xref: /petsc/src/dm/impls/plex/plexfem.c (revision 1731464803f74807376d59d948f6bd89821c6faa)
1*17314648SMatthew G. Knepley #include "petscdm.h"
2*17314648SMatthew G. Knepley #include "petscerror.h"
3af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I      "petscdmplex.h"   I*/
4da97024aSMatthew G. Knepley #include <petscsf.h>
5cb1e1211SMatthew G Knepley 
68e3a2eefSMatthew G. Knepley #include <petscblaslapack.h>
7e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h>
8af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
9af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
10a0845e3aSMatthew G. Knepley 
115f0b18bfSMatthew G. Knepley PetscBool  Clementcite       = PETSC_FALSE;
125f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n"
135f0b18bfSMatthew G. Knepley                                "  title   = {Approximation by finite element functions using local regularization},\n"
145f0b18bfSMatthew G. Knepley                                "  author  = {Philippe Cl{\\'e}ment},\n"
155f0b18bfSMatthew G. Knepley                                "  journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n"
165f0b18bfSMatthew G. Knepley                                "  volume  = {9},\n"
175f0b18bfSMatthew G. Knepley                                "  number  = {R2},\n"
185f0b18bfSMatthew G. Knepley                                "  pages   = {77--84},\n"
195f0b18bfSMatthew G. Knepley                                "  year    = {1975}\n}\n";
205f0b18bfSMatthew G. Knepley 
21d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy)
22d71ae5a4SJacob Faibussowitsch {
232f856554SMatthew G. Knepley   PetscBool isPlex;
242f856554SMatthew G. Knepley 
252f856554SMatthew G. Knepley   PetscFunctionBegin;
269566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
272f856554SMatthew G. Knepley   if (isPlex) {
282f856554SMatthew G. Knepley     *plex = dm;
299566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
302f856554SMatthew G. Knepley   } else {
319566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
322f856554SMatthew G. Knepley     if (!*plex) {
339566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
349566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
35cbf8eb3cSStefano Zampini     } else {
36cbf8eb3cSStefano Zampini       PetscCall(PetscObjectReference((PetscObject)*plex));
37cbf8eb3cSStefano Zampini     }
382f856554SMatthew G. Knepley     if (copy) {
392f856554SMatthew G. Knepley       DMSubDomainHookLink link;
409a2a23afSMatthew G. Knepley 
41bb4b53efSMatthew G. Knepley       PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, *plex));
429566063dSJacob Faibussowitsch       PetscCall(DMCopyAuxiliaryVec(dm, *plex));
439a2a23afSMatthew G. Knepley       /* Run the subdomain hook (this will copy the DMSNES/DMTS) */
442f856554SMatthew G. Knepley       for (link = dm->subdomainhook; link; link = link->next) {
459566063dSJacob Faibussowitsch         if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx));
462f856554SMatthew G. Knepley       }
472f856554SMatthew G. Knepley     }
482f856554SMatthew G. Knepley   }
493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
502f856554SMatthew G. Knepley }
512f856554SMatthew G. Knepley 
5249abdd8aSBarry Smith static PetscErrorCode PetscContainerCtxDestroy_PetscFEGeom(void **ctx)
53d71ae5a4SJacob Faibussowitsch {
5449abdd8aSBarry Smith   PetscFEGeom *geom = (PetscFEGeom *)*ctx;
559b6f715bSMatthew G. Knepley 
569b6f715bSMatthew G. Knepley   PetscFunctionBegin;
579566063dSJacob Faibussowitsch   PetscCall(PetscFEGeomDestroy(&geom));
583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
599b6f715bSMatthew G. Knepley }
609b6f715bSMatthew G. Knepley 
61d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
62d71ae5a4SJacob Faibussowitsch {
639b6f715bSMatthew G. Knepley   char           composeStr[33] = {0};
649b6f715bSMatthew G. Knepley   PetscObjectId  id;
659b6f715bSMatthew G. Knepley   PetscContainer container;
669b6f715bSMatthew G. Knepley 
679b6f715bSMatthew G. Knepley   PetscFunctionBegin;
689566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
6963a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id));
709566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
719b6f715bSMatthew G. Knepley   if (container) {
729566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
739b6f715bSMatthew G. Knepley   } else {
749566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
759566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
769566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
7749abdd8aSBarry Smith     PetscCall(PetscContainerSetCtxDestroy(container, PetscContainerCtxDestroy_PetscFEGeom));
789566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
799566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
809b6f715bSMatthew G. Knepley   }
813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
829b6f715bSMatthew G. Knepley }
839b6f715bSMatthew G. Knepley 
84d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
85d71ae5a4SJacob Faibussowitsch {
869b6f715bSMatthew G. Knepley   PetscFunctionBegin;
879b6f715bSMatthew G. Knepley   *geom = NULL;
883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
899b6f715bSMatthew G. Knepley }
909b6f715bSMatthew G. Knepley 
9146fa42a0SMatthew G. Knepley /*@
9246fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
9346fa42a0SMatthew G. Knepley 
9420f4b53cSBarry Smith   Not Collective
9546fa42a0SMatthew G. Knepley 
964165533cSJose E. Roman   Input Parameters:
97a1cb98faSBarry Smith + dm   - the `DM`
9846fa42a0SMatthew G. Knepley - unit - The SI unit
9946fa42a0SMatthew G. Knepley 
1004165533cSJose E. Roman   Output Parameter:
10146fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
10246fa42a0SMatthew G. Knepley 
10346fa42a0SMatthew G. Knepley   Level: advanced
10446fa42a0SMatthew G. Knepley 
1051cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit`
10646fa42a0SMatthew G. Knepley @*/
107d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
108d71ae5a4SJacob Faibussowitsch {
109cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
110cb1e1211SMatthew G Knepley 
111cb1e1211SMatthew G Knepley   PetscFunctionBegin;
112cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1134f572ea9SToby Isaac   PetscAssertPointer(scale, 3);
114cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
1153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
116cb1e1211SMatthew G Knepley }
117cb1e1211SMatthew G Knepley 
11846fa42a0SMatthew G. Knepley /*@
11946fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
12046fa42a0SMatthew G. Knepley 
12120f4b53cSBarry Smith   Not Collective
12246fa42a0SMatthew G. Knepley 
1234165533cSJose E. Roman   Input Parameters:
124a1cb98faSBarry Smith + dm    - the `DM`
12546fa42a0SMatthew G. Knepley . unit  - The SI unit
12646fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
12746fa42a0SMatthew G. Knepley 
12846fa42a0SMatthew G. Knepley   Level: advanced
12946fa42a0SMatthew G. Knepley 
1301cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit`
13146fa42a0SMatthew G. Knepley @*/
132d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
133d71ae5a4SJacob Faibussowitsch {
134cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
135cb1e1211SMatthew G Knepley 
136cb1e1211SMatthew G Knepley   PetscFunctionBegin;
137cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
138cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
1393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
140cb1e1211SMatthew G Knepley }
141cb1e1211SMatthew G Knepley 
142d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed_Plex(DM dm, PetscBool *useCeed)
143d2b2dc1eSMatthew G. Knepley {
144d2b2dc1eSMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
145d2b2dc1eSMatthew G. Knepley 
146d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
147d2b2dc1eSMatthew G. Knepley   *useCeed = mesh->useCeed;
148d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
149d2b2dc1eSMatthew G. Knepley }
150d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed_Plex(DM dm, PetscBool useCeed)
151d2b2dc1eSMatthew G. Knepley {
152d2b2dc1eSMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
153d2b2dc1eSMatthew G. Knepley 
154d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
155d2b2dc1eSMatthew G. Knepley   mesh->useCeed = useCeed;
156d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
157d2b2dc1eSMatthew G. Knepley }
158d2b2dc1eSMatthew G. Knepley 
159d2b2dc1eSMatthew G. Knepley /*@
160d2b2dc1eSMatthew G. Knepley   DMPlexGetUseCeed - Get flag for using the LibCEED backend
161d2b2dc1eSMatthew G. Knepley 
162d2b2dc1eSMatthew G. Knepley   Not collective
163d2b2dc1eSMatthew G. Knepley 
164d2b2dc1eSMatthew G. Knepley   Input Parameter:
165d2b2dc1eSMatthew G. Knepley . dm - The `DM`
166d2b2dc1eSMatthew G. Knepley 
167d2b2dc1eSMatthew G. Knepley   Output Parameter:
168d2b2dc1eSMatthew G. Knepley . useCeed - The flag
169d2b2dc1eSMatthew G. Knepley 
170d2b2dc1eSMatthew G. Knepley   Level: intermediate
171d2b2dc1eSMatthew G. Knepley 
172d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetUseCeed()`
173d2b2dc1eSMatthew G. Knepley @*/
174d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed(DM dm, PetscBool *useCeed)
175d2b2dc1eSMatthew G. Knepley {
176d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
177d2b2dc1eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
178d2b2dc1eSMatthew G. Knepley   PetscAssertPointer(useCeed, 2);
179d2b2dc1eSMatthew G. Knepley   *useCeed = PETSC_FALSE;
180d2b2dc1eSMatthew G. Knepley   PetscTryMethod(dm, "DMPlexGetUseCeed_C", (DM, PetscBool *), (dm, useCeed));
181d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
182d2b2dc1eSMatthew G. Knepley }
183d2b2dc1eSMatthew G. Knepley 
184d2b2dc1eSMatthew G. Knepley /*@
185d2b2dc1eSMatthew G. Knepley   DMPlexSetUseCeed - Set flag for using the LibCEED backend
186d2b2dc1eSMatthew G. Knepley 
187d2b2dc1eSMatthew G. Knepley   Not collective
188d2b2dc1eSMatthew G. Knepley 
189d2b2dc1eSMatthew G. Knepley   Input Parameters:
190d2b2dc1eSMatthew G. Knepley + dm      - The `DM`
191d2b2dc1eSMatthew G. Knepley - useCeed - The flag
192d2b2dc1eSMatthew G. Knepley 
193d2b2dc1eSMatthew G. Knepley   Level: intermediate
194d2b2dc1eSMatthew G. Knepley 
195fe8e7dddSPierre Jolivet .seealso: `DMPlexGetUseCeed()`
196d2b2dc1eSMatthew G. Knepley @*/
197d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed(DM dm, PetscBool useCeed)
198d2b2dc1eSMatthew G. Knepley {
199d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
200d2b2dc1eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
201d2b2dc1eSMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, useCeed, 2);
202d2b2dc1eSMatthew G. Knepley   PetscUseMethod(dm, "DMPlexSetUseCeed_C", (DM, PetscBool), (dm, useCeed));
203d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
204d2b2dc1eSMatthew G. Knepley }
205d2b2dc1eSMatthew G. Knepley 
206e8e188d2SZach Atkins /*@
207e8e188d2SZach Atkins   DMPlexGetUseMatClosurePermutation - Get flag for using a closure permutation for matrix insertion
208e8e188d2SZach Atkins 
209e8e188d2SZach Atkins   Not collective
210e8e188d2SZach Atkins 
211e8e188d2SZach Atkins   Input Parameter:
212e8e188d2SZach Atkins . dm - The `DM`
213e8e188d2SZach Atkins 
214e8e188d2SZach Atkins   Output Parameter:
215e8e188d2SZach Atkins . useClPerm - The flag
216e8e188d2SZach Atkins 
217e8e188d2SZach Atkins   Level: intermediate
218e8e188d2SZach Atkins 
219e8e188d2SZach Atkins .seealso: `DMPlexSetUseMatClosurePermutation()`
220e8e188d2SZach Atkins @*/
221e8e188d2SZach Atkins PetscErrorCode DMPlexGetUseMatClosurePermutation(DM dm, PetscBool *useClPerm)
222e8e188d2SZach Atkins {
223e8e188d2SZach Atkins   DM_Plex *mesh = (DM_Plex *)dm->data;
224e8e188d2SZach Atkins 
225e8e188d2SZach Atkins   PetscFunctionBegin;
226e8e188d2SZach Atkins   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
227e8e188d2SZach Atkins   PetscAssertPointer(useClPerm, 2);
228e8e188d2SZach Atkins   *useClPerm = mesh->useMatClPerm;
229e8e188d2SZach Atkins   PetscFunctionReturn(PETSC_SUCCESS);
230e8e188d2SZach Atkins }
231e8e188d2SZach Atkins 
232e8e188d2SZach Atkins /*@
233e8e188d2SZach Atkins   DMPlexSetUseMatClosurePermutation - Set flag for using a closure permutation for matrix insertion
234e8e188d2SZach Atkins 
235e8e188d2SZach Atkins   Not collective
236e8e188d2SZach Atkins 
237e8e188d2SZach Atkins   Input Parameters:
238e8e188d2SZach Atkins + dm        - The `DM`
239e8e188d2SZach Atkins - useClPerm - The flag
240e8e188d2SZach Atkins 
241e8e188d2SZach Atkins   Level: intermediate
242e8e188d2SZach Atkins 
243e8e188d2SZach Atkins .seealso: `DMPlexGetUseMatClosurePermutation()`
244e8e188d2SZach Atkins @*/
245e8e188d2SZach Atkins PetscErrorCode DMPlexSetUseMatClosurePermutation(DM dm, PetscBool useClPerm)
246e8e188d2SZach Atkins {
247e8e188d2SZach Atkins   DM_Plex *mesh = (DM_Plex *)dm->data;
248e8e188d2SZach Atkins 
249e8e188d2SZach Atkins   PetscFunctionBegin;
250e8e188d2SZach Atkins   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
251e8e188d2SZach Atkins   PetscValidLogicalCollectiveBool(dm, useClPerm, 2);
252e8e188d2SZach Atkins   mesh->useMatClPerm = useClPerm;
253e8e188d2SZach Atkins   PetscFunctionReturn(PETSC_SUCCESS);
254e8e188d2SZach Atkins }
255e8e188d2SZach Atkins 
256d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx)
257d71ae5a4SJacob Faibussowitsch {
2589371c9d4SSatish Balay   const PetscInt eps[3][3][3] = {
2599371c9d4SSatish Balay     {{0, 0, 0},  {0, 0, 1},  {0, -1, 0}},
2609371c9d4SSatish Balay     {{0, 0, -1}, {0, 0, 0},  {1, 0, 0} },
2619371c9d4SSatish Balay     {{0, 1, 0},  {-1, 0, 0}, {0, 0, 0} }
2629371c9d4SSatish Balay   };
263026175e5SToby Isaac   PetscInt *ctxInt = (PetscInt *)ctx;
264ad917190SMatthew G. Knepley   PetscInt  dim2   = ctxInt[0];
265026175e5SToby Isaac   PetscInt  d      = ctxInt[1];
266026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
267026175e5SToby Isaac 
268ad917190SMatthew G. Knepley   PetscFunctionBegin;
26963a3b9bcSJacob Faibussowitsch   PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2);
270026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
271026175e5SToby Isaac   if (d < dim) {
27212adca46SMatthew G. Knepley     mode[d] = 1.; /* Translation along axis d */
273ad917190SMatthew G. Knepley   } else {
274026175e5SToby Isaac     for (i = 0; i < dim; i++) {
2759371c9d4SSatish Balay       for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ }
276026175e5SToby Isaac     }
277026175e5SToby Isaac   }
2783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
279026175e5SToby Isaac }
280026175e5SToby Isaac 
281cc4e42d9SMartin Diehl /*@
28212adca46SMatthew G. Knepley   DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation
283cb1e1211SMatthew G Knepley 
28420f4b53cSBarry Smith   Collective
285cb1e1211SMatthew G Knepley 
2864165533cSJose E. Roman   Input Parameters:
287a1cb98faSBarry Smith + dm    - the `DM`
28856cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default
289cb1e1211SMatthew G Knepley 
2904165533cSJose E. Roman   Output Parameter:
291cb1e1211SMatthew G Knepley . sp - the null space
292cb1e1211SMatthew G Knepley 
293cb1e1211SMatthew G Knepley   Level: advanced
294cb1e1211SMatthew G Knepley 
295a1cb98faSBarry Smith   Note:
296a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
297a1cb98faSBarry Smith 
2981cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG`
299cb1e1211SMatthew G Knepley @*/
300d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp)
301d71ae5a4SJacob Faibussowitsch {
30256cf3b9cSMatthew G. Knepley   PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *);
303cb1e1211SMatthew G Knepley   MPI_Comm     comm;
304026175e5SToby Isaac   Vec          mode[6];
305026175e5SToby Isaac   PetscSection section, globalSection;
30656cf3b9cSMatthew G. Knepley   PetscInt     dim, dimEmbed, Nf, n, m, mmin, d, i, j;
307db14aad5SMatthew G. Knepley   void       **ctxs;
308cb1e1211SMatthew G Knepley 
309cb1e1211SMatthew G Knepley   PetscFunctionBegin;
3109566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3119566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
3129566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
3139566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
31463a3b9bcSJacob Faibussowitsch   PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf);
31556cf3b9cSMatthew G. Knepley   if (dim == 1 && Nf < 2) {
3169566063dSJacob Faibussowitsch     PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp));
3173ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
318cb1e1211SMatthew G Knepley   }
3199566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
3209566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
3219566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
322db14aad5SMatthew G. Knepley   PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs));
323b247467aSMatthew G. Knepley   m = (dim * (dim + 1)) / 2;
3249566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
3259566063dSJacob Faibussowitsch   PetscCall(VecSetType(mode[0], dm->vectype));
3269566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
3279566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
3289566063dSJacob Faibussowitsch   PetscCall(VecGetSize(mode[0], &n));
329b247467aSMatthew G. Knepley   mmin        = PetscMin(m, n);
33056cf3b9cSMatthew G. Knepley   func[field] = DMPlexProjectRigidBody_Private;
3319566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
332026175e5SToby Isaac   for (d = 0; d < m; d++) {
333330485fdSToby Isaac     PetscInt ctx[2];
334cb1e1211SMatthew G Knepley 
335db14aad5SMatthew G. Knepley     ctxs[field] = (void *)(&ctx[0]);
3369d8fbdeaSMatthew G. Knepley     ctx[0]      = dimEmbed;
337330485fdSToby Isaac     ctx[1]      = d;
338db14aad5SMatthew G. Knepley     PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d]));
339cb1e1211SMatthew G Knepley   }
3403b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
341b50a2c0aSJacob Faibussowitsch   for (i = 0; i < mmin; ++i) {
342b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
343b50a2c0aSJacob Faibussowitsch 
3449566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
3459566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1));
346b50a2c0aSJacob Faibussowitsch     for (j = i + 1; j < mmin; ++j) {
347b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
3489566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
349b50a2c0aSJacob Faibussowitsch     }
350cb1e1211SMatthew G Knepley   }
3519566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp));
3529566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
353db14aad5SMatthew G. Knepley   PetscCall(PetscFree2(func, ctxs));
3543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
355cb1e1211SMatthew G Knepley }
356cb1e1211SMatthew G Knepley 
357cc4e42d9SMartin Diehl /*@
35812adca46SMatthew G. Knepley   DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation
35912adca46SMatthew G. Knepley 
36020f4b53cSBarry Smith   Collective
36112adca46SMatthew G. Knepley 
3624165533cSJose E. Roman   Input Parameters:
363a1cb98faSBarry Smith + dm    - the `DM`
36412adca46SMatthew G. Knepley . nb    - The number of bodies
365a1cb98faSBarry Smith . label - The `DMLabel` marking each domain
36612adca46SMatthew G. Knepley . nids  - The number of ids per body
36712adca46SMatthew G. Knepley - ids   - An array of the label ids in sequence for each domain
36812adca46SMatthew G. Knepley 
3694165533cSJose E. Roman   Output Parameter:
37012adca46SMatthew G. Knepley . sp - the null space
37112adca46SMatthew G. Knepley 
37212adca46SMatthew G. Knepley   Level: advanced
37312adca46SMatthew G. Knepley 
374a1cb98faSBarry Smith   Note:
375a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
376a1cb98faSBarry Smith 
3771cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`
37812adca46SMatthew G. Knepley @*/
379d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp)
380d71ae5a4SJacob Faibussowitsch {
38112adca46SMatthew G. Knepley   MPI_Comm     comm;
38212adca46SMatthew G. Knepley   PetscSection section, globalSection;
38312adca46SMatthew G. Knepley   Vec         *mode;
38412adca46SMatthew G. Knepley   PetscScalar *dots;
38512adca46SMatthew G. Knepley   PetscInt     dim, dimEmbed, n, m, b, d, i, j, off;
38612adca46SMatthew G. Knepley 
38712adca46SMatthew G. Knepley   PetscFunctionBegin;
3889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3899566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
3909566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
3919566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
3929566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
3939566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
39412adca46SMatthew G. Knepley   m = nb * (dim * (dim + 1)) / 2;
3959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &mode, m, &dots));
3969566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
3979566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
3989566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
3999566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
40012adca46SMatthew G. Knepley   for (b = 0, off = 0; b < nb; ++b) {
40112adca46SMatthew G. Knepley     for (d = 0; d < m / nb; ++d) {
40212adca46SMatthew G. Knepley       PetscInt ctx[2];
40312adca46SMatthew G. Knepley       PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
40412adca46SMatthew G. Knepley       void *voidctx                                                                                   = (void *)(&ctx[0]);
40512adca46SMatthew G. Knepley 
40612adca46SMatthew G. Knepley       ctx[0] = dimEmbed;
40712adca46SMatthew G. Knepley       ctx[1] = d;
4089566063dSJacob Faibussowitsch       PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]));
40912adca46SMatthew G. Knepley       off += nids[b];
41012adca46SMatthew G. Knepley     }
41112adca46SMatthew G. Knepley   }
4123b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
413606c1a1cSJacob Faibussowitsch   for (i = 0; i < m; ++i) {
414b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
4155a0e29b9SJacob Faibussowitsch 
4169566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
4179566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1));
4185a0e29b9SJacob Faibussowitsch     for (j = i + 1; j < m; ++j) {
419b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
4209566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
4215a0e29b9SJacob Faibussowitsch     }
42212adca46SMatthew G. Knepley   }
4239566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp));
4249566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
4259566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mode, dots));
4263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42712adca46SMatthew G. Knepley }
42812adca46SMatthew G. Knepley 
429b29cfa1cSToby Isaac /*@
430b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
431b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
432a4e35b19SJacob Faibussowitsch   evaluating the dual space basis of that point.
433b29cfa1cSToby Isaac 
434b29cfa1cSToby Isaac   Input Parameters:
435a1cb98faSBarry Smith + dm     - the `DMPLEX` object
436b29cfa1cSToby Isaac - height - the maximum projection height >= 0
437b29cfa1cSToby Isaac 
438b29cfa1cSToby Isaac   Level: advanced
439b29cfa1cSToby Isaac 
440a4e35b19SJacob Faibussowitsch   Notes:
441a4e35b19SJacob Faibussowitsch   A basis function is associated with the point in its transitively-closed support whose mesh
442a4e35b19SJacob Faibussowitsch   height is highest (w.r.t. DAG height), but not greater than the maximum projection height,
443a4e35b19SJacob Faibussowitsch   which is set with this function.  By default, the maximum projection height is zero, which
444a4e35b19SJacob Faibussowitsch   means that only mesh cells are used to project basis functions.  A height of one, for
445a4e35b19SJacob Faibussowitsch   example, evaluates a cell-interior basis functions using its cells dual space basis, but all
446a4e35b19SJacob Faibussowitsch   other basis functions with the dual space basis of a face.
447a4e35b19SJacob Faibussowitsch 
4481cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
449b29cfa1cSToby Isaac @*/
450d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
451d71ae5a4SJacob Faibussowitsch {
452b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
453b29cfa1cSToby Isaac 
454b29cfa1cSToby Isaac   PetscFunctionBegin;
455b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
456b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
4573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
458b29cfa1cSToby Isaac }
459b29cfa1cSToby Isaac 
460b29cfa1cSToby Isaac /*@
461b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
462b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
463b29cfa1cSToby Isaac 
4642fe279fdSBarry Smith   Input Parameter:
465a1cb98faSBarry Smith . dm - the `DMPLEX` object
466b29cfa1cSToby Isaac 
4672fe279fdSBarry Smith   Output Parameter:
468b29cfa1cSToby Isaac . height - the maximum projection height
469b29cfa1cSToby Isaac 
470b29cfa1cSToby Isaac   Level: intermediate
471b29cfa1cSToby Isaac 
4721cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
473b29cfa1cSToby Isaac @*/
474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
475d71ae5a4SJacob Faibussowitsch {
476b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
477b29cfa1cSToby Isaac 
478b29cfa1cSToby Isaac   PetscFunctionBegin;
479b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
480b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
4813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
482b29cfa1cSToby Isaac }
483b29cfa1cSToby Isaac 
484ca3d3a14SMatthew G. Knepley typedef struct {
485ca3d3a14SMatthew G. Knepley   PetscReal    alpha; /* The first Euler angle, and in 2D the only one */
486ca3d3a14SMatthew G. Knepley   PetscReal    beta;  /* The second Euler angle */
487ca3d3a14SMatthew G. Knepley   PetscReal    gamma; /* The third Euler angle */
488ca3d3a14SMatthew G. Knepley   PetscInt     dim;   /* The dimension of R */
489ca3d3a14SMatthew G. Knepley   PetscScalar *R;     /* The rotation matrix, transforming a vector in the local basis to the global basis */
490ca3d3a14SMatthew G. Knepley   PetscScalar *RT;    /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */
491ca3d3a14SMatthew G. Knepley } RotCtx;
492ca3d3a14SMatthew G. Knepley 
493ca3d3a14SMatthew G. Knepley /*
494ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
495ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
496ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
497ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
498ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
499ca3d3a14SMatthew G. Knepley */
500d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx)
501d71ae5a4SJacob Faibussowitsch {
502ca3d3a14SMatthew G. Knepley   RotCtx   *rc  = (RotCtx *)ctx;
503ca3d3a14SMatthew G. Knepley   PetscInt  dim = rc->dim;
504ca3d3a14SMatthew G. Knepley   PetscReal c1, s1, c2, s2, c3, s3;
505ca3d3a14SMatthew G. Knepley 
506ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT));
508ca3d3a14SMatthew G. Knepley   switch (dim) {
509ca3d3a14SMatthew G. Knepley   case 2:
5109371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
5119371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
5129371c9d4SSatish Balay     rc->R[0] = c1;
5139371c9d4SSatish Balay     rc->R[1] = s1;
5149371c9d4SSatish Balay     rc->R[2] = -s1;
5159371c9d4SSatish Balay     rc->R[3] = c1;
5169566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
517b458e8f1SJose E. Roman     DMPlex_Transpose2D_Internal(rc->RT);
518ca3d3a14SMatthew G. Knepley     break;
519ca3d3a14SMatthew G. Knepley   case 3:
5209371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
5219371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
5229371c9d4SSatish Balay     c2       = PetscCosReal(rc->beta);
5239371c9d4SSatish Balay     s2       = PetscSinReal(rc->beta);
5249371c9d4SSatish Balay     c3       = PetscCosReal(rc->gamma);
5259371c9d4SSatish Balay     s3       = PetscSinReal(rc->gamma);
5269371c9d4SSatish Balay     rc->R[0] = c1 * c3 - c2 * s1 * s3;
5279371c9d4SSatish Balay     rc->R[1] = c3 * s1 + c1 * c2 * s3;
5289371c9d4SSatish Balay     rc->R[2] = s2 * s3;
5299371c9d4SSatish Balay     rc->R[3] = -c1 * s3 - c2 * c3 * s1;
5309371c9d4SSatish Balay     rc->R[4] = c1 * c2 * c3 - s1 * s3;
5319371c9d4SSatish Balay     rc->R[5] = c3 * s2;
5329371c9d4SSatish Balay     rc->R[6] = s1 * s2;
5339371c9d4SSatish Balay     rc->R[7] = -c1 * s2;
5349371c9d4SSatish Balay     rc->R[8] = c2;
5359566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
536b458e8f1SJose E. Roman     DMPlex_Transpose3D_Internal(rc->RT);
537ca3d3a14SMatthew G. Knepley     break;
538d71ae5a4SJacob Faibussowitsch   default:
539d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim);
540ca3d3a14SMatthew G. Knepley   }
5413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
542ca3d3a14SMatthew G. Knepley }
543ca3d3a14SMatthew G. Knepley 
544d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx)
545d71ae5a4SJacob Faibussowitsch {
546ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
547ca3d3a14SMatthew G. Knepley 
548ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5499566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rc->R, rc->RT));
5509566063dSJacob Faibussowitsch   PetscCall(PetscFree(rc));
5513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
552ca3d3a14SMatthew G. Knepley }
553ca3d3a14SMatthew G. Knepley 
554d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx)
555d71ae5a4SJacob Faibussowitsch {
556ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
557ca3d3a14SMatthew G. Knepley 
558ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5594f572ea9SToby Isaac   PetscAssertPointer(ctx, 5);
5609371c9d4SSatish Balay   if (l2g) {
5619371c9d4SSatish Balay     *A = rc->R;
5629371c9d4SSatish Balay   } else {
5639371c9d4SSatish Balay     *A = rc->RT;
5649371c9d4SSatish Balay   }
5653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
566ca3d3a14SMatthew G. Knepley }
567ca3d3a14SMatthew G. Knepley 
568d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
569d71ae5a4SJacob Faibussowitsch {
570ec277c0fSMatthew G. Knepley   PetscFunctionBegin;
571ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX)
572ab6a9622SMatthew G. Knepley   switch (dim) {
5739371c9d4SSatish Balay   case 2: {
57427104ee2SJacob Faibussowitsch     PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0};
575ab6a9622SMatthew G. Knepley 
5769566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
5779371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
5789371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
5799371c9d4SSatish Balay   } break;
5809371c9d4SSatish Balay   case 3: {
58127104ee2SJacob Faibussowitsch     PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0};
582ab6a9622SMatthew G. Knepley 
5839566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
5849371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
5859371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
5869371c9d4SSatish Balay     z[2] = PetscRealPart(zt[2]);
5879371c9d4SSatish Balay   } break;
588ab6a9622SMatthew G. Knepley   }
589ab6a9622SMatthew G. Knepley #else
5909566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx));
591ab6a9622SMatthew G. Knepley #endif
5923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
593ab6a9622SMatthew G. Knepley }
594ab6a9622SMatthew G. Knepley 
595d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx)
596d71ae5a4SJacob Faibussowitsch {
597ca3d3a14SMatthew G. Knepley   const PetscScalar *A;
598ca3d3a14SMatthew G. Knepley 
599ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6009566063dSJacob Faibussowitsch   PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx));
601ca3d3a14SMatthew G. Knepley   switch (dim) {
602d71ae5a4SJacob Faibussowitsch   case 2:
603d71ae5a4SJacob Faibussowitsch     DMPlex_Mult2D_Internal(A, 1, y, z);
604d71ae5a4SJacob Faibussowitsch     break;
605d71ae5a4SJacob Faibussowitsch   case 3:
606d71ae5a4SJacob Faibussowitsch     DMPlex_Mult3D_Internal(A, 1, y, z);
607d71ae5a4SJacob Faibussowitsch     break;
608ca3d3a14SMatthew G. Knepley   }
6093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
610ca3d3a14SMatthew G. Knepley }
611ca3d3a14SMatthew G. Knepley 
612d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a)
613d71ae5a4SJacob Faibussowitsch {
614ca3d3a14SMatthew G. Knepley   PetscSection       ts;
615ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tva;
616ca3d3a14SMatthew G. Knepley   PetscInt           dof;
617ca3d3a14SMatthew G. Knepley 
618ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6199566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6209566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
6219566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
6229566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva));
623ca3d3a14SMatthew G. Knepley   if (l2g) {
624ca3d3a14SMatthew G. Knepley     switch (dof) {
625d71ae5a4SJacob Faibussowitsch     case 4:
626d71ae5a4SJacob Faibussowitsch       DMPlex_Mult2D_Internal(tva, 1, a, a);
627d71ae5a4SJacob Faibussowitsch       break;
628d71ae5a4SJacob Faibussowitsch     case 9:
629d71ae5a4SJacob Faibussowitsch       DMPlex_Mult3D_Internal(tva, 1, a, a);
630d71ae5a4SJacob Faibussowitsch       break;
631ca3d3a14SMatthew G. Knepley     }
632ca3d3a14SMatthew G. Knepley   } else {
633ca3d3a14SMatthew G. Knepley     switch (dof) {
634d71ae5a4SJacob Faibussowitsch     case 4:
635d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose2D_Internal(tva, 1, a, a);
636d71ae5a4SJacob Faibussowitsch       break;
637d71ae5a4SJacob Faibussowitsch     case 9:
638d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose3D_Internal(tva, 1, a, a);
639d71ae5a4SJacob Faibussowitsch       break;
640ca3d3a14SMatthew G. Knepley     }
641ca3d3a14SMatthew G. Knepley   }
6429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
644ca3d3a14SMatthew G. Knepley }
645ca3d3a14SMatthew G. Knepley 
646d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a)
647d71ae5a4SJacob Faibussowitsch {
648ca3d3a14SMatthew G. Knepley   PetscSection       s, ts;
649ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tvaf, *tvag;
650ca3d3a14SMatthew G. Knepley   PetscInt           fdof, gdof, fpdof, gpdof;
651ca3d3a14SMatthew G. Knepley 
652ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6539566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6549566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6559566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof));
6569566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof));
6579566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof));
6589566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof));
6599566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
6609566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf));
6619566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag));
662ca3d3a14SMatthew G. Knepley   if (l2g) {
663ca3d3a14SMatthew G. Knepley     switch (fdof) {
664d71ae5a4SJacob Faibussowitsch     case 4:
665d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);
666d71ae5a4SJacob Faibussowitsch       break;
667d71ae5a4SJacob Faibussowitsch     case 9:
668d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);
669d71ae5a4SJacob Faibussowitsch       break;
670ca3d3a14SMatthew G. Knepley     }
671ca3d3a14SMatthew G. Knepley     switch (gdof) {
672d71ae5a4SJacob Faibussowitsch     case 4:
673d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);
674d71ae5a4SJacob Faibussowitsch       break;
675d71ae5a4SJacob Faibussowitsch     case 9:
676d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);
677d71ae5a4SJacob Faibussowitsch       break;
678ca3d3a14SMatthew G. Knepley     }
679ca3d3a14SMatthew G. Knepley   } else {
680ca3d3a14SMatthew G. Knepley     switch (fdof) {
681d71ae5a4SJacob Faibussowitsch     case 4:
682d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);
683d71ae5a4SJacob Faibussowitsch       break;
684d71ae5a4SJacob Faibussowitsch     case 9:
685d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);
686d71ae5a4SJacob Faibussowitsch       break;
687ca3d3a14SMatthew G. Knepley     }
688ca3d3a14SMatthew G. Knepley     switch (gdof) {
689d71ae5a4SJacob Faibussowitsch     case 4:
690d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);
691d71ae5a4SJacob Faibussowitsch       break;
692d71ae5a4SJacob Faibussowitsch     case 9:
693d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);
694d71ae5a4SJacob Faibussowitsch       break;
695ca3d3a14SMatthew G. Knepley     }
696ca3d3a14SMatthew G. Knepley   }
6979566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
699ca3d3a14SMatthew G. Knepley }
700ca3d3a14SMatthew G. Knepley 
701d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a)
702d71ae5a4SJacob Faibussowitsch {
703ca3d3a14SMatthew G. Knepley   PetscSection    s;
704ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
705ca3d3a14SMatthew G. Knepley   IS              clPoints;
706ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
707ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
708ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, Np, cp, dof, d = 0;
709ca3d3a14SMatthew G. Knepley 
710ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7119566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7129566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
71307218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
714ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
715ca3d3a14SMatthew G. Knepley     for (cp = 0; cp < Np * 2; cp += 2) {
7169566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof));
717ca3d3a14SMatthew G. Knepley       if (!dof) continue;
7189566063dSJacob Faibussowitsch       if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]));
719ca3d3a14SMatthew G. Knepley       d += dof;
720ca3d3a14SMatthew G. Knepley     }
721ca3d3a14SMatthew G. Knepley   }
7229566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
7233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
724ca3d3a14SMatthew G. Knepley }
725ca3d3a14SMatthew G. Knepley 
726d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a)
727d71ae5a4SJacob Faibussowitsch {
728ca3d3a14SMatthew G. Knepley   PetscSection    s;
729ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
730ca3d3a14SMatthew G. Knepley   IS              clPoints;
731ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
732ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
7338bdb3c71SMatthew G. Knepley   PetscInt        Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0;
734ca3d3a14SMatthew G. Knepley 
735ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7369566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7379566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
73807218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
739ca3d3a14SMatthew G. Knepley   for (f = 0, r = 0; f < Nf; ++f) {
740ca3d3a14SMatthew G. Knepley     for (cpf = 0; cpf < Np * 2; cpf += 2) {
7419566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof));
742ca3d3a14SMatthew G. Knepley       for (g = 0, c = 0; g < Nf; ++g) {
743ca3d3a14SMatthew G. Knepley         for (cpg = 0; cpg < Np * 2; cpg += 2) {
7449566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof));
7459566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c]));
746ca3d3a14SMatthew G. Knepley           c += gdof;
747ca3d3a14SMatthew G. Knepley         }
748ca3d3a14SMatthew G. Knepley       }
74963a3b9bcSJacob Faibussowitsch       PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
750ca3d3a14SMatthew G. Knepley       r += fdof;
751ca3d3a14SMatthew G. Knepley     }
752ca3d3a14SMatthew G. Knepley   }
75363a3b9bcSJacob Faibussowitsch   PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
7549566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
7553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
756ca3d3a14SMatthew G. Knepley }
757ca3d3a14SMatthew G. Knepley 
758d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g)
759d71ae5a4SJacob Faibussowitsch {
760ca3d3a14SMatthew G. Knepley   DM                 tdm;
761ca3d3a14SMatthew G. Knepley   Vec                tv;
762ca3d3a14SMatthew G. Knepley   PetscSection       ts, s;
763ca3d3a14SMatthew G. Knepley   const PetscScalar *ta;
764ca3d3a14SMatthew G. Knepley   PetscScalar       *a, *va;
765ca3d3a14SMatthew G. Knepley   PetscInt           pStart, pEnd, p, Nf, f;
766ca3d3a14SMatthew G. Knepley 
767ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7689566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
7699566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
7709566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
7719566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7729566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
7739566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
7749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lv, &a));
7759566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
776ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
777ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
7789566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va));
7799566063dSJacob Faibussowitsch       PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va));
780ca3d3a14SMatthew G. Knepley     }
781ca3d3a14SMatthew G. Knepley   }
7829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lv, &a));
7839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
7843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
785ca3d3a14SMatthew G. Knepley }
786ca3d3a14SMatthew G. Knepley 
787ca3d3a14SMatthew G. Knepley /*@
788ca3d3a14SMatthew G. Knepley   DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis
789ca3d3a14SMatthew G. Knepley 
790ca3d3a14SMatthew G. Knepley   Input Parameters:
791a1cb98faSBarry Smith + dm - The `DM`
792ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis
793ca3d3a14SMatthew G. Knepley 
7942fe279fdSBarry Smith   Output Parameter:
795ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis
796ca3d3a14SMatthew G. Knepley 
797ca3d3a14SMatthew G. Knepley   Level: developer
798ca3d3a14SMatthew G. Knepley 
799a1cb98faSBarry Smith   Note:
800a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
801a1cb98faSBarry Smith 
8021cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
803ca3d3a14SMatthew G. Knepley @*/
804d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv)
805d71ae5a4SJacob Faibussowitsch {
806ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
807ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
808ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
8099566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE));
8103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
811ca3d3a14SMatthew G. Knepley }
812ca3d3a14SMatthew G. Knepley 
813ca3d3a14SMatthew G. Knepley /*@
814ca3d3a14SMatthew G. Knepley   DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis
815ca3d3a14SMatthew G. Knepley 
816ca3d3a14SMatthew G. Knepley   Input Parameters:
817a1cb98faSBarry Smith + dm - The `DM`
818ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis
819ca3d3a14SMatthew G. Knepley 
8202fe279fdSBarry Smith   Output Parameter:
821ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis
822ca3d3a14SMatthew G. Knepley 
823ca3d3a14SMatthew G. Knepley   Level: developer
824ca3d3a14SMatthew G. Knepley 
825a1cb98faSBarry Smith   Note:
826a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
827a1cb98faSBarry Smith 
8281cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
829ca3d3a14SMatthew G. Knepley @*/
830d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv)
831d71ae5a4SJacob Faibussowitsch {
832ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
833ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
834ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
8359566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE));
8363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
837ca3d3a14SMatthew G. Knepley }
838ca3d3a14SMatthew G. Knepley 
839ca3d3a14SMatthew G. Knepley /*@
840ca3d3a14SMatthew G. Knepley   DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions
841ca3d3a14SMatthew G. Knepley   and global solutions, to a local basis, appropriate for discretization integrals and assembly.
