xref: /petsc/src/dm/impls/plex/plexfem.c (revision 2192575e8c1428e47f7eac7b348fe8e57717183e)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I      "petscdmplex.h"   I*/
2da97024aSMatthew G. Knepley #include <petscsf.h>
3cb1e1211SMatthew G Knepley 
48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h>
5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h>
6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
8a0845e3aSMatthew G. Knepley 
95f0b18bfSMatthew G. Knepley PetscBool  Clementcite       = PETSC_FALSE;
105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n"
115f0b18bfSMatthew G. Knepley                                "  title   = {Approximation by finite element functions using local regularization},\n"
125f0b18bfSMatthew G. Knepley                                "  author  = {Philippe Cl{\\'e}ment},\n"
135f0b18bfSMatthew G. Knepley                                "  journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n"
145f0b18bfSMatthew G. Knepley                                "  volume  = {9},\n"
155f0b18bfSMatthew G. Knepley                                "  number  = {R2},\n"
165f0b18bfSMatthew G. Knepley                                "  pages   = {77--84},\n"
175f0b18bfSMatthew G. Knepley                                "  year    = {1975}\n}\n";
185f0b18bfSMatthew G. Knepley 
19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy)
20d71ae5a4SJacob Faibussowitsch {
212f856554SMatthew G. Knepley   PetscBool isPlex;
222f856554SMatthew G. Knepley 
232f856554SMatthew G. Knepley   PetscFunctionBegin;
249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
252f856554SMatthew G. Knepley   if (isPlex) {
262f856554SMatthew G. Knepley     *plex = dm;
279566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
282f856554SMatthew G. Knepley   } else {
299566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
302f856554SMatthew G. Knepley     if (!*plex) {
319566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
329566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
33cbf8eb3cSStefano Zampini     } else {
34cbf8eb3cSStefano Zampini       PetscCall(PetscObjectReference((PetscObject)*plex));
35cbf8eb3cSStefano Zampini     }
362f856554SMatthew G. Knepley     if (copy) {
372f856554SMatthew G. Knepley       DMSubDomainHookLink link;
389a2a23afSMatthew G. Knepley 
39bb4b53efSMatthew G. Knepley       PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, *plex));
409566063dSJacob Faibussowitsch       PetscCall(DMCopyAuxiliaryVec(dm, *plex));
419a2a23afSMatthew G. Knepley       /* Run the subdomain hook (this will copy the DMSNES/DMTS) */
422f856554SMatthew G. Knepley       for (link = dm->subdomainhook; link; link = link->next) {
439566063dSJacob Faibussowitsch         if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx));
442f856554SMatthew G. Knepley       }
452f856554SMatthew G. Knepley     }
462f856554SMatthew G. Knepley   }
473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
482f856554SMatthew G. Knepley }
492f856554SMatthew G. Knepley 
5049abdd8aSBarry Smith static PetscErrorCode PetscContainerCtxDestroy_PetscFEGeom(void **ctx)
51d71ae5a4SJacob Faibussowitsch {
5249abdd8aSBarry Smith   PetscFEGeom *geom = (PetscFEGeom *)*ctx;
539b6f715bSMatthew G. Knepley 
549b6f715bSMatthew G. Knepley   PetscFunctionBegin;
559566063dSJacob Faibussowitsch   PetscCall(PetscFEGeomDestroy(&geom));
563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
579b6f715bSMatthew G. Knepley }
589b6f715bSMatthew G. Knepley 
59ac9d17c7SMatthew G. Knepley static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscFEGeomMode mode, PetscFEGeom **geom)
60d71ae5a4SJacob Faibussowitsch {
619b6f715bSMatthew G. Knepley   char           composeStr[33] = {0};
629b6f715bSMatthew G. Knepley   PetscObjectId  id;
639b6f715bSMatthew G. Knepley   PetscContainer container;
649b6f715bSMatthew G. Knepley 
659b6f715bSMatthew G. Knepley   PetscFunctionBegin;
669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
6763a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id));
689566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
699b6f715bSMatthew G. Knepley   if (container) {
709566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
719b6f715bSMatthew G. Knepley   } else {
72ac9d17c7SMatthew G. Knepley     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, mode, geom));
739566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
749566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
7549abdd8aSBarry Smith     PetscCall(PetscContainerSetCtxDestroy(container, PetscContainerCtxDestroy_PetscFEGeom));
769566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
779566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
789b6f715bSMatthew G. Knepley   }
793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
809b6f715bSMatthew G. Knepley }
819b6f715bSMatthew G. Knepley 
82ac9d17c7SMatthew G. Knepley static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscFEGeomMode mode, PetscFEGeom **geom)
83d71ae5a4SJacob Faibussowitsch {
849b6f715bSMatthew G. Knepley   PetscFunctionBegin;
859b6f715bSMatthew G. Knepley   *geom = NULL;
863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
879b6f715bSMatthew G. Knepley }
889b6f715bSMatthew G. Knepley 
8946fa42a0SMatthew G. Knepley /*@
9046fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
9146fa42a0SMatthew G. Knepley 
9220f4b53cSBarry Smith   Not Collective
9346fa42a0SMatthew G. Knepley 
944165533cSJose E. Roman   Input Parameters:
95a1cb98faSBarry Smith + dm   - the `DM`
9646fa42a0SMatthew G. Knepley - unit - The SI unit
9746fa42a0SMatthew G. Knepley 
984165533cSJose E. Roman   Output Parameter:
9946fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
10046fa42a0SMatthew G. Knepley 
10146fa42a0SMatthew G. Knepley   Level: advanced
10246fa42a0SMatthew G. Knepley 
1031cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit`
10446fa42a0SMatthew G. Knepley @*/
105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
106d71ae5a4SJacob Faibussowitsch {
107cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
108cb1e1211SMatthew G Knepley 
109cb1e1211SMatthew G Knepley   PetscFunctionBegin;
110cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1114f572ea9SToby Isaac   PetscAssertPointer(scale, 3);
112cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
1133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
114cb1e1211SMatthew G Knepley }
115cb1e1211SMatthew G Knepley 
11646fa42a0SMatthew G. Knepley /*@
11746fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
11846fa42a0SMatthew G. Knepley 
11920f4b53cSBarry Smith   Not Collective
12046fa42a0SMatthew G. Knepley 
1214165533cSJose E. Roman   Input Parameters:
122a1cb98faSBarry Smith + dm    - the `DM`
12346fa42a0SMatthew G. Knepley . unit  - The SI unit
12446fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
12546fa42a0SMatthew G. Knepley 
12646fa42a0SMatthew G. Knepley   Level: advanced
12746fa42a0SMatthew G. Knepley 
1281cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit`
12946fa42a0SMatthew G. Knepley @*/
130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
131d71ae5a4SJacob Faibussowitsch {
132cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
133cb1e1211SMatthew G Knepley 
134cb1e1211SMatthew G Knepley   PetscFunctionBegin;
135cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
136cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
1373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
138cb1e1211SMatthew G Knepley }
139cb1e1211SMatthew G Knepley 
140d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed_Plex(DM dm, PetscBool *useCeed)
141d2b2dc1eSMatthew G. Knepley {
142d2b2dc1eSMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
143d2b2dc1eSMatthew G. Knepley 
144d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
145d2b2dc1eSMatthew G. Knepley   *useCeed = mesh->useCeed;
146d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
147d2b2dc1eSMatthew G. Knepley }
148d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed_Plex(DM dm, PetscBool useCeed)
149d2b2dc1eSMatthew G. Knepley {
150d2b2dc1eSMatthew G. Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
151d2b2dc1eSMatthew G. Knepley 
152d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
153d2b2dc1eSMatthew G. Knepley   mesh->useCeed = useCeed;
154d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
155d2b2dc1eSMatthew G. Knepley }
156d2b2dc1eSMatthew G. Knepley 
157d2b2dc1eSMatthew G. Knepley /*@
158d2b2dc1eSMatthew G. Knepley   DMPlexGetUseCeed - Get flag for using the LibCEED backend
159d2b2dc1eSMatthew G. Knepley 
160d2b2dc1eSMatthew G. Knepley   Not collective
161d2b2dc1eSMatthew G. Knepley 
162d2b2dc1eSMatthew G. Knepley   Input Parameter:
163d2b2dc1eSMatthew G. Knepley . dm - The `DM`
164d2b2dc1eSMatthew G. Knepley 
165d2b2dc1eSMatthew G. Knepley   Output Parameter:
166d2b2dc1eSMatthew G. Knepley . useCeed - The flag
167d2b2dc1eSMatthew G. Knepley 
168d2b2dc1eSMatthew G. Knepley   Level: intermediate
169d2b2dc1eSMatthew G. Knepley 
170d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetUseCeed()`
171d2b2dc1eSMatthew G. Knepley @*/
172d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed(DM dm, PetscBool *useCeed)
173d2b2dc1eSMatthew G. Knepley {
174d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
175d2b2dc1eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
176d2b2dc1eSMatthew G. Knepley   PetscAssertPointer(useCeed, 2);
177d2b2dc1eSMatthew G. Knepley   *useCeed = PETSC_FALSE;
178d2b2dc1eSMatthew G. Knepley   PetscTryMethod(dm, "DMPlexGetUseCeed_C", (DM, PetscBool *), (dm, useCeed));
179d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
180d2b2dc1eSMatthew G. Knepley }
181d2b2dc1eSMatthew G. Knepley 
182d2b2dc1eSMatthew G. Knepley /*@
183d2b2dc1eSMatthew G. Knepley   DMPlexSetUseCeed - Set flag for using the LibCEED backend
184d2b2dc1eSMatthew G. Knepley 
185d2b2dc1eSMatthew G. Knepley   Not collective
186d2b2dc1eSMatthew G. Knepley 
187d2b2dc1eSMatthew G. Knepley   Input Parameters:
188d2b2dc1eSMatthew G. Knepley + dm      - The `DM`
189d2b2dc1eSMatthew G. Knepley - useCeed - The flag
190d2b2dc1eSMatthew G. Knepley 
191d2b2dc1eSMatthew G. Knepley   Level: intermediate
192d2b2dc1eSMatthew G. Knepley 
193fe8e7dddSPierre Jolivet .seealso: `DMPlexGetUseCeed()`
194d2b2dc1eSMatthew G. Knepley @*/
195d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed(DM dm, PetscBool useCeed)
196d2b2dc1eSMatthew G. Knepley {
197d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
198d2b2dc1eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
199d2b2dc1eSMatthew G. Knepley   PetscValidLogicalCollectiveBool(dm, useCeed, 2);
200d2b2dc1eSMatthew G. Knepley   PetscUseMethod(dm, "DMPlexSetUseCeed_C", (DM, PetscBool), (dm, useCeed));
201d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
202d2b2dc1eSMatthew G. Knepley }
203d2b2dc1eSMatthew G. Knepley 
204e8e188d2SZach Atkins /*@
205e8e188d2SZach Atkins   DMPlexGetUseMatClosurePermutation - Get flag for using a closure permutation for matrix insertion
206e8e188d2SZach Atkins 
207e8e188d2SZach Atkins   Not collective
208e8e188d2SZach Atkins 
209e8e188d2SZach Atkins   Input Parameter:
210e8e188d2SZach Atkins . dm - The `DM`
211e8e188d2SZach Atkins 
212e8e188d2SZach Atkins   Output Parameter:
213e8e188d2SZach Atkins . useClPerm - The flag
214e8e188d2SZach Atkins 
215e8e188d2SZach Atkins   Level: intermediate
216e8e188d2SZach Atkins 
217e8e188d2SZach Atkins .seealso: `DMPlexSetUseMatClosurePermutation()`
218e8e188d2SZach Atkins @*/
