: 1749f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1750f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 175170034214SMatthew G. Knepley 1752f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 175370034214SMatthew G. Knepley 1754b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 175570034214SMatthew G. Knepley representation on the mesh. 175670034214SMatthew G. Knepley 175770034214SMatthew G. Knepley Level: intermediate 175870034214SMatthew G. Knepley 1759db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexGetOverlap()` 176070034214SMatthew G. Knepley @*/ 17619371c9d4SSatish Balay PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) { 176270034214SMatthew G. Knepley MPI_Comm comm; 176315078cd4SMichael Lange PetscPartitioner partitioner; 1764f8987ae8SMichael Lange IS cellPart; 1765f8987ae8SMichael Lange PetscSection cellPartSection; 1766cf86098cSMatthew G. Knepley DM dmCoord; 1767f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1768874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 176998ba2d7fSLawrence Mitchell PetscBool flg, balance; 1770874ddda9SLisandro Dalcin PetscMPIInt rank, size; 177170034214SMatthew G. Knepley 177270034214SMatthew G. Knepley PetscFunctionBegin; 177370034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1774d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1775d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf, 3); 1776d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel, 4); 177770034214SMatthew G. Knepley 17780c86c063SLisandro Dalcin if (sf) *sf = NULL; 17790c86c063SLisandro Dalcin *dmParallel = NULL; 17809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 17819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 17829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17830c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 178470034214SMatthew G. Knepley 17859566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Distribute, dm, 0, 0, 0)); 178615078cd4SMichael Lange /* Create cell partition */ 17879566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0)); 17889566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &cellPartSection)); 17899566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &partitioner)); 17909566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart)); 17919566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_PartSelf, dm, 0, 0, 0)); 1792f8987ae8SMichael Lange { 1793f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1794825f8a23SLisandro Dalcin IS is; 1795825f8a23SLisandro Dalcin PetscHSetI ht; 1796f8987ae8SMichael Lange const PetscInt *points; 17978e330a33SStefano Zampini PetscInt *iranks; 17988e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1799825f8a23SLisandro Dalcin 18009566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition)); 1801825f8a23SLisandro Dalcin /* Preallocate strata */ 18029566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 18039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1804825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 18059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 18069566063dSJacob Faibussowitsch if (npoints) PetscCall(PetscHSetIAdd(ht, proc)); 1807825f8a23SLisandro Dalcin } 18089566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(ht, &nranks)); 18099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nranks, &iranks)); 18109566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetElems(ht, &poff, iranks)); 18119566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 18129566063dSJacob Faibussowitsch PetscCall(DMLabelAddStrata(lblPartition, nranks, iranks)); 18139566063dSJacob Faibussowitsch PetscCall(PetscFree(iranks)); 1814825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 18159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(cellPart, &points)); 18169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellPartSection, &pStart, &pEnd)); 1817f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 18189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellPartSection, proc, &npoints)); 1819825f8a23SLisandro Dalcin if (!npoints) continue; 18209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellPartSection, proc, &poff)); 18219566063dSJacob Faibussowitsch PetscCall(DMPlexClosurePoints_Private(dm, npoints, points + poff, &is)); 18229566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(lblPartition, proc, is)); 18239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 1824f8987ae8SMichael Lange } 18259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(cellPart, &points)); 1826f8987ae8SMichael Lange } 18279566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_PartSelf, dm, 0, 0, 0)); 