xref: /petsc/src/dm/impls/plex/plexdistribute.c (revision ffc4695bcb29f4b022f59a5fd6bc99fc280ff6d8)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>    /*I      "petscdmplex.h"   I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h>   /*I      "petscdmlabel.h"  I*/
370034214SMatthew G. Knepley 
43c1f0c11SLawrence Mitchell /*@C
53c1f0c11SLawrence Mitchell   DMPlexSetAdjacencyUser - Define adjacency in the mesh using a user-provided callback
63c1f0c11SLawrence Mitchell 
73c1f0c11SLawrence Mitchell   Input Parameters:
83c1f0c11SLawrence Mitchell + dm      - The DM object
93c1f0c11SLawrence Mitchell . user    - The user callback, may be NULL (to clear the callback)
103c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation, may be NULL
113c1f0c11SLawrence Mitchell 
123c1f0c11SLawrence Mitchell   Level: advanced
133c1f0c11SLawrence Mitchell 
143c1f0c11SLawrence Mitchell   Notes:
153c1f0c11SLawrence Mitchell      The caller of DMPlexGetAdjacency may need to arrange that a large enough array is available for the adjacency.
163c1f0c11SLawrence Mitchell 
173c1f0c11SLawrence Mitchell      Any setting here overrides other configuration of DMPlex adjacency determination.
183c1f0c11SLawrence Mitchell 
19b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexGetAdjacencyUser()
203c1f0c11SLawrence Mitchell @*/
213c1f0c11SLawrence Mitchell PetscErrorCode DMPlexSetAdjacencyUser(DM dm,PetscErrorCode (*user)(DM,PetscInt,PetscInt*,PetscInt[],void*),void *ctx)
223c1f0c11SLawrence Mitchell {
233c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
243c1f0c11SLawrence Mitchell 
253c1f0c11SLawrence Mitchell   PetscFunctionBegin;
263c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
273c1f0c11SLawrence Mitchell   mesh->useradjacency = user;
283c1f0c11SLawrence Mitchell   mesh->useradjacencyctx = ctx;
293c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
303c1f0c11SLawrence Mitchell }
313c1f0c11SLawrence Mitchell 
323c1f0c11SLawrence Mitchell /*@C
333c1f0c11SLawrence Mitchell   DMPlexGetAdjacencyUser - get the user-defined adjacency callback
343c1f0c11SLawrence Mitchell 
353c1f0c11SLawrence Mitchell   Input Parameter:
363c1f0c11SLawrence Mitchell . dm      - The DM object
373c1f0c11SLawrence Mitchell 
383c1f0c11SLawrence Mitchell   Output Parameters:
393c1f0c11SLawrence Mitchell - user    - The user callback
403c1f0c11SLawrence Mitchell - ctx     - context for callback evaluation
413c1f0c11SLawrence Mitchell 
423c1f0c11SLawrence Mitchell   Level: advanced
433c1f0c11SLawrence Mitchell 
44b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexGetAdjacency(), DMPlexSetAdjacencyUser()
453c1f0c11SLawrence Mitchell @*/
463c1f0c11SLawrence Mitchell PetscErrorCode DMPlexGetAdjacencyUser(DM dm, PetscErrorCode (**user)(DM,PetscInt,PetscInt*,PetscInt[],void*), void **ctx)
473c1f0c11SLawrence Mitchell {
483c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
493c1f0c11SLawrence Mitchell 
503c1f0c11SLawrence Mitchell   PetscFunctionBegin;
513c1f0c11SLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523c1f0c11SLawrence Mitchell   if (user) *user = mesh->useradjacency;
533c1f0c11SLawrence Mitchell   if (ctx) *ctx = mesh->useradjacencyctx;
543c1f0c11SLawrence Mitchell   PetscFunctionReturn(0);
553c1f0c11SLawrence Mitchell }
563c1f0c11SLawrence Mitchell 
5770034214SMatthew G. Knepley /*@
58a17985deSToby Isaac   DMPlexSetAdjacencyUseAnchors - Define adjacency in the mesh using the point-to-point constraints.
598b0b4c70SToby Isaac 
608b0b4c70SToby Isaac   Input Parameters:
618b0b4c70SToby Isaac + dm      - The DM object
625b317d89SToby Isaac - useAnchors - Flag to use the constraints.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
638b0b4c70SToby Isaac 
648b0b4c70SToby Isaac   Level: intermediate
658b0b4c70SToby Isaac 
66b0441da4SMatthew G. Knepley .seealso: DMGetAdjacency(), DMSetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
678b0b4c70SToby Isaac @*/
685b317d89SToby Isaac PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM dm, PetscBool useAnchors)
698b0b4c70SToby Isaac {
708b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
718b0b4c70SToby Isaac 
728b0b4c70SToby Isaac   PetscFunctionBegin;
738b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
745b317d89SToby Isaac   mesh->useAnchors = useAnchors;
758b0b4c70SToby Isaac   PetscFunctionReturn(0);
768b0b4c70SToby Isaac }
778b0b4c70SToby Isaac 
788b0b4c70SToby Isaac /*@
79a17985deSToby Isaac   DMPlexGetAdjacencyUseAnchors - Query whether adjacency in the mesh uses the point-to-point constraints.
808b0b4c70SToby Isaac 
818b0b4c70SToby Isaac   Input Parameter:
828b0b4c70SToby Isaac . dm      - The DM object
838b0b4c70SToby Isaac 
848b0b4c70SToby Isaac   Output Parameter:
855b317d89SToby Isaac . useAnchors - Flag to use the closure.  If PETSC_TRUE, then constrained points are omitted from DMPlexGetAdjacency(), and their anchor points appear in their place.
868b0b4c70SToby Isaac 
878b0b4c70SToby Isaac   Level: intermediate
888b0b4c70SToby Isaac 
89b0441da4SMatthew G. Knepley .seealso: DMPlexSetAdjacencyUseAnchors(), DMSetAdjacency(), DMGetAdjacency(), DMPlexDistribute(), DMPlexPreallocateOperator(), DMPlexSetAnchors()
908b0b4c70SToby Isaac @*/
915b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM dm, PetscBool *useAnchors)
928b0b4c70SToby Isaac {
938b0b4c70SToby Isaac   DM_Plex *mesh = (DM_Plex *) dm->data;
948b0b4c70SToby Isaac 
958b0b4c70SToby Isaac   PetscFunctionBegin;
968b0b4c70SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
975b317d89SToby Isaac   PetscValidIntPointer(useAnchors, 2);
985b317d89SToby Isaac   *useAnchors = mesh->useAnchors;
998b0b4c70SToby Isaac   PetscFunctionReturn(0);
1008b0b4c70SToby Isaac }
1018b0b4c70SToby Isaac 
10270034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Cone_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
10370034214SMatthew G. Knepley {
10470034214SMatthew G. Knepley   const PetscInt *cone = NULL;
10570034214SMatthew G. Knepley   PetscInt        numAdj = 0, maxAdjSize = *adjSize, coneSize, c;
10670034214SMatthew G. Knepley   PetscErrorCode  ierr;
10770034214SMatthew G. Knepley 
10870034214SMatthew G. Knepley   PetscFunctionBeginHot;
10970034214SMatthew G. Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
11070034214SMatthew G. Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
1114b6b44bdSMatthew G. Knepley   for (c = 0; c <= coneSize; ++c) {
1124b6b44bdSMatthew G. Knepley     const PetscInt  point   = !c ? p : cone[c-1];
11370034214SMatthew G. Knepley     const PetscInt *support = NULL;
11470034214SMatthew G. Knepley     PetscInt        supportSize, s, q;
11570034214SMatthew G. Knepley 
1164b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr);
1174b6b44bdSMatthew G. Knepley     ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr);
11870034214SMatthew G. Knepley     for (s = 0; s < supportSize; ++s) {
119527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = support[s]),0); ++q) {
12070034214SMatthew G. Knepley         if (support[s] == adj[q]) break;
12170034214SMatthew G. Knepley       }
12270034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
12370034214SMatthew G. Knepley     }
12470034214SMatthew G. Knepley   }
12570034214SMatthew G. Knepley   *adjSize = numAdj;
12670034214SMatthew G. Knepley   PetscFunctionReturn(0);
12770034214SMatthew G. Knepley }
12870034214SMatthew G. Knepley 
12970034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Support_Internal(DM dm, PetscInt p, PetscInt *adjSize, PetscInt adj[])
13070034214SMatthew G. Knepley {
13170034214SMatthew G. Knepley   const PetscInt *support = NULL;
13270034214SMatthew G. Knepley   PetscInt        numAdj   = 0, maxAdjSize = *adjSize, supportSize, s;
13370034214SMatthew G. Knepley   PetscErrorCode  ierr;
13470034214SMatthew G. Knepley 
13570034214SMatthew G. Knepley   PetscFunctionBeginHot;
13670034214SMatthew G. Knepley   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
13770034214SMatthew G. Knepley   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
1384b6b44bdSMatthew G. Knepley   for (s = 0; s <= supportSize; ++s) {
1394b6b44bdSMatthew G. Knepley     const PetscInt  point = !s ? p : support[s-1];
14070034214SMatthew G. Knepley     const PetscInt *cone  = NULL;
14170034214SMatthew G. Knepley     PetscInt        coneSize, c, q;
14270034214SMatthew G. Knepley 
1434b6b44bdSMatthew G. Knepley     ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr);
1444b6b44bdSMatthew G. Knepley     ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr);
14570034214SMatthew G. Knepley     for (c = 0; c < coneSize; ++c) {
146527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = cone[c]),0); ++q) {
14770034214SMatthew G. Knepley         if (cone[c] == adj[q]) break;
14870034214SMatthew G. Knepley       }
14970034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
15070034214SMatthew G. Knepley     }
15170034214SMatthew G. Knepley   }
15270034214SMatthew G. Knepley   *adjSize = numAdj;
15370034214SMatthew G. Knepley   PetscFunctionReturn(0);
15470034214SMatthew G. Knepley }
15570034214SMatthew G. Knepley 
15670034214SMatthew G. Knepley static PetscErrorCode DMPlexGetAdjacency_Transitive_Internal(DM dm, PetscInt p, PetscBool useClosure, PetscInt *adjSize, PetscInt adj[])
15770034214SMatthew G. Knepley {
15870034214SMatthew G. Knepley   PetscInt      *star = NULL;
15970034214SMatthew G. Knepley   PetscInt       numAdj = 0, maxAdjSize = *adjSize, starSize, s;
16070034214SMatthew G. Knepley   PetscErrorCode ierr;
16170034214SMatthew G. Knepley 
16270034214SMatthew G. Knepley   PetscFunctionBeginHot;
16370034214SMatthew G. Knepley   ierr = DMPlexGetTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
16470034214SMatthew G. Knepley   for (s = 0; s < starSize*2; s += 2) {
16570034214SMatthew G. Knepley     const PetscInt *closure = NULL;
16670034214SMatthew G. Knepley     PetscInt        closureSize, c, q;
16770034214SMatthew G. Knepley 
16870034214SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
16970034214SMatthew G. Knepley     for (c = 0; c < closureSize*2; c += 2) {
170527e7439SSatish Balay       for (q = 0; q < numAdj || ((void)(adj[numAdj++] = closure[c]),0); ++q) {
17170034214SMatthew G. Knepley         if (closure[c] == adj[q]) break;
17270034214SMatthew G. Knepley       }
17370034214SMatthew G. Knepley       if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
17470034214SMatthew G. Knepley     }
17570034214SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, star[s], (PetscBool)!useClosure, &closureSize, (PetscInt**) &closure);CHKERRQ(ierr);
17670034214SMatthew G. Knepley   }
17770034214SMatthew G. Knepley   ierr = DMPlexRestoreTransitiveClosure(dm, p, useClosure, &starSize, &star);CHKERRQ(ierr);
17870034214SMatthew G. Knepley   *adjSize = numAdj;
17970034214SMatthew G. Knepley   PetscFunctionReturn(0);
18070034214SMatthew G. Knepley }
18170034214SMatthew G. Knepley 
1825b317d89SToby Isaac PetscErrorCode DMPlexGetAdjacency_Internal(DM dm, PetscInt p, PetscBool useCone, PetscBool useTransitiveClosure, PetscBool useAnchors, PetscInt *adjSize, PetscInt *adj[])
18370034214SMatthew G. Knepley {
18479bad331SMatthew G. Knepley   static PetscInt asiz = 0;
1858b0b4c70SToby Isaac   PetscInt maxAnchors = 1;
1868b0b4c70SToby Isaac   PetscInt aStart = -1, aEnd = -1;
1878b0b4c70SToby Isaac   PetscInt maxAdjSize;
1888b0b4c70SToby Isaac   PetscSection aSec = NULL;
1898b0b4c70SToby Isaac   IS aIS = NULL;
1908b0b4c70SToby Isaac   const PetscInt *anchors;
1913c1f0c11SLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
19270034214SMatthew G. Knepley   PetscErrorCode  ierr;
19370034214SMatthew G. Knepley 
19470034214SMatthew G. Knepley   PetscFunctionBeginHot;
1955b317d89SToby Isaac   if (useAnchors) {
196a17985deSToby Isaac     ierr = DMPlexGetAnchors(dm,&aSec,&aIS);CHKERRQ(ierr);
1978b0b4c70SToby Isaac     if (aSec) {
1988b0b4c70SToby Isaac       ierr = PetscSectionGetMaxDof(aSec,&maxAnchors);CHKERRQ(ierr);
19924c766afSToby Isaac       maxAnchors = PetscMax(1,maxAnchors);
2008b0b4c70SToby Isaac       ierr = PetscSectionGetChart(aSec,&aStart,&aEnd);CHKERRQ(ierr);
2018b0b4c70SToby Isaac       ierr = ISGetIndices(aIS,&anchors);CHKERRQ(ierr);
2028b0b4c70SToby Isaac     }
2038b0b4c70SToby Isaac   }
20479bad331SMatthew G. Knepley   if (!*adj) {
20524c766afSToby Isaac     PetscInt depth, coneSeries, supportSeries, maxC, maxS, pStart, pEnd;
20679bad331SMatthew G. Knepley 
20724c766afSToby Isaac     ierr  = DMPlexGetChart(dm, &pStart,&pEnd);CHKERRQ(ierr);
20879bad331SMatthew G. Knepley     ierr  = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
209412e9a14SMatthew G. Knepley     depth = PetscMax(depth, -depth);
21024c766afSToby Isaac     ierr  = DMPlexGetMaxSizes(dm, &maxC, &maxS);CHKERRQ(ierr);
21124c766afSToby Isaac     coneSeries    = (maxC > 1) ? ((PetscPowInt(maxC,depth+1)-1)/(maxC-1)) : depth+1;
21224c766afSToby Isaac     supportSeries = (maxS > 1) ? ((PetscPowInt(maxS,depth+1)-1)/(maxS-1)) : depth+1;
21324c766afSToby Isaac     asiz  = PetscMax(PetscPowInt(maxS,depth)*coneSeries,PetscPowInt(maxC,depth)*supportSeries);
2148b0b4c70SToby Isaac     asiz *= maxAnchors;
21524c766afSToby Isaac     asiz  = PetscMin(asiz,pEnd-pStart);
21679bad331SMatthew G. Knepley     ierr  = PetscMalloc1(asiz,adj);CHKERRQ(ierr);
21779bad331SMatthew G. Knepley   }
21879bad331SMatthew G. Knepley   if (*adjSize < 0) *adjSize = asiz;
2198b0b4c70SToby Isaac   maxAdjSize = *adjSize;
2203c1f0c11SLawrence Mitchell   if (mesh->useradjacency) {
22162f17a49SStefano Zampini     ierr = (*mesh->useradjacency)(dm, p, adjSize, *adj, mesh->useradjacencyctx);CHKERRQ(ierr);
2223c1f0c11SLawrence Mitchell   } else if (useTransitiveClosure) {
22379bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Transitive_Internal(dm, p, useCone, adjSize, *adj);CHKERRQ(ierr);
22470034214SMatthew G. Knepley   } else if (useCone) {
22579bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Cone_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22670034214SMatthew G. Knepley   } else {
22779bad331SMatthew G. Knepley     ierr = DMPlexGetAdjacency_Support_Internal(dm, p, adjSize, *adj);CHKERRQ(ierr);
22870034214SMatthew G. Knepley   }
2295b317d89SToby Isaac   if (useAnchors && aSec) {
2308b0b4c70SToby Isaac     PetscInt origSize = *adjSize;
2318b0b4c70SToby Isaac     PetscInt numAdj = origSize;
2328b0b4c70SToby Isaac     PetscInt i = 0, j;
2338b0b4c70SToby Isaac     PetscInt *orig = *adj;
2348b0b4c70SToby Isaac 
2358b0b4c70SToby Isaac     while (i < origSize) {
2368b0b4c70SToby Isaac       PetscInt p = orig[i];
2378b0b4c70SToby Isaac       PetscInt aDof = 0;
2388b0b4c70SToby Isaac 
2398b0b4c70SToby Isaac       if (p >= aStart && p < aEnd) {
2408b0b4c70SToby Isaac         ierr = PetscSectionGetDof(aSec,p,&aDof);CHKERRQ(ierr);
2418b0b4c70SToby Isaac       }
2428b0b4c70SToby Isaac       if (aDof) {
2438b0b4c70SToby Isaac         PetscInt aOff;
2448b0b4c70SToby Isaac         PetscInt s, q;
2458b0b4c70SToby Isaac 
2468b0b4c70SToby Isaac         for (j = i + 1; j < numAdj; j++) {
2478b0b4c70SToby Isaac           orig[j - 1] = orig[j];
2488b0b4c70SToby Isaac         }
2498b0b4c70SToby Isaac         origSize--;
2508b0b4c70SToby Isaac         numAdj--;
2518b0b4c70SToby Isaac         ierr = PetscSectionGetOffset(aSec,p,&aOff);CHKERRQ(ierr);
2528b0b4c70SToby Isaac         for (s = 0; s < aDof; ++s) {
253527e7439SSatish Balay           for (q = 0; q < numAdj || ((void)(orig[numAdj++] = anchors[aOff+s]),0); ++q) {
2548b0b4c70SToby Isaac             if (anchors[aOff+s] == orig[q]) break;
2558b0b4c70SToby Isaac           }
2568b0b4c70SToby Isaac           if (numAdj > maxAdjSize) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid mesh exceeded adjacency allocation (%D)", maxAdjSize);
2578b0b4c70SToby Isaac         }
2588b0b4c70SToby Isaac       }
2598b0b4c70SToby Isaac       else {
2608b0b4c70SToby Isaac         i++;
2618b0b4c70SToby Isaac       }
2628b0b4c70SToby Isaac     }
2638b0b4c70SToby Isaac     *adjSize = numAdj;
2648b0b4c70SToby Isaac     ierr = ISRestoreIndices(aIS,&anchors);CHKERRQ(ierr);
2658b0b4c70SToby Isaac   }
26670034214SMatthew G. Knepley   PetscFunctionReturn(0);
26770034214SMatthew G. Knepley }
26870034214SMatthew G. Knepley 
26970034214SMatthew G. Knepley /*@
27070034214SMatthew G. Knepley   DMPlexGetAdjacency - Return all points adjacent to the given point
27170034214SMatthew G. Knepley 
27270034214SMatthew G. Knepley   Input Parameters:
27370034214SMatthew G. Knepley + dm - The DM object
27470034214SMatthew G. Knepley . p  - The point
27570034214SMatthew G. Knepley . adjSize - The maximum size of adj if it is non-NULL, or PETSC_DETERMINE
27670034214SMatthew G. Knepley - adj - Either NULL so that the array is allocated, or an existing array with size adjSize
27770034214SMatthew G. Knepley 
27870034214SMatthew G. Knepley   Output Parameters:
27970034214SMatthew G. Knepley + adjSize - The number of adjacent points
28070034214SMatthew G. Knepley - adj - The adjacent points
28170034214SMatthew G. Knepley 
28270034214SMatthew G. Knepley   Level: advanced
28370034214SMatthew G. Knepley 
28495452b02SPatrick Sanan   Notes:
28595452b02SPatrick Sanan     The user must PetscFree the adj array if it was not passed in.