842ca3d3a14SMatthew G. Knepley 
843ca3d3a14SMatthew G. Knepley   Input Parameters:
844a1cb98faSBarry Smith + dm    - The `DM`
845ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one
846ca3d3a14SMatthew G. Knepley . beta  - The second Euler angle
847f0fc11ceSJed Brown - gamma - The third Euler angle
848ca3d3a14SMatthew G. Knepley 
849ca3d3a14SMatthew G. Knepley   Level: developer
850ca3d3a14SMatthew G. Knepley 
851a1cb98faSBarry Smith   Note:
852a1cb98faSBarry Smith   Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
853a1cb98faSBarry Smith   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows
854a1cb98faSBarry Smith .vb
855a1cb98faSBarry Smith    The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
856a1cb98faSBarry Smith    The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
857a1cb98faSBarry Smith    The XYZ system rotates a third time about the z axis by gamma.
858a1cb98faSBarry Smith .ve
859a1cb98faSBarry Smith 
8601cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`
861ca3d3a14SMatthew G. Knepley @*/
862d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma)
863d71ae5a4SJacob Faibussowitsch {
864ca3d3a14SMatthew G. Knepley   RotCtx  *rc;
865ca3d3a14SMatthew G. Knepley   PetscInt cdim;
866ca3d3a14SMatthew G. Knepley 
867362febeeSStefano Zampini   PetscFunctionBegin;
8689566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
8699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &rc));
870ca3d3a14SMatthew G. Knepley   dm->transformCtx       = rc;
871ca3d3a14SMatthew G. Knepley   dm->transformSetUp     = DMPlexBasisTransformSetUp_Rotation_Internal;
872ca3d3a14SMatthew G. Knepley   dm->transformDestroy   = DMPlexBasisTransformDestroy_Rotation_Internal;
873ca3d3a14SMatthew G. Knepley   dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal;
874ca3d3a14SMatthew G. Knepley   rc->dim                = cdim;
875ca3d3a14SMatthew G. Knepley   rc->alpha              = alpha;
876ca3d3a14SMatthew G. Knepley   rc->beta               = beta;
877ca3d3a14SMatthew G. Knepley   rc->gamma              = gamma;
8789566063dSJacob Faibussowitsch   PetscCall((*dm->transformSetUp)(dm, dm->transformCtx));
8799566063dSJacob Faibussowitsch   PetscCall(DMConstructBasisTransform_Internal(dm));
8803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
881ca3d3a14SMatthew G. Knepley }
882ca3d3a14SMatthew G. Knepley 
883b278463cSMatthew G. Knepley /*@C
884ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates
885b278463cSMatthew G. Knepley 
886b278463cSMatthew G. Knepley   Input Parameters:
887a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
888b278463cSMatthew G. Knepley . time   - The time
889b278463cSMatthew G. Knepley . field  - The field to constrain
8901c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
89120f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
892a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
893a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
894b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
895b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
896b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
897b278463cSMatthew G. Knepley 
898b278463cSMatthew G. Knepley   Output Parameter:
899b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
900b278463cSMatthew G. Knepley 
901b278463cSMatthew G. Knepley   Level: developer
902b278463cSMatthew G. Knepley 
9031cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
904b278463cSMatthew G. Knepley @*/
905d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
906d71ae5a4SJacob Faibussowitsch {
9070163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
90855f2e967SMatthew G. Knepley   void   **ctxs;
909d7ddef95SMatthew G. Knepley   PetscInt numFields;
910d7ddef95SMatthew G. Knepley 
911d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
9129566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
914d7ddef95SMatthew G. Knepley   funcs[field] = func;
915d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
9169566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX));
9179566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
919d7ddef95SMatthew G. Knepley }
920d7ddef95SMatthew G. Knepley 
921b278463cSMatthew G. Knepley /*@C
922ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data
923b278463cSMatthew G. Knepley 
924b278463cSMatthew G. Knepley   Input Parameters:
925a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
926b278463cSMatthew G. Knepley . time   - The time
927b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
928b278463cSMatthew G. Knepley . field  - The field to constrain
9291c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
93020f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
931a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
932a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
933b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
934b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
935b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
936b278463cSMatthew G. Knepley 
937b278463cSMatthew G. Knepley   Output Parameter:
938b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
939b278463cSMatthew G. Knepley 
940b278463cSMatthew G. Knepley   Level: developer
941b278463cSMatthew G. Knepley 
9421cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
943b278463cSMatthew G. Knepley @*/
944d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
945d71ae5a4SJacob Faibussowitsch {
9469371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
947c60e475cSMatthew G. Knepley   void   **ctxs;
948c60e475cSMatthew G. Knepley   PetscInt numFields;
949c60e475cSMatthew G. Knepley 
950c60e475cSMatthew G. Knepley   PetscFunctionBegin;
9519566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9529566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
953c60e475cSMatthew G. Knepley   funcs[field] = func;
954c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
9559566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
9569566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
958c60e475cSMatthew G. Knepley }
959c60e475cSMatthew G. Knepley 
960b278463cSMatthew G. Knepley /*@C
961d5b43468SJose E. Roman   DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data
962ece3a9fcSMatthew G. Knepley 
96320f4b53cSBarry Smith   Collective
964ece3a9fcSMatthew G. Knepley 
965ece3a9fcSMatthew G. Knepley   Input Parameters:
966a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
967ece3a9fcSMatthew G. Knepley . time   - The time
968ece3a9fcSMatthew G. Knepley . locU   - A local vector with the input solution values
969ece3a9fcSMatthew G. Knepley . field  - The field to constrain
970ece3a9fcSMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
97120f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
972a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
973a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
974ece3a9fcSMatthew G. Knepley . ids    - An array of ids for constrained points
97520f4b53cSBarry Smith . func   - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()`
97620f4b53cSBarry Smith - ctx    - An optional user context for `func`
977ece3a9fcSMatthew G. Knepley 
978ece3a9fcSMatthew G. Knepley   Output Parameter:
979ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values
980ece3a9fcSMatthew G. Knepley 
981ece3a9fcSMatthew G. Knepley   Level: developer
982ece3a9fcSMatthew G. Knepley 
9831cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
984ece3a9fcSMatthew G. Knepley @*/
985d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
986d71ae5a4SJacob Faibussowitsch {
9879371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
988ece3a9fcSMatthew G. Knepley   void   **ctxs;
989ece3a9fcSMatthew G. Knepley   PetscInt numFields;
990ece3a9fcSMatthew G. Knepley 
991ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
9929566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
994ece3a9fcSMatthew G. Knepley   funcs[field] = func;
995ece3a9fcSMatthew G. Knepley   ctxs[field]  = ctx;
9969566063dSJacob Faibussowitsch   PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
9979566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
999ece3a9fcSMatthew G. Knepley }
1000ece3a9fcSMatthew G. Knepley 
1001ece3a9fcSMatthew G. Knepley /*@C
1002b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
1003b278463cSMatthew G. Knepley 
1004b278463cSMatthew G. Knepley   Input Parameters:
1005a1cb98faSBarry Smith + dm           - The `DM`, with a `PetscDS` that matches the problem being constrained
1006b278463cSMatthew G. Knepley . time         - The time
1007b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
1008b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
1009b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
1010b278463cSMatthew G. Knepley . field        - The field to constrain
10111c531cf8SMatthew G. Knepley . Nc           - The number of constrained field components, or 0 for all components
101220f4b53cSBarry Smith . comps        - An array of constrained component numbers, or `NULL` for all components
1013a1cb98faSBarry Smith . label        - The `DMLabel` defining constrained points
1014a1cb98faSBarry Smith . numids       - The number of `DMLabel` ids for constrained points
1015b278463cSMatthew G. Knepley . ids          - An array of ids for constrained points
1016b278463cSMatthew G. Knepley . func         - A pointwise function giving boundary values
1017b278463cSMatthew G. Knepley - ctx          - An optional user context for bcFunc
1018b278463cSMatthew G. Knepley 
1019b278463cSMatthew G. Knepley   Output Parameter:
1020b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
1021b278463cSMatthew G. Knepley 
1022b278463cSMatthew G. Knepley   Level: developer
1023b278463cSMatthew G. Knepley 
1024a1cb98faSBarry Smith   Note:
1025a1cb98faSBarry Smith   This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()`
1026a1cb98faSBarry Smith 
10271cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
1028b278463cSMatthew G. Knepley @*/
1029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX)
1030d71ae5a4SJacob Faibussowitsch {
103161f58d28SMatthew G. Knepley   PetscDS            prob;
1032da97024aSMatthew G. Knepley   PetscSF            sf;
1033d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
103420369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
1035da97024aSMatthew G. Knepley   const PetscInt    *leaves;
1036d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
1037520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
10383ba16761SJacob Faibussowitsch   PetscErrorCode     ierru = PETSC_SUCCESS;
1039d7ddef95SMatthew G. Knepley 
1040d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
10419566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
10429566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
1043da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
10449566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
10459566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
10469566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10479566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
10489566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
104920369375SToby Isaac   if (cellGeometry) {
10509566063dSJacob Faibussowitsch     PetscCall(VecGetDM(cellGeometry, &dmCell));
10519566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
105220369375SToby Isaac   }
1053d7ddef95SMatthew G. Knepley   if (Grad) {
1054c0a6632aSMatthew G. Knepley     PetscFV fv;
1055c0a6632aSMatthew G. Knepley 
10569566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv));
10579566063dSJacob Faibussowitsch     PetscCall(VecGetDM(Grad, &dmGrad));
10589566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(Grad, &grad));
10599566063dSJacob Faibussowitsch     PetscCall(PetscFVGetNumComponents(fv, &pdim));
10609566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx));
1061d7ddef95SMatthew G. Knepley   }
10629566063dSJacob Faibussowitsch   PetscCall(VecGetArray(locX, &x));
1063d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
1064d7ddef95SMatthew G. Knepley     IS              faceIS;
1065d7ddef95SMatthew G. Knepley     const PetscInt *faces;
1066d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
1067d7ddef95SMatthew G. Knepley 
10689566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS));
1069d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
10709566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
10719566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
1072d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
1073d7ddef95SMatthew G. Knepley       const PetscInt   face = faces[f], *cells;
1074640bce14SSatish Balay       PetscFVFaceGeom *fg;
1075d7ddef95SMatthew G. Knepley 
1076d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
10779566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc));
1078da97024aSMatthew G. Knepley       if (loc >= 0) continue;
10799566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
10809566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, face, &cells));
1081d7ddef95SMatthew G. Knepley       if (Grad) {
1082640bce14SSatish Balay         PetscFVCellGeom *cg;
1083640bce14SSatish Balay         PetscScalar     *cx, *cgrad;
1084d7ddef95SMatthew G. Knepley         PetscScalar     *xG;
1085d7ddef95SMatthew G. Knepley         PetscReal        dx[3];
1086d7ddef95SMatthew G. Knepley         PetscInt         d;
1087d7ddef95SMatthew G. Knepley 
10889566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg));
10899566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx));
10909566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad));
10919566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
1092d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
1093d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx);
10949566063dSJacob Faibussowitsch         PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx));
1095d7ddef95SMatthew G. Knepley       } else {
1096640bce14SSatish Balay         PetscScalar *xI;
1097d7ddef95SMatthew G. Knepley         PetscScalar *xG;
1098d7ddef95SMatthew G. Knepley 
10999566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI));
11009566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
1101e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
1102e735a8a9SMatthew G. Knepley         if (ierru) {
11039566063dSJacob Faibussowitsch           PetscCall(ISRestoreIndices(faceIS, &faces));
11049566063dSJacob Faibussowitsch           PetscCall(ISDestroy(&faceIS));
1105e735a8a9SMatthew G. Knepley           goto cleanup;
1106e735a8a9SMatthew G. Knepley         }
1107d7ddef95SMatthew G. Knepley       }
1108d7ddef95SMatthew G. Knepley     }
11099566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
11109566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
1111d7ddef95SMatthew G. Knepley   }
1112e735a8a9SMatthew G. Knepley cleanup:
11139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(locX, &x));
1114d7ddef95SMatthew G. Knepley   if (Grad) {
11159566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx));
11169566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(Grad, &grad));
1117d7ddef95SMatthew G. Knepley   }
11189566063dSJacob Faibussowitsch   if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
11199566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
11209566063dSJacob Faibussowitsch   PetscCall(ierru);
11213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1122d7ddef95SMatthew G. Knepley }
1123d7ddef95SMatthew G. Knepley 
1124d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
1125d71ae5a4SJacob Faibussowitsch {
11260c364540SMatthew G. Knepley   PetscInt c;
11270c364540SMatthew G. Knepley   for (c = 0; c < Nc; ++c) u[c] = 0.0;
11283ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
11290c364540SMatthew G. Knepley }
11300c364540SMatthew G. Knepley 
1131d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1132d71ae5a4SJacob Faibussowitsch {
11330c364540SMatthew G. Knepley   PetscObject isZero;
1134e5e52638SMatthew G. Knepley   PetscDS     prob;
1135d7ddef95SMatthew G. Knepley   PetscInt    numBd, b;
113655f2e967SMatthew G. Knepley 
113755f2e967SMatthew G. Knepley   PetscFunctionBegin;
11389566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
11399566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
11409566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
1141450c7a9fSMatthew G. Knepley   PetscCall(PetscDSUpdateBoundaryLabels(prob, dm));
114255f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
114345480ffeSMatthew G. Knepley     PetscWeakForm           wf;
1144f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
114545480ffeSMatthew G. Knepley     const char             *name;
1146d7ddef95SMatthew G. Knepley     DMLabel                 label;
11471c531cf8SMatthew G. Knepley     PetscInt                field, Nc;
11481c531cf8SMatthew G. Knepley     const PetscInt         *comps;
1149d7ddef95SMatthew G. Knepley     PetscObject             obj;
1150d7ddef95SMatthew G. Knepley     PetscClassId            id;
115145480ffeSMatthew G. Knepley     void (*bvfunc)(void);
1152d7ddef95SMatthew G. Knepley     PetscInt        numids;
1153d7ddef95SMatthew G. Knepley     const PetscInt *ids;
115455f2e967SMatthew G. Knepley     void           *ctx;
115555f2e967SMatthew G. Knepley 
11569566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
1157f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
11589566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
11599566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1160d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1161c60e475cSMatthew G. Knepley       switch (type) {
1162c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
11639371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
11648434afd1SBarry Smith         PetscSimplePointFn *func = (PetscSimplePointFn *)bvfunc;
116545480ffeSMatthew G. Knepley 
116645480ffeSMatthew G. Knepley         if (isZero) func = zero;
11679566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11689566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX));
11699566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11709371c9d4SSatish Balay       } break;
11719371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
117245480ffeSMatthew G. Knepley         PetscPointFunc func = (PetscPointFunc)bvfunc;
117345480ffeSMatthew G. Knepley 
11749566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11759566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX));
11769566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11779371c9d4SSatish Balay       } break;
1178d71ae5a4SJacob Faibussowitsch       default:
1179d71ae5a4SJacob Faibussowitsch         break;
1180c60e475cSMatthew G. Knepley       }
1181d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
118245480ffeSMatthew G. Knepley       {
118345480ffeSMatthew G. Knepley         PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode (*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc;
118445480ffeSMatthew G. Knepley 
118543ea7facSMatthew G. Knepley         if (!faceGeomFVM) continue;
11869566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX));
118745480ffeSMatthew G. Knepley       }
118863a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
118955f2e967SMatthew G. Knepley   }
11903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
119155f2e967SMatthew G. Knepley }
119255f2e967SMatthew G. Knepley 
1193d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1194d71ae5a4SJacob Faibussowitsch {
119556cf3b9cSMatthew G. Knepley   PetscObject isZero;
119656cf3b9cSMatthew G. Knepley   PetscDS     prob;
119756cf3b9cSMatthew G. Knepley   PetscInt    numBd, b;
119856cf3b9cSMatthew G. Knepley 
119956cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
12003ba16761SJacob Faibussowitsch   if (!locX) PetscFunctionReturn(PETSC_SUCCESS);
12019566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
12029566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
12039566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
120456cf3b9cSMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
120545480ffeSMatthew G. Knepley     PetscWeakForm           wf;
120656cf3b9cSMatthew G. Knepley     DMBoundaryConditionType type;
120745480ffeSMatthew G. Knepley     const char             *name;
120856cf3b9cSMatthew G. Knepley     DMLabel                 label;
120956cf3b9cSMatthew G. Knepley     PetscInt                field, Nc;
121056cf3b9cSMatthew G. Knepley     const PetscInt         *comps;
121156cf3b9cSMatthew G. Knepley     PetscObject             obj;
121256cf3b9cSMatthew G. Knepley     PetscClassId            id;
121356cf3b9cSMatthew G. Knepley     PetscInt                numids;
121456cf3b9cSMatthew G. Knepley     const PetscInt         *ids;
121545480ffeSMatthew G. Knepley     void (*bvfunc)(void);
121656cf3b9cSMatthew G. Knepley     void *ctx;
121756cf3b9cSMatthew G. Knepley 
12189566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx));
121956cf3b9cSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
12209566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
12219566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
122256cf3b9cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
122356cf3b9cSMatthew G. Knepley       switch (type) {
122456cf3b9cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
12259371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
12268434afd1SBarry Smith         PetscSimplePointFn *func_t = (PetscSimplePointFn *)bvfunc;
122745480ffeSMatthew G. Knepley 
122845480ffeSMatthew G. Knepley         if (isZero) func_t = zero;
12299566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
12309566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
12319566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
12329371c9d4SSatish Balay       } break;
12339371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
123445480ffeSMatthew G. Knepley         PetscPointFunc func_t = (PetscPointFunc)bvfunc;
123545480ffeSMatthew G. Knepley 
12369566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
12379566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
12389566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
12399371c9d4SSatish Balay       } break;
1240d71ae5a4SJacob Faibussowitsch       default:
1241d71ae5a4SJacob Faibussowitsch         break;
124256cf3b9cSMatthew G. Knepley       }
124363a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
124456cf3b9cSMatthew G. Knepley   }
12453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
124656cf3b9cSMatthew G. Knepley }
124756cf3b9cSMatthew G. Knepley 
1248f1d73a7aSMatthew G. Knepley /*@
1249f1d73a7aSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
1250f1d73a7aSMatthew G. Knepley 
1251ed808b8fSJed Brown   Not Collective
1252ed808b8fSJed Brown 
1253f1d73a7aSMatthew G. Knepley   Input Parameters:
1254a1cb98faSBarry Smith + dm              - The `DM`
1255f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
1256f1d73a7aSMatthew G. Knepley . time            - The time
1257f1d73a7aSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
1258f1d73a7aSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
1259f1d73a7aSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
1260f1d73a7aSMatthew G. Knepley 
12612fe279fdSBarry Smith   Output Parameter:
1262f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values
1263f1d73a7aSMatthew G. Knepley 
1264ed808b8fSJed Brown   Level: intermediate
1265f1d73a7aSMatthew G. Knepley 
12661cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()`
1267f1d73a7aSMatthew G. Knepley @*/
1268d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1269d71ae5a4SJacob Faibussowitsch {
1270f1d73a7aSMatthew G. Knepley   PetscFunctionBegin;
1271f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1272064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
1273ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1274ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1275ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1276cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM));
12773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1278f1d73a7aSMatthew G. Knepley }
1279f1d73a7aSMatthew G. Knepley 
128056cf3b9cSMatthew G. Knepley /*@
1281a5b23f4aSJose E. Roman   DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector
128256cf3b9cSMatthew G. Knepley 
128356cf3b9cSMatthew G. Knepley   Input Parameters:
1284a1cb98faSBarry Smith + dm              - The `DM`
128556cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
128656cf3b9cSMatthew G. Knepley . time            - The time
128756cf3b9cSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
128856cf3b9cSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
128956cf3b9cSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
129056cf3b9cSMatthew G. Knepley 
12912fe279fdSBarry Smith   Output Parameter:
129256cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values
129356cf3b9cSMatthew G. Knepley 
129456cf3b9cSMatthew G. Knepley   Level: developer
129556cf3b9cSMatthew G. Knepley 
12961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`
129756cf3b9cSMatthew G. Knepley @*/
1298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1299d71ae5a4SJacob Faibussowitsch {
130056cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
130156cf3b9cSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1302ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3);
1303ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1304ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1305ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
13066c51210dSStefano Zampini   PetscTryMethod(dm, "DMPlexInsertTimeDerivativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM));
13073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
130856cf3b9cSMatthew G. Knepley }
130956cf3b9cSMatthew G. Knepley 
13105962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values
13115962854dSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesFVM(DM dm, PetscFV fv, Vec locX, PetscReal time, Vec *locGradient)
13125962854dSMatthew G. Knepley {
13135962854dSMatthew G. Knepley   DM  dmGrad;
13145962854dSMatthew G. Knepley   Vec cellGeometryFVM, faceGeometryFVM, locGrad = NULL;
13155962854dSMatthew G. Knepley 
13165962854dSMatthew G. Knepley   PetscFunctionBegin;
13175962854dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13185962854dSMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
13195962854dSMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
13205962854dSMatthew G. Knepley   if (locGradient) {
13215962854dSMatthew G. Knepley     PetscAssertPointer(locGradient, 5);
13225962854dSMatthew G. Knepley     *locGradient = NULL;
13235962854dSMatthew G. Knepley   }
13245962854dSMatthew G. Knepley   PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
13255962854dSMatthew G. Knepley   /* Reconstruct and limit cell gradients */
13265962854dSMatthew G. Knepley   PetscCall(DMPlexGetGradientDM(dm, fv, &dmGrad));
13275962854dSMatthew G. Knepley   if (dmGrad) {
13285962854dSMatthew G. Knepley     Vec      grad;
13295962854dSMatthew G. Knepley     PetscInt fStart, fEnd;
13305962854dSMatthew G. Knepley 
13315962854dSMatthew G. Knepley     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
13325962854dSMatthew G. Knepley     PetscCall(DMGetGlobalVector(dmGrad, &grad));
13335962854dSMatthew G. Knepley     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
13345962854dSMatthew G. Knepley     /* Communicate gradient values */
13355962854dSMatthew G. Knepley     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
13365962854dSMatthew G. Knepley     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
13375962854dSMatthew G. Knepley     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
13385962854dSMatthew G. Knepley     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
13395962854dSMatthew G. Knepley   }
13405962854dSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad));
13415962854dSMatthew G. Knepley   if (locGradient) *locGradient = locGrad;
13425962854dSMatthew G. Knepley   else if (locGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
13435962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
13445962854dSMatthew G. Knepley }
13455962854dSMatthew G. Knepley 
1346d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1347d71ae5a4SJacob Faibussowitsch {
1348574a98acSMatthew G. Knepley   Vec localX;
1349574a98acSMatthew G. Knepley 
1350574a98acSMatthew G. Knepley   PetscFunctionBegin;
13519566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
13529566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL));
13539566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
13549566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
13559566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff));
13569566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
13573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1358574a98acSMatthew G. Knepley }
1359574a98acSMatthew G. Knepley 
1360574a98acSMatthew G. Knepley /*@C
136160225df5SJacob Faibussowitsch   DMPlexComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
1362574a98acSMatthew G. Knepley 
136320f4b53cSBarry Smith   Collective
1364c0f8e1fdSMatthew G. Knepley 
1365574a98acSMatthew G. Knepley   Input Parameters:
1366a1cb98faSBarry Smith + dm     - The `DM`
1367574a98acSMatthew G. Knepley . time   - The time
1368574a98acSMatthew G. Knepley . funcs  - The functions to evaluate for each field component
136920f4b53cSBarry Smith . ctxs   - Optional array of contexts to pass to each function, or `NULL`.
1370574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector
1371574a98acSMatthew G. Knepley 
1372574a98acSMatthew G. Knepley   Output Parameter:
1373574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2
1374574a98acSMatthew G. Knepley 
1375574a98acSMatthew G. Knepley   Level: developer
1376574a98acSMatthew G. Knepley 
13771cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1378574a98acSMatthew G. Knepley @*/
1379d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff)
1380d71ae5a4SJacob Faibussowitsch {
13810f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1382ca3d3a14SMatthew G. Knepley   DM               tdm;
1383ca3d3a14SMatthew G. Knepley   Vec              tv;
1384cb1e1211SMatthew G Knepley   PetscSection     section;
1385c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
13864bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
138715496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
13884bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
1389cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
13907318780aSToby Isaac   const PetscReal *quadWeights;
1391412e9a14SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset;
1392ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1393cb1e1211SMatthew G Knepley 
1394cb1e1211SMatthew G Knepley   PetscFunctionBegin;
13959566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
13969566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
13972a4e142eSMatthew G. Knepley   fegeom.dimEmbed = coordDim;
13989566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
13999566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
14009566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
14019566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
14029566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1403eae3dc7dSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
1404cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
140515496722SMatthew G. Knepley     PetscObject  obj;
140615496722SMatthew G. Knepley     PetscClassId id;
1407c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
1408c5bbbd5bSMatthew G. Knepley 
14099566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
14109566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
141115496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
141215496722SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
141315496722SMatthew G. Knepley 
14149566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
14159566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
141615496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
141715496722SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
141815496722SMatthew G. Knepley 
14199566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
14209566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
142163a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1422c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
1423cb1e1211SMatthew G Knepley   }
14249566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
142563a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
1426c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
14279566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
14289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
1429cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
1430a1e44745SMatthew G. Knepley     PetscScalar *x        = NULL;
1431cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
14329c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1433cb1e1211SMatthew G Knepley 
14349566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1435e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
1436cb1e1211SMatthew G Knepley 
143715496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
143815496722SMatthew G. Knepley       PetscObject  obj;
143915496722SMatthew G. Knepley       PetscClassId id;
1440c110b1eeSGeoffrey Irving       void *const  ctx = ctxs ? ctxs[field] : NULL;
144115496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1442cb1e1211SMatthew G Knepley 
14439566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
14449566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
14459371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
14469371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
14479371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
14489371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
14499371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
14509371c9d4SSatish Balay         Nb = 1;
14519371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1452cb1e1211SMatthew G Knepley       if (debug) {
1453cb1e1211SMatthew G Knepley         char title[1024];
145463a3b9bcSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
14559566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1456cb1e1211SMatthew G Knepley       }
14577318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
14582a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1459d0609cedSBarry Smith         PetscErrorCode ierr;
14602a4e142eSMatthew G. Knepley 
14612a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
14622a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
14632a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
14642a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
146563a3b9bcSJacob Faibussowitsch         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1466d3a7d86cSMatthew G. Knepley         if (transform) {
1467d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
14689566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1469d3a7d86cSMatthew G. Knepley         } else {
1470d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1471d3a7d86cSMatthew G. Knepley         }
14729566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
1473ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx);
1474e735a8a9SMatthew G. Knepley         if (ierr) {
14759566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14769566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
14779566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1478e735a8a9SMatthew G. Knepley         }
14799566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
14809566063dSJacob Faibussowitsch         if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
14819566063dSJacob Faibussowitsch         else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
14822df84da0SMatthew G. Knepley         else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
148315496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1484beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
14859371c9d4SSatish Balay           if (debug)
1486835f2295SStefano Zampini             PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0),
14879371c9d4SSatish Balay                                   (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc])));
14884bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1489cb1e1211SMatthew G Knepley         }
1490cb1e1211SMatthew G Knepley       }
14919c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
1492beaa55a6SMatthew G. Knepley       qc += Nc;
1493cb1e1211SMatthew G Knepley     }
14949566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14959566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
1496cb1e1211SMatthew G Knepley     localDiff += elemDiff;
1497cb1e1211SMatthew G Knepley   }
14989566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1499462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
1500cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
15013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1502cb1e1211SMatthew G Knepley }
1503cb1e1211SMatthew G Knepley 
1504d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
1505d71ae5a4SJacob Faibussowitsch {
15060f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1507ca3d3a14SMatthew G. Knepley   DM               tdm;
1508cb1e1211SMatthew G Knepley   PetscSection     section;
150940e14135SMatthew G. Knepley   PetscQuadrature  quad;
1510ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
15119c3cf19fSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
15122a4e142eSMatthew G. Knepley   const PetscReal *quadWeights;
15134bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
15144bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
151540e14135SMatthew G. Knepley   PetscReal        localDiff = 0.0;
1516485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset;
1517ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1518cb1e1211SMatthew G Knepley 
1519cb1e1211SMatthew G Knepley   PetscFunctionBegin;
15209566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
15219566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
15224bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
15239566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
15259566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
15269566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
15279566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
15289566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
15299566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
15309566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1531652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
15320f2d7e86SMatthew G. Knepley     PetscFE  fe;
153340e14135SMatthew G. Knepley     PetscInt Nc;
1534652b88e8SMatthew G. Knepley 
15359566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
15369566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
15379566063dSJacob Faibussowitsch     PetscCall(PetscFEGetNumComponents(fe, &Nc));
153840e14135SMatthew G. Knepley     numComponents += Nc;
1539652b88e8SMatthew G. Knepley   }
15409566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
154163a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
15429566063dSJacob Faibussowitsch   /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */
1543c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ));
15449566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
154540e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
154640e14135SMatthew G. Knepley     PetscScalar *x        = NULL;
154740e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
15489c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1549652b88e8SMatthew G. Knepley 
15509566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1551e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
155240e14135SMatthew G. Knepley 
15539c3cf19fSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
15540f2d7e86SMatthew G. Knepley       PetscFE     fe;
155551259fa3SMatthew G. Knepley       void *const ctx = ctxs ? ctxs[field] : NULL;
15569c3cf19fSMatthew G. Knepley       PetscInt    Nb, Nc, q, fc;
155740e14135SMatthew G. Knepley 
15589566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
15599566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
15609566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
156140e14135SMatthew G. Knepley       if (debug) {
156240e14135SMatthew G. Knepley         char title[1024];
15639566063dSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
15649566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1565652b88e8SMatthew G. Knepley       }
15669c3cf19fSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
15672a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1568d0609cedSBarry Smith         PetscErrorCode ierr;
15692a4e142eSMatthew G. Knepley 
15702a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
15712a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
15722a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
15732a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
15742df84da0SMatthew G. Knepley         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1575d3a7d86cSMatthew G. Knepley         if (transform) {
1576d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
15779566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1578d3a7d86cSMatthew G. Knepley         } else {
1579d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1580d3a7d86cSMatthew G. Knepley         }
15819566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
15824bee2e38SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx);
1583e735a8a9SMatthew G. Knepley         if (ierr) {
15849566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
15859566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
15869566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
1587e735a8a9SMatthew G. Knepley         }
15889566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
15899566063dSJacob Faibussowitsch         PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant));
15904bee2e38SMatthew G. Knepley         /* Overwrite with the dot product if the normal is given */
15914bee2e38SMatthew G. Knepley         if (n) {
15924bee2e38SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
15934bee2e38SMatthew G. Knepley             PetscScalar sum = 0.0;
15944bee2e38SMatthew G. Knepley             PetscInt    d;
15954bee2e38SMatthew G. Knepley             for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d];
15964bee2e38SMatthew G. Knepley             interpolant[fc] = sum;
15974bee2e38SMatthew G. Knepley           }
15984bee2e38SMatthew G. Knepley         }
15999c3cf19fSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1600beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
160163a3b9bcSJacob Faibussowitsch           if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
16024bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
160340e14135SMatthew G. Knepley         }
160440e14135SMatthew G. Knepley       }
16059c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
16069c3cf19fSMatthew G. Knepley       qc += Nc;
160740e14135SMatthew G. Knepley     }
16089566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
160963a3b9bcSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
161040e14135SMatthew G. Knepley     localDiff += elemDiff;
161140e14135SMatthew G. Knepley   }
16129566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
16139566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
1614462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
161540e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
16163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1617cb1e1211SMatthew G Knepley }
1618cb1e1211SMatthew G Knepley 
1619d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1620d71ae5a4SJacob Faibussowitsch {
16210f09c10fSMatthew G. Knepley   const PetscInt debug = ((DM_Plex *)dm->data)->printL2;
1622ca3d3a14SMatthew G. Knepley   DM             tdm;
1623083401c6SMatthew G. Knepley   DMLabel        depthLabel;
162473d901b8SMatthew G. Knepley   PetscSection   section;
1625ca3d3a14SMatthew G. Knepley   Vec            localX, tv;
162673d901b8SMatthew G. Knepley   PetscReal     *localDiff;
1627083401c6SMatthew G. Knepley   PetscInt       dim, depth, dE, Nf, f, Nds, s;
1628ca3d3a14SMatthew G. Knepley   PetscBool      transform;
1629835f2295SStefano Zampini   PetscMPIInt    Nfi;
163073d901b8SMatthew G. Knepley 
163173d901b8SMatthew G. Knepley   PetscFunctionBegin;
16329566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16339566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
16349566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
16359566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
16369566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
16379566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
16389566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
16399566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
16409566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
16419566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(depthLabel, &depth));
1642083401c6SMatthew G. Knepley 
16439566063dSJacob Faibussowitsch   PetscCall(VecSet(localX, 0.0));
16449566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
16459566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
16469566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
16479566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
16489566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nf, &localDiff));
1649083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
1650083401c6SMatthew G. Knepley     PetscDS          ds;
1651083401c6SMatthew G. Knepley     DMLabel          label;
1652083401c6SMatthew G. Knepley     IS               fieldIS, pointIS;
1653083401c6SMatthew G. Knepley     const PetscInt  *fields, *points = NULL;
1654083401c6SMatthew G. Knepley     PetscQuadrature  quad;
1655083401c6SMatthew G. Knepley     const PetscReal *quadPoints, *quadWeights;
1656083401c6SMatthew G. Knepley     PetscFEGeom      fegeom;
1657083401c6SMatthew G. Knepley     PetscReal       *coords, *gcoords;
1658083401c6SMatthew G. Knepley     PetscScalar     *funcVal, *interpolant;
16595fedec97SMatthew G. Knepley     PetscBool        isCohesive;
1660083401c6SMatthew G. Knepley     PetscInt         qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf;
166173d901b8SMatthew G. Knepley 
166207218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
16639566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
16649566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
16659566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
16669566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalComponents(ds, &totNc));
16679566063dSJacob Faibussowitsch     PetscCall(PetscDSGetQuadrature(ds, &quad));
16689566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
166963a3b9bcSJacob Faibussowitsch     PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc);
16709566063dSJacob Faibussowitsch     PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ));
1671083401c6SMatthew G. Knepley     if (!label) {
16729566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1673083401c6SMatthew G. Knepley     } else {
16749566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
16759566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &cEnd));
16769566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
1677083401c6SMatthew G. Knepley     }
167873d901b8SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
1679083401c6SMatthew G. Knepley       const PetscInt  cell = points ? points[c] : c;
168073d901b8SMatthew G. Knepley       PetscScalar    *x    = NULL;
16815fedec97SMatthew G. Knepley       const PetscInt *cone;
16825fedec97SMatthew G. Knepley       PetscInt        qc = 0, fOff = 0, dep;
168373d901b8SMatthew G. Knepley 
16849566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(depthLabel, cell, &dep));
1685083401c6SMatthew G. Knepley       if (dep != depth - 1) continue;
16865fedec97SMatthew G. Knepley       if (isCohesive) {
16879566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cell, &cone));
16889566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
168996959cd1SMatthew G. Knepley       } else {
16909566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
169196959cd1SMatthew G. Knepley       }
1692e8e188d2SZach Atkins       PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, cell, 0, NULL, &x));
16935fedec97SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
169415496722SMatthew G. Knepley         PetscObject  obj;
169515496722SMatthew G. Knepley         PetscClassId id;
1696083401c6SMatthew G. Knepley         void *const  ctx = ctxs ? ctxs[fields[f]] : NULL;
169715496722SMatthew G. Knepley         PetscInt     Nb, Nc, q, fc;
169815496722SMatthew G. Knepley         PetscReal    elemDiff = 0.0;
16995fedec97SMatthew G. Knepley         PetscBool    cohesive;
170015496722SMatthew G. Knepley 
17019566063dSJacob Faibussowitsch         PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
17029566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
17039566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
17049371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
17059371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
17069371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
17079371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
17089371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
17099371c9d4SSatish Balay           Nb = 1;
17109371c9d4SSatish Balay         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
1711c82db6dbSMatthew G. Knepley         if (isCohesive && !cohesive) {
1712c82db6dbSMatthew G. Knepley           fOff += Nb * 2;
1713c82db6dbSMatthew G. Knepley           qc += Nc;
1714c82db6dbSMatthew G. Knepley           continue;
1715c82db6dbSMatthew G. Knepley         }
171673d901b8SMatthew G. Knepley         if (debug) {
171773d901b8SMatthew G. Knepley           char title[1024];
171863a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f]));
17199566063dSJacob Faibussowitsch           PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff]));
172073d901b8SMatthew G. Knepley         }
17217318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
17222a4e142eSMatthew G. Knepley           PetscFEGeom    qgeom;
1723d0609cedSBarry Smith           PetscErrorCode ierr;
17242a4e142eSMatthew G. Knepley 
17252a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
1726083401c6SMatthew G. Knepley           qgeom.J        = &fegeom.J[q * dE * dE];
1727083401c6SMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * dE * dE];
17282a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
172963a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
1730d3a7d86cSMatthew G. Knepley           if (transform) {
1731083401c6SMatthew G. Knepley             gcoords = &coords[dE * Nq];
17329566063dSJacob Faibussowitsch             PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx));
1733d3a7d86cSMatthew G. Knepley           } else {
1734083401c6SMatthew G. Knepley             gcoords = &coords[dE * q];
1735d3a7d86cSMatthew G. Knepley           }
17362df84da0SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.;
1737083401c6SMatthew G. Knepley           ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx);
1738e735a8a9SMatthew G. Knepley           if (ierr) {
17399566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
17409566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
17419566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1742e735a8a9SMatthew G. Knepley           }
17439566063dSJacob Faibussowitsch           if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
174496959cd1SMatthew G. Knepley           /* Call once for each face, except for lagrange field */
17459566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant));
17469566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant));
174763a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
174815496722SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1749beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
17509371c9d4SSatish Balay             if (debug)
1751835f2295SStefano Zampini               PetscCall(PetscPrintf(PETSC_COMM_SELF, "    cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0), (double)(dE > 1 ? coords[dE * q + 1] : 0), (double)(dE > 2 ? coords[dE * q + 2] : 0),
17529371c9d4SSatish Balay                                     (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
17534bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
175473d901b8SMatthew G. Knepley           }
175573d901b8SMatthew G. Knepley         }
1756083401c6SMatthew G. Knepley         fOff += Nb;
17579c3cf19fSMatthew G. Knepley         qc += Nc;
1758083401c6SMatthew G. Knepley         localDiff[fields[f]] += elemDiff;
175963a3b9bcSJacob Faibussowitsch         if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]]));
176073d901b8SMatthew G. Knepley       }
17619566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
1762083401c6SMatthew G. Knepley     }
1763083401c6SMatthew G. Knepley     if (label) {
17649566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
17659566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
1766083401c6SMatthew G. Knepley     }
17679566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
17689566063dSJacob Faibussowitsch     PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
176973d901b8SMatthew G. Knepley   }
17709566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
1771835f2295SStefano Zampini   PetscCall(PetscMPIIntCast(Nf, &Nfi));
1772835f2295SStefano Zampini   PetscCallMPI(MPIU_Allreduce(localDiff, diff, Nfi, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
17739566063dSJacob Faibussowitsch   PetscCall(PetscFree(localDiff));
1774083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]);
17753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
177673d901b8SMatthew G. Knepley }
177773d901b8SMatthew G. Knepley 
1778e729f68cSMatthew G. Knepley /*@C
1779e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
1780e729f68cSMatthew G. Knepley 
178120f4b53cSBarry Smith   Collective
1782c0f8e1fdSMatthew G. Knepley 
1783e729f68cSMatthew G. Knepley   Input Parameters:
1784a1cb98faSBarry Smith + dm    - The `DM`
17850163fd50SMatthew G. Knepley . time  - The time
178620f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation
178720f4b53cSBarry Smith . ctxs  - Optional array of contexts to pass to each function, or `NULL`.