18286e203dd9SStefano Zampini 18299566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration)); 18309566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration)); 18319566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration)); 18329566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified)); 18339566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 183443f7d02bSMichael Lange sfMigration = sfStratified; 18359566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sfMigration)); 18369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0)); 18379566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-partition_view", &flg)); 183870034214SMatthew G. Knepley if (flg) { 18399566063dSJacob Faibussowitsch PetscCall(DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm))); 18409566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm))); 184170034214SMatthew G. Knepley } 1842f8987ae8SMichael Lange 184315078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 18449566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmParallel)); 18459566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*dmParallel, "Parallel Mesh")); 18469566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfMigration, *dmParallel)); 184770034214SMatthew G. Knepley 1848a157612eSMichael Lange /* Build the point SF without overlap */ 18499566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitionBalance(dm, &balance)); 18509566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitionBalance(*dmParallel, balance)); 18519566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint)); 18529566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmParallel, sfPoint)); 18539566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmParallel, &dmCoord)); 18549566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 18559566063dSJacob Faibussowitsch if (flg) PetscCall(PetscSFView(sfPoint, NULL)); 185670034214SMatthew G. Knepley 1857a157612eSMichael Lange if (overlap > 0) { 185815078cd4SMichael Lange DM dmOverlap; 185957f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 186057f290daSMatthew G. Knepley const PetscInt *oldLeaves; 186157f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 186215078cd4SMichael Lange const PetscSFNode *oldRemote; 186315078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1864524e35f8SStefano Zampini 1865a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 18669566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap)); 18679566063dSJacob Faibussowitsch PetscCall(DMDestroy(dmParallel)); 1868a157612eSMichael Lange *dmParallel = dmOverlap; 1869c389ea9fSToby Isaac if (flg) { 18709566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Overlap Migration SF:\n")); 18719566063dSJacob Faibussowitsch PetscCall(PetscSFView(sfOverlap, NULL)); 1872c389ea9fSToby Isaac } 187343331d4aSMichael Lange 1874f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 18759566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote)); 18769566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL)); 18779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &newRemote)); 187857f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 187957f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 188057f290daSMatthew G. Knepley if (oldLeaves) { 188173e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 18829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(noldleaves, &permRemote)); 188357f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 188457f290daSMatthew G. Knepley oldRemote = permRemote; 188557f290daSMatthew G. Knepley } 18869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE)); 18879566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote, MPI_REPLACE)); 18889566063dSJacob Faibussowitsch if (oldLeaves) PetscCall(PetscFree(oldRemote)); 18899566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sfOverlapPoint)); 18909566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER)); 18919566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 18929566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfMigration)); 189315078cd4SMichael Lange sfMigration = sfOverlapPoint; 1894c389ea9fSToby Isaac } 1895bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 18969566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblPartition)); 18979566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblMigration)); 18989566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&cellPartSection)); 18999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellPart)); 190045480ffeSMatthew G. Knepley /* Copy discretization */ 19019566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *dmParallel)); 190266fe0bfeSMatthew G. Knepley /* Create sfNatural */ 190366fe0bfeSMatthew G. Knepley if (dm->useNatural) { 190466fe0bfeSMatthew G. Knepley PetscSection section; 190566fe0bfeSMatthew G. Knepley 1906fc6a3818SBlaise Bourdin PetscCall(DMSetUseNatural(*dmParallel, PETSC_TRUE)); 1907fc6a3818SBlaise Bourdin PetscCall(DMGetLocalSection(dm, §ion)); 1908fc6a3818SBlaise Bourdin 19098aee0f92SAlexis Marboeuf /* First DM with useNatural = PETSC_TRUE is considered natural */ 19108aee0f92SAlexis Marboeuf /* sfMigration and sfNatural are respectively the point and dofs SFs mapping to this natural DM */ 1911fc6a3818SBlaise Bourdin /* Compose with a previous sfNatural if present */ 1912fc6a3818SBlaise Bourdin if (dm->sfNatural) { 1913fc6a3818SBlaise Bourdin PetscSF natSF; 1914fc6a3818SBlaise Bourdin 1915fc6a3818SBlaise Bourdin PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &natSF)); 1916fc6a3818SBlaise Bourdin PetscCall(PetscSFCompose(dm->sfNatural, natSF, &(*dmParallel)->sfNatural)); 1917fc6a3818SBlaise Bourdin PetscCall(PetscSFDestroy(&natSF)); 1918fc6a3818SBlaise Bourdin } else { 1919fc6a3818SBlaise Bourdin PetscCall(DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural)); 1920fc6a3818SBlaise Bourdin } 19218aee0f92SAlexis Marboeuf /* Compose with a previous sfMigration if present */ 19228aee0f92SAlexis Marboeuf if (dm->sfMigration) { 19238aee0f92SAlexis Marboeuf PetscSF naturalPointSF; 19248aee0f92SAlexis Marboeuf 19258aee0f92SAlexis Marboeuf PetscCall(PetscSFCompose(dm->sfMigration, sfMigration, &naturalPointSF)); 19268aee0f92SAlexis Marboeuf PetscCall(PetscSFDestroy(&sfMigration)); 19278aee0f92SAlexis Marboeuf sfMigration = naturalPointSF; 19288aee0f92SAlexis Marboeuf } 192966fe0bfeSMatthew G. Knepley } 19305de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *dmParallel)); 1931721cbd76SMatthew G. Knepley /* Cleanup */ 19329371c9d4SSatish Balay if (sf) { 19339371c9d4SSatish Balay *sf = sfMigration; 19349371c9d4SSatish Balay } else PetscCall(PetscSFDestroy(&sfMigration)); 19359566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 19369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Distribute, dm, 0, 0, 0)); 193770034214SMatthew G. Knepley PetscFunctionReturn(0); 193870034214SMatthew G. Knepley } 1939a157612eSMichael Lange 1940a157612eSMichael Lange /*@C 194124cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1942a157612eSMichael Lange 1943d083f849SBarry Smith Collective on dm 1944a157612eSMichael Lange 1945064ec1f3Sprj- Input Parameters: 1946064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 194757fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1948a157612eSMichael Lange 1949064ec1f3Sprj- Output Parameters: 1950a157612eSMichael Lange + sf - The PetscSF used for point distribution 1951a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1952a157612eSMichael Lange 1953dccdeccaSVaclav Hapla Notes: 1954dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1955a157612eSMichael Lange 1956b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1957a157612eSMichael Lange representation on the mesh. 1958a157612eSMichael Lange 1959c506a872SMatthew G. Knepley Options Database Keys: 1960c506a872SMatthew G. Knepley + -dm_plex_overlap_labels <name1,name2,...> - List of overlap label names 1961c506a872SMatthew G. Knepley . -dm_plex_overlap_values <int1,int2,...> - List of overlap label values 1962c506a872SMatthew G. Knepley . -dm_plex_overlap_exclude_label <name> - Label used to exclude points from overlap 1963c506a872SMatthew G. Knepley - -dm_plex_overlap_exclude_value <int> - Label value used to exclude points from overlap 1964c506a872SMatthew G. Knepley 1965dccdeccaSVaclav Hapla Level: advanced 1966a157612eSMichael Lange 1967db781477SPatrick Sanan .seealso: `DMPlexCreate()`, `DMSetAdjacency()`, `DMPlexDistribute()`, `DMPlexCreateOverlapLabel()`, `DMPlexGetOverlap()` 1968a157612eSMichael Lange @*/ 19699371c9d4SSatish Balay PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) { 1970c506a872SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 1971a157612eSMichael Lange MPI_Comm comm; 19723567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1973a157612eSMichael Lange PetscSection rootSection, leafSection; 1974a157612eSMichael Lange IS rootrank, leafrank; 1975cf86098cSMatthew G. Knepley DM dmCoord; 1976a9f1d5b2SMichael Lange DMLabel lblOverlap; 1977f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1978a157612eSMichael Lange 1979a157612eSMichael Lange PetscFunctionBegin; 1980a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 198157fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1982a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1983a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1984a157612eSMichael Lange 