28670034214SMatthew G. Knepley 
287b0441da4SMatthew G. Knepley .seealso: DMSetAdjacency(), DMPlexDistribute(), DMCreateMatrix(), DMPlexPreallocateOperator()
28870034214SMatthew G. Knepley @*/
28970034214SMatthew G. Knepley PetscErrorCode DMPlexGetAdjacency(DM dm, PetscInt p, PetscInt *adjSize, PetscInt *adj[])
29070034214SMatthew G. Knepley {
2911cf84007SMatthew G. Knepley   PetscBool      useCone, useClosure, useAnchors;
29270034214SMatthew G. Knepley   PetscErrorCode ierr;
29370034214SMatthew G. Knepley 
29470034214SMatthew G. Knepley   PetscFunctionBeginHot;
29570034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29670034214SMatthew G. Knepley   PetscValidPointer(adjSize,3);
29770034214SMatthew G. Knepley   PetscValidPointer(adj,4);
298b0441da4SMatthew G. Knepley   ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
2991cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
3001cf84007SMatthew G. Knepley   ierr = DMPlexGetAdjacency_Internal(dm, p, useCone, useClosure, useAnchors, adjSize, adj);CHKERRQ(ierr);
30170034214SMatthew G. Knepley   PetscFunctionReturn(0);
30270034214SMatthew G. Knepley }
30308633170SToby Isaac 
304b0a623aaSMatthew G. Knepley /*@
305b0a623aaSMatthew G. Knepley   DMPlexCreateTwoSidedProcessSF - Create an SF which just has process connectivity
306b0a623aaSMatthew G. Knepley 
307d083f849SBarry Smith   Collective on dm
308b0a623aaSMatthew G. Knepley 
309b0a623aaSMatthew G. Knepley   Input Parameters:
310b0a623aaSMatthew G. Knepley + dm      - The DM
311b0a623aaSMatthew G. Knepley - sfPoint - The PetscSF which encodes point connectivity
312b0a623aaSMatthew G. Knepley 
313b0a623aaSMatthew G. Knepley   Output Parameters:
314b0a623aaSMatthew G. Knepley + processRanks - A list of process neighbors, or NULL
315b0a623aaSMatthew G. Knepley - sfProcess    - An SF encoding the two-sided process connectivity, or NULL
316b0a623aaSMatthew G. Knepley 
317b0a623aaSMatthew G. Knepley   Level: developer
318b0a623aaSMatthew G. Knepley 
319b0a623aaSMatthew G. Knepley .seealso: PetscSFCreate(), DMPlexCreateProcessSF()
320b0a623aaSMatthew G. Knepley @*/
321b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM dm, PetscSF sfPoint, PetscSection rootRankSection, IS rootRanks, PetscSection leafRankSection, IS leafRanks, IS *processRanks, PetscSF *sfProcess)
322b0a623aaSMatthew G. Knepley {
323b0a623aaSMatthew G. Knepley   const PetscSFNode *remotePoints;
324b0a623aaSMatthew G. Knepley   PetscInt          *localPointsNew;
325b0a623aaSMatthew G. Knepley   PetscSFNode       *remotePointsNew;
326b0a623aaSMatthew G. Knepley   const PetscInt    *nranks;
327b0a623aaSMatthew G. Knepley   PetscInt          *ranksNew;
328b0a623aaSMatthew G. Knepley   PetscBT            neighbors;
329b0a623aaSMatthew G. Knepley   PetscInt           pStart, pEnd, p, numLeaves, l, numNeighbors, n;
3309852e123SBarry Smith   PetscMPIInt        size, proc, rank;
331b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
332b0a623aaSMatthew G. Knepley 
333b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
334b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
335b0a623aaSMatthew G. Knepley   PetscValidHeaderSpecific(sfPoint, PETSCSF_CLASSID, 2);
336b0a623aaSMatthew G. Knepley   if (processRanks) {PetscValidPointer(processRanks, 3);}
337b0a623aaSMatthew G. Knepley   if (sfProcess)    {PetscValidPointer(sfProcess, 4);}
338*ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr);
339*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr);
340b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, NULL, &remotePoints);CHKERRQ(ierr);
3419852e123SBarry Smith   ierr = PetscBTCreate(size, &neighbors);CHKERRQ(ierr);
3429852e123SBarry Smith   ierr = PetscBTMemzero(size, neighbors);CHKERRQ(ierr);
343b0a623aaSMatthew G. Knepley   /* Compute root-to-leaf process connectivity */
344b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(rootRankSection, &pStart, &pEnd);CHKERRQ(ierr);
345b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootRanks, &nranks);CHKERRQ(ierr);
346b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
347b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
348b0a623aaSMatthew G. Knepley 
349b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootRankSection, p, &ndof);CHKERRQ(ierr);
350b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootRankSection, p, &noff);CHKERRQ(ierr);
351302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
352b0a623aaSMatthew G. Knepley   }
353b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootRanks, &nranks);CHKERRQ(ierr);
354b0a623aaSMatthew G. Knepley   /* Compute leaf-to-neighbor process connectivity */
355b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafRankSection, &pStart, &pEnd);CHKERRQ(ierr);
356b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafRanks, &nranks);CHKERRQ(ierr);
357b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
358b0a623aaSMatthew G. Knepley     PetscInt ndof, noff, n;
359b0a623aaSMatthew G. Knepley 
360b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(leafRankSection, p, &ndof);CHKERRQ(ierr);
361b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(leafRankSection, p, &noff);CHKERRQ(ierr);
362302440fdSBarry Smith     for (n = 0; n < ndof; ++n) {ierr = PetscBTSet(neighbors, nranks[noff+n]);CHKERRQ(ierr);}
363b0a623aaSMatthew G. Knepley   }
364b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafRanks, &nranks);CHKERRQ(ierr);
365b0a623aaSMatthew G. Knepley   /* Compute leaf-to-root process connectivity */
366b0a623aaSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {PetscBTSet(neighbors, remotePoints[l].rank);}
367b0a623aaSMatthew G. Knepley   /* Calculate edges */
368b0a623aaSMatthew G. Knepley   PetscBTClear(neighbors, rank);
3699852e123SBarry Smith   for (proc = 0, numNeighbors = 0; proc < size; ++proc) {if (PetscBTLookup(neighbors, proc)) ++numNeighbors;}
370b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &ranksNew);CHKERRQ(ierr);
371b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &localPointsNew);CHKERRQ(ierr);
372b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(numNeighbors, &remotePointsNew);CHKERRQ(ierr);
3739852e123SBarry Smith   for (proc = 0, n = 0; proc < size; ++proc) {
374b0a623aaSMatthew G. Knepley     if (PetscBTLookup(neighbors, proc)) {
375b0a623aaSMatthew G. Knepley       ranksNew[n]              = proc;
376b0a623aaSMatthew G. Knepley       localPointsNew[n]        = proc;
377b0a623aaSMatthew G. Knepley       remotePointsNew[n].index = rank;
378b0a623aaSMatthew G. Knepley       remotePointsNew[n].rank  = proc;
379b0a623aaSMatthew G. Knepley       ++n;
380b0a623aaSMatthew G. Knepley     }
381b0a623aaSMatthew G. Knepley   }
382b0a623aaSMatthew G. Knepley   ierr = PetscBTDestroy(&neighbors);CHKERRQ(ierr);
383b0a623aaSMatthew G. Knepley   if (processRanks) {ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm), numNeighbors, ranksNew, PETSC_OWN_POINTER, processRanks);CHKERRQ(ierr);}
384b0a623aaSMatthew G. Knepley   else              {ierr = PetscFree(ranksNew);CHKERRQ(ierr);}
385b0a623aaSMatthew G. Knepley   if (sfProcess) {
386b0a623aaSMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject)dm), sfProcess);CHKERRQ(ierr);
387b0a623aaSMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) *sfProcess, "Two-Sided Process SF");CHKERRQ(ierr);
388b0a623aaSMatthew G. Knepley     ierr = PetscSFSetFromOptions(*sfProcess);CHKERRQ(ierr);
3899852e123SBarry Smith     ierr = PetscSFSetGraph(*sfProcess, size, numNeighbors, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
390b0a623aaSMatthew G. Knepley   }
391b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
392b0a623aaSMatthew G. Knepley }
393b0a623aaSMatthew G. Knepley 
394b0a623aaSMatthew G. Knepley /*@
395b0a623aaSMatthew G. Knepley   DMPlexDistributeOwnership - Compute owner information for shared points. This basically gets two-sided for an SF.
396b0a623aaSMatthew G. Knepley 
397d083f849SBarry Smith   Collective on dm
398b0a623aaSMatthew G. Knepley 
399b0a623aaSMatthew G. Knepley   Input Parameter:
400b0a623aaSMatthew G. Knepley . dm - The DM
401b0a623aaSMatthew G. Knepley 
402b0a623aaSMatthew G. Knepley   Output Parameters:
403b0a623aaSMatthew G. Knepley + rootSection - The number of leaves for a given root point
404b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
405b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
406b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
407b0a623aaSMatthew G. Knepley 
408b0a623aaSMatthew G. Knepley   Level: developer
409b0a623aaSMatthew G. Knepley 
410dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistribute(), DMPlexDistributeOverlap()
411b0a623aaSMatthew G. Knepley @*/
412b0a623aaSMatthew G. Knepley PetscErrorCode DMPlexDistributeOwnership(DM dm, PetscSection rootSection, IS *rootrank, PetscSection leafSection, IS *leafrank)
413b0a623aaSMatthew G. Knepley {
414b0a623aaSMatthew G. Knepley   MPI_Comm        comm;
415b0a623aaSMatthew G. Knepley   PetscSF         sfPoint;
416b0a623aaSMatthew G. Knepley   const PetscInt *rootdegree;
417b0a623aaSMatthew G. Knepley   PetscInt       *myrank, *remoterank;
418b0a623aaSMatthew G. Knepley   PetscInt        pStart, pEnd, p, nedges;
419b0a623aaSMatthew G. Knepley   PetscMPIInt     rank;
420b0a623aaSMatthew G. Knepley   PetscErrorCode  ierr;
421b0a623aaSMatthew G. Knepley 
422b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
423b0a623aaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
424*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
425b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
426b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
427b0a623aaSMatthew G. Knepley   /* Compute number of leaves for each root */
428b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) rootSection, "Root Section");CHKERRQ(ierr);
429b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetChart(rootSection, pStart, pEnd);CHKERRQ(ierr);
430b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeBegin(sfPoint, &rootdegree);CHKERRQ(ierr);
431b0a623aaSMatthew G. Knepley   ierr = PetscSFComputeDegreeEnd(sfPoint, &rootdegree);CHKERRQ(ierr);
432b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {ierr = PetscSectionSetDof(rootSection, p, rootdegree[p-pStart]);CHKERRQ(ierr);}
433b0a623aaSMatthew G. Knepley   ierr = PetscSectionSetUp(rootSection);CHKERRQ(ierr);
434b0a623aaSMatthew G. Knepley   /* Gather rank of each leaf to root */
435b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetStorageSize(rootSection, &nedges);CHKERRQ(ierr);
436b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(pEnd-pStart, &myrank);CHKERRQ(ierr);
437b0a623aaSMatthew G. Knepley   ierr = PetscMalloc1(nedges,  &remoterank);CHKERRQ(ierr);
438b0a623aaSMatthew G. Knepley   for (p = 0; p < pEnd-pStart; ++p) myrank[p] = rank;
439b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherBegin(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
440b0a623aaSMatthew G. Knepley   ierr = PetscSFGatherEnd(sfPoint, MPIU_INT, myrank, remoterank);CHKERRQ(ierr);
441b0a623aaSMatthew G. Knepley   ierr = PetscFree(myrank);CHKERRQ(ierr);
442b0a623aaSMatthew G. Knepley   ierr = ISCreateGeneral(comm, nedges, remoterank, PETSC_OWN_POINTER, rootrank);CHKERRQ(ierr);
443b0a623aaSMatthew G. Knepley   /* Distribute remote ranks to leaves */
444b0a623aaSMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) leafSection, "Leaf Section");CHKERRQ(ierr);
445b0a623aaSMatthew G. Knepley   ierr = DMPlexDistributeFieldIS(dm, sfPoint, rootSection, *rootrank, leafSection, leafrank);CHKERRQ(ierr);
446b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
447b0a623aaSMatthew G. Knepley }
448b0a623aaSMatthew G. Knepley 
449278397a0SMatthew G. Knepley /*@C
450dccdeccaSVaclav Hapla   DMPlexCreateOverlapLabel - Compute owner information for shared points. This basically gets two-sided for an SF.
451b0a623aaSMatthew G. Knepley 
452d083f849SBarry Smith   Collective on dm
453b0a623aaSMatthew G. Knepley 
454b0a623aaSMatthew G. Knepley   Input Parameters:
455b0a623aaSMatthew G. Knepley + dm          - The DM
45624d039d7SMichael Lange . levels      - Number of overlap levels
457b0a623aaSMatthew G. Knepley . rootSection - The number of leaves for a given root point
458b0a623aaSMatthew G. Knepley . rootrank    - The rank of each edge into the root point
459b0a623aaSMatthew G. Knepley . leafSection - The number of processes sharing a given leaf point
460b0a623aaSMatthew G. Knepley - leafrank    - The rank of each process sharing a leaf point
461b0a623aaSMatthew G. Knepley 
462064ec1f3Sprj-   Output Parameter:
463b4ec6ac8SBarry Smith . ovLabel     - DMLabel containing remote overlap contributions as point/rank pairings
464b0a623aaSMatthew G. Knepley 
465b0a623aaSMatthew G. Knepley   Level: developer
466b0a623aaSMatthew G. Knepley 
4671fd9873aSMichael Lange .seealso: DMPlexDistributeOwnership(), DMPlexDistribute()
468b0a623aaSMatthew G. Knepley @*/
469dccdeccaSVaclav Hapla PetscErrorCode DMPlexCreateOverlapLabel(DM dm, PetscInt levels, PetscSection rootSection, IS rootrank, PetscSection leafSection, IS leafrank, DMLabel *ovLabel)
470b0a623aaSMatthew G. Knepley {
471e540f424SMichael Lange   MPI_Comm           comm;
472b0a623aaSMatthew G. Knepley   DMLabel            ovAdjByRank; /* A DMLabel containing all points adjacent to shared points, separated by rank (value in label) */
473874ddda9SLisandro Dalcin   PetscSF            sfPoint;
474b0a623aaSMatthew G. Knepley   const PetscSFNode *remote;
475b0a623aaSMatthew G. Knepley   const PetscInt    *local;
4761fd9873aSMichael Lange   const PetscInt    *nrank, *rrank;
477b0a623aaSMatthew G. Knepley   PetscInt          *adj = NULL;
4781fd9873aSMichael Lange   PetscInt           pStart, pEnd, p, sStart, sEnd, nleaves, l;
4799852e123SBarry Smith   PetscMPIInt        rank, size;
48031bc6364SLisandro Dalcin   PetscBool          flg;
481b0a623aaSMatthew G. Knepley   PetscErrorCode     ierr;
482b0a623aaSMatthew G. Knepley 
483b0a623aaSMatthew G. Knepley   PetscFunctionBegin;
4846ba1a4c7SVaclav Hapla   *ovLabel = NULL;
485e540f424SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
486*ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
487*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
4886ba1a4c7SVaclav Hapla   if (size == 1) PetscFunctionReturn(0);
489b0a623aaSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
490b0a623aaSMatthew G. Knepley   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
491b0a623aaSMatthew G. Knepley   ierr = PetscSectionGetChart(leafSection, &sStart, &sEnd);CHKERRQ(ierr);
492b0a623aaSMatthew G. Knepley   ierr = PetscSFGetGraph(sfPoint, NULL, &nleaves, &local, &remote);CHKERRQ(ierr);
493d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap adjacency", &ovAdjByRank);CHKERRQ(ierr);
494b0a623aaSMatthew G. Knepley   /* Handle leaves: shared with the root point */
495b0a623aaSMatthew G. Knepley   for (l = 0; l < nleaves; ++l) {
496b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, a;
497b0a623aaSMatthew G. Knepley 
498df20756eSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, local ? local[l] : l, &adjSize, &adj);CHKERRQ(ierr);
499b0a623aaSMatthew G. Knepley     for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remote[l].rank);CHKERRQ(ierr);}
500b0a623aaSMatthew G. Knepley   }
501b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(rootrank, &rrank);CHKERRQ(ierr);
502b0a623aaSMatthew G. Knepley   ierr = ISGetIndices(leafrank, &nrank);CHKERRQ(ierr);
503b0a623aaSMatthew G. Knepley   /* Handle roots */
504b0a623aaSMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
505b0a623aaSMatthew G. Knepley     PetscInt adjSize = PETSC_DETERMINE, neighbors = 0, noff, n, a;
506b0a623aaSMatthew G. Knepley 
507b0a623aaSMatthew G. Knepley     if ((p >= sStart) && (p < sEnd)) {
508b0a623aaSMatthew G. Knepley       /* Some leaves share a root with other leaves on different processes */
509b0a623aaSMatthew G. Knepley       ierr = PetscSectionGetDof(leafSection, p, &neighbors);CHKERRQ(ierr);
510b0a623aaSMatthew G. Knepley       if (neighbors) {
511b0a623aaSMatthew G. Knepley         ierr = PetscSectionGetOffset(leafSection, p, &noff);CHKERRQ(ierr);
512b0a623aaSMatthew G. Knepley         ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
513b0a623aaSMatthew G. Knepley         for (n = 0; n < neighbors; ++n) {
514b0a623aaSMatthew G. Knepley           const PetscInt remoteRank = nrank[noff+n];
515b0a623aaSMatthew G. Knepley 
516b0a623aaSMatthew G. Knepley           if (remoteRank == rank) continue;
517b0a623aaSMatthew G. Knepley           for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
518b0a623aaSMatthew G. Knepley         }
519b0a623aaSMatthew G. Knepley       }
520b0a623aaSMatthew G. Knepley     }
521b0a623aaSMatthew G. Knepley     /* Roots are shared with leaves */
522b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetDof(rootSection, p, &neighbors);CHKERRQ(ierr);
523b0a623aaSMatthew G. Knepley     if (!neighbors) continue;
524b0a623aaSMatthew G. Knepley     ierr = PetscSectionGetOffset(rootSection, p, &noff);CHKERRQ(ierr);
525b0a623aaSMatthew G. Knepley     ierr = DMPlexGetAdjacency(dm, p, &adjSize, &adj);CHKERRQ(ierr);
526b0a623aaSMatthew G. Knepley     for (n = 0; n < neighbors; ++n) {
527b0a623aaSMatthew G. Knepley       const PetscInt remoteRank = rrank[noff+n];
528b0a623aaSMatthew G. Knepley 
529b0a623aaSMatthew G. Knepley       if (remoteRank == rank) continue;
530b0a623aaSMatthew G. Knepley       for (a = 0; a < adjSize; ++a) {ierr = DMLabelSetValue(ovAdjByRank, adj[a], remoteRank);CHKERRQ(ierr);}
531b0a623aaSMatthew G. Knepley     }
532b0a623aaSMatthew G. Knepley   }
533b0a623aaSMatthew G. Knepley   ierr = PetscFree(adj);CHKERRQ(ierr);
