1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 370034214SMatthew G. Knepley 43c1f0c11SLawrence Mitchell /*@C 53c1f0c11SLawrence Mitchell DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback 63c1f0c11SLawrence Mitchell 73c1f0c11SLawrence Mitchell Input Parameters: 83c1f0c11SLawrence Mitchell + dm - The DM object 93c1f0c11SLawrence Mitchell . user - The user callback, may be NULL (to clear the callback) 103c1f0c11SLawrence Mitchell - ctx - context for callback evaluation, may be NULL 113c1f0c11SLawrence Mitchell 123c1f0c11SLawrence Mitchell Level: advanced 133c1f0c11SLawrence Mitchell 143c1f0c11SLawrence Mitchell Notes: 153c1f0c11SLawrence Mitchell The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency. 163c1f0c11SLawrence Mitchell 173c1f0c11SLawrence Mitchell Any setting here overrides other configuration of DMPlex adjacency determination. 183c1f0c11SLawrence Mitchell 19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser() 203c1f0c11SLawrence Mitchell @*/ 213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx) 223c1f0c11SLawrence Mitchell { 233c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 243c1f0c11SLawrence Mitchell 253c1f0c11SLawrence Mitchell PetscFunctionBegin; 263c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 273c1f0c11SLawrence Mitchell mesh->useradjacency = user; 283c1f0c11SLawrence Mitchell mesh->useradjacencyctx = ctx; 293c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 303c1f0c11SLawrence Mitchell } 313c1f0c11SLawrence Mitchell 323c1f0c11SLawrence Mitchell /*@C 333c1f0c11SLawrence Mitchell DMPlexGetAdjacencyUser - get the user-defined adjacency callback 343c1f0c11SLawrence Mitchell 353c1f0c11SLawrence Mitchell Input Parameter: 363c1f0c11SLawrence Mitchell . dm - The DM object 373c1f0c11SLawrence Mitchell 383c1f0c11SLawrence Mitchell Output Parameters: 393c1f0c11SLawrence Mitchell - user - The user callback 403c1f0c11SLawrence Mitchell - ctx - context for callback evaluation 413c1f0c11SLawrence Mitchell 423c1f0c11SLawrence Mitchell Level: advanced 433c1f0c11SLawrence Mitchell 44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser() 453c1f0c11SLawrence Mitchell @*/ 463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx) 473c1f0c11SLawrence Mitchell { 483c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 493c1f0c11SLawrence Mitchell 503c1f0c11SLawrence Mitchell PetscFunctionBegin; 513c1f0c11SLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 523c1f0c11SLawrence Mitchell if (user) *user = mesh->useradjacency; 533c1f0c11SLawrence Mitchell if (ctx) *ctx = mesh->useradjacencyctx; 543c1f0c11SLawrence Mitchell PetscFunctionReturn(0); 553c1f0c11SLawrence Mitchell } 563c1f0c11SLawrence Mitchell 5770034214SMatthew G. Knepley /*@ 58a17985deSToby Isaac DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints. 598b0b4c70SToby Isaac 608b0b4c70SToby Isaac Input Parameters: 618b0b4c70SToby Isaac + dm - The DM object 625b317d89SToby Isaac - useAnchors - Flag to use the constraints. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 638b0b4c70SToby Isaac 648b0b4c70SToby Isaac Level: intermediate 658b0b4c70SToby Isaac 66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 678b0b4c70SToby Isaac @*/ 685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors) 698b0b4c70SToby Isaac { 708b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 718b0b4c70SToby Isaac 728b0b4c70SToby Isaac PetscFunctionBegin; 738b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 745b317d89SToby Isaac mesh->useAnchors = useAnchors; 758b0b4c70SToby Isaac PetscFunctionReturn(0); 768b0b4c70SToby Isaac } 778b0b4c70SToby Isaac 788b0b4c70SToby Isaac /*@ 79a17985deSToby Isaac DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints. 808b0b4c70SToby Isaac 818b0b4c70SToby Isaac Input Parameter: 828b0b4c70SToby Isaac . dm - The DM object 838b0b4c70SToby Isaac 848b0b4c70SToby Isaac Output Parameter: 855b317d89SToby Isaac . useAnchors - Flag to use the closure. If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place. 868b0b4c70SToby Isaac 878b0b4c70SToby Isaac Level: intermediate 888b0b4c70SToby Isaac 89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors() 908b0b4c70SToby Isaac @*/ 915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors) 928b0b4c70SToby Isaac { 938b0b4c70SToby Isaac DM_Plex *mesh = (DM_Plex *) dm->data; 948b0b4c70SToby Isaac 958b0b4c70SToby Isaac PetscFunctionBegin; 968b0b4c70SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 975b317d89SToby Isaac PetscValidIntPointer(useAnchors, 2); 985b317d89SToby Isaac *useAnchors = mesh->useAnchors; 998b0b4c70SToby Isaac PetscFunctionReturn(0); 1008b0b4c70SToby Isaac } 1018b0b4c70SToby Isaac 10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 10370034214SMatthew G. Knepley { 10470034214SMatthew G. Knepley const PetscInt *cone = NULL; 10570034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, coneSize, c; 10670034214SMatthew G. Knepley PetscErrorCode ierr; 10770034214SMatthew G. Knepley 10870034214SMatthew G. Knepley PetscFunctionBeginHot; 10970034214SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 11070034214SMatthew G. Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 1114b6b44bdSMatthew G. Knepley for (c = 0; c <= coneSize; ++c) { 1124b6b44bdSMatthew G. Knepley const PetscInt point = !c ? p : cone[c-1]; 11370034214SMatthew G. Knepley const PetscInt *support = NULL; 11470034214SMatthew G. Knepley PetscInt supportSize, s, q; 11570034214SMatthew G. Knepley 1164b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 1174b6b44bdSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 11870034214SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 119527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) { 12070034214SMatthew G. Knepley if (support[s] == adj[q]) break; 12170034214SMatthew G. Knepley } 12270034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 12370034214SMatthew G. Knepley } 12470034214SMatthew G. Knepley } 12570034214SMatthew G. Knepley *adjSize = numAdj; 12670034214SMatthew G. Knepley PetscFunctionReturn(0); 12770034214SMatthew G. Knepley } 12870034214SMatthew G. Knepley 12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[]) 13070034214SMatthew G. Knepley { 13170034214SMatthew G. Knepley const PetscInt *support = NULL; 13270034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, supportSize, s; 13370034214SMatthew G. Knepley PetscErrorCode ierr; 13470034214SMatthew G. Knepley 13570034214SMatthew G. Knepley PetscFunctionBeginHot; 13670034214SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 13770034214SMatthew G. Knepley ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 1384b6b44bdSMatthew G. Knepley for (s = 0; s <= supportSize; ++s) { 1394b6b44bdSMatthew G. Knepley const PetscInt point = !s ? p : support[s-1]; 14070034214SMatthew G. Knepley const PetscInt *cone = NULL; 14170034214SMatthew G. Knepley PetscInt coneSize, c, q; 14270034214SMatthew G. Knepley 1434b6b44bdSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1444b6b44bdSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 14570034214SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 146527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) { 14770034214SMatthew G. Knepley if (cone[c] == adj[q]) break; 14870034214SMatthew G. Knepley } 14970034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 15070034214SMatthew G. Knepley } 15170034214SMatthew G. Knepley } 15270034214SMatthew G. Knepley *adjSize = numAdj; 15370034214SMatthew G. Knepley PetscFunctionReturn(0); 15470034214SMatthew G. Knepley } 15570034214SMatthew G. Knepley 15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[]) 15770034214SMatthew G. Knepley { 15870034214SMatthew G. Knepley PetscInt *star = NULL; 15970034214SMatthew G. Knepley PetscInt numAdj = 0, maxAdjSize = *adjSize, starSize, s; 16070034214SMatthew G. Knepley PetscErrorCode ierr; 16170034214SMatthew G. Knepley 16270034214SMatthew G. Knepley PetscFunctionBeginHot; 16370034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 16470034214SMatthew G. Knepley for (s = 0; s < starSize*2; s += 2) { 16570034214SMatthew G. Knepley const PetscInt *closure = NULL; 16670034214SMatthew G. Knepley PetscInt closureSize, c, q; 16770034214SMatthew G. Knepley 16870034214SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 16970034214SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 170527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) { 17170034214SMatthew G. Knepley if (closure[c] == adj[q]) break; 17270034214SMatthew G. Knepley } 17370034214SMatthew G. Knepley if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 17470034214SMatthew G. Knepley } 17570034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr); 17670034214SMatthew G. Knepley } 17770034214SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr); 17870034214SMatthew G. Knepley *adjSize = numAdj; 17970034214SMatthew G. Knepley PetscFunctionReturn(0); 18070034214SMatthew G. Knepley } 18170034214SMatthew G. Knepley 1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[]) 18370034214SMatthew G. Knepley { 18479bad331SMatthew G. Knepley static PetscInt asiz = 0; 1858b0b4c70SToby Isaac PetscInt maxAnchors = 1; 1868b0b4c70SToby Isaac PetscInt aStart = -1, aEnd = -1; 1878b0b4c70SToby Isaac PetscInt maxAdjSize; 1888b0b4c70SToby Isaac PetscSection aSec = NULL; 1898b0b4c70SToby Isaac IS aIS = NULL; 1908b0b4c70SToby Isaac const PetscInt *anchors; 1913c1f0c11SLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 19270034214SMatthew G. Knepley PetscErrorCode ierr; 19370034214SMatthew G. Knepley 19470034214SMatthew G. Knepley PetscFunctionBeginHot; 1955b317d89SToby Isaac if (useAnchors) { 196a17985deSToby Isaac ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr); 1978b0b4c70SToby Isaac if (aSec) { 1988b0b4c70SToby Isaac ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr); 19924c766afSToby Isaac maxAnchors = PetscMax(1,maxAnchors); 2008b0b4c70SToby Isaac ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr); 2018b0b4c70SToby Isaac ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr); 2028b0b4c70SToby Isaac } 2038b0b4c70SToby Isaac } 20479bad331SMatthew G. Knepley if (!*adj) { 20524c766afSToby Isaac PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd; 20679bad331SMatthew G. Knepley 20724c766afSToby Isaac ierr = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr); 20879bad331SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 209412e9a14SMatthew G. Knepley depth = PetscMax(depth, -depth); 21024c766afSToby Isaac ierr = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr); 21124c766afSToby Isaac coneSeries = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1; 21224c766afSToby Isaac supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1; 21324c766afSToby Isaac asiz = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries); 2148b0b4c70SToby Isaac asiz *= maxAnchors; 21524c766afSToby Isaac asiz = PetscMin(asiz,pEnd-pStart); 21679bad331SMatthew G. Knepley ierr = PetscMalloc1(asiz,adj);CHKERRQ(ierr); 21779bad331SMatthew G. Knepley } 21879bad331SMatthew G. Knepley if (*adjSize < 0) *adjSize = asiz; 2198b0b4c70SToby Isaac maxAdjSize = *adjSize; 2203c1f0c11SLawrence Mitchell if (mesh->useradjacency) { 22162f17a49SStefano Zampini ierr = (*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr); 2223c1f0c11SLawrence Mitchell } else if (useTransitiveClosure) { 22379bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr); 22470034214SMatthew G. Knepley } else if (useCone) { 22579bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22670034214SMatthew G. Knepley } else { 22779bad331SMatthew G. Knepley ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr); 22870034214SMatthew G. Knepley } 2295b317d89SToby Isaac if (useAnchors && aSec) { 2308b0b4c70SToby Isaac PetscInt origSize = *adjSize; 2318b0b4c70SToby Isaac PetscInt numAdj = origSize; 2328b0b4c70SToby Isaac PetscInt i = 0, j; 2338b0b4c70SToby Isaac PetscInt *orig = *adj; 2348b0b4c70SToby Isaac 2358b0b4c70SToby Isaac while (i < origSize) { 2368b0b4c70SToby Isaac PetscInt p = orig[i]; 2378b0b4c70SToby Isaac PetscInt aDof = 0; 2388b0b4c70SToby Isaac 2398b0b4c70SToby Isaac if (p >= aStart && p < aEnd) { 2408b0b4c70SToby Isaac ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr); 2418b0b4c70SToby Isaac } 2428b0b4c70SToby Isaac if (aDof) { 2438b0b4c70SToby Isaac PetscInt aOff; 2448b0b4c70SToby Isaac PetscInt s, q; 2458b0b4c70SToby Isaac 2468b0b4c70SToby Isaac for (j = i + 1; j < numAdj; j++) { 2478b0b4c70SToby Isaac orig[j - 1] = orig[j]; 2488b0b4c70SToby Isaac } 2498b0b4c70SToby Isaac origSize--; 2508b0b4c70SToby Isaac numAdj--; 2518b0b4c70SToby Isaac ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr); 2528b0b4c70SToby Isaac for (s = 0; s < aDof; ++s) { 253527e7439SSatish Balay for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) { 2548b0b4c70SToby Isaac if (anchors[aOff+s] == orig[q]) break; 2558b0b4c70SToby Isaac } 2568b0b4c70SToby Isaac if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize); 2578b0b4c70SToby Isaac } 2588b0b4c70SToby Isaac } 2598b0b4c70SToby Isaac else { 2608b0b4c70SToby Isaac i++; 2618b0b4c70SToby Isaac } 2628b0b4c70SToby Isaac } 2638b0b4c70SToby Isaac *adjSize = numAdj; 2648b0b4c70SToby Isaac ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr); 2658b0b4c70SToby Isaac } 26670034214SMatthew G. Knepley PetscFunctionReturn(0); 26770034214SMatthew G. Knepley } 26870034214SMatthew G. Knepley 26970034214SMatthew G. Knepley /*@ 27070034214SMatthew G. Knepley DMPlexGetAdjacency - Return all points adjacent to the given point 27170034214SMatthew G. Knepley 27270034214SMatthew G. Knepley Input Parameters: 27370034214SMatthew G. Knepley + dm - The DM object 27470034214SMatthew G. Knepley . p - The point 27570034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE 27670034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize 27770034214SMatthew G. Knepley 27870034214SMatthew G. Knepley Output Parameters: 27970034214SMatthew G. Knepley + adjSize - The number of adjacent points 28070034214SMatthew G. Knepley - adj - The adjacent points 28170034214SMatthew G. Knepley 28270034214SMatthew G. Knepley Level: advanced 28370034214SMatthew G. Knepley 28495452b02SPatrick Sanan Notes: 28595452b02SPatrick Sanan The user must PetscFree the adj array if it was not passed in. 28670034214SMatthew G. Knepley 287b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator() 28870034214SMatthew G. Knepley @*/ 