19850c86c063SLisandro Dalcin if (sf) *sf = NULL; 19860c86c063SLisandro Dalcin *dmOverlap = NULL; 19879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 19889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 19899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19900c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1991c506a872SMatthew G. Knepley { 1992c506a872SMatthew G. Knepley // We need to get options for the _already_distributed mesh, so it must be done here 1993c506a872SMatthew G. Knepley PetscInt overlap; 1994c506a872SMatthew G. Knepley const char *prefix; 1995c506a872SMatthew G. Knepley char oldPrefix[PETSC_MAX_PATH_LEN]; 1996a157612eSMichael Lange 1997c506a872SMatthew G. Knepley oldPrefix[0] = '\0'; 1998c506a872SMatthew G. Knepley PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 1999c506a872SMatthew G. Knepley PetscCall(PetscStrcpy(oldPrefix, prefix)); 2000c506a872SMatthew G. Knepley PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, "dist_")); 2001c506a872SMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 2002c506a872SMatthew G. Knepley PetscObjectOptionsBegin((PetscObject)dm); 2003dbbe0bcdSBarry Smith PetscCall(DMSetFromOptions_Overlap_Plex(dm, PetscOptionsObject, &overlap)); 2004c506a872SMatthew G. Knepley PetscOptionsEnd(); 2005c506a872SMatthew G. Knepley PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, oldPrefix[0] == '\0' ? NULL : oldPrefix)); 2006c506a872SMatthew G. Knepley } 20079566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 2008a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 20099566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_Partition, dm, 0, 0, 0)); 20109566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &rootSection)); 20119566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &leafSection)); 20129566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank)); 2013c506a872SMatthew G. Knepley if (mesh->numOvLabels) PetscCall(DMPlexCreateOverlapLabelFromLabels(dm, mesh->numOvLabels, mesh->ovLabels, mesh->ovValues, mesh->numOvExLabels, mesh->ovExLabels, mesh->ovExValues, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 2014c506a872SMatthew G. Knepley else PetscCall(DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap)); 2015a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 20169566063dSJacob Faibussowitsch PetscCall(DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap)); 20179566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified)); 20189566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfOverlap)); 2019a9f1d5b2SMichael Lange sfOverlap = sfStratified; 20209566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)sfOverlap, "Overlap SF")); 20219566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sfOverlap)); 2022a9f1d5b2SMichael Lange 20239566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&rootSection)); 20249566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&leafSection)); 20259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rootrank)); 20269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&leafrank)); 20279566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_Partition, dm, 0, 0, 0)); 2028a157612eSMichael Lange 2029a157612eSMichael Lange /* Build the overlapping DM */ 20309566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, dmOverlap)); 20319566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*dmOverlap, "Parallel Mesh")); 20329566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(dm, sfOverlap, *dmOverlap)); 2033cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 203460667520SVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*dmOverlap, dm, overlap)); 2035f5bf2dbfSMichael Lange /* Build the new point SF */ 20369566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint)); 20379566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*dmOverlap, sfPoint)); 20389566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmOverlap, &dmCoord)); 20399566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 20406858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinateDM(*dmOverlap, &dmCoord)); 20416858538eSMatthew G. Knepley if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 20429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2043a157612eSMichael Lange /* Cleanup overlap partition */ 20449566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblOverlap)); 2045a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 20469566063dSJacob Faibussowitsch else PetscCall(PetscSFDestroy(&sfOverlap)); 20479566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0)); 2048a157612eSMichael Lange PetscFunctionReturn(0); 2049a157612eSMichael Lange } 20506462276dSToby