534b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(rootrank, &rrank);CHKERRQ(ierr);
535b0a623aaSMatthew G. Knepley   ierr = ISRestoreIndices(leafrank, &nrank);CHKERRQ(ierr);
53624d039d7SMichael Lange   /* Add additional overlap levels */
537be200f8dSMichael Lange   for (l = 1; l < levels; l++) {
538be200f8dSMichael Lange     /* Propagate point donations over SF to capture remote connections */
539be200f8dSMichael Lange     ierr = DMPlexPartitionLabelPropagate(dm, ovAdjByRank);CHKERRQ(ierr);
540be200f8dSMichael Lange     /* Add next level of point donations to the label */
541be200f8dSMichael Lange     ierr = DMPlexPartitionLabelAdjacency(dm, ovAdjByRank);CHKERRQ(ierr);
542be200f8dSMichael Lange   }
54326a7d390SMatthew G. Knepley   /* We require the closure in the overlap */
5445abbe4feSMichael Lange   ierr = DMPlexPartitionLabelClosure(dm, ovAdjByRank);CHKERRQ(ierr);
545c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-overlap_view", &flg);CHKERRQ(ierr);
546e540f424SMichael Lange   if (flg) {
547825f8a23SLisandro Dalcin     PetscViewer viewer;
548825f8a23SLisandro Dalcin     ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &viewer);CHKERRQ(ierr);
549825f8a23SLisandro Dalcin     ierr = DMLabelView(ovAdjByRank, viewer);CHKERRQ(ierr);
550b0a623aaSMatthew G. Knepley   }
551874ddda9SLisandro Dalcin   /* Invert sender to receiver label */
552d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Overlap label", ovLabel);CHKERRQ(ierr);
553874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, ovAdjByRank, NULL, *ovLabel);CHKERRQ(ierr);
554a9f1d5b2SMichael Lange   /* Add owned points, except for shared local points */
555a9f1d5b2SMichael Lange   for (p = pStart; p < pEnd; ++p) {ierr = DMLabelSetValue(*ovLabel, p, rank);CHKERRQ(ierr);}
556e540f424SMichael Lange   for (l = 0; l < nleaves; ++l) {
557a9f1d5b2SMichael Lange     ierr = DMLabelClearValue(*ovLabel, local[l], rank);CHKERRQ(ierr);
558a9f1d5b2SMichael Lange     ierr = DMLabelSetValue(*ovLabel, remote[l].index, remote[l].rank);CHKERRQ(ierr);
559e540f424SMichael Lange   }
560e540f424SMichael Lange   /* Clean up */
5611fd9873aSMichael Lange   ierr = DMLabelDestroy(&ovAdjByRank);CHKERRQ(ierr);
562b0a623aaSMatthew G. Knepley   PetscFunctionReturn(0);
563b0a623aaSMatthew G. Knepley }
56470034214SMatthew G. Knepley 
56524cc2ca5SMatthew G. Knepley /*@C
56624cc2ca5SMatthew G. Knepley   DMPlexCreateOverlapMigrationSF - Create an SF describing the new mesh distribution to make the overlap described by the input SF
56724cc2ca5SMatthew G. Knepley 
568d083f849SBarry Smith   Collective on dm
56924cc2ca5SMatthew G. Knepley 
57024cc2ca5SMatthew G. Knepley   Input Parameters:
57124cc2ca5SMatthew G. Knepley + dm          - The DM
57224cc2ca5SMatthew G. Knepley - overlapSF   - The SF mapping ghost points in overlap to owner points on other processes
57324cc2ca5SMatthew G. Knepley 
574064ec1f3Sprj-   Output Parameter:
575a2b725a8SWilliam Gropp . migrationSF - An SF that maps original points in old locations to points in new locations
57624cc2ca5SMatthew G. Knepley 
57724cc2ca5SMatthew G. Knepley   Level: developer
57824cc2ca5SMatthew G. Knepley 
579dccdeccaSVaclav Hapla .seealso: DMPlexCreateOverlapLabel(), DMPlexDistributeOverlap(), DMPlexDistribute()
58024cc2ca5SMatthew G. Knepley @*/
58146f9b1c3SMichael Lange PetscErrorCode DMPlexCreateOverlapMigrationSF(DM dm, PetscSF overlapSF, PetscSF *migrationSF)
58246f9b1c3SMichael Lange {
58346f9b1c3SMichael Lange   MPI_Comm           comm;
5849852e123SBarry Smith   PetscMPIInt        rank, size;
58546f9b1c3SMichael Lange   PetscInt           d, dim, p, pStart, pEnd, nroots, nleaves, newLeaves, point, numSharedPoints;
58646f9b1c3SMichael Lange   PetscInt          *pointDepths, *remoteDepths, *ilocal;
58746f9b1c3SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
58846f9b1c3SMichael Lange   PetscSFNode       *iremote;
58946f9b1c3SMichael Lange   PetscSF            pointSF;
59046f9b1c3SMichael Lange   const PetscInt    *sharedLocal;
59146f9b1c3SMichael Lange   const PetscSFNode *overlapRemote, *sharedRemote;
59246f9b1c3SMichael Lange   PetscErrorCode     ierr;
59346f9b1c3SMichael Lange 
59446f9b1c3SMichael Lange   PetscFunctionBegin;
59546f9b1c3SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
59646f9b1c3SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
597*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
598*ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
59946f9b1c3SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
60046f9b1c3SMichael Lange 
60146f9b1c3SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
60246f9b1c3SMichael Lange   ierr = PetscSFGetGraph(overlapSF, &nroots, &nleaves, NULL, &overlapRemote);CHKERRQ(ierr);
60346f9b1c3SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
60446f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
60546f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
60646f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) pointDepths[p] = d;
60746f9b1c3SMichael Lange   }
60846f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) remoteDepths[p] = -1;
60946f9b1c3SMichael Lange   ierr = PetscSFBcastBegin(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
61046f9b1c3SMichael Lange   ierr = PetscSFBcastEnd(overlapSF, MPIU_INT, pointDepths, remoteDepths);CHKERRQ(ierr);
61146f9b1c3SMichael Lange 
6122d4ee042Sprj-   /* Count received points in each stratum and compute the internal strata shift */
61346f9b1c3SMichael Lange   ierr = PetscMalloc3(dim+1, &depthRecv, dim+1, &depthShift, dim+1, &depthIdx);CHKERRQ(ierr);
61446f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) depthRecv[d]=0;
61546f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) depthRecv[remoteDepths[p]]++;
61646f9b1c3SMichael Lange   depthShift[dim] = 0;
61746f9b1c3SMichael Lange   for (d=0; d<dim; d++) depthShift[d] = depthRecv[dim];
61846f9b1c3SMichael Lange   for (d=1; d<dim; d++) depthShift[d] += depthRecv[0];
61946f9b1c3SMichael Lange   for (d=dim-2; d>0; d--) depthShift[d] += depthRecv[d+1];
62046f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
62146f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
62246f9b1c3SMichael Lange     depthIdx[d] = pStart + depthShift[d];
62346f9b1c3SMichael Lange   }
62446f9b1c3SMichael Lange 
62546f9b1c3SMichael Lange   /* Form the overlap SF build an SF that describes the full overlap migration SF */
62646f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
62746f9b1c3SMichael Lange   newLeaves = pEnd - pStart + nleaves;
62809b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &ilocal);CHKERRQ(ierr);
62909b7985cSMatthew G. Knepley   ierr = PetscMalloc1(newLeaves, &iremote);CHKERRQ(ierr);
63046f9b1c3SMichael Lange   /* First map local points to themselves */
63146f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
63246f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
63346f9b1c3SMichael Lange     for (p=pStart; p<pEnd; p++) {
63446f9b1c3SMichael Lange       point = p + depthShift[d];
63546f9b1c3SMichael Lange       ilocal[point] = point;
63646f9b1c3SMichael Lange       iremote[point].index = p;
63746f9b1c3SMichael Lange       iremote[point].rank = rank;
63846f9b1c3SMichael Lange       depthIdx[d]++;
63946f9b1c3SMichael Lange     }
64046f9b1c3SMichael Lange   }
64146f9b1c3SMichael Lange 
64246f9b1c3SMichael Lange   /* Add in the remote roots for currently shared points */
64346f9b1c3SMichael Lange   ierr = DMGetPointSF(dm, &pointSF);CHKERRQ(ierr);
64446f9b1c3SMichael Lange   ierr = PetscSFGetGraph(pointSF, NULL, &numSharedPoints, &sharedLocal, &sharedRemote);CHKERRQ(ierr);
64546f9b1c3SMichael Lange   for (d=0; d<dim+1; d++) {
64646f9b1c3SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
64746f9b1c3SMichael Lange     for (p=0; p<numSharedPoints; p++) {
64846f9b1c3SMichael Lange       if (pStart <= sharedLocal[p] && sharedLocal[p] < pEnd) {
64946f9b1c3SMichael Lange         point = sharedLocal[p] + depthShift[d];
65046f9b1c3SMichael Lange         iremote[point].index = sharedRemote[p].index;
65146f9b1c3SMichael Lange         iremote[point].rank = sharedRemote[p].rank;
65246f9b1c3SMichael Lange       }
65346f9b1c3SMichael Lange     }
65446f9b1c3SMichael Lange   }
65546f9b1c3SMichael Lange 
65646f9b1c3SMichael Lange   /* Now add the incoming overlap points */
65746f9b1c3SMichael Lange   for (p=0; p<nleaves; p++) {
65846f9b1c3SMichael Lange     point = depthIdx[remoteDepths[p]];
65946f9b1c3SMichael Lange     ilocal[point] = point;
66046f9b1c3SMichael Lange     iremote[point].index = overlapRemote[p].index;
66146f9b1c3SMichael Lange     iremote[point].rank = overlapRemote[p].rank;
66246f9b1c3SMichael Lange     depthIdx[remoteDepths[p]]++;
66346f9b1c3SMichael Lange   }
66415fff7beSMatthew G. Knepley   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
66546f9b1c3SMichael Lange 
66646f9b1c3SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
66746f9b1c3SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Overlap Migration SF");CHKERRQ(ierr);
66846f9b1c3SMichael Lange   ierr = PetscSFSetFromOptions(*migrationSF);CHKERRQ(ierr);
66946f9b1c3SMichael Lange   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
67046f9b1c3SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, pEnd-pStart, newLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
67146f9b1c3SMichael Lange 
67246f9b1c3SMichael Lange   ierr = PetscFree3(depthRecv, depthShift, depthIdx);CHKERRQ(ierr);
67370034214SMatthew G. Knepley   PetscFunctionReturn(0);
67470034214SMatthew G. Knepley }
67570034214SMatthew G. Knepley 
676a9f1d5b2SMichael Lange /*@
677f0e73a3dSToby Isaac   DMPlexStratifyMigrationSF - Rearrange the leaves of a migration sf for stratification.
678a9f1d5b2SMichael Lange 
679064ec1f3Sprj-   Input Parameters:
680a9f1d5b2SMichael Lange + dm          - The DM
681a9f1d5b2SMichael Lange - sf          - A star forest with non-ordered leaves, usually defining a DM point migration
682a9f1d5b2SMichael Lange 
683a9f1d5b2SMichael Lange   Output Parameter:
684a9f1d5b2SMichael Lange . migrationSF - A star forest with added leaf indirection that ensures the resulting DM is stratified
685a9f1d5b2SMichael Lange 
686412e9a14SMatthew G. Knepley   Note:
687412e9a14SMatthew G. Knepley   This lexicographically sorts by (depth, cellType)
688412e9a14SMatthew G. Knepley 
689a9f1d5b2SMichael Lange   Level: developer
690a9f1d5b2SMichael Lange 
691a9f1d5b2SMichael Lange .seealso: DMPlexPartitionLabelCreateSF(), DMPlexDistribute(), DMPlexDistributeOverlap()
692a9f1d5b2SMichael Lange @*/
693a9f1d5b2SMichael Lange PetscErrorCode DMPlexStratifyMigrationSF(DM dm, PetscSF sf, PetscSF *migrationSF)
694a9f1d5b2SMichael Lange {
695a9f1d5b2SMichael Lange   MPI_Comm           comm;
6969852e123SBarry Smith   PetscMPIInt        rank, size;
697412e9a14SMatthew G. Knepley   PetscInt           d, ldepth, depth, dim, p, pStart, pEnd, nroots, nleaves;
698412e9a14SMatthew G. Knepley   PetscSFNode       *pointDepths, *remoteDepths;
699412e9a14SMatthew G. Knepley   PetscInt          *ilocal;
700a9f1d5b2SMichael Lange   PetscInt          *depthRecv, *depthShift, *depthIdx;
701412e9a14SMatthew G. Knepley   PetscInt          *ctRecv,    *ctShift,    *ctIdx;
702a9f1d5b2SMichael Lange   const PetscSFNode *iremote;
703a9f1d5b2SMichael Lange   PetscErrorCode     ierr;
704a9f1d5b2SMichael Lange 
705a9f1d5b2SMichael Lange   PetscFunctionBegin;
706a9f1d5b2SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
707a9f1d5b2SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
708*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
709*ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
7107fab53ddSMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &ldepth);CHKERRQ(ierr);
711412e9a14SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
712b2566f29SBarry Smith   ierr = MPIU_Allreduce(&ldepth, &depth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
7137fab53ddSMatthew G. Knepley   if ((ldepth >= 0) && (depth != ldepth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", ldepth, depth);
71430b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
715a9f1d5b2SMichael Lange 
716a9f1d5b2SMichael Lange   /* Before building the migration SF we need to know the new stratum offsets */
717a9f1d5b2SMichael Lange   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, NULL, &iremote);CHKERRQ(ierr);
718a9f1d5b2SMichael Lange   ierr = PetscMalloc2(nroots, &pointDepths, nleaves, &remoteDepths);CHKERRQ(ierr);
7197fab53ddSMatthew G. Knepley   for (d = 0; d < depth+1; ++d) {
720a9f1d5b2SMichael Lange     ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr);
721f0e73a3dSToby Isaac     for (p = pStart; p < pEnd; ++p) {
722412e9a14SMatthew G. Knepley       DMPolytopeType ct;
723f0e73a3dSToby Isaac 
724412e9a14SMatthew G. Knepley       ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr);
725412e9a14SMatthew G. Knepley       pointDepths[p].index = d;
726412e9a14SMatthew G. Knepley       pointDepths[p].rank  = ct;
727f0e73a3dSToby Isaac     }
728412e9a14SMatthew G. Knepley   }
729412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {remoteDepths[p].index = -1; remoteDepths[p].rank = -1;}
730412e9a14SMatthew G. Knepley   ierr = PetscSFBcastBegin(sf, MPIU_2INT, pointDepths, remoteDepths);CHKERRQ(ierr);
731412e9a14SMatthew G. Knepley   ierr = PetscSFBcastEnd(sf, MPIU_2INT, pointDepths, remoteDepths);CHKERRQ(ierr);
732412e9a14SMatthew G. Knepley   /* Count received points in each stratum and compute the internal strata shift */
733412e9a14SMatthew G. Knepley   ierr = PetscCalloc6(depth+1, &depthRecv, depth+1, &depthShift, depth+1, &depthIdx, DM_NUM_POLYTOPES, &ctRecv, DM_NUM_POLYTOPES, &ctShift, DM_NUM_POLYTOPES, &ctIdx);CHKERRQ(ierr);
734412e9a14SMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
735412e9a14SMatthew G. Knepley     if (remoteDepths[p].rank < 0) {
736412e9a14SMatthew G. Knepley       ++depthRecv[remoteDepths[p].index];
737412e9a14SMatthew G. Knepley     } else {
738412e9a14SMatthew G. Knepley       ++ctRecv[remoteDepths[p].rank];
739412e9a14SMatthew G. Knepley     }
740412e9a14SMatthew G. Knepley   }
741412e9a14SMatthew G. Knepley   {
742412e9a14SMatthew G. Knepley     PetscInt depths[4], dims[4], shift = 0, i, c;
743412e9a14SMatthew G. Knepley 
7448238f61eSMatthew G. Knepley     /* Cells (depth), Vertices (0), Faces (depth-1), Edges (1)
7458238f61eSMatthew G. Knepley          Consider DM_POLYTOPE_FV_GHOST and DM_POLYTOPE_INTERIOR_GHOST as cells
7468238f61eSMatthew G. Knepley      */
747412e9a14SMatthew G. Knepley     depths[0] = depth; depths[1] = 0; depths[2] = depth-1; depths[3] = 1;
748412e9a14SMatthew G. Knepley     dims[0]   = dim;   dims[1]   = 0; dims[2]   = dim-1;   dims[3]   = 1;
749412e9a14SMatthew G. Knepley     for (i = 0; i <= depth; ++i) {
750412e9a14SMatthew G. Knepley       const PetscInt dep = depths[i];
751412e9a14SMatthew G. Knepley       const PetscInt dim = dims[i];
752412e9a14SMatthew G. Knepley 
753412e9a14SMatthew G. Knepley       for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
7548238f61eSMatthew G. Knepley         if (DMPolytopeTypeGetDim((DMPolytopeType) c) != dim && !(i == 0 && (c == DM_POLYTOPE_FV_GHOST || c == DM_POLYTOPE_INTERIOR_GHOST))) continue;
755412e9a14SMatthew G. Knepley         ctShift[c] = shift;
756412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
757412e9a14SMatthew G. Knepley       }
758412e9a14SMatthew G. Knepley       depthShift[dep] = shift;
759412e9a14SMatthew G. Knepley       shift          += depthRecv[dep];
760412e9a14SMatthew G. Knepley     }
761412e9a14SMatthew G. Knepley     for (c = 0; c < DM_NUM_POLYTOPES; ++c) {
762412e9a14SMatthew G. Knepley       const PetscInt ctDim = DMPolytopeTypeGetDim((DMPolytopeType) c);
763412e9a14SMatthew G. Knepley 
7648238f61eSMatthew G. Knepley       if ((ctDim < 0 || ctDim > dim) && (c != DM_POLYTOPE_FV_GHOST && c != DM_POLYTOPE_INTERIOR_GHOST)) {
765412e9a14SMatthew G. Knepley         ctShift[c] = shift;
766412e9a14SMatthew G. Knepley         shift     += ctRecv[c];
767412e9a14SMatthew G. Knepley       }
768412e9a14SMatthew G. Knepley     }
769412e9a14SMatthew G. Knepley   }
770a9f1d5b2SMichael Lange   /* Derive a new local permutation based on stratified indices */
771a9f1d5b2SMichael Lange   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
7727fab53ddSMatthew G. Knepley   for (p = 0; p < nleaves; ++p) {
773412e9a14SMatthew G. Knepley     const PetscInt       dep = remoteDepths[p].index;
774412e9a14SMatthew G. Knepley     const DMPolytopeType ct  = (DMPolytopeType) remoteDepths[p].rank;
7757fab53ddSMatthew G. Knepley 
776412e9a14SMatthew G. Knepley     if ((PetscInt) ct < 0) {
7777fab53ddSMatthew G. Knepley       ilocal[p] = depthShift[dep] + depthIdx[dep];
778412e9a14SMatthew G. Knepley       ++depthIdx[dep];
779412e9a14SMatthew G. Knepley     } else {
780412e9a14SMatthew G. Knepley       ilocal[p] = ctShift[ct] + ctIdx[ct];
781412e9a14SMatthew G. Knepley       ++ctIdx[ct];
782412e9a14SMatthew G. Knepley     }
783a9f1d5b2SMichael Lange   }
784a9f1d5b2SMichael Lange   ierr = PetscSFCreate(comm, migrationSF);CHKERRQ(ierr);
785a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) *migrationSF, "Migration SF");CHKERRQ(ierr);
786a9f1d5b2SMichael Lange   ierr = PetscSFSetGraph(*migrationSF, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_COPY_VALUES);CHKERRQ(ierr);
787a9f1d5b2SMichael Lange   ierr = PetscFree2(pointDepths,remoteDepths);CHKERRQ(ierr);
788412e9a14SMatthew G. Knepley   ierr = PetscFree6(depthRecv, depthShift, depthIdx, ctRecv, ctShift, ctIdx);CHKERRQ(ierr);
78930b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartStratSF,dm,0,0,0);CHKERRQ(ierr);