28970034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[]) 29070034214SMatthew G. Knepley { 2911cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 29270034214SMatthew G. Knepley PetscErrorCode ierr; 29370034214SMatthew G. Knepley 29470034214SMatthew G. Knepley PetscFunctionBeginHot; 29570034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29670034214SMatthew G. Knepley PetscValidPointer(adjSize,3); 29770034214SMatthew G. Knepley PetscValidPointer(adj,4); 298b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 2991cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 3001cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr); 30170034214SMatthew G. Knepley PetscFunctionReturn(0); 30270034214SMatthew G. Knepley } 30308633170SToby Isaac 304b0a623aaSMatthew G. Knepley /*@ 305b0a623aaSMatthew G. Knepley DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity 306b0a623aaSMatthew G. Knepley 307d083f849SBarry Smith Collective on dm 308b0a623aaSMatthew G. Knepley 309b0a623aaSMatthew G. Knepley Input Parameters: 310b0a623aaSMatthew G. Knepley + dm - The DM 311b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity 312b0a623aaSMatthew G. Knepley 313b0a623aaSMatthew G. Knepley Output Parameters: 314b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL 315b0a623aaSMatthew G. Knepley - sfProcess - An SF encoding the two-sided process connectivity, or NULL 316b0a623aaSMatthew G. Knepley 317b0a623aaSMatthew G. Knepley Level: developer 318b0a623aaSMatthew G. Knepley 319b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF() 320b0a623aaSMatthew G. Knepley @*/ 321b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess) 322b0a623aaSMatthew G. Knepley { 323b0a623aaSMatthew G. Knepley const PetscSFNode *remotePoints; 324b0a623aaSMatthew G. Knepley PetscInt *localPointsNew; 325b0a623aaSMatthew G. Knepley PetscSFNode *remotePointsNew; 326b0a623aaSMatthew G. Knepley const PetscInt *nranks; 327b0a623aaSMatthew G. Knepley PetscInt *ranksNew; 328b0a623aaSMatthew G. Knepley PetscBT neighbors; 329b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, numLeaves, l, numNeighbors, n; 3309852e123SBarry Smith PetscMPIInt size, proc, rank; 331b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 332b0a623aaSMatthew G. Knepley 333b0a623aaSMatthew G. Knepley PetscFunctionBegin; 334b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 335b0a623aaSMatthew G. Knepley PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2); 336b0a623aaSMatthew G. Knepley if (processRanks) {PetscValidPointer(processRanks, 3);} 337b0a623aaSMatthew G. Knepley if (sfProcess) {PetscValidPointer(sfProcess, 4);} 338*ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr); 339*ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr); 340b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr); 3419852e123SBarry Smith ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr); 3429852e123SBarry Smith ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr); 343b0a623aaSMatthew G. Knepley /* Compute root-to-leaf process connectivity */ 344b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr); 345b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr); 346b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 347b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 348b0a623aaSMatthew G. Knepley 349b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr); 350b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr); 351302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 352b0a623aaSMatthew G. Knepley } 353b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr); 354b0a623aaSMatthew G. Knepley /* Compute leaf-to-neighbor process connectivity */ 355b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr); 356b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr); 357b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 358b0a623aaSMatthew G. Knepley PetscInt ndof, noff, n; 359b0a623aaSMatthew G. Knepley 360b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr); 361b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr); 362302440fdSBarry Smith for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);} 363b0a623aaSMatthew G. Knepley } 364b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr); 365b0a623aaSMatthew G. Knepley /* Compute leaf-to-root process connectivity */ 366b0a623aaSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);} 367b0a623aaSMatthew G. Knepley /* Calculate edges */ 368b0a623aaSMatthew G. Knepley PetscBTClear(neighbors, rank); 3699852e123SBarry Smith for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;} 370b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr); 371b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr); 372b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr); 3739852e123SBarry Smith for (proc = 0, n = 0; proc < size; ++proc) { 374b0a623aaSMatthew G. Knepley if (PetscBTLookup(neighbors, proc)) { 375b0a623aaSMatthew G. Knepley ranksNew[n] = proc; 376b0a623aaSMatthew G. Knepley localPointsNew[n] = proc; 377b0a623aaSMatthew G. Knepley remotePointsNew[n].index = rank; 378b0a623aaSMatthew G. Knepley remotePointsNew[n].rank = proc; 379b0a623aaSMatthew G. Knepley ++n; 380b0a623aaSMatthew G. Knepley } 381b0a623aaSMatthew G. Knepley } 382b0a623aaSMatthew G. Knepley ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr); 383b0a623aaSMatthew G. Knepley if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);} 384b0a623aaSMatthew G. Knepley else {ierr = PetscFree(ranksNew);CHKERRQ(ierr);} 385b0a623aaSMatthew G. Knepley if (sfProcess) { 386b0a623aaSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr); 387b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr); 388b0a623aaSMatthew G. Knepley ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr); 3899852e123SBarry Smith ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 390b0a623aaSMatthew G. Knepley } 391b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 392b0a623aaSMatthew G. Knepley } 393b0a623aaSMatthew G. Knepley 394b0a623aaSMatthew G. Knepley /*@ 395b0a623aaSMatthew G. Knepley DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF. 396b0a623aaSMatthew G. Knepley 397d083f849SBarry Smith Collective on dm 398b0a623aaSMatthew G. Knepley 399b0a623aaSMatthew G. Knepley Input Parameter: 400b0a623aaSMatthew G. Knepley . dm - The DM 401b0a623aaSMatthew G. Knepley 402b0a623aaSMatthew G. Knepley Output Parameters: 403b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point 404b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 405b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 406b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 407b0a623aaSMatthew G. Knepley 408b0a623aaSMatthew G. Knepley Level: developer 409b0a623aaSMatthew G. Knepley 410dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistribute(), DMPlexDistributeOverlap() 411b0a623aaSMatthew G. Knepley @*/ 412b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank) 413b0a623aaSMatthew G. Knepley { 414b0a623aaSMatthew G. Knepley MPI_Comm comm; 415b0a623aaSMatthew G. Knepley PetscSF sfPoint; 416b0a623aaSMatthew G. Knepley const PetscInt *rootdegree; 417b0a623aaSMatthew G. Knepley PetscInt *myrank, *remoterank; 418b0a623aaSMatthew G. Knepley PetscInt pStart, pEnd, p, nedges; 419b0a623aaSMatthew G. Knepley PetscMPIInt rank; 420b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 421b0a623aaSMatthew G. Knepley 422b0a623aaSMatthew G. Knepley PetscFunctionBegin; 423b0a623aaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 424*ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 425b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 426b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 427b0a623aaSMatthew G. Knepley /* Compute number of leaves for each root */ 428b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr); 429b0a623aaSMatthew G. Knepley ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr); 430b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr); 431b0a623aaSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr); 432b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);} 433b0a623aaSMatthew G. Knepley ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr); 434b0a623aaSMatthew G. Knepley /* Gather rank of each leaf to root */ 435b0a623aaSMatthew G. Knepley ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr); 436b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr); 437b0a623aaSMatthew G. Knepley ierr = PetscMalloc1(nedges, &remoterank);CHKERRQ(ierr); 438b0a623aaSMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank; 439b0a623aaSMatthew G. Knepley ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 440b0a623aaSMatthew G. Knepley ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr); 441b0a623aaSMatthew G. Knepley ierr = PetscFree(myrank);CHKERRQ(ierr); 442b0a623aaSMatthew G. Knepley ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr); 443b0a623aaSMatthew G. Knepley /* Distribute remote ranks to leaves */ 444b0a623aaSMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr); 445b0a623aaSMatthew G. Knepley ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr); 446b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 447b0a623aaSMatthew G. Knepley } 448b0a623aaSMatthew G. Knepley 449278397a0SMatthew G. Knepley /*@C 450dccdeccaSVaclav Hapla DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF. 451b0a623aaSMatthew G. Knepley 452d083f849SBarry Smith Collective on dm 453b0a623aaSMatthew G. Knepley 454b0a623aaSMatthew G. Knepley Input Parameters: 455b0a623aaSMatthew G. Knepley + dm - The DM 45624d039d7SMichael Lange . levels - Number of overlap levels 457b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point 458b0a623aaSMatthew G. Knepley . rootrank - The rank of each edge into the root point 459b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point 460b0a623aaSMatthew G. Knepley - leafrank - The rank of each process sharing a leaf point 461b0a623aaSMatthew G. Knepley 462064ec1f3Sprj- Output Parameter: 463b4ec6ac8SBarry Smith . ovLabel - DMLabel containing remote overlap contributions as point/rank pairings 464b0a623aaSMatthew G. Knepley 465b0a623aaSMatthew G. Knepley Level: developer 466b0a623aaSMatthew G. Knepley 4671fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute() 468b0a623aaSMatthew G. Knepley @*/ 469dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel) 470b0a623aaSMatthew G. Knepley { 471e540f424SMichael Lange MPI_Comm comm; 472b0a623aaSMatthew G. Knepley DMLabel ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */ 473874ddda9SLisandro Dalcin PetscSF sfPoint; 474b0a623aaSMatthew G. Knepley const PetscSFNode *remote; 475b0a623aaSMatthew G. Knepley const PetscInt *local; 4761fd9873aSMichael Lange const PetscInt *nrank, *rrank; 477b0a623aaSMatthew G. Knepley PetscInt *adj = NULL; 4781fd9873aSMichael Lange PetscInt pStart, pEnd, p, sStart, sEnd, nleaves, l; 4799852e123SBarry Smith PetscMPIInt rank, size; 48031bc6364SLisandro Dalcin PetscBool flg; 481b0a623aaSMatthew G. Knepley PetscErrorCode ierr; 482b0a623aaSMatthew G. Knepley 483b0a623aaSMatthew G. Knepley PetscFunctionBegin; 4846ba1a4c7SVaclav Hapla *ovLabel = NULL; 485e540f424SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 486*ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 487*ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 4886ba1a4c7SVaclav Hapla if (size == 1) PetscFunctionReturn(0); 489b0a623aaSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 490b0a623aaSMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 491b0a623aaSMatthew G. Knepley ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr); 492b0a623aaSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr); 493d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr); 494b0a623aaSMatthew G. Knepley /* Handle leaves: shared with the root point */ 495b0a623aaSMatthew G. Knepley for (l = 0; l < nleaves; ++l) { 496b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, a; 497b0a623aaSMatthew G. Knepley 498df20756eSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr); 499b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);} 500b0a623aaSMatthew G. Knepley } 501b0a623aaSMatthew G. Knepley ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr); 502b0a623aaSMatthew G. Knepley ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr); 503b0a623aaSMatthew G. Knepley /* Handle roots */ 504b0a623aaSMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 505b0a623aaSMatthew G. Knepley PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a; 506b0a623aaSMatthew G. Knepley 507b0a623aaSMatthew G. Knepley if ((p >= sStart) && (p < sEnd)) { 508b0a623aaSMatthew G. Knepley /* Some leaves share a root with other leaves on different processes */ 509b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr); 510b0a623aaSMatthew G. Knepley if (neighbors) { 511b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr); 512b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 513b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 514b0a623aaSMatthew G. Knepley const PetscInt remoteRank = nrank[noff+n]; 515b0a623aaSMatthew G. Knepley 516b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 517b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 518b0a623aaSMatthew G. Knepley } 519b0a623aaSMatthew G. Knepley } 520b0a623aaSMatthew G. Knepley } 521b0a623aaSMatthew G. Knepley /* Roots are shared with leaves */ 522b0a623aaSMatthew G. Knepley ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr); 523b0a623aaSMatthew G. Knepley if (!neighbors) continue; 524b0a623aaSMatthew G. Knepley ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr); 525b0a623aaSMatthew G. Knepley ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr); 526b0a623aaSMatthew G. Knepley for (n = 0; n < neighbors; ++n) { 527b0a623aaSMatthew G. Knepley const PetscInt remoteRank = rrank[noff+n]; 528b0a623aaSMatthew G. Knepley 529b0a623aaSMatthew G. Knepley if (remoteRank == rank) continue; 530b0a623aaSMatthew G. Knepley for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);} 531b0a623aaSMatthew G. Knepley } 532b0a623aaSMatthew G. Knepley } 533b0a623aaSMatthew G. Knepley ierr = PetscFree(adj);CHKERRQ(ierr); 534b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr); 535b0a623aaSMatthew G. Knepley ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr); 53624d039d7SMichael Lange /* Add additional overlap levels */ 537be200f8dSMichael Lange for (l = 1; l < levels; l++) { 538be200f8dSMichael Lange /* Propagate point donations over