219e8e188d2SZach Atkins PetscErrorCode DMPlexGetUseMatClosurePermutation(DM dm, PetscBool *useClPerm)
220e8e188d2SZach Atkins {
221e8e188d2SZach Atkins   DM_Plex *mesh = (DM_Plex *)dm->data;
222e8e188d2SZach Atkins 
223e8e188d2SZach Atkins   PetscFunctionBegin;
224e8e188d2SZach Atkins   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
225e8e188d2SZach Atkins   PetscAssertPointer(useClPerm, 2);
226e8e188d2SZach Atkins   *useClPerm = mesh->useMatClPerm;
227e8e188d2SZach Atkins   PetscFunctionReturn(PETSC_SUCCESS);
228e8e188d2SZach Atkins }
229e8e188d2SZach Atkins 
230e8e188d2SZach Atkins /*@
231e8e188d2SZach Atkins   DMPlexSetUseMatClosurePermutation - Set flag for using a closure permutation for matrix insertion
232e8e188d2SZach Atkins 
233e8e188d2SZach Atkins   Not collective
234e8e188d2SZach Atkins 
235e8e188d2SZach Atkins   Input Parameters:
236e8e188d2SZach Atkins + dm        - The `DM`
237e8e188d2SZach Atkins - useClPerm - The flag
238e8e188d2SZach Atkins 
239e8e188d2SZach Atkins   Level: intermediate
240e8e188d2SZach Atkins 
241e8e188d2SZach Atkins .seealso: `DMPlexGetUseMatClosurePermutation()`
242e8e188d2SZach Atkins @*/
243e8e188d2SZach Atkins PetscErrorCode DMPlexSetUseMatClosurePermutation(DM dm, PetscBool useClPerm)
244e8e188d2SZach Atkins {
245e8e188d2SZach Atkins   DM_Plex *mesh = (DM_Plex *)dm->data;
246e8e188d2SZach Atkins 
247e8e188d2SZach Atkins   PetscFunctionBegin;
248e8e188d2SZach Atkins   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
249e8e188d2SZach Atkins   PetscValidLogicalCollectiveBool(dm, useClPerm, 2);
250e8e188d2SZach Atkins   mesh->useMatClPerm = useClPerm;
251e8e188d2SZach Atkins   PetscFunctionReturn(PETSC_SUCCESS);
252e8e188d2SZach Atkins }
253e8e188d2SZach Atkins 
254d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx)
255d71ae5a4SJacob Faibussowitsch {
2569371c9d4SSatish Balay   const PetscInt eps[3][3][3] = {
2579371c9d4SSatish Balay     {{0, 0, 0},  {0, 0, 1},  {0, -1, 0}},
2589371c9d4SSatish Balay     {{0, 0, -1}, {0, 0, 0},  {1, 0, 0} },
2599371c9d4SSatish Balay     {{0, 1, 0},  {-1, 0, 0}, {0, 0, 0} }
2609371c9d4SSatish Balay   };
261026175e5SToby Isaac   PetscInt *ctxInt = (PetscInt *)ctx;
262ad917190SMatthew G. Knepley   PetscInt  dim2   = ctxInt[0];
263026175e5SToby Isaac   PetscInt  d      = ctxInt[1];
264026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
265026175e5SToby Isaac 
266ad917190SMatthew G. Knepley   PetscFunctionBegin;
26763a3b9bcSJacob Faibussowitsch   PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2);
268026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
269026175e5SToby Isaac   if (d < dim) {
27012adca46SMatthew G. Knepley     mode[d] = 1.; /* Translation along axis d */
271ad917190SMatthew G. Knepley   } else {
272026175e5SToby Isaac     for (i = 0; i < dim; i++) {
2739371c9d4SSatish Balay       for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ }
274026175e5SToby Isaac     }
275026175e5SToby Isaac   }
2763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277026175e5SToby Isaac }
278026175e5SToby Isaac 
279cc4e42d9SMartin Diehl /*@
28012adca46SMatthew G. Knepley   DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation
281cb1e1211SMatthew G Knepley 
28220f4b53cSBarry Smith   Collective
283cb1e1211SMatthew G Knepley 
2844165533cSJose E. Roman   Input Parameters:
285a1cb98faSBarry Smith + dm    - the `DM`
28656cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default
287cb1e1211SMatthew G Knepley 
2884165533cSJose E. Roman   Output Parameter:
289cb1e1211SMatthew G Knepley . sp - the null space
290cb1e1211SMatthew G Knepley 
291cb1e1211SMatthew G Knepley   Level: advanced
292cb1e1211SMatthew G Knepley 
293a1cb98faSBarry Smith   Note:
294a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
295a1cb98faSBarry Smith 
2961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG`
297cb1e1211SMatthew G Knepley @*/
298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp)
299d71ae5a4SJacob Faibussowitsch {
30056cf3b9cSMatthew G. Knepley   PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *);
301cb1e1211SMatthew G Knepley   MPI_Comm     comm;
302026175e5SToby Isaac   Vec          mode[6];
303026175e5SToby Isaac   PetscSection section, globalSection;
30456cf3b9cSMatthew G. Knepley   PetscInt     dim, dimEmbed, Nf, n, m, mmin, d, i, j;
305db14aad5SMatthew G. Knepley   void       **ctxs;
306cb1e1211SMatthew G Knepley 
307cb1e1211SMatthew G Knepley   PetscFunctionBegin;
3089566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3099566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
3109566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
3119566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
31263a3b9bcSJacob Faibussowitsch   PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf);
31356cf3b9cSMatthew G. Knepley   if (dim == 1 && Nf < 2) {
3149566063dSJacob Faibussowitsch     PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp));
3153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
316cb1e1211SMatthew G Knepley   }
3179566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
3189566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
3199566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
320db14aad5SMatthew G. Knepley   PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs));
321b247467aSMatthew G. Knepley   m = (dim * (dim + 1)) / 2;
3229566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
3239566063dSJacob Faibussowitsch   PetscCall(VecSetType(mode[0], dm->vectype));
3249566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
3259566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
3269566063dSJacob Faibussowitsch   PetscCall(VecGetSize(mode[0], &n));
327b247467aSMatthew G. Knepley   mmin        = PetscMin(m, n);
32856cf3b9cSMatthew G. Knepley   func[field] = DMPlexProjectRigidBody_Private;
3299566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
330026175e5SToby Isaac   for (d = 0; d < m; d++) {
331330485fdSToby Isaac     PetscInt ctx[2];
332cb1e1211SMatthew G Knepley 
333db14aad5SMatthew G. Knepley     ctxs[field] = (void *)(&ctx[0]);
3349d8fbdeaSMatthew G. Knepley     ctx[0]      = dimEmbed;
335330485fdSToby Isaac     ctx[1]      = d;
336db14aad5SMatthew G. Knepley     PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d]));
337cb1e1211SMatthew G Knepley   }
3383b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
339b50a2c0aSJacob Faibussowitsch   for (i = 0; i < mmin; ++i) {
340b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
341b50a2c0aSJacob Faibussowitsch 
3429566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
3439566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1));
344b50a2c0aSJacob Faibussowitsch     for (j = i + 1; j < mmin; ++j) {
345b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
3469566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
347b50a2c0aSJacob Faibussowitsch     }
348cb1e1211SMatthew G Knepley   }
3499566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp));
3509566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
351db14aad5SMatthew G. Knepley   PetscCall(PetscFree2(func, ctxs));
3523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
353cb1e1211SMatthew G Knepley }
354cb1e1211SMatthew G Knepley 
355cc4e42d9SMartin Diehl /*@
35612adca46SMatthew G. Knepley   DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation
35712adca46SMatthew G. Knepley 
35820f4b53cSBarry Smith   Collective
35912adca46SMatthew G. Knepley 
3604165533cSJose E. Roman   Input Parameters:
361a1cb98faSBarry Smith + dm    - the `DM`
36212adca46SMatthew G. Knepley . nb    - The number of bodies
363a1cb98faSBarry Smith . label - The `DMLabel` marking each domain
36412adca46SMatthew G. Knepley . nids  - The number of ids per body
36512adca46SMatthew G. Knepley - ids   - An array of the label ids in sequence for each domain
36612adca46SMatthew G. Knepley 
3674165533cSJose E. Roman   Output Parameter:
36812adca46SMatthew G. Knepley . sp - the null space
36912adca46SMatthew G. Knepley 
37012adca46SMatthew G. Knepley   Level: advanced
37112adca46SMatthew G. Knepley 
372a1cb98faSBarry Smith   Note:
373a1cb98faSBarry Smith   This is necessary to provide a suitable coarse space for algebraic multigrid
374a1cb98faSBarry Smith 
3751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`
37612adca46SMatthew G. Knepley @*/
377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp)
378d71ae5a4SJacob Faibussowitsch {
37912adca46SMatthew G. Knepley   MPI_Comm     comm;
38012adca46SMatthew G. Knepley   PetscSection section, globalSection;
38112adca46SMatthew G. Knepley   Vec         *mode;
38212adca46SMatthew G. Knepley   PetscScalar *dots;
38312adca46SMatthew G. Knepley   PetscInt     dim, dimEmbed, n, m, b, d, i, j, off;
38412adca46SMatthew G. Knepley 
38512adca46SMatthew G. Knepley   PetscFunctionBegin;
3869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3879566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
3889566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
3899566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
3909566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
3919566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
39212adca46SMatthew G. Knepley   m = nb * (dim * (dim + 1)) / 2;
3939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &mode, m, &dots));
3949566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
3959566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
3969566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
3979566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
39812adca46SMatthew G. Knepley   for (b = 0, off = 0; b < nb; ++b) {
39912adca46SMatthew G. Knepley     for (d = 0; d < m / nb; ++d) {
40012adca46SMatthew G. Knepley       PetscInt ctx[2];
40112adca46SMatthew G. Knepley       PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
40212adca46SMatthew G. Knepley       void *voidctx                                                                                   = (void *)(&ctx[0]);
40312adca46SMatthew G. Knepley 
40412adca46SMatthew G. Knepley       ctx[0] = dimEmbed;
40512adca46SMatthew G. Knepley       ctx[1] = d;
4069566063dSJacob Faibussowitsch       PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]));
40712adca46SMatthew G. Knepley       off += nids[b];
40812adca46SMatthew G. Knepley     }
40912adca46SMatthew G. Knepley   }
4103b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
411606c1a1cSJacob Faibussowitsch   for (i = 0; i < m; ++i) {
412b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
4135a0e29b9SJacob Faibussowitsch 
4149566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
4159566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1));
4165a0e29b9SJacob Faibussowitsch     for (j = i + 1; j < m; ++j) {
417b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
4189566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
4195a0e29b9SJacob Faibussowitsch     }
42012adca46SMatthew G. Knepley   }
4219566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp));
4229566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
4239566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mode, dots));
4243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42512adca46SMatthew G. Knepley }
42612adca46SMatthew G. Knepley 
427b29cfa1cSToby Isaac /*@
428b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
429b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
430a4e35b19SJacob Faibussowitsch   evaluating the dual space basis of that point.