790a9f1d5b2SMichael Lange   PetscFunctionReturn(0);
791a9f1d5b2SMichael Lange }
792a9f1d5b2SMichael Lange 
79370034214SMatthew G. Knepley /*@
79470034214SMatthew G. Knepley   DMPlexDistributeField - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
79570034214SMatthew G. Knepley 
796d083f849SBarry Smith   Collective on dm
79770034214SMatthew G. Knepley 
79870034214SMatthew G. Knepley   Input Parameters:
79970034214SMatthew G. Knepley + dm - The DMPlex object
80070034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
80170034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
802cb15cd0eSMatthew G. Knepley - originalVec - The existing data in a local vector
80370034214SMatthew G. Knepley 
80470034214SMatthew G. Knepley   Output Parameters:
80570034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
806cb15cd0eSMatthew G. Knepley - newVec - The new data in a local vector
80770034214SMatthew G. Knepley 
80870034214SMatthew G. Knepley   Level: developer
80970034214SMatthew G. Knepley 
81070034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeFieldIS(), DMPlexDistributeData()
81170034214SMatthew G. Knepley @*/
81270034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeField(DM dm, PetscSF pointSF, PetscSection originalSection, Vec originalVec, PetscSection newSection, Vec newVec)
81370034214SMatthew G. Knepley {
81470034214SMatthew G. Knepley   PetscSF        fieldSF;
81570034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
81670034214SMatthew G. Knepley   PetscScalar   *originalValues, *newValues;
81770034214SMatthew G. Knepley   PetscErrorCode ierr;
81870034214SMatthew G. Knepley 
81970034214SMatthew G. Knepley   PetscFunctionBegin;
82070034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
82170034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
82270034214SMatthew G. Knepley 
82370034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
82470034214SMatthew G. Knepley   ierr = VecSetSizes(newVec, fieldSize, PETSC_DETERMINE);CHKERRQ(ierr);
82570034214SMatthew G. Knepley   ierr = VecSetType(newVec,dm->vectype);CHKERRQ(ierr);
82670034214SMatthew G. Knepley 
82770034214SMatthew G. Knepley   ierr = VecGetArray(originalVec, &originalValues);CHKERRQ(ierr);
82870034214SMatthew G. Knepley   ierr = VecGetArray(newVec, &newValues);CHKERRQ(ierr);
82970034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8308a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
83170034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
83270034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_SCALAR, originalValues, newValues);CHKERRQ(ierr);
83370034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
83470034214SMatthew G. Knepley   ierr = VecRestoreArray(newVec, &newValues);CHKERRQ(ierr);
83570034214SMatthew G. Knepley   ierr = VecRestoreArray(originalVec, &originalValues);CHKERRQ(ierr);
83670034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
83770034214SMatthew G. Knepley   PetscFunctionReturn(0);
83870034214SMatthew G. Knepley }
83970034214SMatthew G. Knepley 
84070034214SMatthew G. Knepley /*@
84170034214SMatthew G. Knepley   DMPlexDistributeFieldIS - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
84270034214SMatthew G. Knepley 
843d083f849SBarry Smith   Collective on dm
84470034214SMatthew G. Knepley 
84570034214SMatthew G. Knepley   Input Parameters:
84670034214SMatthew G. Knepley + dm - The DMPlex object
84770034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
84870034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
84970034214SMatthew G. Knepley - originalIS - The existing data
85070034214SMatthew G. Knepley 
85170034214SMatthew G. Knepley   Output Parameters:
85270034214SMatthew G. Knepley + newSection - The PetscSF describing the new data layout
85370034214SMatthew G. Knepley - newIS - The new data
85470034214SMatthew G. Knepley 
85570034214SMatthew G. Knepley   Level: developer
85670034214SMatthew G. Knepley 
85770034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField(), DMPlexDistributeData()
85870034214SMatthew G. Knepley @*/
85970034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeFieldIS(DM dm, PetscSF pointSF, PetscSection originalSection, IS originalIS, PetscSection newSection, IS *newIS)
86070034214SMatthew G. Knepley {
86170034214SMatthew G. Knepley   PetscSF         fieldSF;
86270034214SMatthew G. Knepley   PetscInt       *newValues, *remoteOffsets, fieldSize;
86370034214SMatthew G. Knepley   const PetscInt *originalValues;
86470034214SMatthew G. Knepley   PetscErrorCode  ierr;
86570034214SMatthew G. Knepley 
86670034214SMatthew G. Knepley   PetscFunctionBegin;
86770034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
86870034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
86970034214SMatthew G. Knepley 
87070034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
871854ce69bSBarry Smith   ierr = PetscMalloc1(fieldSize, &newValues);CHKERRQ(ierr);
87270034214SMatthew G. Knepley 
87370034214SMatthew G. Knepley   ierr = ISGetIndices(originalIS, &originalValues);CHKERRQ(ierr);
87470034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
8758a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
876aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
877aaf8c182SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, MPIU_INT, (PetscInt *) originalValues, newValues);CHKERRQ(ierr);
87870034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
87970034214SMatthew G. Knepley   ierr = ISRestoreIndices(originalIS, &originalValues);CHKERRQ(ierr);
88070034214SMatthew G. Knepley   ierr = ISCreateGeneral(PetscObjectComm((PetscObject) pointSF), fieldSize, newValues, PETSC_OWN_POINTER, newIS);CHKERRQ(ierr);
88170034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeField,dm,0,0,0);CHKERRQ(ierr);
88270034214SMatthew G. Knepley   PetscFunctionReturn(0);
88370034214SMatthew G. Knepley }
88470034214SMatthew G. Knepley 
88570034214SMatthew G. Knepley /*@
88670034214SMatthew G. Knepley   DMPlexDistributeData - Distribute field data to match a given PetscSF, usually the SF from mesh distribution
88770034214SMatthew G. Knepley 
888d083f849SBarry Smith   Collective on dm
88970034214SMatthew G. Knepley 
89070034214SMatthew G. Knepley   Input Parameters:
89170034214SMatthew G. Knepley + dm - The DMPlex object
89270034214SMatthew G. Knepley . pointSF - The PetscSF describing the communication pattern
89370034214SMatthew G. Knepley . originalSection - The PetscSection for existing data layout
89470034214SMatthew G. Knepley . datatype - The type of data
89570034214SMatthew G. Knepley - originalData - The existing data
89670034214SMatthew G. Knepley 
89770034214SMatthew G. Knepley   Output Parameters:
89870034214SMatthew G. Knepley + newSection - The PetscSection describing the new data layout
89970034214SMatthew G. Knepley - newData - The new data
90070034214SMatthew G. Knepley 
90170034214SMatthew G. Knepley   Level: developer
90270034214SMatthew G. Knepley 
90370034214SMatthew G. Knepley .seealso: DMPlexDistribute(), DMPlexDistributeField()
90470034214SMatthew G. Knepley @*/
90570034214SMatthew G. Knepley PetscErrorCode DMPlexDistributeData(DM dm, PetscSF pointSF, PetscSection originalSection, MPI_Datatype datatype, void *originalData, PetscSection newSection, void **newData)
90670034214SMatthew G. Knepley {
90770034214SMatthew G. Knepley   PetscSF        fieldSF;
90870034214SMatthew G. Knepley   PetscInt      *remoteOffsets, fieldSize;
90970034214SMatthew G. Knepley   PetscMPIInt    dataSize;
91070034214SMatthew G. Knepley   PetscErrorCode ierr;
91170034214SMatthew G. Knepley 
91270034214SMatthew G. Knepley   PetscFunctionBegin;
91370034214SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
91470034214SMatthew G. Knepley   ierr = PetscSFDistributeSection(pointSF, originalSection, &remoteOffsets, newSection);CHKERRQ(ierr);
91570034214SMatthew G. Knepley 
91670034214SMatthew G. Knepley   ierr = PetscSectionGetStorageSize(newSection, &fieldSize);CHKERRQ(ierr);
917*ffc4695bSBarry Smith   ierr = MPI_Type_size(datatype, &dataSize);CHKERRMPI(ierr);
91870034214SMatthew G. Knepley   ierr = PetscMalloc(fieldSize * dataSize, newData);CHKERRQ(ierr);
91970034214SMatthew G. Knepley 
92070034214SMatthew G. Knepley   ierr = PetscSFCreateSectionSF(pointSF, originalSection, remoteOffsets, newSection, &fieldSF);CHKERRQ(ierr);
9218a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
92270034214SMatthew G. Knepley   ierr = PetscSFBcastBegin(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
92370034214SMatthew G. Knepley   ierr = PetscSFBcastEnd(fieldSF, datatype, originalData, *newData);CHKERRQ(ierr);
92470034214SMatthew G. Knepley   ierr = PetscSFDestroy(&fieldSF);CHKERRQ(ierr);
92570034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_DistributeData,dm,0,0,0);CHKERRQ(ierr);
92670034214SMatthew G. Knepley   PetscFunctionReturn(0);
92770034214SMatthew G. Knepley }
92870034214SMatthew G. Knepley 
92924cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCones(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
930cc71bff1SMichael Lange {
931cc71bff1SMichael Lange   DM_Plex               *pmesh = (DM_Plex*) (dmParallel)->data;
932cc71bff1SMichael Lange   MPI_Comm               comm;
933cc71bff1SMichael Lange   PetscSF                coneSF;
934cc71bff1SMichael Lange   PetscSection           originalConeSection, newConeSection;
935ac04eaf7SToby Isaac   PetscInt              *remoteOffsets, *cones, *globCones, *newCones, newConesSize;
936cc71bff1SMichael Lange   PetscBool              flg;
937cc71bff1SMichael Lange   PetscErrorCode         ierr;
938cc71bff1SMichael Lange 
939cc71bff1SMichael Lange   PetscFunctionBegin;
940cc71bff1SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9410c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
9420c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
943cc71bff1SMichael Lange   /* Distribute cone section */
944cc71bff1SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
945cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dm, &originalConeSection);CHKERRQ(ierr);
946cc71bff1SMichael Lange   ierr = DMPlexGetConeSection(dmParallel, &newConeSection);CHKERRQ(ierr);
947cc71bff1SMichael Lange   ierr = PetscSFDistributeSection(migrationSF, originalConeSection, &remoteOffsets, newConeSection);CHKERRQ(ierr);
948cc71bff1SMichael Lange   ierr = DMSetUp(dmParallel);CHKERRQ(ierr);
949cc71bff1SMichael Lange   {
950cc71bff1SMichael Lange     PetscInt pStart, pEnd, p;
951cc71bff1SMichael Lange 
952cc71bff1SMichael Lange     ierr = PetscSectionGetChart(newConeSection, &pStart, &pEnd);CHKERRQ(ierr);
953cc71bff1SMichael Lange     for (p = pStart; p < pEnd; ++p) {
954cc71bff1SMichael Lange       PetscInt coneSize;
955cc71bff1SMichael Lange       ierr               = PetscSectionGetDof(newConeSection, p, &coneSize);CHKERRQ(ierr);
956cc71bff1SMichael Lange       pmesh->maxConeSize = PetscMax(pmesh->maxConeSize, coneSize);
957cc71bff1SMichael Lange     }
958cc71bff1SMichael Lange   }
959cc71bff1SMichael Lange   /* Communicate and renumber cones */
960cc71bff1SMichael Lange   ierr = PetscSFCreateSectionSF(migrationSF, originalConeSection, remoteOffsets, newConeSection, &coneSF);CHKERRQ(ierr);
9618a713f3bSLawrence Mitchell   ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
962cc71bff1SMichael Lange   ierr = DMPlexGetCones(dm, &cones);CHKERRQ(ierr);
963ac04eaf7SToby Isaac   if (original) {
964ac04eaf7SToby Isaac     PetscInt numCones;
965ac04eaf7SToby Isaac 
966367003a6SStefano Zampini     ierr = PetscSectionGetStorageSize(originalConeSection,&numCones);CHKERRQ(ierr);
967367003a6SStefano Zampini     ierr = PetscMalloc1(numCones,&globCones);CHKERRQ(ierr);
968ac04eaf7SToby Isaac     ierr = ISLocalToGlobalMappingApplyBlock(original, numCones, cones, globCones);CHKERRQ(ierr);
969367003a6SStefano Zampini   } else {
970ac04eaf7SToby Isaac     globCones = cones;
971ac04eaf7SToby Isaac   }
972cc71bff1SMichael Lange   ierr = DMPlexGetCones(dmParallel, &newCones);CHKERRQ(ierr);
973ac04eaf7SToby Isaac   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
974ac04eaf7SToby Isaac   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, globCones, newCones);CHKERRQ(ierr);
975ac04eaf7SToby Isaac   if (original) {
976ac04eaf7SToby Isaac     ierr = PetscFree(globCones);CHKERRQ(ierr);
977ac04eaf7SToby Isaac   }
978cc71bff1SMichael Lange   ierr = PetscSectionGetStorageSize(newConeSection, &newConesSize);CHKERRQ(ierr);
979cc71bff1SMichael Lange   ierr = ISGlobalToLocalMappingApplyBlock(renumbering, IS_GTOLM_MASK, newConesSize, newCones, NULL, newCones);CHKERRQ(ierr);
98076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
9813533c52bSMatthew G. Knepley     PetscInt  p;
9823533c52bSMatthew G. Knepley     PetscBool valid = PETSC_TRUE;
9833533c52bSMatthew G. Knepley     for (p = 0; p < newConesSize; ++p) {
984367003a6SStefano Zampini       if (newCones[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "[%d] Point %D not in overlap SF\n", PetscGlobalRank,p);CHKERRQ(ierr);}
9853533c52bSMatthew G. Knepley     }
9863533c52bSMatthew G. Knepley     if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
9873533c52bSMatthew G. Knepley   }
988c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-cones_view", &flg);CHKERRQ(ierr);
989cc71bff1SMichael Lange   if (flg) {
990cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Serial Cone Section:\n");CHKERRQ(ierr);
991a8c5bd36SStefano Zampini     ierr = PetscSectionView(originalConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
992cc71bff1SMichael Lange     ierr = PetscPrintf(comm, "Parallel Cone Section:\n");CHKERRQ(ierr);
993a8c5bd36SStefano Zampini     ierr = PetscSectionView(newConeSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
994cc71bff1SMichael Lange     ierr = PetscSFView(coneSF, NULL);CHKERRQ(ierr);
995cc71bff1SMichael Lange   }
996cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dm, &cones);CHKERRQ(ierr);
997cc71bff1SMichael Lange   ierr = DMPlexGetConeOrientations(dmParallel, &newCones);CHKERRQ(ierr);
998cc71bff1SMichael Lange   ierr = PetscSFBcastBegin(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
999cc71bff1SMichael Lange   ierr = PetscSFBcastEnd(coneSF, MPIU_INT, cones, newCones);CHKERRQ(ierr);
1000cc71bff1SMichael Lange   ierr = PetscSFDestroy(&coneSF);CHKERRQ(ierr);
1001cc71bff1SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeCones,dm,0,0,0);CHKERRQ(ierr);
1002eaf898f9SPatrick Sanan   /* Create supports and stratify DMPlex */
1003cc71bff1SMichael Lange   {
1004cc71bff1SMichael Lange     PetscInt pStart, pEnd;
1005cc71bff1SMichael Lange 
1006cc71bff1SMichael Lange     ierr = PetscSectionGetChart(pmesh->coneSection, &pStart, &pEnd);CHKERRQ(ierr);
1007cc71bff1SMichael Lange     ierr = PetscSectionSetChart(pmesh->supportSection, pStart, pEnd);CHKERRQ(ierr);
1008cc71bff1SMichael Lange   }
1009cc71bff1SMichael Lange   ierr = DMPlexSymmetrize(dmParallel);CHKERRQ(ierr);
1010cc71bff1SMichael Lange   ierr = DMPlexStratify(dmParallel);CHKERRQ(ierr);
10111cf84007SMatthew G. Knepley   {
10121cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
10131cf84007SMatthew G. Knepley 
1014b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1015b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
10161cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
10171cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
10181cf84007SMatthew G. Knepley   }
1019cc71bff1SMichael Lange   PetscFunctionReturn(0);
1020cc71bff1SMichael Lange }
1021cc71bff1SMichael Lange 
102224cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeCoordinates(DM dm, PetscSF migrationSF, DM dmParallel)
10230df0e737SMichael Lange {
10240df0e737SMichael Lange   MPI_Comm         comm;
10250df0e737SMichael Lange   PetscSection     originalCoordSection, newCoordSection;
10260df0e737SMichael Lange   Vec              originalCoordinates, newCoordinates;
10270df0e737SMichael Lange   PetscInt         bs;
102890b157c4SStefano Zampini   PetscBool        isper;
10290df0e737SMichael Lange   const char      *name;
10300df0e737SMichael Lange   const PetscReal *maxCell, *L;
10315dc8c3f7SMatthew G. Knepley   const DMBoundaryType *bd;
10320df0e737SMichael Lange   PetscErrorCode   ierr;
10330df0e737SMichael Lange 
10340df0e737SMichael Lange   PetscFunctionBegin;
10350df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10360c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10370df0e737SMichael Lange 
10380df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
10390df0e737SMichael Lange   ierr = DMGetCoordinateSection(dm, &originalCoordSection);CHKERRQ(ierr);
10400df0e737SMichael Lange   ierr = DMGetCoordinateSection(dmParallel, &newCoordSection);CHKERRQ(ierr);
10410df0e737SMichael Lange   ierr = DMGetCoordinatesLocal(dm, &originalCoordinates);CHKERRQ(ierr);
10420df0e737SMichael Lange   if (originalCoordinates) {
10438b9ced59SLisandro Dalcin     ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr);
10440df0e737SMichael Lange     ierr = PetscObjectGetName((PetscObject) originalCoordinates, &name);CHKERRQ(ierr);
10450df0e737SMichael Lange     ierr = PetscObjectSetName((PetscObject) newCoordinates, name);CHKERRQ(ierr);
10460df0e737SMichael Lange 
10470df0e737SMichael Lange     ierr = DMPlexDistributeField(dm, migrationSF, originalCoordSection, originalCoordinates, newCoordSection, newCoordinates);CHKERRQ(ierr);
10480df0e737SMichael Lange     ierr = DMSetCoordinatesLocal(dmParallel, newCoordinates);CHKERRQ(ierr);
10490df0e737SMichael Lange     ierr = VecGetBlockSize(originalCoordinates, &bs);CHKERRQ(ierr);
10500df0e737SMichael Lange     ierr = VecSetBlockSize(newCoordinates, bs);CHKERRQ(ierr);
10510df0e737SMichael Lange     ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr);