SF to capture remote connections */ 539be200f8dSMichael Lange ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr); 540be200f8dSMichael Lange /* Add next level of point donations to the label */ 541be200f8dSMichael Lange ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr); 542be200f8dSMichael Lange } 54326a7d390SMatthew G. Knepley /* We require the closure in the overlap */ 5445abbe4feSMichael Lange ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr); 545c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr); 546e540f424SMichael Lange if (flg) { 547825f8a23SLisandro Dalcin PetscViewer viewer; 548825f8a23SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr); 549825f8a23SLisandro Dalcin ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr); 550b0a623aaSMatthew G. Knepley } 551874ddda9SLisandro Dalcin /* Invert sender to receiver label */ 552d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr); 553874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr); 554a9f1d5b2SMichael Lange /* Add owned points, except for shared local points */ 555a9f1d5b2SMichael Lange for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);} 556e540f424SMichael Lange for (l = 0; l < nleaves; ++l) { 557a9f1d5b2SMichael Lange ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr); 558a9f1d5b2SMichael Lange ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr); 559e540f424SMichael Lange } 560e540f424SMichael Lange /* Clean up */ 5611fd9873aSMichael Lange ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr); 562b0a623aaSMatthew G. Knepley PetscFunctionReturn(0); 563b0a623aaSMatthew G. Knepley } 56470034214SMatthew G. Knepley 56524cc2ca5SMatthew G. Knepley /*@C 56624cc2ca5SMatthew G. Knepley DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF 56724cc2ca5SMatthew G. Knepley 568d083f849SBarry Smith Collective on dm 56924cc2ca5SMatthew G. Knepley 57024cc2ca5SMatthew G. Knepley Input Parameters: 57124cc2ca5SMatthew G. Knepley + dm - The DM 57224cc2ca5SMatthew G. Knepley - overlapSF - The SF mapping ghost points in overlap to owner points on other processes 57324cc2ca5SMatthew G. Knepley 574064ec1f3Sprj- Output Parameter: 575a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations 57624cc2ca5SMatthew G. Knepley 57724cc2ca5SMatthew G. Knepley Level: developer 57824cc2ca5SMatthew G. Knepley 579dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistributeOverlap(), DMPlexDistribute() 58024cc2ca5SMatthew G. Knepley @*/ 58146f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF) 58246f9b1c3SMichael Lange { 58346f9b1c3SMichael Lange MPI_Comm comm; 5849852e123SBarry Smith PetscMPIInt rank, size; 58546f9b1c3SMichael Lange PetscInt d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints; 58646f9b1c3SMichael Lange PetscInt *pointDepths, *remoteDepths, *ilocal; 58746f9b1c3SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 58846f9b1c3SMichael Lange PetscSFNode *iremote; 58946f9b1c3SMichael Lange PetscSF pointSF; 59046f9b1c3SMichael Lange const PetscInt *sharedLocal; 59146f9b1c3SMichael Lange const PetscSFNode *overlapRemote, *sharedRemote; 59246f9b1c3SMichael Lange PetscErrorCode ierr; 59346f9b1c3SMichael Lange 59446f9b1c3SMichael Lange PetscFunctionBegin; 59546f9b1c3SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 59646f9b1c3SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 597*ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 598*ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 59946f9b1c3SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 60046f9b1c3SMichael Lange 60146f9b1c3SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 60246f9b1c3SMichael Lange ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr); 60346f9b1c3SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 60446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 60546f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 60646f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) pointDepths[p] = d; 60746f9b1c3SMichael Lange } 60846f9b1c3SMichael Lange for (p=0; p<nleaves; p++) remoteDepths[p] = -1; 60946f9b1c3SMichael Lange ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 61046f9b1c3SMichael Lange ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr); 61146f9b1c3SMichael Lange 6122d4ee042Sprj- /* Count received points in each stratum and compute the internal strata shift */ 61346f9b1c3SMichael Lange ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr); 61446f9b1c3SMichael Lange for (d=0; d<dim+1; d++) depthRecv[d]=0; 61546f9b1c3SMichael Lange for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++; 61646f9b1c3SMichael Lange depthShift[dim] = 0; 61746f9b1c3SMichael Lange for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim]; 61846f9b1c3SMichael Lange for (d=1; d<dim; d++) depthShift[d] += depthRecv[0]; 61946f9b1c3SMichael Lange for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1]; 62046f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 62146f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 62246f9b1c3SMichael Lange depthIdx[d] = pStart + depthShift[d]; 62346f9b1c3SMichael Lange } 62446f9b1c3SMichael Lange 62546f9b1c3SMichael Lange /* Form the overlap SF build an SF that describes the full overlap migration SF */ 62646f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 62746f9b1c3SMichael Lange newLeaves = pEnd - pStart + nleaves; 62809b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr); 62909b7985cSMatthew G. Knepley ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr); 63046f9b1c3SMichael Lange /* First map local points to themselves */ 63146f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 63246f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 63346f9b1c3SMichael Lange for (p=pStart; p<pEnd; p++) { 63446f9b1c3SMichael Lange point = p + depthShift[d]; 63546f9b1c3SMichael Lange ilocal[point] = point; 63646f9b1c3SMichael Lange iremote[point].index = p; 63746f9b1c3SMichael Lange iremote[point].rank = rank; 63846f9b1c3SMichael Lange depthIdx[d]++; 63946f9b1c3SMichael Lange } 64046f9b1c3SMichael Lange } 64146f9b1c3SMichael Lange 64246f9b1c3SMichael Lange /* Add in the remote roots for currently shared points */ 64346f9b1c3SMichael Lange ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr); 64446f9b1c3SMichael Lange ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr); 64546f9b1c3SMichael Lange for (d=0; d<dim+1; d++) { 64646f9b1c3SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 64746f9b1c3SMichael Lange for (p=0; p<numSharedPoints; p++) { 64846f9b1c3SMichael Lange if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) { 64946f9b1c3SMichael Lange point = sharedLocal[p] + depthShift[d]; 65046f9b1c3SMichael Lange iremote[point].index = sharedRemote[p].index; 65146f9b1c3SMichael Lange iremote[point].rank = sharedRemote[p].rank; 65246f9b1c3SMichael Lange } 65346f9b1c3SMichael Lange } 65446f9b1c3SMichael Lange } 65546f9b1c3SMichael Lange 65646f9b1c3SMichael Lange /* Now add the incoming overlap points */ 65746f9b1c3SMichael Lange for (p=0; p<nleaves; p++) { 65846f9b1c3SMichael Lange point = depthIdx[remoteDepths[p]]; 65946f9b1c3SMichael Lange ilocal[point] = point; 66046f9b1c3SMichael Lange iremote[point].index = overlapRemote[p].index; 66146f9b1c3SMichael Lange iremote[point].rank = overlapRemote[p].rank; 66246f9b1c3SMichael Lange depthIdx[remoteDepths[p]]++; 66346f9b1c3SMichael Lange } 66415fff7beSMatthew G. Knepley ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 66546f9b1c3SMichael Lange 66646f9b1c3SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 66746f9b1c3SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr); 66846f9b1c3SMichael Lange ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr); 66946f9b1c3SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 67046f9b1c3SMichael Lange ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 67146f9b1c3SMichael Lange 67246f9b1c3SMichael Lange ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr); 67370034214SMatthew G. Knepley PetscFunctionReturn(0); 67470034214SMatthew G. Knepley } 67570034214SMatthew G. Knepley 676a9f1d5b2SMichael Lange /*@ 677f0e73a3dSToby Isaac DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification. 678a9f1d5b2SMichael Lange 679064ec1f3Sprj- Input Parameters: 680a9f1d5b2SMichael Lange + dm - The DM 681a9f1d5b2SMichael Lange - sf - A star forest with non-ordered leaves, usually defining a DM point migration 682a9f1d5b2SMichael Lange 683a9f1d5b2SMichael Lange Output Parameter: 684a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified 685a9f1d5b2SMichael Lange 686412e9a14SMatthew G. Knepley Note: 687412e9a14SMatthew G. Knepley This lexicographically sorts by (depth, cellType) 688412e9a14SMatthew G. Knepley 689a9f1d5b2SMichael Lange Level: developer 690a9f1d5b2SMichael Lange 691a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap() 692a9f1d5b2SMichael Lange @*/ 693a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF) 694a9f1d5b2SMichael Lange { 695a9f1d5b2SMichael Lange MPI_Comm comm; 6969852e123SBarry Smith PetscMPIInt rank, size; 697412e9a14SMatthew G. Knepley PetscInt d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves; 698412e9a14SMatthew G. Knepley PetscSFNode *pointDepths, *remoteDepths; 699412e9a14SMatthew G. Knepley PetscInt *ilocal; 700a9f1d5b2SMichael Lange PetscInt *depthRecv, *depthShift, *depthIdx; 701412e9a14SMatthew G. Knepley PetscInt *ctRecv, *ctShift, *ctIdx; 702a9f1d5b2SMichael Lange const PetscSFNode *iremote; 703a9f1d5b2SMichael Lange PetscErrorCode ierr; 704a9f1d5b2SMichael Lange 705a9f1d5b2SMichael Lange PetscFunctionBegin; 706a9f1d5b2SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 707a9f1d5b2SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 708*ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 709*ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 7107fab53ddSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr); 711412e9a14SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 712b2566f29SBarry Smith ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 7137fab53ddSMatthew G. Knepley if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth); 71430b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 715a9f1d5b2SMichael Lange 716a9f1d5b2SMichael Lange /* Before building the migration SF we need to know the new stratum offsets */ 717a9f1d5b2SMichael Lange ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr); 718a9f1d5b2SMichael Lange ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr); 7197fab53ddSMatthew G. Knepley for (d = 0; d < depth+1; ++d) { 720a9f1d5b2SMichael Lange ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 721f0e73a3dSToby Isaac for (p = pStart; p < pEnd; ++p) { 722412e9a14SMatthew G. Knepley DMPolytopeType ct; 723f0e73a3dSToby Isaac 724412e9a14SMatthew G. Knepley ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr); 725412e9a14SMatthew G. Knepley pointDepths[p].index = d; 726412e9a14SMatthew G. Knepley pointDepths[p].rank = ct; 727f0e73a3dSToby Isaac } 728412e9a14SMatthew G. Knepley } 729412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;} 730412e9a14SMatthew G. Knepley ierr = PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths);CHKERRQ(ierr); 731412e9a14SMatthew G. Knepley ierr = PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths);CHKERRQ(ierr); 732412e9a14SMatthew G. Knepley /* Count received points in each stratum and compute the internal strata shift */ 733412e9a14SMatthew G. Knepley ierr = PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx);CHKERRQ(ierr); 734412e9a14SMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 735412e9a14SMatthew G. Knepley if (remoteDepths[p].rank < 0) { 736412e9a14SMatthew G. Knepley ++depthRecv[remoteDepths[p].index]; 737412e9a14SMatthew G. Knepley } else { 738412e9a14SMatthew G. Knepley ++ctRecv[remoteDepths[p].rank]; 739412e9a14SMatthew G. Knepley } 740412e9a14SMatthew G. Knepley } 741412e9a14SMatthew G. Knepley { 742412e9a14SMatthew G. Knepley PetscInt depths[4], dims[4], shift = 0, i, c; 743412e9a14SMatthew G. Knepley 7448238f61eSMatthew G. Knepley /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1) 7458238f61eSMatthew G. Knepley Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells 7468238f61eSMatthew G. Knepley */ 747412e9a14SMatthew G. Knepley depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1; 748412e9a14SMatthew G. Knepley dims[0] = dim; dims[1] = 0; dims[2] = dim-1; dims[3] = 1; 749412e9a14SMatthew G. Knepley for (i = 0; i <= depth; ++i) { 750412e9a14SMatthew G. Knepley const PetscInt dep = depths[i]; 751412e9a14SMatthew G. Knepley const PetscInt dim = dims[i]; 752412e9a14SMatthew G. Knepley 753412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 7548238f61eSMatthew G. Knepley if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue; 755412e9a14SMatthew G. Knepley ctShift[c] = shift; 756412e9a14SMatthew G. Knepley shift += ctRecv[c]; 757412e9a14SMatthew G. Knepley } 758412e9a14SMatthew G. Knepley depthShift[dep] = shift; 759412e9a14SMatthew G. Knepley shift += depthRecv[dep]; 760412e9a14SMatthew G. Knepley } 761412e9a14SMatthew G. Knepley for (c = 0; c < DM_NUM_POLYTOPES; ++c) { 762412e9a14SMatthew G. Knepley const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c); 763412e9a14SMatthew G. Knepley 7648238f61eSMatthew G. Knepley if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) { 765412e9a14SMatthew G. Knepley ctShift[c] = shift; 766412e9a14SMatthew G. Knepley shift += ctRecv[c]; 767412e9a14SMatthew G. Knepley } 768412e9a14SMatthew G. Knepley } 769412e9a14SMatthew G. Knepley } 770a9f1d5b2SMichael Lange /* Derive a new local permutation based on stratified indices */ 771a9f1d5b2SMichael Lange ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 7727fab53ddSMatthew G. Knepley for (p = 0; p < nleaves; ++p) { 773412e9a14SMatthew G. Knepley const PetscInt dep = remoteDepths[p].index; 774412e9a14SMatthew G. Knepley const DMPolytopeType ct = (DMPolytopeType) remoteDepths[p].rank; 7757fab53ddSMatthew G. Knepley 776412e9a14SMatthew G. Knepley if ((PetscInt) ct < 0) { 7777fab53ddSMatthew G. Knepley ilocal[p] = depthShift[dep] + depthIdx[dep]; 778412e9a14SMatthew G. Knepley ++depthIdx[dep]; 779412e9a14SMatthew G. Knepley } else { 780412e9a14SMatthew G. Knepley ilocal[p] = ctShift[ct] + ctIdx[ct]; 781412e9a14SMatthew G. Knepley ++ctIdx[ct]; 782412e9a14SMatthew G. Knepley } 783a9f1d5b2SMichael Lange } 784a9f1d5b2SMichael Lange ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr); 