431b29cfa1cSToby Isaac 
432b29cfa1cSToby Isaac   Input Parameters:
433a1cb98faSBarry Smith + dm     - the `DMPLEX` object
434b29cfa1cSToby Isaac - height - the maximum projection height >= 0
435b29cfa1cSToby Isaac 
436b29cfa1cSToby Isaac   Level: advanced
437b29cfa1cSToby Isaac 
438a4e35b19SJacob Faibussowitsch   Notes:
439a4e35b19SJacob Faibussowitsch   A basis function is associated with the point in its transitively-closed support whose mesh
440a4e35b19SJacob Faibussowitsch   height is highest (w.r.t. DAG height), but not greater than the maximum projection height,
441a4e35b19SJacob Faibussowitsch   which is set with this function.  By default, the maximum projection height is zero, which
442a4e35b19SJacob Faibussowitsch   means that only mesh cells are used to project basis functions.  A height of one, for
443a4e35b19SJacob Faibussowitsch   example, evaluates a cell-interior basis functions using its cells dual space basis, but all
444a4e35b19SJacob Faibussowitsch   other basis functions with the dual space basis of a face.
445a4e35b19SJacob Faibussowitsch 
4461cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
447b29cfa1cSToby Isaac @*/
448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
449d71ae5a4SJacob Faibussowitsch {
450b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
451b29cfa1cSToby Isaac 
452b29cfa1cSToby Isaac   PetscFunctionBegin;
453b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
454b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
4553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
456b29cfa1cSToby Isaac }
457b29cfa1cSToby Isaac 
458b29cfa1cSToby Isaac /*@
459b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
460b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
461b29cfa1cSToby Isaac 
4622fe279fdSBarry Smith   Input Parameter:
463a1cb98faSBarry Smith . dm - the `DMPLEX` object
464b29cfa1cSToby Isaac 
4652fe279fdSBarry Smith   Output Parameter:
466b29cfa1cSToby Isaac . height - the maximum projection height
467b29cfa1cSToby Isaac 
468b29cfa1cSToby Isaac   Level: intermediate
469b29cfa1cSToby Isaac 
4701cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
471b29cfa1cSToby Isaac @*/
472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
473d71ae5a4SJacob Faibussowitsch {
474b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
475b29cfa1cSToby Isaac 
476b29cfa1cSToby Isaac   PetscFunctionBegin;
477b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
478b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
4793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
480b29cfa1cSToby Isaac }
481b29cfa1cSToby Isaac 
482ca3d3a14SMatthew G. Knepley typedef struct {
483ca3d3a14SMatthew G. Knepley   PetscReal    alpha; /* The first Euler angle, and in 2D the only one */
484ca3d3a14SMatthew G. Knepley   PetscReal    beta;  /* The second Euler angle */
485ca3d3a14SMatthew G. Knepley   PetscReal    gamma; /* The third Euler angle */
486ca3d3a14SMatthew G. Knepley   PetscInt     dim;   /* The dimension of R */
487ca3d3a14SMatthew G. Knepley   PetscScalar *R;     /* The rotation matrix, transforming a vector in the local basis to the global basis */
488ca3d3a14SMatthew G. Knepley   PetscScalar *RT;    /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */
489ca3d3a14SMatthew G. Knepley } RotCtx;
490ca3d3a14SMatthew G. Knepley 
491ca3d3a14SMatthew G. Knepley /*
492ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
493ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
494ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
495ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
496ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
497ca3d3a14SMatthew G. Knepley */
498d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx)
499d71ae5a4SJacob Faibussowitsch {
500ca3d3a14SMatthew G. Knepley   RotCtx   *rc  = (RotCtx *)ctx;
501ca3d3a14SMatthew G. Knepley   PetscInt  dim = rc->dim;
502ca3d3a14SMatthew G. Knepley   PetscReal c1, s1, c2, s2, c3, s3;
503ca3d3a14SMatthew G. Knepley 
504ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT));
506ca3d3a14SMatthew G. Knepley   switch (dim) {
507ca3d3a14SMatthew G. Knepley   case 2:
5089371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
5099371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
5109371c9d4SSatish Balay     rc->R[0] = c1;
5119371c9d4SSatish Balay     rc->R[1] = s1;
5129371c9d4SSatish Balay     rc->R[2] = -s1;
5139371c9d4SSatish Balay     rc->R[3] = c1;
5149566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
515b458e8f1SJose E. Roman     DMPlex_Transpose2D_Internal(rc->RT);
516ca3d3a14SMatthew G. Knepley     break;
517ca3d3a14SMatthew G. Knepley   case 3:
5189371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
5199371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
5209371c9d4SSatish Balay     c2       = PetscCosReal(rc->beta);
5219371c9d4SSatish Balay     s2       = PetscSinReal(rc->beta);
5229371c9d4SSatish Balay     c3       = PetscCosReal(rc->gamma);
5239371c9d4SSatish Balay     s3       = PetscSinReal(rc->gamma);
5249371c9d4SSatish Balay     rc->R[0] = c1 * c3 - c2 * s1 * s3;
5259371c9d4SSatish Balay     rc->R[1] = c3 * s1 + c1 * c2 * s3;
5269371c9d4SSatish Balay     rc->R[2] = s2 * s3;
5279371c9d4SSatish Balay     rc->R[3] = -c1 * s3 - c2 * c3 * s1;
5289371c9d4SSatish Balay     rc->R[4] = c1 * c2 * c3 - s1 * s3;
5299371c9d4SSatish Balay     rc->R[5] = c3 * s2;
5309371c9d4SSatish Balay     rc->R[6] = s1 * s2;
5319371c9d4SSatish Balay     rc->R[7] = -c1 * s2;
5329371c9d4SSatish Balay     rc->R[8] = c2;
5339566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
534b458e8f1SJose E. Roman     DMPlex_Transpose3D_Internal(rc->RT);
535ca3d3a14SMatthew G. Knepley     break;
536d71ae5a4SJacob Faibussowitsch   default:
537d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim);
538ca3d3a14SMatthew G. Knepley   }
5393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
540ca3d3a14SMatthew G. Knepley }
541ca3d3a14SMatthew G. Knepley 
542d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx)
543d71ae5a4SJacob Faibussowitsch {
544ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
545ca3d3a14SMatthew G. Knepley 
546ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5479566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rc->R, rc->RT));
5489566063dSJacob Faibussowitsch   PetscCall(PetscFree(rc));
5493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
550ca3d3a14SMatthew G. Knepley }
551ca3d3a14SMatthew G. Knepley 
552d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx)
553d71ae5a4SJacob Faibussowitsch {
554ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
555ca3d3a14SMatthew G. Knepley 
556ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5574f572ea9SToby Isaac   PetscAssertPointer(ctx, 5);
5589371c9d4SSatish Balay   if (l2g) {
5599371c9d4SSatish Balay     *A = rc->R;
5609371c9d4SSatish Balay   } else {
5619371c9d4SSatish Balay     *A = rc->RT;
5629371c9d4SSatish Balay   }
5633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
564ca3d3a14SMatthew G. Knepley }
565ca3d3a14SMatthew G. Knepley 
566d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
567d71ae5a4SJacob Faibussowitsch {
568ec277c0fSMatthew G. Knepley   PetscFunctionBegin;
569ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX)
570ab6a9622SMatthew G. Knepley   switch (dim) {
5719371c9d4SSatish Balay   case 2: {
57227104ee2SJacob Faibussowitsch     PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0};
573ab6a9622SMatthew G. Knepley 
5749566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
5759371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
5769371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
5779371c9d4SSatish Balay   } break;
5789371c9d4SSatish Balay   case 3: {
57927104ee2SJacob Faibussowitsch     PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0};
580ab6a9622SMatthew G. Knepley 
5819566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
5829371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
5839371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
5849371c9d4SSatish Balay     z[2] = PetscRealPart(zt[2]);
5859371c9d4SSatish Balay   } break;
586ab6a9622SMatthew G. Knepley   }
587ab6a9622SMatthew G. Knepley #else
5889566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx));
589ab6a9622SMatthew G. Knepley #endif
5903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
591ab6a9622SMatthew G. Knepley }
592ab6a9622SMatthew G. Knepley 
593d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx)
594d71ae5a4SJacob Faibussowitsch {
595ca3d3a14SMatthew G. Knepley   const PetscScalar *A;
596ca3d3a14SMatthew G. Knepley 
597ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5989566063dSJacob Faibussowitsch   PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx));
599ca3d3a14SMatthew G. Knepley   switch (dim) {
600d71ae5a4SJacob Faibussowitsch   case 2:
601d71ae5a4SJacob Faibussowitsch     DMPlex_Mult2D_Internal(A, 1, y, z);
602d71ae5a4SJacob Faibussowitsch     break;
603d71ae5a4SJacob Faibussowitsch   case 3:
604d71ae5a4SJacob Faibussowitsch     DMPlex_Mult3D_Internal(A, 1, y, z);
605d71ae5a4SJacob Faibussowitsch     break;
606ca3d3a14SMatthew G. Knepley   }
6073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
608ca3d3a14SMatthew G. Knepley }
609ca3d3a14SMatthew G. Knepley 
610d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a)
611d71ae5a4SJacob Faibussowitsch {
612ca3d3a14SMatthew G. Knepley   PetscSection       ts;
613ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tva;
614ca3d3a14SMatthew G. Knepley   PetscInt           dof;
615ca3d3a14SMatthew G. Knepley 
616ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6179566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6189566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
6199566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
6209566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva));
621ca3d3a14SMatthew G. Knepley   if (l2g) {
622ca3d3a14SMatthew G. Knepley     switch (dof) {
623d71ae5a4SJacob Faibussowitsch     case 4:
624d71ae5a4SJacob Faibussowitsch       DMPlex_Mult2D_Internal(tva, 1, a, a);
625d71ae5a4SJacob Faibussowitsch       break;
626d71ae5a4SJacob Faibussowitsch     case 9:
627d71ae5a4SJacob Faibussowitsch       DMPlex_Mult3D_Internal(tva, 1, a, a);
628d71ae5a4SJacob Faibussowitsch       break;
629ca3d3a14SMatthew G. Knepley     }
630ca3d3a14SMatthew G. Knepley   } else {
631ca3d3a14SMatthew G. Knepley     switch (dof) {
632d71ae5a4SJacob Faibussowitsch     case 4:
633d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose2D_Internal(tva, 1, a, a);
634d71ae5a4SJacob Faibussowitsch       break;
635d71ae5a4SJacob Faibussowitsch     case 9:
636d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose3D_Internal(tva, 1, a, a);
637d71ae5a4SJacob Faibussowitsch       break;
638ca3d3a14SMatthew G. Knepley     }
639ca3d3a14SMatthew G. Knepley   }
6409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
642ca3d3a14SMatthew G. Knepley }
643ca3d3a14SMatthew G. Knepley 
644d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a)
645d71ae5a4SJacob Faibussowitsch {
646ca3d3a14SMatthew G. Knepley   PetscSection       s, ts;
647ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tvaf, *tvag;
648ca3d3a14SMatthew G. Knepley   PetscInt           fdof, gdof, fpdof, gpdof;
649ca3d3a14SMatthew G. Knepley 
650ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
6519566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6529566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6539566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof));
6549566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof));
6559566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof));
6569566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof));
6579566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
6589566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf));
6599566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag));
660ca3d3a14SMatthew G. Knepley   if (l2g) {
661ca3d3a14SMatthew G. Knepley     switch (fdof) {
662d71ae5a4SJacob Faibussowitsch     case 4:
663d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);
664d71ae5a4SJacob Faibussowitsch       break;
665d71ae5a4SJacob Faibussowitsch     case 9:
666d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);
667d71ae5a4SJacob Faibussowitsch       break;
668ca3d3a14SMatthew G. Knepley     }
669ca3d3a14SMatthew G. Knepley     switch (gdof) {
670d71ae5a4SJacob Faibussowitsch     case 4:
671d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);
672d71ae5a4SJacob Faibussowitsch       break;
673d71ae5a4SJacob Faibussowitsch     case 9:
674d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);
675d71ae5a4SJacob Faibussowitsch       break;
676ca3d3a14SMatthew G. Knepley     }
677ca3d3a14SMatthew G. Knepley   } else {
678ca3d3a14SMatthew G. Knepley     switch (fdof) {
679d71ae5a4SJacob Faibussowitsch     case 4:
680d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);
681d71ae5a4SJacob Faibussowitsch       break;
682d71ae5a4SJacob Faibussowitsch     case 9:
683d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);
684d71ae5a4SJacob Faibussowitsch       break;
685ca3d3a14SMatthew G. Knepley     }
686ca3d3a14SMatthew G. Knepley     switch (gdof) {
687d71ae5a4SJacob Faibussowitsch     case 4:
688d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);
689d71ae5a4SJacob Faibussowitsch       break;
690d71ae5a4SJacob Faibussowitsch     case 9:
691d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);
692d71ae5a4SJacob Faibussowitsch       break;
693ca3d3a14SMatthew G. Knepley     }
694ca3d3a14SMatthew G. Knepley   }
6959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
6963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
697ca3d3a14SMatthew G. Knepley }
698ca3d3a14SMatthew G. Knepley 
699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a)
700d71ae5a4SJacob Faibussowitsch {
701ca3d3a14SMatthew G. Knepley   PetscSection    s;
702ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
703ca3d3a14SMatthew G. Knepley   IS              clPoints;
704ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
705ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
706ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, Np, cp, dof, d = 0;
707ca3d3a14SMatthew G. Knepley 
708ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7099566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7109566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
71107218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
712ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
713ca3d3a14SMatthew G. Knepley     for (cp = 0; cp < Np * 2; cp += 2) {
7149566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof));
715ca3d3a14SMatthew G. Knepley       if (!dof) continue;
7169566063dSJacob Faibussowitsch       if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]));
717ca3d3a14SMatthew G. Knepley       d += dof;
718ca3d3a14SMatthew G. Knepley     }
719ca3d3a14SMatthew G. Knepley   }
7209566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
7213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
722ca3d3a14SMatthew G. Knepley }
723ca3d3a14SMatthew G. Knepley 
724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a)
725d71ae5a4SJacob Faibussowitsch {
726ca3d3a14SMatthew G. Knepley   PetscSection    s;
727ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
728ca3d3a14SMatthew G. Knepley   IS              clPoints;
729ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
730ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
7318bdb3c71SMatthew G. Knepley   PetscInt        Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0;
732ca3d3a14SMatthew G. Knepley 
733ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7349566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7359566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
73607218a29SMatthew G. Knepley   PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp));
737ca3d3a14SMatthew G. Knepley   for (f = 0, r = 0; f < Nf; ++f) {
738ca3d3a14SMatthew G. Knepley     for (cpf = 0; cpf < Np * 2; cpf += 2) {
7399566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof));
740ca3d3a14SMatthew G. Knepley       for (g = 0, c = 0; g < Nf; ++g) {
741ca3d3a14SMatthew G. Knepley         for (cpg = 0; cpg < Np * 2; cpg += 2) {
7429566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof));
7439566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c]));
744ca3d3a14SMatthew G. Knepley           c += gdof;
745ca3d3a14SMatthew G. Knepley         }
746ca3d3a14SMatthew G. Knepley       }
74763a3b9bcSJacob Faibussowitsch       PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
748ca3d3a14SMatthew G. Knepley       r += fdof;
749ca3d3a14SMatthew G. Knepley     }
750ca3d3a14SMatthew G. Knepley   }
75163a3b9bcSJacob Faibussowitsch   PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
7529566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
7533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
754ca3d3a14SMatthew G. Knepley }
755ca3d3a14SMatthew G. Knepley 
756d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g)
757d71ae5a4SJacob Faibussowitsch {
758ca3d3a14SMatthew G. Knepley   DM                 tdm;
759ca3d3a14SMatthew G. Knepley   Vec                tv;
760ca3d3a14SMatthew G. Knepley   PetscSection       ts, s;
761ca3d3a14SMatthew G. Knepley   const PetscScalar *ta;
762ca3d3a14SMatthew G. Knepley   PetscScalar       *a, *va;
763ca3d3a14SMatthew G. Knepley   PetscInt           pStart, pEnd, p, Nf, f;
764ca3d3a14SMatthew G. Knepley 
765ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
7669566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
7679566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
7689566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
7699566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
7709566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
7719566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
7729566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lv, &a));
7739566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
774ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
775ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
7769566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va));
7779566063dSJacob Faibussowitsch       PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va));
778ca3d3a14SMatthew G. Knepley     }
779ca3d3a14SMatthew G. Knepley   }
7809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lv, &a));
7819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
7823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
783ca3d3a14SMatthew G. Knepley }
784ca3d3a14SMatthew G. Knepley 
785ca3d3a14SMatthew G. Knepley /*@
786ca3d3a14SMatthew G. Knepley   DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis
787ca3d3a14SMatthew G. Knepley 
788ca3d3a14SMatthew G. Knepley   Input Parameters:
789a1cb98faSBarry Smith + dm - The `DM`
790ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis
791ca3d3a14SMatthew G. Knepley 
7922fe279fdSBarry Smith   Output Parameter:
793ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis
794ca3d3a14SMatthew G. Knepley 
795ca3d3a14SMatthew G. Knepley   Level: developer
796ca3d3a14SMatthew G. Knepley 
797a1cb98faSBarry Smith   Note:
798a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
799a1cb98faSBarry Smith 
8001cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
801ca3d3a14SMatthew G. Knepley @*/
802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv)
803d71ae5a4SJacob Faibussowitsch {
804ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
805ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
806ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
8079566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE));
8083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
809ca3d3a14SMatthew G. Knepley }
810ca3d3a14SMatthew G. Knepley 
811ca3d3a14SMatthew G. Knepley /*@
812ca3d3a14SMatthew G. Knepley   DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis
813ca3d3a14SMatthew G. Knepley 
814ca3d3a14SMatthew G. Knepley   Input Parameters:
815a1cb98faSBarry Smith + dm - The `DM`
816ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis
817ca3d3a14SMatthew G. Knepley 
8182fe279fdSBarry Smith   Output Parameter:
819ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis
820ca3d3a14SMatthew G. Knepley 
821ca3d3a14SMatthew G. Knepley   Level: developer
822ca3d3a14SMatthew G. Knepley 
823a1cb98faSBarry Smith   Note:
824a1cb98faSBarry Smith   This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
825a1cb98faSBarry Smith 
8261cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
827ca3d3a14SMatthew G. Knepley @*/
828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv)
829d71ae5a4SJacob Faibussowitsch {
830ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
831ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
832ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
8339566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE));
8343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
835ca3d3a14SMatthew G. Knepley }
836ca3d3a14SMatthew G. Knepley 
837ca3d3a14SMatthew G. Knepley /*@
838ca3d3a14SMatthew G. Knepley   DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions
839ca3d3a14SMatthew G. Knepley   and global solutions, to a local basis, appropriate for discretization integrals and assembly.
840ca3d3a14SMatthew G. Knepley 
841ca3d3a14SMatthew G. Knepley   Input Parameters:
842a1cb98faSBarry Smith + dm    - The `DM`
843ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one
844ca3d3a14SMatthew G. Knepley . beta  - The second Euler angle
845f0fc11ceSJed Brown - gamma - The third Euler angle
846ca3d3a14SMatthew G. Knepley 
847ca3d3a14SMatthew G. Knepley   Level: developer
848ca3d3a14SMatthew G. Knepley 
849a1cb98faSBarry Smith   Note:
850a1cb98faSBarry Smith   Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
851a1cb98faSBarry Smith   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows
852a1cb98faSBarry Smith .vb
853a1cb98faSBarry Smith    The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
854a1cb98faSBarry Smith    The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
855a1cb98faSBarry Smith    The XYZ system rotates a third time about the z axis by gamma.