Isaac 20519371c9d4SSatish Balay PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) { 2052cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex *)dm->data; 2053cb54e036SVaclav Hapla 2054cb54e036SVaclav Hapla PetscFunctionBegin; 2055cb54e036SVaclav Hapla *overlap = mesh->overlap; 2056cb54e036SVaclav Hapla PetscFunctionReturn(0); 2057cb54e036SVaclav Hapla } 2058cb54e036SVaclav Hapla 20599371c9d4SSatish Balay PetscErrorCode DMPlexSetOverlap_Plex(DM dm, DM dmSrc, PetscInt overlap) { 206060667520SVaclav Hapla DM_Plex *mesh = NULL; 206160667520SVaclav Hapla DM_Plex *meshSrc = NULL; 206260667520SVaclav Hapla 206360667520SVaclav Hapla PetscFunctionBegin; 206460667520SVaclav Hapla PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 206560667520SVaclav Hapla mesh = (DM_Plex *)dm->data; 206660667520SVaclav Hapla mesh->overlap = overlap; 206760667520SVaclav Hapla if (dmSrc) { 206860667520SVaclav Hapla PetscValidHeaderSpecificType(dmSrc, DM_CLASSID, 2, DMPLEX); 206960667520SVaclav Hapla meshSrc = (DM_Plex *)dmSrc->data; 207060667520SVaclav Hapla mesh->overlap += meshSrc->overlap; 207160667520SVaclav Hapla } 207260667520SVaclav Hapla PetscFunctionReturn(0); 207360667520SVaclav Hapla } 207460667520SVaclav Hapla 2075cb54e036SVaclav Hapla /*@ 2076c506a872SMatthew G. Knepley DMPlexGetOverlap - Get the width of the cell overlap 2077cb54e036SVaclav Hapla 2078cb54e036SVaclav Hapla Not collective 2079cb54e036SVaclav Hapla 2080cb54e036SVaclav Hapla Input Parameter: 2081cb54e036SVaclav Hapla . dm - The DM 2082cb54e036SVaclav Hapla 2083064ec1f3Sprj- Output Parameter: 2084c506a872SMatthew G. Knepley . overlap - the width of the cell overlap 2085cb54e036SVaclav Hapla 2086cb54e036SVaclav Hapla Level: intermediate 2087cb54e036SVaclav Hapla 2088c506a872SMatthew G. Knepley .seealso: `DMPlexSetOverlap()`, `DMPlexDistribute()` 2089cb54e036SVaclav Hapla @*/ 20909371c9d4SSatish Balay PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) { 2091cb54e036SVaclav Hapla PetscFunctionBegin; 2092cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2093c506a872SMatthew G. Knepley PetscValidIntPointer(overlap, 2); 2094cac4c232SBarry Smith PetscUseMethod(dm, "DMPlexGetOverlap_C", (DM, PetscInt *), (dm, overlap)); 2095cb54e036SVaclav Hapla PetscFunctionReturn(0); 2096cb54e036SVaclav Hapla } 2097cb54e036SVaclav Hapla 2098c506a872SMatthew G. Knepley /*@ 2099c506a872SMatthew G. Knepley DMPlexSetOverlap - Set the width of the cell overlap 2100c506a872SMatthew G. Knepley 2101c506a872SMatthew G. Knepley Logically collective 2102c506a872SMatthew G. Knepley 2103c506a872SMatthew G. Knepley Input Parameters: 2104c506a872SMatthew G. Knepley + dm - The DM 2105c506a872SMatthew G. Knepley . dmSrc - The DM that produced this one, or NULL 2106c506a872SMatthew G. Knepley - overlap - the width of the cell overlap 2107c506a872SMatthew G. Knepley 2108c506a872SMatthew G. Knepley Note: 2109c506a872SMatthew G. Knepley The overlap from dmSrc is added to dm 2110c506a872SMatthew G. Knepley 2111c506a872SMatthew G. Knepley Level: intermediate 2112c506a872SMatthew G. Knepley 2113c506a872SMatthew G. Knepley .seealso: `DMPlexGetOverlap()`, `DMPlexDistribute()` 2114c506a872SMatthew G. Knepley @*/ 21159371c9d4SSatish Balay PetscErrorCode DMPlexSetOverlap(DM dm, DM dmSrc, PetscInt overlap) { 2116c506a872SMatthew G. Knepley PetscFunctionBegin; 2117c506a872SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2118c506a872SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 3); 2119c506a872SMatthew G. Knepley PetscTryMethod(dm, "DMPlexSetOverlap_C", (DM, DM, PetscInt), (dm, dmSrc, overlap)); 2120c506a872SMatthew G. Knepley PetscFunctionReturn(0); 2121c506a872SMatthew G. Knepley } 2122c506a872SMatthew G. Knepley 21239371c9d4SSatish Balay PetscErrorCode DMPlexDistributeSetDefault_Plex(DM dm, PetscBool dist) { 2124e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2125e600fa54SMatthew G. Knepley 2126e600fa54SMatthew G. Knepley PetscFunctionBegin; 2127e600fa54SMatthew G. Knepley mesh->distDefault = dist; 2128e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2129e600fa54SMatthew G. Knepley } 2130e600fa54SMatthew G. Knepley 2131e600fa54SMatthew G. Knepley /*@ 2132e600fa54SMatthew G. Knepley DMPlexDistributeSetDefault - Set flag indicating whether the DM should be distributed by default 2133e600fa54SMatthew G. Knepley 2134e600fa54SMatthew G. Knepley Logically collective 2135e600fa54SMatthew G. Knepley 2136e600fa54SMatthew G. Knepley Input Parameters: 2137e600fa54SMatthew G. Knepley + dm - The DM 2138e600fa54SMatthew G. Knepley - dist - Flag for distribution 2139e600fa54SMatthew G. Knepley 2140e600fa54SMatthew G. Knepley Level: intermediate 2141e600fa54SMatthew G. Knepley 