785a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr); 786a9f1d5b2SMichael Lange ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr); 787a9f1d5b2SMichael Lange ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr); 788412e9a14SMatthew G. Knepley ierr = PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx);CHKERRQ(ierr); 78930b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr); 790a9f1d5b2SMichael Lange PetscFunctionReturn(0); 791a9f1d5b2SMichael Lange } 792a9f1d5b2SMichael Lange 79370034214SMatthew G. Knepley /*@ 79470034214SMatthew G. Knepley DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 79570034214SMatthew G. Knepley 796d083f849SBarry Smith Collective on dm 79770034214SMatthew G. Knepley 79870034214SMatthew G. Knepley Input Parameters: 79970034214SMatthew G. Knepley + dm - The DMPlex object 80070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 80170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 802cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector 80370034214SMatthew G. Knepley 80470034214SMatthew G. Knepley Output Parameters: 80570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 806cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector 80770034214SMatthew G. Knepley 80870034214SMatthew G. Knepley Level: developer 80970034214SMatthew G. Knepley 81070034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData() 81170034214SMatthew G. Knepley @*/ 81270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec) 81370034214SMatthew G. Knepley { 81470034214SMatthew G. Knepley PetscSF fieldSF; 81570034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 81670034214SMatthew G. Knepley PetscScalar *originalValues, *newValues; 81770034214SMatthew G. Knepley PetscErrorCode ierr; 81870034214SMatthew G. Knepley 81970034214SMatthew G. Knepley PetscFunctionBegin; 82070034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 82170034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 82270034214SMatthew G. Knepley 82370034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 82470034214SMatthew G. Knepley ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr); 82570034214SMatthew G. Knepley ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr); 82670034214SMatthew G. Knepley 82770034214SMatthew G. Knepley ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr); 82870034214SMatthew G. Knepley ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr); 82970034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8308a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 83170034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 83270034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr); 83370034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 83470034214SMatthew G. Knepley ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr); 83570034214SMatthew G. Knepley ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr); 83670034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 83770034214SMatthew G. Knepley PetscFunctionReturn(0); 83870034214SMatthew G. Knepley } 83970034214SMatthew G. Knepley 84070034214SMatthew G. Knepley /*@ 84170034214SMatthew G. Knepley DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 84270034214SMatthew G. Knepley 843d083f849SBarry Smith Collective on dm 84470034214SMatthew G. Knepley 84570034214SMatthew G. Knepley Input Parameters: 84670034214SMatthew G. Knepley + dm - The DMPlex object 84770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 84870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 84970034214SMatthew G. Knepley - originalIS - The existing data 85070034214SMatthew G. Knepley 85170034214SMatthew G. Knepley Output Parameters: 85270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout 85370034214SMatthew G. Knepley - newIS - The new data 85470034214SMatthew G. Knepley 85570034214SMatthew G. Knepley Level: developer 85670034214SMatthew G. Knepley 85770034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData() 85870034214SMatthew G. Knepley @*/ 85970034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS) 86070034214SMatthew G. Knepley { 86170034214SMatthew G. Knepley PetscSF fieldSF; 86270034214SMatthew G. Knepley PetscInt *newValues, *remoteOffsets, fieldSize; 86370034214SMatthew G. Knepley const PetscInt *originalValues; 86470034214SMatthew G. Knepley PetscErrorCode ierr; 86570034214SMatthew G. Knepley 86670034214SMatthew G. Knepley PetscFunctionBegin; 86770034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 86870034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 86970034214SMatthew G. Knepley 87070034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 871854ce69bSBarry Smith ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr); 87270034214SMatthew G. Knepley 87370034214SMatthew G. Knepley ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr); 87470034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 8758a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 876aaf8c182SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 877aaf8c182SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr); 87870034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 87970034214SMatthew G. Knepley ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr); 88070034214SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr); 88170034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr); 88270034214SMatthew G. Knepley PetscFunctionReturn(0); 88370034214SMatthew G. Knepley } 88470034214SMatthew G. Knepley 88570034214SMatthew G. Knepley /*@ 88670034214SMatthew G. Knepley DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution 88770034214SMatthew G. Knepley 888d083f849SBarry Smith Collective on dm 88970034214SMatthew G. Knepley 89070034214SMatthew G. Knepley Input Parameters: 89170034214SMatthew G. Knepley + dm - The DMPlex object 89270034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern 89370034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout 89470034214SMatthew G. Knepley . datatype - The type of data 89570034214SMatthew G. Knepley - originalData - The existing data 89670034214SMatthew G. Knepley 89770034214SMatthew G. Knepley Output Parameters: 89870034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout 89970034214SMatthew G. Knepley - newData - The new data 90070034214SMatthew G. Knepley 90170034214SMatthew G. Knepley Level: developer 90270034214SMatthew G. Knepley 90370034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField() 90470034214SMatthew G. Knepley @*/ 90570034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData) 90670034214SMatthew G. Knepley { 90770034214SMatthew G. Knepley PetscSF fieldSF; 90870034214SMatthew G. Knepley PetscInt *remoteOffsets, fieldSize; 90970034214SMatthew G. Knepley PetscMPIInt dataSize; 91070034214SMatthew G. Knepley PetscErrorCode ierr; 91170034214SMatthew G. Knepley 91270034214SMatthew G. Knepley PetscFunctionBegin; 91370034214SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 91470034214SMatthew G. Knepley ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr); 91570034214SMatthew G. Knepley 91670034214SMatthew G. Knepley ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr); 917*ffc4695bSBarry Smith ierr = MPI_Type_size(datatype, &dataSize);CHKERRMPI(ierr); 91870034214SMatthew G. Knepley ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr); 91970034214SMatthew G. Knepley 92070034214SMatthew G. Knepley ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr); 9218a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 92270034214SMatthew G. Knepley ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 92370034214SMatthew G. Knepley ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr); 92470034214SMatthew G. Knepley ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr); 92570034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr); 92670034214SMatthew G. Knepley PetscFunctionReturn(0); 92770034214SMatthew G. Knepley } 92870034214SMatthew G. Knepley 92924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 930cc71bff1SMichael Lange { 931cc71bff1SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 932cc71bff1SMichael Lange MPI_Comm comm; 933cc71bff1SMichael Lange PetscSF coneSF; 934cc71bff1SMichael Lange PetscSection originalConeSection, newConeSection; 935ac04eaf7SToby Isaac PetscInt *remoteOffsets, *cones, *globCones, *newCones, newConesSize; 936cc71bff1SMichael Lange PetscBool flg; 937cc71bff1SMichael Lange PetscErrorCode ierr; 938cc71bff1SMichael Lange 939cc71bff1SMichael Lange PetscFunctionBegin; 940cc71bff1SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9410c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 9420c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 943cc71bff1SMichael Lange /* Distribute cone section */ 944cc71bff1SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 945cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr); 946cc71bff1SMichael Lange ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr); 947cc71bff1SMichael Lange ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr); 948cc71bff1SMichael Lange ierr = DMSetUp(dmParallel);CHKERRQ(ierr); 949cc71bff1SMichael Lange { 950cc71bff1SMichael Lange PetscInt pStart, pEnd, p; 951cc71bff1SMichael Lange 952cc71bff1SMichael Lange ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr); 953cc71bff1SMichael Lange for (p = pStart; p < pEnd; ++p) { 954cc71bff1SMichael Lange PetscInt coneSize; 955cc71bff1SMichael Lange ierr = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr); 956cc71bff1SMichael Lange pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize); 957cc71bff1SMichael Lange } 958cc71bff1SMichael Lange } 959cc71bff1SMichael Lange /* Communicate and renumber cones */ 960cc71bff1SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr); 9618a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 962cc71bff1SMichael Lange ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr); 963ac04eaf7SToby Isaac if (original) { 964ac04eaf7SToby Isaac PetscInt numCones; 965ac04eaf7SToby Isaac 966367003a6SStefano Zampini ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr); 967367003a6SStefano Zampini ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr); 968ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr); 969367003a6SStefano Zampini } else { 970ac04eaf7SToby Isaac globCones = cones; 971ac04eaf7SToby Isaac } 972cc71bff1SMichael Lange ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr); 973ac04eaf7SToby Isaac ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 974ac04eaf7SToby Isaac ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr); 975ac04eaf7SToby Isaac if (original) { 976ac04eaf7SToby Isaac ierr = PetscFree(globCones);CHKERRQ(ierr); 977ac04eaf7SToby Isaac } 978cc71bff1SMichael Lange ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr); 979cc71bff1SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr); 98076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 9813533c52bSMatthew G. Knepley PetscInt p; 9823533c52bSMatthew G. Knepley PetscBool valid = PETSC_TRUE; 9833533c52bSMatthew G. Knepley for (p = 0; p < newConesSize; ++p) { 984367003a6SStefano Zampini if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);} 9853533c52bSMatthew G. Knepley } 9863533c52bSMatthew G. Knepley if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 9873533c52bSMatthew G. Knepley } 988c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr); 989cc71bff1SMichael Lange if (flg) { 990cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr); 991a8c5bd36SStefano Zampini ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 992cc71bff1SMichael Lange ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr); 993a8c5bd36SStefano Zampini ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 994cc71bff1SMichael Lange ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr); 995cc71bff1SMichael Lange } 996cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr); 997cc71bff1SMichael Lange ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr); 998cc71bff1SMichael Lange ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 999cc71bff1SMichael Lange ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr); 1000cc71bff1SMichael Lange ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr); 1001cc71bff1SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr); 1002eaf898f9SPatrick Sanan /* Create supports and stratify DMPlex */ 1003cc71bff1SMichael Lange { 1004cc71bff1SMichael Lange PetscInt pStart, pEnd; 1005cc71bff1SMichael Lange 1006cc71bff1SMichael Lange ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr); 1007cc71bff1SMichael Lange ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr); 1008cc71bff1SMichael Lange } 1009cc71bff1SMichael Lange ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr); 1010cc71bff1SMichael Lange ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr); 10111cf84007SMatthew G. Knepley { 10121cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 10131cf84007SMatthew G. Knepley 1014b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1015b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 10161cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 10171cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 10181cf84007SMatthew G. Knepley } 1019cc71bff1SMichael Lange PetscFunctionReturn(0); 1020cc71bff1SMichael Lange } 1021cc71bff1SMichael Lange 102224cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel) 10230df0e737SMichael Lange { 10240df0e737SMichael Lange MPI_Comm comm; 10250df0e737SMichael Lange PetscSection originalCoordSection, newCoordSection; 10260df0e737SMichael Lange Vec originalCoordinates, newCoordinates; 10270df0e737SMichael Lange PetscInt bs; 102890b157c4SStefano Zampini PetscBool isper; 10290df0e737SMichael Lange const char *name; 10300df0e737SMichael Lange const PetscReal *maxCell, *L; 10315dc8c3f7SMatthew G. Knepley const DMBoundaryType *bd; 10320df0e737SMichael Lange PetscErrorCode ierr; 10330df0e737SMichael Lange 10340df0e737SMichael Lange PetscFunctionBegin; 10350df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10360c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10370df0e737SMichael Lange 10380df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 10390df0e737SMichael Lange ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr); 10400df0e737SMichael Lange ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr); 10410df0e737SMichael Lange ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr); 10420df0e737SMichael Lange if (originalCoordinates) { 10438b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 10440df0e737SMichael Lange ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr); 10450df0e737SMichael Lange ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr); 10460df0e737SMichael Lange 10470df0e737SMichael Lange ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr); 10480df0e737SMichael Lange ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr); 10490df0e737SMichael Lange ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr); 10500df0e737SMichael Lange ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr); 10510df0e737SMichael Lange ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 10520df0e737SMichael Lange } 105390b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 105490b157c4SStefano Zampini ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr); 10550df0e737SMichael Lange PetscFunctionReturn(0); 10560df0e737SMichael Lange } 10570df0e737SMichael Lange 105824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel) 10590df0e737SMichael Lange { 1060df0420ecSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 10610df0e737SMichael Lange MPI_Comm comm; 10627980c9d4SMatthew G. Knepley DMLabel depthLabel; 10630df0e737SMichael Lange PetscMPIInt rank; 10647980c9d4SMatthew G. Knepley PetscInt depth, d, numLabels, numLocalLabels, l; 1065df0420ecSMatthew G. Knepley PetscBool hasLabels = PETSC_FALSE, lsendDepth, sendDepth; 1066df0420ecSMatthew G. Knepley PetscObjectState depthState = -1; 10670df0e737SMichael Lange PetscErrorCode ierr; 10680df0e737SMichael Lange 10690df0e737SMichael Lange PetscFunctionBegin; 10700df0e737SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10710c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 10720c86c063SLisandro Dalcin 10730df0e737SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 10740df0e737SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1075*ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 10760df0e737SMichael Lange 1077df0420ecSMatthew G. Knepley /* If the user has changed the depth label, communicate it instead */ 10787980c9d4SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 10797980c9d4SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 1080d67d17b1SMatthew G. Knepley if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);} 1081df0420ecSMatthew G. Knepley lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE; 1082b2566f29SBarry Smith ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr); 1083df0420ecSMatthew G. Knepley if (sendDepth) { 1084a7998027SVaclav Hapla ierr = DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel);CHKERRQ(ierr); 1085a7998027SVaclav Hapla ierr = DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE);CHKERRQ(ierr); 1086df0420ecSMatthew G. Knepley } 1087d995df53SMatthew G. Knepley /* Everyone must have either the same number of labels, or none */ 1088c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr); 1089d995df53SMatthew G. Knepley numLabels = numLocalLabels; 1090*ffc4695bSBarry Smith ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRMPI(ierr); 1091627847f0SMatthew G. Knepley if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE; 10925d80c0bfSVaclav Hapla for (l = 0; l < numLabels; ++l) { 1093bdd2d751SMichael Lange DMLabel label = NULL, labelNew = NULL; 109483e10cb3SLisandro Dalcin PetscBool isDepth, lisOutput = PETSC_TRUE, isOutput; 1095d67d17b1SMatthew G. Knepley const char *name = NULL; 10960df0e737SMichael Lange 1097d67d17b1SMatthew G. Knepley if (hasLabels) { 1098d67d17b1SMatthew G. Knepley ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr); 10990df0e737SMichael Lange /* Skip "depth" because it is recreated */ 1100d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr); 1101d67d17b1SMatthew G. Knepley ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr); 1102d67d17b1SMatthew G. Knepley } 1103*ffc4695bSBarry Smith ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRMPI(ierr); 110483e10cb3SLisandro Dalcin if (isDepth && !sendDepth) continue; 1105bdd2d751SMichael Lange ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr); 110683e10cb3SLisandro Dalcin if (isDepth) { 11077980c9d4SMatthew G. Knepley /* Put in any missing strata which can occur if users are managing the depth label themselves */ 11087980c9d4SMatthew G. Knepley PetscInt gdepth; 11097980c9d4SMatthew G. Knepley 11107980c9d4SMatthew G. Knepley ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr); 11117980c9d4SMatthew G. Knepley if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth); 11127980c9d4SMatthew G. Knepley for (d = 0; d <= gdepth; ++d) { 11137980c9d4SMatthew G. Knepley PetscBool has; 11147980c9d4SMatthew G. Knepley 11157980c9d4SMatthew G. Knepley ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr); 111683e10cb3SLisandro Dalcin if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);} 11177980c9d4SMatthew G. Knepley } 11187980c9d4SMatthew G. Knepley } 1119c58f1c22SToby Isaac ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr); 112083e10cb3SLisandro Dalcin /* Put the output flag in the new label */ 1121d67d17b1SMatthew G. Knepley if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);} 112283e10cb3SLisandro Dalcin ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr); 1123d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr); 1124d67d17b1SMatthew G. Knepley ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr); 112508f633c4SVaclav Hapla ierr = DMLabelDestroy(&labelNew);CHKERRQ(ierr); 11260df0e737SMichael Lange } 11270df0e737SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr); 11280df0e737SMichael Lange PetscFunctionReturn(0); 11290df0e737SMichael Lange } 11300df0e737SMichael Lange 113124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel) 1132a6f36705SMichael Lange { 113315078cd4SMichael Lange DM_Plex *mesh = (DM_Plex*) dm->data; 113415078cd4SMichael Lange DM_Plex *pmesh = (DM_Plex*) (dmParallel)->data; 1135a6f36705SMichael Lange MPI_Comm comm; 1136a6f36705SMichael Lange DM refTree; 1137a6f36705SMichael Lange PetscSection origParentSection, newParentSection; 1138a6f36705SMichael Lange PetscInt *origParents, *origChildIDs; 1139a6f36705SMichael Lange PetscBool flg; 1140a6f36705SMichael Lange PetscErrorCode ierr; 1141a6f36705SMichael Lange 1142a6f36705SMichael Lange PetscFunctionBegin; 1143a6f36705SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11440c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5); 1145a6f36705SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1146a6f36705SMichael Lange 1147a6f36705SMichael Lange /* Set up tree */ 1148a6f36705SMichael Lange ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 1149a6f36705SMichael Lange ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr); 1150a6f36705SMichael Lange ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr); 1151a6f36705SMichael Lange if (origParentSection) { 1152a6f36705SMichael Lange PetscInt pStart, pEnd; 115308633170SToby Isaac PetscInt *newParents, *newChildIDs, *globParents; 1154a6f36705SMichael Lange PetscInt *remoteOffsetsParents, newParentSize; 1155a6f36705SMichael Lange PetscSF parentSF; 1156a6f36705SMichael Lange 1157a6f36705SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 1158a6f36705SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr); 1159a6f36705SMichael Lange ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr); 1160a6f36705SMichael Lange ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr); 1161a6f36705SMichael Lange ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr); 11628a713f3bSLawrence Mitchell ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr); 1163a6f36705SMichael Lange ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr); 1164a6f36705SMichael Lange ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr); 116508633170SToby Isaac if (original) { 116608633170SToby Isaac PetscInt numParents; 116708633170SToby Isaac 116808633170SToby Isaac ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr); 116908633170SToby Isaac ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr); 117008633170SToby Isaac ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr); 117108633170SToby Isaac } 117208633170SToby Isaac else { 117308633170SToby Isaac globParents = origParents; 117408633170SToby Isaac } 117508633170SToby Isaac ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 117608633170SToby Isaac ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr); 117708633170SToby Isaac if (original) { 117808633170SToby Isaac ierr = PetscFree(globParents);CHKERRQ(ierr); 117908633170SToby Isaac } 1180a6f36705SMichael Lange ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1181a6f36705SMichael Lange ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr); 1182a6f36705SMichael Lange ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr); 118376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 11844a54e071SToby Isaac PetscInt p; 11854a54e071SToby Isaac PetscBool valid = PETSC_TRUE; 11864a54e071SToby Isaac for (p = 0; p < newParentSize; ++p) { 11874a54e071SToby Isaac if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);} 11884a54e071SToby Isaac } 11894a54e071SToby Isaac if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map"); 11904a54e071SToby Isaac } 1191c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr); 1192a6f36705SMichael Lange if (flg) { 1193a6f36705SMichael Lange ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr); 1194a8c5bd36SStefano Zampini ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1195a6f36705SMichael Lange ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr); 1196a8c5bd36SStefano Zampini ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1197a6f36705SMichael Lange ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr); 1198a6f36705SMichael Lange } 1199a6f36705SMichael Lange ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr); 1200a6f36705SMichael Lange ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr); 1201a6f36705SMichael Lange ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr); 1202a6f36705SMichael Lange ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr); 1203a6f36705SMichael Lange } 120415078cd4SMichael Lange pmesh->useAnchors = mesh->useAnchors; 1205a6f36705SMichael Lange PetscFunctionReturn(0); 1206a6f36705SMichael Lange } 12070df0e737SMichael Lange 120824cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel) 12094eca1733SMichael Lange { 12109852e123SBarry Smith PetscMPIInt rank, size; 12114eca1733SMichael Lange MPI_Comm comm; 12124eca1733SMichael Lange PetscErrorCode ierr; 12134eca1733SMichael Lange 12144eca1733SMichael Lange PetscFunctionBegin; 12154eca1733SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 12160c86c063SLisandro Dalcin PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3); 12174eca1733SMichael Lange 12184eca1733SMichael Lange /* Create point SF for parallel mesh */ 12194eca1733SMichael Lange ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12204eca1733SMichael Lange ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1221*ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 1222*ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 12234eca1733SMichael Lange { 12244eca1733SMichael Lange const PetscInt *leaves; 12254eca1733SMichael Lange PetscSFNode *remotePoints, *rowners, *lowners; 12264eca1733SMichael Lange PetscInt numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints; 12274eca1733SMichael Lange PetscInt pStart, pEnd; 12284eca1733SMichael Lange 12294eca1733SMichael Lange ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr); 12304eca1733SMichael Lange ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr); 12314eca1733SMichael Lange ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr); 12324eca1733SMichael Lange for (p=0; p<numRoots; p++) { 12334eca1733SMichael Lange rowners[p].rank = -1; 12344eca1733SMichael Lange rowners[p].index = -1; 12354eca1733SMichael Lange } 12364eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12374eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12384eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12394eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */ 12404eca1733SMichael Lange lowners[p].rank = rank; 12414eca1733SMichael Lange lowners[p].index = leaves ? leaves[p] : p; 12424eca1733SMichael Lange } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */ 12434eca1733SMichael Lange lowners[p].rank = -2; 12444eca1733SMichael Lange lowners[p].index = -2; 12454eca1733SMichael Lange } 12464eca1733SMichael Lange } 12474eca1733SMichael Lange for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */ 12484eca1733SMichael Lange rowners[p].rank = -3; 12494eca1733SMichael Lange rowners[p].index = -3; 12504eca1733SMichael Lange } 12514eca1733SMichael Lange ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12524eca1733SMichael Lange ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr); 12534eca1733SMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12544eca1733SMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr); 12554eca1733SMichael Lange for (p = 0; p < numLeaves; ++p) { 12564eca1733SMichael Lange if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed"); 12574eca1733SMichael Lange if (lowners[p].rank != rank) ++numGhostPoints; 12584eca1733SMichael Lange } 12594eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr); 12604eca1733SMichael Lange ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr); 12614eca1733SMichael Lange for (p = 0, gp = 0; p < numLeaves; ++p) { 12624eca1733SMichael Lange if (lowners[p].rank != rank) { 12634eca1733SMichael Lange ghostPoints[gp] = leaves ? leaves[p] : p; 12644eca1733SMichael Lange remotePoints[gp].rank = lowners[p].rank; 12654eca1733SMichael Lange remotePoints[gp].index = lowners[p].index; 12664eca1733SMichael Lange ++gp; 12674eca1733SMichael Lange } 12684eca1733SMichael Lange } 12694eca1733SMichael Lange ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr); 12704eca1733SMichael Lange ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 12714eca1733SMichael Lange ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr); 12724eca1733SMichael Lange } 12731cf84007SMatthew G. Knepley { 12741cf84007SMatthew G. Knepley PetscBool useCone, useClosure, useAnchors; 12751cf84007SMatthew G. Knepley 1276b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 1277b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr); 12781cf84007SMatthew G. Knepley ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr); 12791cf84007SMatthew G. Knepley ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr); 12801cf84007SMatthew G. Knepley } 12814eca1733SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr); 12824eca1733SMichael Lange PetscFunctionReturn(0); 12834eca1733SMichael Lange } 12844eca1733SMichael Lange 128598ba2d7fSLawrence Mitchell /*@ 128698ba2d7fSLawrence Mitchell DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition? 