10520df0e737SMichael Lange   }
105390b157c4SStefano Zampini   ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr);
105490b157c4SStefano Zampini   ierr = DMSetPeriodicity(dmParallel, isper, maxCell, L, bd);CHKERRQ(ierr);
10550df0e737SMichael Lange   PetscFunctionReturn(0);
10560df0e737SMichael Lange }
10570df0e737SMichael Lange 
105824cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeLabels(DM dm, PetscSF migrationSF, DM dmParallel)
10590df0e737SMichael Lange {
1060df0420ecSMatthew G. Knepley   DM_Plex         *mesh = (DM_Plex*) dm->data;
10610df0e737SMichael Lange   MPI_Comm         comm;
10627980c9d4SMatthew G. Knepley   DMLabel          depthLabel;
10630df0e737SMichael Lange   PetscMPIInt      rank;
10647980c9d4SMatthew G. Knepley   PetscInt         depth, d, numLabels, numLocalLabels, l;
1065df0420ecSMatthew G. Knepley   PetscBool        hasLabels = PETSC_FALSE, lsendDepth, sendDepth;
1066df0420ecSMatthew G. Knepley   PetscObjectState depthState = -1;
10670df0e737SMichael Lange   PetscErrorCode   ierr;
10680df0e737SMichael Lange 
10690df0e737SMichael Lange   PetscFunctionBegin;
10700df0e737SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10710c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
10720c86c063SLisandro Dalcin 
10730df0e737SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
10740df0e737SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1075*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
10760df0e737SMichael Lange 
1077df0420ecSMatthew G. Knepley   /* If the user has changed the depth label, communicate it instead */
10787980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
10797980c9d4SMatthew G. Knepley   ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr);
1080d67d17b1SMatthew G. Knepley   if (depthLabel) {ierr = PetscObjectStateGet((PetscObject) depthLabel, &depthState);CHKERRQ(ierr);}
1081df0420ecSMatthew G. Knepley   lsendDepth = mesh->depthState != depthState ? PETSC_TRUE : PETSC_FALSE;
1082b2566f29SBarry Smith   ierr = MPIU_Allreduce(&lsendDepth, &sendDepth, 1, MPIU_BOOL, MPI_LOR, comm);CHKERRQ(ierr);
1083df0420ecSMatthew G. Knepley   if (sendDepth) {
1084a7998027SVaclav Hapla     ierr = DMPlexGetDepthLabel(dmParallel, &dmParallel->depthLabel);CHKERRQ(ierr);
1085a7998027SVaclav Hapla     ierr = DMRemoveLabelBySelf(dmParallel, &dmParallel->depthLabel, PETSC_FALSE);CHKERRQ(ierr);
1086df0420ecSMatthew G. Knepley   }
1087d995df53SMatthew G. Knepley   /* Everyone must have either the same number of labels, or none */
1088c58f1c22SToby Isaac   ierr = DMGetNumLabels(dm, &numLocalLabels);CHKERRQ(ierr);
1089d995df53SMatthew G. Knepley   numLabels = numLocalLabels;
1090*ffc4695bSBarry Smith   ierr = MPI_Bcast(&numLabels, 1, MPIU_INT, 0, comm);CHKERRMPI(ierr);
1091627847f0SMatthew G. Knepley   if (numLabels == numLocalLabels) hasLabels = PETSC_TRUE;
10925d80c0bfSVaclav Hapla   for (l = 0; l < numLabels; ++l) {
1093bdd2d751SMichael Lange     DMLabel     label = NULL, labelNew = NULL;
109483e10cb3SLisandro Dalcin     PetscBool   isDepth, lisOutput = PETSC_TRUE, isOutput;
1095d67d17b1SMatthew G. Knepley     const char *name = NULL;
10960df0e737SMichael Lange 
1097d67d17b1SMatthew G. Knepley     if (hasLabels) {
1098d67d17b1SMatthew G. Knepley       ierr = DMGetLabelByNum(dm, l, &label);CHKERRQ(ierr);
10990df0e737SMichael Lange       /* Skip "depth" because it is recreated */
1100d67d17b1SMatthew G. Knepley       ierr = PetscObjectGetName((PetscObject) label, &name);CHKERRQ(ierr);
1101d67d17b1SMatthew G. Knepley       ierr = PetscStrcmp(name, "depth", &isDepth);CHKERRQ(ierr);
1102d67d17b1SMatthew G. Knepley     }
1103*ffc4695bSBarry Smith     ierr = MPI_Bcast(&isDepth, 1, MPIU_BOOL, 0, comm);CHKERRMPI(ierr);
110483e10cb3SLisandro Dalcin     if (isDepth && !sendDepth) continue;
1105bdd2d751SMichael Lange     ierr = DMLabelDistribute(label, migrationSF, &labelNew);CHKERRQ(ierr);
110683e10cb3SLisandro Dalcin     if (isDepth) {
11077980c9d4SMatthew G. Knepley       /* Put in any missing strata which can occur if users are managing the depth label themselves */
11087980c9d4SMatthew G. Knepley       PetscInt gdepth;
11097980c9d4SMatthew G. Knepley 
11107980c9d4SMatthew G. Knepley       ierr = MPIU_Allreduce(&depth, &gdepth, 1, MPIU_INT, MPI_MAX, comm);CHKERRQ(ierr);
11117980c9d4SMatthew G. Knepley       if ((depth >= 0) && (gdepth != depth)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent Plex depth %d != %d", depth, gdepth);
11127980c9d4SMatthew G. Knepley       for (d = 0; d <= gdepth; ++d) {
11137980c9d4SMatthew G. Knepley         PetscBool has;
11147980c9d4SMatthew G. Knepley 
11157980c9d4SMatthew G. Knepley         ierr = DMLabelHasStratum(labelNew, d, &has);CHKERRQ(ierr);
111683e10cb3SLisandro Dalcin         if (!has) {ierr = DMLabelAddStratum(labelNew, d);CHKERRQ(ierr);}
11177980c9d4SMatthew G. Knepley       }
11187980c9d4SMatthew G. Knepley     }
1119c58f1c22SToby Isaac     ierr = DMAddLabel(dmParallel, labelNew);CHKERRQ(ierr);
112083e10cb3SLisandro Dalcin     /* Put the output flag in the new label */
1121d67d17b1SMatthew G. Knepley     if (hasLabels) {ierr = DMGetLabelOutput(dm, name, &lisOutput);CHKERRQ(ierr);}
112283e10cb3SLisandro Dalcin     ierr = MPIU_Allreduce(&lisOutput, &isOutput, 1, MPIU_BOOL, MPI_LAND, comm);CHKERRQ(ierr);
1123d67d17b1SMatthew G. Knepley     ierr = PetscObjectGetName((PetscObject) labelNew, &name);CHKERRQ(ierr);
1124d67d17b1SMatthew G. Knepley     ierr = DMSetLabelOutput(dmParallel, name, isOutput);CHKERRQ(ierr);
112508f633c4SVaclav Hapla     ierr = DMLabelDestroy(&labelNew);CHKERRQ(ierr);
11260df0e737SMichael Lange   }
11270df0e737SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeLabels,dm,0,0,0);CHKERRQ(ierr);
11280df0e737SMichael Lange   PetscFunctionReturn(0);
11290df0e737SMichael Lange }
11300df0e737SMichael Lange 
113124cc2ca5SMatthew G. Knepley static PetscErrorCode DMPlexDistributeSetupTree(DM dm, PetscSF migrationSF, ISLocalToGlobalMapping original, ISLocalToGlobalMapping renumbering, DM dmParallel)
1132a6f36705SMichael Lange {
113315078cd4SMichael Lange   DM_Plex        *mesh  = (DM_Plex*) dm->data;
113415078cd4SMichael Lange   DM_Plex        *pmesh = (DM_Plex*) (dmParallel)->data;
1135a6f36705SMichael Lange   MPI_Comm        comm;
1136a6f36705SMichael Lange   DM              refTree;
1137a6f36705SMichael Lange   PetscSection    origParentSection, newParentSection;
1138a6f36705SMichael Lange   PetscInt        *origParents, *origChildIDs;
1139a6f36705SMichael Lange   PetscBool       flg;
1140a6f36705SMichael Lange   PetscErrorCode  ierr;
1141a6f36705SMichael Lange 
1142a6f36705SMichael Lange   PetscFunctionBegin;
1143a6f36705SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11440c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 5);
1145a6f36705SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1146a6f36705SMichael Lange 
1147a6f36705SMichael Lange   /* Set up tree */
1148a6f36705SMichael Lange   ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr);
1149a6f36705SMichael Lange   ierr = DMPlexSetReferenceTree(dmParallel,refTree);CHKERRQ(ierr);
1150a6f36705SMichael Lange   ierr = DMPlexGetTree(dm,&origParentSection,&origParents,&origChildIDs,NULL,NULL);CHKERRQ(ierr);
1151a6f36705SMichael Lange   if (origParentSection) {
1152a6f36705SMichael Lange     PetscInt        pStart, pEnd;
115308633170SToby Isaac     PetscInt        *newParents, *newChildIDs, *globParents;
1154a6f36705SMichael Lange     PetscInt        *remoteOffsetsParents, newParentSize;
1155a6f36705SMichael Lange     PetscSF         parentSF;
1156a6f36705SMichael Lange 
1157a6f36705SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
1158a6f36705SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmParallel),&newParentSection);CHKERRQ(ierr);
1159a6f36705SMichael Lange     ierr = PetscSectionSetChart(newParentSection,pStart,pEnd);CHKERRQ(ierr);
1160a6f36705SMichael Lange     ierr = PetscSFDistributeSection(migrationSF, origParentSection, &remoteOffsetsParents, newParentSection);CHKERRQ(ierr);
1161a6f36705SMichael Lange     ierr = PetscSFCreateSectionSF(migrationSF, origParentSection, remoteOffsetsParents, newParentSection, &parentSF);CHKERRQ(ierr);
11628a713f3bSLawrence Mitchell     ierr = PetscFree(remoteOffsetsParents);CHKERRQ(ierr);
1163a6f36705SMichael Lange     ierr = PetscSectionGetStorageSize(newParentSection,&newParentSize);CHKERRQ(ierr);
1164a6f36705SMichael Lange     ierr = PetscMalloc2(newParentSize,&newParents,newParentSize,&newChildIDs);CHKERRQ(ierr);
116508633170SToby Isaac     if (original) {
116608633170SToby Isaac       PetscInt numParents;
116708633170SToby Isaac 
116808633170SToby Isaac       ierr = PetscSectionGetStorageSize(origParentSection,&numParents);CHKERRQ(ierr);
116908633170SToby Isaac       ierr = PetscMalloc1(numParents,&globParents);CHKERRQ(ierr);
117008633170SToby Isaac       ierr = ISLocalToGlobalMappingApplyBlock(original, numParents, origParents, globParents);CHKERRQ(ierr);
117108633170SToby Isaac     }
117208633170SToby Isaac     else {
117308633170SToby Isaac       globParents = origParents;
117408633170SToby Isaac     }
117508633170SToby Isaac     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
117608633170SToby Isaac     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, globParents, newParents);CHKERRQ(ierr);
117708633170SToby Isaac     if (original) {
117808633170SToby Isaac       ierr = PetscFree(globParents);CHKERRQ(ierr);
117908633170SToby Isaac     }
1180a6f36705SMichael Lange     ierr = PetscSFBcastBegin(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1181a6f36705SMichael Lange     ierr = PetscSFBcastEnd(parentSF, MPIU_INT, origChildIDs, newChildIDs);CHKERRQ(ierr);
1182a6f36705SMichael Lange     ierr = ISGlobalToLocalMappingApplyBlock(renumbering,IS_GTOLM_MASK, newParentSize, newParents, NULL, newParents);CHKERRQ(ierr);
118376bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
11844a54e071SToby Isaac       PetscInt  p;
11854a54e071SToby Isaac       PetscBool valid = PETSC_TRUE;
11864a54e071SToby Isaac       for (p = 0; p < newParentSize; ++p) {
11874a54e071SToby Isaac         if (newParents[p] < 0) {valid = PETSC_FALSE; ierr = PetscPrintf(PETSC_COMM_SELF, "Point %d not in overlap SF\n", p);CHKERRQ(ierr);}
11884a54e071SToby Isaac       }
11894a54e071SToby Isaac       if (!valid) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid global to local map");
11904a54e071SToby Isaac     }
1191c5929fdfSBarry Smith     ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-parents_view", &flg);CHKERRQ(ierr);
1192a6f36705SMichael Lange     if (flg) {
1193a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Serial Parent Section: \n");CHKERRQ(ierr);
1194a8c5bd36SStefano Zampini       ierr = PetscSectionView(origParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1195a6f36705SMichael Lange       ierr = PetscPrintf(comm, "Parallel Parent Section: \n");CHKERRQ(ierr);
1196a8c5bd36SStefano Zampini       ierr = PetscSectionView(newParentSection, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1197a6f36705SMichael Lange       ierr = PetscSFView(parentSF, NULL);CHKERRQ(ierr);
1198a6f36705SMichael Lange     }
1199a6f36705SMichael Lange     ierr = DMPlexSetTree(dmParallel,newParentSection,newParents,newChildIDs);CHKERRQ(ierr);
1200a6f36705SMichael Lange     ierr = PetscSectionDestroy(&newParentSection);CHKERRQ(ierr);
1201a6f36705SMichael Lange     ierr = PetscFree2(newParents,newChildIDs);CHKERRQ(ierr);
1202a6f36705SMichael Lange     ierr = PetscSFDestroy(&parentSF);CHKERRQ(ierr);
1203a6f36705SMichael Lange   }
120415078cd4SMichael Lange   pmesh->useAnchors = mesh->useAnchors;
1205a6f36705SMichael Lange   PetscFunctionReturn(0);
1206a6f36705SMichael Lange }
12070df0e737SMichael Lange 
120824cc2ca5SMatthew G. Knepley PETSC_UNUSED static PetscErrorCode DMPlexDistributeSF(DM dm, PetscSF migrationSF, DM dmParallel)
12094eca1733SMichael Lange {
12109852e123SBarry Smith   PetscMPIInt            rank, size;
12114eca1733SMichael Lange   MPI_Comm               comm;
12124eca1733SMichael Lange   PetscErrorCode         ierr;
12134eca1733SMichael Lange 
12144eca1733SMichael Lange   PetscFunctionBegin;
12154eca1733SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
12160c86c063SLisandro Dalcin   PetscValidHeaderSpecific(dmParallel, DM_CLASSID, 3);
12174eca1733SMichael Lange 
12184eca1733SMichael Lange   /* Create point SF for parallel mesh */
12194eca1733SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12204eca1733SMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr);
1221*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
1222*ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
12234eca1733SMichael Lange   {
12244eca1733SMichael Lange     const PetscInt *leaves;
12254eca1733SMichael Lange     PetscSFNode    *remotePoints, *rowners, *lowners;
12264eca1733SMichael Lange     PetscInt        numRoots, numLeaves, numGhostPoints = 0, p, gp, *ghostPoints;
12274eca1733SMichael Lange     PetscInt        pStart, pEnd;
12284eca1733SMichael Lange 
12294eca1733SMichael Lange     ierr = DMPlexGetChart(dmParallel, &pStart, &pEnd);CHKERRQ(ierr);
12304eca1733SMichael Lange     ierr = PetscSFGetGraph(migrationSF, &numRoots, &numLeaves, &leaves, NULL);CHKERRQ(ierr);
12314eca1733SMichael Lange     ierr = PetscMalloc2(numRoots,&rowners,numLeaves,&lowners);CHKERRQ(ierr);
12324eca1733SMichael Lange     for (p=0; p<numRoots; p++) {
12334eca1733SMichael Lange       rowners[p].rank  = -1;
12344eca1733SMichael Lange       rowners[p].index = -1;
12354eca1733SMichael Lange     }
12364eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12374eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12384eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12394eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].rank == rank) { /* Either put in a bid or we know we own it */
12404eca1733SMichael Lange         lowners[p].rank  = rank;
12414eca1733SMichael Lange         lowners[p].index = leaves ? leaves[p] : p;
12424eca1733SMichael Lange       } else if (lowners[p].rank >= 0) { /* Point already claimed so flag so that MAXLOC does not listen to us */
12434eca1733SMichael Lange         lowners[p].rank  = -2;
12444eca1733SMichael Lange         lowners[p].index = -2;
12454eca1733SMichael Lange       }
12464eca1733SMichael Lange     }
12474eca1733SMichael Lange     for (p=0; p<numRoots; p++) { /* Root must not participate in the rediction, flag so that MAXLOC does not use */
12484eca1733SMichael Lange       rowners[p].rank  = -3;
12494eca1733SMichael Lange       rowners[p].index = -3;
12504eca1733SMichael Lange     }
12514eca1733SMichael Lange     ierr = PetscSFReduceBegin(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12524eca1733SMichael Lange     ierr = PetscSFReduceEnd(migrationSF, MPIU_2INT, lowners, rowners, MPI_MAXLOC);CHKERRQ(ierr);
12534eca1733SMichael Lange     ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12544eca1733SMichael Lange     ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rowners, lowners);CHKERRQ(ierr);
12554eca1733SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12564eca1733SMichael Lange       if (lowners[p].rank < 0 || lowners[p].index < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Cell partition corrupt: point not claimed");
12574eca1733SMichael Lange       if (lowners[p].rank != rank) ++numGhostPoints;
12584eca1733SMichael Lange     }
12594eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &ghostPoints);CHKERRQ(ierr);
12604eca1733SMichael Lange     ierr = PetscMalloc1(numGhostPoints, &remotePoints);CHKERRQ(ierr);
12614eca1733SMichael Lange     for (p = 0, gp = 0; p < numLeaves; ++p) {
12624eca1733SMichael Lange       if (lowners[p].rank != rank) {
12634eca1733SMichael Lange         ghostPoints[gp]        = leaves ? leaves[p] : p;
12644eca1733SMichael Lange         remotePoints[gp].rank  = lowners[p].rank;
12654eca1733SMichael Lange         remotePoints[gp].index = lowners[p].index;
12664eca1733SMichael Lange         ++gp;
12674eca1733SMichael Lange       }
12684eca1733SMichael Lange     }
12694eca1733SMichael Lange     ierr = PetscFree2(rowners,lowners);CHKERRQ(ierr);
12704eca1733SMichael Lange     ierr = PetscSFSetGraph((dmParallel)->sf, pEnd - pStart, numGhostPoints, ghostPoints, PETSC_OWN_POINTER, remotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr);
12714eca1733SMichael Lange     ierr = PetscSFSetFromOptions((dmParallel)->sf);CHKERRQ(ierr);
12724eca1733SMichael Lange   }
12731cf84007SMatthew G. Knepley   {
12741cf84007SMatthew G. Knepley     PetscBool useCone, useClosure, useAnchors;
12751cf84007SMatthew G. Knepley 
1276b0441da4SMatthew G. Knepley     ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr);
1277b0441da4SMatthew G. Knepley     ierr = DMSetBasicAdjacency(dmParallel, useCone, useClosure);CHKERRQ(ierr);
12781cf84007SMatthew G. Knepley     ierr = DMPlexGetAdjacencyUseAnchors(dm, &useAnchors);CHKERRQ(ierr);
12791cf84007SMatthew G. Knepley     ierr = DMPlexSetAdjacencyUseAnchors(dmParallel, useAnchors);CHKERRQ(ierr);
12801cf84007SMatthew G. Knepley   }
12814eca1733SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeSF,dm,0,0,0);CHKERRQ(ierr);
12824eca1733SMichael Lange   PetscFunctionReturn(0);
12834eca1733SMichael Lange }
12844eca1733SMichael Lange 
128598ba2d7fSLawrence Mitchell /*@
128698ba2d7fSLawrence Mitchell   DMPlexSetPartitionBalance - Should distribution of the DM attempt to balance the shared point partition?
128798ba2d7fSLawrence Mitchell 
128898ba2d7fSLawrence Mitchell   Input Parameters:
128998ba2d7fSLawrence Mitchell + dm - The DMPlex object
129098ba2d7fSLawrence Mitchell - flg - Balance the partition?