1788e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
1789e729f68cSMatthew G. Knepley 
1790e729f68cSMatthew G. Knepley   Output Parameter:
179120f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell
1792e729f68cSMatthew G. Knepley 
1793e729f68cSMatthew G. Knepley   Level: developer
1794e729f68cSMatthew G. Knepley 
17951cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1796e729f68cSMatthew G. Knepley @*/
1797d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
1798d71ae5a4SJacob Faibussowitsch {
1799e729f68cSMatthew G. Knepley   PetscSection     section;
1800e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
1801e729f68cSMatthew G. Knepley   Vec              localX;
18024bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
1803e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
18044bee2e38SMatthew G. Knepley   PetscReal       *coords;
1805e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1806485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset;
1807e729f68cSMatthew G. Knepley 
1808e729f68cSMatthew G. Knepley   PetscFunctionBegin;
18099566063dSJacob Faibussowitsch   PetscCall(VecSet(D, 0.0));
18109566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
18119566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
18129566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
18139566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
18149566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
18159566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
18169566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
18179566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
1818e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
1819e729f68cSMatthew G. Knepley     PetscObject  obj;
1820e729f68cSMatthew G. Knepley     PetscClassId id;
1821e729f68cSMatthew G. Knepley     PetscInt     Nc;
1822e729f68cSMatthew G. Knepley 
18239566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
18249566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1825e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1826e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
1827e729f68cSMatthew G. Knepley 
18289566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
18299566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
1830e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1831e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
1832e729f68cSMatthew G. Knepley 
18339566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
18349566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
183563a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1836e729f68cSMatthew G. Knepley     numComponents += Nc;
1837e729f68cSMatthew G. Knepley   }
18389566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
183963a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
18409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
18419566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1842e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1843e729f68cSMatthew G. Knepley     PetscScalar *x        = NULL;
18446f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
18459c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1846e729f68cSMatthew G. Knepley 
18479566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1848e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
1849e729f68cSMatthew G. Knepley 
1850e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
1851e729f68cSMatthew G. Knepley       PetscObject  obj;
1852e729f68cSMatthew G. Knepley       PetscClassId id;
1853e729f68cSMatthew G. Knepley       void *const  ctx = ctxs ? ctxs[field] : NULL;
1854e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1855e729f68cSMatthew G. Knepley 
18569566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
18579566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
18589371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
18599371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
18609371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
18619371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
18629371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
18639371c9d4SSatish Balay         Nb = 1;
18649371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
186523f34ed2SToby Isaac       if (funcs[field]) {
18667318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
18672a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
18682a4e142eSMatthew G. Knepley 
18692a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
18702a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
18712a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
18722a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
187363a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
18749566063dSJacob Faibussowitsch           PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx));
1875c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument)
1876e735a8a9SMatthew G. Knepley           if (ierr) {
18779566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
18789566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18799566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
1880e735a8a9SMatthew G. Knepley           }
1881c3e24edfSBarry Smith #endif
18829566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
18839566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
188463a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1885e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1886beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
18874bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1888e729f68cSMatthew G. Knepley           }
1889e729f68cSMatthew G. Knepley         }
189023f34ed2SToby Isaac       }
1891beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
18929c3cf19fSMatthew G. Knepley       qc += Nc;
1893e729f68cSMatthew G. Knepley     }
18949566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
18959566063dSJacob Faibussowitsch     PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES));
1896e729f68cSMatthew G. Knepley   }
18979566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18989566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
18999566063dSJacob Faibussowitsch   PetscCall(VecSqrtAbs(D));
19003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1901e729f68cSMatthew G. Knepley }
1902e729f68cSMatthew G. Knepley 
19035f0b18bfSMatthew G. Knepley /*@
19042353bfffSMatthew G. Knepley   DMPlexComputeL2FluxDiffVecLocal - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu`
19052353bfffSMatthew G. Knepley 
19062353bfffSMatthew G. Knepley   Collective
19072353bfffSMatthew G. Knepley 
19082353bfffSMatthew G. Knepley   Input Parameters:
19092353bfffSMatthew G. Knepley + lu  - The local `Vec` containing the primal solution
19102353bfffSMatthew G. Knepley . f   - The field number for the potential
19112353bfffSMatthew G. Knepley . lmu - The local `Vec` containing the mixed solution
19122353bfffSMatthew G. Knepley - mf  - The field number for the flux
19132353bfffSMatthew G. Knepley 
19142353bfffSMatthew G. Knepley   Output Parameter:
19152353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$
19162353bfffSMatthew G. Knepley 
19172353bfffSMatthew G. Knepley   Level: advanced
19182353bfffSMatthew G. Knepley 
19192353bfffSMatthew G. Knepley   Notes:
19202353bfffSMatthew G. Knepley   We assume that the `DM` for each solution has the same topology, geometry, and quadrature.
19212353bfffSMatthew G. Knepley 
19222353bfffSMatthew G. Knepley   This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution.
19232353bfffSMatthew G. Knepley 
19242353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVec()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
19252353bfffSMatthew G. Knepley @*/
19262353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVecLocal(Vec lu, PetscInt f, Vec lmu, PetscInt mf, Vec eFlux)
19272353bfffSMatthew G. Knepley {
19282353bfffSMatthew G. Knepley   DM               dm, mdm, edm;
19292353bfffSMatthew G. Knepley   PetscFE          fe, mfe;
19302353bfffSMatthew G. Knepley   PetscFEGeom      fegeom;
19312353bfffSMatthew G. Knepley   PetscQuadrature  quad;
19322353bfffSMatthew G. Knepley   const PetscReal *quadWeights;
19332353bfffSMatthew G. Knepley   PetscReal       *coords;
19342353bfffSMatthew G. Knepley   PetscScalar     *interpolant, *minterpolant, *earray;
19352353bfffSMatthew G. Knepley   PetscInt         cdim, mcdim, cStart, cEnd, Nc, mNc, qNc, Nq;
19362353bfffSMatthew G. Knepley   MPI_Comm         comm;
19372353bfffSMatthew G. Knepley 
19382353bfffSMatthew G. Knepley   PetscFunctionBegin;
19392353bfffSMatthew G. Knepley   PetscCall(VecGetDM(lu, &dm));
19402353bfffSMatthew G. Knepley   PetscCall(VecGetDM(lmu, &mdm));
19412353bfffSMatthew G. Knepley   PetscCall(VecGetDM(eFlux, &edm));
19422353bfffSMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
19432353bfffSMatthew G. Knepley   PetscCall(VecSet(eFlux, 0.0));
19442353bfffSMatthew G. Knepley 
19452353bfffSMatthew G. Knepley   // Check if the both problems are on the same mesh
19462353bfffSMatthew G. Knepley   PetscCall(DMGetCoordinateDim(dm, &cdim));
19472353bfffSMatthew G. Knepley   PetscCall(DMGetCoordinateDim(mdm, &mcdim));
19482353bfffSMatthew G. Knepley   PetscCheck(cdim == mcdim, comm, PETSC_ERR_ARG_SIZ, "primal coordinate Dim %" PetscInt_FMT " != %" PetscInt_FMT " mixed coordinate Dim", cdim, mcdim);
19492353bfffSMatthew G. Knepley   fegeom.dimEmbed = cdim;
19502353bfffSMatthew G. Knepley 
19512353bfffSMatthew G. Knepley   PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
19522353bfffSMatthew G. Knepley   PetscCall(DMGetField(mdm, mf, NULL, (PetscObject *)&mfe));
19532353bfffSMatthew G. Knepley   PetscCall(PetscFEGetNumComponents(fe, &Nc));
19542353bfffSMatthew G. Knepley   PetscCall(PetscFEGetNumComponents(mfe, &mNc));
19552353bfffSMatthew G. Knepley   PetscCall(PetscFEGetQuadrature(fe, &quad));
19562353bfffSMatthew G. Knepley   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
19572353bfffSMatthew G. Knepley   PetscCheck(qNc == 1 || qNc == mNc, comm, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, mNc);
19582353bfffSMatthew G. Knepley 
19592353bfffSMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
19602353bfffSMatthew G. Knepley   PetscCall(VecGetArrayWrite(eFlux, &earray));
19612353bfffSMatthew G. Knepley   PetscCall(PetscMalloc6(Nc * cdim, &interpolant, mNc * cdim, &minterpolant, cdim * (Nq + 1), &coords, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ, Nq, &fegeom.detJ));
19622353bfffSMatthew G. Knepley   for (PetscInt c = cStart; c < cEnd; ++c) {
19632353bfffSMatthew G. Knepley     PetscScalar *x            = NULL;
19642353bfffSMatthew G. Knepley     PetscScalar *mx           = NULL;
19652353bfffSMatthew G. Knepley     PetscScalar *eval         = NULL;
19662353bfffSMatthew G. Knepley     PetscReal    fluxElemDiff = 0.0;
19672353bfffSMatthew G. Knepley 
19682353bfffSMatthew G. Knepley     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
19692353bfffSMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(dm, NULL, lu, c, NULL, &x));
19702353bfffSMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(mdm, NULL, lmu, c, NULL, &mx));
19712353bfffSMatthew G. Knepley 
19722353bfffSMatthew G. Knepley     for (PetscInt q = 0; q < Nq; ++q) {
19732353bfffSMatthew G. Knepley       PetscFEGeom qgeom;
19742353bfffSMatthew G. Knepley 
19752353bfffSMatthew G. Knepley       qgeom.dimEmbed = fegeom.dimEmbed;
19762353bfffSMatthew G. Knepley       qgeom.J        = &fegeom.J[q * cdim * cdim];
19772353bfffSMatthew G. Knepley       qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
19782353bfffSMatthew G. Knepley       qgeom.detJ     = &fegeom.detJ[q];
19792353bfffSMatthew G. Knepley 
19802353bfffSMatthew G. Knepley       PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
19812353bfffSMatthew G. Knepley 
19822353bfffSMatthew G. Knepley       PetscCall(PetscFEInterpolate_Static(mfe, &mx[0], &qgeom, q, minterpolant));
19832353bfffSMatthew G. Knepley       PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[0], &qgeom, q, interpolant));
19842353bfffSMatthew G. Knepley 
19852353bfffSMatthew G. Knepley       /* Now take the elementwise difference and store that in a vector. */
19862353bfffSMatthew G. Knepley       for (PetscInt fc = 0; fc < mNc; ++fc) {
19872353bfffSMatthew G. Knepley         const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : fc)];
19882353bfffSMatthew G. Knepley         fluxElemDiff += PetscSqr(PetscRealPart(interpolant[fc] - minterpolant[fc])) * wt * fegeom.detJ[q];
19892353bfffSMatthew G. Knepley       }
19902353bfffSMatthew G. Knepley     }
19912353bfffSMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(dm, NULL, lu, c, NULL, &x));
19922353bfffSMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(mdm, NULL, lmu, c, NULL, &mx));
19932353bfffSMatthew G. Knepley     PetscCall(DMPlexPointGlobalRef(edm, c, earray, (void *)&eval));
19942353bfffSMatthew G. Knepley     if (eval) eval[0] = fluxElemDiff;
19952353bfffSMatthew G. Knepley   }
19962353bfffSMatthew G. Knepley   PetscCall(PetscFree6(interpolant, minterpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
19972353bfffSMatthew G. Knepley   PetscCall(VecRestoreArrayWrite(eFlux, &earray));
19982353bfffSMatthew G. Knepley 
19992353bfffSMatthew G. Knepley   PetscCall(VecAssemblyBegin(eFlux));
20002353bfffSMatthew G. Knepley   PetscCall(VecAssemblyEnd(eFlux));
20012353bfffSMatthew G. Knepley   PetscCall(VecSqrtAbs(eFlux));
20022353bfffSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
20032353bfffSMatthew G. Knepley }
20042353bfffSMatthew G. Knepley 
20052353bfffSMatthew G. Knepley /*@
20062353bfffSMatthew G. Knepley   DMPlexComputeL2FluxDiffVec - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu`
20072353bfffSMatthew G. Knepley 
20082353bfffSMatthew G. Knepley   Collective
20092353bfffSMatthew G. Knepley 
20102353bfffSMatthew G. Knepley   Input Parameters:
20112353bfffSMatthew G. Knepley + u  - The global `Vec` containing the primal solution
20122353bfffSMatthew G. Knepley . f  - The field number for the potential
20132353bfffSMatthew G. Knepley . mu - The global `Vec` containing the mixed solution
20142353bfffSMatthew G. Knepley - mf - The field number for the flux
20152353bfffSMatthew G. Knepley 
20162353bfffSMatthew G. Knepley   Output Parameter:
20172353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$
20182353bfffSMatthew G. Knepley 
20192353bfffSMatthew G. Knepley   Level: advanced
20202353bfffSMatthew G. Knepley 
20212353bfffSMatthew G. Knepley   Notes:
20222353bfffSMatthew G. Knepley   We assume that the `DM` for each solution has the same topology, geometry, and quadrature.
20232353bfffSMatthew G. Knepley 
20242353bfffSMatthew G. Knepley   This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution.
20252353bfffSMatthew G. Knepley 
20262353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVecLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
20272353bfffSMatthew G. Knepley @*/
20282353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVec(Vec u, PetscInt f, Vec mu, PetscInt mf, Vec eFlux)
20292353bfffSMatthew G. Knepley {
20302353bfffSMatthew G. Knepley   DM  dm, mdm;
20312353bfffSMatthew G. Knepley   Vec lu, lmu;
20322353bfffSMatthew G. Knepley 
20332353bfffSMatthew G. Knepley   PetscFunctionBegin;
20342353bfffSMatthew G. Knepley   PetscCall(VecGetDM(u, &dm));
20352353bfffSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &lu));
20362353bfffSMatthew G. Knepley   PetscCall(DMGlobalToLocal(dm, u, INSERT_VALUES, lu));
20372353bfffSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, lu, 0.0, NULL, NULL, NULL));
20382353bfffSMatthew G. Knepley 
20392353bfffSMatthew G. Knepley   PetscCall(VecGetDM(mu, &mdm));
20402353bfffSMatthew G. Knepley   PetscCall(DMGetLocalVector(mdm, &lmu));
20412353bfffSMatthew G. Knepley   PetscCall(DMGlobalToLocal(mdm, mu, INSERT_VALUES, lmu));
20422353bfffSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(mdm, PETSC_TRUE, lmu, 0.0, NULL, NULL, NULL));
20432353bfffSMatthew G. Knepley 
20442353bfffSMatthew G. Knepley   PetscCall(DMPlexComputeL2FluxDiffVecLocal(lu, f, lmu, mf, eFlux));
20452353bfffSMatthew G. Knepley 
20462353bfffSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &lu));
20472353bfffSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(mdm, &lmu));
20482353bfffSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
20492353bfffSMatthew G. Knepley }
20502353bfffSMatthew G. Knepley 
20512353bfffSMatthew G. Knepley /*@
205220f4b53cSBarry Smith   DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1
20535f0b18bfSMatthew G. Knepley 
205420f4b53cSBarry Smith   Collective
20555f0b18bfSMatthew G. Knepley 
20565f0b18bfSMatthew G. Knepley   Input Parameters:
2057a1cb98faSBarry Smith + dm   - The `DM`
20585f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
20595f0b18bfSMatthew G. Knepley 
20605f0b18bfSMatthew G. Knepley   Output Parameter:
2061a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function
20625f0b18bfSMatthew G. Knepley 
20635f0b18bfSMatthew G. Knepley   Level: developer
20645f0b18bfSMatthew G. Knepley 
2065a1cb98faSBarry Smith   Note:
2066a1cb98faSBarry Smith   $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
2067a1cb98faSBarry Smith 
20681cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
20695f0b18bfSMatthew G. Knepley @*/
2070d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC)
2071d71ae5a4SJacob Faibussowitsch {
20725f0b18bfSMatthew G. Knepley   PetscInt         debug = ((DM_Plex *)dm->data)->printFEM;
20735f0b18bfSMatthew G. Knepley   DM               dmc;
20745f0b18bfSMatthew G. Knepley   PetscQuadrature  quad;
20755f0b18bfSMatthew G. Knepley   PetscScalar     *interpolant, *valsum;
20765f0b18bfSMatthew G. Knepley   PetscFEGeom      fegeom;
20775f0b18bfSMatthew G. Knepley   PetscReal       *coords;
20785f0b18bfSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
20795f0b18bfSMatthew G. Knepley   PetscInt         dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v;
20805f0b18bfSMatthew G. Knepley 
20815f0b18bfSMatthew G. Knepley   PetscFunctionBegin;
20829566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
20839566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmc));
20849566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
20859566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
20869566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
20875f0b18bfSMatthew G. Knepley   fegeom.dimEmbed = cdim;
20889566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
20895f0b18bfSMatthew G. Knepley   PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
20905f0b18bfSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
20915f0b18bfSMatthew G. Knepley     PetscObject  obj;
20925f0b18bfSMatthew G. Knepley     PetscClassId id;
20935f0b18bfSMatthew G. Knepley     PetscInt     fNc;
20945f0b18bfSMatthew G. Knepley 
20959566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, NULL, &obj));
20969566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
20975f0b18bfSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
20985f0b18bfSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
20995f0b18bfSMatthew G. Knepley 
21009566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
21019566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &fNc));
21025f0b18bfSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
21035f0b18bfSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
21045f0b18bfSMatthew G. Knepley 
21059566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
21069566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &fNc));
210763a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
21085f0b18bfSMatthew G. Knepley     Nc += fNc;
21095f0b18bfSMatthew G. Knepley   }
21109566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
211163a3b9bcSJacob Faibussowitsch   PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc);
21129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ));
21139566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
21149566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
21155f0b18bfSMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
21165f0b18bfSMatthew G. Knepley     PetscScalar volsum = 0.0;
21175f0b18bfSMatthew G. Knepley     PetscInt   *star   = NULL;
21185f0b18bfSMatthew G. Knepley     PetscInt    starSize, st, fc;
21195f0b18bfSMatthew G. Knepley 
21209566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(valsum, Nc));
21219566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
21225f0b18bfSMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
21235f0b18bfSMatthew G. Knepley       const PetscInt cell = star[st];
21245f0b18bfSMatthew G. Knepley       PetscScalar   *val  = &valsum[Nc];
21255f0b18bfSMatthew G. Knepley       PetscScalar   *x    = NULL;
21265f0b18bfSMatthew G. Knepley       PetscReal      vol  = 0.0;
21275f0b18bfSMatthew G. Knepley       PetscInt       foff = 0;
21285f0b18bfSMatthew G. Knepley 
21295f0b18bfSMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
21309566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
21319566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
21325f0b18bfSMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
21335f0b18bfSMatthew G. Knepley         PetscObject  obj;
21345f0b18bfSMatthew G. Knepley         PetscClassId id;
21355f0b18bfSMatthew G. Knepley         PetscInt     Nb, fNc, q;
21365f0b18bfSMatthew G. Knepley 
21379566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(val, Nc));
21389566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, f, NULL, &obj));
21399566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
21409371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
21419371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc));
21429371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
21439371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
21449371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc));
21459371c9d4SSatish Balay           Nb = 1;
21469371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
21475f0b18bfSMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
21485f0b18bfSMatthew G. Knepley           const PetscReal wt = quadWeights[q] * fegeom.detJ[q];
21495f0b18bfSMatthew G. Knepley           PetscFEGeom     qgeom;
21505f0b18bfSMatthew G. Knepley 
21515f0b18bfSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
21525f0b18bfSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * cdim * cdim];
21535f0b18bfSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
21545f0b18bfSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
215563a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
21569566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant));
215763a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
21585f0b18bfSMatthew G. Knepley           for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt;
21595f0b18bfSMatthew G. Knepley           vol += wt;
21605f0b18bfSMatthew G. Knepley         }
21615f0b18bfSMatthew G. Knepley         foff += Nb;
21625f0b18bfSMatthew G. Knepley       }
21639566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
21645f0b18bfSMatthew G. Knepley       for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc];
21655f0b18bfSMatthew G. Knepley       volsum += vol;
21665f0b18bfSMatthew G. Knepley       if (debug) {
21679566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell));
21685f0b18bfSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
21699566063dSJacob Faibussowitsch           if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
21709566063dSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc])));
21715f0b18bfSMatthew G. Knepley         }
21729566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
21735f0b18bfSMatthew G. Knepley       }
21745f0b18bfSMatthew G. Knepley     }
21755f0b18bfSMatthew G. Knepley     for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum;
21769566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
21779566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES));
21785f0b18bfSMatthew G. Knepley   }
21799566063dSJacob Faibussowitsch   PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
21803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21815f0b18bfSMatthew G. Knepley }
21825f0b18bfSMatthew G. Knepley 
21835f0b18bfSMatthew G. Knepley /*@
218420f4b53cSBarry Smith   DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1
21851555c271SMatthew G. Knepley 
218620f4b53cSBarry Smith   Collective
2187c0f8e1fdSMatthew G. Knepley 
21881555c271SMatthew G. Knepley   Input Parameters:
2189a1cb98faSBarry Smith + dm   - The `DM`
21905f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
21911555c271SMatthew G. Knepley 
21921555c271SMatthew G. Knepley   Output Parameter:
2193a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient
21941555c271SMatthew G. Knepley 
21951555c271SMatthew G. Knepley   Level: developer
21961555c271SMatthew G. Knepley 
2197a1cb98faSBarry Smith   Note:
2198a1cb98faSBarry Smith   $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
2199a1cb98faSBarry Smith 
22001cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
22011555c271SMatthew G. Knepley @*/
2202d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC)
2203d71ae5a4SJacob Faibussowitsch {
2204db1066baSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *)dm->data;
2205db1066baSMatthew G. Knepley   PetscInt         debug = mesh->printFEM;
22061555c271SMatthew G. Knepley   DM               dmC;
22071555c271SMatthew G. Knepley   PetscQuadrature  quad;
22081555c271SMatthew G. Knepley   PetscScalar     *interpolant, *gradsum;
22094bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
22104bee2e38SMatthew G. Knepley   PetscReal       *coords;
22111555c271SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
2212485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset;
22131555c271SMatthew G. Knepley 
22141555c271SMatthew G. Knepley   PetscFunctionBegin;
22159566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
22169566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmC));
22179566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
22189566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
22199566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
22204bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
22219566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
22225f80ce2aSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
22231555c271SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
22241555c271SMatthew G. Knepley     PetscObject  obj;
22251555c271SMatthew G. Knepley     PetscClassId id;
22261555c271SMatthew G. Knepley     PetscInt     Nc;
22271555c271SMatthew G. Knepley 
22289566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
22299566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
22301555c271SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
22311555c271SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
22321555c271SMatthew G. Knepley 
22339566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
22349566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
22351555c271SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
22361555c271SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
22371555c271SMatthew G. Knepley 
22389566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
22399566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
224063a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
22411555c271SMatthew G. Knepley     numComponents += Nc;
22421555c271SMatthew G. Knepley   }
22439566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
224463a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
22459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
22469566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
22479566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
22481555c271SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
22491555c271SMatthew G. Knepley     PetscScalar volsum = 0.0;
22501555c271SMatthew G. Knepley     PetscInt   *star   = NULL;
22511555c271SMatthew G. Knepley     PetscInt    starSize, st, d, fc;
22521555c271SMatthew G. Knepley 
22539566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(gradsum, coordDim * numComponents));
22549566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
22551555c271SMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
22561555c271SMatthew G. Knepley       const PetscInt cell = star[st];
22571555c271SMatthew G. Knepley       PetscScalar   *grad = &gradsum[coordDim * numComponents];
22581555c271SMatthew G. Knepley       PetscScalar   *x    = NULL;
22591555c271SMatthew G. Knepley       PetscReal      vol  = 0.0;
22601555c271SMatthew G. Knepley 
22611555c271SMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
22629566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
22639566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
22641555c271SMatthew G. Knepley       for (field = 0, fieldOffset = 0; field < numFields; ++field) {
22651555c271SMatthew G. Knepley         PetscObject  obj;
22661555c271SMatthew G. Knepley         PetscClassId id;
22671555c271SMatthew G. Knepley         PetscInt     Nb, Nc, q, qc = 0;
22681555c271SMatthew G. Knepley 
22699566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(grad, coordDim * numComponents));
22709566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, field, NULL, &obj));
22719566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
22729371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
22739371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
22749371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
22759371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
22769371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
22779371c9d4SSatish Balay           Nb = 1;
22789371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
22791555c271SMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
22802a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
22812a4e142eSMatthew G. Knepley 
22822a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
22832a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
22842a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
22852a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
228663a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
22879566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant));
228863a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
22891555c271SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
229053d2db2dSJoe Wallwork             const PetscReal wt = quadWeights[q * qNc + qc];
22911555c271SMatthew G. Knepley 
22924bee2e38SMatthew G. Knepley             for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q];
22931555c271SMatthew G. Knepley           }
22944bee2e38SMatthew G. Knepley           vol += quadWeights[q * qNc] * fegeom.detJ[q];
22951555c271SMatthew G. Knepley         }
22961555c271SMatthew G. Knepley         fieldOffset += Nb;
22971555c271SMatthew G. Knepley         qc += Nc;
22981555c271SMatthew G. Knepley       }
22999566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
2300f8527842SMatthew G. Knepley       for (fc = 0; fc < numComponents; ++fc) {
2301ad540459SPierre Jolivet         for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d];
2302f8527842SMatthew G. Knepley       }
2303f8527842SMatthew G. Knepley       volsum += vol;
2304db1066baSMatthew G. Knepley       if (debug) {
23059566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell));
23061555c271SMatthew G. Knepley         for (fc = 0; fc < numComponents; ++fc) {
23071555c271SMatthew G. Knepley           for (d = 0; d < coordDim; ++d) {
23089566063dSJacob Faibussowitsch             if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
23099566063dSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d])));
23101555c271SMatthew G. Knepley           }
23111555c271SMatthew G. Knepley         }
23129566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
2313db1066baSMatthew G. Knepley       }
23141555c271SMatthew G. Knepley     }
23151555c271SMatthew G. Knepley     for (fc = 0; fc < numComponents; ++fc) {
23161555c271SMatthew G. Knepley       for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum;
23171555c271SMatthew G. Knepley     }
23189566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
23199566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES));
23201555c271SMatthew G. Knepley   }
23219566063dSJacob Faibussowitsch   PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
23223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23231555c271SMatthew G. Knepley }
23241555c271SMatthew G. Knepley 
23256493148fSStefano Zampini PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec locX, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user)
2326d71ae5a4SJacob Faibussowitsch {
2327cbf8eb3cSStefano Zampini   DM           dmAux = NULL, plexA = NULL;
232861aaff12SToby Isaac   PetscDS      prob, probAux       = NULL;
232973d901b8SMatthew G. Knepley   PetscSection section, sectionAux;
23306493148fSStefano Zampini   Vec          locA;
2331c330f8ffSToby Isaac   PetscInt     dim, numCells = cEnd - cStart, c, f;
2332c330f8ffSToby Isaac   PetscBool    useFVM = PETSC_FALSE;
2333338f77d5SMatthew G. Knepley   /* DS */
2334338f77d5SMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x, numConstants;
2335338f77d5SMatthew G. Knepley   PetscInt           NfAux, totDimAux, *aOff;
23368e3a54c0SPierre Jolivet   PetscScalar       *u, *a = NULL;
2337338f77d5SMatthew G. Knepley   const PetscScalar *constants;
2338338f77d5SMatthew G. Knepley   /* Geometry */
2339c330f8ffSToby Isaac   PetscFEGeom       *cgeomFEM;
2340338f77d5SMatthew G. Knepley   DM                 dmGrad;
2341c330f8ffSToby Isaac   PetscQuadrature    affineQuad      = NULL;
2342338f77d5SMatthew G. Knepley   Vec                cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
2343b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
2344338f77d5SMatthew G. Knepley   const PetscScalar *lgrad;
2345b7260050SToby Isaac   PetscInt           maxDegree;
2346c330f8ffSToby Isaac   DMField            coordField;
2347c330f8ffSToby Isaac   IS                 cellIS;
234873d901b8SMatthew G. Knepley 
234973d901b8SMatthew G. Knepley   PetscFunctionBegin;
23509566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
23519566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
23529566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
23539566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
2354338f77d5SMatthew G. Knepley   /* Determine which discretizations we have */
2355b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2356b5a3613cSMatthew G. Knepley     PetscObject  obj;
2357b5a3613cSMatthew G. Knepley     PetscClassId id;
2358b5a3613cSMatthew G. Knepley 
23599566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
23609566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2361338f77d5SMatthew G. Knepley     if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE;
2362338f77d5SMatthew G. Knepley   }
2363338f77d5SMatthew G. Knepley   /* Read DS information */
23649566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
23659566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
23669566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
23679566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS));
23689566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
2369338f77d5SMatthew G. Knepley   /* Read Auxiliary DS information */
23709566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
23719a2a23afSMatthew G. Knepley   if (locA) {
23729566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
2373cbf8eb3cSStefano Zampini     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
23749566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
23759566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
23769566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
23779566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
23789566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
2379338f77d5SMatthew G. Knepley   }
2380338f77d5SMatthew G. Knepley   /* Allocate data  arrays */
23819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(numCells * totDim, &u));
23829566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
2383338f77d5SMatthew G. Knepley   /* Read out geometry */
23849566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
23859566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
2386b7260050SToby Isaac   if (maxDegree <= 1) {
23879566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
238848a46eb9SPierre Jolivet     if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM));
2389b5a3613cSMatthew G. Knepley   }
2390b5a3613cSMatthew G. Knepley   if (useFVM) {
2391338f77d5SMatthew G. Knepley     PetscFV   fv = NULL;
2392b5a3613cSMatthew G. Knepley     Vec       grad;
2393b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
2394b5a3613cSMatthew G. Knepley     PetscBool compGrad;
2395b5a3613cSMatthew G. Knepley 
2396338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
2397338f77d5SMatthew G. Knepley       PetscObject  obj;
2398338f77d5SMatthew G. Knepley       PetscClassId id;
2399338f77d5SMatthew G. Knepley 
24009566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
24019566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
24029371c9d4SSatish Balay       if (id == PETSCFV_CLASSID) {
24039371c9d4SSatish Balay         fv = (PetscFV)obj;
24049371c9d4SSatish Balay         break;
24059371c9d4SSatish Balay       }
2406338f77d5SMatthew G. Knepley     }
24079566063dSJacob Faibussowitsch     PetscCall(PetscFVGetComputeGradients(fv, &compGrad));
24089566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE));
24099566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM));
24109566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad));
24119566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, compGrad));
24129566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
2413b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
24149566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
24159566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmGrad, &grad));
24169566063dSJacob Faibussowitsch     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
2417b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
24189566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
24199566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
24209566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
24219566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
2422b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
24239566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad));
24249566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
2425b5a3613cSMatthew G. Knepley   }
2426338f77d5SMatthew G. Knepley   /* Read out data from inputs */
242773d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
242873d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
242973d901b8SMatthew G. Knepley     PetscInt     i;
243073d901b8SMatthew G. Knepley 
24319566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x));
24320f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
24339566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x));
243473d901b8SMatthew G. Knepley     if (dmAux) {
2435cbf8eb3cSStefano Zampini       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, c, NULL, &x));
24360f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
2437cbf8eb3cSStefano Zampini       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, c, NULL, &x));
243873d901b8SMatthew G. Knepley     }
243973d901b8SMatthew G. Knepley   }
2440338f77d5SMatthew G. Knepley   /* Do integration for each field */
244173d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2442c1f031eeSMatthew G. Knepley     PetscObject  obj;
2443c1f031eeSMatthew G. Knepley     PetscClassId id;
2444c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
244573d901b8SMatthew G. Knepley 
24469566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
24479566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2448c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
2449c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE)obj;
2450c1f031eeSMatthew G. Knepley       PetscQuadrature q;
2451c330f8ffSToby Isaac       PetscFEGeom    *chunkGeom = NULL;
2452c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
2453c1f031eeSMatthew G. Knepley 
24549566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
24559566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
24569566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
24579566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
2458c1f031eeSMatthew G. Knepley       blockSize = Nb * Nq;
245973d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
24609566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
246173d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
246273d901b8SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
246373d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
246473d901b8SMatthew G. Knepley       offset    = numCells - Nr;
246548a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM));
24669566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
24679566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral));
24689566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom));
24698e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &cintegral[offset * Nf]));
24709566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom));
247148a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
2472c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
2473c1f031eeSMatthew G. Knepley       PetscInt       foff;
2474420e96edSMatthew G. Knepley       PetscPointFunc obj_func;
2475c1f031eeSMatthew G. Knepley 
24769566063dSJacob Faibussowitsch       PetscCall(PetscDSGetObjective(prob, f, &obj_func));
24779566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, f, &foff));
2478c1f031eeSMatthew G. Knepley       if (obj_func) {
2479c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
2480b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
2481d627b919SMatthew G. Knepley           PetscScalar  lint = 0.;
2482b5a3613cSMatthew G. Knepley 
24839566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x));
248455bffe1bSPierre Jolivet           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, PetscSafePointerPlusOffset(a, totDimAux * c), NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint);
2485338f77d5SMatthew G. Knepley           cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume;
248673d901b8SMatthew G. Knepley         }
2487c1f031eeSMatthew G. Knepley       }
248863a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
2489c1f031eeSMatthew G. Knepley   }
2490338f77d5SMatthew G. Knepley   /* Cleanup data arrays */
2491b5a3613cSMatthew G. Knepley   if (useFVM) {
24929566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
24939566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
24949566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
24959566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&faceGeometryFVM));
24969566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cellGeometryFVM));
24979566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&dmGrad));
2498b5a3613cSMatthew G. Knepley   }
24999566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscFree(a));
2500cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&plexA));
25019566063dSJacob Faibussowitsch   PetscCall(PetscFree(u));
2502338f77d5SMatthew G. Knepley   /* Cleanup */
250348a46eb9SPierre Jolivet   if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
25049566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&affineQuad));
25059566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
25063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2507338f77d5SMatthew G. Knepley }
2508338f77d5SMatthew G. Knepley 
2509338f77d5SMatthew G. Knepley /*@
2510338f77d5SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user
2511338f77d5SMatthew G. Knepley 
2512338f77d5SMatthew G. Knepley   Input Parameters:
2513338f77d5SMatthew G. Knepley + dm   - The mesh
2514338f77d5SMatthew G. Knepley . X    - Global input vector
2515338f77d5SMatthew G. Knepley - user - The user context
2516338f77d5SMatthew G. Knepley 
2517338f77d5SMatthew G. Knepley   Output Parameter:
2518338f77d5SMatthew G. Knepley . integral - Integral for each field
2519338f77d5SMatthew G. Knepley 
2520338f77d5SMatthew G. Knepley   Level: developer
2521338f77d5SMatthew G. Knepley 
25221cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2523338f77d5SMatthew G. Knepley @*/
2524d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user)
2525d71ae5a4SJacob Faibussowitsch {
2526cbf8eb3cSStefano Zampini   PetscInt     printFEM;
2527b8feb594SMatthew G. Knepley   PetscScalar *cintegral, *lintegral;
2528412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
25296493148fSStefano Zampini   Vec          locX;
2530835f2295SStefano Zampini   PetscMPIInt  Nfi;
2531338f77d5SMatthew G. Knepley 
2532338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2533338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2534338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
25354f572ea9SToby Isaac   PetscAssertPointer(integral, 3);
25369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2537cbf8eb3cSStefano Zampini   PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE));