856a1cb98faSBarry Smith .ve
857a1cb98faSBarry Smith 
8581cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`
859ca3d3a14SMatthew G. Knepley @*/
860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma)
861d71ae5a4SJacob Faibussowitsch {
862ca3d3a14SMatthew G. Knepley   RotCtx  *rc;
863ca3d3a14SMatthew G. Knepley   PetscInt cdim;
864ca3d3a14SMatthew G. Knepley 
865362febeeSStefano Zampini   PetscFunctionBegin;
8669566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
8679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &rc));
868ca3d3a14SMatthew G. Knepley   dm->transformCtx       = rc;
869ca3d3a14SMatthew G. Knepley   dm->transformSetUp     = DMPlexBasisTransformSetUp_Rotation_Internal;
870ca3d3a14SMatthew G. Knepley   dm->transformDestroy   = DMPlexBasisTransformDestroy_Rotation_Internal;
871ca3d3a14SMatthew G. Knepley   dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal;
872ca3d3a14SMatthew G. Knepley   rc->dim                = cdim;
873ca3d3a14SMatthew G. Knepley   rc->alpha              = alpha;
874ca3d3a14SMatthew G. Knepley   rc->beta               = beta;
875ca3d3a14SMatthew G. Knepley   rc->gamma              = gamma;
8769566063dSJacob Faibussowitsch   PetscCall((*dm->transformSetUp)(dm, dm->transformCtx));
8779566063dSJacob Faibussowitsch   PetscCall(DMConstructBasisTransform_Internal(dm));
8783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
879ca3d3a14SMatthew G. Knepley }
880ca3d3a14SMatthew G. Knepley 
881b278463cSMatthew G. Knepley /*@C
882ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates
883b278463cSMatthew G. Knepley 
884b278463cSMatthew G. Knepley   Input Parameters:
885a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
886b278463cSMatthew G. Knepley . time   - The time
887b278463cSMatthew G. Knepley . field  - The field to constrain
8881c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
88920f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
890a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
891a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
892b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
893b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
894b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
895b278463cSMatthew G. Knepley 
896b278463cSMatthew G. Knepley   Output Parameter:
897b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
898b278463cSMatthew G. Knepley 
899b278463cSMatthew G. Knepley   Level: developer
900b278463cSMatthew G. Knepley 
9011cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
902b278463cSMatthew G. Knepley @*/
903d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
904d71ae5a4SJacob Faibussowitsch {
9050163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
90655f2e967SMatthew G. Knepley   void   **ctxs;
907d7ddef95SMatthew G. Knepley   PetscInt numFields;
908d7ddef95SMatthew G. Knepley 
909d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
9109566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9119566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
912d7ddef95SMatthew G. Knepley   funcs[field] = func;
913d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
9149566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX));
9159566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
917d7ddef95SMatthew G. Knepley }
918d7ddef95SMatthew G. Knepley 
919b278463cSMatthew G. Knepley /*@C
920ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data
921b278463cSMatthew G. Knepley 
922b278463cSMatthew G. Knepley   Input Parameters:
923a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
924b278463cSMatthew G. Knepley . time   - The time
925b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
926b278463cSMatthew G. Knepley . field  - The field to constrain
9271c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
92820f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
929a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
930a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
931b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
932b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
933b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
934b278463cSMatthew G. Knepley 
935b278463cSMatthew G. Knepley   Output Parameter:
936b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
937b278463cSMatthew G. Knepley 
938b278463cSMatthew G. Knepley   Level: developer
939b278463cSMatthew G. Knepley 
9401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
941b278463cSMatthew G. Knepley @*/
942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
943d71ae5a4SJacob Faibussowitsch {
9449371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
945c60e475cSMatthew G. Knepley   void   **ctxs;
946c60e475cSMatthew G. Knepley   PetscInt numFields;
947c60e475cSMatthew G. Knepley 
948c60e475cSMatthew G. Knepley   PetscFunctionBegin;
9499566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
951c60e475cSMatthew G. Knepley   funcs[field] = func;
952c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
9539566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
9549566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
956c60e475cSMatthew G. Knepley }
957c60e475cSMatthew G. Knepley 
958b278463cSMatthew G. Knepley /*@C
959d5b43468SJose E. Roman   DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data
960ece3a9fcSMatthew G. Knepley 
96120f4b53cSBarry Smith   Collective
962ece3a9fcSMatthew G. Knepley 
963ece3a9fcSMatthew G. Knepley   Input Parameters:
964a1cb98faSBarry Smith + dm     - The `DM`, with a `PetscDS` that matches the problem being constrained
965ece3a9fcSMatthew G. Knepley . time   - The time
966ece3a9fcSMatthew G. Knepley . locU   - A local vector with the input solution values
967ece3a9fcSMatthew G. Knepley . field  - The field to constrain
968ece3a9fcSMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
96920f4b53cSBarry Smith . comps  - An array of constrained component numbers, or `NULL` for all components
970a1cb98faSBarry Smith . label  - The `DMLabel` defining constrained points
971a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points
972ece3a9fcSMatthew G. Knepley . ids    - An array of ids for constrained points
97320f4b53cSBarry Smith . func   - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()`
97420f4b53cSBarry Smith - ctx    - An optional user context for `func`
975ece3a9fcSMatthew G. Knepley 
976ece3a9fcSMatthew G. Knepley   Output Parameter:
977ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values
978ece3a9fcSMatthew G. Knepley 
979ece3a9fcSMatthew G. Knepley   Level: developer
980ece3a9fcSMatthew G. Knepley 
9811cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
982ece3a9fcSMatthew G. Knepley @*/
983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
984d71ae5a4SJacob Faibussowitsch {
9859371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
986ece3a9fcSMatthew G. Knepley   void   **ctxs;
987ece3a9fcSMatthew G. Knepley   PetscInt numFields;
988ece3a9fcSMatthew G. Knepley 
989ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
9909566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
9919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
992ece3a9fcSMatthew G. Knepley   funcs[field] = func;
993ece3a9fcSMatthew G. Knepley   ctxs[field]  = ctx;
9949566063dSJacob Faibussowitsch   PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
9959566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
9963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
997ece3a9fcSMatthew G. Knepley }
998ece3a9fcSMatthew G. Knepley 
999ece3a9fcSMatthew G. Knepley /*@C
1000b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
1001b278463cSMatthew G. Knepley 
1002b278463cSMatthew G. Knepley   Input Parameters:
1003a1cb98faSBarry Smith + dm           - The `DM`, with a `PetscDS` that matches the problem being constrained
1004b278463cSMatthew G. Knepley . time         - The time
1005b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
1006b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
1007b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
1008b278463cSMatthew G. Knepley . field        - The field to constrain
10091c531cf8SMatthew G. Knepley . Nc           - The number of constrained field components, or 0 for all components
101020f4b53cSBarry Smith . comps        - An array of constrained component numbers, or `NULL` for all components
1011a1cb98faSBarry Smith . label        - The `DMLabel` defining constrained points
1012a1cb98faSBarry Smith . numids       - The number of `DMLabel` ids for constrained points
1013b278463cSMatthew G. Knepley . ids          - An array of ids for constrained points
1014b278463cSMatthew G. Knepley . func         - A pointwise function giving boundary values
1015b278463cSMatthew G. Knepley - ctx          - An optional user context for bcFunc
1016b278463cSMatthew G. Knepley 
1017b278463cSMatthew G. Knepley   Output Parameter:
1018b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values
1019b278463cSMatthew G. Knepley 
1020b278463cSMatthew G. Knepley   Level: developer
1021b278463cSMatthew G. Knepley 
1022a1cb98faSBarry Smith   Note:
1023a1cb98faSBarry Smith   This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()`
1024a1cb98faSBarry Smith 
10251cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
1026b278463cSMatthew G. Knepley @*/
1027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX)
1028d71ae5a4SJacob Faibussowitsch {
102961f58d28SMatthew G. Knepley   PetscDS            prob;
1030da97024aSMatthew G. Knepley   PetscSF            sf;
1031d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
103220369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
1033da97024aSMatthew G. Knepley   const PetscInt    *leaves;
1034d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
1035520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
10363ba16761SJacob Faibussowitsch   PetscErrorCode     ierru = PETSC_SUCCESS;
1037d7ddef95SMatthew G. Knepley 
1038d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
10399566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
10409566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
1041da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
10429566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
10439566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
10449566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10459566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
10469566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
104720369375SToby Isaac   if (cellGeometry) {
10489566063dSJacob Faibussowitsch     PetscCall(VecGetDM(cellGeometry, &dmCell));
10499566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
105020369375SToby Isaac   }
1051d7ddef95SMatthew G. Knepley   if (Grad) {
1052c0a6632aSMatthew G. Knepley     PetscFV fv;
1053c0a6632aSMatthew G. Knepley 
10549566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv));
10559566063dSJacob Faibussowitsch     PetscCall(VecGetDM(Grad, &dmGrad));
10569566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(Grad, &grad));
10579566063dSJacob Faibussowitsch     PetscCall(PetscFVGetNumComponents(fv, &pdim));
10589566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx));
1059d7ddef95SMatthew G. Knepley   }
10609566063dSJacob Faibussowitsch   PetscCall(VecGetArray(locX, &x));
1061d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
1062d7ddef95SMatthew G. Knepley     IS              faceIS;
1063d7ddef95SMatthew G. Knepley     const PetscInt *faces;
1064d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
1065d7ddef95SMatthew G. Knepley 
10669566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS));
1067d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
10689566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
10699566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
1070d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
1071d7ddef95SMatthew G. Knepley       const PetscInt   face = faces[f], *cells;
1072640bce14SSatish Balay       PetscFVFaceGeom *fg;
1073d7ddef95SMatthew G. Knepley 
1074d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
10759566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc));
1076da97024aSMatthew G. Knepley       if (loc >= 0) continue;
10779566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
10789566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, face, &cells));
1079d7ddef95SMatthew G. Knepley       if (Grad) {
1080640bce14SSatish Balay         PetscFVCellGeom *cg;
1081640bce14SSatish Balay         PetscScalar     *cx, *cgrad;
1082d7ddef95SMatthew G. Knepley         PetscScalar     *xG;
1083d7ddef95SMatthew G. Knepley         PetscReal        dx[3];
1084d7ddef95SMatthew G. Knepley         PetscInt         d;
1085d7ddef95SMatthew G. Knepley 
10869566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg));
10879566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx));
10889566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad));
10899566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
1090d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
1091d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx);
10929566063dSJacob Faibussowitsch         PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx));
1093d7ddef95SMatthew G. Knepley       } else {
1094640bce14SSatish Balay         PetscScalar *xI;
1095d7ddef95SMatthew G. Knepley         PetscScalar *xG;
1096d7ddef95SMatthew G. Knepley 
10979566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI));
10989566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
1099e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
1100e735a8a9SMatthew G. Knepley         if (ierru) {
11019566063dSJacob Faibussowitsch           PetscCall(ISRestoreIndices(faceIS, &faces));
11029566063dSJacob Faibussowitsch           PetscCall(ISDestroy(&faceIS));
1103e735a8a9SMatthew G. Knepley           goto cleanup;
1104e735a8a9SMatthew G. Knepley         }
1105d7ddef95SMatthew G. Knepley       }
1106d7ddef95SMatthew G. Knepley     }
11079566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
11089566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
1109d7ddef95SMatthew G. Knepley   }
1110e735a8a9SMatthew G. Knepley cleanup:
11119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(locX, &x));
1112d7ddef95SMatthew G. Knepley   if (Grad) {
11139566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx));
11149566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(Grad, &grad));
1115d7ddef95SMatthew G. Knepley   }
11169566063dSJacob Faibussowitsch   if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
11179566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
11189566063dSJacob Faibussowitsch   PetscCall(ierru);
11193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1120d7ddef95SMatthew G. Knepley }
1121d7ddef95SMatthew G. Knepley 
1122d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
1123d71ae5a4SJacob Faibussowitsch {
11240c364540SMatthew G. Knepley   PetscInt c;
11250c364540SMatthew G. Knepley   for (c = 0; c < Nc; ++c) u[c] = 0.0;
11263ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