128798ba2d7fSLawrence Mitchell 128898ba2d7fSLawrence Mitchell Input Parameters: 128998ba2d7fSLawrence Mitchell + dm - The DMPlex object 129098ba2d7fSLawrence Mitchell - flg - Balance the partition? 129198ba2d7fSLawrence Mitchell 129298ba2d7fSLawrence Mitchell Level: intermediate 129398ba2d7fSLawrence Mitchell 129498ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance() 129598ba2d7fSLawrence Mitchell @*/ 129698ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg) 129798ba2d7fSLawrence Mitchell { 129898ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 129998ba2d7fSLawrence Mitchell 130098ba2d7fSLawrence Mitchell PetscFunctionBegin; 130198ba2d7fSLawrence Mitchell mesh->partitionBalance = flg; 130298ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 130398ba2d7fSLawrence Mitchell } 130498ba2d7fSLawrence Mitchell 130598ba2d7fSLawrence Mitchell /*@ 130698ba2d7fSLawrence Mitchell DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition? 130798ba2d7fSLawrence Mitchell 130898ba2d7fSLawrence Mitchell Input Parameter: 1309a2b725a8SWilliam Gropp . dm - The DMPlex object 131098ba2d7fSLawrence Mitchell 131198ba2d7fSLawrence Mitchell Output Parameter: 1312a2b725a8SWilliam Gropp . flg - Balance the partition? 131398ba2d7fSLawrence Mitchell 131498ba2d7fSLawrence Mitchell Level: intermediate 131598ba2d7fSLawrence Mitchell 131698ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance() 131798ba2d7fSLawrence Mitchell @*/ 131898ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg) 131998ba2d7fSLawrence Mitchell { 132098ba2d7fSLawrence Mitchell DM_Plex *mesh = (DM_Plex *)dm->data; 132198ba2d7fSLawrence Mitchell 132298ba2d7fSLawrence Mitchell PetscFunctionBegin; 132398ba2d7fSLawrence Mitchell PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1324534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 132598ba2d7fSLawrence Mitchell *flg = mesh->partitionBalance; 132698ba2d7fSLawrence Mitchell PetscFunctionReturn(0); 132798ba2d7fSLawrence Mitchell } 132898ba2d7fSLawrence Mitchell 1329fc02256fSLawrence Mitchell typedef struct { 1330fc02256fSLawrence Mitchell PetscInt vote, rank, index; 1331fc02256fSLawrence Mitchell } Petsc3Int; 1332fc02256fSLawrence Mitchell 1333fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */ 13342eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype) 1335fc02256fSLawrence Mitchell { 1336fc02256fSLawrence Mitchell Petsc3Int *a = (Petsc3Int *)inout_; 1337fc02256fSLawrence Mitchell Petsc3Int *b = (Petsc3Int *)in_; 1338fc02256fSLawrence Mitchell PetscInt i, len = *len_; 1339fc02256fSLawrence Mitchell for (i = 0; i < len; i++) { 1340fc02256fSLawrence Mitchell if (a[i].vote < b[i].vote) { 1341fc02256fSLawrence Mitchell a[i].vote = b[i].vote; 1342fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1343fc02256fSLawrence Mitchell a[i].index = b[i].index; 1344fc02256fSLawrence Mitchell } else if (a[i].vote <= b[i].vote) { 1345fc02256fSLawrence Mitchell if (a[i].rank >= b[i].rank) { 1346fc02256fSLawrence Mitchell a[i].rank = b[i].rank; 1347fc02256fSLawrence Mitchell a[i].index = b[i].index; 1348fc02256fSLawrence Mitchell } 1349fc02256fSLawrence Mitchell } 1350fc02256fSLawrence Mitchell } 1351fc02256fSLawrence Mitchell } 1352fc02256fSLawrence Mitchell 1353f5bf2dbfSMichael Lange /*@C 1354a8c5bd36SStefano Zampini DMPlexCreatePointSF - Build a point SF from an SF describing a point migration 1355f5bf2dbfSMichael Lange 1356064ec1f3Sprj- Input Parameters: 1357f5bf2dbfSMichael Lange + dm - The source DMPlex object 1358f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping 13591627f6ccSMichael Lange . ownership - Flag causing a vote to determine point ownership 1360f5bf2dbfSMichael Lange 1361f5bf2dbfSMichael Lange Output Parameter: 1362f5bf2dbfSMichael Lange - pointSF - The star forest describing the point overlap in the remapped DM 1363f5bf2dbfSMichael Lange 13643618482eSVaclav Hapla Notes: 13653618482eSVaclav Hapla Output pointSF is guaranteed to have the array of local indices (leaves) sorted. 13663618482eSVaclav Hapla 1367f5bf2dbfSMichael Lange Level: developer 1368f5bf2dbfSMichael Lange 1369f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 1370f5bf2dbfSMichael Lange @*/ 1371f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF) 1372f5bf2dbfSMichael Lange { 137323193802SMatthew G. Knepley PetscMPIInt rank, size; 13741627f6ccSMichael Lange PetscInt p, nroots, nleaves, idx, npointLeaves; 1375f5bf2dbfSMichael Lange PetscInt *pointLocal; 1376f5bf2dbfSMichael Lange const PetscInt *leaves; 1377f5bf2dbfSMichael Lange const PetscSFNode *roots; 1378f5bf2dbfSMichael Lange PetscSFNode *rootNodes, *leafNodes, *pointRemote; 137923193802SMatthew G. Knepley Vec shifts; 1380cae3e4f3SLawrence Mitchell const PetscInt numShifts = 13759; 138123193802SMatthew G. Knepley const PetscScalar *shift = NULL; 138223193802SMatthew G. Knepley const PetscBool shiftDebug = PETSC_FALSE; 138398ba2d7fSLawrence Mitchell PetscBool balance; 1384f5bf2dbfSMichael Lange PetscErrorCode ierr; 1385f5bf2dbfSMichael Lange 1386f5bf2dbfSMichael Lange PetscFunctionBegin; 1387f5bf2dbfSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1388*ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr); 1389*ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr); 139030b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1391f5bf2dbfSMichael Lange 139298ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 1393f5bf2dbfSMichael Lange ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr); 1394f5bf2dbfSMichael Lange ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr); 1395f5bf2dbfSMichael Lange if (ownership) { 1396fc02256fSLawrence Mitchell MPI_Op op; 1397fc02256fSLawrence Mitchell MPI_Datatype datatype; 1398fc02256fSLawrence Mitchell Petsc3Int *rootVote = NULL, *leafVote = NULL; 139923193802SMatthew G. Knepley /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */ 140098ba2d7fSLawrence Mitchell if (balance) { 140123193802SMatthew G. Knepley PetscRandom r; 140223193802SMatthew G. Knepley 140323193802SMatthew G. Knepley ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr); 1404cae3e4f3SLawrence Mitchell ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr); 140523193802SMatthew G. Knepley ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr); 140623193802SMatthew G. Knepley ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr); 140723193802SMatthew G. Knepley ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr); 140823193802SMatthew G. Knepley ierr = VecSetRandom(shifts, r);CHKERRQ(ierr); 140923193802SMatthew G. Knepley ierr = PetscRandomDestroy(&r);CHKERRQ(ierr); 141023193802SMatthew G. Knepley ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr); 141123193802SMatthew G. Knepley } 141223193802SMatthew G. Knepley 1413fc02256fSLawrence Mitchell ierr = PetscMalloc1(nroots, &rootVote);CHKERRQ(ierr); 1414fc02256fSLawrence Mitchell ierr = PetscMalloc1(nleaves, &leafVote);CHKERRQ(ierr); 141523193802SMatthew G. Knepley /* Point ownership vote: Process with highest rank owns shared points */ 1416f5bf2dbfSMichael Lange for (p = 0; p < nleaves; ++p) { 141723193802SMatthew G. Knepley if (shiftDebug) { 1418e7bcd635SMatthew G. Knepley ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr); 141923193802SMatthew G. Knepley } 1420f5bf2dbfSMichael Lange /* Either put in a bid or we know we own it */ 1421fc02256fSLawrence Mitchell leafVote[p].vote = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size; 1422fc02256fSLawrence Mitchell leafVote[p].rank = rank; 1423fc02256fSLawrence Mitchell leafVote[p].index = p; 1424f5bf2dbfSMichael Lange } 1425f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 14261627f6ccSMichael Lange /* Root must not participate in the reduction, flag so that MAXLOC does not use */ 1427fc02256fSLawrence Mitchell rootVote[p].vote = -3; 1428fc02256fSLawrence Mitchell rootVote[p].rank = -3; 1429fc02256fSLawrence Mitchell rootVote[p].index = -3; 1430f5bf2dbfSMichael Lange } 1431*ffc4695bSBarry Smith ierr = MPI_Type_contiguous(3, MPIU_INT, &datatype);CHKERRMPI(ierr); 1432*ffc4695bSBarry Smith ierr = MPI_Type_commit(&datatype);CHKERRMPI(ierr); 1433*ffc4695bSBarry Smith ierr = MPI_Op_create(&MaxLocCarry, 1, &op);CHKERRMPI(ierr); 1434fc02256fSLawrence Mitchell ierr = PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr); 1435fc02256fSLawrence Mitchell ierr = PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr); 1436*ffc4695bSBarry Smith ierr = MPI_Op_free(&op);CHKERRMPI(ierr); 1437*ffc4695bSBarry Smith ierr = MPI_Type_free(&datatype);CHKERRMPI(ierr); 1438c091126eSLawrence Mitchell for (p = 0; p < nroots; p++) { 1439fc02256fSLawrence Mitchell rootNodes[p].rank = rootVote[p].rank; 1440fc02256fSLawrence Mitchell rootNodes[p].index = rootVote[p].index; 1441c091126eSLawrence Mitchell } 1442fc02256fSLawrence Mitchell ierr = PetscFree(leafVote);CHKERRQ(ierr); 1443fc02256fSLawrence Mitchell ierr = PetscFree(rootVote);CHKERRQ(ierr); 1444f5bf2dbfSMichael Lange } else { 1445f5bf2dbfSMichael Lange for (p = 0; p < nroots; p++) { 1446f5bf2dbfSMichael Lange rootNodes[p].index = -1; 1447f5bf2dbfSMichael Lange rootNodes[p].rank = rank; 1448fc02256fSLawrence Mitchell } 1449f5bf2dbfSMichael Lange for (p = 0; p < nleaves; p++) { 1450f5bf2dbfSMichael Lange /* Write new local id into old location */ 1451f5bf2dbfSMichael Lange if (roots[p].rank == rank) { 14526462276dSToby Isaac rootNodes[roots[p].index].index = leaves ? leaves[p] : p; 1453f5bf2dbfSMichael Lange } 1454f5bf2dbfSMichael Lange } 1455f5bf2dbfSMichael Lange } 1456f5bf2dbfSMichael Lange ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1457f5bf2dbfSMichael Lange ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr); 1458f5bf2dbfSMichael Lange 145923193802SMatthew G. Knepley for (npointLeaves = 0, p = 0; p < nleaves; p++) { 1460b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) npointLeaves++; 146123193802SMatthew G. Knepley } 14621627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr); 14631627f6ccSMichael Lange ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr); 1464f5bf2dbfSMichael Lange for (idx = 0, p = 0; p < nleaves; p++) { 1465b0e1264bSMatthew G. Knepley if (leafNodes[p].rank != rank) { 14663618482eSVaclav Hapla /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */ 1467f5bf2dbfSMichael Lange pointLocal[idx] = p; 1468f5bf2dbfSMichael Lange pointRemote[idx] = leafNodes[p]; 1469f5bf2dbfSMichael Lange idx++; 1470f5bf2dbfSMichael Lange } 1471f5bf2dbfSMichael Lange } 147223193802SMatthew G. Knepley if (shift) { 147323193802SMatthew G. Knepley ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr); 147423193802SMatthew G. Knepley ierr = VecDestroy(&shifts);CHKERRQ(ierr); 147523193802SMatthew G. Knepley } 147623193802SMatthew G. Knepley if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);} 1477f5bf2dbfSMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr); 14781627f6ccSMichael Lange ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr); 1479f5bf2dbfSMichael Lange ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 1480f5bf2dbfSMichael Lange ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr); 148130b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr); 1482f5bf2dbfSMichael Lange PetscFunctionReturn(0); 1483f5bf2dbfSMichael Lange } 1484f5bf2dbfSMichael Lange 148515078cd4SMichael Lange /*@C 148615078cd4SMichael Lange DMPlexMigrate - Migrates internal DM data over the supplied star forest 148715078cd4SMichael Lange 1488d083f849SBarry Smith Collective on dm 148983655b49SVáclav Hapla 1490064ec1f3Sprj- Input Parameters: 149115078cd4SMichael Lange + dm - The source DMPlex object 14921627f6ccSMichael Lange . sf - The star forest communication context describing the migration pattern 149315078cd4SMichael Lange 149415078cd4SMichael Lange Output Parameter: 149515078cd4SMichael Lange - targetDM - The target DMPlex object 149615078cd4SMichael Lange 1497b9f40539SMichael Lange Level: intermediate 149815078cd4SMichael Lange 149915078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap() 150015078cd4SMichael Lange @*/ 1501b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM) 150215078cd4SMichael Lange { 1503b9f40539SMichael Lange MPI_Comm comm; 1504cc1750acSStefano Zampini PetscInt dim, cdim, nroots; 1505b9f40539SMichael Lange PetscSF sfPoint; 150615078cd4SMichael Lange ISLocalToGlobalMapping ltogMigration; 1507ac04eaf7SToby Isaac ISLocalToGlobalMapping ltogOriginal = NULL; 1508b9f40539SMichael Lange PetscBool flg; 150915078cd4SMichael Lange PetscErrorCode ierr; 151015078cd4SMichael Lange 151115078cd4SMichael Lange PetscFunctionBegin; 151215078cd4SMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15131b858b30SMichael Lange ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 1514b9f40539SMichael Lange ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 151515078cd4SMichael Lange ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 151615078cd4SMichael Lange ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr); 1517cc1750acSStefano Zampini ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 1518cc1750acSStefano Zampini ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr); 151915078cd4SMichael Lange 1520bfb0467fSMichael Lange /* Check for a one-to-all distribution pattern */ 1521b9f40539SMichael Lange ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 1522b9f40539SMichael Lange ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 1523bfb0467fSMichael Lange if (nroots >= 0) { 1524b9f40539SMichael Lange IS isOriginal; 1525ac04eaf7SToby Isaac PetscInt n, size, nleaves; 1526ac04eaf7SToby Isaac PetscInt *numbering_orig, *numbering_new; 1527367003a6SStefano Zampini 1528b9f40539SMichael Lange /* Get the original point numbering */ 1529b9f40539SMichael Lange ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr); 1530b9f40539SMichael Lange ierr = ISLocalToGlobalMappingCreateIS(isOriginal, <ogOriginal);CHKERRQ(ierr); 1531b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr); 