25389566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
25399566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
25409566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2541338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
25429566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral));
25436493148fSStefano Zampini   /* Get local solution with boundary values */
25446493148fSStefano Zampini   PetscCall(DMGetLocalVector(dm, &locX));
25456493148fSStefano Zampini   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
25466493148fSStefano Zampini   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
25476493148fSStefano Zampini   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
25486493148fSStefano Zampini   PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user));
25496493148fSStefano Zampini   PetscCall(DMRestoreLocalVector(dm, &locX));
2550cbf8eb3cSStefano Zampini   printFEM = ((DM_Plex *)dm->data)->printFEM;
2551338f77d5SMatthew G. Knepley   /* Sum up values */
2552338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2553338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2554338f77d5SMatthew G. Knepley 
2555cbf8eb3cSStefano Zampini     if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
2556b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f];
2557338f77d5SMatthew G. Knepley   }
2558835f2295SStefano Zampini   PetscCall(PetscMPIIntCast(Nf, &Nfi));
2559835f2295SStefano Zampini   PetscCallMPI(MPIU_Allreduce(lintegral, integral, Nfi, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
2560cbf8eb3cSStefano Zampini   if (printFEM) {
25619566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:"));
25629566063dSJacob Faibussowitsch     for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f])));
25639566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n"));
256473d901b8SMatthew G. Knepley   }
25659566063dSJacob Faibussowitsch   PetscCall(PetscFree2(lintegral, cintegral));
25669566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2567cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&dm));
25683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2569338f77d5SMatthew G. Knepley }
2570338f77d5SMatthew G. Knepley 
2571338f77d5SMatthew G. Knepley /*@
2572338f77d5SMatthew G. Knepley   DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user
2573338f77d5SMatthew G. Knepley 
2574338f77d5SMatthew G. Knepley   Input Parameters:
2575338f77d5SMatthew G. Knepley + dm   - The mesh
2576338f77d5SMatthew G. Knepley . X    - Global input vector
2577338f77d5SMatthew G. Knepley - user - The user context
2578338f77d5SMatthew G. Knepley 
2579338f77d5SMatthew G. Knepley   Output Parameter:
258060225df5SJacob Faibussowitsch . F - Cellwise integrals for each field
2581338f77d5SMatthew G. Knepley 
2582338f77d5SMatthew G. Knepley   Level: developer
2583338f77d5SMatthew G. Knepley 
25841cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2585338f77d5SMatthew G. Knepley @*/
2586d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user)
2587d71ae5a4SJacob Faibussowitsch {
2588cbf8eb3cSStefano Zampini   PetscInt     printFEM;
2589338f77d5SMatthew G. Knepley   DM           dmF;
25909c8ab049SStefano Zampini   PetscSection sectionF = NULL;
2591338f77d5SMatthew G. Knepley   PetscScalar *cintegral, *af;
25929c8ab049SStefano Zampini   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell, n;
25936493148fSStefano Zampini   Vec          locX;
2594338f77d5SMatthew G. Knepley 
2595338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2596338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2597338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2598338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(F, VEC_CLASSID, 3);
25999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2600cbf8eb3cSStefano Zampini   PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE));
26019566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
26029566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
26039566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2604338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
26059566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral));
26066493148fSStefano Zampini   /* Get local solution with boundary values */
26076493148fSStefano Zampini   PetscCall(DMGetLocalVector(dm, &locX));
26086493148fSStefano Zampini   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
26096493148fSStefano Zampini   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
26106493148fSStefano Zampini   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
26116493148fSStefano Zampini   PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user));
26126493148fSStefano Zampini   PetscCall(DMRestoreLocalVector(dm, &locX));
2613338f77d5SMatthew G. Knepley   /* Put values in F */
26149566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &af));
26159c8ab049SStefano Zampini   PetscCall(VecGetDM(F, &dmF));
26169c8ab049SStefano Zampini   if (dmF) PetscCall(DMGetLocalSection(dmF, &sectionF));
26179c8ab049SStefano Zampini   PetscCall(VecGetLocalSize(F, &n));
26189c8ab049SStefano Zampini   PetscCheck(n >= (cEnd - cStart) * Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vector size %" PetscInt_FMT " < %" PetscInt_FMT, n, (cEnd - cStart) * Nf);
2619cbf8eb3cSStefano Zampini   printFEM = ((DM_Plex *)dm->data)->printFEM;
2620338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2621338f77d5SMatthew G. Knepley     const PetscInt c   = cell - cStart;
26229c8ab049SStefano Zampini     PetscInt       dof = Nf, off = c * Nf;
2623338f77d5SMatthew G. Knepley 
2624cbf8eb3cSStefano Zampini     if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
26259c8ab049SStefano Zampini     if (sectionF) {
26269566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionF, cell, &dof));
26279566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(sectionF, cell, &off));
26289c8ab049SStefano Zampini     }
262963a3b9bcSJacob Faibussowitsch     PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf);
2630338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f];
2631338f77d5SMatthew G. Knepley   }
26329566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &af));
26339566063dSJacob Faibussowitsch   PetscCall(PetscFree(cintegral));
26349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2635cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&dm));
26363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
263773d901b8SMatthew G. Knepley }
263873d901b8SMatthew G. Knepley 
263979ab67a3SMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user)
2640d71ae5a4SJacob Faibussowitsch {
26419b6f715bSMatthew G. Knepley   DM                 plex = NULL, plexA = NULL;
2642a6e0b375SMatthew G. Knepley   DMEnclosureType    encAux;
26439b6f715bSMatthew G. Knepley   PetscDS            prob, probAux       = NULL;
26449b6f715bSMatthew G. Knepley   PetscSection       section, sectionAux = NULL;
26459b6f715bSMatthew G. Knepley   Vec                locA = NULL;
26469b6f715bSMatthew G. Knepley   DMField            coordField;
26479b6f715bSMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x;
26489b6f715bSMatthew G. Knepley   PetscInt           NfAux = 0, totDimAux = 0, *aOff = NULL;
26499b6f715bSMatthew G. Knepley   PetscScalar       *u, *a = NULL;
265064c72086SMatthew G. Knepley   const PetscScalar *constants;
26519b6f715bSMatthew G. Knepley   PetscInt           numConstants, f;
265264c72086SMatthew G. Knepley 
265364c72086SMatthew G. Knepley   PetscFunctionBegin;
26549566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
26559566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
26569566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
26579566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
26589566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
265964c72086SMatthew G. Knepley   /* Determine which discretizations we have */
26609b6f715bSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
266164c72086SMatthew G. Knepley     PetscObject  obj;
266264c72086SMatthew G. Knepley     PetscClassId id;
266364c72086SMatthew G. Knepley 
26649566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
26659566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
266663a3b9bcSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f);
266764c72086SMatthew G. Knepley   }
266864c72086SMatthew G. Knepley   /* Read DS information */
26699566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
26709566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
26719566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
26729566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
267364c72086SMatthew G. Knepley   /* Read Auxiliary DS information */
26749566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
26759b6f715bSMatthew G. Knepley   if (locA) {
26769b6f715bSMatthew G. Knepley     DM dmAux;
26779b6f715bSMatthew G. Knepley 
26789566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
26799566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
26809566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
26819566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
26829566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
26839566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
26849566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
26859566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
268664c72086SMatthew G. Knepley   }
26879b6f715bSMatthew G. Knepley   /* Integrate over points */
26889b6f715bSMatthew G. Knepley   {
26899b6f715bSMatthew G. Knepley     PetscFEGeom    *fgeom, *chunkGeom = NULL;
2690b7260050SToby Isaac     PetscInt        maxDegree;
26919b6f715bSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
26929b6f715bSMatthew G. Knepley     const PetscInt *points;
26939b6f715bSMatthew G. Knepley     PetscInt        numFaces, face, Nq, field;
26949b6f715bSMatthew G. Knepley     PetscInt        numChunks, chunkSize, chunk, Nr, offset;
269564c72086SMatthew G. Knepley 
26969566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
26979566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
269832603206SJames Wright     PetscCall(PetscCalloc2(numFaces * totDim, &u, (locA ? (size_t)numFaces * totDimAux : 0), &a));
26999566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
270079ab67a3SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
270179ab67a3SMatthew G. Knepley       const PetscInt point = points[face], *support;
270279ab67a3SMatthew G. Knepley       PetscScalar   *x     = NULL;
270379ab67a3SMatthew G. Knepley 
270479ab67a3SMatthew G. Knepley       PetscCall(DMPlexGetSupport(dm, point, &support));
270579ab67a3SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
270679ab67a3SMatthew G. Knepley       for (PetscInt i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
270779ab67a3SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
270879ab67a3SMatthew G. Knepley       if (locA) {
270979ab67a3SMatthew G. Knepley         PetscInt subp;
271079ab67a3SMatthew G. Knepley         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
271179ab67a3SMatthew G. Knepley         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
271279ab67a3SMatthew G. Knepley         for (PetscInt i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i];
271379ab67a3SMatthew G. Knepley         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
271479ab67a3SMatthew G. Knepley       }
271579ab67a3SMatthew G. Knepley     }
271664c72086SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
271764c72086SMatthew G. Knepley       PetscFE fe;
271864c72086SMatthew G. Knepley 
27199566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe));
27209566063dSJacob Faibussowitsch       if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
27219b6f715bSMatthew G. Knepley       if (!qGeom) {
27229566063dSJacob Faibussowitsch         PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
27239566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)qGeom));
27249b6f715bSMatthew G. Knepley       }
27259566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
27269566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
27279b6f715bSMatthew G. Knepley       /* Get blocking */
27289b6f715bSMatthew G. Knepley       {
27299b6f715bSMatthew G. Knepley         PetscQuadrature q;
27309b6f715bSMatthew G. Knepley         PetscInt        numBatches, batchSize, numBlocks, blockSize;
27319b6f715bSMatthew G. Knepley         PetscInt        Nq, Nb;
27329b6f715bSMatthew G. Knepley 
27339566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
27349566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &q));
27359566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
27369566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
273764c72086SMatthew G. Knepley         blockSize = Nb * Nq;
273864c72086SMatthew G. Knepley         batchSize = numBlocks * blockSize;
27399b6f715bSMatthew G. Knepley         chunkSize = numBatches * batchSize;
27409566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
27419b6f715bSMatthew G. Knepley         numChunks = numFaces / chunkSize;
27429b6f715bSMatthew G. Knepley         Nr        = numFaces % chunkSize;
274364c72086SMatthew G. Knepley         offset    = numFaces - Nr;
274464c72086SMatthew G. Knepley       }
27459b6f715bSMatthew G. Knepley       /* Do integration for each field */
27469b6f715bSMatthew G. Knepley       for (chunk = 0; chunk < numChunks; ++chunk) {
27479566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom));
274879ab67a3SMatthew G. Knepley         PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], chunkSize, chunkGeom, &u[chunk * chunkSize * totDim], probAux, PetscSafePointerPlusOffset(a, chunk * chunkSize * totDimAux), &fintegral[chunk * chunkSize * Nf]));
27499566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
275064c72086SMatthew G. Knepley       }
27519566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
275279ab67a3SMatthew G. Knepley       PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &fintegral[offset * Nf]));
27539566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
275464c72086SMatthew G. Knepley       /* Cleanup data arrays */
27559566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
27569566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&qGeom));
275779ab67a3SMatthew G. Knepley     }
27589566063dSJacob Faibussowitsch     PetscCall(PetscFree2(u, a));
27599566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
276064c72086SMatthew G. Knepley   }
27619566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
27629566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
27633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27649b6f715bSMatthew G. Knepley }
27659b6f715bSMatthew G. Knepley 
276660225df5SJacob Faibussowitsch /*@C
27679b6f715bSMatthew G. Knepley   DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user
27689b6f715bSMatthew G. Knepley 
27699b6f715bSMatthew G. Knepley   Input Parameters:
27709b6f715bSMatthew G. Knepley + dm      - The mesh
27719b6f715bSMatthew G. Knepley . X       - Global input vector
2772a1cb98faSBarry Smith . label   - The boundary `DMLabel`
2773a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values
2774a1cb98faSBarry Smith . vals    - The label values to use, or NULL for all values
277579ab67a3SMatthew G. Knepley . funcs   - The functions to integrate along the boundary for each field
27769b6f715bSMatthew G. Knepley - user    - The user context
27779b6f715bSMatthew G. Knepley 
27789b6f715bSMatthew G. Knepley   Output Parameter:
27799b6f715bSMatthew G. Knepley . integral - Integral for each field
27809b6f715bSMatthew G. Knepley 
27819b6f715bSMatthew G. Knepley   Level: developer
27829b6f715bSMatthew G. Knepley 
27831cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()`
27849b6f715bSMatthew G. Knepley @*/
278579ab67a3SMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user)
2786d71ae5a4SJacob Faibussowitsch {
27879b6f715bSMatthew G. Knepley   Vec          locX;
27889b6f715bSMatthew G. Knepley   PetscSection section;
27899b6f715bSMatthew G. Knepley   DMLabel      depthLabel;
27909b6f715bSMatthew G. Knepley   IS           facetIS;
27919b6f715bSMatthew G. Knepley   PetscInt     dim, Nf, f, v;
27929b6f715bSMatthew G. Knepley 
27939b6f715bSMatthew G. Knepley   PetscFunctionBegin;
27949b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27959b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2796292bffcbSToby Isaac   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
27974f572ea9SToby Isaac   if (vals) PetscAssertPointer(vals, 5);
27984f572ea9SToby Isaac   PetscAssertPointer(integral, 7);
27999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
28009566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
28019566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
28029566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
28039566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
28049566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
28059b6f715bSMatthew G. Knepley   /* Get local solution with boundary values */
28069566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
28079566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
28089566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
28099566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
28109b6f715bSMatthew G. Knepley   /* Loop over label values */
28119566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(integral, Nf));
28129b6f715bSMatthew G. Knepley   for (v = 0; v < numVals; ++v) {
28139b6f715bSMatthew G. Knepley     IS           pointIS;
28149b6f715bSMatthew G. Knepley     PetscInt     numFaces, face;
28159b6f715bSMatthew G. Knepley     PetscScalar *fintegral;
28169b6f715bSMatthew G. Knepley 
28179566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS));
28189b6f715bSMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
28199b6f715bSMatthew G. Knepley     {
28209b6f715bSMatthew G. Knepley       IS isectIS;
28219b6f715bSMatthew G. Knepley 
28229b6f715bSMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
28239566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
28249566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
28259b6f715bSMatthew G. Knepley       pointIS = isectIS;
28269b6f715bSMatthew G. Knepley     }
28279566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
28289566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(numFaces * Nf, &fintegral));
282979ab67a3SMatthew G. Knepley     PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, funcs, fintegral, user));
28309b6f715bSMatthew G. Knepley     /* Sum point contributions into integral */
28319371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
28329371c9d4SSatish Balay       for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f];
28339566063dSJacob Faibussowitsch     PetscCall(PetscFree(fintegral));
28349566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
28359b6f715bSMatthew G. Knepley   }
28369566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
28379566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
28389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
28393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
284064c72086SMatthew G. Knepley }
284164c72086SMatthew G. Knepley 
2842d69c5d34SMatthew G. Knepley /*@
28430318f8a0SStefano Zampini   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix from the coarse `DM` to a uniformly refined `DM`.
2844d69c5d34SMatthew G. Knepley 
2845d69c5d34SMatthew G. Knepley   Input Parameters:
2846cf51de39SMatthew G. Knepley + dmc       - The coarse mesh
2847cf51de39SMatthew G. Knepley . dmf       - The fine mesh
2848cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology
2849d69c5d34SMatthew G. Knepley - user      - The user context
2850d69c5d34SMatthew G. Knepley 
2851d69c5d34SMatthew G. Knepley   Output Parameter:
2852934789fcSMatthew G. Knepley . In - The interpolation matrix
2853d69c5d34SMatthew G. Knepley 
2854d69c5d34SMatthew G. Knepley   Level: developer
2855d69c5d34SMatthew G. Knepley 
2856ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`
2857d69c5d34SMatthew G. Knepley @*/
2858d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user)
2859d71ae5a4SJacob Faibussowitsch {
2860d69c5d34SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmc->data;
2861d69c5d34SMatthew G. Knepley   const char  *name = "Interpolator";
2862d69c5d34SMatthew G. Knepley   PetscFE     *feRef;
286397c42addSMatthew G. Knepley   PetscFV     *fvRef;
2864d69c5d34SMatthew G. Knepley   PetscSection fsection, fglobalSection;
2865d69c5d34SMatthew G. Knepley   PetscSection csection, cglobalSection;
2866d69c5d34SMatthew G. Knepley   PetscScalar *elemMat;
2867485ad865SMatthew G. Knepley   PetscInt     dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c;
28682ea9c922SToby Isaac   PetscInt     cTotDim = 0, rTotDim = 0;
2869d69c5d34SMatthew G. Knepley 
2870d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
28719566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
28729566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
28739566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
28749566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
28759566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
28769566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
28779566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
28789566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
28799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef));
2880d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
28812ea9c922SToby Isaac     PetscObject  obj, objc;
28822ea9c922SToby Isaac     PetscClassId id, idc;
28832ea9c922SToby Isaac     PetscInt     rNb = 0, Nc = 0, cNb = 0;
2884d69c5d34SMatthew G. Knepley 
28859566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmf, f, NULL, &obj));
28869566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
288797c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
288897c42addSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
288997c42addSMatthew G. Knepley 
2890cf51de39SMatthew G. Knepley       if (isRefined) {
28919566063dSJacob Faibussowitsch         PetscCall(PetscFERefine(fe, &feRef[f]));
2892cf51de39SMatthew G. Knepley       } else {
28939566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fe));
2894cf51de39SMatthew G. Knepley         feRef[f] = fe;
2895cf51de39SMatthew G. Knepley       }
28969566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &rNb));
28979566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
289897c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
289997c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
290097c42addSMatthew G. Knepley       PetscDualSpace Q;
290197c42addSMatthew G. Knepley 
2902cf51de39SMatthew G. Knepley       if (isRefined) {
29039566063dSJacob Faibussowitsch         PetscCall(PetscFVRefine(fv, &fvRef[f]));
2904cf51de39SMatthew G. Knepley       } else {
29059566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fv));
2906cf51de39SMatthew G. Knepley         fvRef[f] = fv;
2907cf51de39SMatthew G. Knepley       }
29089566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
29099566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &rNb));
29109566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
29119566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
291297c42addSMatthew G. Knepley     }
29139566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmc, f, NULL, &objc));
29149566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(objc, &idc));
29152ea9c922SToby Isaac     if (idc == PETSCFE_CLASSID) {
29162ea9c922SToby Isaac       PetscFE fe = (PetscFE)objc;
29172ea9c922SToby Isaac 
29189566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &cNb));
29192ea9c922SToby Isaac     } else if (id == PETSCFV_CLASSID) {
29202ea9c922SToby Isaac       PetscFV        fv = (PetscFV)obj;
29212ea9c922SToby Isaac       PetscDualSpace Q;
29222ea9c922SToby Isaac 
29239566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
29249566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &cNb));
2925d69c5d34SMatthew G. Knepley     }
29262ea9c922SToby Isaac     rTotDim += rNb;
29272ea9c922SToby Isaac     cTotDim += cNb;
29282ea9c922SToby Isaac   }
29299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat));
29309566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim));
2931d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
2932d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
2933d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
2934d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2935d69c5d34SMatthew G. Knepley     PetscReal       *points;
2936d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
2937d69c5d34SMatthew G. Knepley 
2938d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
293997c42addSMatthew G. Knepley     if (feRef[fieldI]) {
29409566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref));
29419566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc));
294297c42addSMatthew G. Knepley     } else {
29439566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref));
29449566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc));
294597c42addSMatthew G. Knepley     }
29469566063dSJacob Faibussowitsch     PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim));
2947d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
29489566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
29499566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL));
2950d69c5d34SMatthew G. Knepley       npoints += Np;
2951d69c5d34SMatthew G. Knepley     }
29529566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(npoints * dim, &points));
2953d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
29549566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
29559566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL));
29569371c9d4SSatish Balay       for (p = 0; p < Np; ++p, ++k)
29579371c9d4SSatish Balay         for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d];
2958d69c5d34SMatthew G. Knepley     }
2959d69c5d34SMatthew G. Knepley 
2960d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
296197c42addSMatthew G. Knepley       PetscObject  obj;
296297c42addSMatthew G. Knepley       PetscClassId id;
29639c3cf19fSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j, qNc;
2964d69c5d34SMatthew G. Knepley 
29659566063dSJacob Faibussowitsch       PetscCall(DMGetField(dmc, fieldJ, NULL, &obj));
29669566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
296797c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
296897c42addSMatthew G. Knepley         PetscFE         fe = (PetscFE)obj;
2969ef0bb6c7SMatthew G. Knepley         PetscTabulation T  = NULL;
2970d69c5d34SMatthew G. Knepley 
2971d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
29729566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &NcJ));
29739566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &cpdim));
2974ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
2975ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
297663a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
29779566063dSJacob Faibussowitsch           PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T));
2978d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
29799566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
29809566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
298163a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
2982d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
298336a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2984d172c84bSMatthew G. Knepley                 /*
2985d172c84bSMatthew G. Knepley                    cTotDim:            Total columns in element interpolation matrix, sum of number of dual basis functionals in each field
2986d172c84bSMatthew G. Knepley                    offsetI, offsetJ:   Offsets into the larger element interpolation matrix for different fields
2987d172c84bSMatthew G. Knepley                    fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals
2988d172c84bSMatthew G. Knepley                    qNC, Nc, Ncj, c:    Number of components in this field
2989d172c84bSMatthew G. Knepley                    Np, p:              Number of quad points in the fine grid functional i
2990d172c84bSMatthew G. Knepley                    k:                  i*Np + p, overall point number for the interpolation
2991d172c84bSMatthew G. Knepley                 */
2992ef0bb6c7SMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c];
299336a6d9c0SMatthew G. Knepley               }
2994d69c5d34SMatthew G. Knepley             }
2995d69c5d34SMatthew G. Knepley           }
29969566063dSJacob Faibussowitsch           PetscCall(PetscTabulationDestroy(&T));
2997ffe73a53SMatthew G. Knepley         }
299897c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
299997c42addSMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
300097c42addSMatthew G. Knepley 
300197c42addSMatthew G. Knepley         /* Evaluate constant function at points */
30029566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &NcJ));
300397c42addSMatthew G. Knepley         cpdim = 1;
300497c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
300597c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
300663a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
300797c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
30089566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
30099566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
301063a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
301197c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
301297c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
3013458eb97cSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c];
301497c42addSMatthew G. Knepley               }
301597c42addSMatthew G. Knepley             }
301697c42addSMatthew G. Knepley           }
301797c42addSMatthew G. Knepley         }
301897c42addSMatthew G. Knepley       }
3019d172c84bSMatthew G. Knepley       offsetJ += cpdim;
3020d69c5d34SMatthew G. Knepley     }
3021d172c84bSMatthew G. Knepley     offsetI += fpdim;
30229566063dSJacob Faibussowitsch     PetscCall(PetscFree(points));
3023d69c5d34SMatthew G. Knepley   }
30249566063dSJacob Faibussowitsch   if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat));
30257f5b169aSMatthew G. Knepley   /* Preallocate matrix */
30267f5b169aSMatthew G. Knepley   {
3027c094ef40SMatthew G. Knepley     Mat          preallocator;
3028c094ef40SMatthew G. Knepley     PetscScalar *vals;
3029c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
3030c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
30317f5b169aSMatthew G. Knepley 
30329566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(In, &locRows, &locCols));
30339566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator));
30349566063dSJacob Faibussowitsch     PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
30359566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
30369566063dSJacob Faibussowitsch     PetscCall(MatSetUp(preallocator));
30379566063dSJacob Faibussowitsch     PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices));
30387f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3039cf51de39SMatthew G. Knepley       if (isRefined) {
30409566063dSJacob Faibussowitsch         PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices));
30419566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES));
3042cf51de39SMatthew G. Knepley       } else {
3043e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, preallocator, cell, vals, INSERT_VALUES));
3044cf51de39SMatthew G. Knepley       }
30457f5b169aSMatthew G. Knepley     }
30469566063dSJacob Faibussowitsch     PetscCall(PetscFree3(vals, cellCIndices, cellFIndices));
30479566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
30489566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
30499566063dSJacob Faibussowitsch     PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In));
30509566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&preallocator));
30517f5b169aSMatthew G. Knepley   }
30527f5b169aSMatthew G. Knepley   /* Fill matrix */
30539566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(In));
3054d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
3055cf51de39SMatthew G. Knepley     if (isRefined) {
30569566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
3057cf51de39SMatthew G. Knepley     } else {
3058e8e188d2SZach Atkins       PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, In, c, elemMat, INSERT_VALUES));
3059cf51de39SMatthew G. Knepley     }
3060d69c5d34SMatthew G. Knepley   }
30619566063dSJacob Faibussowitsch   for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f]));
30629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(feRef, fvRef));
30639566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
30649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
30659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
30669318fe57SMatthew G. Knepley   if (mesh->printFEM > 1) {
30679566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name));
30682ce66baaSPierre Jolivet     PetscCall(MatFilter(In, 1.0e-10, PETSC_FALSE, PETSC_FALSE));
30699566063dSJacob Faibussowitsch     PetscCall(MatView(In, NULL));
3070d69c5d34SMatthew G. Knepley   }
30719566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
30723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3073d69c5d34SMatthew G. Knepley }
30746c73c22cSMatthew G. Knepley 
3075d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user)
3076d71ae5a4SJacob Faibussowitsch {
3077bd041c0cSMatthew G. Knepley   SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness");
3078bd041c0cSMatthew G. Knepley }
3079bd041c0cSMatthew G. Knepley 
308068132eb9SMatthew G. Knepley /*@
30810318f8a0SStefano Zampini   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix from the coarse `DM` to a non-nested fine `DM`.
308268132eb9SMatthew G. Knepley 
308368132eb9SMatthew G. Knepley   Input Parameters:
308468132eb9SMatthew G. Knepley + dmf  - The fine mesh
308568132eb9SMatthew G. Knepley . dmc  - The coarse mesh
308668132eb9SMatthew G. Knepley - user - The user context
308768132eb9SMatthew G. Knepley 
308868132eb9SMatthew G. Knepley   Output Parameter:
308968132eb9SMatthew G. Knepley . In - The interpolation matrix
309068132eb9SMatthew G. Knepley 
309168132eb9SMatthew G. Knepley   Level: developer
309268132eb9SMatthew G. Knepley 
3093ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`
309468132eb9SMatthew G. Knepley @*/
3095d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
3096d71ae5a4SJacob Faibussowitsch {
309764e98e1dSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
309864e98e1dSMatthew G. Knepley   const char  *name = "Interpolator";
30994ef9d792SMatthew G. Knepley   PetscDS      prob;
3100a0806964SMatthew G. Knepley   Mat          interp;
3101a0806964SMatthew G. Knepley   PetscSection fsection, globalFSection;
3102a0806964SMatthew G. Knepley   PetscSection csection, globalCSection;
3103a0806964SMatthew G. Knepley   PetscInt     locRows, locCols;
31044ef9d792SMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
31054ef9d792SMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
31064ef9d792SMatthew G. Knepley   PetscScalar *elemMat;
3107a0806964SMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s;
31084ef9d792SMatthew G. Knepley 
31094ef9d792SMatthew G. Knepley   PetscFunctionBegin;
31109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
31119566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
31129566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
31139566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
31149566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
31159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
31169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
31179566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
31189566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
31199566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
31209566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
3121a0806964SMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd));
31229566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
31239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
31244ef9d792SMatthew G. Knepley 
3125a0806964SMatthew G. Knepley   PetscCall(MatGetLocalSize(In, &locRows, &locCols));
3126a0806964SMatthew G. Knepley   PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp));
3127a0806964SMatthew G. Knepley   PetscCall(MatSetType(interp, MATPREALLOCATOR));
3128a0806964SMatthew G. Knepley   PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
3129a0806964SMatthew G. Knepley   PetscCall(MatSetUp(interp));
3130a0806964SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
31314ef9d792SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
31324ef9d792SMatthew G. Knepley       PetscObject      obj;
31334ef9d792SMatthew G. Knepley       PetscClassId     id;
3134c0d7054bSMatthew G. Knepley       PetscDualSpace   Q = NULL;
3135ef0bb6c7SMatthew G. Knepley       PetscTabulation  T = NULL;
31364ef9d792SMatthew G. Knepley       PetscQuadrature  f;
31374ef9d792SMatthew G. Knepley       const PetscReal *qpoints, *qweights;
3138d0f6233fSMatthew G. Knepley       PetscInt         Nc, qNc, Np, fpdim, off, i, d;
31394ef9d792SMatthew G. Knepley 
3140d0f6233fSMatthew G. Knepley       PetscCall(PetscDSGetFieldOffset(prob, field, &off));
31419566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, &obj));
31429566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
31434ef9d792SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
31444ef9d792SMatthew G. Knepley         PetscFE fe = (PetscFE)obj;
31454ef9d792SMatthew G. Knepley 
31469566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDualSpace(fe, &Q));
31479566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &Nc));
3148a0806964SMatthew G. Knepley         if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T));
31494ef9d792SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
31504ef9d792SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
31514ef9d792SMatthew G. Knepley 
31529566063dSJacob Faibussowitsch         PetscCall(PetscFVGetDualSpace(fv, &Q));
31534ef9d792SMatthew G. Knepley         Nc = 1;
315463a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
31559566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fpdim));
31564ef9d792SMatthew G. Knepley       /* For each fine grid cell */
31574ef9d792SMatthew G. Knepley       for (cell = cStart; cell < cEnd; ++cell) {
31584ef9d792SMatthew G. Knepley         PetscInt *findices, *cindices;
31594ef9d792SMatthew G. Knepley         PetscInt  numFIndices, numCIndices;
31604ef9d792SMatthew G. Knepley 
31619566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
31629566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3163d0f6233fSMatthew G. Knepley         PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim);
31644ef9d792SMatthew G. Knepley         for (i = 0; i < fpdim; ++i) {
31654ef9d792SMatthew G. Knepley           Vec                pointVec;
31664ef9d792SMatthew G. Knepley           PetscScalar       *pV;
316712111d7cSToby Isaac           PetscSF            coarseCellSF = NULL;
31683a93e3b7SToby Isaac           const PetscSFNode *coarseCells;
3169d0f6233fSMatthew G. Knepley           PetscInt           numCoarseCells, cpdim, row = findices[i + off], q, c, j;
31704ef9d792SMatthew G. Knepley 
31714ef9d792SMatthew G. Knepley           /* Get points from the dual basis functional quadrature */
31729566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetFunctional(Q, i, &f));
31739566063dSJacob Faibussowitsch           PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights));
317463a3b9bcSJacob Faibussowitsch           PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc);
31759566063dSJacob Faibussowitsch           PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec));
31769566063dSJacob Faibussowitsch           PetscCall(VecSetBlockSize(pointVec, dim));
31779566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
31784ef9d792SMatthew G. Knepley           for (q = 0; q < Np; ++q) {
3179c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
3180c330f8ffSToby Isaac 
31814ef9d792SMatthew G. Knepley             /* Transform point to real space */
3182c330f8ffSToby Isaac             CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
31834ef9d792SMatthew G. Knepley             for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
31844ef9d792SMatthew G. Knepley           }
31859566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
31864ef9d792SMatthew G. Knepley           /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
31871555c271SMatthew G. Knepley           /* OPT: Read this out from preallocation information */
31889566063dSJacob Faibussowitsch           PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
31894ef9d792SMatthew G. Knepley           /* Update preallocation info */
31909566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
31915f80ce2aSJacob Faibussowitsch           PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
31929566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
31934ef9d792SMatthew G. Knepley           for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3194826eb36dSMatthew G. Knepley             PetscReal       pVReal[3];
3195c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
3196826eb36dSMatthew G. Knepley 
31979566063dSJacob Faibussowitsch             PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3198a0806964SMatthew G. Knepley             if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim));
3199a0806964SMatthew G. Knepley             else cpdim = 1;
3200a0806964SMatthew G. Knepley 
3201a0806964SMatthew G. Knepley             if (s) {
32024ef9d792SMatthew G. Knepley               /* Transform points from real space to coarse reference space */
32039566063dSJacob Faibussowitsch               PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3204e2d86523SMatthew G. Knepley               for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3205c330f8ffSToby Isaac               CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
32064ef9d792SMatthew G. Knepley 
32074ef9d792SMatthew G. Knepley               if (id == PETSCFE_CLASSID) {
32084ef9d792SMatthew G. Knepley                 /* Evaluate coarse basis on contained point */
3209a0806964SMatthew G. Knepley                 PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T));
32109566063dSJacob Faibussowitsch                 PetscCall(PetscArrayzero(elemMat, cpdim));
32114ef9d792SMatthew G. Knepley                 /* Get elemMat entries by multiplying by weight */
32124ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
3213ef0bb6c7SMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c];
32144ef9d792SMatthew G. Knepley                 }
32154ef9d792SMatthew G. Knepley               } else {
32164ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
32179c3cf19fSMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c];
32184ef9d792SMatthew G. Knepley                 }
32194ef9d792SMatthew G. Knepley               }
32209566063dSJacob Faibussowitsch               if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
3221a0806964SMatthew G. Knepley             }
3222a0806964SMatthew G. Knepley             /* Update interpolator */
3223d0f6233fSMatthew G. Knepley             PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim);
3224a0806964SMatthew G. Knepley             PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES));
32259566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
32264ef9d792SMatthew G. Knepley           }
32279566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
32289566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseCellSF));
32299566063dSJacob Faibussowitsch           PetscCall(VecDestroy(&pointVec));
32304ef9d792SMatthew G. Knepley         }
32319566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
32324ef9d792SMatthew G. Knepley       }
3233a0806964SMatthew G. Knepley       if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3234a0806964SMatthew G. Knepley     }
3235a0806964SMatthew G. Knepley     if (!s) {
3236a0806964SMatthew G. Knepley       PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY));
3237a0806964SMatthew G. Knepley       PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY));
3238a0806964SMatthew G. Knepley       PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In));
3239a0806964SMatthew G. Knepley       PetscCall(MatDestroy(&interp));
3240a0806964SMatthew G. Knepley       interp = In;
3241a0806964SMatthew G. Knepley     }
32424ef9d792SMatthew G. Knepley   }
32439566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
32449566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
32459566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
32469566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
32479566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
32489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
32493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32504ef9d792SMatthew G. Knepley }
32514ef9d792SMatthew G. Knepley 
325246fa42a0SMatthew G. Knepley /*@
32530318f8a0SStefano Zampini   DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix from the coarse `DM` to a non-nested fine `DM`.