11270c364540SMatthew G. Knepley }
11280c364540SMatthew G. Knepley 
1129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1130d71ae5a4SJacob Faibussowitsch {
11310c364540SMatthew G. Knepley   PetscObject isZero;
1132e5e52638SMatthew G. Knepley   PetscDS     prob;
1133d7ddef95SMatthew G. Knepley   PetscInt    numBd, b;
113455f2e967SMatthew G. Knepley 
113555f2e967SMatthew G. Knepley   PetscFunctionBegin;
11369566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
11379566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
11389566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
1139450c7a9fSMatthew G. Knepley   PetscCall(PetscDSUpdateBoundaryLabels(prob, dm));
114055f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
114145480ffeSMatthew G. Knepley     PetscWeakForm           wf;
1142f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
114345480ffeSMatthew G. Knepley     const char             *name;
1144d7ddef95SMatthew G. Knepley     DMLabel                 label;
11451c531cf8SMatthew G. Knepley     PetscInt                field, Nc;
11461c531cf8SMatthew G. Knepley     const PetscInt         *comps;
1147d7ddef95SMatthew G. Knepley     PetscObject             obj;
1148d7ddef95SMatthew G. Knepley     PetscClassId            id;
114945480ffeSMatthew G. Knepley     void (*bvfunc)(void);
1150d7ddef95SMatthew G. Knepley     PetscInt        numids;
1151d7ddef95SMatthew G. Knepley     const PetscInt *ids;
115255f2e967SMatthew G. Knepley     void           *ctx;
115355f2e967SMatthew G. Knepley 
11549566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
1155f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
11569566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
11579566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1158d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1159c60e475cSMatthew G. Knepley       switch (type) {
1160c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
11619371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
11628434afd1SBarry Smith         PetscSimplePointFn *func = (PetscSimplePointFn *)bvfunc;
116345480ffeSMatthew G. Knepley 
116445480ffeSMatthew G. Knepley         if (isZero) func = zero;
11659566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11669566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX));
11679566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11689371c9d4SSatish Balay       } break;
11699371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
1170*2192575eSBarry Smith         PetscPointFn *func = (PetscPointFn *)bvfunc;
117145480ffeSMatthew G. Knepley 
11729566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11739566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX));
11749566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11759371c9d4SSatish Balay       } break;
1176d71ae5a4SJacob Faibussowitsch       default:
1177d71ae5a4SJacob Faibussowitsch         break;
1178c60e475cSMatthew G. Knepley       }
1179d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
118045480ffeSMatthew G. Knepley       {
118145480ffeSMatthew G. Knepley         PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode (*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc;
118245480ffeSMatthew G. Knepley 
118343ea7facSMatthew G. Knepley         if (!faceGeomFVM) continue;
11849566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX));
118545480ffeSMatthew G. Knepley       }
118663a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
118755f2e967SMatthew G. Knepley   }
11883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
118955f2e967SMatthew G. Knepley }
119055f2e967SMatthew G. Knepley 
1191d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1192d71ae5a4SJacob Faibussowitsch {
119356cf3b9cSMatthew G. Knepley   PetscObject isZero;
119456cf3b9cSMatthew G. Knepley   PetscDS     prob;
119556cf3b9cSMatthew G. Knepley   PetscInt    numBd, b;
119656cf3b9cSMatthew G. Knepley 
119756cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
11983ba16761SJacob Faibussowitsch   if (!locX) PetscFunctionReturn(PETSC_SUCCESS);
11999566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
12009566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
12019566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
120256cf3b9cSMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
120345480ffeSMatthew G. Knepley     PetscWeakForm           wf;
120456cf3b9cSMatthew G. Knepley     DMBoundaryConditionType type;
120545480ffeSMatthew G. Knepley     const char             *name;
120656cf3b9cSMatthew G. Knepley     DMLabel                 label;
120756cf3b9cSMatthew G. Knepley     PetscInt                field, Nc;
120856cf3b9cSMatthew G. Knepley     const PetscInt         *comps;
120956cf3b9cSMatthew G. Knepley     PetscObject             obj;
121056cf3b9cSMatthew G. Knepley     PetscClassId            id;
121156cf3b9cSMatthew G. Knepley     PetscInt                numids;
121256cf3b9cSMatthew G. Knepley     const PetscInt         *ids;
121345480ffeSMatthew G. Knepley     void (*bvfunc)(void);
121456cf3b9cSMatthew G. Knepley     void *ctx;
121556cf3b9cSMatthew G. Knepley 
12169566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx));
121756cf3b9cSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
12189566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
12199566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
122056cf3b9cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
122156cf3b9cSMatthew G. Knepley       switch (type) {
122256cf3b9cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
12239371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
12248434afd1SBarry Smith         PetscSimplePointFn *func_t = (PetscSimplePointFn *)bvfunc;
122545480ffeSMatthew G. Knepley 
122645480ffeSMatthew G. Knepley         if (isZero) func_t = zero;
12279566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
12289566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
12299566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
12309371c9d4SSatish Balay       } break;
12319371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
1232*2192575eSBarry Smith         PetscPointFn *func_t = (PetscPointFn *)bvfunc;
123345480ffeSMatthew G. Knepley 
12349566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
12359566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
12369566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
12379371c9d4SSatish Balay       } break;
1238d71ae5a4SJacob Faibussowitsch       default:
1239d71ae5a4SJacob Faibussowitsch         break;
124056cf3b9cSMatthew G. Knepley       }
124163a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
124256cf3b9cSMatthew G. Knepley   }
12433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
124456cf3b9cSMatthew G. Knepley }
124556cf3b9cSMatthew G. Knepley 
124601468941SMatthew G. Knepley PetscErrorCode DMPlexInsertBounds_Plex(DM dm, PetscBool lower, PetscReal time, Vec locB)
124701468941SMatthew G. Knepley {
124801468941SMatthew G. Knepley   PetscDS  ds;
124901468941SMatthew G. Knepley   PetscInt numBd;
125001468941SMatthew G. Knepley 
125101468941SMatthew G. Knepley   PetscFunctionBegin;
125201468941SMatthew G. Knepley   PetscCall(DMGetDS(dm, &ds));
125301468941SMatthew G. Knepley   PetscCall(PetscDSGetNumBoundary(ds, &numBd));
125401468941SMatthew G. Knepley   PetscCall(PetscDSUpdateBoundaryLabels(ds, dm));
125501468941SMatthew G. Knepley   for (PetscInt b = 0; b < numBd; ++b) {
125601468941SMatthew G. Knepley     PetscWeakForm           wf;
125701468941SMatthew G. Knepley     DMBoundaryConditionType type;
125801468941SMatthew G. Knepley     const char             *name;
125901468941SMatthew G. Knepley     DMLabel                 label;
126001468941SMatthew G. Knepley     PetscInt                numids;
126101468941SMatthew G. Knepley     const PetscInt         *ids;
126201468941SMatthew G. Knepley     PetscInt                field, Nc;
126301468941SMatthew G. Knepley     const PetscInt         *comps;
126401468941SMatthew G. Knepley     void (*bvfunc)(void);
126501468941SMatthew G. Knepley     void *ctx;
126601468941SMatthew G. Knepley 
126701468941SMatthew G. Knepley     PetscCall(PetscDSGetBoundary(ds, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
126801468941SMatthew G. Knepley     if (lower && type != DM_BC_LOWER_BOUND) continue;
126901468941SMatthew G. Knepley     if (!lower && type != DM_BC_UPPER_BOUND) continue;
127001468941SMatthew G. Knepley     PetscCall(DMPlexLabelAddCells(dm, label));
127101468941SMatthew G. Knepley     {
127201468941SMatthew G. Knepley       PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
127301468941SMatthew G. Knepley       void   **ctxs;
127401468941SMatthew G. Knepley       PetscInt Nf;
127501468941SMatthew G. Knepley 
127601468941SMatthew G. Knepley       PetscCall(DMGetNumFields(dm, &Nf));
127701468941SMatthew G. Knepley       PetscCall(PetscCalloc2(Nf, &funcs, Nf, &ctxs));
127801468941SMatthew G. Knepley       funcs[field] = (PetscSimplePointFn *)bvfunc;
127901468941SMatthew G. Knepley       ctxs[field]  = ctx;
128001468941SMatthew G. Knepley       PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_ALL_VALUES, locB));
128101468941SMatthew G. Knepley       PetscCall(PetscFree2(funcs, ctxs));
128201468941SMatthew G. Knepley     }
128301468941SMatthew G. Knepley     PetscCall(DMPlexLabelClearCells(dm, label));
128401468941SMatthew G. Knepley   }
128501468941SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
128601468941SMatthew G. Knepley }
128701468941SMatthew G. Knepley 
1288f1d73a7aSMatthew G. Knepley /*@
1289f1d73a7aSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
1290f1d73a7aSMatthew G. Knepley 
1291ed808b8fSJed Brown   Not Collective
1292ed808b8fSJed Brown 
1293f1d73a7aSMatthew G. Knepley   Input Parameters:
1294a1cb98faSBarry Smith + dm              - The `DM`
1295f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
1296f1d73a7aSMatthew G. Knepley . time            - The time
1297f1d73a7aSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
1298f1d73a7aSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
1299f1d73a7aSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
1300f1d73a7aSMatthew G. Knepley 
13012fe279fdSBarry Smith   Output Parameter:
1302f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values
1303f1d73a7aSMatthew G. Knepley 
1304ed808b8fSJed Brown   Level: intermediate
1305f1d73a7aSMatthew G. Knepley 
13061cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()`
1307f1d73a7aSMatthew G. Knepley @*/
1308d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1309d71ae5a4SJacob Faibussowitsch {
1310f1d73a7aSMatthew G. Knepley   PetscFunctionBegin;
1311f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1312064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
1313ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1314ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1315ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1316cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM));
13173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1318f1d73a7aSMatthew G. Knepley }
1319f1d73a7aSMatthew G. Knepley 
132056cf3b9cSMatthew G. Knepley /*@
1321a5b23f4aSJose E. Roman   DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector
132256cf3b9cSMatthew G. Knepley 
132356cf3b9cSMatthew G. Knepley   Input Parameters:
1324a1cb98faSBarry Smith + dm              - The `DM`
132556cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
132656cf3b9cSMatthew G. Knepley . time            - The time
132756cf3b9cSMatthew G. Knepley . faceGeomFVM     - Face geometry data for FV discretizations
132856cf3b9cSMatthew G. Knepley . cellGeomFVM     - Cell geometry data for FV discretizations
132956cf3b9cSMatthew G. Knepley - gradFVM         - Gradient reconstruction data for FV discretizations
133056cf3b9cSMatthew G. Knepley 
13312fe279fdSBarry Smith   Output Parameter:
133256cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values
133356cf3b9cSMatthew G. Knepley 
133456cf3b9cSMatthew G. Knepley   Level: developer
133556cf3b9cSMatthew G. Knepley 
13361cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`
133756cf3b9cSMatthew G. Knepley @*/
1338d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1339d71ae5a4SJacob Faibussowitsch {
134056cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
134156cf3b9cSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1342ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3);
1343ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1344ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1345ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
13466c51210dSStefano Zampini   PetscTryMethod(dm, "DMPlexInsertTimeDerivativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM));
13473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
134856cf3b9cSMatthew G. Knepley }
134956cf3b9cSMatthew G. Knepley 
135001468941SMatthew G. Knepley /*@
135101468941SMatthew G. Knepley   DMPlexInsertBounds - Puts coefficients which represent solution bounds into the local bounds vector
135201468941SMatthew G. Knepley 
135301468941SMatthew G. Knepley   Not Collective
135401468941SMatthew G. Knepley 
135501468941SMatthew G. Knepley   Input Parameters:
135601468941SMatthew G. Knepley + dm    - The `DM`
135701468941SMatthew G. Knepley . lower - If `PETSC_TRUE` use `DM_BC_LOWER_BOUND` conditions, otherwise use `DM_BC_UPPER_BOUND`
135801468941SMatthew G. Knepley - time  - The time
135901468941SMatthew G. Knepley 
136001468941SMatthew G. Knepley   Output Parameter:
136101468941SMatthew G. Knepley . locB - Bounds vector updated with new bounds
136201468941SMatthew G. Knepley 
136301468941SMatthew G. Knepley   Level: intermediate
136401468941SMatthew G. Knepley 
136501468941SMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `PetscDSAddBoundary()`
136601468941SMatthew G. Knepley @*/
136701468941SMatthew G. Knepley PetscErrorCode DMPlexInsertBounds(DM dm, PetscBool lower, PetscReal time, Vec locB)
136801468941SMatthew G. Knepley {
136901468941SMatthew G. Knepley   PetscFunctionBegin;
137001468941SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
137101468941SMatthew G. Knepley   PetscValidHeaderSpecific(locB, VEC_CLASSID, 4);
137201468941SMatthew G. Knepley   PetscTryMethod(dm, "DMPlexInsertBounds_C", (DM, PetscBool, PetscReal, Vec), (dm, lower, time, locB));
137301468941SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
137401468941SMatthew G. Knepley }
137501468941SMatthew G. Knepley 
13765962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values
13775962854dSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesFVM(DM dm, PetscFV fv, Vec locX, PetscReal time, Vec *locGradient)
13785962854dSMatthew G. Knepley {
13795962854dSMatthew G. Knepley   DM  dmGrad;
13805962854dSMatthew G. Knepley   Vec cellGeometryFVM, faceGeometryFVM, locGrad = NULL;
13815962854dSMatthew G. Knepley 
13825962854dSMatthew G. Knepley   PetscFunctionBegin;
13835962854dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
13845962854dSMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
13855962854dSMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