21429e70506fSSatish Balay .seealso: `DMPlexDistributeGetDefault()`, `DMPlexDistribute()` 2143e600fa54SMatthew G. Knepley @*/ 21449371c9d4SSatish Balay PetscErrorCode DMPlexDistributeSetDefault(DM dm, PetscBool dist) { 2145e600fa54SMatthew G. Knepley PetscFunctionBegin; 2146e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2147e600fa54SMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, dist, 2); 2148cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexDistributeSetDefault_C", (DM, PetscBool), (dm, dist)); 2149e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2150e600fa54SMatthew G. Knepley } 2151e600fa54SMatthew G. Knepley 21529371c9d4SSatish Balay PetscErrorCode DMPlexDistributeGetDefault_Plex(DM dm, PetscBool *dist) { 2153e600fa54SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2154e600fa54SMatthew G. Knepley 2155e600fa54SMatthew G. Knepley PetscFunctionBegin; 2156e600fa54SMatthew G. Knepley *dist = mesh->distDefault; 2157e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2158e600fa54SMatthew G. Knepley } 2159e600fa54SMatthew G. Knepley 2160e600fa54SMatthew G. Knepley /*@ 2161e600fa54SMatthew G. Knepley DMPlexDistributeGetDefault - Get flag indicating whether the DM should be distributed by default 2162e600fa54SMatthew G. Knepley 2163e600fa54SMatthew G. Knepley Not collective 2164e600fa54SMatthew G. Knepley 2165e600fa54SMatthew G. Knepley Input Parameter: 2166e600fa54SMatthew G. Knepley . dm - The DM 2167e600fa54SMatthew G. Knepley 2168e600fa54SMatthew G. Knepley Output Parameter: 2169e600fa54SMatthew G. Knepley . dist - Flag for distribution 2170e600fa54SMatthew G. Knepley 2171e600fa54SMatthew G. Knepley Level: intermediate 2172e600fa54SMatthew G. Knepley 21739e70506fSSatish Balay .seealso: `DMPlexDistributeSetDefault()`, `DMPlexDistribute()` 2174e600fa54SMatthew G. Knepley @*/ 21759371c9d4SSatish Balay PetscErrorCode DMPlexDistributeGetDefault(DM dm, PetscBool *dist) { 2176e600fa54SMatthew G. Knepley PetscFunctionBegin; 2177e600fa54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2178e600fa54SMatthew G. Knepley PetscValidBoolPointer(dist, 2); 2179cac4c232SBarry Smith PetscUseMethod(dm, "DMPlexDistributeGetDefault_C", (DM, PetscBool *), (dm, dist)); 2180e600fa54SMatthew G. Knepley PetscFunctionReturn(0); 2181e600fa54SMatthew G. Knepley } 2182e600fa54SMatthew G. Knepley 21836462276dSToby Isaac /*@C 21846462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 21856462276dSToby Isaac root process of the original's communicator. 21866462276dSToby Isaac 2187d083f849SBarry Smith Collective on dm 218883655b49SVáclav Hapla 2189064ec1f3Sprj- Input Parameter: 21906462276dSToby Isaac . dm - the original DMPlex object 21916462276dSToby Isaac 21926462276dSToby Isaac Output Parameters: 2193a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2194a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 21956462276dSToby Isaac 21966462276dSToby Isaac Level: intermediate 21976462276dSToby Isaac 2198db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetRedundantDM()` 21996462276dSToby Isaac @*/ 22009371c9d4SSatish Balay PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) { 22016462276dSToby Isaac MPI_Comm comm; 22026462276dSToby Isaac PetscMPIInt size; 22036462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 22046462276dSToby Isaac 22056462276dSToby Isaac PetscFunctionBegin; 22066462276dSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2207064a246eSJacob Faibussowitsch PetscValidPointer(gatherMesh, 3); 22080c86c063SLisandro Dalcin *gatherMesh = NULL; 2209a13df41bSStefano Zampini if (sf) *sf = NULL; 22106462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 22119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 22126462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 22139566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(dm, &oldPart)); 22149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)oldPart)); 22159566063dSJacob Faibussowitsch PetscCall(PetscPartitionerCreate(comm, &gatherPart)); 22169566063dSJacob Faibussowitsch PetscCall(PetscPartitionerSetType(gatherPart, PETSCPARTITIONERGATHER)); 22179566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm, gatherPart)); 22189566063dSJacob Faibussowitsch PetscCall(DMPlexDistribute(dm, 0, sf, gatherMesh)); 2219a13df41bSStefano Zampini 22209566063dSJacob Faibussowitsch PetscCall(DMPlexSetPartitioner(dm, oldPart)); 22219566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&gatherPart)); 22229566063dSJacob Faibussowitsch PetscCall(PetscPartitionerDestroy(&oldPart)); 22236462276dSToby Isaac PetscFunctionReturn(0); 22246462276dSToby Isaac } 22256462276dSToby Isaac 22266462276dSToby Isaac /*@C 22276462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 