3254bd041c0cSMatthew G. Knepley 
3255bd041c0cSMatthew G. Knepley   Input Parameters:
3256bd041c0cSMatthew G. Knepley + dmf  - The fine mesh
3257bd041c0cSMatthew G. Knepley . dmc  - The coarse mesh
3258bd041c0cSMatthew G. Knepley - user - The user context
3259bd041c0cSMatthew G. Knepley 
3260bd041c0cSMatthew G. Knepley   Output Parameter:
3261bd041c0cSMatthew G. Knepley . mass - The mass matrix
3262bd041c0cSMatthew G. Knepley 
3263bd041c0cSMatthew G. Knepley   Level: developer
3264bd041c0cSMatthew G. Knepley 
3265ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`
3266bd041c0cSMatthew G. Knepley @*/
3267d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user)
3268d71ae5a4SJacob Faibussowitsch {
3269bd041c0cSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
3270bd041c0cSMatthew G. Knepley   const char  *name = "Mass Matrix";
3271bd041c0cSMatthew G. Knepley   PetscDS      prob;
3272bd041c0cSMatthew G. Knepley   PetscSection fsection, csection, globalFSection, globalCSection;
3273e8f14785SLisandro Dalcin   PetscHSetIJ  ht;
3274bd041c0cSMatthew G. Knepley   PetscLayout  rLayout;
3275bd041c0cSMatthew G. Knepley   PetscInt    *dnz, *onz;
3276bd041c0cSMatthew G. Knepley   PetscInt     locRows, rStart, rEnd;
3277bd041c0cSMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
3278bd041c0cSMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
3279bd041c0cSMatthew G. Knepley   PetscScalar *elemMat;
3280bd041c0cSMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
3281bd041c0cSMatthew G. Knepley 
3282bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
32839566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
32849566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
32859566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
32869566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
32879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
32889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
32899566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
32909566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
32919566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
32929566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
32939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd));
32949566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
32959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
3296bd041c0cSMatthew G. Knepley 
32979566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mass, &locRows, NULL));
32989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout));
32999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(rLayout, locRows));
33009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(rLayout, 1));
33019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rLayout));
33029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd));
33039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rLayout));
33049566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz));
33059566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJCreate(&ht));
3306bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3307bd041c0cSMatthew G. Knepley     PetscObject      obj;
3308bd041c0cSMatthew G. Knepley     PetscClassId     id;
3309bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3310bd041c0cSMatthew G. Knepley     const PetscReal *qpoints;
3311bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3312bd041c0cSMatthew G. Knepley 
33139566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
33149566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
33159566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
33169566063dSJacob Faibussowitsch     else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
33179566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL));
3318bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3319bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3320bd041c0cSMatthew G. Knepley       Vec                pointVec;
3321bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3322bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3323bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3324bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, q, c;
3325bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3326bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3327bd041c0cSMatthew G. Knepley 
33289566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
33299566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3330bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
33319566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
33329566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
33339566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3334bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3335c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3336c330f8ffSToby Isaac 
3337bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3338c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3339bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3340bd041c0cSMatthew G. Knepley       }
33419566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3342bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
33439566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
33449566063dSJacob Faibussowitsch       PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view"));
3345bd041c0cSMatthew G. Knepley       /* Update preallocation info */
33469566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
33475f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
3348bd041c0cSMatthew G. Knepley       {
3349e8f14785SLisandro Dalcin         PetscHashIJKey key;
3350e8f14785SLisandro Dalcin         PetscBool      missing;
3351bd041c0cSMatthew G. Knepley 
3352bd041c0cSMatthew G. Knepley         for (i = 0; i < numFIndices; ++i) {
3353e8f14785SLisandro Dalcin           key.i = findices[i];
3354e8f14785SLisandro Dalcin           if (key.i >= 0) {
3355bd041c0cSMatthew G. Knepley             /* Get indices for coarse elements */
3356bd041c0cSMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
33579566063dSJacob Faibussowitsch               PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3358bd041c0cSMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
3359e8f14785SLisandro Dalcin                 key.j = cindices[c];
3360e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
33619566063dSJacob Faibussowitsch                 PetscCall(PetscHSetIJQueryAdd(ht, key, &missing));
3362bd041c0cSMatthew G. Knepley                 if (missing) {
3363e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart];
3364e8f14785SLisandro Dalcin                   else ++onz[key.i - rStart];
3365bd041c0cSMatthew G. Knepley                 }
3366bd041c0cSMatthew G. Knepley               }
33679566063dSJacob Faibussowitsch               PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3368bd041c0cSMatthew G. Knepley             }
3369bd041c0cSMatthew G. Knepley           }
3370bd041c0cSMatthew G. Knepley         }
3371bd041c0cSMatthew G. Knepley       }
33729566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
33739566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
33749566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3375bd041c0cSMatthew G. Knepley     }
3376bd041c0cSMatthew G. Knepley   }
33779566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJDestroy(&ht));
33789566063dSJacob Faibussowitsch   PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL));
33799566063dSJacob Faibussowitsch   PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
33809566063dSJacob Faibussowitsch   PetscCall(PetscFree2(dnz, onz));
3381bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3382bd041c0cSMatthew G. Knepley     PetscObject      obj;
3383bd041c0cSMatthew G. Knepley     PetscClassId     id;
3384ef0bb6c7SMatthew G. Knepley     PetscTabulation  T, Tfine;
3385bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3386bd041c0cSMatthew G. Knepley     const PetscReal *qpoints, *qweights;
3387bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3388bd041c0cSMatthew G. Knepley 
33899566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
33909566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3391ef0bb6c7SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
33929566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
33939566063dSJacob Faibussowitsch       PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine));
33949566063dSJacob Faibussowitsch       PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T));
3395ef0bb6c7SMatthew G. Knepley     } else {
33969566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
3397ef0bb6c7SMatthew G. Knepley     }
33989566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights));
3399bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3400bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3401bd041c0cSMatthew G. Knepley       Vec                pointVec;
3402bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3403bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3404bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3405bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, cpdim, q, c, j;
3406bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3407bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3408bd041c0cSMatthew G. Knepley 
34099566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
34109566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3411bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
34129566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
34139566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
34149566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3415bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3416c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3417c330f8ffSToby Isaac 
3418bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3419c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3420bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3421bd041c0cSMatthew G. Knepley       }
34229566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3423bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
34249566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
3425bd041c0cSMatthew G. Knepley       /* Update matrix */
34269566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
34275f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
34289566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3429bd041c0cSMatthew G. Knepley       for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3430bd041c0cSMatthew G. Knepley         PetscReal       pVReal[3];
3431c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3432c330f8ffSToby Isaac 
34339566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3434bd041c0cSMatthew G. Knepley         /* Transform points from real space to coarse reference space */
34359566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3436bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3437c330f8ffSToby Isaac         CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
3438bd041c0cSMatthew G. Knepley 
3439bd041c0cSMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
3440bd041c0cSMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
3441bd041c0cSMatthew G. Knepley 
3442bd041c0cSMatthew G. Knepley           /* Evaluate coarse basis on contained point */
34439566063dSJacob Faibussowitsch           PetscCall(PetscFEGetDimension(fe, &cpdim));
34449566063dSJacob Faibussowitsch           PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T));
3445bd041c0cSMatthew G. Knepley           /* Get elemMat entries by multiplying by weight */
3446bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
34479566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3448bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3449ef0bb6c7SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ;
3450bd041c0cSMatthew G. Knepley             }
3451bd041c0cSMatthew G. Knepley             /* Update interpolator */
34529566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
345363a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
34549566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3455bd041c0cSMatthew G. Knepley           }
3456bd041c0cSMatthew G. Knepley         } else {
3457bd041c0cSMatthew G. Knepley           cpdim = 1;
3458bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
34599566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3460bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3461bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ;
3462bd041c0cSMatthew G. Knepley             }
3463bd041c0cSMatthew G. Knepley             /* Update interpolator */
34649566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
346563a3b9bcSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices));
346663a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
34679566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3468bd041c0cSMatthew G. Knepley           }
3469bd041c0cSMatthew G. Knepley         }
34709566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3471bd041c0cSMatthew G. Knepley       }
34729566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
34739566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
34749566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
34759566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3476bd041c0cSMatthew G. Knepley     }
34779566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3478bd041c0cSMatthew G. Knepley   }
34799566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
34809566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
34819566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
34829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY));
34839566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY));
34843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3485bd041c0cSMatthew G. Knepley }
3486bd041c0cSMatthew G. Knepley 
3487bd041c0cSMatthew G. Knepley /*@
348846fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
348946fa42a0SMatthew G. Knepley 
349046fa42a0SMatthew G. Knepley   Input Parameters:
349146fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
349260225df5SJacob Faibussowitsch . dmf  - The fine mesh
349346fa42a0SMatthew G. Knepley - user - The user context
349446fa42a0SMatthew G. Knepley 
349546fa42a0SMatthew G. Knepley   Output Parameter:
349646fa42a0SMatthew G. Knepley . sc - The mapping
349746fa42a0SMatthew G. Knepley 
349846fa42a0SMatthew G. Knepley   Level: developer
349946fa42a0SMatthew G. Knepley 
3500ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`
350146fa42a0SMatthew G. Knepley @*/
3502d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
3503d71ae5a4SJacob Faibussowitsch {
3504e9d4ef1bSMatthew G. Knepley   PetscDS      prob;
35057c927364SMatthew G. Knepley   PetscFE     *feRef;
350697c42addSMatthew G. Knepley   PetscFV     *fvRef;
35077c927364SMatthew G. Knepley   Vec          fv, cv;
35087c927364SMatthew G. Knepley   IS           fis, cis;
35097c927364SMatthew G. Knepley   PetscSection fsection, fglobalSection, csection, cglobalSection;
35107c927364SMatthew G. Knepley   PetscInt    *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
3511485ad865SMatthew G. Knepley   PetscInt     cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m;
35126f3d3cbcSMatthew G. Knepley   PetscBool   *needAvg;
35137c927364SMatthew G. Knepley 
35147c927364SMatthew G. Knepley   PetscFunctionBegin;
35159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
35169566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
35179566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
35189566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
35199566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
35209566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
35219566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
35229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
35239566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
35249566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg));
35257c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
352697c42addSMatthew G. Knepley     PetscObject  obj;
352797c42addSMatthew G. Knepley     PetscClassId id;
3528aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
35297c927364SMatthew G. Knepley 
35309566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
35319566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
353297c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
353397c42addSMatthew G. Knepley       PetscFE    fe = (PetscFE)obj;
35346f3d3cbcSMatthew G. Knepley       PetscSpace sp;
35359b2fc754SMatthew G. Knepley       PetscInt   maxDegree;
353697c42addSMatthew G. Knepley 
35379566063dSJacob Faibussowitsch       PetscCall(PetscFERefine(fe, &feRef[f]));
35389566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &fNb));
35399566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
35409566063dSJacob Faibussowitsch       PetscCall(PetscFEGetBasisSpace(fe, &sp));
35419566063dSJacob Faibussowitsch       PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree));
35429b2fc754SMatthew G. Knepley       if (!maxDegree) needAvg[f] = PETSC_TRUE;
354397c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
354497c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
354597c42addSMatthew G. Knepley       PetscDualSpace Q;
354697c42addSMatthew G. Knepley 
35479566063dSJacob Faibussowitsch       PetscCall(PetscFVRefine(fv, &fvRef[f]));
35489566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
35499566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fNb));
35509566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
35516f3d3cbcSMatthew G. Knepley       needAvg[f] = PETSC_TRUE;
355297c42addSMatthew G. Knepley     }
3553d172c84bSMatthew G. Knepley     fTotDim += fNb;
35547c927364SMatthew G. Knepley   }
35559566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &cTotDim));
35569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cTotDim, &cmap));
35577c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
35587c927364SMatthew G. Knepley     PetscFE        feC;
355997c42addSMatthew G. Knepley     PetscFV        fvC;
35607c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
3561d172c84bSMatthew G. Knepley     PetscInt       order = -1, NcF, NcC, fpdim, cpdim;
35627c927364SMatthew G. Knepley 
356397c42addSMatthew G. Knepley     if (feRef[field]) {
35649566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC));
35659566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feC, &NcC));
35669566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[field], &NcF));
35679566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[field], &QF));
35689566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetOrder(QF, &order));
35699566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
35709566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feC, &QC));
35719566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
357297c42addSMatthew G. Knepley     } else {
35739566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC));
35749566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvC, &NcC));
35759566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF));
35769566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[field], &QF));
35779566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
35789566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvC, &QC));
35799566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
358097c42addSMatthew G. Knepley     }
358163a3b9bcSJacob Faibussowitsch     PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC);
35827c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
35837c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
3584d172c84bSMatthew G. Knepley       const PetscReal *cqpoints, *cqweights;
3585d172c84bSMatthew G. Knepley       PetscInt         NqcC, NpC;
358697c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
35877c927364SMatthew G. Knepley 
35889566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc));
35899566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights));
359063a3b9bcSJacob Faibussowitsch       PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC);
35911dca8a05SBarry Smith       PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
35927c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
35937c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
3594d172c84bSMatthew G. Knepley         const PetscReal *fqpoints, *fqweights;
35957c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
3596d172c84bSMatthew G. Knepley         PetscInt         NqcF, NpF;
35977c927364SMatthew G. Knepley 
35989566063dSJacob Faibussowitsch         PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc));
35999566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights));
360063a3b9bcSJacob Faibussowitsch         PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF);
36017c927364SMatthew G. Knepley         if (NpC != NpF) continue;
36027c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
36037c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
3604d172c84bSMatthew G. Knepley         for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]);
3605d172c84bSMatthew G. Knepley         if (sum < 1.0e-9) continue;
3606d172c84bSMatthew G. Knepley         cmap[offsetC + c] = offsetF + f;
360797c42addSMatthew G. Knepley         found             = PETSC_TRUE;
36087c927364SMatthew G. Knepley         break;
36097c927364SMatthew G. Knepley       }
361097c42addSMatthew G. Knepley       if (!found) {
361197c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
3612d172c84bSMatthew G. Knepley         if (fvRef[field] || (feRef[field] && order == 0)) {
3613d172c84bSMatthew G. Knepley           cmap[offsetC + c] = offsetF + 0;
361497c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
361597c42addSMatthew G. Knepley       }
36167c927364SMatthew G. Knepley     }
3617d172c84bSMatthew G. Knepley     offsetC += cpdim;
3618d172c84bSMatthew G. Knepley     offsetF += fpdim;
36197c927364SMatthew G. Knepley   }
36209371c9d4SSatish Balay   for (f = 0; f < Nf; ++f) {
36219371c9d4SSatish Balay     PetscCall(PetscFEDestroy(&feRef[f]));
36229371c9d4SSatish Balay     PetscCall(PetscFVDestroy(&fvRef[f]));
36239371c9d4SSatish Balay   }
36249566063dSJacob Faibussowitsch   PetscCall(PetscFree3(feRef, fvRef, needAvg));
36257c927364SMatthew G. Knepley 
36269566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmf, &fv));
36279566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmc, &cv));
36289566063dSJacob Faibussowitsch   PetscCall(VecGetOwnershipRange(cv, &startC, &endC));
36299566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m));
36309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices));
36319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &cindices));
36329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &findices));
36337c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
36347c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
36359566063dSJacob Faibussowitsch     PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices));
36367c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
36370bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
3638d2457c26SMatthew G. Knepley       PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, c, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]);
36397c927364SMatthew G. Knepley       cindices[cellCIndices[d] - startC] = cellCIndices[d];
36407c927364SMatthew G. Knepley       findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]];
36417c927364SMatthew G. Knepley     }
36427c927364SMatthew G. Knepley   }
36439566063dSJacob Faibussowitsch   PetscCall(PetscFree(cmap));
36449566063dSJacob Faibussowitsch   PetscCall(PetscFree2(cellCIndices, cellFIndices));
36457c927364SMatthew G. Knepley 
36469566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis));
36479566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis));
36489566063dSJacob Faibussowitsch   PetscCall(VecScatterCreate(cv, cis, fv, fis, sc));
36499566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cis));
36509566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&fis));
36519566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmf, &fv));
36529566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmc, &cv));
36539566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
36543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3655cb1e1211SMatthew G Knepley }
3656a1cf66bbSMatthew G. Knepley 
36572f856554SMatthew G. Knepley /*@C
36582f856554SMatthew G. Knepley   DMPlexGetCellFields - Retrieve the field values values for a chunk of cells
36592f856554SMatthew G. Knepley 
36602f856554SMatthew G. Knepley   Input Parameters:
3661a1cb98faSBarry Smith + dm     - The `DM`
36622f856554SMatthew G. Knepley . cellIS - The cells to include
36632f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
36642f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
36652f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
36662f856554SMatthew G. Knepley 
36672f856554SMatthew G. Knepley   Output Parameters:
36682f856554SMatthew G. Knepley + u   - The field coefficients
36692f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
36702f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
36712f856554SMatthew G. Knepley 
36722f856554SMatthew G. Knepley   Level: developer
36732f856554SMatthew G. Knepley 
36741cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
36752f856554SMatthew G. Knepley @*/
3676d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3677d71ae5a4SJacob Faibussowitsch {
36782f856554SMatthew G. Knepley   DM              plex, plexA = NULL;
3679a6e0b375SMatthew G. Knepley   DMEnclosureType encAux;
36802f856554SMatthew G. Knepley   PetscSection    section, sectionAux;
36812f856554SMatthew G. Knepley   PetscDS         prob;
36822f856554SMatthew G. Knepley   const PetscInt *cells;
36832f856554SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, totDim, totDimAux, c;
36842f856554SMatthew G. Knepley 
36852f856554SMatthew G. Knepley   PetscFunctionBegin;
36862f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3687064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
3688ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4);
3689ad540459SPierre Jolivet   if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5);
36904f572ea9SToby Isaac   PetscAssertPointer(u, 6);
36914f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
36924f572ea9SToby Isaac   PetscAssertPointer(a, 8);
36939566063dSJacob Faibussowitsch   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
36949566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
36959566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
369607218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
36979566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
36982f856554SMatthew G. Knepley   if (locA) {
36992f856554SMatthew G. Knepley     DM      dmAux;
37002f856554SMatthew G. Knepley     PetscDS probAux;
37012f856554SMatthew G. Knepley 
37029566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
37039566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
37049566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
37059566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
37069566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
37079566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
37082f856554SMatthew G. Knepley   }
37092f856554SMatthew G. Knepley   numCells = cEnd - cStart;
37109566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
37119371c9d4SSatish Balay   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
3712ad540459SPierre Jolivet   else *u_t = NULL;
37139371c9d4SSatish Balay   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
3714ad540459SPierre Jolivet   else *a = NULL;
37152f856554SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
37162f856554SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
37172f856554SMatthew G. Knepley     const PetscInt cind = c - cStart;
37182f856554SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a;
37192f856554SMatthew G. Knepley     PetscInt       i;
37202f856554SMatthew G. Knepley 
37219566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x));
37222f856554SMatthew G. Knepley     for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i];
37239566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x));
37242f856554SMatthew G. Knepley     if (locX_t) {
37259566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
37262f856554SMatthew G. Knepley       for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i];
37279566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
37282f856554SMatthew G. Knepley     }
37292f856554SMatthew G. Knepley     if (locA) {
37302f856554SMatthew G. Knepley       PetscInt subcell;
37319566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
37329566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x));
37332f856554SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i];
37349566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x));
37352f856554SMatthew G. Knepley     }
37362f856554SMatthew G. Knepley   }
37379566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
37389566063dSJacob Faibussowitsch   if (locA) PetscCall(DMDestroy(&plexA));
37399566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
37403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37412f856554SMatthew G. Knepley }
37422f856554SMatthew G. Knepley 
37432f856554SMatthew G. Knepley /*@C
37442f856554SMatthew G. Knepley   DMPlexRestoreCellFields - Restore the field values values for a chunk of cells
37452f856554SMatthew G. Knepley 
37462f856554SMatthew G. Knepley   Input Parameters:
3747a1cb98faSBarry Smith + dm     - The `DM`
37482f856554SMatthew G. Knepley . cellIS - The cells to include
37492f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
37502f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
37512f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
37522f856554SMatthew G. Knepley 
37532f856554SMatthew G. Knepley   Output Parameters:
37542f856554SMatthew G. Knepley + u   - The field coefficients
37552f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
37562f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
37572f856554SMatthew G. Knepley 
37582f856554SMatthew G. Knepley   Level: developer
37592f856554SMatthew G. Knepley 
37601cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
37612f856554SMatthew G. Knepley @*/
3762d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3763d71ae5a4SJacob Faibussowitsch {
37642f856554SMatthew G. Knepley   PetscFunctionBegin;
37659566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u));
37669566063dSJacob Faibussowitsch   if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t));
37679566063dSJacob Faibussowitsch   if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a));
37683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37692f856554SMatthew G. Knepley }
37702f856554SMatthew G. Knepley 
3771a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3772d71ae5a4SJacob Faibussowitsch {
377307218a29SMatthew G. Knepley   DM              plex, plexA = NULL;
377407218a29SMatthew G. Knepley   DMEnclosureType encAux;
377507218a29SMatthew G. Knepley   PetscSection    section, sectionAux;
377607218a29SMatthew G. Knepley   PetscDS         ds, dsIn;
37776528b96dSMatthew G. Knepley   const PetscInt *cells;
377807218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f;
37796528b96dSMatthew G. Knepley 
37806528b96dSMatthew G. Knepley   PetscFunctionBegin;
378107218a29SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
378207218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2);
378307218a29SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
378407218a29SMatthew G. Knepley   if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); }
378507218a29SMatthew G. Knepley   if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); }
37864f572ea9SToby Isaac   PetscAssertPointer(u, 6);
37874f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
37884f572ea9SToby Isaac   PetscAssertPointer(a, 8);
378907218a29SMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
379007218a29SMatthew G. Knepley   numCells = cEnd - cStart;
379107218a29SMatthew G. Knepley   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
379207218a29SMatthew G. Knepley   PetscCall(DMGetLocalSection(dm, &section));
379307218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
379407218a29SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(dsIn, &Nf));
379507218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDim));
379607218a29SMatthew G. Knepley   if (locA) {
379707218a29SMatthew G. Knepley     DM      dmAux;
379807218a29SMatthew G. Knepley     PetscDS probAux;
379907218a29SMatthew G. Knepley 
380007218a29SMatthew G. Knepley     PetscCall(VecGetDM(locA, &dmAux));
380107218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
380207218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
380307218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
380407218a29SMatthew G. Knepley     PetscCall(DMGetDS(dmAux, &probAux));
380507218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
380607218a29SMatthew G. Knepley   }
380707218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
380807218a29SMatthew G. Knepley   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
380907218a29SMatthew G. Knepley   else {
381007218a29SMatthew G. Knepley     *u_t = NULL;
381107218a29SMatthew G. Knepley   }
381207218a29SMatthew G. Knepley   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
381307218a29SMatthew G. Knepley   else {
381407218a29SMatthew G. Knepley     *a = NULL;
381507218a29SMatthew G. Knepley   }
381607218a29SMatthew G. Knepley   // Loop over cohesive cells
381707218a29SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
381807218a29SMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
381907218a29SMatthew G. Knepley     const PetscInt  cind = c - cStart;
382074a0c561SMatthew G. Knepley     PetscScalar    *xf = NULL, *xc = NULL, *x = NULL, *xf_t = NULL, *xc_t = NULL;
38218e3a54c0SPierre Jolivet     PetscScalar    *ul = &(*u)[cind * totDim], *ul_t = PetscSafePointerPlusOffset(*u_t, cind * totDim);
382207218a29SMatthew G. Knepley     const PetscInt *cone, *ornt;
382307218a29SMatthew G. Knepley     PetscInt        Nx = 0, Nxf, s;
382407218a29SMatthew G. Knepley 
382507218a29SMatthew G. Knepley     PetscCall(DMPlexGetCone(dm, cell, &cone));
382607218a29SMatthew G. Knepley     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
382707218a29SMatthew G. Knepley     // Put in cohesive unknowns
382807218a29SMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf));
382974a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &xf_t));
383007218a29SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
383107218a29SMatthew G. Knepley       PetscInt  fdofIn, foff, foffIn;
383207218a29SMatthew G. Knepley       PetscBool cohesive;
383307218a29SMatthew G. Knepley 
383407218a29SMatthew G. Knepley       PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
383507218a29SMatthew G. Knepley       if (!cohesive) continue;
383607218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
383707218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff));
383807218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
383907218a29SMatthew G. Knepley       for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i];
384074a0c561SMatthew G. Knepley       if (locX_t)
384174a0c561SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + i] = xf_t[foff + i];
384207218a29SMatthew G. Knepley       Nx += fdofIn;
384307218a29SMatthew G. Knepley     }
384407218a29SMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf));
384574a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &xf_t));
384607218a29SMatthew G. Knepley     // Loop over sides of surface
384707218a29SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
384807218a29SMatthew G. Knepley       const PetscInt *support;
384907218a29SMatthew G. Knepley       const PetscInt  face = cone[s];
385007218a29SMatthew G. Knepley       PetscInt        ssize, ncell, Nxc;
385107218a29SMatthew G. Knepley 
385207218a29SMatthew G. Knepley       // I don't think I need the face to have 0 orientation in the hybrid cell
385307218a29SMatthew G. Knepley       //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]);
385407218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupport(dm, face, &support));
385507218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
385607218a29SMatthew G. Knepley       if (support[0] == cell) ncell = support[1];
385707218a29SMatthew G. Knepley       else if (support[1] == cell) ncell = support[0];
385807218a29SMatthew G. Knepley       else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
385907218a29SMatthew G. Knepley       // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields
386007218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc));
386174a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, ncell, NULL, &xc_t));
386207218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
386307218a29SMatthew G. Knepley         PetscInt  fdofIn, foffIn;
386407218a29SMatthew G. Knepley         PetscBool cohesive;
386507218a29SMatthew G. Knepley 
386607218a29SMatthew G. Knepley         PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
386707218a29SMatthew G. Knepley         if (cohesive) continue;
386807218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
386907218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
387007218a29SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foffIn + i];
387174a0c561SMatthew G. Knepley         if (locX_t)
387274a0c561SMatthew G. Knepley           for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + s * fdofIn + i] = xc_t[foffIn + i];
387307218a29SMatthew G. Knepley         Nx += fdofIn;
387407218a29SMatthew G. Knepley       }
387507218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc));
387674a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, ncell, NULL, &xc_t));
387707218a29SMatthew G. Knepley     }
387807218a29SMatthew G. Knepley     PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim);
387907218a29SMatthew G. Knepley 
388007218a29SMatthew G. Knepley     if (locA) {
388107218a29SMatthew G. Knepley       PetscScalar *al = &(*a)[cind * totDimAux];
388207218a29SMatthew G. Knepley       PetscInt     subcell;
388307218a29SMatthew G. Knepley 
388407218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
388507218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
388607218a29SMatthew G. Knepley       PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux);
388707218a29SMatthew G. Knepley       for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i];
388807218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
388907218a29SMatthew G. Knepley     }
389007218a29SMatthew G. Knepley   }
389107218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plex));
389207218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plexA));
389307218a29SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
389407218a29SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
389507218a29SMatthew G. Knepley }
389607218a29SMatthew G. Knepley 
389707218a29SMatthew G. Knepley /*
38983e2b0218SMatthew G. Knepley   DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface
389907218a29SMatthew G. Knepley 
390007218a29SMatthew G. Knepley   Input Parameters:
390107218a29SMatthew G. Knepley + dm      - The full domain DM
390207218a29SMatthew G. Knepley . dmX     - An array of DM for the field, say an auxiliary DM, indexed by s
390307218a29SMatthew G. Knepley . dsX     - An array of PetscDS for the field, indexed by s
390407218a29SMatthew G. Knepley . cellIS  - The interface cells for which we want values
390507218a29SMatthew G. Knepley . locX    - An array of local vectors with the field values, indexed by s
390607218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face
390707218a29SMatthew G. Knepley 
390807218a29SMatthew G. Knepley   Output Parameter:
390907218a29SMatthew G. Knepley . x       - An array of field values, indexed by s
391007218a29SMatthew G. Knepley 
391107218a29SMatthew G. Knepley   Note:
391276fbde31SPierre Jolivet   The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`.