129198ba2d7fSLawrence Mitchell 
129298ba2d7fSLawrence Mitchell   Level: intermediate
129398ba2d7fSLawrence Mitchell 
129498ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexGetPartitionBalance()
129598ba2d7fSLawrence Mitchell @*/
129698ba2d7fSLawrence Mitchell PetscErrorCode DMPlexSetPartitionBalance(DM dm, PetscBool flg)
129798ba2d7fSLawrence Mitchell {
129898ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
129998ba2d7fSLawrence Mitchell 
130098ba2d7fSLawrence Mitchell   PetscFunctionBegin;
130198ba2d7fSLawrence Mitchell   mesh->partitionBalance = flg;
130298ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
130398ba2d7fSLawrence Mitchell }
130498ba2d7fSLawrence Mitchell 
130598ba2d7fSLawrence Mitchell /*@
130698ba2d7fSLawrence Mitchell   DMPlexGetPartitionBalance - Does distribution of the DM attempt to balance the shared point partition?
130798ba2d7fSLawrence Mitchell 
130898ba2d7fSLawrence Mitchell   Input Parameter:
1309a2b725a8SWilliam Gropp . dm - The DMPlex object
131098ba2d7fSLawrence Mitchell 
131198ba2d7fSLawrence Mitchell   Output Parameter:
1312a2b725a8SWilliam Gropp . flg - Balance the partition?
131398ba2d7fSLawrence Mitchell 
131498ba2d7fSLawrence Mitchell   Level: intermediate
131598ba2d7fSLawrence Mitchell 
131698ba2d7fSLawrence Mitchell .seealso: DMPlexDistribute(), DMPlexSetPartitionBalance()
131798ba2d7fSLawrence Mitchell @*/
131898ba2d7fSLawrence Mitchell PetscErrorCode DMPlexGetPartitionBalance(DM dm, PetscBool *flg)
131998ba2d7fSLawrence Mitchell {
132098ba2d7fSLawrence Mitchell   DM_Plex *mesh = (DM_Plex *)dm->data;
132198ba2d7fSLawrence Mitchell 
132298ba2d7fSLawrence Mitchell   PetscFunctionBegin;
132398ba2d7fSLawrence Mitchell   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1324534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
132598ba2d7fSLawrence Mitchell   *flg = mesh->partitionBalance;
132698ba2d7fSLawrence Mitchell   PetscFunctionReturn(0);
132798ba2d7fSLawrence Mitchell }
132898ba2d7fSLawrence Mitchell 
1329fc02256fSLawrence Mitchell typedef struct {
1330fc02256fSLawrence Mitchell   PetscInt vote, rank, index;
1331fc02256fSLawrence Mitchell } Petsc3Int;
1332fc02256fSLawrence Mitchell 
1333fc02256fSLawrence Mitchell /* MaxLoc, but carry a third piece of information around */
13342eb0eadbSSatish Balay static void MPIAPI MaxLocCarry(void *in_, void *inout_, PetscMPIInt *len_, MPI_Datatype *dtype)
1335fc02256fSLawrence Mitchell {
1336fc02256fSLawrence Mitchell   Petsc3Int *a = (Petsc3Int *)inout_;
1337fc02256fSLawrence Mitchell   Petsc3Int *b = (Petsc3Int *)in_;
1338fc02256fSLawrence Mitchell   PetscInt i, len = *len_;
1339fc02256fSLawrence Mitchell   for (i = 0; i < len; i++) {
1340fc02256fSLawrence Mitchell     if (a[i].vote < b[i].vote) {
1341fc02256fSLawrence Mitchell       a[i].vote = b[i].vote;
1342fc02256fSLawrence Mitchell       a[i].rank = b[i].rank;
1343fc02256fSLawrence Mitchell       a[i].index = b[i].index;
1344fc02256fSLawrence Mitchell     } else if (a[i].vote <= b[i].vote) {
1345fc02256fSLawrence Mitchell       if (a[i].rank >= b[i].rank) {
1346fc02256fSLawrence Mitchell         a[i].rank = b[i].rank;
1347fc02256fSLawrence Mitchell         a[i].index = b[i].index;
1348fc02256fSLawrence Mitchell       }
1349fc02256fSLawrence Mitchell     }
1350fc02256fSLawrence Mitchell   }
1351fc02256fSLawrence Mitchell }
1352fc02256fSLawrence Mitchell 
1353f5bf2dbfSMichael Lange /*@C
1354a8c5bd36SStefano Zampini   DMPlexCreatePointSF - Build a point SF from an SF describing a point migration
1355f5bf2dbfSMichael Lange 
1356064ec1f3Sprj-   Input Parameters:
1357f5bf2dbfSMichael Lange + dm          - The source DMPlex object
1358f5bf2dbfSMichael Lange . migrationSF - The star forest that describes the parallel point remapping
13591627f6ccSMichael Lange . ownership   - Flag causing a vote to determine point ownership
1360f5bf2dbfSMichael Lange 
1361f5bf2dbfSMichael Lange   Output Parameter:
1362f5bf2dbfSMichael Lange - pointSF     - The star forest describing the point overlap in the remapped DM
1363f5bf2dbfSMichael Lange 
13643618482eSVaclav Hapla   Notes:
13653618482eSVaclav Hapla   Output pointSF is guaranteed to have the array of local indices (leaves) sorted.
13663618482eSVaclav Hapla 
1367f5bf2dbfSMichael Lange   Level: developer
1368f5bf2dbfSMichael Lange 
1369f5bf2dbfSMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
1370f5bf2dbfSMichael Lange @*/
1371f5bf2dbfSMichael Lange PetscErrorCode DMPlexCreatePointSF(DM dm, PetscSF migrationSF, PetscBool ownership, PetscSF *pointSF)
1372f5bf2dbfSMichael Lange {
137323193802SMatthew G. Knepley   PetscMPIInt        rank, size;
13741627f6ccSMichael Lange   PetscInt           p, nroots, nleaves, idx, npointLeaves;
1375f5bf2dbfSMichael Lange   PetscInt          *pointLocal;
1376f5bf2dbfSMichael Lange   const PetscInt    *leaves;
1377f5bf2dbfSMichael Lange   const PetscSFNode *roots;
1378f5bf2dbfSMichael Lange   PetscSFNode       *rootNodes, *leafNodes, *pointRemote;
137923193802SMatthew G. Knepley   Vec                shifts;
1380cae3e4f3SLawrence Mitchell   const PetscInt     numShifts = 13759;
138123193802SMatthew G. Knepley   const PetscScalar *shift = NULL;
138223193802SMatthew G. Knepley   const PetscBool    shiftDebug = PETSC_FALSE;
138398ba2d7fSLawrence Mitchell   PetscBool          balance;
1384f5bf2dbfSMichael Lange   PetscErrorCode     ierr;
1385f5bf2dbfSMichael Lange 
1386f5bf2dbfSMichael Lange   PetscFunctionBegin;
1387f5bf2dbfSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1388*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRMPI(ierr);
1389*ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRMPI(ierr);
139030b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1391f5bf2dbfSMichael Lange 
139298ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
1393f5bf2dbfSMichael Lange   ierr = PetscSFGetGraph(migrationSF, &nroots, &nleaves, &leaves, &roots);CHKERRQ(ierr);
1394f5bf2dbfSMichael Lange   ierr = PetscMalloc2(nroots, &rootNodes, nleaves, &leafNodes);CHKERRQ(ierr);
1395f5bf2dbfSMichael Lange   if (ownership) {
1396fc02256fSLawrence Mitchell     MPI_Op       op;
1397fc02256fSLawrence Mitchell     MPI_Datatype datatype;
1398fc02256fSLawrence Mitchell     Petsc3Int   *rootVote = NULL, *leafVote = NULL;
139923193802SMatthew G. Knepley     /* If balancing, we compute a random cyclic shift of the rank for each remote point. That way, the max will evenly distribute among ranks. */
140098ba2d7fSLawrence Mitchell     if (balance) {
140123193802SMatthew G. Knepley       PetscRandom r;
140223193802SMatthew G. Knepley 
140323193802SMatthew G. Knepley       ierr = PetscRandomCreate(PETSC_COMM_SELF, &r);CHKERRQ(ierr);
1404cae3e4f3SLawrence Mitchell       ierr = PetscRandomSetInterval(r, 0, 2467*size);CHKERRQ(ierr);
140523193802SMatthew G. Knepley       ierr = VecCreate(PETSC_COMM_SELF, &shifts);CHKERRQ(ierr);
140623193802SMatthew G. Knepley       ierr = VecSetSizes(shifts, numShifts, numShifts);CHKERRQ(ierr);
140723193802SMatthew G. Knepley       ierr = VecSetType(shifts, VECSTANDARD);CHKERRQ(ierr);
140823193802SMatthew G. Knepley       ierr = VecSetRandom(shifts, r);CHKERRQ(ierr);
140923193802SMatthew G. Knepley       ierr = PetscRandomDestroy(&r);CHKERRQ(ierr);
141023193802SMatthew G. Knepley       ierr = VecGetArrayRead(shifts, &shift);CHKERRQ(ierr);
141123193802SMatthew G. Knepley     }
141223193802SMatthew G. Knepley 
1413fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nroots, &rootVote);CHKERRQ(ierr);
1414fc02256fSLawrence Mitchell     ierr = PetscMalloc1(nleaves, &leafVote);CHKERRQ(ierr);
141523193802SMatthew G. Knepley     /* Point ownership vote: Process with highest rank owns shared points */
1416f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; ++p) {
141723193802SMatthew G. Knepley       if (shiftDebug) {
1418e7bcd635SMatthew G. Knepley         ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Point %D RemotePoint %D Shift %D MyRank %D\n", rank, leaves ? leaves[p] : p, roots[p].index, (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]), (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size);CHKERRQ(ierr);
141923193802SMatthew G. Knepley       }
1420f5bf2dbfSMichael Lange       /* Either put in a bid or we know we own it */
1421fc02256fSLawrence Mitchell       leafVote[p].vote  = (rank + (shift ? (PetscInt) PetscRealPart(shift[roots[p].index%numShifts]) : 0))%size;
1422fc02256fSLawrence Mitchell       leafVote[p].rank = rank;
1423fc02256fSLawrence Mitchell       leafVote[p].index = p;
1424f5bf2dbfSMichael Lange     }
1425f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
14261627f6ccSMichael Lange       /* Root must not participate in the reduction, flag so that MAXLOC does not use */
1427fc02256fSLawrence Mitchell       rootVote[p].vote  = -3;
1428fc02256fSLawrence Mitchell       rootVote[p].rank  = -3;
1429fc02256fSLawrence Mitchell       rootVote[p].index = -3;
1430f5bf2dbfSMichael Lange     }
1431*ffc4695bSBarry Smith     ierr = MPI_Type_contiguous(3, MPIU_INT, &datatype);CHKERRMPI(ierr);
1432*ffc4695bSBarry Smith     ierr = MPI_Type_commit(&datatype);CHKERRMPI(ierr);
1433*ffc4695bSBarry Smith     ierr = MPI_Op_create(&MaxLocCarry, 1, &op);CHKERRMPI(ierr);
1434fc02256fSLawrence Mitchell     ierr = PetscSFReduceBegin(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1435fc02256fSLawrence Mitchell     ierr = PetscSFReduceEnd(migrationSF, datatype, leafVote, rootVote, op);CHKERRQ(ierr);
1436*ffc4695bSBarry Smith     ierr = MPI_Op_free(&op);CHKERRMPI(ierr);
1437*ffc4695bSBarry Smith     ierr = MPI_Type_free(&datatype);CHKERRMPI(ierr);
1438c091126eSLawrence Mitchell     for (p = 0; p < nroots; p++) {
1439fc02256fSLawrence Mitchell       rootNodes[p].rank = rootVote[p].rank;
1440fc02256fSLawrence Mitchell       rootNodes[p].index = rootVote[p].index;
1441c091126eSLawrence Mitchell     }
1442fc02256fSLawrence Mitchell     ierr = PetscFree(leafVote);CHKERRQ(ierr);
1443fc02256fSLawrence Mitchell     ierr = PetscFree(rootVote);CHKERRQ(ierr);
1444f5bf2dbfSMichael Lange   } else {
1445f5bf2dbfSMichael Lange     for (p = 0; p < nroots; p++) {
1446f5bf2dbfSMichael Lange       rootNodes[p].index = -1;
1447f5bf2dbfSMichael Lange       rootNodes[p].rank = rank;
1448fc02256fSLawrence Mitchell     }
1449f5bf2dbfSMichael Lange     for (p = 0; p < nleaves; p++) {
1450f5bf2dbfSMichael Lange       /* Write new local id into old location */
1451f5bf2dbfSMichael Lange       if (roots[p].rank == rank) {
14526462276dSToby Isaac         rootNodes[roots[p].index].index = leaves ? leaves[p] : p;
1453f5bf2dbfSMichael Lange       }
1454f5bf2dbfSMichael Lange     }
1455f5bf2dbfSMichael Lange   }
1456f5bf2dbfSMichael Lange   ierr = PetscSFBcastBegin(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1457f5bf2dbfSMichael Lange   ierr = PetscSFBcastEnd(migrationSF, MPIU_2INT, rootNodes, leafNodes);CHKERRQ(ierr);
1458f5bf2dbfSMichael Lange 
145923193802SMatthew G. Knepley   for (npointLeaves = 0, p = 0; p < nleaves; p++) {
1460b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) npointLeaves++;
146123193802SMatthew G. Knepley   }
14621627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointLocal);CHKERRQ(ierr);
14631627f6ccSMichael Lange   ierr = PetscMalloc1(npointLeaves, &pointRemote);CHKERRQ(ierr);
1464f5bf2dbfSMichael Lange   for (idx = 0, p = 0; p < nleaves; p++) {
1465b0e1264bSMatthew G. Knepley     if (leafNodes[p].rank != rank) {
14663618482eSVaclav Hapla       /* Note that pointLocal is automatically sorted as it is sublist of 0, ..., nleaves-1 */
1467f5bf2dbfSMichael Lange       pointLocal[idx] = p;
1468f5bf2dbfSMichael Lange       pointRemote[idx] = leafNodes[p];
1469f5bf2dbfSMichael Lange       idx++;
1470f5bf2dbfSMichael Lange     }
1471f5bf2dbfSMichael Lange   }
147223193802SMatthew G. Knepley   if (shift) {
147323193802SMatthew G. Knepley     ierr = VecRestoreArrayRead(shifts, &shift);CHKERRQ(ierr);
147423193802SMatthew G. Knepley     ierr = VecDestroy(&shifts);CHKERRQ(ierr);
147523193802SMatthew G. Knepley   }
147623193802SMatthew G. Knepley   if (shiftDebug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), PETSC_STDOUT);CHKERRQ(ierr);}
1477f5bf2dbfSMichael Lange   ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), pointSF);CHKERRQ(ierr);
14781627f6ccSMichael Lange   ierr = PetscSFSetFromOptions(*pointSF);CHKERRQ(ierr);
1479f5bf2dbfSMichael Lange   ierr = PetscSFSetGraph(*pointSF, nleaves, npointLeaves, pointLocal, PETSC_OWN_POINTER, pointRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
1480f5bf2dbfSMichael Lange   ierr = PetscFree2(rootNodes, leafNodes);CHKERRQ(ierr);
148130b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_CreatePointSF,dm,0,0,0);CHKERRQ(ierr);
1482f5bf2dbfSMichael Lange   PetscFunctionReturn(0);
1483f5bf2dbfSMichael Lange }
1484f5bf2dbfSMichael Lange 
148515078cd4SMichael Lange /*@C
148615078cd4SMichael Lange   DMPlexMigrate  - Migrates internal DM data over the supplied star forest
148715078cd4SMichael Lange 
1488d083f849SBarry Smith   Collective on dm
148983655b49SVáclav Hapla 
1490064ec1f3Sprj-   Input Parameters:
149115078cd4SMichael Lange + dm       - The source DMPlex object
14921627f6ccSMichael Lange . sf       - The star forest communication context describing the migration pattern
149315078cd4SMichael Lange 
149415078cd4SMichael Lange   Output Parameter:
149515078cd4SMichael Lange - targetDM - The target DMPlex object
149615078cd4SMichael Lange 
1497b9f40539SMichael Lange   Level: intermediate
149815078cd4SMichael Lange 
149915078cd4SMichael Lange .seealso: DMPlexDistribute(), DMPlexDistributeOverlap()
150015078cd4SMichael Lange @*/
1501b9f40539SMichael Lange PetscErrorCode DMPlexMigrate(DM dm, PetscSF sf, DM targetDM)
150215078cd4SMichael Lange {
1503b9f40539SMichael Lange   MPI_Comm               comm;
1504cc1750acSStefano Zampini   PetscInt               dim, cdim, nroots;
1505b9f40539SMichael Lange   PetscSF                sfPoint;
150615078cd4SMichael Lange   ISLocalToGlobalMapping ltogMigration;
1507ac04eaf7SToby Isaac   ISLocalToGlobalMapping ltogOriginal = NULL;
1508b9f40539SMichael Lange   PetscBool              flg;
150915078cd4SMichael Lange   PetscErrorCode         ierr;
151015078cd4SMichael Lange 
151115078cd4SMichael Lange   PetscFunctionBegin;
151215078cd4SMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15131b858b30SMichael Lange   ierr = PetscLogEventBegin(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
1514b9f40539SMichael Lange   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
151515078cd4SMichael Lange   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
151615078cd4SMichael Lange   ierr = DMSetDimension(targetDM, dim);CHKERRQ(ierr);
1517cc1750acSStefano Zampini   ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr);
1518cc1750acSStefano Zampini   ierr = DMSetCoordinateDim(targetDM, cdim);CHKERRQ(ierr);
151915078cd4SMichael Lange 
1520bfb0467fSMichael Lange   /* Check for a one-to-all distribution pattern */
1521b9f40539SMichael Lange   ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
1522b9f40539SMichael Lange   ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
1523bfb0467fSMichael Lange   if (nroots >= 0) {
1524b9f40539SMichael Lange     IS        isOriginal;
1525ac04eaf7SToby Isaac     PetscInt  n, size, nleaves;
1526ac04eaf7SToby Isaac     PetscInt  *numbering_orig, *numbering_new;
1527367003a6SStefano Zampini 
1528b9f40539SMichael Lange     /* Get the original point numbering */
1529b9f40539SMichael Lange     ierr = DMPlexCreatePointNumbering(dm, &isOriginal);CHKERRQ(ierr);
1530b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingCreateIS(isOriginal, &ltogOriginal);CHKERRQ(ierr);
1531b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetSize(ltogOriginal, &size);CHKERRQ(ierr);
1532b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingGetBlockIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1533b9f40539SMichael Lange     /* Convert to positive global numbers */
1534b9f40539SMichael Lange     for (n=0; n<size; n++) {if (numbering_orig[n] < 0) numbering_orig[n] = -(numbering_orig[n]+1);}
1535b9f40539SMichael Lange     /* Derive the new local-to-global mapping from the old one */
1536b9f40539SMichael Lange     ierr = PetscSFGetGraph(sf, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
1537b9f40539SMichael Lange     ierr = PetscMalloc1(nleaves, &numbering_new);CHKERRQ(ierr);
15386e0288c8SStefano Zampini     ierr = PetscSFBcastBegin(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr);
15396e0288c8SStefano Zampini     ierr = PetscSFBcastEnd(sf, MPIU_INT, numbering_orig, numbering_new);CHKERRQ(ierr);
15406e0288c8SStefano Zampini     ierr = ISLocalToGlobalMappingCreate(comm, 1, nleaves, numbering_new, PETSC_OWN_POINTER, &ltogMigration);CHKERRQ(ierr);
1541b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingRestoreIndices(ltogOriginal, (const PetscInt**)&numbering_orig);CHKERRQ(ierr);
1542b9f40539SMichael Lange     ierr = ISDestroy(&isOriginal);CHKERRQ(ierr);
154315078cd4SMichael Lange   } else {
1544bfb0467fSMichael Lange     /* One-to-all distribution pattern: We can derive LToG from SF */
154515078cd4SMichael Lange     ierr = ISLocalToGlobalMappingCreateSF(sf, 0, &ltogMigration);CHKERRQ(ierr);
154615078cd4SMichael Lange   }
1547c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
1548b9f40539SMichael Lange   if (flg) {
1549b9f40539SMichael Lange     ierr = PetscPrintf(comm, "Point renumbering for DM migration:\n");CHKERRQ(ierr);
1550b9f40539SMichael Lange     ierr = ISLocalToGlobalMappingView(ltogMigration, NULL);CHKERRQ(ierr);
1551b9f40539SMichael Lange   }
155215078cd4SMichael Lange   /* Migrate DM data to target DM */
1553ac04eaf7SToby Isaac   ierr = DMPlexDistributeCones(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
155415078cd4SMichael Lange   ierr = DMPlexDistributeLabels(dm, sf, targetDM);CHKERRQ(ierr);
15550dc1530dSSander Arens   ierr = DMPlexDistributeCoordinates(dm, sf, targetDM);CHKERRQ(ierr);
155608633170SToby Isaac   ierr = DMPlexDistributeSetupTree(dm, sf, ltogOriginal, ltogMigration, targetDM);CHKERRQ(ierr);
1557ac04eaf7SToby Isaac   ierr = ISLocalToGlobalMappingDestroy(&ltogOriginal);CHKERRQ(ierr);
1558302440fdSBarry Smith   ierr = ISLocalToGlobalMappingDestroy(&ltogMigration);CHKERRQ(ierr);
15591b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_Migrate, dm, 0, 0, 0);CHKERRQ(ierr);
156015078cd4SMichael Lange   PetscFunctionReturn(0);
156115078cd4SMichael Lange }
156215078cd4SMichael Lange 
15633b8f15a2SMatthew G. Knepley /*@C
156470034214SMatthew G. Knepley   DMPlexDistribute - Distributes the mesh and any associated sections.