22286462276dSToby Isaac 2229d083f849SBarry Smith Collective on dm 223083655b49SVáclav Hapla 2231064ec1f3Sprj- Input Parameter: 22326462276dSToby Isaac . dm - the original DMPlex object 22336462276dSToby Isaac 22346462276dSToby Isaac Output Parameters: 2235a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 2236a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 22376462276dSToby Isaac 22386462276dSToby Isaac Level: intermediate 22396462276dSToby Isaac 2240db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetGatherDM()` 22416462276dSToby Isaac @*/ 22429371c9d4SSatish Balay PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) { 22436462276dSToby Isaac MPI_Comm comm; 22446462276dSToby Isaac PetscMPIInt size, rank; 22456462276dSToby Isaac PetscInt pStart, pEnd, p; 22466462276dSToby Isaac PetscInt numPoints = -1; 2247a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 22486462276dSToby Isaac DM gatherDM, dmCoord; 22496462276dSToby Isaac PetscSFNode *points; 22506462276dSToby Isaac 22516462276dSToby Isaac PetscFunctionBegin; 22526462276dSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2253064a246eSJacob Faibussowitsch PetscValidPointer(redundantMesh, 3); 22540c86c063SLisandro Dalcin *redundantMesh = NULL; 22556462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 22569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 225768dbc166SMatthew G. Knepley if (size == 1) { 22589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 225968dbc166SMatthew G. Knepley *redundantMesh = dm; 2260a13df41bSStefano Zampini if (sf) *sf = NULL; 226168dbc166SMatthew G. Knepley PetscFunctionReturn(0); 226268dbc166SMatthew G. Knepley } 22639566063dSJacob Faibussowitsch PetscCall(DMPlexGetGatherDM(dm, &gatherSF, &gatherDM)); 22646462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 22659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 22669566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(gatherDM, &pStart, &pEnd)); 22676462276dSToby Isaac numPoints = pEnd - pStart; 22689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&numPoints, 1, MPIU_INT, 0, comm)); 22699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints, &points)); 22709566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &migrationSF)); 22716462276dSToby Isaac for (p = 0; p < numPoints; p++) { 22726462276dSToby Isaac points[p].index = p; 22736462276dSToby Isaac points[p].rank = 0; 22746462276dSToby Isaac } 22759566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(migrationSF, pEnd - pStart, numPoints, NULL, PETSC_OWN_POINTER, points, PETSC_OWN_POINTER)); 22769566063dSJacob Faibussowitsch PetscCall(DMPlexCreate(comm, redundantMesh)); 22779566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*redundantMesh, "Redundant Mesh")); 22789566063dSJacob Faibussowitsch PetscCall(DMPlexMigrate(gatherDM, migrationSF, *redundantMesh)); 22792e28cf0cSVaclav Hapla /* This is to express that all point are in overlap */ 22802e28cf0cSVaclav Hapla PetscCall(DMPlexSetOverlap_Plex(*redundantMesh, NULL, PETSC_MAX_INT)); 22819566063dSJacob Faibussowitsch PetscCall(DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint)); 22829566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*redundantMesh, sfPoint)); 22839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*redundantMesh, &dmCoord)); 22849566063dSJacob Faibussowitsch if (dmCoord) PetscCall(DMSetPointSF(dmCoord, sfPoint)); 22859566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sfPoint)); 2286a13df41bSStefano Zampini if (sf) { 2287a13df41bSStefano Zampini PetscSF tsf; 2288a13df41bSStefano Zampini 22899566063dSJacob Faibussowitsch PetscCall(PetscSFCompose(gatherSF, migrationSF, &tsf)); 22909566063dSJacob Faibussowitsch PetscCall(DMPlexStratifyMigrationSF(dm, tsf, sf)); 22919566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tsf)); 2292a13df41bSStefano Zampini } 22939566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&migrationSF)); 22949566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&gatherSF)); 22959566063dSJacob Faibussowitsch PetscCall(DMDestroy(&gatherDM)); 22969566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, *redundantMesh)); 22975de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_FALSE, *redundantMesh)); 22986462276dSToby Isaac PetscFunctionReturn(0); 22996462276dSToby Isaac } 23005fa78c88SVaclav Hapla 23015fa78c88SVaclav Hapla /*@ 23025fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 23035fa78c88SVaclav Hapla 23045fa78c88SVaclav Hapla Collective 23055fa78c88SVaclav Hapla 23065fa78c88SVaclav Hapla Input Parameter: 23075fa78c88SVaclav Hapla . dm - The DM object 23085fa78c88SVaclav Hapla 23095fa78c88SVaclav Hapla Output Parameter: 