391307218a29SMatthew G. Knepley 
391407218a29SMatthew G. Knepley   Level: advanced
391507218a29SMatthew G. Knepley 
391676fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()`
391707218a29SMatthew G. Knepley */
391807218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
391907218a29SMatthew G. Knepley {
392007218a29SMatthew G. Knepley   DM              plexX[2];
392107218a29SMatthew G. Knepley   DMEnclosureType encX[2];
392207218a29SMatthew G. Knepley   PetscSection    sectionX[2];
392307218a29SMatthew G. Knepley   const PetscInt *cells;
392407218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, s, totDimX[2];
392507218a29SMatthew G. Knepley 
392607218a29SMatthew G. Knepley   PetscFunctionBegin;
39274f572ea9SToby Isaac   PetscAssertPointer(locX, 5);
392807218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
39294f572ea9SToby Isaac   PetscAssertPointer(dmX, 2);
39304f572ea9SToby Isaac   PetscAssertPointer(dsX, 3);
393107218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4);
39324f572ea9SToby Isaac   PetscAssertPointer(x, 7);
39339566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
39346528b96dSMatthew G. Knepley   numCells = cEnd - cStart;
3935148442b3SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
393607218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2);
393707218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3);
393807218a29SMatthew G. Knepley     PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5);
393907218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE));
394007218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s]));
394107218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmX[s], &sectionX[s]));
394207218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s]));
394307218a29SMatthew G. Knepley     PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s]));
394404c51a94SMatthew G. Knepley   }
3945148442b3SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
39466528b96dSMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
39476528b96dSMatthew G. Knepley     const PetscInt  cind = c - cStart;
39486528b96dSMatthew G. Knepley     const PetscInt *cone, *ornt;
39496528b96dSMatthew G. Knepley 
39509566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
39519566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
395207218a29SMatthew G. Knepley     //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]);
3953148442b3SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
395407218a29SMatthew G. Knepley       const PetscInt tdX     = totDimX[s];
395507218a29SMatthew G. Knepley       PetscScalar   *closure = NULL, *xl = &x[s][cind * tdX];
395607218a29SMatthew G. Knepley       PetscInt       face = cone[s], point = face, subpoint, Nx, i;
395707218a29SMatthew G. Knepley 
395807218a29SMatthew G. Knepley       if (useCell) {
39595fedec97SMatthew G. Knepley         const PetscInt *support;
396007218a29SMatthew G. Knepley         PetscInt        ssize;
39616528b96dSMatthew G. Knepley 
396207218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, face, &support));
396307218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
396407218a29SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize);
396507218a29SMatthew G. Knepley         if (support[0] == cell) point = support[1];
396607218a29SMatthew G. Knepley         else if (support[1] == cell) point = support[0];
396707218a29SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
396807218a29SMatthew G. Knepley       }
396907218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint));
3970e8e188d2SZach Atkins       PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], PETSC_FALSE, locX[s], subpoint, ornt[s], &Nx, &closure));
397107218a29SMatthew G. Knepley       PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX);
397207218a29SMatthew G. Knepley       for (i = 0; i < Nx; ++i) xl[i] = closure[i];
397307218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure));
39746528b96dSMatthew G. Knepley     }
39756528b96dSMatthew G. Knepley   }
397607218a29SMatthew G. Knepley   for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s]));
39779566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
39783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39796528b96dSMatthew G. Knepley }
39806528b96dSMatthew G. Knepley 
398107218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
3982d71ae5a4SJacob Faibussowitsch {
39836528b96dSMatthew G. Knepley   PetscFunctionBegin;
398407218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
398507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0]));
398607218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1]));
39873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39886528b96dSMatthew G. Knepley }
39896528b96dSMatthew G. Knepley 
39902f856554SMatthew G. Knepley /*@C
39912f856554SMatthew G. Knepley   DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces
39922f856554SMatthew G. Knepley 
39932f856554SMatthew G. Knepley   Input Parameters:
3994a1cb98faSBarry Smith + dm           - The `DM`
39952f856554SMatthew G. Knepley . fStart       - The first face to include
39962f856554SMatthew G. Knepley . fEnd         - The first face to exclude
39972f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
39982f856554SMatthew G. Knepley . locX_t       - A local vector with solution field time derivatives, or NULL
39992f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
40002f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
400160225df5SJacob Faibussowitsch - locGrad      - A local vector with field gradients, or NULL
40022f856554SMatthew G. Knepley 
40032f856554SMatthew G. Knepley   Output Parameters:
40042f856554SMatthew G. Knepley + Nface - The number of faces with field values
40052f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
40062f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
40072f856554SMatthew G. Knepley 
40082f856554SMatthew G. Knepley   Level: developer
40092f856554SMatthew G. Knepley 
40101cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
40112f856554SMatthew G. Knepley @*/
4012d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
4013d71ae5a4SJacob Faibussowitsch {
40142f856554SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad = NULL;
40152f856554SMatthew G. Knepley   PetscSection       section;
40162f856554SMatthew G. Knepley   PetscDS            prob;
40172f856554SMatthew G. Knepley   DMLabel            ghostLabel;
40182f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *x, *lgrad;
40192f856554SMatthew G. Knepley   PetscBool         *isFE;
40202f856554SMatthew G. Knepley   PetscInt           dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face;
40212f856554SMatthew G. Knepley 
40222f856554SMatthew G. Knepley   PetscFunctionBegin;
40232f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
40242f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
4025ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);
40262f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6);
40272f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7);
4028ad540459SPierre Jolivet   if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);
40294f572ea9SToby Isaac   PetscAssertPointer(uL, 10);
40304f572ea9SToby Isaac   PetscAssertPointer(uR, 11);
40319566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
40329566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
40339566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
40349566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
40359566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalComponents(prob, &Nc));
40369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &isFE));
40372f856554SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
40382f856554SMatthew G. Knepley     PetscObject  obj;
40392f856554SMatthew G. Knepley     PetscClassId id;
40402f856554SMatthew G. Knepley 
40419566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
40429566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
40439371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
40449371c9d4SSatish Balay       isFE[f] = PETSC_TRUE;
40459371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
40469371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
40479371c9d4SSatish Balay     } else {
40489371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
40499371c9d4SSatish Balay     }
40502f856554SMatthew G. Knepley   }
40519566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
40529566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(locX, &x));
40539566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
40549566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
40559566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
40569566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
40572f856554SMatthew G. Knepley   if (locGrad) {
40589566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locGrad, &dmGrad));
40599566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
40602f856554SMatthew G. Knepley   }
40619566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL));
40629566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR));
40632f856554SMatthew G. Knepley   /* Right now just eat the extra work for FE (could make a cell loop) */
40642f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
40652f856554SMatthew G. Knepley     const PetscInt  *cells;
40662f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
40672f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
40682f856554SMatthew G. Knepley     PetscScalar     *xL, *xR, *gL, *gR;
40692f856554SMatthew G. Knepley     PetscScalar     *uLl = *uL, *uRl = *uR;
40702f856554SMatthew G. Knepley     PetscInt         ghost, nsupp, nchild;
40712f856554SMatthew G. Knepley 
40729566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
40739566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
40749566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
40752f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
40769566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
40779566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
40789566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
40799566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
40802f856554SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
40812f856554SMatthew G. Knepley       PetscInt off;
40822f856554SMatthew G. Knepley 
40839566063dSJacob Faibussowitsch       PetscCall(PetscDSGetComponentOffset(prob, f, &off));
40842f856554SMatthew G. Knepley       if (isFE[f]) {
40852f856554SMatthew G. Knepley         const PetscInt *cone;
40862f856554SMatthew G. Knepley         PetscInt        comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d;
40872f856554SMatthew G. Knepley 
40882f856554SMatthew G. Knepley         xL = xR = NULL;
40899566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
4090835f2295SStefano Zampini         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, &xL));
4091835f2295SStefano Zampini         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, &xR));
40929566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[0], &cone));
40939566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL));
40949371c9d4SSatish Balay         for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL)
40959371c9d4SSatish Balay           if (cone[faceLocL] == face) break;
40969566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[1], &cone));
40979566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR));
40989371c9d4SSatish Balay         for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR)
40999371c9d4SSatish Balay           if (cone[faceLocR] == face) break;
41001dca8a05SBarry Smith         PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]);
41012f856554SMatthew G. Knepley         /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */
41022f856554SMatthew G. Knepley         /* TODO: this is a hack that might not be right for nonconforming */
41032f856554SMatthew G. Knepley         if (faceLocL < coneSizeL) {
41049566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off]));
41059566063dSJacob Faibussowitsch           if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
41062f856554SMatthew G. Knepley           else {
41079371c9d4SSatish Balay             for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d];
41089371c9d4SSatish Balay           }
41099371c9d4SSatish Balay         } else {
41109566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
41119566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
41122f856554SMatthew G. Knepley           for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d];
41132f856554SMatthew G. Knepley         }
4114835f2295SStefano Zampini         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, &xL));
4115835f2295SStefano Zampini         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, &xR));
41162f856554SMatthew G. Knepley       } else {
41172f856554SMatthew G. Knepley         PetscFV  fv;
41182f856554SMatthew G. Knepley         PetscInt numComp, c;
41192f856554SMatthew G. Knepley 
41209566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv));
41219566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &numComp));
41229566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL));
41239566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR));
41242f856554SMatthew G. Knepley         if (dmGrad) {
41252f856554SMatthew G. Knepley           PetscReal dxL[3], dxR[3];
41262f856554SMatthew G. Knepley 
41279566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL));
41289566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR));
41292f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL);
41302f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR);
41312f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
41322f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL);
41332f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR);
41342f856554SMatthew G. Knepley           }
41352f856554SMatthew G. Knepley         } else {
41362f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
41372f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c];
41382f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c];
41392f856554SMatthew G. Knepley           }
41402f856554SMatthew G. Knepley         }
41412f856554SMatthew G. Knepley       }
41422f856554SMatthew G. Knepley     }
41432f856554SMatthew G. Knepley     ++iface;
41442f856554SMatthew G. Knepley   }
41452f856554SMatthew G. Knepley   *Nface = iface;
41469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(locX, &x));
41479566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
41489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
414948a46eb9SPierre Jolivet   if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
41509566063dSJacob Faibussowitsch   PetscCall(PetscFree(isFE));
41513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41522f856554SMatthew G. Knepley }
41532f856554SMatthew G. Knepley 
41542f856554SMatthew G. Knepley /*@C
41552f856554SMatthew G. Knepley   DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces
41562f856554SMatthew G. Knepley 
41572f856554SMatthew G. Knepley   Input Parameters:
4158a1cb98faSBarry Smith + dm           - The `DM`
41592f856554SMatthew G. Knepley . fStart       - The first face to include
41602f856554SMatthew G. Knepley . fEnd         - The first face to exclude
41612f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
41622f856554SMatthew G. Knepley . locX_t       - A local vector with solution field time derivatives, or NULL
41632f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
41642f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
416560225df5SJacob Faibussowitsch - locGrad      - A local vector with field gradients, or NULL
41662f856554SMatthew G. Knepley 
41672f856554SMatthew G. Knepley   Output Parameters:
41682f856554SMatthew G. Knepley + Nface - The number of faces with field values
41692f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
41702f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
41712f856554SMatthew G. Knepley 
41722f856554SMatthew G. Knepley   Level: developer
41732f856554SMatthew G. Knepley 
41741cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
41752f856554SMatthew G. Knepley @*/
4176d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
4177d71ae5a4SJacob Faibussowitsch {
41782f856554SMatthew G. Knepley   PetscFunctionBegin;
41799566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL));
41809566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR));
41813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41822f856554SMatthew G. Knepley }
41832f856554SMatthew G. Knepley 
41842f856554SMatthew G. Knepley /*@C
41852f856554SMatthew G. Knepley   DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces
41862f856554SMatthew G. Knepley 
41872f856554SMatthew G. Knepley   Input Parameters:
4188a1cb98faSBarry Smith + dm           - The `DM`
41892f856554SMatthew G. Knepley . fStart       - The first face to include
41902f856554SMatthew G. Knepley . fEnd         - The first face to exclude
41912f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
41922f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
41932f856554SMatthew G. Knepley 
41942f856554SMatthew G. Knepley   Output Parameters:
41952f856554SMatthew G. Knepley + Nface - The number of faces with field values
41962f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
41972f856554SMatthew G. Knepley - vol   - The cell volume
41982f856554SMatthew G. Knepley 
41992f856554SMatthew G. Knepley   Level: developer
42002f856554SMatthew G. Knepley 
42011cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
42022f856554SMatthew G. Knepley @*/
4203d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
4204d71ae5a4SJacob Faibussowitsch {
42052f856554SMatthew G. Knepley   DM                 dmFace, dmCell;
42062f856554SMatthew G. Knepley   DMLabel            ghostLabel;
42072f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom;
42082f856554SMatthew G. Knepley   PetscInt           dim, numFaces = fEnd - fStart, iface, face;
42092f856554SMatthew G. Knepley 
42102f856554SMatthew G. Knepley   PetscFunctionBegin;
42112f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
42122f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4);
42132f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5);
42144f572ea9SToby Isaac   PetscAssertPointer(fgeom, 7);
42154f572ea9SToby Isaac   PetscAssertPointer(vol, 8);
42169566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
42179566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
42189566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
42199566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
42209566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
42219566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
42229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFaces, fgeom));
42239566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol));
42242f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
42252f856554SMatthew G. Knepley     const PetscInt  *cells;
42262f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
42272f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
42282f856554SMatthew G. Knepley     PetscFVFaceGeom *fgeoml = *fgeom;
42292f856554SMatthew G. Knepley     PetscReal       *voll   = *vol;
42302f856554SMatthew G. Knepley     PetscInt         ghost, d, nchild, nsupp;
42312f856554SMatthew G. Knepley 
42329566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
42339566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
42349566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
42352f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
42369566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
42379566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
42389566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
42399566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
42402f856554SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
42412f856554SMatthew G. Knepley       fgeoml[iface].centroid[d] = fg->centroid[d];
42422f856554SMatthew G. Knepley       fgeoml[iface].normal[d]   = fg->normal[d];
42432f856554SMatthew G. Knepley     }
42442f856554SMatthew G. Knepley     voll[iface * 2 + 0] = cgL->volume;
42452f856554SMatthew G. Knepley     voll[iface * 2 + 1] = cgR->volume;
42462f856554SMatthew G. Knepley     ++iface;
42472f856554SMatthew G. Knepley   }
42482f856554SMatthew G. Knepley   *Nface = iface;
42499566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
42509566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
42513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42522f856554SMatthew G. Knepley }
42532f856554SMatthew G. Knepley 
42542f856554SMatthew G. Knepley /*@C
42552f856554SMatthew G. Knepley   DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces
42562f856554SMatthew G. Knepley 
42572f856554SMatthew G. Knepley   Input Parameters:
4258a1cb98faSBarry Smith + dm           - The `DM`
42592f856554SMatthew G. Knepley . fStart       - The first face to include
42602f856554SMatthew G. Knepley . fEnd         - The first face to exclude
42612f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
42622f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
42632f856554SMatthew G. Knepley 
42642f856554SMatthew G. Knepley   Output Parameters:
42652f856554SMatthew G. Knepley + Nface - The number of faces with field values
42662f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
42672f856554SMatthew G. Knepley - vol   - The cell volume
42682f856554SMatthew G. Knepley 
42692f856554SMatthew G. Knepley   Level: developer
42702f856554SMatthew G. Knepley 
42711cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
42722f856554SMatthew G. Knepley @*/
4273d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
4274d71ae5a4SJacob Faibussowitsch {
42752f856554SMatthew G. Knepley   PetscFunctionBegin;
42769566063dSJacob Faibussowitsch   PetscCall(PetscFree(*fgeom));
42779566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol));
42783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42792f856554SMatthew G. Knepley }
42802f856554SMatthew G. Knepley 
4281d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
4282d71ae5a4SJacob Faibussowitsch {
4283a1cf66bbSMatthew G. Knepley   char           composeStr[33] = {0};
4284a1cf66bbSMatthew G. Knepley   PetscObjectId  id;
4285a1cf66bbSMatthew G. Knepley   PetscContainer container;
4286a1cf66bbSMatthew G. Knepley 
4287a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
42889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
428963a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id));
42909566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
4291a1cf66bbSMatthew G. Knepley   if (container) {
42929566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
4293a1cf66bbSMatthew G. Knepley   } else {
42949566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
42959566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
42969566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
429749abdd8aSBarry Smith     PetscCall(PetscContainerSetCtxDestroy(container, PetscContainerCtxDestroy_PetscFEGeom));
42989566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
42999566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
4300a1cf66bbSMatthew G. Knepley   }
43013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4302a1cf66bbSMatthew G. Knepley }
4303a1cf66bbSMatthew G. Knepley 
4304d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
4305d71ae5a4SJacob Faibussowitsch {
4306a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
4307a1cf66bbSMatthew G. Knepley   *geom = NULL;
43083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4309a1cf66bbSMatthew G. Knepley }
4310a1cf66bbSMatthew G. Knepley 
4311d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user)
4312d71ae5a4SJacob Faibussowitsch {
431392d50984SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
431492d50984SMatthew G. Knepley   const char     *name       = "Residual";
431592d50984SMatthew G. Knepley   DM              dmAux      = NULL;
431692d50984SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
431792d50984SMatthew G. Knepley   PetscDS         prob       = NULL;
431892d50984SMatthew G. Knepley   PetscDS         probAux    = NULL;
431992d50984SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
432092d50984SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
432192d50984SMatthew G. Knepley   DMField         coordField = NULL;
4322c0006e53SPatrick Farrell   Vec             locA;
4323c0006e53SPatrick Farrell   PetscScalar    *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL;
432492d50984SMatthew G. Knepley   IS              chunkIS;
432592d50984SMatthew G. Knepley   const PetscInt *cells;
432692d50984SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
4327364207b6SKarl Rupp   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd;
43281690c2aeSBarry Smith   PetscInt        maxDegree = PETSC_INT_MAX;
432906ad1575SMatthew G. Knepley   PetscFormKey    key;
433092d50984SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
433192d50984SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
433292d50984SMatthew G. Knepley 
433392d50984SMatthew G. Knepley   PetscFunctionBegin;
43349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
433592d50984SMatthew G. Knepley   /* FEM+FVM */
433692d50984SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
43379566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
43389566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
43399566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
43409566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
43419566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
434292d50984SMatthew G. Knepley   if (locA) {
43439566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
43449566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
43459566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
434692d50984SMatthew G. Knepley   }
434792d50984SMatthew G. Knepley   /* 2: Get geometric data */
434892d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
434992d50984SMatthew G. Knepley     PetscObject  obj;
435092d50984SMatthew G. Knepley     PetscClassId id;
435192d50984SMatthew G. Knepley     PetscBool    fimp;
435292d50984SMatthew G. Knepley 
43539566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(prob, f, &fimp));
435492d50984SMatthew G. Knepley     if (isImplicit != fimp) continue;
43559566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
43569566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4357ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
43585f80ce2aSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented");
435992d50984SMatthew G. Knepley   }
436092d50984SMatthew G. Knepley   if (useFEM) {
43619566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
43629566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
436392d50984SMatthew G. Knepley     if (maxDegree <= 1) {
43649566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
436548a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
436692d50984SMatthew G. Knepley     } else {
43679566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
436892d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
436992d50984SMatthew G. Knepley         PetscObject  obj;
437092d50984SMatthew G. Knepley         PetscClassId id;
437192d50984SMatthew G. Knepley         PetscBool    fimp;
437292d50984SMatthew G. Knepley 
43739566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(prob, f, &fimp));
437492d50984SMatthew G. Knepley         if (isImplicit != fimp) continue;
43759566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
43769566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
437792d50984SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
437892d50984SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
437992d50984SMatthew G. Knepley 
43809566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
43819566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
43829566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
438392d50984SMatthew G. Knepley         }
438492d50984SMatthew G. Knepley       }
438592d50984SMatthew G. Knepley     }
438692d50984SMatthew G. Knepley   }
438792d50984SMatthew G. Knepley   /* Loop over chunks */
43889566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
43899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
43909566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
439192d50984SMatthew G. Knepley   numCells      = cEnd - cStart;
439292d50984SMatthew G. Knepley   numChunks     = 1;
439392d50984SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
439492d50984SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
43956528b96dSMatthew G. Knepley   key.label     = NULL;
43966528b96dSMatthew G. Knepley   key.value     = 0;
439706ad1575SMatthew G. Knepley   key.part      = 0;
439892d50984SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
4399c0006e53SPatrick Farrell     PetscScalar     *elemVec, *fluxL = NULL, *fluxR = NULL;
4400c0006e53SPatrick Farrell     PetscReal       *vol   = NULL;
4401c0006e53SPatrick Farrell     PetscFVFaceGeom *fgeom = NULL;
440292d50984SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
4403c0006e53SPatrick Farrell     PetscInt         numFaces = 0;
440492d50984SMatthew G. Knepley 
440592d50984SMatthew G. Knepley     /* Extract field coefficients */
440692d50984SMatthew G. Knepley     if (useFEM) {
44079566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
44089566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
44099566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
44109566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
441192d50984SMatthew G. Knepley     }
441292d50984SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
441392d50984SMatthew G. Knepley     /* Loop over fields */
441492d50984SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
441592d50984SMatthew G. Knepley       PetscObject  obj;
441692d50984SMatthew G. Knepley       PetscClassId id;
441792d50984SMatthew G. Knepley       PetscBool    fimp;
441892d50984SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
441992d50984SMatthew G. Knepley 
44206528b96dSMatthew G. Knepley       key.field = f;
44219566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(prob, f, &fimp));
442292d50984SMatthew G. Knepley       if (isImplicit != fimp) continue;
44239566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
44249566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
442592d50984SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
442692d50984SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
442792d50984SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
442892d50984SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
442992d50984SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
443092d50984SMatthew G. Knepley         PetscInt        Nq, Nb;
443192d50984SMatthew G. Knepley 
44329566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
44339566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
44349566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
443592d50984SMatthew G. Knepley         blockSize = Nb;
443692d50984SMatthew G. Knepley         batchSize = numBlocks * blockSize;
44379566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
443892d50984SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
443992d50984SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
444092d50984SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
444192d50984SMatthew G. Knepley         offset    = numCells - Nr;
444292d50984SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
444392d50984SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
44449566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
44459566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
44469566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
44478e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
44489566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
444992d50984SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
445092d50984SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
445192d50984SMatthew G. Knepley 
445292d50984SMatthew G. Knepley         Ne = numFaces;
445392d50984SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
445492d50984SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
44559566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
445663a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
445792d50984SMatthew G. Knepley     }
445892d50984SMatthew G. Knepley     /* Loop over domain */
445992d50984SMatthew G. Knepley     if (useFEM) {
446092d50984SMatthew G. Knepley       /* Add elemVec to locX */
446192d50984SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
446292d50984SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
446392d50984SMatthew G. Knepley         const PetscInt cind = c - cStart;
446492d50984SMatthew G. Knepley 
44659566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
446692d50984SMatthew G. Knepley         if (ghostLabel) {
446792d50984SMatthew G. Knepley           PetscInt ghostVal;
446892d50984SMatthew G. Knepley 
44699566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
447092d50984SMatthew G. Knepley           if (ghostVal > 0) continue;
447192d50984SMatthew G. Knepley         }
44729566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
447392d50984SMatthew G. Knepley       }
447492d50984SMatthew G. Knepley     }
447592d50984SMatthew G. Knepley     /* Handle time derivative */
447692d50984SMatthew G. Knepley     if (locX_t) {
447792d50984SMatthew G. Knepley       PetscScalar *x_t, *fa;
447892d50984SMatthew G. Knepley 
44799566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
44809566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
448192d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
448292d50984SMatthew G. Knepley         PetscFV      fv;
448392d50984SMatthew G. Knepley         PetscObject  obj;
448492d50984SMatthew G. Knepley         PetscClassId id;
448592d50984SMatthew G. Knepley         PetscInt     pdim, d;
448692d50984SMatthew G. Knepley 
44879566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
44889566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
448992d50984SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
449092d50984SMatthew G. Knepley         fv = (PetscFV)obj;
44919566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
449292d50984SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
449392d50984SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
449492d50984SMatthew G. Knepley           PetscScalar   *u_t, *r;
449592d50984SMatthew G. Knepley 
449692d50984SMatthew G. Knepley           if (ghostLabel) {
449792d50984SMatthew G. Knepley             PetscInt ghostVal;
449892d50984SMatthew G. Knepley 
44999566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
450092d50984SMatthew G. Knepley             if (ghostVal > 0) continue;
450192d50984SMatthew G. Knepley           }
45029566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
45039566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
450492d50984SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
450592d50984SMatthew G. Knepley         }
450692d50984SMatthew G. Knepley       }
45079566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
45089566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
450992d50984SMatthew G. Knepley     }
451092d50984SMatthew G. Knepley     if (useFEM) {
45119566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
45129566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
451392d50984SMatthew G. Knepley     }
451492d50984SMatthew G. Knepley   }
45159566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
45169566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
451792d50984SMatthew G. Knepley   /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */
451892d50984SMatthew G. Knepley   if (useFEM) {
451992d50984SMatthew G. Knepley     if (maxDegree <= 1) {
45209566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
45219566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
452292d50984SMatthew G. Knepley     } else {
452392d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
45249566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
45259566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
452692d50984SMatthew G. Knepley       }
45279566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
452892d50984SMatthew G. Knepley     }
452992d50984SMatthew G. Knepley   }
45309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
45313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
453292d50984SMatthew G. Knepley }
453392d50984SMatthew G. Knepley 
4534a1cf66bbSMatthew G. Knepley /*
4535a1cf66bbSMatthew G. Knepley   We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac
4536a1cf66bbSMatthew G. Knepley 
4537a1cf66bbSMatthew G. Knepley   X   - The local solution vector
4538a5b23f4aSJose E. Roman   X_t - The local solution time derivative vector, or NULL
4539a1cf66bbSMatthew G. Knepley */
4540d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx)
4541d71ae5a4SJacob Faibussowitsch {
4542a1cf66bbSMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
4543a1cf66bbSMatthew G. Knepley   const char     *name = "Jacobian", *nameP = "JacobianPre";
4544a1cf66bbSMatthew G. Knepley   DM              dmAux = NULL;
4545a1cf66bbSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
4546a1cf66bbSMatthew G. Knepley   PetscSection    sectionAux = NULL;
4547a1cf66bbSMatthew G. Knepley   Vec             A;
4548a1cf66bbSMatthew G. Knepley   DMField         coordField;
4549a1cf66bbSMatthew G. Knepley   PetscFEGeom    *cgeomFEM;
4550a1cf66bbSMatthew G. Knepley   PetscQuadrature qGeom = NULL;
4551a1cf66bbSMatthew G. Knepley   Mat             J = Jac, JP = JacP;
4552a1cf66bbSMatthew G. Knepley   PetscScalar    *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL;
4553e432b41dSStefano Zampini   PetscBool       hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE;
4554a1cf66bbSMatthew G. Knepley   const PetscInt *cells;
455506ad1575SMatthew G. Knepley   PetscFormKey    key;
45569b2fc754SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0;
4557a1cf66bbSMatthew G. Knepley 
4558a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
45599566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
45609566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
45619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
45629566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
45639566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A));
45649a2a23afSMatthew G. Knepley   if (A) {
45659566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
45669566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
45679566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
4568a1cf66bbSMatthew G. Knepley   }
4569a1cf66bbSMatthew G. Knepley   /* Get flags */
45709566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
45719566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE));
4572a1cf66bbSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
4573a1cf66bbSMatthew G. Knepley     PetscObject  disc;
4574a1cf66bbSMatthew G. Knepley     PetscClassId id;
45759566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc));
45769566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(disc, &id));
45779371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
45789371c9d4SSatish Balay       isFE[fieldI] = PETSC_TRUE;
45799371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
45809371c9d4SSatish Balay       hasFV        = PETSC_TRUE;
45819371c9d4SSatish Balay       isFE[fieldI] = PETSC_FALSE;
45829371c9d4SSatish Balay     }
4583a1cf66bbSMatthew G. Knepley   }
45849566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
45859566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
45869566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
4587a1cf66bbSMatthew G. Knepley   assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE;
4588a1cf66bbSMatthew G. Knepley   hasDyn      = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
45899566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */
45909566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
45919566063dSJacob Faibussowitsch   if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
4592a1cf66bbSMatthew G. Knepley   /* Compute batch sizes */
4593a1cf66bbSMatthew G. Knepley   if (isFE[0]) {
4594a1cf66bbSMatthew G. Knepley     PetscFE         fe;
4595a1cf66bbSMatthew G. Knepley     PetscQuadrature q;
4596a1cf66bbSMatthew G. Knepley     PetscInt        numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb;
4597a1cf66bbSMatthew G. Knepley 
45989566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
45999566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &q));
46009566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL));
46019566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
46029566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
4603a1cf66bbSMatthew G. Knepley     blockSize = Nb * numQuadPoints;
4604a1cf66bbSMatthew G. Knepley     batchSize = numBlocks * blockSize;
4605a1cf66bbSMatthew G. Knepley     chunkSize = numBatches * batchSize;
4606a1cf66bbSMatthew G. Knepley     numChunks = numCells / chunkSize + numCells % chunkSize;
46079566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
4608a1cf66bbSMatthew G. Knepley   } else {
4609a1cf66bbSMatthew G. Knepley     chunkSize = numCells;
4610a1cf66bbSMatthew G. Knepley     numChunks = 1;
4611a1cf66bbSMatthew G. Knepley   }
4612a1cf66bbSMatthew G. Knepley   /* Get work space */
4613a1cf66bbSMatthew G. Knepley   wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize;
46149566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work));
46159566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(work, wsz));
4616a1cf66bbSMatthew G. Knepley   off      = 0;
4617a1cf66bbSMatthew G. Knepley   u        = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4618a1cf66bbSMatthew G. Knepley   u_t      = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4619a1cf66bbSMatthew G. Knepley   a        = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL;
4620a1cf66bbSMatthew G. Knepley   elemMat  = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4621a1cf66bbSMatthew G. Knepley   elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4622a1cf66bbSMatthew G. Knepley   elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
462363a3b9bcSJacob Faibussowitsch   PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz);
4624a1cf66bbSMatthew G. Knepley   /* Setup geometry */
46259566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
46269566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
46279566063dSJacob Faibussowitsch   if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
4628a1cf66bbSMatthew G. Knepley   if (!qGeom) {
4629a1cf66bbSMatthew G. Knepley     PetscFE fe;
4630a1cf66bbSMatthew G. Knepley 
46319566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
46329566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &qGeom));
46339566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)qGeom));
4634a1cf66bbSMatthew G. Knepley   }
46359566063dSJacob Faibussowitsch   PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
4636a1cf66bbSMatthew G. Knepley   /* Compute volume integrals */
46379566063dSJacob Faibussowitsch   if (assembleJac) PetscCall(MatZeroEntries(J));
46389566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(JP));
46396528b96dSMatthew G. Knepley   key.label = NULL;
46406528b96dSMatthew G. Knepley   key.value = 0;
464106ad1575SMatthew G. Knepley   key.part  = 0;
4642a1cf66bbSMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) {
4643a1cf66bbSMatthew G. Knepley     const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell);
4644a1cf66bbSMatthew G. Knepley     PetscInt       c;
4645a1cf66bbSMatthew G. Knepley 
4646a1cf66bbSMatthew G. Knepley     /* Extract values */
4647a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4648a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4649a1cf66bbSMatthew G. Knepley       PetscScalar   *x = NULL, *x_t = NULL;
4650a1cf66bbSMatthew G. Knepley       PetscInt       i;
4651a1cf66bbSMatthew G. Knepley 
4652a1cf66bbSMatthew G. Knepley       if (X) {
46539566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
4654a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
46559566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
4656a1cf66bbSMatthew G. Knepley       }
4657a1cf66bbSMatthew G. Knepley       if (X_t) {
46589566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
4659a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i];
46609566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
4661a1cf66bbSMatthew G. Knepley       }
4662a1cf66bbSMatthew G. Knepley       if (dmAux) {
46639566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x));
4664a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
46659566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x));
4666a1cf66bbSMatthew G. Knepley       }
4667a1cf66bbSMatthew G. Knepley     }
4668a1cf66bbSMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
4669a1cf66bbSMatthew G. Knepley       PetscFE fe;
46709566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
4671a1cf66bbSMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
46726528b96dSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
46739566063dSJacob Faibussowitsch         if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat));
46749566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP));
46759566063dSJacob Faibussowitsch         if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD));
4676a1cf66bbSMatthew G. Knepley       }
4677a1cf66bbSMatthew G. Knepley       /* For finite volume, add the identity */
4678a1cf66bbSMatthew G. Knepley       if (!isFE[fieldI]) {
4679a1cf66bbSMatthew G. Knepley         PetscFV  fv;
4680a1cf66bbSMatthew G. Knepley         PetscInt eOffset = 0, Nc, fc, foff;
4681a1cf66bbSMatthew G. Knepley 
46829566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff));
46839566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
46849566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &Nc));
4685a1cf66bbSMatthew G. Knepley         for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) {
4686a1cf66bbSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
4687a1cf66bbSMatthew G. Knepley             const PetscInt i = foff + fc;
4688ad540459SPierre Jolivet             if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
4689ad540459SPierre Jolivet             if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0;
4690a1cf66bbSMatthew G. Knepley           }
4691a1cf66bbSMatthew G. Knepley         }
4692a1cf66bbSMatthew G. Knepley       }
4693a1cf66bbSMatthew G. Knepley     }
4694a1cf66bbSMatthew G. Knepley     /*   Add contribution from X_t */
46959371c9d4SSatish Balay     if (hasDyn) {
46969371c9d4SSatish Balay       for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
46979371c9d4SSatish Balay     }
4698a1cf66bbSMatthew G. Knepley     /* Insert values into matrix */
4699a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4700a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4701a1cf66bbSMatthew G. Knepley       if (mesh->printFEM > 1) {
47029566063dSJacob Faibussowitsch         if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim]));
47039566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim]));
4704a1cf66bbSMatthew G. Knepley       }
4705e8e188d2SZach Atkins       if (assembleJac) PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4706e8e188d2SZach Atkins       PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4707a1cf66bbSMatthew G. Knepley     }
4708a1cf66bbSMatthew G. Knepley   }
4709a1cf66bbSMatthew G. Knepley   /* Cleanup */
47109566063dSJacob Faibussowitsch   PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
47119566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&qGeom));
47129566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
47139566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE));
47149566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work));
4715a1cf66bbSMatthew G. Knepley   /* Compute boundary integrals */
47169566063dSJacob Faibussowitsch   /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */
4717a1cf66bbSMatthew G. Knepley   /* Assemble matrix */
47189371c9d4SSatish Balay   if (assembleJac) {
47199371c9d4SSatish Balay     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
47209371c9d4SSatish Balay     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
47219371c9d4SSatish Balay   }
47229371c9d4SSatish Balay   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
47239371c9d4SSatish Balay   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
47249566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
47253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4726a1cf66bbSMatthew G. Knepley }
47273e9753d6SMatthew G. Knepley 
47284ee01570SBarry Smith /* FEM Assembly Function */
47293e9753d6SMatthew G. Knepley 
4730d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy)
4731d71ae5a4SJacob Faibussowitsch {
47323e9753d6SMatthew G. Knepley   PetscBool isPlex;
47333e9753d6SMatthew G. Knepley 
47343e9753d6SMatthew G. Knepley   PetscFunctionBegin;
47359566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
47363e9753d6SMatthew G. Knepley   if (isPlex) {
47373e9753d6SMatthew G. Knepley     *plex = dm;
47389566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
47393e9753d6SMatthew G. Knepley   } else {
47409566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
47413e9753d6SMatthew G. Knepley     if (!*plex) {
47429566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
47439566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
47443e9753d6SMatthew G. Knepley     } else {
47459566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
47463e9753d6SMatthew G. Knepley     }
4747cbf8eb3cSStefano Zampini     if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex));
47483e9753d6SMatthew G. Knepley   }
47493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47503e9753d6SMatthew G. Knepley }
47513e9753d6SMatthew G. Knepley 
47523e9753d6SMatthew G. Knepley /*@
47533e9753d6SMatthew G. Knepley   DMPlexGetGeometryFVM - Return precomputed geometric data
47543e9753d6SMatthew G. Knepley 
475520f4b53cSBarry Smith   Collective
47563e9753d6SMatthew G. Knepley 
47573e9753d6SMatthew G. Knepley   Input Parameter:
4758a1cb98faSBarry Smith . dm - The `DM`
47593e9753d6SMatthew G. Knepley 
47603e9753d6SMatthew G. Knepley   Output Parameters:
47613e9753d6SMatthew G. Knepley + facegeom  - The values precomputed from face geometry
47623e9753d6SMatthew G. Knepley . cellgeom  - The values precomputed from cell geometry
47633e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell
47643e9753d6SMatthew G. Knepley 
47653e9753d6SMatthew G. Knepley   Level: developer
47663e9753d6SMatthew G. Knepley 
47671cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()`
47683e9753d6SMatthew G. Knepley @*/
4769d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius)
4770d71ae5a4SJacob Faibussowitsch {
47713e9753d6SMatthew G. Knepley   DM plex;
47723e9753d6SMatthew G. Knepley 
47733e9753d6SMatthew G. Knepley   PetscFunctionBegin;
47743e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47759566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
47769566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL));
47779566063dSJacob Faibussowitsch   if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius));
47789566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
47793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47803e9753d6SMatthew G. Knepley }
47813e9753d6SMatthew G. Knepley 
47823e9753d6SMatthew G. Knepley /*@
47833e9753d6SMatthew G. Knepley   DMPlexGetGradientDM - Return gradient data layout
47843e9753d6SMatthew G. Knepley 
478520f4b53cSBarry Smith   Collective
47863e9753d6SMatthew G. Knepley 
47873e9753d6SMatthew G. Knepley   Input Parameters:
4788a1cb98faSBarry Smith + dm - The `DM`
478920f4b53cSBarry Smith - fv - The `PetscFV`
47903e9753d6SMatthew G. Knepley 
47913e9753d6SMatthew G. Knepley   Output Parameter:
47923e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values
47933e9753d6SMatthew G. Knepley 
47943e9753d6SMatthew G. Knepley   Level: developer
47953e9753d6SMatthew G. Knepley 
47961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()`
47973e9753d6SMatthew G. Knepley @*/
4798d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad)
4799d71ae5a4SJacob Faibussowitsch {
48003e9753d6SMatthew G. Knepley   DM        plex;
48013e9753d6SMatthew G. Knepley   PetscBool computeGradients;
48023e9753d6SMatthew G. Knepley 
48033e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48043e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48053e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
48064f572ea9SToby Isaac   PetscAssertPointer(dmGrad, 3);
48079566063dSJacob Faibussowitsch   PetscCall(PetscFVGetComputeGradients(fv, &computeGradients));
48089371c9d4SSatish Balay   if (!computeGradients) {
48099371c9d4SSatish Balay     *dmGrad = NULL;
48103ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
48119371c9d4SSatish Balay   }
48129566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
48139566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad));
48149566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
48153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48163e9753d6SMatthew G. Knepley }
48173e9753d6SMatthew G. Knepley 
4818d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS)
4819d71ae5a4SJacob Faibussowitsch {
48203e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
48213e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL;
4822673019faSMatthew G. Knepley   const char     *name = "BdResidual";
48233e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
48243e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
48253e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
48263e9753d6SMatthew G. Knepley   Vec             locA = NULL;
48273e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL;
48283e9753d6SMatthew G. Knepley   PetscInt        totDim, totDimAux = 0;
48293e9753d6SMatthew G. Knepley 
48303e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48319566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
48329566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
48339566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
48349566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
48359566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
48363e9753d6SMatthew G. Knepley   if (locA) {
48373e9753d6SMatthew G. Knepley     DM dmAux;
48383e9753d6SMatthew G. Knepley 
48399566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
48409566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
48419566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
48429566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
48439566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
48449566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
48453e9753d6SMatthew G. Knepley   }
48460c290148SMatthew G. Knepley   {
48473e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
48483e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
48493e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
48503e9753d6SMatthew G. Knepley     IS              pointIS;
48513e9753d6SMatthew G. Knepley     const PetscInt *points;