13865962854dSMatthew G. Knepley   if (locGradient) {
13875962854dSMatthew G. Knepley     PetscAssertPointer(locGradient, 5);
13885962854dSMatthew G. Knepley     *locGradient = NULL;
13895962854dSMatthew G. Knepley   }
13905962854dSMatthew G. Knepley   PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
13915962854dSMatthew G. Knepley   /* Reconstruct and limit cell gradients */
13925962854dSMatthew G. Knepley   PetscCall(DMPlexGetGradientDM(dm, fv, &dmGrad));
13935962854dSMatthew G. Knepley   if (dmGrad) {
13945962854dSMatthew G. Knepley     Vec      grad;
13955962854dSMatthew G. Knepley     PetscInt fStart, fEnd;
13965962854dSMatthew G. Knepley 
13975962854dSMatthew G. Knepley     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
13985962854dSMatthew G. Knepley     PetscCall(DMGetGlobalVector(dmGrad, &grad));
13995962854dSMatthew G. Knepley     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
14005962854dSMatthew G. Knepley     /* Communicate gradient values */
14015962854dSMatthew G. Knepley     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
14025962854dSMatthew G. Knepley     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
14035962854dSMatthew G. Knepley     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
14045962854dSMatthew G. Knepley     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
14055962854dSMatthew G. Knepley   }
14065962854dSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad));
14075962854dSMatthew G. Knepley   if (locGradient) *locGradient = locGrad;
14085962854dSMatthew G. Knepley   else if (locGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
14095962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
14105962854dSMatthew G. Knepley }
14115962854dSMatthew G. Knepley 
1412d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1413d71ae5a4SJacob Faibussowitsch {
1414574a98acSMatthew G. Knepley   Vec localX;
1415574a98acSMatthew G. Knepley 
1416574a98acSMatthew G. Knepley   PetscFunctionBegin;
14179566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
14189566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL));
14199566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
14209566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
14219566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff));
14229566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
14233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1424574a98acSMatthew G. Knepley }
1425574a98acSMatthew G. Knepley 
1426574a98acSMatthew G. Knepley /*@C
142760225df5SJacob Faibussowitsch   DMPlexComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
1428574a98acSMatthew G. Knepley 
142920f4b53cSBarry Smith   Collective
1430c0f8e1fdSMatthew G. Knepley 
1431574a98acSMatthew G. Knepley   Input Parameters:
1432a1cb98faSBarry Smith + dm     - The `DM`
1433574a98acSMatthew G. Knepley . time   - The time
1434574a98acSMatthew G. Knepley . funcs  - The functions to evaluate for each field component
143520f4b53cSBarry Smith . ctxs   - Optional array of contexts to pass to each function, or `NULL`.
1436574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector
1437574a98acSMatthew G. Knepley 
1438574a98acSMatthew G. Knepley   Output Parameter:
1439574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2
1440574a98acSMatthew G. Knepley 
1441574a98acSMatthew G. Knepley   Level: developer
1442574a98acSMatthew G. Knepley 
14431cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1444574a98acSMatthew G. Knepley @*/
1445d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff)
1446d71ae5a4SJacob Faibussowitsch {
14470f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1448ca3d3a14SMatthew G. Knepley   DM               tdm;
1449ca3d3a14SMatthew G. Knepley   Vec              tv;
1450cb1e1211SMatthew G Knepley   PetscSection     section;
1451c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
14524bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
145315496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
14544bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
1455cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
14567318780aSToby Isaac   const PetscReal *quadWeights;
1457412e9a14SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset;
1458ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1459cb1e1211SMatthew G Knepley 
1460cb1e1211SMatthew G Knepley   PetscFunctionBegin;
14619566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
14629566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
14632a4e142eSMatthew G. Knepley   fegeom.dimEmbed = coordDim;
14649566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
14659566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
14669566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
14679566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
14689566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1469eae3dc7dSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
1470cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
147115496722SMatthew G. Knepley     PetscObject  obj;
147215496722SMatthew G. Knepley     PetscClassId id;
1473c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
1474c5bbbd5bSMatthew G. Knepley 
14759566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
14769566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
147715496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
147815496722SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
147915496722SMatthew G. Knepley 
14809566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
14819566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
148215496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
148315496722SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
148415496722SMatthew G. Knepley 
14859566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
14869566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
148763a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1488c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
1489cb1e1211SMatthew G Knepley   }
14909566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
149163a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
1492c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
14939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
14949566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
1495cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
1496a1e44745SMatthew G. Knepley     PetscScalar *x        = NULL;
1497cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
14989c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1499cb1e1211SMatthew G Knepley 
15009566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1501e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
1502cb1e1211SMatthew G Knepley 
150315496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
150415496722SMatthew G. Knepley       PetscObject  obj;
150515496722SMatthew G. Knepley       PetscClassId id;
1506c110b1eeSGeoffrey Irving       void *const  ctx = ctxs ? ctxs[field] : NULL;
150715496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1508cb1e1211SMatthew G Knepley 
15099566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
15109566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
15119371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
15129371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
15139371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
15149371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
15159371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
15169371c9d4SSatish Balay         Nb = 1;
15179371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1518cb1e1211SMatthew G Knepley       if (debug) {
1519cb1e1211SMatthew G Knepley         char title[1024];
152063a3b9bcSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
15219566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1522cb1e1211SMatthew G Knepley       }
15237318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
15242a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1525d0609cedSBarry Smith         PetscErrorCode ierr;
15262a4e142eSMatthew G. Knepley 
15272a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
15282a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
15292a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
15302a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
153163a3b9bcSJacob Faibussowitsch         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1532d3a7d86cSMatthew G. Knepley         if (transform) {
1533d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
15349566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1535d3a7d86cSMatthew G. Knepley         } else {
1536d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1537d3a7d86cSMatthew G. Knepley         }
15389566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
1539ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx);
1540e735a8a9SMatthew G. Knepley         if (ierr) {
15419566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
15429566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
15439566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1544e735a8a9SMatthew G. Knepley         }
15459566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
15469566063dSJacob Faibussowitsch         if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
15479566063dSJacob Faibussowitsch         else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
15482df84da0SMatthew G. Knepley         else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
154915496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1550beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
15519371c9d4SSatish Balay           if (debug)
1552835f2295SStefano Zampini             PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0),
15539371c9d4SSatish Balay                                   (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc])));
15544bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1555cb1e1211SMatthew G Knepley         }
1556cb1e1211SMatthew G Knepley       }
15579c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
1558beaa55a6SMatthew G. Knepley       qc += Nc;
1559cb1e1211SMatthew G Knepley     }
15609566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
15619566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
1562cb1e1211SMatthew G Knepley     localDiff += elemDiff;
1563cb1e1211SMatthew G Knepley   }
15649566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1565462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
1566cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
15673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1568cb1e1211SMatthew G Knepley }
1569cb1e1211SMatthew G Knepley 
1570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
1571d71ae5a4SJacob Faibussowitsch {
15720f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1573ca3d3a14SMatthew G. Knepley   DM               tdm;
1574cb1e1211SMatthew G Knepley   PetscSection     section;
157540e14135SMatthew G. Knepley   PetscQuadrature  quad;
1576ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
15779c3cf19fSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
15782a4e142eSMatthew G. Knepley   const PetscReal *quadWeights;
15794bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
15804bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
158140e14135SMatthew G. Knepley   PetscReal        localDiff = 0.0;
1582485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset;
1583ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1584cb1e1211SMatthew G Knepley 
1585cb1e1211SMatthew G Knepley   PetscFunctionBegin;
15869566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
15879566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
15884bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
15899566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
15909566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
15919566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
15929566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
15939566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
15949566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
15959566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
15969566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1597652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
15980f2d7e86SMatthew G. Knepley     PetscFE  fe;
159940e14135SMatthew G. Knepley     PetscInt Nc;
1600652b88e8SMatthew G. Knepley 
16019566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
16029566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
16039566063dSJacob Faibussowitsch     PetscCall(PetscFEGetNumComponents(fe, &Nc));
160440e14135SMatthew G. Knepley     numComponents += Nc;
1605652b88e8SMatthew G. Knepley   }
16069566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
160763a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
16089566063dSJacob Faibussowitsch   /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */
1609c9cb6370SYANG Zongze   PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ));
16109566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
161140e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
161240e14135SMatthew G. Knepley     PetscScalar *x        = NULL;
161340e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
16149c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1615652b88e8SMatthew G. Knepley 
16169566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1617e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
161840e14135SMatthew G. Knepley 
16199c3cf19fSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
16200f2d7e86SMatthew G. Knepley       PetscFE     fe;
162151259fa3SMatthew G. Knepley       void *const ctx = ctxs ? ctxs[field] : NULL;
16229c3cf19fSMatthew G. Knepley       PetscInt    Nb, Nc, q, fc;
162340e14135SMatthew G. Knepley 
16249566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
16259566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
16269566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
162740e14135SMatthew G. Knepley       if (debug) {
162840e14135SMatthew G. Knepley         char title[1024];
16299566063dSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
16309566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1631652b88e8SMatthew G. Knepley       }
16329c3cf19fSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
16332a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1634d0609cedSBarry Smith         PetscErrorCode ierr;
16352a4e142eSMatthew G. Knepley 
16362a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
16372a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
16382a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
16392a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
16402df84da0SMatthew G. Knepley         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1641d3a7d86cSMatthew G. Knepley         if (transform) {
1642d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