23105fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 23115fa78c88SVaclav Hapla 23125fa78c88SVaclav Hapla Level: intermediate 23135fa78c88SVaclav Hapla 23145fa78c88SVaclav Hapla Notes: 23155fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 23165fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 23175fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 23185fa78c88SVaclav Hapla 2319db781477SPatrick Sanan .seealso: `DMPlexDistribute()`, `DMPlexGetOverlap()`, `DMPlexIsInterpolated()` 23205fa78c88SVaclav Hapla @*/ 23219371c9d4SSatish Balay PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) { 23225fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 23235fa78c88SVaclav Hapla MPI_Comm comm; 232435d70e31SStefano Zampini PetscMPIInt size; 23255fa78c88SVaclav Hapla 23265fa78c88SVaclav Hapla PetscFunctionBegin; 23275fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2328dadcf809SJacob Faibussowitsch PetscValidBoolPointer(distributed, 2); 23299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 23309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 23319371c9d4SSatish Balay if (size == 1) { 23329371c9d4SSatish Balay *distributed = PETSC_FALSE; 23339371c9d4SSatish Balay PetscFunctionReturn(0); 23349371c9d4SSatish Balay } 23359566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 233635d70e31SStefano Zampini count = (pEnd - pStart) > 0 ? 1 : 0; 23379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm)); 23385fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 23395fa78c88SVaclav Hapla PetscFunctionReturn(0); 23405fa78c88SVaclav Hapla } 23411d1f2f2aSksagiyam 23421d1f2f2aSksagiyam /*@C 23431d1f2f2aSksagiyam DMPlexDistributionSetName - Set the name of the specific parallel distribution 23441d1f2f2aSksagiyam 23451d1f2f2aSksagiyam Input Parameters: 23461d1f2f2aSksagiyam + dm - The DM 23471d1f2f2aSksagiyam - name - The name of the specific parallel distribution 23481d1f2f2aSksagiyam 23491d1f2f2aSksagiyam Note: 23501d1f2f2aSksagiyam If distribution name is set when saving, DMPlexTopologyView() saves the plex's 23511d1f2f2aSksagiyam parallel distribution (i.e., partition, ownership, and local ordering of points) under 23521d1f2f2aSksagiyam this name. Conversely, if distribution name is set when loading, DMPlexTopologyLoad() 23531d1f2f2aSksagiyam loads the parallel distribution stored in file under this name. 23541d1f2f2aSksagiyam 23551d1f2f2aSksagiyam Level: developer 23561d1f2f2aSksagiyam 23571d1f2f2aSksagiyam .seealso: `DMPlexDistributionGetName()`, `DMPlexTopologyView()`, `DMPlexTopologyLoad()` 23581d1f2f2aSksagiyam @*/ 23591d1f2f2aSksagiyam PetscErrorCode DMPlexDistributionSetName(DM dm, const char name[]) { 23601d1f2f2aSksagiyam DM_Plex *mesh = (DM_Plex *)dm->data; 23611d1f2f2aSksagiyam 23621d1f2f2aSksagiyam PetscFunctionBegin; 23631d1f2f2aSksagiyam PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 23641d1f2f2aSksagiyam if (name) PetscValidCharPointer(name, 2); 23651d1f2f2aSksagiyam PetscCall(PetscFree(mesh->distributionName)); 23661d1f2f2aSksagiyam PetscCall(PetscStrallocpy(name, &mesh->distributionName)); 23671d1f2f2aSksagiyam PetscFunctionReturn(0); 23681d1f2f2aSksagiyam } 23691d1f2f2aSksagiyam 23701d1f2f2aSksagiyam /*@C 23711d1f2f2aSksagiyam DMPlexDistributionGetName - Retrieve the name of the specific parallel distribution 23721d1f2f2aSksagiyam 23731d1f2f2aSksagiyam Input Parameter: 23741d1f2f2aSksagiyam . dm - The DM 23751d1f2f2aSksagiyam 23761d1f2f2aSksagiyam Output Parameter: 23771d1f2f2aSksagiyam . name - The name of the specific parallel distribution 23781d1f2f2aSksagiyam 23791d1f2f2aSksagiyam Note: 23801d1f2f2aSksagiyam If distribution name is set when saving, DMPlexTopologyView() saves the plex's 23811d1f2f2aSksagiyam parallel distribution (i.e., partition, ownership, and local ordering of points) under 23821d1f2f2aSksagiyam this name. Conversely, if distribution name is set when loading, DMPlexTopologyLoad() 23831d1f2f2aSksagiyam loads the parallel distribution stored in file under this name. 23841d1f2f2aSksagiyam 23851d1f2f2aSksagiyam Level: developer 23861d1f2f2aSksagiyam 23871d1f2f2aSksagiyam .seealso: `DMPlexDistributionSetName()`, `DMPlexTopologyView()`, `DMPlexTopologyLoad()` 23881d1f2f2aSksagiyam @*/ 23891d1f2f2aSksagiyam PetscErrorCode DMPlexDistributionGetName(DM dm, const char *name[]) { 23901d1f2f2aSksagiyam DM_Plex *mesh = (DM_Plex *)dm->data; 23911d1f2f2aSksagiyam 23921d1f2f2aSksagiyam PetscFunctionBegin; 23931d1f2f2aSksagiyam PetscValidHeaderSpecificType(dm, DM_CLASSID, 1, DMPLEX); 23941d1f2f2aSksagiyam PetscValidPointer(name, 2); 23951d1f2f2aSksagiyam *name = mesh->distributionName; 23961d1f2f2aSksagiyam PetscFunctionReturn(0); 23971d1f2f2aSksagiyam } 2398