48523e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
48533e9753d6SMatthew G. Knepley 
48549566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS));
48550c290148SMatthew G. Knepley     if (!pointIS) goto end; /* No points with that id on this process */
48563e9753d6SMatthew G. Knepley     {
48573e9753d6SMatthew G. Knepley       IS isectIS;
48583e9753d6SMatthew G. Knepley 
48593e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
48609566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
48619566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
48623e9753d6SMatthew G. Knepley       pointIS = isectIS;
48633e9753d6SMatthew G. Knepley     }
48649566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
48659566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
486632603206SJames Wright     PetscCall(PetscMalloc4(numFaces * totDim, &u, (locX_t ? (size_t)numFaces * totDim : 0), &u_t, numFaces * totDim, &elemVec, (locA ? (size_t)numFaces * totDimAux : 0), &a));
48679566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
486848a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
48693e9753d6SMatthew G. Knepley     if (!qGeom) {
48703e9753d6SMatthew G. Knepley       PetscFE fe;
48713e9753d6SMatthew G. Knepley 
48729566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
48739566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
48749566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
48753e9753d6SMatthew G. Knepley     }
48769566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
48779566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
48783e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
4879f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
48803e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
4881f15274beSMatthew Knepley       PetscInt       i;
48823e9753d6SMatthew G. Knepley 
48839566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
48849566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
48853e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
48869566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
48873e9753d6SMatthew G. Knepley       if (locX_t) {
48889566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
48893e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
48909566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
48913e9753d6SMatthew G. Knepley       }
48923e9753d6SMatthew G. Knepley       if (locA) {
48933e9753d6SMatthew G. Knepley         PetscInt subp;
48943e9753d6SMatthew G. Knepley 
48959566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
48969566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
48973e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
48989566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
48993e9753d6SMatthew G. Knepley       }
49003e9753d6SMatthew G. Knepley     }
49019566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemVec, numFaces * totDim));
49023e9753d6SMatthew G. Knepley     {
49033e9753d6SMatthew G. Knepley       PetscFE      fe;
49043e9753d6SMatthew G. Knepley       PetscInt     Nb;
49053e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
49063e9753d6SMatthew G. Knepley       /* Conforming batches */
49073e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
49083e9753d6SMatthew G. Knepley       /* Remainder */
49093e9753d6SMatthew G. Knepley       PetscInt Nr, offset;
49103e9753d6SMatthew G. Knepley 
49119566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
49129566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
49139566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
49143e9753d6SMatthew G. Knepley       /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */
49153e9753d6SMatthew G. Knepley       blockSize = Nb;
49163e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
49179566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
49183e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
49193e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
49203e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
49213e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
49229566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
49239566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
49249566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
49259566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
49268e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim]));
49279566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
49283e9753d6SMatthew G. Knepley     }
49293e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
49303e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
49313e9753d6SMatthew G. Knepley 
4932673019faSMatthew G. Knepley       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, name, totDim, &elemVec[face * totDim]));
49339566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
49349566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES));
49353e9753d6SMatthew G. Knepley     }
49369566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
49379566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
49389566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
49399566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
49409566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemVec, a));
49413e9753d6SMatthew G. Knepley   }
49420c290148SMatthew G. Knepley end:
4943673019faSMatthew G. Knepley   if (mesh->printFEM) {
4944673019faSMatthew G. Knepley     PetscSection s;
4945673019faSMatthew G. Knepley     Vec          locFbc;
4946673019faSMatthew G. Knepley     PetscInt     pStart, pEnd, maxDof;
4947673019faSMatthew G. Knepley     PetscScalar *zeroes;
4948673019faSMatthew G. Knepley 
4949673019faSMatthew G. Knepley     PetscCall(DMGetLocalSection(dm, &s));
4950673019faSMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
4951673019faSMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
4952673019faSMatthew G. Knepley     PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
4953673019faSMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(s, &maxDof));
4954673019faSMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
4955673019faSMatthew G. Knepley     for (PetscInt p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, s, p, zeroes, INSERT_BC_VALUES));
4956673019faSMatthew G. Knepley     PetscCall(PetscFree(zeroes));
4957673019faSMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
4958673019faSMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
4959673019faSMatthew G. Knepley   }
49609566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
49619566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
49623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49633e9753d6SMatthew G. Knepley }
49643e9753d6SMatthew G. Knepley 
4965d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF)
4966d71ae5a4SJacob Faibussowitsch {
49673e9753d6SMatthew G. Knepley   DMField  coordField;
49683e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
49693e9753d6SMatthew G. Knepley   IS       facetIS;
49703e9753d6SMatthew G. Knepley   PetscInt dim;
49713e9753d6SMatthew G. Knepley 
49723e9753d6SMatthew G. Knepley   PetscFunctionBegin;
49739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
49749566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
49759566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
49769566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
49779566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
49789566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
49793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49803e9753d6SMatthew G. Knepley }
49813e9753d6SMatthew G. Knepley 
4982a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4983d71ae5a4SJacob Faibussowitsch {
49843e9753d6SMatthew G. Knepley   PetscDS  prob;
49853e9753d6SMatthew G. Knepley   PetscInt numBd, bd;
49863e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
49873e9753d6SMatthew G. Knepley   IS       facetIS    = NULL;
49883e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
49893e9753d6SMatthew G. Knepley   PetscInt dim;
49903e9753d6SMatthew G. Knepley 
49913e9753d6SMatthew G. Knepley   PetscFunctionBegin;
49929566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
49939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
49949566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
49959566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
49969566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
49973e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
499845480ffeSMatthew G. Knepley     PetscWeakForm           wf;
49993e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
50003e9753d6SMatthew G. Knepley     DMLabel                 label;
50013e9753d6SMatthew G. Knepley     const PetscInt         *values;
50020c290148SMatthew G. Knepley     PetscInt                field, numValues, v;
50033e9753d6SMatthew G. Knepley     PetscObject             obj;
50043e9753d6SMatthew G. Knepley     PetscClassId            id;
50050c290148SMatthew G. Knepley     PetscFormKey            key;
50063e9753d6SMatthew G. Knepley 
50079566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL));
50083d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
50099566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
50109566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
50113d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
50123e9753d6SMatthew G. Knepley     if (!facetIS) {
50133e9753d6SMatthew G. Knepley       DMLabel  depthLabel;
50143e9753d6SMatthew G. Knepley       PetscInt dim;
50153e9753d6SMatthew G. Knepley 
50169566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
50179566063dSJacob Faibussowitsch       PetscCall(DMGetDimension(dm, &dim));
50189566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
50193e9753d6SMatthew G. Knepley     }
50209566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
50210c290148SMatthew G. Knepley     for (v = 0; v < numValues; ++v) {
50220c290148SMatthew G. Knepley       key.label = label;
50230c290148SMatthew G. Knepley       key.value = values[v];
50240c290148SMatthew G. Knepley       key.field = field;
50250c290148SMatthew G. Knepley       key.part  = 0;
50269566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
50270c290148SMatthew G. Knepley     }
50283e9753d6SMatthew G. Knepley   }
50299566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
50303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50313e9753d6SMatthew G. Knepley }
50323e9753d6SMatthew G. Knepley 
5033d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5034d71ae5a4SJacob Faibussowitsch {
50353e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
50363e9753d6SMatthew G. Knepley   const char     *name       = "Residual";
50373e9753d6SMatthew G. Knepley   DM              dmAux      = NULL;
50383e9753d6SMatthew G. Knepley   DM              dmGrad     = NULL;
50393e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
50406528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
50416528b96dSMatthew G. Knepley   PetscDS         dsAux      = NULL;
50423e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
50433e9753d6SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
50443e9753d6SMatthew G. Knepley   PetscBool       useFVM     = PETSC_FALSE;
50453e9753d6SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
50463e9753d6SMatthew G. Knepley   PetscFV         fvm        = NULL;
50473e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
50485962854dSMatthew G. Knepley   Vec             locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
50493e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t, *a, *uL, *uR;
50503e9753d6SMatthew G. Knepley   IS              chunkIS;
50513e9753d6SMatthew G. Knepley   const PetscInt *cells;
50523e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
50533e9753d6SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd;
50541690c2aeSBarry Smith   PetscInt        maxDegree  = PETSC_INT_MAX;
50553e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
50563e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
50573e9753d6SMatthew G. Knepley 
50583e9753d6SMatthew G. Knepley   PetscFunctionBegin;
50599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
50603cc88e6aSStefano Zampini   if (!cellIS) goto end;
50613cc88e6aSStefano Zampini   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
50623cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
50633e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
50643e9753d6SMatthew G. Knepley   /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */
50653e9753d6SMatthew G. Knepley   /* FEM+FVM */
50669566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
50673e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
50689566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
50699566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
507007218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL));
50719566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
50729566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
50739566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
50743e9753d6SMatthew G. Knepley   if (locA) {
50753e9753d6SMatthew G. Knepley     PetscInt subcell;
50769566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
50771059d808SMatthew G. Knepley     PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell));
507807218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL));
50799566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
50803e9753d6SMatthew G. Knepley   }
50813e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
50823e9753d6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
50833e9753d6SMatthew G. Knepley     PetscObject  obj;
50843e9753d6SMatthew G. Knepley     PetscClassId id;
50853e9753d6SMatthew G. Knepley     PetscBool    fimp;
50863e9753d6SMatthew G. Knepley 
50879566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(ds, f, &fimp));
50883e9753d6SMatthew G. Knepley     if (isImplicit != fimp) continue;
50899566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(ds, f, &obj));
50909566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
5091ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
50929371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
50939371c9d4SSatish Balay       useFVM = PETSC_TRUE;
50949371c9d4SSatish Balay       fvm    = (PetscFV)obj;
50959371c9d4SSatish Balay     }
50963e9753d6SMatthew G. Knepley   }
50973e9753d6SMatthew G. Knepley   if (useFEM) {
50989566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
50999566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
51003e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
51019566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
510248a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
51033e9753d6SMatthew G. Knepley     } else {
51049566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
51053e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
51063e9753d6SMatthew G. Knepley         PetscObject  obj;
51073e9753d6SMatthew G. Knepley         PetscClassId id;
51083e9753d6SMatthew G. Knepley         PetscBool    fimp;
51093e9753d6SMatthew G. Knepley 
51109566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(ds, f, &fimp));
51113e9753d6SMatthew G. Knepley         if (isImplicit != fimp) continue;
51129566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
51139566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
51143e9753d6SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
51153e9753d6SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
51163e9753d6SMatthew G. Knepley 
51179566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
51189566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
51199566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
51203e9753d6SMatthew G. Knepley         }
51213e9753d6SMatthew G. Knepley       }
51223e9753d6SMatthew G. Knepley     }
51233e9753d6SMatthew G. Knepley   }
51245962854dSMatthew G. Knepley   // Handle non-essential (e.g. outflow) boundary values
51253e9753d6SMatthew G. Knepley   if (useFVM) {
51265962854dSMatthew G. Knepley     PetscCall(DMPlexInsertBoundaryValuesFVM(dm, fvm, locX, time, &locGrad));
51279566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
51289566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad));
51293e9753d6SMatthew G. Knepley   }
51303e9753d6SMatthew G. Knepley   /* Loop over chunks */
51319566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
51323e9753d6SMatthew G. Knepley   numCells      = cEnd - cStart;
51333e9753d6SMatthew G. Knepley   numChunks     = 1;
51343e9753d6SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
51353e9753d6SMatthew G. Knepley   faceChunkSize = (fEnd - fStart) / numChunks;
51363e9753d6SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
51373e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
51383e9753d6SMatthew G. Knepley     PetscScalar     *elemVec, *fluxL, *fluxR;
51393e9753d6SMatthew G. Knepley     PetscReal       *vol;
51403e9753d6SMatthew G. Knepley     PetscFVFaceGeom *fgeom;
51413e9753d6SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
51423e9753d6SMatthew G. Knepley     PetscInt         fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face;
51433e9753d6SMatthew G. Knepley 
51443e9753d6SMatthew G. Knepley     /* Extract field coefficients */
51453e9753d6SMatthew G. Knepley     if (useFEM) {
51469566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
51479566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
51489566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
51499566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
51503e9753d6SMatthew G. Knepley     }
51513e9753d6SMatthew G. Knepley     if (useFVM) {
51529566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
51539566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
51549566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
51559566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
51569566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxL, numFaces * totDim));
51579566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxR, numFaces * totDim));
51583e9753d6SMatthew G. Knepley     }
51593e9753d6SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
51603e9753d6SMatthew G. Knepley     /* Loop over fields */
51613e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
51623e9753d6SMatthew G. Knepley       PetscObject  obj;
51633e9753d6SMatthew G. Knepley       PetscClassId id;
51643e9753d6SMatthew G. Knepley       PetscBool    fimp;
51653e9753d6SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
51663e9753d6SMatthew G. Knepley 
51676528b96dSMatthew G. Knepley       key.field = f;
51689566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(ds, f, &fimp));
51693e9753d6SMatthew G. Knepley       if (isImplicit != fimp) continue;
51709566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, &obj));
51719566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
51723e9753d6SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
51733e9753d6SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
51743e9753d6SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
51753e9753d6SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
51763e9753d6SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
51773e9753d6SMatthew G. Knepley         PetscInt        Nq, Nb;
51783e9753d6SMatthew G. Knepley 
51799566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
51809566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
51819566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
51823e9753d6SMatthew G. Knepley         blockSize = Nb;
51833e9753d6SMatthew G. Knepley         batchSize = numBlocks * blockSize;
51849566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
51853e9753d6SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
51863e9753d6SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
51873e9753d6SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
51883e9753d6SMatthew G. Knepley         offset    = numCells - Nr;
51893e9753d6SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
51903e9753d6SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
51919566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
51929566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec));
51939566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
51948e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim]));
51959566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
51963e9753d6SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
51973e9753d6SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
51983e9753d6SMatthew G. Knepley 
51993e9753d6SMatthew G. Knepley         Ne = numFaces;
52003e9753d6SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
52013e9753d6SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
52029566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
520363a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
52043e9753d6SMatthew G. Knepley     }
52053e9753d6SMatthew G. Knepley     /* Loop over domain */
52063e9753d6SMatthew G. Knepley     if (useFEM) {
52073e9753d6SMatthew G. Knepley       /* Add elemVec to locX */
52083e9753d6SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
52093e9753d6SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
52103e9753d6SMatthew G. Knepley         const PetscInt cind = c - cStart;
52113e9753d6SMatthew G. Knepley 
52129566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
52133e9753d6SMatthew G. Knepley         if (ghostLabel) {
52143e9753d6SMatthew G. Knepley           PetscInt ghostVal;
52153e9753d6SMatthew G. Knepley 
52169566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
52173e9753d6SMatthew G. Knepley           if (ghostVal > 0) continue;
52183e9753d6SMatthew G. Knepley         }
52199566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
52203e9753d6SMatthew G. Knepley       }
52213e9753d6SMatthew G. Knepley     }
52223e9753d6SMatthew G. Knepley     if (useFVM) {
52233e9753d6SMatthew G. Knepley       PetscScalar *fa;
52243e9753d6SMatthew G. Knepley       PetscInt     iface;
52253e9753d6SMatthew G. Knepley 
52269566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
52273e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
52283e9753d6SMatthew G. Knepley         PetscFV      fv;
52293e9753d6SMatthew G. Knepley         PetscObject  obj;
52303e9753d6SMatthew G. Knepley         PetscClassId id;
52315962854dSMatthew G. Knepley         PetscInt     cdim, foff, pdim;
52323e9753d6SMatthew G. Knepley 
52335962854dSMatthew G. Knepley         PetscCall(DMGetCoordinateDim(dm, &cdim));
52349566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
52359566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(ds, f, &foff));
52369566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
52373e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
52383e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
52399566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
52403e9753d6SMatthew G. Knepley         /* Accumulate fluxes to cells */
52413e9753d6SMatthew G. Knepley         for (face = fS, iface = 0; face < fE; ++face) {
52423e9753d6SMatthew G. Knepley           const PetscInt *scells;
52433e9753d6SMatthew G. Knepley           PetscScalar    *fL = NULL, *fR = NULL;
52443e9753d6SMatthew G. Knepley           PetscInt        ghost, d, nsupp, nchild;
52453e9753d6SMatthew G. Knepley 
52469566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
52479566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
52489566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
52493e9753d6SMatthew G. Knepley           if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
52509566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupport(dm, face, &scells));
52519566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost));
52529566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL));
52539566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost));
52549566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR));
52555962854dSMatthew G. Knepley           if (mesh->printFVM > 1) {
52565962854dSMatthew G. Knepley             PetscCall(DMPrintCellVectorReal(face, "Residual: normal", cdim, fgeom[iface].normal));
52575962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: left state", pdim, &uL[iface * totDim + foff]));
52585962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: right state", pdim, &uR[iface * totDim + foff]));
52595962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: left flux", pdim, &fluxL[iface * totDim + foff]));
52605962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: right flux", pdim, &fluxR[iface * totDim + foff]));
52615962854dSMatthew G. Knepley           }
52623e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) {
52633e9753d6SMatthew G. Knepley             if (fL) fL[d] -= fluxL[iface * totDim + foff + d];
52643e9753d6SMatthew G. Knepley             if (fR) fR[d] += fluxR[iface * totDim + foff + d];
52653e9753d6SMatthew G. Knepley           }
52663e9753d6SMatthew G. Knepley           ++iface;
52673e9753d6SMatthew G. Knepley         }
52683e9753d6SMatthew G. Knepley       }
52699566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
52703e9753d6SMatthew G. Knepley     }
52713e9753d6SMatthew G. Knepley     /* Handle time derivative */
52723e9753d6SMatthew G. Knepley     if (locX_t) {
52733e9753d6SMatthew G. Knepley       PetscScalar *x_t, *fa;
52743e9753d6SMatthew G. Knepley 
52759566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
52769566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
52773e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
52783e9753d6SMatthew G. Knepley         PetscFV      fv;
52793e9753d6SMatthew G. Knepley         PetscObject  obj;
52803e9753d6SMatthew G. Knepley         PetscClassId id;
52813e9753d6SMatthew G. Knepley         PetscInt     pdim, d;
52823e9753d6SMatthew G. Knepley 
52839566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
52849566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
52853e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
52863e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
52879566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
52883e9753d6SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
52893e9753d6SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
52903e9753d6SMatthew G. Knepley           PetscScalar   *u_t, *r;
52913e9753d6SMatthew G. Knepley 
52923e9753d6SMatthew G. Knepley           if (ghostLabel) {
52933e9753d6SMatthew G. Knepley             PetscInt ghostVal;
52943e9753d6SMatthew G. Knepley 
52959566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
52963e9753d6SMatthew G. Knepley             if (ghostVal > 0) continue;
52973e9753d6SMatthew G. Knepley           }
52989566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
52999566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
53003e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
53013e9753d6SMatthew G. Knepley         }
53023e9753d6SMatthew G. Knepley       }
53039566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
53049566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
53053e9753d6SMatthew G. Knepley     }
53063e9753d6SMatthew G. Knepley     if (useFEM) {
53079566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
53089566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
53093e9753d6SMatthew G. Knepley     }
53103e9753d6SMatthew G. Knepley     if (useFVM) {
53119566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
53129566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
53139566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
53149566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
53159566063dSJacob Faibussowitsch       if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
53163e9753d6SMatthew G. Knepley     }
53173e9753d6SMatthew G. Knepley   }
53189566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
53199566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
53203e9753d6SMatthew G. Knepley 
53213e9753d6SMatthew G. Knepley   if (useFEM) {
53229566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user));
53233e9753d6SMatthew G. Knepley 
53243e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
53259566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
53269566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
53273e9753d6SMatthew G. Knepley     } else {
53283e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
53299566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
53309566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
53313e9753d6SMatthew G. Knepley       }
53329566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
53333e9753d6SMatthew G. Knepley     }
53343e9753d6SMatthew G. Knepley   }
53353e9753d6SMatthew G. Knepley 
53363e9753d6SMatthew G. Knepley   /* FEM */
53373e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
53383e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
53393e9753d6SMatthew G. Knepley   /* 3: Handle boundary values */
53403e9753d6SMatthew G. Knepley   /* 4: Loop over domain */
53413e9753d6SMatthew G. Knepley   /*   Extract coefficients */
53423e9753d6SMatthew G. Knepley   /* Loop over fields */
53433e9753d6SMatthew G. Knepley   /*   Set tiling for FE*/
53443e9753d6SMatthew G. Knepley   /*   Integrate FE residual to get elemVec */
53453e9753d6SMatthew G. Knepley   /*     Loop over subdomain */
53463e9753d6SMatthew G. Knepley   /*       Loop over quad points */
53473e9753d6SMatthew G. Knepley   /*         Transform coords to real space */
53483e9753d6SMatthew G. Knepley   /*         Evaluate field and aux fields at point */
53493e9753d6SMatthew G. Knepley   /*         Evaluate residual at point */
53503e9753d6SMatthew G. Knepley   /*         Transform residual to real space */
53513e9753d6SMatthew G. Knepley   /*       Add residual to elemVec */
53523e9753d6SMatthew G. Knepley   /* Loop over domain */
53533e9753d6SMatthew G. Knepley   /*   Add elemVec to locX */
53543e9753d6SMatthew G. Knepley 
53553e9753d6SMatthew G. Knepley   /* FVM */
53563e9753d6SMatthew G. Knepley   /* Get geometric data */
53573e9753d6SMatthew G. Knepley   /* If using gradients */
53583e9753d6SMatthew G. Knepley   /*   Compute gradient data */
53593e9753d6SMatthew G. Knepley   /*   Loop over domain faces */
53603e9753d6SMatthew G. Knepley   /*     Count computational faces */
53613e9753d6SMatthew G. Knepley   /*     Reconstruct cell gradient */
53623e9753d6SMatthew G. Knepley   /*   Loop over domain cells */
53633e9753d6SMatthew G. Knepley   /*     Limit cell gradients */
53643e9753d6SMatthew G. Knepley   /* Handle boundary values */
53653e9753d6SMatthew G. Knepley   /* Loop over domain faces */
53663e9753d6SMatthew G. Knepley   /*   Read out field, centroid, normal, volume for each side of face */
53673e9753d6SMatthew G. Knepley   /* Riemann solve over faces */
53683e9753d6SMatthew G. Knepley   /* Loop over domain faces */
53693e9753d6SMatthew G. Knepley   /*   Accumulate fluxes to cells */
53703e9753d6SMatthew G. Knepley   /* TODO Change printFEM to printDisc here */
53713e9753d6SMatthew G. Knepley   if (mesh->printFEM) {
53723e9753d6SMatthew G. Knepley     Vec          locFbc;
53733e9753d6SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
53743e9753d6SMatthew G. Knepley     PetscScalar *zeroes;
53753e9753d6SMatthew G. Knepley 
53769566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(locF, &locFbc));
53779566063dSJacob Faibussowitsch     PetscCall(VecCopy(locF, locFbc));
53789566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
53799566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
53809566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(maxDof, &zeroes));
538148a46eb9SPierre Jolivet     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
53829566063dSJacob Faibussowitsch     PetscCall(PetscFree(zeroes));
53839566063dSJacob Faibussowitsch     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
53849566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&locFbc));
53853e9753d6SMatthew G. Knepley   }
53863cc88e6aSStefano Zampini end:
53879566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
53883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
53893e9753d6SMatthew G. Knepley }
53903e9753d6SMatthew G. Knepley 
53916528b96dSMatthew G. Knepley /*
53926528b96dSMatthew G. Knepley   1) Allow multiple kernels for BdResidual for hybrid DS
53936528b96dSMatthew G. Knepley 
53946528b96dSMatthew G. Knepley   DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux
53956528b96dSMatthew G. Knepley 
53966528b96dSMatthew G. Knepley   DONE 3) Change DMGetCellFields() to get different aux data a[] for each side
53976528b96dSMatthew G. Knepley      - I think I just need to replace a[] with the closure from each face
53986528b96dSMatthew G. Knepley 
53996528b96dSMatthew G. Knepley   4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before
54006528b96dSMatthew G. Knepley */
5401d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5402d71ae5a4SJacob Faibussowitsch {
54033e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
54043e9753d6SMatthew G. Knepley   const char     *name       = "Hybrid Residual";
540504c51a94SMatthew G. Knepley   DM              dmAux[3]   = {NULL, NULL, NULL};
54063e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
54076528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
540807218a29SMatthew G. Knepley   PetscDS         dsIn       = NULL;
54096528b96dSMatthew G. Knepley   PetscDS         dsAux[3]   = {NULL, NULL, NULL};
541004c51a94SMatthew G. Knepley   Vec             locA[3]    = {NULL, NULL, NULL};
541107218a29SMatthew G. Knepley   DM              dmScale[3] = {NULL, NULL, NULL};
541207218a29SMatthew G. Knepley   PetscDS         dsScale[3] = {NULL, NULL, NULL};
541307218a29SMatthew G. Knepley   Vec             locS[3]    = {NULL, NULL, NULL};
54143e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
54153e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
541607218a29SMatthew G. Knepley   PetscScalar    *a[3]       = {NULL, NULL, NULL};
541707218a29SMatthew G. Knepley   PetscScalar    *s[3]       = {NULL, NULL, NULL};
5418b2ab40e6SMatthew G. Knepley   PetscScalar    *u          = NULL, *u_t;
541907218a29SMatthew G. Knepley   PetscScalar    *elemVecNeg, *elemVecPos, *elemVecCoh;
54203e9753d6SMatthew G. Knepley   IS              chunkIS;
54213e9753d6SMatthew G. Knepley   const PetscInt *cells;
54223e9753d6SMatthew G. Knepley   PetscInt       *faces;
54233e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
54243e2b0218SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
54251690c2aeSBarry Smith   PetscInt        maxDegree  = PETSC_INT_MAX;
54263e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
54273e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
54283e9753d6SMatthew G. Knepley 
54293e9753d6SMatthew G. Knepley   PetscFunctionBegin;
54303cc88e6aSStefano Zampini   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
54313cc88e6aSStefano Zampini   if (!cellIS) goto end;
5432437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5433437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
54343cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
54355fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
54365fedec97SMatthew G. Knepley     const char *name;
54379566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
543863a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
54395fedec97SMatthew G. Knepley   }
54403e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
54413e9753d6SMatthew G. Knepley   /* FEM */
54423e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
5443b98a7184SJames Wright   PetscCall(DMGetLocalSection(dm, &section));
54449566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
544507218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
54469566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
54479566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
544807218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
54499566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
545004c51a94SMatthew G. Knepley   if (locA[2]) {
54511059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
54521059d808SMatthew G. Knepley 
54539566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
545407218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
54559566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
54566528b96dSMatthew G. Knepley     {
54576528b96dSMatthew G. Knepley       const PetscInt *cone;
54586528b96dSMatthew G. Knepley       PetscInt        c;
54596528b96dSMatthew G. Knepley 
54601059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
54616528b96dSMatthew G. Knepley       for (c = 0; c < 2; ++c) {
54626528b96dSMatthew G. Knepley         const PetscInt *support;
54636528b96dSMatthew G. Knepley         PetscInt        ssize, s;
54646528b96dSMatthew G. Knepley 
54659566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
54669566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
54671059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
54681059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
54691059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
54701059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
54719566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
5472c75bfeddSPierre Jolivet         PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part);
54739566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5474ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
547507218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
54769566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
54776528b96dSMatthew G. Knepley       }
54786528b96dSMatthew G. Knepley     }
54793e9753d6SMatthew G. Knepley   }
548007218a29SMatthew G. Knepley   /* Handle mass matrix scaling
548107218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
548207218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
548307218a29SMatthew G. Knepley   if (locS[2]) {
54843e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
548507218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
548607218a29SMatthew G. Knepley 
548707218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
54883e2b0218SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL));
54893e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
549007218a29SMatthew G. Knepley     // BRAD: This is not set correctly
549107218a29SMatthew G. Knepley     key[2].field = 2;
549207218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
549307218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
549407218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
54953e2b0218SMatthew G. Knepley     {
54963e2b0218SMatthew G. Knepley       const PetscInt *cone;
54973e2b0218SMatthew G. Knepley       PetscInt        c;
54983e2b0218SMatthew G. Knepley 
54993e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
55003e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
55013e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
55023e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
55033e2b0218SMatthew G. Knepley         const PetscInt *support;
55043e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
55053e2b0218SMatthew G. Knepley 
55063e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
55073e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
55083e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
55093e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
55103e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
55113e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
55123e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
55133e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
55143e2b0218SMatthew G. Knepley       }
55153e2b0218SMatthew G. Knepley     }
551607218a29SMatthew G. Knepley   }
55173e9753d6SMatthew G. Knepley   /* 2: Setup geometric data */
55189566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
55199566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
55203e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
55219566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
55223e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
55233e9753d6SMatthew G. Knepley       PetscFE fe;
55243e9753d6SMatthew G. Knepley 
55259566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
55263e9753d6SMatthew G. Knepley       if (fe) {
55279566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
55289566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
55293e9753d6SMatthew G. Knepley       }
55303e9753d6SMatthew G. Knepley     }
55313e9753d6SMatthew G. Knepley   }
55323e9753d6SMatthew G. Knepley   /* Loop over chunks */
55333e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
55343e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
553507218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
553607218a29SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
55373e9753d6SMatthew G. Knepley   /* Extract field coefficients */
55383e9753d6SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
553907218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
554007218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
55413e2b0218SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
554207218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg));
554307218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos));
554407218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh));
55453e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
55463e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
55473e9753d6SMatthew G. Knepley 
554807218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim));
554907218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim));
555007218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim));
55513e9753d6SMatthew G. Knepley     /* Get faces */
55523e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
55533e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
55543e9753d6SMatthew G. Knepley       const PetscInt *cone;
55559566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, cell, &cone));
555607218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
555707218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
55583e9753d6SMatthew G. Knepley     }
555907218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
55603e9753d6SMatthew G. Knepley     /* Get geometric data */
55613e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
55629566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
55639566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
55643e9753d6SMatthew G. Knepley     } else {
55653e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
55669566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
55673e9753d6SMatthew G. Knepley       }
55683e9753d6SMatthew G. Knepley     }
55693e9753d6SMatthew G. Knepley     /* Loop over fields */
55703e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
55713e9753d6SMatthew G. Knepley       PetscFE         fe;
55723e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
5573148442b3SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
55743e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[f];
55753e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
55765fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
55773e9753d6SMatthew G. Knepley 
55789566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
55793e9753d6SMatthew G. Knepley       if (!fe) continue;
55809566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
55819566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
55829566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
55833e9753d6SMatthew G. Knepley       blockSize = Nb;
55843e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
55859566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
55863e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
55873e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
55883e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
55893e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
559007218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
559107218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
55929566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
55935fedec97SMatthew G. Knepley       chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE;
55946528b96dSMatthew G. Knepley       key[0].field                                = f;
55956528b96dSMatthew G. Knepley       key[1].field                                = f;
55965fedec97SMatthew G. Knepley       key[2].field                                = f;
559707218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVecNeg));
55988e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, &elemVecNeg[offset * totDim]));
559907218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVecPos));
56008e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, &elemVecPos[offset * totDim]));
560107218a29SMatthew G. Knepley       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVecCoh));
56028e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, &elemVecCoh[offset * totDim]));
56039566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
56049566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
56053e9753d6SMatthew G. Knepley     }
56063e9753d6SMatthew G. Knepley     /* Add elemVec to locX */
56073e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
56083e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
56093e9753d6SMatthew G. Knepley       const PetscInt cind = c - cStart;
561007218a29SMatthew G. Knepley       PetscInt       i;
56113e9753d6SMatthew G. Knepley 
561207218a29SMatthew G. Knepley       /* Scale element values */
561307218a29SMatthew G. Knepley       if (locS[0]) {
56143e2b0218SMatthew G. Knepley         PetscInt  Nb, off = cind * totDim, soff = cind * totDimScale[0];
561507218a29SMatthew G. Knepley         PetscBool cohesive;
561607218a29SMatthew G. Knepley 
561707218a29SMatthew G. Knepley         for (f = 0; f < Nf; ++f) {
561807218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, f, &Nb));
561907218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
562007218a29SMatthew G. Knepley           if (f == key[2].field) {
562107218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
562207218a29SMatthew G. Knepley             // No cohesive scaling field is currently input
562307218a29SMatthew G. Knepley             for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i];
562407218a29SMatthew G. Knepley             off += Nb;
562507218a29SMatthew G. Knepley           } else {
562607218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
562707218a29SMatthew G. Knepley 
562807218a29SMatthew G. Knepley             for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i];
562907218a29SMatthew G. Knepley             off += N;
563007218a29SMatthew G. Knepley           }
563107218a29SMatthew G. Knepley         }
563207218a29SMatthew G. Knepley       } else {
563307218a29SMatthew G. Knepley         for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i];
563407218a29SMatthew G. Knepley       }
563507218a29SMatthew G. Knepley       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim]));
56363e9753d6SMatthew G. Knepley       if (ghostLabel) {
56373e9753d6SMatthew G. Knepley         PetscInt ghostVal;
56383e9753d6SMatthew G. Knepley 
56399566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
56403e9753d6SMatthew G. Knepley         if (ghostVal > 0) continue;
56413e9753d6SMatthew G. Knepley       }
564207218a29SMatthew G. Knepley       PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES));
56433e9753d6SMatthew G. Knepley     }
56443e9753d6SMatthew G. Knepley   }
56459566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
564607218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
56473e2b0218SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
564807218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg));
564907218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos));
565007218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh));
56519566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
56529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
56539566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
56543e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
56559566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
56569566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
56573e9753d6SMatthew G. Knepley   } else {
56583e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
56599566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
56609566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
56613e9753d6SMatthew G. Knepley     }
56629566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
56633e9753d6SMatthew G. Knepley   }
566485cc2951SMatthew G. Knepley   if (mesh->printFEM) {
566585cc2951SMatthew G. Knepley     Vec          locFbc;
566685cc2951SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
566785cc2951SMatthew G. Knepley     PetscScalar *zeroes;
566885cc2951SMatthew G. Knepley 
566985cc2951SMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
567085cc2951SMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
567185cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
567285cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
567385cc2951SMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
567485cc2951SMatthew G. Knepley     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
567585cc2951SMatthew G. Knepley     PetscCall(PetscFree(zeroes));
567685cc2951SMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
567785cc2951SMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
567885cc2951SMatthew G. Knepley   }
56793cc88e6aSStefano Zampini end:
56809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
56813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56823e9753d6SMatthew G. Knepley }
56833e9753d6SMatthew G. Knepley 
5684a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS)
5685d71ae5a4SJacob Faibussowitsch {
56863e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
56873e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL, tdm;
56883e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
5689be62b2b4SMatthew G. Knepley   PetscDS         ds, dsAux           = NULL;
56903e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
5691e432b41dSStefano Zampini   PetscSection    globalSection;
56923e9753d6SMatthew G. Knepley   Vec             locA = NULL, tv;
5693be62b2b4SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL;
56943e9753d6SMatthew G. Knepley   PetscInt        v;
56953e9753d6SMatthew G. Knepley   PetscInt        Nf, totDim, totDimAux = 0;
5696be62b2b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, transform;
56973e9753d6SMatthew G. Knepley 
56983e9753d6SMatthew G. Knepley   PetscFunctionBegin;
56999566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
57009566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
57019566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
57029566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
5703be62b2b4SMatthew G. Knepley   PetscCall(DMGetDS(dm, &ds));
5704be62b2b4SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(ds, &Nf));
5705be62b2b4SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
570621a4fad8SMatthew G. Knepley   PetscCall(PetscWeakFormHasBdJacobian(wf, &hasJac));
570721a4fad8SMatthew G. Knepley   PetscCall(PetscWeakFormHasBdJacobianPreconditioner(wf, &hasPrec));
570821a4fad8SMatthew G. Knepley   if (!hasJac && !hasPrec) PetscFunctionReturn(PETSC_SUCCESS);
570921a4fad8SMatthew G. Knepley   PetscCall(DMConvert(dm, DMPLEX, &plex));
57109566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA));
57113e9753d6SMatthew G. Knepley   if (locA) {
57123e9753d6SMatthew G. Knepley     DM dmAux;
57133e9753d6SMatthew G. Knepley 
57149566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
57159566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
57169566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
5717be62b2b4SMatthew G. Knepley     PetscCall(DMGetDS(plexA, &dsAux));
5718be62b2b4SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
57199566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
57203e9753d6SMatthew G. Knepley   }
57213e9753d6SMatthew G. Knepley 
57229566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
57233e9753d6SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
57243e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
57253e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
57263e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
57273e9753d6SMatthew G. Knepley     IS              pointIS;
57283e9753d6SMatthew G. Knepley     const PetscInt *points;
572906ad1575SMatthew G. Knepley     PetscFormKey    key;
57303e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
57313e9753d6SMatthew G. Knepley 
573245480ffeSMatthew G. Knepley     key.label = label;
573345480ffeSMatthew G. Knepley     key.value = values[v];
573406ad1575SMatthew G. Knepley     key.part  = 0;
57359566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
57363e9753d6SMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
57373e9753d6SMatthew G. Knepley     {
57383e9753d6SMatthew G. Knepley       IS isectIS;
57393e9753d6SMatthew G. Knepley 
57403e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */
57419566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
57429566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
57433e9753d6SMatthew G. Knepley       pointIS = isectIS;
57443e9753d6SMatthew G. Knepley     }
57459566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
57469566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
574732603206SJames Wright     PetscCall(PetscMalloc5(numFaces * totDim, &u, (locX_t ? (size_t)numFaces * totDim : 0), &u_t, (hasJac ? (size_t)numFaces * totDim * totDim : 0), &elemMat, (hasPrec ? (size_t)numFaces * totDim * totDim : 0), &elemMatP, (locA ? (size_t)numFaces * totDimAux : 0), &a));
57489566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
574948a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
57503e9753d6SMatthew G. Knepley     if (!qGeom) {
57513e9753d6SMatthew G. Knepley       PetscFE fe;
57523e9753d6SMatthew G. Knepley 
5753be62b2b4SMatthew G. Knepley       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe));
57549566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
57559566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
57563e9753d6SMatthew G. Knepley     }
57579566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
57589566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
57593e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
5760f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
57613e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
5762f15274beSMatthew Knepley       PetscInt       i;
57633e9753d6SMatthew G. Knepley 
57649566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
57659566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
57663e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
57679566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
57683e9753d6SMatthew G. Knepley       if (locX_t) {
57699566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
57703e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
57719566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
57723e9753d6SMatthew G. Knepley       }
57733e9753d6SMatthew G. Knepley       if (locA) {
57743e9753d6SMatthew G. Knepley         PetscInt subp;