156570034214SMatthew G. Knepley 
1566d083f849SBarry Smith   Collective on dm
156770034214SMatthew G. Knepley 
1568064ec1f3Sprj-   Input Parameters:
156970034214SMatthew G. Knepley + dm  - The original DMPlex object
157070034214SMatthew G. Knepley - overlap - The overlap of partitions, 0 is the default
157170034214SMatthew G. Knepley 
1572064ec1f3Sprj-   Output Parameters:
1573f4ae5380SJed Brown + sf - The PetscSF used for point distribution, or NULL if not needed
1574f4ae5380SJed Brown - dmParallel - The distributed DMPlex object
157570034214SMatthew G. Knepley 
1576f4ae5380SJed Brown   Note: If the mesh was not distributed, the output dmParallel will be NULL.
157770034214SMatthew G. Knepley 
1578b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
157970034214SMatthew G. Knepley   representation on the mesh.
158070034214SMatthew G. Knepley 
158170034214SMatthew G. Knepley   Level: intermediate
158270034214SMatthew G. Knepley 
1583cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexGetOverlap()
158470034214SMatthew G. Knepley @*/
158580cf41d5SMatthew G. Knepley PetscErrorCode DMPlexDistribute(DM dm, PetscInt overlap, PetscSF *sf, DM *dmParallel)
158670034214SMatthew G. Knepley {
158770034214SMatthew G. Knepley   MPI_Comm               comm;
158815078cd4SMichael Lange   PetscPartitioner       partitioner;
1589f8987ae8SMichael Lange   IS                     cellPart;
1590f8987ae8SMichael Lange   PetscSection           cellPartSection;
1591cf86098cSMatthew G. Knepley   DM                     dmCoord;
1592f8987ae8SMichael Lange   DMLabel                lblPartition, lblMigration;
1593874ddda9SLisandro Dalcin   PetscSF                sfMigration, sfStratified, sfPoint;
159498ba2d7fSLawrence Mitchell   PetscBool              flg, balance;
1595874ddda9SLisandro Dalcin   PetscMPIInt            rank, size;
159670034214SMatthew G. Knepley   PetscErrorCode         ierr;
159770034214SMatthew G. Knepley 
159870034214SMatthew G. Knepley   PetscFunctionBegin;
159970034214SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1600d5c515a1SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1601d5c515a1SMatthew G. Knepley   if (sf) PetscValidPointer(sf,3);
1602d5c515a1SMatthew G. Knepley   PetscValidPointer(dmParallel,4);
160370034214SMatthew G. Knepley 
16040c86c063SLisandro Dalcin   if (sf) *sf = NULL;
16050c86c063SLisandro Dalcin   *dmParallel = NULL;
160670034214SMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
1607*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
1608*ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
16090c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
161070034214SMatthew G. Knepley 
16110c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
161215078cd4SMichael Lange   /* Create cell partition */
161367eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
161477623264SMatthew G. Knepley   ierr = PetscSectionCreate(comm, &cellPartSection);CHKERRQ(ierr);
161515078cd4SMichael Lange   ierr = DMPlexGetPartitioner(dm, &partitioner);CHKERRQ(ierr);
16163c41b853SStefano Zampini   ierr = PetscPartitionerDMPlexPartition(partitioner, dm, NULL, cellPartSection, &cellPart);CHKERRQ(ierr);
161730b0ce1bSStefano Zampini   ierr = PetscLogEventBegin(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
1618f8987ae8SMichael Lange   {
1619f8987ae8SMichael Lange     /* Convert partition to DMLabel */
1620825f8a23SLisandro Dalcin     IS             is;
1621825f8a23SLisandro Dalcin     PetscHSetI     ht;
1622f8987ae8SMichael Lange     const PetscInt *points;
16238e330a33SStefano Zampini     PetscInt       *iranks;
16248e330a33SStefano Zampini     PetscInt       pStart, pEnd, proc, npoints, poff = 0, nranks;
1625825f8a23SLisandro Dalcin 
1626d67d17b1SMatthew G. Knepley     ierr = DMLabelCreate(PETSC_COMM_SELF, "Point Partition", &lblPartition);CHKERRQ(ierr);
1627825f8a23SLisandro Dalcin     /* Preallocate strata */
1628825f8a23SLisandro Dalcin     ierr = PetscHSetICreate(&ht);CHKERRQ(ierr);
1629825f8a23SLisandro Dalcin     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1630825f8a23SLisandro Dalcin     for (proc = pStart; proc < pEnd; proc++) {
1631825f8a23SLisandro Dalcin       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1632825f8a23SLisandro Dalcin       if (npoints) {ierr = PetscHSetIAdd(ht, proc);CHKERRQ(ierr);}
1633825f8a23SLisandro Dalcin     }
1634825f8a23SLisandro Dalcin     ierr = PetscHSetIGetSize(ht, &nranks);CHKERRQ(ierr);
1635825f8a23SLisandro Dalcin     ierr = PetscMalloc1(nranks, &iranks);CHKERRQ(ierr);
1636825f8a23SLisandro Dalcin     ierr = PetscHSetIGetElems(ht, &poff, iranks);CHKERRQ(ierr);
1637825f8a23SLisandro Dalcin     ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr);
1638825f8a23SLisandro Dalcin     ierr = DMLabelAddStrata(lblPartition, nranks, iranks);CHKERRQ(ierr);
1639825f8a23SLisandro Dalcin     ierr = PetscFree(iranks);CHKERRQ(ierr);
1640825f8a23SLisandro Dalcin     /* Inline DMPlexPartitionLabelClosure() */
1641f8987ae8SMichael Lange     ierr = ISGetIndices(cellPart, &points);CHKERRQ(ierr);
1642f8987ae8SMichael Lange     ierr = PetscSectionGetChart(cellPartSection, &pStart, &pEnd);CHKERRQ(ierr);
1643f8987ae8SMichael Lange     for (proc = pStart; proc < pEnd; proc++) {
1644f8987ae8SMichael Lange       ierr = PetscSectionGetDof(cellPartSection, proc, &npoints);CHKERRQ(ierr);
1645825f8a23SLisandro Dalcin       if (!npoints) continue;
1646825f8a23SLisandro Dalcin       ierr = PetscSectionGetOffset(cellPartSection, proc, &poff);CHKERRQ(ierr);
16478e330a33SStefano Zampini       ierr = DMPlexClosurePoints_Private(dm, npoints, points+poff, &is);CHKERRQ(ierr);
1648825f8a23SLisandro Dalcin       ierr = DMLabelSetStratumIS(lblPartition, proc, is);CHKERRQ(ierr);
1649825f8a23SLisandro Dalcin       ierr = ISDestroy(&is);CHKERRQ(ierr);
1650f8987ae8SMichael Lange     }
1651f8987ae8SMichael Lange     ierr = ISRestoreIndices(cellPart, &points);CHKERRQ(ierr);
1652f8987ae8SMichael Lange   }
165330b0ce1bSStefano Zampini   ierr = PetscLogEventEnd(DMPLEX_PartSelf,dm,0,0,0);CHKERRQ(ierr);
16546e203dd9SStefano Zampini 
1655d67d17b1SMatthew G. Knepley   ierr = DMLabelCreate(PETSC_COMM_SELF, "Point migration", &lblMigration);CHKERRQ(ierr);
1656874ddda9SLisandro Dalcin   ierr = DMPlexPartitionLabelInvert(dm, lblPartition, NULL, lblMigration);CHKERRQ(ierr);
1657302440fdSBarry Smith   ierr = DMPlexPartitionLabelCreateSF(dm, lblMigration, &sfMigration);CHKERRQ(ierr);
165843f7d02bSMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfMigration, &sfStratified);CHKERRQ(ierr);
165943f7d02bSMichael Lange   ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
166043f7d02bSMichael Lange   sfMigration = sfStratified;
166130b0ce1bSStefano Zampini   ierr = PetscSFSetUp(sfMigration);CHKERRQ(ierr);
166267eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1663c5929fdfSBarry Smith   ierr = PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-partition_view", &flg);CHKERRQ(ierr);
166470034214SMatthew G. Knepley   if (flg) {
1665a8c5bd36SStefano Zampini     ierr = DMLabelView(lblPartition, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
1666a8c5bd36SStefano Zampini     ierr = PetscSFView(sfMigration, PETSC_VIEWER_STDOUT_(comm));CHKERRQ(ierr);
166770034214SMatthew G. Knepley   }
1668f8987ae8SMichael Lange 
166915078cd4SMichael Lange   /* Create non-overlapping parallel DM and migrate internal data */
167070034214SMatthew G. Knepley   ierr = DMPlexCreate(comm, dmParallel);CHKERRQ(ierr);
167170034214SMatthew G. Knepley   ierr = PetscObjectSetName((PetscObject) *dmParallel, "Parallel Mesh");CHKERRQ(ierr);
1672b9f40539SMichael Lange   ierr = DMPlexMigrate(dm, sfMigration, *dmParallel);CHKERRQ(ierr);
167370034214SMatthew G. Knepley 
1674a157612eSMichael Lange   /* Build the point SF without overlap */
167598ba2d7fSLawrence Mitchell   ierr = DMPlexGetPartitionBalance(dm, &balance);CHKERRQ(ierr);
167698ba2d7fSLawrence Mitchell   ierr = DMPlexSetPartitionBalance(*dmParallel, balance);CHKERRQ(ierr);
16771627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmParallel, sfMigration, PETSC_TRUE, &sfPoint);CHKERRQ(ierr);
1678f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmParallel, sfPoint);CHKERRQ(ierr);
1679cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmParallel, &dmCoord);CHKERRQ(ierr);
1680cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1681a8c5bd36SStefano Zampini   if (flg) {ierr = PetscSFView(sfPoint, NULL);CHKERRQ(ierr);}
168270034214SMatthew G. Knepley 
1683a157612eSMichael Lange   if (overlap > 0) {
168415078cd4SMichael Lange     DM                 dmOverlap;
168557f290daSMatthew G. Knepley     PetscInt           nroots, nleaves, noldleaves, l;
168657f290daSMatthew G. Knepley     const PetscInt    *oldLeaves;
168757f290daSMatthew G. Knepley     PetscSFNode       *newRemote, *permRemote;
168815078cd4SMichael Lange     const PetscSFNode *oldRemote;
168915078cd4SMichael Lange     PetscSF            sfOverlap, sfOverlapPoint;
1690524e35f8SStefano Zampini 
1691a157612eSMichael Lange     /* Add the partition overlap to the distributed DM */
1692b9f40539SMichael Lange     ierr = DMPlexDistributeOverlap(*dmParallel, overlap, &sfOverlap, &dmOverlap);CHKERRQ(ierr);
1693a157612eSMichael Lange     ierr = DMDestroy(dmParallel);CHKERRQ(ierr);
1694a157612eSMichael Lange     *dmParallel = dmOverlap;
1695c389ea9fSToby Isaac     if (flg) {
16963d822a50SMichael Lange       ierr = PetscPrintf(comm, "Overlap Migration SF:\n");CHKERRQ(ierr);
169715078cd4SMichael Lange       ierr = PetscSFView(sfOverlap, NULL);CHKERRQ(ierr);
1698c389ea9fSToby Isaac     }
169943331d4aSMichael Lange 
1700f8987ae8SMichael Lange     /* Re-map the migration SF to establish the full migration pattern */
170157f290daSMatthew G. Knepley     ierr = PetscSFGetGraph(sfMigration, &nroots, &noldleaves, &oldLeaves, &oldRemote);CHKERRQ(ierr);
170215078cd4SMichael Lange     ierr = PetscSFGetGraph(sfOverlap, NULL, &nleaves, NULL, NULL);CHKERRQ(ierr);
170343331d4aSMichael Lange     ierr = PetscMalloc1(nleaves, &newRemote);CHKERRQ(ierr);
170457f290daSMatthew G. Knepley     /* oldRemote: original root point mapping to original leaf point
170557f290daSMatthew G. Knepley        newRemote: original leaf point mapping to overlapped leaf point */
170657f290daSMatthew G. Knepley     if (oldLeaves) {
170773e69a6aSMatthew G. Knepley       /* After stratification, the migration remotes may not be in root (canonical) order, so we reorder using the leaf numbering */
170873e69a6aSMatthew G. Knepley       ierr = PetscMalloc1(noldleaves, &permRemote);CHKERRQ(ierr);
170957f290daSMatthew G. Knepley       for (l = 0; l < noldleaves; ++l) permRemote[oldLeaves[l]] = oldRemote[l];
171057f290daSMatthew G. Knepley       oldRemote = permRemote;
171157f290daSMatthew G. Knepley     }
171215078cd4SMichael Lange     ierr = PetscSFBcastBegin(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
171315078cd4SMichael Lange     ierr = PetscSFBcastEnd(sfOverlap, MPIU_2INT, oldRemote, newRemote);CHKERRQ(ierr);
171457f290daSMatthew G. Knepley     if (oldLeaves) {ierr = PetscFree(oldRemote);CHKERRQ(ierr);}
171515078cd4SMichael Lange     ierr = PetscSFCreate(comm, &sfOverlapPoint);CHKERRQ(ierr);
171615078cd4SMichael Lange     ierr = PetscSFSetGraph(sfOverlapPoint, nroots, nleaves, NULL, PETSC_OWN_POINTER, newRemote, PETSC_OWN_POINTER);CHKERRQ(ierr);
171715078cd4SMichael Lange     ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1718f8987ae8SMichael Lange     ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);
171915078cd4SMichael Lange     sfMigration = sfOverlapPoint;
1720c389ea9fSToby Isaac   }
1721bf5244c7SMatthew G. Knepley   /* Cleanup Partition */
1722f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblPartition);CHKERRQ(ierr);
1723f8987ae8SMichael Lange   ierr = DMLabelDestroy(&lblMigration);CHKERRQ(ierr);
17244eca1733SMichael Lange   ierr = PetscSectionDestroy(&cellPartSection);CHKERRQ(ierr);
17254eca1733SMichael Lange   ierr = ISDestroy(&cellPart);CHKERRQ(ierr);
1726721cbd76SMatthew G. Knepley   /* Copy BC */
1727a6ba4734SToby Isaac   ierr = DMCopyBoundary(dm, *dmParallel);CHKERRQ(ierr);
172866fe0bfeSMatthew G. Knepley   /* Create sfNatural */
172966fe0bfeSMatthew G. Knepley   if (dm->useNatural) {
173066fe0bfeSMatthew G. Knepley     PetscSection section;
173166fe0bfeSMatthew G. Knepley 
173292fd8e1eSJed Brown     ierr = DMGetLocalSection(dm, &section);CHKERRQ(ierr);
17330c1f158bSMatthew G. Knepley     ierr = DMPlexCreateGlobalToNaturalSF(*dmParallel, section, sfMigration, &(*dmParallel)->sfNatural);CHKERRQ(ierr);
17340e663481SBlaise Bourdin     ierr = DMSetUseNatural(*dmParallel, PETSC_TRUE);CHKERRQ(ierr);
173566fe0bfeSMatthew G. Knepley   }
1736721cbd76SMatthew G. Knepley   /* Cleanup */
1737f8987ae8SMichael Lange   if (sf) {*sf = sfMigration;}
1738f8987ae8SMichael Lange   else    {ierr = PetscSFDestroy(&sfMigration);CHKERRQ(ierr);}
1739f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
174070034214SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Distribute,dm,0,0,0);CHKERRQ(ierr);
174170034214SMatthew G. Knepley   PetscFunctionReturn(0);
174270034214SMatthew G. Knepley }
1743a157612eSMichael Lange 
1744a157612eSMichael Lange /*@C
174524cc2ca5SMatthew G. Knepley   DMPlexDistributeOverlap - Add partition overlap to a distributed non-overlapping DM.
1746a157612eSMichael Lange 
1747d083f849SBarry Smith   Collective on dm
1748a157612eSMichael Lange 
1749064ec1f3Sprj-   Input Parameters:
1750064ec1f3Sprj- + dm  - The non-overlapping distributed DMPlex object
175157fe9a49SVaclav Hapla - overlap - The overlap of partitions (the same on all ranks)
1752a157612eSMichael Lange 
1753064ec1f3Sprj-   Output Parameters:
1754a157612eSMichael Lange + sf - The PetscSF used for point distribution
1755a157612eSMichael Lange - dmOverlap - The overlapping distributed DMPlex object, or NULL
1756a157612eSMichael Lange 
1757dccdeccaSVaclav Hapla   Notes:
1758dccdeccaSVaclav Hapla   If the mesh was not distributed, the return value is NULL.
1759a157612eSMichael Lange 
1760b0441da4SMatthew G. Knepley   The user can control the definition of adjacency for the mesh using DMSetAdjacency(). They should choose the combination appropriate for the function
1761a157612eSMichael Lange   representation on the mesh.