1532b9f40539SMichael Lange ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1533b9f40539SMichael Lange /* Convert to positive global numbers */ 1534b9f40539SMichael Lange for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);} 1535b9f40539SMichael Lange /* Derive the new local-to-global mapping from the old one */ 1536b9f40539SMichael Lange ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 1537b9f40539SMichael Lange ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr); 15386e0288c8SStefano Zampini ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr); 15396e0288c8SStefano Zampini ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr); 15406e0288c8SStefano Zampini ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, <ogMigration);CHKERRQ(ierr); 1541b9f40539SMichael Lange ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr); 1542b9f40539SMichael Lange ierr = ISDestroy(&isOriginal);CHKERRQ(ierr); 154315078cd4SMichael Lange } else { 1544bfb0467fSMichael Lange /* One-to-all distribution pattern: We can derive LToG from SF */ 154515078cd4SMichael Lange ierr = ISLocalToGlobalMappingCreateSF(sf, 0, <ogMigration);CHKERRQ(ierr); 154615078cd4SMichael Lange } 1547c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 1548b9f40539SMichael Lange if (flg) { 1549b9f40539SMichael Lange ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr); 1550b9f40539SMichael Lange ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr); 1551b9f40539SMichael Lange } 155215078cd4SMichael Lange /* Migrate DM data to target DM */ 1553ac04eaf7SToby Isaac ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 155415078cd4SMichael Lange ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr); 15550dc1530dSSander Arens ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr); 155608633170SToby Isaac ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr); 1557ac04eaf7SToby Isaac ierr = ISLocalToGlobalMappingDestroy(<ogOriginal);CHKERRQ(ierr); 1558302440fdSBarry Smith ierr = ISLocalToGlobalMappingDestroy(<ogMigration);CHKERRQ(ierr); 15591b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr); 156015078cd4SMichael Lange PetscFunctionReturn(0); 156115078cd4SMichael Lange } 156215078cd4SMichael Lange 15633b8f15a2SMatthew G. Knepley /*@C 156470034214SMatthew G. Knepley DMPlexDistribute - Distributes the mesh and any associated sections. 156570034214SMatthew G. Knepley 1566d083f849SBarry Smith Collective on dm 156770034214SMatthew G. Knepley 1568064ec1f3Sprj- Input Parameters: 156970034214SMatthew G. Knepley + dm - The original DMPlex object 157070034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default 157170034214SMatthew G. Knepley 1572064ec1f3Sprj- Output Parameters: 1573f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed 1574f4ae5380SJed Brown - dmParallel - The distributed DMPlex object 157570034214SMatthew G. Knepley 1576f4ae5380SJed Brown Note: If the mesh was not distributed, the output dmParallel will be NULL. 157770034214SMatthew G. Knepley 1578b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 157970034214SMatthew G. Knepley representation on the mesh. 158070034214SMatthew G. Knepley 158170034214SMatthew G. Knepley Level: intermediate 158270034214SMatthew G. Knepley 1583cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexGetOverlap() 158470034214SMatthew G. Knepley @*/ 158580cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel) 158670034214SMatthew G. Knepley { 158770034214SMatthew G. Knepley MPI_Comm comm; 158815078cd4SMichael Lange PetscPartitioner partitioner; 1589f8987ae8SMichael Lange IS cellPart; 1590f8987ae8SMichael Lange PetscSection cellPartSection; 1591cf86098cSMatthew G. Knepley DM dmCoord; 1592f8987ae8SMichael Lange DMLabel lblPartition, lblMigration; 1593874ddda9SLisandro Dalcin PetscSF sfMigration, sfStratified, sfPoint; 159498ba2d7fSLawrence Mitchell PetscBool flg, balance; 1595874ddda9SLisandro Dalcin PetscMPIInt rank, size; 159670034214SMatthew G. Knepley PetscErrorCode ierr; 159770034214SMatthew G. Knepley 159870034214SMatthew G. Knepley PetscFunctionBegin; 159970034214SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1600d5c515a1SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, overlap, 2); 1601d5c515a1SMatthew G. Knepley if (sf) PetscValidPointer(sf,3); 1602d5c515a1SMatthew G. Knepley PetscValidPointer(dmParallel,4); 160370034214SMatthew G. Knepley 16040c86c063SLisandro Dalcin if (sf) *sf = NULL; 16050c86c063SLisandro Dalcin *dmParallel = NULL; 160670034214SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 1607*ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 1608*ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 16090c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 161070034214SMatthew G. Knepley 16110c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 161215078cd4SMichael Lange /* Create cell partition */ 161367eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 161477623264SMatthew G. Knepley ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr); 161515078cd4SMichael Lange ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr); 16163c41b853SStefano Zampini ierr = PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart);CHKERRQ(ierr); 161730b0ce1bSStefano Zampini ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 1618f8987ae8SMichael Lange { 1619f8987ae8SMichael Lange /* Convert partition to DMLabel */ 1620825f8a23SLisandro Dalcin IS is; 1621825f8a23SLisandro Dalcin PetscHSetI ht; 1622f8987ae8SMichael Lange const PetscInt *points; 16238e330a33SStefano Zampini PetscInt *iranks; 16248e330a33SStefano Zampini PetscInt pStart, pEnd, proc, npoints, poff = 0, nranks; 1625825f8a23SLisandro Dalcin 1626d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr); 1627825f8a23SLisandro Dalcin /* Preallocate strata */ 1628825f8a23SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 1629825f8a23SLisandro Dalcin ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1630825f8a23SLisandro Dalcin for (proc = pStart; proc < pEnd; proc++) { 1631825f8a23SLisandro Dalcin ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1632825f8a23SLisandro Dalcin if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);} 1633825f8a23SLisandro Dalcin } 1634825f8a23SLisandro Dalcin ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr); 1635825f8a23SLisandro Dalcin ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr); 1636825f8a23SLisandro Dalcin ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr); 1637825f8a23SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 1638825f8a23SLisandro Dalcin ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr); 1639825f8a23SLisandro Dalcin ierr = PetscFree(iranks);CHKERRQ(ierr); 1640825f8a23SLisandro Dalcin /* Inline DMPlexPartitionLabelClosure() */ 1641f8987ae8SMichael Lange ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr); 1642f8987ae8SMichael Lange ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr); 1643f8987ae8SMichael Lange for (proc = pStart; proc < pEnd; proc++) { 1644f8987ae8SMichael Lange ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr); 1645825f8a23SLisandro Dalcin if (!npoints) continue; 1646825f8a23SLisandro Dalcin ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr); 16478e330a33SStefano Zampini ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr); 1648825f8a23SLisandro Dalcin ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr); 1649825f8a23SLisandro Dalcin ierr = ISDestroy(&is);CHKERRQ(ierr); 1650f8987ae8SMichael Lange } 1651f8987ae8SMichael Lange ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr); 1652f8987ae8SMichael Lange } 165330b0ce1bSStefano Zampini ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr); 16546e203dd9SStefano Zampini 1655d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr); 1656874ddda9SLisandro Dalcin ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr); 1657302440fdSBarry Smith ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr); 165843f7d02bSMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr); 165943f7d02bSMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 166043f7d02bSMichael Lange sfMigration = sfStratified; 166130b0ce1bSStefano Zampini ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr); 166267eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1663c5929fdfSBarry Smith ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr); 166470034214SMatthew G. Knepley if (flg) { 1665a8c5bd36SStefano Zampini ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 1666a8c5bd36SStefano Zampini ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr); 166770034214SMatthew G. Knepley } 1668f8987ae8SMichael Lange 166915078cd4SMichael Lange /* Create non-overlapping parallel DM and migrate internal data */ 167070034214SMatthew G. Knepley ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr); 167170034214SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr); 1672b9f40539SMichael Lange ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr); 167370034214SMatthew G. Knepley 1674a157612eSMichael Lange /* Build the point SF without overlap */ 167598ba2d7fSLawrence Mitchell ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr); 167698ba2d7fSLawrence Mitchell ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr); 16771627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr); 1678f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr); 1679cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr); 1680cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1681a8c5bd36SStefano Zampini if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);} 168270034214SMatthew G. Knepley 1683a157612eSMichael Lange if (overlap > 0) { 168415078cd4SMichael Lange DM dmOverlap; 168557f290daSMatthew G. Knepley PetscInt nroots, nleaves, noldleaves, l; 168657f290daSMatthew G. Knepley const PetscInt *oldLeaves; 168757f290daSMatthew G. Knepley PetscSFNode *newRemote, *permRemote; 168815078cd4SMichael Lange const PetscSFNode *oldRemote; 168915078cd4SMichael Lange PetscSF sfOverlap, sfOverlapPoint; 1690524e35f8SStefano Zampini 1691a157612eSMichael Lange /* Add the partition overlap to the distributed DM */ 1692b9f40539SMichael Lange ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr); 1693a157612eSMichael Lange ierr = DMDestroy(dmParallel);CHKERRQ(ierr); 1694a157612eSMichael Lange *dmParallel = dmOverlap; 1695c389ea9fSToby Isaac if (flg) { 16963d822a50SMichael Lange ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr); 169715078cd4SMichael Lange ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr); 1698c389ea9fSToby Isaac } 169943331d4aSMichael Lange 1700f8987ae8SMichael Lange /* Re-map the migration SF to establish the full migration pattern */ 170157f290daSMatthew G. Knepley ierr = PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote);CHKERRQ(ierr); 170215078cd4SMichael Lange ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr); 170343331d4aSMichael Lange ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr); 170457f290daSMatthew G. Knepley /* oldRemote: original root point mapping to original leaf point 170557f290daSMatthew G. Knepley newRemote: original leaf point mapping to overlapped leaf point */ 170657f290daSMatthew G. Knepley if (oldLeaves) { 170773e69a6aSMatthew G. Knepley /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */ 170873e69a6aSMatthew G. Knepley ierr = PetscMalloc1(noldleaves, &permRemote);CHKERRQ(ierr); 170957f290daSMatthew G. Knepley for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l]; 171057f290daSMatthew G. Knepley oldRemote = permRemote; 171157f290daSMatthew G. Knepley } 171215078cd4SMichael Lange ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 171315078cd4SMichael Lange ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr); 171457f290daSMatthew G. Knepley if (oldLeaves) {ierr = PetscFree(oldRemote);CHKERRQ(ierr);} 171515078cd4SMichael Lange ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr); 171615078cd4SMichael Lange ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr); 171715078cd4SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1718f8987ae8SMichael Lange ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr); 171915078cd4SMichael Lange sfMigration = sfOverlapPoint; 1720c389ea9fSToby Isaac } 1721bf5244c7SMatthew G. Knepley /* Cleanup Partition */ 1722f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr); 1723f8987ae8SMichael Lange ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr); 17244eca1733SMichael Lange ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr); 17254eca1733SMichael Lange ierr = ISDestroy(&cellPart);CHKERRQ(ierr); 1726721cbd76SMatthew G. Knepley /* Copy BC */ 1727a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr); 172866fe0bfeSMatthew G. Knepley /* Create sfNatural */ 172966fe0bfeSMatthew G. Knepley if (dm->useNatural) { 173066fe0bfeSMatthew G. Knepley PetscSection section; 173166fe0bfeSMatthew G. Knepley 173292fd8e1eSJed Brown ierr = DMGetLocalSection(dm, §ion);CHKERRQ(ierr); 17330c1f158bSMatthew G. Knepley ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr); 17340e663481SBlaise Bourdin ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr); 173566fe0bfeSMatthew G. Knepley } 1736721cbd76SMatthew G. Knepley /* Cleanup */ 1737f8987ae8SMichael Lange if (sf) {*sf = sfMigration;} 1738f8987ae8SMichael Lange else {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);} 1739f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 174070034214SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr); 174170034214SMatthew G. Knepley PetscFunctionReturn(0); 174270034214SMatthew G. Knepley } 1743a157612eSMichael Lange 1744a157612eSMichael Lange /*@C 174524cc2ca5SMatthew G. Knepley DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM. 1746a157612eSMichael Lange 1747d083f849SBarry Smith Collective on dm 1748a157612eSMichael Lange 1749064ec1f3Sprj- Input Parameters: 1750064ec1f3Sprj- + dm - The non-overlapping distributed DMPlex object 175157fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks) 1752a157612eSMichael Lange 1753064ec1f3Sprj- Output Parameters: 1754a157612eSMichael Lange + sf - The PetscSF used for point distribution 1755a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL 1756a157612eSMichael Lange 1757dccdeccaSVaclav Hapla Notes: 1758dccdeccaSVaclav Hapla If the mesh was not distributed, the return value is NULL. 1759a157612eSMichael Lange 1760b0441da4SMatthew G. Knepley The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function 