57759566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
57769566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
57773e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
57789566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
57793e9753d6SMatthew G. Knepley       }
57803e9753d6SMatthew G. Knepley     }
578121a4fad8SMatthew G. Knepley     if (elemMat) PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim));
578221a4fad8SMatthew G. Knepley     if (elemMatP) PetscCall(PetscArrayzero(elemMatP, numFaces * totDim * totDim));
57833e9753d6SMatthew G. Knepley     {
57843e9753d6SMatthew G. Knepley       PetscFE  fe;
57853e9753d6SMatthew G. Knepley       PetscInt Nb;
57863e9753d6SMatthew G. Knepley       /* Conforming batches */
57873e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
57883e9753d6SMatthew G. Knepley       /* Remainder */
57893e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
57903e9753d6SMatthew G. Knepley       PetscInt     fieldJ, Nr, offset;
57913e9753d6SMatthew G. Knepley 
5792be62b2b4SMatthew G. Knepley       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe));
57939566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
57949566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
57953e9753d6SMatthew G. Knepley       blockSize = Nb;
57963e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
57979566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
57983e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
57993e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
58003e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
58013e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
58029566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
58033e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
580445480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
5805be62b2b4SMatthew G. Knepley         if (hasJac) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMat));
5806be62b2b4SMatthew G. Knepley         if (hasPrec) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMatP));
58073e9753d6SMatthew G. Knepley       }
58089566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
58093e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
581045480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
5811be62b2b4SMatthew G. Knepley         if (hasJac)
58128e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
5813be62b2b4SMatthew G. Knepley         if (hasPrec)
58148e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim]));
58153e9753d6SMatthew G. Knepley       }
58169566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
58173e9753d6SMatthew G. Knepley     }
58183e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
58193e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
58203e9753d6SMatthew G. Knepley 
58213e9753d6SMatthew G. Knepley       /* Transform to global basis before insertion in Jacobian */
58229566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
582321a4fad8SMatthew G. Knepley       if (hasJac && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim]));
582421a4fad8SMatthew G. Knepley       if (hasPrec && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMatP[face * totDim * totDim]));
5825be62b2b4SMatthew G. Knepley       if (hasPrec) {
5826be62b2b4SMatthew G. Knepley         if (hasJac) {
58279566063dSJacob Faibussowitsch           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
582821a4fad8SMatthew G. Knepley           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
58293e9753d6SMatthew G. Knepley         }
5830be62b2b4SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMatP[face * totDim * totDim]));
5831be62b2b4SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMatP[face * totDim * totDim], ADD_VALUES));
5832be62b2b4SMatthew G. Knepley       } else {
5833be62b2b4SMatthew G. Knepley         if (hasJac) {
5834be62b2b4SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
583521a4fad8SMatthew G. Knepley           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
5836be62b2b4SMatthew G. Knepley         }
5837be62b2b4SMatthew G. Knepley       }
5838be62b2b4SMatthew G. Knepley     }
58399566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
58409566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
58419566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
58429566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
5843be62b2b4SMatthew G. Knepley     PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, a));
58443e9753d6SMatthew G. Knepley   }
58459566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
58469566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
58473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58483e9753d6SMatthew G. Knepley }
58493e9753d6SMatthew G. Knepley 
5850d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP)
5851d71ae5a4SJacob Faibussowitsch {
58523e9753d6SMatthew G. Knepley   DMField  coordField;
58533e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
58543e9753d6SMatthew G. Knepley   IS       facetIS;
58553e9753d6SMatthew G. Knepley   PetscInt dim;
58563e9753d6SMatthew G. Knepley 
58573e9753d6SMatthew G. Knepley   PetscFunctionBegin;
58589566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58599566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
58609566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
58619566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
58629566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
58639566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
58643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58653e9753d6SMatthew G. Knepley }
58663e9753d6SMatthew G. Knepley 
5867a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user)
5868d71ae5a4SJacob Faibussowitsch {
58693e9753d6SMatthew G. Knepley   PetscDS  prob;
58703e9753d6SMatthew G. Knepley   PetscInt dim, numBd, bd;
58713e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
58723e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
58733e9753d6SMatthew G. Knepley   IS       facetIS;
58743e9753d6SMatthew G. Knepley 
58753e9753d6SMatthew G. Knepley   PetscFunctionBegin;
58769566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
58779566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
58789566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58799566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
58809566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
58819566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
58823e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
588345480ffeSMatthew G. Knepley     PetscWeakForm           wf;
58843e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
58853e9753d6SMatthew G. Knepley     DMLabel                 label;
58863e9753d6SMatthew G. Knepley     const PetscInt         *values;
58873e9753d6SMatthew G. Knepley     PetscInt                fieldI, numValues;
58883e9753d6SMatthew G. Knepley     PetscObject             obj;
58893e9753d6SMatthew G. Knepley     PetscClassId            id;
58903e9753d6SMatthew G. Knepley 
58919566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL));
58923d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
58939566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj));
58949566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
58953d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
58969566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
58973e9753d6SMatthew G. Knepley   }
58989566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
58993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59003e9753d6SMatthew G. Knepley }
59013e9753d6SMatthew G. Knepley 
5902d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user)
5903d71ae5a4SJacob Faibussowitsch {
59043e9753d6SMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
59053e9753d6SMatthew G. Knepley   const char     *name  = "Jacobian";
59069a2a23afSMatthew G. Knepley   DM              dmAux = NULL, plex, tdm;
59073e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
59083e9753d6SMatthew G. Knepley   Vec             A, tv;
59093e9753d6SMatthew G. Knepley   DMField         coordField;
59103e9753d6SMatthew G. Knepley   PetscDS         prob, probAux = NULL;
5911e432b41dSStefano Zampini   PetscSection    section, globalSection, sectionAux;
59123e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL;
59133e9753d6SMatthew G. Knepley   const PetscInt *cells;
59143e9753d6SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
591528351e22SJed Brown   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
5916e04ae0b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform;
59173e9753d6SMatthew G. Knepley 
59183e9753d6SMatthew G. Knepley   PetscFunctionBegin;
5919af18b51aSmarkadams4   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
5920ae3cf2c1SStefano Zampini   PetscCall(DMGetLocalSection(dm, &section));
5921ae3cf2c1SStefano Zampini   PetscCall(DMGetGlobalSection(dm, &globalSection));
5922ae3cf2c1SStefano Zampini   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
5923ae3cf2c1SStefano Zampini   if (A) {
5924ae3cf2c1SStefano Zampini     PetscCall(VecGetDM(A, &dmAux));
5925ae3cf2c1SStefano Zampini     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
5926ae3cf2c1SStefano Zampini     PetscCall(DMConvert(dmAux, DMPLEX, &plex));
5927ae3cf2c1SStefano Zampini     PetscCall(DMGetLocalSection(plex, &sectionAux));
5928ae3cf2c1SStefano Zampini     PetscCall(DMGetDS(dmAux, &probAux));
5929ae3cf2c1SStefano Zampini     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
5930ae3cf2c1SStefano Zampini   }
5931ae3cf2c1SStefano Zampini   PetscCall(DMGetCoordinateField(dm, &coordField));
5932e04ae0b4SMatthew G. Knepley   if (!cellIS) goto end;
59339566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5934437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
5935437e83fbSMatthew G. Knepley   if (cStart >= cEnd) goto end;
59369566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
59379566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
59389566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
593907218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
59409566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
59419566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
59429566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
59439566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
59443e9753d6SMatthew G. Knepley   /* user passed in the same matrix, avoid double contributions and
59453e9753d6SMatthew G. Knepley      only assemble the Jacobian */
59463e9753d6SMatthew G. Knepley   if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE;
59479566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
59483e9753d6SMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
594932603206SJames Wright   PetscCall(PetscMalloc5(numCells * totDim, &u, (X_t ? (size_t)numCells * totDim : 0), &u_t, (hasJac ? (size_t)numCells * totDim * totDim : 0), &elemMat, (hasPrec ? (size_t)numCells * totDim * totDim : 0), &elemMatP, (hasDyn ? (size_t)numCells * totDim * totDim : 0), &elemMatD));
59509566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
59513e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
59523e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
59533e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
59543e9753d6SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
59553e9753d6SMatthew G. Knepley     PetscInt       i;
59563e9753d6SMatthew G. Knepley 
59579566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
59583e9753d6SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
59599566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
59603e9753d6SMatthew G. Knepley     if (X_t) {
59619566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
59623e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
59639566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
59643e9753d6SMatthew G. Knepley     }
59653e9753d6SMatthew G. Knepley     if (dmAux) {
59663e9753d6SMatthew G. Knepley       PetscInt subcell;
59679566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
59689566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x));
59693e9753d6SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
59709566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x));
59713e9753d6SMatthew G. Knepley     }
59723e9753d6SMatthew G. Knepley   }
59739566063dSJacob Faibussowitsch   if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
59749566063dSJacob Faibussowitsch   if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim));
59759566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
59763e9753d6SMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
59773e9753d6SMatthew G. Knepley     PetscClassId    id;
59783e9753d6SMatthew G. Knepley     PetscFE         fe;
59793e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
59803e9753d6SMatthew G. Knepley     PetscInt        Nb;
59813e9753d6SMatthew G. Knepley     /* Conforming batches */
59823e9753d6SMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
59833e9753d6SMatthew G. Knepley     /* Remainder */
59843e9753d6SMatthew G. Knepley     PetscInt     Nr, offset, Nq;
59853e9753d6SMatthew G. Knepley     PetscInt     maxDegree;
59863e9753d6SMatthew G. Knepley     PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
59873e9753d6SMatthew G. Knepley 
59889566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
59899566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId((PetscObject)fe, &id));
59909371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
59919371c9d4SSatish Balay       hasFV = PETSC_TRUE;
59929371c9d4SSatish Balay       continue;
59939371c9d4SSatish Balay     }
59949566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
59959566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
59969566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
599748a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
59983e9753d6SMatthew G. Knepley     if (!qGeom) {
59999566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
60009566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
60013e9753d6SMatthew G. Knepley     }
60029566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
60039566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
60043e9753d6SMatthew G. Knepley     blockSize = Nb;
60053e9753d6SMatthew G. Knepley     batchSize = numBlocks * blockSize;
60069566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
60073e9753d6SMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
60083e9753d6SMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
60093e9753d6SMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
60103e9753d6SMatthew G. Knepley     offset    = numCells - Nr;
60119566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
60129566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
60133e9753d6SMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
60146528b96dSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
60153e9753d6SMatthew G. Knepley       if (hasJac) {
60169566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
60178e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
60183e9753d6SMatthew G. Knepley       }
60193e9753d6SMatthew G. Knepley       if (hasPrec) {
60209566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP));
60218e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim]));
60223e9753d6SMatthew G. Knepley       }
60233e9753d6SMatthew G. Knepley       if (hasDyn) {
60249566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
60258e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatD[offset * totDim * totDim]));
60263e9753d6SMatthew G. Knepley       }
60273e9753d6SMatthew G. Knepley     }
60289566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
60299566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
60309566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
60319566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
60323e9753d6SMatthew G. Knepley   }
60333e9753d6SMatthew G. Knepley   /*   Add contribution from X_t */
60349371c9d4SSatish Balay   if (hasDyn) {
60359371c9d4SSatish Balay     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
60369371c9d4SSatish Balay   }
60373e9753d6SMatthew G. Knepley   if (hasFV) {
60383e9753d6SMatthew G. Knepley     PetscClassId id;
60393e9753d6SMatthew G. Knepley     PetscFV      fv;
60403e9753d6SMatthew G. Knepley     PetscInt     offsetI, NcI, NbI = 1, fc, f;
60413e9753d6SMatthew G. Knepley 
60423e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
60439566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
60449566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI));
60459566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId((PetscObject)fv, &id));
60463e9753d6SMatthew G. Knepley       if (id != PETSCFV_CLASSID) continue;
60472f86f8c5SMatthew G. Knepley       /* Put in the weighted identity */
60489566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &NcI));
60493e9753d6SMatthew G. Knepley       for (c = cStart; c < cEnd; ++c) {
60503e9753d6SMatthew G. Knepley         const PetscInt cind    = c - cStart;
60513e9753d6SMatthew G. Knepley         const PetscInt eOffset = cind * totDim * totDim;
60522f86f8c5SMatthew G. Knepley         PetscReal      vol;
60532f86f8c5SMatthew G. Knepley 
60542f86f8c5SMatthew G. Knepley         PetscCall(DMPlexComputeCellGeometryFVM(dm, c, &vol, NULL, NULL));
60553e9753d6SMatthew G. Knepley         for (fc = 0; fc < NcI; ++fc) {
60563e9753d6SMatthew G. Knepley           for (f = 0; f < NbI; ++f) {
60573e9753d6SMatthew G. Knepley             const PetscInt i = offsetI + f * NcI + fc;
60583e9753d6SMatthew G. Knepley             if (hasPrec) {
60592f86f8c5SMatthew G. Knepley               if (hasJac) elemMat[eOffset + i * totDim + i] = vol;
60602f86f8c5SMatthew G. Knepley               elemMatP[eOffset + i * totDim + i] = vol;
60619371c9d4SSatish Balay             } else {
60622f86f8c5SMatthew G. Knepley               elemMat[eOffset + i * totDim + i] = vol;
60639371c9d4SSatish Balay             }
60643e9753d6SMatthew G. Knepley           }
60653e9753d6SMatthew G. Knepley         }
60663e9753d6SMatthew G. Knepley       }
60673e9753d6SMatthew G. Knepley     }
60683e9753d6SMatthew G. Knepley     /* No allocated space for FV stuff, so ignore the zero entries */
60699566063dSJacob Faibussowitsch     PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE));
60703e9753d6SMatthew G. Knepley   }
60713e9753d6SMatthew G. Knepley   /* Insert values into matrix */
60723e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
60733e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
60743e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
60753e9753d6SMatthew G. Knepley 
60763e9753d6SMatthew G. Knepley     /* Transform to global basis before insertion in Jacobian */
60779566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim]));
60783e9753d6SMatthew G. Knepley     if (hasPrec) {
60793e9753d6SMatthew G. Knepley       if (hasJac) {
60809566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
6081e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
60823e9753d6SMatthew G. Knepley       }
60839566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
6084be62b2b4SMatthew G. Knepley       PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
60853e9753d6SMatthew G. Knepley     } else {
60863e9753d6SMatthew G. Knepley       if (hasJac) {
60879566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
6088e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
60893e9753d6SMatthew G. Knepley       }
60903e9753d6SMatthew G. Knepley     }
60913e9753d6SMatthew G. Knepley   }
60929566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
60939566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
60949566063dSJacob Faibussowitsch   PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD));
60953e9753d6SMatthew G. Knepley   if (dmAux) {
60969566063dSJacob Faibussowitsch     PetscCall(PetscFree(a));
60979566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
60983e9753d6SMatthew G. Knepley   }
60993e9753d6SMatthew G. Knepley   /* Compute boundary integrals */
61009566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user));
61013e9753d6SMatthew G. Knepley   /* Assemble matrix */
61029371c9d4SSatish Balay end: {
6103e04ae0b4SMatthew G. Knepley   PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp;
6104e04ae0b4SMatthew G. Knepley 
6105462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
61063e9753d6SMatthew G. Knepley   if (hasJac && hasPrec) {
61079566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
61089566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
61093e9753d6SMatthew G. Knepley   }
6110e04ae0b4SMatthew G. Knepley }
61119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
61129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
61139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
61143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61153e9753d6SMatthew G. Knepley }
61163e9753d6SMatthew G. Knepley 
6117d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user)
6118d71ae5a4SJacob Faibussowitsch {
61193e9753d6SMatthew G. Knepley   DM_Plex        *mesh          = (DM_Plex *)dm->data;
61203e9753d6SMatthew G. Knepley   const char     *name          = "Hybrid Jacobian";
6121148442b3SMatthew G. Knepley   DM              dmAux[3]      = {NULL, NULL, NULL};
6122148442b3SMatthew G. Knepley   DMLabel         ghostLabel    = NULL;
61233e9753d6SMatthew G. Knepley   DM              plex          = NULL;
61243e9753d6SMatthew G. Knepley   DM              plexA         = NULL;
6125148442b3SMatthew G. Knepley   PetscDS         ds            = NULL;
612607218a29SMatthew G. Knepley   PetscDS         dsIn          = NULL;
6127148442b3SMatthew G. Knepley   PetscDS         dsAux[3]      = {NULL, NULL, NULL};
6128148442b3SMatthew G. Knepley   Vec             locA[3]       = {NULL, NULL, NULL};
612907218a29SMatthew G. Knepley   DM              dmScale[3]    = {NULL, NULL, NULL};
613007218a29SMatthew G. Knepley   PetscDS         dsScale[3]    = {NULL, NULL, NULL};
613107218a29SMatthew G. Knepley   Vec             locS[3]       = {NULL, NULL, NULL};
61323e9753d6SMatthew G. Knepley   PetscSection    section       = NULL;
6133148442b3SMatthew G. Knepley   PetscSection    sectionAux[3] = {NULL, NULL, NULL};
61343e9753d6SMatthew G. Knepley   DMField         coordField    = NULL;
613507218a29SMatthew G. Knepley   PetscScalar    *a[3]          = {NULL, NULL, NULL};
613607218a29SMatthew G. Knepley   PetscScalar    *s[3]          = {NULL, NULL, NULL};
613707218a29SMatthew G. Knepley   PetscScalar    *u             = NULL, *u_t;
613807218a29SMatthew G. Knepley   PetscScalar    *elemMatNeg, *elemMatPos, *elemMatCoh;
613907218a29SMatthew G. Knepley   PetscScalar    *elemMatNegP, *elemMatPosP, *elemMatCohP;
6140e432b41dSStefano Zampini   PetscSection    globalSection;
61413e9753d6SMatthew G. Knepley   IS              chunkIS;
61423e9753d6SMatthew G. Knepley   const PetscInt *cells;
61433e9753d6SMatthew G. Knepley   PetscInt       *faces;
61443e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
61453e2b0218SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
61461690c2aeSBarry Smith   PetscInt        maxDegree  = PETSC_INT_MAX;
61473e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
61483e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
6149e432b41dSStefano Zampini   PetscBool       hasBdJac, hasBdPrec;
61503e9753d6SMatthew G. Knepley 
61513e9753d6SMatthew G. Knepley   PetscFunctionBegin;
61523cc88e6aSStefano Zampini   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
61533cc88e6aSStefano Zampini   if (!cellIS) goto end;
6154437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
6155437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
61563cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
61575fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
61585fedec97SMatthew G. Knepley     const char *name;
61599566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
616063a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
61615fedec97SMatthew G. Knepley   }
61629566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
6163b98a7184SJames Wright   PetscCall(DMGetLocalSection(dm, &section));
61649566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
61659566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
616607218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
61679566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
61689566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
616907218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
61709566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac));
61719566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec));
61729566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
6173148442b3SMatthew G. Knepley   if (locA[2]) {
61741059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
61751059d808SMatthew G. Knepley 
61769566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
61779566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA));
6178b98a7184SJames Wright     PetscCall(DMGetLocalSection(dmAux[2], &sectionAux[2]));
617907218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
61809566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
6181148442b3SMatthew G. Knepley     {
6182148442b3SMatthew G. Knepley       const PetscInt *cone;
6183148442b3SMatthew G. Knepley       PetscInt        c;
6184148442b3SMatthew G. Knepley 
61851059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
6186148442b3SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
6187148442b3SMatthew G. Knepley         const PetscInt *support;
6188148442b3SMatthew G. Knepley         PetscInt        ssize, s;
6189148442b3SMatthew G. Knepley 
61909566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
61919566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
61921059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
61931059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
61941059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
61951059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
61969566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
61979566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
6198ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
619907218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
62009566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
6201148442b3SMatthew G. Knepley       }
6202148442b3SMatthew G. Knepley     }
62033e9753d6SMatthew G. Knepley   }
620407218a29SMatthew G. Knepley   /* Handle mass matrix scaling
620507218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
620607218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
620707218a29SMatthew G. Knepley   if (locS[2]) {
62083e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
620907218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
621007218a29SMatthew G. Knepley 
621107218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
621207218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL));
62133e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
621407218a29SMatthew G. Knepley     // BRAD: This is not set correctly
621507218a29SMatthew G. Knepley     key[2].field = 2;
621607218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
621707218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
621807218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
62193e2b0218SMatthew G. Knepley     {
62203e2b0218SMatthew G. Knepley       const PetscInt *cone;
62213e2b0218SMatthew G. Knepley       PetscInt        c;
62223e2b0218SMatthew G. Knepley 
62233e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
62243e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
62253e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
62263e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
62273e2b0218SMatthew G. Knepley         const PetscInt *support;
62283e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
62293e2b0218SMatthew G. Knepley 
62303e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
62313e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
62323e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
62333e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
62343e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
62353e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
62363e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
62373e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
62383e2b0218SMatthew G. Knepley       }
62393e2b0218SMatthew G. Knepley     }
624007218a29SMatthew G. Knepley   }
624107218a29SMatthew G. Knepley   /* 2: Setup geometric data */
62429566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
62439566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
62443e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
62453e9753d6SMatthew G. Knepley     PetscInt f;
62469566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
62473e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
62483e9753d6SMatthew G. Knepley       PetscFE fe;
62493e9753d6SMatthew G. Knepley 
62509566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
62513e9753d6SMatthew G. Knepley       if (fe) {
62529566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
62539566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
62543e9753d6SMatthew G. Knepley       }
62553e9753d6SMatthew G. Knepley     }
62563e9753d6SMatthew G. Knepley   }
625707218a29SMatthew G. Knepley   /* Loop over chunks */
62583e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
62593e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
626007218a29SMatthew G. Knepley   PetscCall(PetscCalloc1(2 * cellChunkSize, &faces));
6261a4158a15SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
626207218a29SMatthew G. Knepley   /* Extract field coefficients */
626307218a29SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
626407218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
626507218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
62668bf0a22dSMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
626707218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
626807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
626907218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
627007218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
627107218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
627207218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
62733e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
62743e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
62753e9753d6SMatthew G. Knepley 
627607218a29SMatthew G. Knepley     if (hasBdJac) {
627707218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim));
627807218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim));
627907218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim));
628007218a29SMatthew G. Knepley     }
628107218a29SMatthew G. Knepley     if (hasBdPrec) {
628207218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim));
628307218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim));
628407218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim));
628507218a29SMatthew G. Knepley     }
62863e9753d6SMatthew G. Knepley     /* Get faces */
62873e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
62883e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
62893e9753d6SMatthew G. Knepley       const PetscInt *cone;
62909566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(plex, cell, &cone));
629107218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
629207218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
62933e9753d6SMatthew G. Knepley     }
629407218a29SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
62953e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
62969566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
62979566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
62983e9753d6SMatthew G. Knepley     } else {
62993e9753d6SMatthew G. Knepley       PetscInt f;
63003e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
63019566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
63023e9753d6SMatthew G. Knepley       }
63033e9753d6SMatthew G. Knepley     }
63043e9753d6SMatthew G. Knepley 
63053e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
63063e9753d6SMatthew G. Knepley       PetscFE         feI;
63073e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[fieldI];
63083e9753d6SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
63093e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI];
63103e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
63115fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
63123e9753d6SMatthew G. Knepley 
63139566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI));
63143e9753d6SMatthew G. Knepley       if (!feI) continue;
63159566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches));
63169566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
63179566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feI, &Nb));
63183e9753d6SMatthew G. Knepley       blockSize = Nb;
63193e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
63209566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches));
63213e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
63223e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
63233e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
63243e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
632507218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom));
632607218a29SMatthew G. Knepley       PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom));
63279566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField));
63283e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
63293e9753d6SMatthew G. Knepley         PetscFE feJ;
63303e9753d6SMatthew G. Knepley 
63319566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ));
63323e9753d6SMatthew G. Knepley         if (!feJ) continue;
6333148442b3SMatthew G. Knepley         key[0].field = fieldI * Nf + fieldJ;
6334148442b3SMatthew G. Knepley         key[1].field = fieldI * Nf + fieldJ;
63355fedec97SMatthew G. Knepley         key[2].field = fieldI * Nf + fieldJ;
6336148442b3SMatthew G. Knepley         if (hasBdJac) {
633707218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg));
63388e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, X_tShift, &elemMatNeg[offset * totDim * totDim]));
633907218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos));
63408e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, X_tShift, &elemMatPos[offset * totDim * totDim]));
6341148442b3SMatthew G. Knepley         }
6342148442b3SMatthew G. Knepley         if (hasBdPrec) {
634307218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP));
63448e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim]));
634507218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP));
63468e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim]));
6347148442b3SMatthew G. Knepley         }
63485fedec97SMatthew G. Knepley         if (hasBdJac) {
634907218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh));
63508e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, X_tShift, &elemMatCoh[offset * totDim * totDim]));
6351148442b3SMatthew G. Knepley         }
63525fedec97SMatthew G. Knepley         if (hasBdPrec) {
635307218a29SMatthew G. Knepley           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP));
63548e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim]));
63553e9753d6SMatthew G. Knepley         }
63563e9753d6SMatthew G. Knepley       }
63579566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
63589566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
63593e9753d6SMatthew G. Knepley     }
63603e9753d6SMatthew G. Knepley     /* Insert values into matrix */
63613e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
63623e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
636307218a29SMatthew G. Knepley       const PetscInt cind = c - cS, coff = cind * totDim * totDim;
636407218a29SMatthew G. Knepley       PetscInt       i, j;
63653e9753d6SMatthew G. Knepley 
636607218a29SMatthew G. Knepley       /* Scale element values */
636707218a29SMatthew G. Knepley       if (locS[0]) {
63683e2b0218SMatthew G. Knepley         PetscInt  Nb, soff = cind * totDimScale[0], off = 0;
636907218a29SMatthew G. Knepley         PetscBool cohesive;
637007218a29SMatthew G. Knepley 
637107218a29SMatthew G. Knepley         for (fieldI = 0; fieldI < Nf; ++fieldI) {
637207218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb));
637307218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive));
637407218a29SMatthew G. Knepley 
637507218a29SMatthew G. Knepley           if (fieldI == key[2].field) {
637607218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
63778bf0a22dSMatthew G. Knepley             for (i = 0; i < Nb; ++i) {
637807218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j];
63798bf0a22dSMatthew G. Knepley               if (hasBdPrec)
63808bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNegP[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPosP[coff + (off + i) * totDim + j];
63818bf0a22dSMatthew G. Knepley             }
638207218a29SMatthew G. Knepley             off += Nb;
638307218a29SMatthew G. Knepley           } else {
638407218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
638507218a29SMatthew G. Knepley 
63868bf0a22dSMatthew G. Knepley             for (i = 0; i < N; ++i) {
638707218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j];
63888bf0a22dSMatthew G. Knepley               if (hasBdPrec)
63898bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += elemMatNegP[coff + (off + i) * totDim + j] + elemMatPosP[coff + (off + i) * totDim + j];
63908bf0a22dSMatthew G. Knepley             }
639107218a29SMatthew G. Knepley             off += N;
639207218a29SMatthew G. Knepley           }
639307218a29SMatthew G. Knepley         }
639407218a29SMatthew G. Knepley       } else {
639507218a29SMatthew G. Knepley         for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i];
63968bf0a22dSMatthew G. Knepley         if (hasBdPrec)
63978bf0a22dSMatthew G. Knepley           for (i = 0; i < totDim * totDim; ++i) elemMatCohP[coff + i] += elemMatNegP[coff + i] + elemMatPosP[coff + i];
639807218a29SMatthew G. Knepley       }
63993e9753d6SMatthew G. Knepley       if (hasBdPrec) {
64003e9753d6SMatthew G. Knepley         if (hasBdJac) {
640107218a29SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
6402e8e188d2SZach Atkins           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
64033e9753d6SMatthew G. Knepley         }
640407218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim]));
640507218a29SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES));
64063e9753d6SMatthew G. Knepley       } else if (hasBdJac) {
640707218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
6408e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
64093e9753d6SMatthew G. Knepley       }
64103e9753d6SMatthew G. Knepley     }
64113e9753d6SMatthew G. Knepley   }
64129566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
641307218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
641407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
641507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
641607218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
641707218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
641807218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
641907218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
64209566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
64219566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
64229566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
64233e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
64249566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
64259566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
64263e9753d6SMatthew G. Knepley   } else {
64273e9753d6SMatthew G. Knepley     PetscInt f;
64283e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
64299566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
64309566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
64313e9753d6SMatthew G. Knepley     }
64329566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
64333e9753d6SMatthew G. Knepley   }
64349566063dSJacob Faibussowitsch   if (dmAux[2]) PetscCall(DMDestroy(&plexA));
64359566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
64363cc88e6aSStefano Zampini end:
64379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
64383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
64393e9753d6SMatthew G. Knepley }
64408e3a2eefSMatthew G. Knepley 
64418e3a2eefSMatthew G. Knepley /*
64428e3a2eefSMatthew G. Knepley   DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user.
64438e3a2eefSMatthew G. Knepley 
64448e3a2eefSMatthew G. Knepley   Input Parameters:
64458e3a2eefSMatthew G. Knepley + dm     - The mesh
6446baca6076SPierre Jolivet . key    - The PetscWeakFormKey indicating where integration should happen
644706ad1575SMatthew G. Knepley . cellIS - The cells to integrate over
64488e3a2eefSMatthew G. Knepley . t      - The time
6449145b44c9SPierre Jolivet . X_tShift - The multiplier for the Jacobian with respect to X_t
64508e3a2eefSMatthew G. Knepley . X      - Local solution vector
64518e3a2eefSMatthew G. Knepley . X_t    - Time-derivative of the local solution vector
64528e3a2eefSMatthew G. Knepley . Y      - Local input vector
645306ad1575SMatthew G. Knepley - user   - the user context
64548e3a2eefSMatthew G. Knepley 
64558e3a2eefSMatthew G. Knepley   Output Parameter:
64568e3a2eefSMatthew G. Knepley . Z - Local output vector
64578e3a2eefSMatthew G. Knepley 
64588e3a2eefSMatthew G. Knepley   Note:
64598e3a2eefSMatthew G. Knepley   We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator,
64608e3a2eefSMatthew G. Knepley   like a GPU, or vectorize on a multicore machine.
64618e3a2eefSMatthew G. Knepley */
6462d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user)
6463d71ae5a4SJacob Faibussowitsch {
64648e3a2eefSMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
64658e3a2eefSMatthew G. Knepley   const char     *name  = "Jacobian";
64668e3a2eefSMatthew G. Knepley   DM              dmAux = NULL, plex, plexAux = NULL;
64678e3a2eefSMatthew G. Knepley   DMEnclosureType encAux;
64688e3a2eefSMatthew G. Knepley   Vec             A;
64698e3a2eefSMatthew G. Knepley   DMField         coordField;
64708e3a2eefSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
64718e3a2eefSMatthew G. Knepley   PetscQuadrature quad;
64728e3a2eefSMatthew G. Knepley   PetscSection    section, globalSection, sectionAux;
64738e3a2eefSMatthew G. Knepley   PetscScalar    *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z;
64748e3a2eefSMatthew G. Knepley   const PetscInt *cells;
64758e3a2eefSMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
64768e3a2eefSMatthew G. Knepley   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
64778e3a2eefSMatthew G. Knepley   PetscBool       hasDyn;
64788e3a2eefSMatthew G. Knepley 
64798e3a2eefSMatthew G. Knepley   PetscFunctionBegin;
64809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
64819566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
64829566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
64839566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
64849566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
64859566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
648607218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
64879566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
64889566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
64899566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
64908e3a2eefSMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
64919566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
64928e3a2eefSMatthew G. Knepley   if (A) {
64939566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
64949566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
64959566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexAux));
64969566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexAux, &sectionAux));
64979566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
64989566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
64998e3a2eefSMatthew G. Knepley   }
65009566063dSJacob Faibussowitsch   PetscCall(VecSet(Z, 0.0));
650132603206SJames Wright   PetscCall(PetscMalloc6(numCells * totDim, &u, (X_t ? (size_t)numCells * totDim : 0), &u_t, numCells * totDim * totDim, &elemMat, (hasDyn ? (size_t)numCells * totDim * totDim : 0), &elemMatD, numCells * totDim, &y, totDim, &z));
65029566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
65039566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
65048e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
65058e3a2eefSMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
65068e3a2eefSMatthew G. Knepley     const PetscInt cind = c - cStart;
65078e3a2eefSMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
65088e3a2eefSMatthew G. Knepley     PetscInt       i;
65098e3a2eefSMatthew G. Knepley 
65109566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x));
65118e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
65129566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x));
65138e3a2eefSMatthew G. Knepley     if (X_t) {
65149566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t));
65158e3a2eefSMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
65169566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t));
65178e3a2eefSMatthew G. Knepley     }
65188e3a2eefSMatthew G. Knepley     if (dmAux) {
65198e3a2eefSMatthew G. Knepley       PetscInt subcell;
65209566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
65219566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x));
65228e3a2eefSMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
65239566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x));
65248e3a2eefSMatthew G. Knepley     }
65259566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x));
65268e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i];
65279566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x));
65288e3a2eefSMatthew G. Knepley   }
65299566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
65309566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
65318e3a2eefSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
65328e3a2eefSMatthew G. Knepley     PetscFE  fe;
65338e3a2eefSMatthew G. Knepley     PetscInt Nb;
65348e3a2eefSMatthew G. Knepley     /* Conforming batches */
65358e3a2eefSMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
65368e3a2eefSMatthew G. Knepley     /* Remainder */
65378e3a2eefSMatthew G. Knepley     PetscInt        Nr, offset, Nq;
65388e3a2eefSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
65398e3a2eefSMatthew G. Knepley     PetscInt        maxDegree;
65408e3a2eefSMatthew G. Knepley     PetscFEGeom    *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
65418e3a2eefSMatthew G. Knepley 
65429566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
65439566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
65449566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
65459566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
65469566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
65479566063dSJacob Faibussowitsch     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
65488e3a2eefSMatthew G. Knepley     if (!qGeom) {
65499566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
65509566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
65518e3a2eefSMatthew G. Knepley     }
65529566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
65539566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
65548e3a2eefSMatthew G. Knepley     blockSize = Nb;
65558e3a2eefSMatthew G. Knepley     batchSize = numBlocks * blockSize;
65569566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
65578e3a2eefSMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
65588e3a2eefSMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
65598e3a2eefSMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
65608e3a2eefSMatthew G. Knepley     offset    = numCells - Nr;
65619566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
65629566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
65638e3a2eefSMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
65648e3a2eefSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
65659566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
65668e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
65678e3a2eefSMatthew G. Knepley       if (hasDyn) {
65689566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
65698e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
65708e3a2eefSMatthew G. Knepley       }
65718e3a2eefSMatthew G. Knepley     }
65729566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
65739566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
65749566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
65759566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
65768e3a2eefSMatthew G. Knepley   }
65778e3a2eefSMatthew G. Knepley   if (hasDyn) {
65788e3a2eefSMatthew G. Knepley     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
65798e3a2eefSMatthew G. Knepley   }
65808e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
65818e3a2eefSMatthew G. Knepley     const PetscInt     cell = cells ? cells[c] : c;
65828e3a2eefSMatthew G. Knepley     const PetscInt     cind = c - cStart;
65836497c311SBarry Smith     const PetscBLASInt one  = 1;
65846497c311SBarry Smith     PetscBLASInt       M;
65858e3a2eefSMatthew G. Knepley     const PetscScalar  a = 1.0, b = 0.0;
65868e3a2eefSMatthew G. Knepley 
65876497c311SBarry Smith     PetscCall(PetscBLASIntCast(totDim, &M));
6588792fecdfSBarry Smith     PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one));
65898e3a2eefSMatthew G. Knepley     if (mesh->printFEM > 1) {
65909566063dSJacob Faibussowitsch       PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
65919566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim]));
65929566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Z", totDim, z));
65938e3a2eefSMatthew G. Knepley     }
65949566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES));
65958e3a2eefSMatthew G. Knepley   }
65969566063dSJacob Faibussowitsch   PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z));
65978e3a2eefSMatthew G. Knepley   if (mesh->printFEM) {
65989566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n"));
65999566063dSJacob Faibussowitsch     PetscCall(VecView(Z, NULL));
66008e3a2eefSMatthew G. Knepley   }
66011059d808SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
66029566063dSJacob Faibussowitsch   PetscCall(PetscFree(a));
66039566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexAux));
66049566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
66059566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
66063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66078e3a2eefSMatthew G. Knepley }
6608d52c2f21SMatthew G. Knepley 
6609d52c2f21SMatthew G. Knepley static void f0_1(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
6610d52c2f21SMatthew G. Knepley {
6611d52c2f21SMatthew G. Knepley   f0[0] = u[0];
6612d52c2f21SMatthew G. Knepley }
6613d52c2f21SMatthew G. Knepley 
6614d52c2f21SMatthew G. Knepley static void f0_x(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
6615d52c2f21SMatthew G. Knepley {
6616d52c2f21SMatthew G. Knepley   f0[0] = x[(int)PetscRealPart(constants[0])] * u[0];
6617d52c2f21SMatthew G. Knepley }
6618d52c2f21SMatthew G. Knepley 
6619d52c2f21SMatthew G. Knepley static void f0_x2(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
6620d52c2f21SMatthew G. Knepley {
6621d52c2f21SMatthew G. Knepley   PetscInt d;
6622d52c2f21SMatthew G. Knepley 
6623d52c2f21SMatthew G. Knepley   f0[0] = 0.0;
6624d52c2f21SMatthew G. Knepley   for (d = 0; d < dim; ++d) f0[0] += PetscSqr(x[d]) * u[0];
6625d52c2f21SMatthew G. Knepley }
6626d52c2f21SMatthew G. Knepley 
6627d52c2f21SMatthew G. Knepley /*@
6628d52c2f21SMatthew G. Knepley   DMPlexComputeMoments - Compute the first three moments for a field
6629d52c2f21SMatthew G. Knepley 
6630d52c2f21SMatthew G. Knepley   Noncollective
6631d52c2f21SMatthew G. Knepley 
6632d52c2f21SMatthew G. Knepley   Input Parameters:
6633d52c2f21SMatthew G. Knepley + dm - the `DMPLEX`
6634d52c2f21SMatthew G. Knepley - u  - the field
6635d52c2f21SMatthew G. Knepley 
6636d52c2f21SMatthew G. Knepley   Output Parameter:
6637d52c2f21SMatthew G. Knepley . moments - the field moments
6638d52c2f21SMatthew G. Knepley 
6639d52c2f21SMatthew G. Knepley   Level: intermediate
6640d52c2f21SMatthew G. Knepley 
6641d52c2f21SMatthew G. Knepley   Note:
6642*17314648SMatthew G. Knepley   The `moments` array should be of length cdim + 2, where cdim is the number of components for the coordinate field.
6643d52c2f21SMatthew G. Knepley 
6644d52c2f21SMatthew G. Knepley .seealso: `DM`, `DMPLEX`, `DMSwarmComputeMoments()`
6645d52c2f21SMatthew G. Knepley @*/
6646d52c2f21SMatthew G. Knepley PetscErrorCode DMPlexComputeMoments(DM dm, Vec u, PetscReal moments[])
6647d52c2f21SMatthew G. Knepley {
6648d52c2f21SMatthew G. Knepley   PetscDS            ds;
6649d52c2f21SMatthew G. Knepley   PetscScalar        mom, constants[1];
6650d52c2f21SMatthew G. Knepley   const PetscScalar *oldConstants;
6651*17314648SMatthew G. Knepley   PetscInt           cdim, Nf, field = 0, Ncon;
6652d52c2f21SMatthew G. Knepley   MPI_Comm           comm;
6653d52c2f21SMatthew G. Knepley   void              *user;
6654d52c2f21SMatthew G. Knepley 
6655d52c2f21SMatthew G. Knepley   PetscFunctionBeginUser;
6656d52c2f21SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
6657*17314648SMatthew G. Knepley   PetscCall(DMGetCoordinateDim(dm, &cdim));
6658d52c2f21SMatthew G. Knepley   PetscCall(DMGetApplicationContext(dm, &user));
6659d52c2f21SMatthew G. Knepley   PetscCall(DMGetDS(dm, &ds));
6660d52c2f21SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(ds, &Nf));
6661d52c2f21SMatthew G. Knepley   PetscCall(PetscDSGetConstants(ds, &Ncon, &oldConstants));
6662d52c2f21SMatthew G. Knepley   PetscCheck(Nf == 1, comm, PETSC_ERR_ARG_WRONG, "We currently only support 1 field, not %" PetscInt_FMT, Nf);
6663d52c2f21SMatthew G. Knepley   PetscCall(PetscDSSetObjective(ds, field, &f0_1));
6664d52c2f21SMatthew G. Knepley   PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user));
6665d52c2f21SMatthew G. Knepley   moments[0] = PetscRealPart(mom);
6666*17314648SMatthew G. Knepley   for (PetscInt c = 0; c < cdim; ++c) {
6667d52c2f21SMatthew G. Knepley     constants[0] = c;
6668*17314648SMatthew G. Knepley     PetscCall(PetscDSSetConstants(ds, 1, constants));
6669d52c2f21SMatthew G. Knepley     PetscCall(PetscDSSetObjective(ds, field, &f0_x));
6670d52c2f21SMatthew G. Knepley     PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user));
6671d52c2f21SMatthew G. Knepley     moments[c + 1] = PetscRealPart(mom);
6672d52c2f21SMatthew G. Knepley   }
6673d52c2f21SMatthew G. Knepley   PetscCall(PetscDSSetObjective(ds, field, &f0_x2));
6674d52c2f21SMatthew G. Knepley   PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user));
6675*17314648SMatthew G. Knepley   moments[cdim + 1] = PetscRealPart(mom);
6676d52c2f21SMatthew G. Knepley   PetscCall(PetscDSSetConstants(ds, Ncon, (PetscScalar *)oldConstants));
6677d52c2f21SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6678d52c2f21SMatthew G. Knepley }
6679