1762a157612eSMichael Lange 
1763dccdeccaSVaclav Hapla   Level: advanced
1764a157612eSMichael Lange 
1765cb54e036SVaclav Hapla .seealso: DMPlexCreate(), DMSetAdjacency(), DMPlexDistribute(), DMPlexCreateOverlapLabel(), DMPlexGetOverlap()
1766a157612eSMichael Lange @*/
1767b9f40539SMichael Lange PetscErrorCode DMPlexDistributeOverlap(DM dm, PetscInt overlap, PetscSF *sf, DM *dmOverlap)
1768a157612eSMichael Lange {
1769a157612eSMichael Lange   MPI_Comm               comm;
17703567eaeeSMatthew G. Knepley   PetscMPIInt            size, rank;
1771a157612eSMichael Lange   PetscSection           rootSection, leafSection;
1772a157612eSMichael Lange   IS                     rootrank, leafrank;
1773cf86098cSMatthew G. Knepley   DM                     dmCoord;
1774a9f1d5b2SMichael Lange   DMLabel                lblOverlap;
1775f5bf2dbfSMichael Lange   PetscSF                sfOverlap, sfStratified, sfPoint;
1776a157612eSMichael Lange   PetscErrorCode         ierr;
1777a157612eSMichael Lange 
1778a157612eSMichael Lange   PetscFunctionBegin;
1779a157612eSMichael Lange   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
178057fe9a49SVaclav Hapla   PetscValidLogicalCollectiveInt(dm, overlap, 2);
1781a157612eSMichael Lange   if (sf) PetscValidPointer(sf, 3);
1782a157612eSMichael Lange   PetscValidPointer(dmOverlap, 4);
1783a157612eSMichael Lange 
17840c86c063SLisandro Dalcin   if (sf) *sf = NULL;
17850c86c063SLisandro Dalcin   *dmOverlap  = NULL;
1786a157612eSMichael Lange   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
1787*ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr);
1788*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr);
17890c86c063SLisandro Dalcin   if (size == 1) PetscFunctionReturn(0);
1790a157612eSMichael Lange 
17910c86c063SLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1792a157612eSMichael Lange   /* Compute point overlap with neighbouring processes on the distributed DM */
179367eb269bSLisandro Dalcin   ierr = PetscLogEventBegin(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1794a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &rootSection);CHKERRQ(ierr);
1795a157612eSMichael Lange   ierr = PetscSectionCreate(comm, &leafSection);CHKERRQ(ierr);
1796a157612eSMichael Lange   ierr = DMPlexDistributeOwnership(dm, rootSection, &rootrank, leafSection, &leafrank);CHKERRQ(ierr);
1797dccdeccaSVaclav Hapla   ierr = DMPlexCreateOverlapLabel(dm, overlap, rootSection, rootrank, leafSection, leafrank, &lblOverlap);CHKERRQ(ierr);
1798a9f1d5b2SMichael Lange   /* Convert overlap label to stratified migration SF */
1799a9f1d5b2SMichael Lange   ierr = DMPlexPartitionLabelCreateSF(dm, lblOverlap, &sfOverlap);CHKERRQ(ierr);
1800a9f1d5b2SMichael Lange   ierr = DMPlexStratifyMigrationSF(dm, sfOverlap, &sfStratified);CHKERRQ(ierr);
1801a9f1d5b2SMichael Lange   ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);
1802a9f1d5b2SMichael Lange   sfOverlap = sfStratified;
1803a9f1d5b2SMichael Lange   ierr = PetscObjectSetName((PetscObject) sfOverlap, "Overlap SF");CHKERRQ(ierr);
1804a9f1d5b2SMichael Lange   ierr = PetscSFSetFromOptions(sfOverlap);CHKERRQ(ierr);
1805a9f1d5b2SMichael Lange 
180615fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&rootSection);CHKERRQ(ierr);
180715fff7beSMatthew G. Knepley   ierr = PetscSectionDestroy(&leafSection);CHKERRQ(ierr);
180815fff7beSMatthew G. Knepley   ierr = ISDestroy(&rootrank);CHKERRQ(ierr);
180915fff7beSMatthew G. Knepley   ierr = ISDestroy(&leafrank);CHKERRQ(ierr);
181067eb269bSLisandro Dalcin   ierr = PetscLogEventEnd(DMPLEX_Partition,dm,0,0,0);CHKERRQ(ierr);
1811a157612eSMichael Lange 
1812a157612eSMichael Lange   /* Build the overlapping DM */
1813a157612eSMichael Lange   ierr = DMPlexCreate(comm, dmOverlap);CHKERRQ(ierr);
1814a157612eSMichael Lange   ierr = PetscObjectSetName((PetscObject) *dmOverlap, "Parallel Mesh");CHKERRQ(ierr);
1815a9f1d5b2SMichael Lange   ierr = DMPlexMigrate(dm, sfOverlap, *dmOverlap);CHKERRQ(ierr);
1816cb54e036SVaclav Hapla   /* Store the overlap in the new DM */
1817cb54e036SVaclav Hapla   ((DM_Plex*)(*dmOverlap)->data)->overlap = overlap + ((DM_Plex*)dm->data)->overlap;
1818f5bf2dbfSMichael Lange   /* Build the new point SF */
18191627f6ccSMichael Lange   ierr = DMPlexCreatePointSF(*dmOverlap, sfOverlap, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
1820f5bf2dbfSMichael Lange   ierr = DMSetPointSF(*dmOverlap, sfPoint);CHKERRQ(ierr);
1821cf86098cSMatthew G. Knepley   ierr = DMGetCoordinateDM(*dmOverlap, &dmCoord);CHKERRQ(ierr);
1822cf86098cSMatthew G. Knepley   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
1823f5bf2dbfSMichael Lange   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1824a157612eSMichael Lange   /* Cleanup overlap partition */
1825a9f1d5b2SMichael Lange   ierr = DMLabelDestroy(&lblOverlap);CHKERRQ(ierr);
1826a9f1d5b2SMichael Lange   if (sf) *sf = sfOverlap;
1827a9f1d5b2SMichael Lange   else    {ierr = PetscSFDestroy(&sfOverlap);CHKERRQ(ierr);}
18281b858b30SMichael Lange   ierr = PetscLogEventEnd(DMPLEX_DistributeOverlap, dm, 0, 0, 0);CHKERRQ(ierr);
1829a157612eSMichael Lange   PetscFunctionReturn(0);
1830a157612eSMichael Lange }
18316462276dSToby Isaac 
1832cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap_Plex(DM dm, PetscInt *overlap)
1833cb54e036SVaclav Hapla {
1834cb54e036SVaclav Hapla   DM_Plex        *mesh  = (DM_Plex*) dm->data;
1835cb54e036SVaclav Hapla 
1836cb54e036SVaclav Hapla   PetscFunctionBegin;
1837cb54e036SVaclav Hapla   *overlap = mesh->overlap;
1838cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1839cb54e036SVaclav Hapla }
1840cb54e036SVaclav Hapla 
1841cb54e036SVaclav Hapla /*@
1842cb54e036SVaclav Hapla   DMPlexGetOverlap - Get the DMPlex partition overlap.
1843cb54e036SVaclav Hapla 
1844cb54e036SVaclav Hapla   Not collective
1845cb54e036SVaclav Hapla 
1846cb54e036SVaclav Hapla   Input Parameter:
1847cb54e036SVaclav Hapla . dm - The DM
1848cb54e036SVaclav Hapla 
1849064ec1f3Sprj-   Output Parameter:
1850cb54e036SVaclav Hapla . overlap - The overlap of this DM
1851cb54e036SVaclav Hapla 
1852cb54e036SVaclav Hapla   Level: intermediate
1853cb54e036SVaclav Hapla 
1854cb54e036SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexDistributeOverlap(), DMPlexCreateOverlapLabel()
1855cb54e036SVaclav Hapla @*/
1856cb54e036SVaclav Hapla PetscErrorCode DMPlexGetOverlap(DM dm, PetscInt *overlap)
1857cb54e036SVaclav Hapla {
1858cb54e036SVaclav Hapla   PetscErrorCode     ierr;
1859cb54e036SVaclav Hapla 
1860cb54e036SVaclav Hapla   PetscFunctionBegin;
1861cb54e036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1862cb54e036SVaclav Hapla   ierr = PetscUseMethod(dm,"DMPlexGetOverlap_C",(DM,PetscInt*),(dm,overlap));CHKERRQ(ierr);
1863cb54e036SVaclav Hapla   PetscFunctionReturn(0);
1864cb54e036SVaclav Hapla }
1865cb54e036SVaclav Hapla 
1866cb54e036SVaclav Hapla 
18676462276dSToby Isaac /*@C
18686462276dSToby Isaac   DMPlexGetGatherDM - Get a copy of the DMPlex that gathers all points on the
18696462276dSToby Isaac   root process of the original's communicator.
18706462276dSToby Isaac 
1871d083f849SBarry Smith   Collective on dm
187283655b49SVáclav Hapla 
1873064ec1f3Sprj-   Input Parameter:
18746462276dSToby Isaac . dm - the original DMPlex object
18756462276dSToby Isaac 
18766462276dSToby Isaac   Output Parameters:
1877a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1878a13df41bSStefano Zampini - gatherMesh - the gathered DM object, or NULL
18796462276dSToby Isaac 
18806462276dSToby Isaac   Level: intermediate
18816462276dSToby Isaac 
18826462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetRedundantDM()
18836462276dSToby Isaac @*/
1884a13df41bSStefano Zampini PetscErrorCode DMPlexGetGatherDM(DM dm, PetscSF *sf, DM *gatherMesh)
18856462276dSToby Isaac {
18866462276dSToby Isaac   MPI_Comm       comm;
18876462276dSToby Isaac   PetscMPIInt    size;
18886462276dSToby Isaac   PetscPartitioner oldPart, gatherPart;
18896462276dSToby Isaac   PetscErrorCode ierr;
18906462276dSToby Isaac 
18916462276dSToby Isaac   PetscFunctionBegin;
18926462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
18930c86c063SLisandro Dalcin   PetscValidPointer(gatherMesh,2);
18940c86c063SLisandro Dalcin   *gatherMesh = NULL;
1895a13df41bSStefano Zampini   if (sf) *sf = NULL;
18966462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
1897*ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
18986462276dSToby Isaac   if (size == 1) PetscFunctionReturn(0);
18996462276dSToby Isaac   ierr = DMPlexGetPartitioner(dm,&oldPart);CHKERRQ(ierr);
19006462276dSToby Isaac   ierr = PetscObjectReference((PetscObject)oldPart);CHKERRQ(ierr);
19016462276dSToby Isaac   ierr = PetscPartitionerCreate(comm,&gatherPart);CHKERRQ(ierr);
19026462276dSToby Isaac   ierr = PetscPartitionerSetType(gatherPart,PETSCPARTITIONERGATHER);CHKERRQ(ierr);
19036462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,gatherPart);CHKERRQ(ierr);
1904a13df41bSStefano Zampini   ierr = DMPlexDistribute(dm,0,sf,gatherMesh);CHKERRQ(ierr);
1905a13df41bSStefano Zampini 
19066462276dSToby Isaac   ierr = DMPlexSetPartitioner(dm,oldPart);CHKERRQ(ierr);
19076462276dSToby Isaac   ierr = PetscPartitionerDestroy(&gatherPart);CHKERRQ(ierr);
19086462276dSToby Isaac   ierr = PetscPartitionerDestroy(&oldPart);CHKERRQ(ierr);
19096462276dSToby Isaac   PetscFunctionReturn(0);
19106462276dSToby Isaac }
19116462276dSToby Isaac 
19126462276dSToby Isaac /*@C
19136462276dSToby Isaac   DMPlexGetRedundantDM - Get a copy of the DMPlex that is completely copied on each process.
19146462276dSToby Isaac 
1915d083f849SBarry Smith   Collective on dm
191683655b49SVáclav Hapla 
1917064ec1f3Sprj-   Input Parameter:
19186462276dSToby Isaac . dm - the original DMPlex object
19196462276dSToby Isaac 
19206462276dSToby Isaac   Output Parameters:
1921a13df41bSStefano Zampini + sf - the PetscSF used for point distribution (optional)
1922a13df41bSStefano Zampini - redundantMesh - the redundant DM object, or NULL
19236462276dSToby Isaac 
19246462276dSToby Isaac   Level: intermediate
19256462276dSToby Isaac 
19266462276dSToby Isaac .seealso: DMPlexDistribute(), DMPlexGetGatherDM()
19276462276dSToby Isaac @*/
1928a13df41bSStefano Zampini PetscErrorCode DMPlexGetRedundantDM(DM dm, PetscSF *sf, DM *redundantMesh)
19296462276dSToby Isaac {
19306462276dSToby Isaac   MPI_Comm       comm;
19316462276dSToby Isaac   PetscMPIInt    size, rank;
19326462276dSToby Isaac   PetscInt       pStart, pEnd, p;
19336462276dSToby Isaac   PetscInt       numPoints = -1;
1934a13df41bSStefano Zampini   PetscSF        migrationSF, sfPoint, gatherSF;
19356462276dSToby Isaac   DM             gatherDM, dmCoord;
19366462276dSToby Isaac   PetscSFNode    *points;
19376462276dSToby Isaac   PetscErrorCode ierr;
19386462276dSToby Isaac 
19396462276dSToby Isaac   PetscFunctionBegin;
19406462276dSToby Isaac   PetscValidHeaderSpecific(dm,DM_CLASSID,1);
19410c86c063SLisandro Dalcin   PetscValidPointer(redundantMesh,2);
19420c86c063SLisandro Dalcin   *redundantMesh = NULL;
19436462276dSToby Isaac   comm = PetscObjectComm((PetscObject)dm);
1944*ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
194568dbc166SMatthew G. Knepley   if (size == 1) {
194668dbc166SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
194768dbc166SMatthew G. Knepley     *redundantMesh = dm;
1948a13df41bSStefano Zampini     if (sf) *sf = NULL;
194968dbc166SMatthew G. Knepley     PetscFunctionReturn(0);
195068dbc166SMatthew G. Knepley   }
1951a13df41bSStefano Zampini   ierr = DMPlexGetGatherDM(dm,&gatherSF,&gatherDM);CHKERRQ(ierr);
19526462276dSToby Isaac   if (!gatherDM) PetscFunctionReturn(0);
1953*ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr);
19546462276dSToby Isaac   ierr = DMPlexGetChart(gatherDM,&pStart,&pEnd);CHKERRQ(ierr);
19556462276dSToby Isaac   numPoints = pEnd - pStart;
1956*ffc4695bSBarry Smith   ierr = MPI_Bcast(&numPoints,1,MPIU_INT,0,comm);CHKERRMPI(ierr);
19576462276dSToby Isaac   ierr = PetscMalloc1(numPoints,&points);CHKERRQ(ierr);
19586462276dSToby Isaac   ierr = PetscSFCreate(comm,&migrationSF);CHKERRQ(ierr);
19596462276dSToby Isaac   for (p = 0; p < numPoints; p++) {
19606462276dSToby Isaac     points[p].index = p;
19616462276dSToby Isaac     points[p].rank  = 0;
19626462276dSToby Isaac   }
19636462276dSToby Isaac   ierr = PetscSFSetGraph(migrationSF,pEnd-pStart,numPoints,NULL,PETSC_OWN_POINTER,points,PETSC_OWN_POINTER);CHKERRQ(ierr);
19646462276dSToby Isaac   ierr = DMPlexCreate(comm, redundantMesh);CHKERRQ(ierr);
19656462276dSToby Isaac   ierr = PetscObjectSetName((PetscObject) *redundantMesh, "Redundant Mesh");CHKERRQ(ierr);
19666462276dSToby Isaac   ierr = DMPlexMigrate(gatherDM, migrationSF, *redundantMesh);CHKERRQ(ierr);
19676462276dSToby Isaac   ierr = DMPlexCreatePointSF(*redundantMesh, migrationSF, PETSC_FALSE, &sfPoint);CHKERRQ(ierr);
19686462276dSToby Isaac   ierr = DMSetPointSF(*redundantMesh, sfPoint);CHKERRQ(ierr);
19696462276dSToby Isaac   ierr = DMGetCoordinateDM(*redundantMesh, &dmCoord);CHKERRQ(ierr);
19706462276dSToby Isaac   if (dmCoord) {ierr = DMSetPointSF(dmCoord, sfPoint);CHKERRQ(ierr);}
19716462276dSToby Isaac   ierr = PetscSFDestroy(&sfPoint);CHKERRQ(ierr);
1972a13df41bSStefano Zampini   if (sf) {
1973a13df41bSStefano Zampini     PetscSF tsf;
1974a13df41bSStefano Zampini 
1975a13df41bSStefano Zampini     ierr = PetscSFCompose(gatherSF,migrationSF,&tsf);CHKERRQ(ierr);
1976a13df41bSStefano Zampini     ierr = DMPlexStratifyMigrationSF(dm, tsf, sf);CHKERRQ(ierr);
1977a13df41bSStefano Zampini     ierr = PetscSFDestroy(&tsf);CHKERRQ(ierr);
1978a13df41bSStefano Zampini   }
19796462276dSToby Isaac   ierr = PetscSFDestroy(&migrationSF);CHKERRQ(ierr);
1980a13df41bSStefano Zampini   ierr = PetscSFDestroy(&gatherSF);CHKERRQ(ierr);
19816462276dSToby Isaac   ierr = DMDestroy(&gatherDM);CHKERRQ(ierr);
19826462276dSToby Isaac   PetscFunctionReturn(0);
19836462276dSToby Isaac }
19845fa78c88SVaclav Hapla 
19855fa78c88SVaclav Hapla /*@
19865fa78c88SVaclav Hapla   DMPlexIsDistributed - Find out whether this DM is distributed, i.e. more than one rank owns some points.
19875fa78c88SVaclav Hapla 
19885fa78c88SVaclav Hapla   Collective
19895fa78c88SVaclav Hapla 
19905fa78c88SVaclav Hapla   Input Parameter:
19915fa78c88SVaclav Hapla . dm      - The DM object
19925fa78c88SVaclav Hapla 
19935fa78c88SVaclav Hapla   Output Parameter:
19945fa78c88SVaclav Hapla . distributed - Flag whether the DM is distributed
19955fa78c88SVaclav Hapla 
19965fa78c88SVaclav Hapla   Level: intermediate
19975fa78c88SVaclav Hapla 
19985fa78c88SVaclav Hapla   Notes:
19995fa78c88SVaclav Hapla   This currently finds out whether at least two ranks have any DAG points.
20005fa78c88SVaclav Hapla   This involves MPI_Allreduce() with one integer.
20015fa78c88SVaclav Hapla   The result is currently not stashed so every call to this routine involves this global communication.
20025fa78c88SVaclav Hapla 
20035fa78c88SVaclav Hapla .seealso: DMPlexDistribute(), DMPlexGetOverlap(), DMPlexIsInterpolated()
20045fa78c88SVaclav Hapla @*/
20055fa78c88SVaclav Hapla PetscErrorCode DMPlexIsDistributed(DM dm, PetscBool *distributed)
20065fa78c88SVaclav Hapla {
20075fa78c88SVaclav Hapla   PetscInt          pStart, pEnd, count;
20085fa78c88SVaclav Hapla   MPI_Comm          comm;
20095fa78c88SVaclav Hapla   PetscErrorCode    ierr;
20105fa78c88SVaclav Hapla 
20115fa78c88SVaclav Hapla   PetscFunctionBegin;
20125fa78c88SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20135fa78c88SVaclav Hapla   PetscValidPointer(distributed,2);
20145fa78c88SVaclav Hapla   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
20155fa78c88SVaclav Hapla   ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
20165fa78c88SVaclav Hapla   count = !!(pEnd - pStart);
2017*ffc4695bSBarry Smith   ierr = MPI_Allreduce(MPI_IN_PLACE, &count, 1, MPIU_INT, MPI_SUM, comm);CHKERRMPI(ierr);
20185fa78c88SVaclav Hapla   *distributed = count > 1 ? PETSC_TRUE : PETSC_FALSE;
20195fa78c88SVaclav Hapla   PetscFunctionReturn(0);
20205fa78c88SVaclav Hapla }
2021