1761a157612eSMichael Lange representation on the mesh. 1762a157612eSMichael Lange 1763dccdeccaSVaclav Hapla Level: advanced 1764a157612eSMichael Lange 1765cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexDistribute(), DMPlexCreateOverlapLabel(), DMPlexGetOverlap() 1766a157612eSMichael Lange @*/ 1767b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap) 1768a157612eSMichael Lange { 1769a157612eSMichael Lange MPI_Comm comm; 17703567eaeeSMatthew G. Knepley PetscMPIInt size, rank; 1771a157612eSMichael Lange PetscSection rootSection, leafSection; 1772a157612eSMichael Lange IS rootrank, leafrank; 1773cf86098cSMatthew G. Knepley DM dmCoord; 1774a9f1d5b2SMichael Lange DMLabel lblOverlap; 1775f5bf2dbfSMichael Lange PetscSF sfOverlap, sfStratified, sfPoint; 1776a157612eSMichael Lange PetscErrorCode ierr; 1777a157612eSMichael Lange 1778a157612eSMichael Lange PetscFunctionBegin; 1779a157612eSMichael Lange PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 178057fe9a49SVaclav Hapla PetscValidLogicalCollectiveInt(dm, overlap, 2); 1781a157612eSMichael Lange if (sf) PetscValidPointer(sf, 3); 1782a157612eSMichael Lange PetscValidPointer(dmOverlap, 4); 1783a157612eSMichael Lange 17840c86c063SLisandro Dalcin if (sf) *sf = NULL; 17850c86c063SLisandro Dalcin *dmOverlap = NULL; 1786a157612eSMichael Lange ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 1787*ffc4695bSBarry Smith ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); 1788*ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); 17890c86c063SLisandro Dalcin if (size == 1) PetscFunctionReturn(0); 1790a157612eSMichael Lange 17910c86c063SLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1792a157612eSMichael Lange /* Compute point overlap with neighbouring processes on the distributed DM */ 179367eb269bSLisandro Dalcin ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1794a157612eSMichael Lange ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr); 1795a157612eSMichael Lange ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr); 1796a157612eSMichael Lange ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr); 1797dccdeccaSVaclav Hapla ierr = DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr); 1798a9f1d5b2SMichael Lange /* Convert overlap label to stratified migration SF */ 1799a9f1d5b2SMichael Lange ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr); 1800a9f1d5b2SMichael Lange ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr); 1801a9f1d5b2SMichael Lange ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr); 1802a9f1d5b2SMichael Lange sfOverlap = sfStratified; 1803a9f1d5b2SMichael Lange ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr); 1804a9f1d5b2SMichael Lange ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr); 1805a9f1d5b2SMichael Lange 180615fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr); 180715fff7beSMatthew G. Knepley ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr); 180815fff7beSMatthew G. Knepley ierr = ISDestroy(&rootrank);CHKERRQ(ierr); 180915fff7beSMatthew G. Knepley ierr = ISDestroy(&leafrank);CHKERRQ(ierr); 181067eb269bSLisandro Dalcin ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr); 1811a157612eSMichael Lange 1812a157612eSMichael Lange /* Build the overlapping DM */ 1813a157612eSMichael Lange ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr); 1814a157612eSMichael Lange ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr); 1815a9f1d5b2SMichael Lange ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr); 1816cb54e036SVaclav Hapla /* Store the overlap in the new DM */ 1817cb54e036SVaclav Hapla ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap; 1818f5bf2dbfSMichael Lange /* Build the new point SF */ 18191627f6ccSMichael Lange ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 1820f5bf2dbfSMichael Lange ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr); 1821cf86098cSMatthew G. Knepley ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr); 1822cf86098cSMatthew G. Knepley if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 1823f5bf2dbfSMichael Lange ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1824a157612eSMichael Lange /* Cleanup overlap partition */ 1825a9f1d5b2SMichael Lange ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr); 1826a9f1d5b2SMichael Lange if (sf) *sf = sfOverlap; 1827a9f1d5b2SMichael Lange else {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);} 18281b858b30SMichael Lange ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr); 1829a157612eSMichael Lange PetscFunctionReturn(0); 1830a157612eSMichael Lange } 18316462276dSToby Isaac 1832cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap) 1833cb54e036SVaclav Hapla { 1834cb54e036SVaclav Hapla DM_Plex *mesh = (DM_Plex*) dm->data; 1835cb54e036SVaclav Hapla 1836cb54e036SVaclav Hapla PetscFunctionBegin; 1837cb54e036SVaclav Hapla *overlap = mesh->overlap; 1838cb54e036SVaclav Hapla PetscFunctionReturn(0); 1839cb54e036SVaclav Hapla } 1840cb54e036SVaclav Hapla 1841cb54e036SVaclav Hapla /*@ 1842cb54e036SVaclav Hapla DMPlexGetOverlap - Get the DMPlex partition overlap. 1843cb54e036SVaclav Hapla 1844cb54e036SVaclav Hapla Not collective 1845cb54e036SVaclav Hapla 1846cb54e036SVaclav Hapla Input Parameter: 1847cb54e036SVaclav Hapla . dm - The DM 1848cb54e036SVaclav Hapla 1849064ec1f3Sprj- Output Parameter: 1850cb54e036SVaclav Hapla . overlap - The overlap of this DM 1851cb54e036SVaclav Hapla 1852cb54e036SVaclav Hapla Level: intermediate 1853cb54e036SVaclav Hapla 1854cb54e036SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexDistributeOverlap(), DMPlexCreateOverlapLabel() 1855cb54e036SVaclav Hapla @*/ 1856cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap) 1857cb54e036SVaclav Hapla { 1858cb54e036SVaclav Hapla PetscErrorCode ierr; 1859cb54e036SVaclav Hapla 1860cb54e036SVaclav Hapla PetscFunctionBegin; 1861cb54e036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1862cb54e036SVaclav Hapla ierr = PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));CHKERRQ(ierr); 1863cb54e036SVaclav Hapla PetscFunctionReturn(0); 1864cb54e036SVaclav Hapla } 1865cb54e036SVaclav Hapla 1866cb54e036SVaclav Hapla 18676462276dSToby Isaac /*@C 18686462276dSToby Isaac DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the 18696462276dSToby Isaac root process of the original's communicator. 18706462276dSToby Isaac 1871d083f849SBarry Smith Collective on dm 187283655b49SVáclav Hapla 1873064ec1f3Sprj- Input Parameter: 18746462276dSToby Isaac . dm - the original DMPlex object 18756462276dSToby Isaac 18766462276dSToby Isaac Output Parameters: 1877a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1878a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL 18796462276dSToby Isaac 18806462276dSToby Isaac Level: intermediate 18816462276dSToby Isaac 18826462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM() 18836462276dSToby Isaac @*/ 1884a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh) 18856462276dSToby Isaac { 18866462276dSToby Isaac MPI_Comm comm; 18876462276dSToby Isaac PetscMPIInt size; 18886462276dSToby Isaac PetscPartitioner oldPart, gatherPart; 18896462276dSToby Isaac PetscErrorCode ierr; 18906462276dSToby Isaac 18916462276dSToby Isaac PetscFunctionBegin; 18926462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 18930c86c063SLisandro Dalcin PetscValidPointer(gatherMesh,2); 18940c86c063SLisandro Dalcin *gatherMesh = NULL; 1895a13df41bSStefano Zampini if (sf) *sf = NULL; 18966462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 1897*ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 18986462276dSToby Isaac if (size == 1) PetscFunctionReturn(0); 18996462276dSToby Isaac ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr); 19006462276dSToby Isaac ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr); 19016462276dSToby Isaac ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr); 19026462276dSToby Isaac ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr); 19036462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr); 1904a13df41bSStefano Zampini ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr); 1905a13df41bSStefano Zampini 19066462276dSToby Isaac ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr); 19076462276dSToby Isaac ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr); 19086462276dSToby Isaac ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr); 19096462276dSToby Isaac PetscFunctionReturn(0); 19106462276dSToby Isaac } 19116462276dSToby Isaac 19126462276dSToby Isaac /*@C 19136462276dSToby Isaac DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process. 19146462276dSToby Isaac 1915d083f849SBarry Smith Collective on dm 191683655b49SVáclav Hapla 1917064ec1f3Sprj- Input Parameter: 19186462276dSToby Isaac . dm - the original DMPlex object 19196462276dSToby Isaac 19206462276dSToby Isaac Output Parameters: 1921a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional) 1922a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL 19236462276dSToby Isaac 19246462276dSToby Isaac Level: intermediate 19256462276dSToby Isaac 19266462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM() 19276462276dSToby Isaac @*/ 1928a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh) 19296462276dSToby Isaac { 19306462276dSToby Isaac MPI_Comm comm; 19316462276dSToby Isaac PetscMPIInt size, rank; 19326462276dSToby Isaac PetscInt pStart, pEnd, p; 19336462276dSToby Isaac PetscInt numPoints = -1; 1934a13df41bSStefano Zampini PetscSF migrationSF, sfPoint, gatherSF; 19356462276dSToby Isaac DM gatherDM, dmCoord; 19366462276dSToby Isaac PetscSFNode *points; 19376462276dSToby Isaac PetscErrorCode ierr; 19386462276dSToby Isaac 19396462276dSToby Isaac PetscFunctionBegin; 19406462276dSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 19410c86c063SLisandro Dalcin PetscValidPointer(redundantMesh,2); 19420c86c063SLisandro Dalcin *redundantMesh = NULL; 19436462276dSToby Isaac comm = PetscObjectComm((PetscObject)dm); 1944*ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 194568dbc166SMatthew G. Knepley if (size == 1) { 194668dbc166SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 194768dbc166SMatthew G. Knepley *redundantMesh = dm; 1948a13df41bSStefano Zampini if (sf) *sf = NULL; 194968dbc166SMatthew G. Knepley PetscFunctionReturn(0); 195068dbc166SMatthew G. Knepley } 1951a13df41bSStefano Zampini ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr); 19526462276dSToby Isaac if (!gatherDM) PetscFunctionReturn(0); 1953*ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 19546462276dSToby Isaac ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr); 19556462276dSToby Isaac numPoints = pEnd - pStart; 1956*ffc4695bSBarry Smith ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRMPI(ierr); 19576462276dSToby Isaac ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr); 19586462276dSToby Isaac ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr); 19596462276dSToby Isaac for (p = 0; p < numPoints; p++) { 19606462276dSToby Isaac points[p].index = p; 19616462276dSToby Isaac points[p].rank = 0; 19626462276dSToby Isaac } 19636462276dSToby Isaac ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr); 19646462276dSToby Isaac ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr); 19656462276dSToby Isaac ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr); 19666462276dSToby Isaac ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr); 19676462276dSToby Isaac ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr); 19686462276dSToby Isaac ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr); 19696462276dSToby Isaac ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr); 19706462276dSToby Isaac if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);} 19716462276dSToby Isaac ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr); 1972a13df41bSStefano Zampini if (sf) { 1973a13df41bSStefano Zampini PetscSF tsf; 1974a13df41bSStefano Zampini 1975a13df41bSStefano Zampini ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr); 1976a13df41bSStefano Zampini ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr); 1977a13df41bSStefano Zampini ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr); 1978a13df41bSStefano Zampini } 19796462276dSToby Isaac ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr); 1980a13df41bSStefano Zampini ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr); 19816462276dSToby Isaac ierr = DMDestroy(&gatherDM);CHKERRQ(ierr); 19826462276dSToby Isaac PetscFunctionReturn(0); 19836462276dSToby Isaac } 19845fa78c88SVaclav Hapla 19855fa78c88SVaclav Hapla /*@ 19865fa78c88SVaclav Hapla DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points. 19875fa78c88SVaclav Hapla 19885fa78c88SVaclav Hapla Collective 19895fa78c88SVaclav Hapla 19905fa78c88SVaclav Hapla Input Parameter: 19915fa78c88SVaclav Hapla . dm - The DM object 19925fa78c88SVaclav Hapla 19935fa78c88SVaclav Hapla Output Parameter: 19945fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed 19955fa78c88SVaclav Hapla 19965fa78c88SVaclav Hapla Level: intermediate 19975fa78c88SVaclav Hapla 19985fa78c88SVaclav Hapla Notes: 19995fa78c88SVaclav Hapla This currently finds out whether at least two ranks have any DAG points. 20005fa78c88SVaclav Hapla This involves MPI_Allreduce() with one integer. 20015fa78c88SVaclav Hapla The result is currently not stashed so every call to this routine involves this global communication. 20025fa78c88SVaclav Hapla 20035fa78c88SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexGetOverlap(), DMPlexIsInterpolated() 20045fa78c88SVaclav Hapla @*/ 20055fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed) 20065fa78c88SVaclav Hapla { 20075fa78c88SVaclav Hapla PetscInt pStart, pEnd, count; 20085fa78c88SVaclav Hapla MPI_Comm comm; 20095fa78c88SVaclav Hapla PetscErrorCode ierr; 20105fa78c88SVaclav Hapla 20115fa78c88SVaclav Hapla PetscFunctionBegin; 20125fa78c88SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20135fa78c88SVaclav Hapla PetscValidPointer(distributed,2); 20145fa78c88SVaclav Hapla ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 20155fa78c88SVaclav Hapla ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 20165fa78c88SVaclav Hapla count = !!(pEnd - pStart); 2017*ffc4695bSBarry Smith ierr = MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm);CHKERRMPI(ierr); 20185fa78c88SVaclav Hapla *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE; 20195fa78c88SVaclav Hapla PetscFunctionReturn(0); 20205fa78c88SVaclav Hapla } 2021