16439566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1644d3a7d86cSMatthew G. Knepley         } else {
1645d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1646d3a7d86cSMatthew G. Knepley         }
16479566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
16484bee2e38SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx);
1649e735a8a9SMatthew G. Knepley         if (ierr) {
16509566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
16519566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
16529566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
1653e735a8a9SMatthew G. Knepley         }
16549566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
16559566063dSJacob Faibussowitsch         PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant));
16564bee2e38SMatthew G. Knepley         /* Overwrite with the dot product if the normal is given */
16574bee2e38SMatthew G. Knepley         if (n) {
16584bee2e38SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
16594bee2e38SMatthew G. Knepley             PetscScalar sum = 0.0;
16604bee2e38SMatthew G. Knepley             PetscInt    d;
16614bee2e38SMatthew G. Knepley             for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d];
16624bee2e38SMatthew G. Knepley             interpolant[fc] = sum;
16634bee2e38SMatthew G. Knepley           }
16644bee2e38SMatthew G. Knepley         }
16659c3cf19fSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1666beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
166763a3b9bcSJacob Faibussowitsch           if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
16684bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
166940e14135SMatthew G. Knepley         }
167040e14135SMatthew G. Knepley       }
16719c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
16729c3cf19fSMatthew G. Knepley       qc += Nc;
167340e14135SMatthew G. Knepley     }
16749566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
167563a3b9bcSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
167640e14135SMatthew G. Knepley     localDiff += elemDiff;
167740e14135SMatthew G. Knepley   }
16789566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
16799566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
1680462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
168140e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
16823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1683cb1e1211SMatthew G Knepley }
1684cb1e1211SMatthew G Knepley 
1685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1686d71ae5a4SJacob Faibussowitsch {
16870f09c10fSMatthew G. Knepley   const PetscInt debug = ((DM_Plex *)dm->data)->printL2;
1688ca3d3a14SMatthew G. Knepley   DM             tdm;
1689083401c6SMatthew G. Knepley   DMLabel        depthLabel;
169073d901b8SMatthew G. Knepley   PetscSection   section;
1691ca3d3a14SMatthew G. Knepley   Vec            localX, tv;
169273d901b8SMatthew G. Knepley   PetscReal     *localDiff;
1693083401c6SMatthew G. Knepley   PetscInt       dim, depth, dE, Nf, f, Nds, s;
1694ca3d3a14SMatthew G. Knepley   PetscBool      transform;
169573d901b8SMatthew G. Knepley 
169673d901b8SMatthew G. Knepley   PetscFunctionBegin;
16979566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16989566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
16999566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
17009566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
17019566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
17029566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
17039566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
17049566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
17059566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
17069566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(depthLabel, &depth));
1707083401c6SMatthew G. Knepley 
17089566063dSJacob Faibussowitsch   PetscCall(VecSet(localX, 0.0));
17099566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
17109566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
17119566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
17129566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
17139566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nf, &localDiff));
1714083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
1715083401c6SMatthew G. Knepley     PetscDS          ds;
1716083401c6SMatthew G. Knepley     DMLabel          label;
1717083401c6SMatthew G. Knepley     IS               fieldIS, pointIS;
1718083401c6SMatthew G. Knepley     const PetscInt  *fields, *points = NULL;
1719083401c6SMatthew G. Knepley     PetscQuadrature  quad;
1720083401c6SMatthew G. Knepley     const PetscReal *quadPoints, *quadWeights;
1721083401c6SMatthew G. Knepley     PetscFEGeom      fegeom;
1722083401c6SMatthew G. Knepley     PetscReal       *coords, *gcoords;
1723083401c6SMatthew G. Knepley     PetscScalar     *funcVal, *interpolant;
17245fedec97SMatthew G. Knepley     PetscBool        isCohesive;
1725083401c6SMatthew G. Knepley     PetscInt         qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf;
172673d901b8SMatthew G. Knepley 
172707218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
17289566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
17299566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
17309566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
17319566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalComponents(ds, &totNc));
17329566063dSJacob Faibussowitsch     PetscCall(PetscDSGetQuadrature(ds, &quad));
17339566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
173463a3b9bcSJacob Faibussowitsch     PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc);
17359566063dSJacob Faibussowitsch     PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ));
1736083401c6SMatthew G. Knepley     if (!label) {
17379566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1738083401c6SMatthew G. Knepley     } else {
17399566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
17409566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &cEnd));
17419566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
1742083401c6SMatthew G. Knepley     }
174373d901b8SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
1744083401c6SMatthew G. Knepley       const PetscInt  cell = points ? points[c] : c;
174573d901b8SMatthew G. Knepley       PetscScalar    *x    = NULL;
17465fedec97SMatthew G. Knepley       const PetscInt *cone;
17475fedec97SMatthew G. Knepley       PetscInt        qc = 0, fOff = 0, dep;
174873d901b8SMatthew G. Knepley 
17499566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(depthLabel, cell, &dep));
1750083401c6SMatthew G. Knepley       if (dep != depth - 1) continue;
17515fedec97SMatthew G. Knepley       if (isCohesive) {
17529566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cell, &cone));
17539566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
175496959cd1SMatthew G. Knepley       } else {
17559566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
175696959cd1SMatthew G. Knepley       }
1757e8e188d2SZach Atkins       PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, cell, 0, NULL, &x));
17585fedec97SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
175915496722SMatthew G. Knepley         PetscObject  obj;
176015496722SMatthew G. Knepley         PetscClassId id;
1761083401c6SMatthew G. Knepley         void *const  ctx = ctxs ? ctxs[fields[f]] : NULL;
176215496722SMatthew G. Knepley         PetscInt     Nb, Nc, q, fc;
176315496722SMatthew G. Knepley         PetscReal    elemDiff = 0.0;
17645fedec97SMatthew G. Knepley         PetscBool    cohesive;
176515496722SMatthew G. Knepley 
17669566063dSJacob Faibussowitsch         PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
17679566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
17689566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
17699371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
17709371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
17719371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
17729371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
17739371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
17749371c9d4SSatish Balay           Nb = 1;
17759371c9d4SSatish Balay         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
1776c82db6dbSMatthew G. Knepley         if (isCohesive && !cohesive) {
1777c82db6dbSMatthew G. Knepley           fOff += Nb * 2;
1778c82db6dbSMatthew G. Knepley           qc += Nc;
1779c82db6dbSMatthew G. Knepley           continue;
1780c82db6dbSMatthew G. Knepley         }
178173d901b8SMatthew G. Knepley         if (debug) {
178273d901b8SMatthew G. Knepley           char title[1024];
178363a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f]));
17849566063dSJacob Faibussowitsch           PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff]));
178573d901b8SMatthew G. Knepley         }
17867318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
17872a4e142eSMatthew G. Knepley           PetscFEGeom    qgeom;
1788d0609cedSBarry Smith           PetscErrorCode ierr;
17892a4e142eSMatthew G. Knepley 
17902a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
1791083401c6SMatthew G. Knepley           qgeom.J        = &fegeom.J[q * dE * dE];
1792083401c6SMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * dE * dE];
17932a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
179463a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
1795d3a7d86cSMatthew G. Knepley           if (transform) {
1796083401c6SMatthew G. Knepley             gcoords = &coords[dE * Nq];
17979566063dSJacob Faibussowitsch             PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx));
1798d3a7d86cSMatthew G. Knepley           } else {
1799083401c6SMatthew G. Knepley             gcoords = &coords[dE * q];
1800d3a7d86cSMatthew G. Knepley           }
18012df84da0SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.;
1802083401c6SMatthew G. Knepley           ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx);
1803e735a8a9SMatthew G. Knepley           if (ierr) {
18049566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
18059566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
18069566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1807e735a8a9SMatthew G. Knepley           }
18089566063dSJacob Faibussowitsch           if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
180996959cd1SMatthew G. Knepley           /* Call once for each face, except for lagrange field */
18109566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant));
18119566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant));
181263a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
181315496722SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1814beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
18159371c9d4SSatish Balay             if (debug)
1816835f2295SStefano Zampini               PetscCall(PetscPrintf(PETSC_COMM_SELF, "    cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0), (double)(dE > 1 ? coords[dE * q + 1] : 0), (double)(dE > 2 ? coords[dE * q + 2] : 0),
18179371c9d4SSatish Balay                                     (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
18184bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
181973d901b8SMatthew G. Knepley           }
182073d901b8SMatthew G. Knepley         }
1821083401c6SMatthew G. Knepley         fOff += Nb;
18229c3cf19fSMatthew G. Knepley         qc += Nc;
1823083401c6SMatthew G. Knepley         localDiff[fields[f]] += elemDiff;
182463a3b9bcSJacob Faibussowitsch         if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]]));
182573d901b8SMatthew G. Knepley       }
18269566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
1827083401c6SMatthew G. Knepley     }
1828083401c6SMatthew G. Knepley     if (label) {
18299566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
18309566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
1831083401c6SMatthew G. Knepley     }
18329566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
18339566063dSJacob Faibussowitsch     PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
183473d901b8SMatthew G. Knepley   }
18359566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
1836e91c04dfSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
18379566063dSJacob Faibussowitsch   PetscCall(PetscFree(localDiff));
1838083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]);
18393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
184073d901b8SMatthew G. Knepley }
184173d901b8SMatthew G. Knepley 
1842e729f68cSMatthew G. Knepley /*@C
1843e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
1844e729f68cSMatthew G. Knepley 
184520f4b53cSBarry Smith   Collective
1846c0f8e1fdSMatthew G. Knepley 
1847e729f68cSMatthew G. Knepley   Input Parameters:
1848a1cb98faSBarry Smith + dm    - The `DM`
18490163fd50SMatthew G. Knepley . time  - The time
185020f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation
185120f4b53cSBarry Smith . ctxs  - Optional array of contexts to pass to each function, or `NULL`.
1852e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
1853e729f68cSMatthew G. Knepley 
1854e729f68cSMatthew G. Knepley   Output Parameter:
185520f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell
1856e729f68cSMatthew G. Knepley 
1857e729f68cSMatthew G. Knepley   Level: developer
1858e729f68cSMatthew G. Knepley 
18591cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1860e729f68cSMatthew G. Knepley @*/
1861d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
1862d71ae5a4SJacob Faibussowitsch {
1863e729f68cSMatthew G. Knepley   PetscSection     section;
1864e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
1865e729f68cSMatthew G. Knepley   Vec              localX;
18664bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
1867e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
18684bee2e38SMatthew G. Knepley   PetscReal       *coords;
1869e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1870485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset;
1871e729f68cSMatthew G. Knepley 
1872e729f68cSMatthew G. Knepley   PetscFunctionBegin;
18739566063dSJacob Faibussowitsch   PetscCall(VecSet(D, 0.0));
18749566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
18759566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
18769566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
18779566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
18789566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
18799566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
18809566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
18819566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
1882e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
1883e729f68cSMatthew G. Knepley     PetscObject  obj;
1884e729f68cSMatthew G. Knepley     PetscClassId id;
1885e729f68cSMatthew G. Knepley     PetscInt     Nc;
1886e729f68cSMatthew G. Knepley 
18879566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
18889566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1889e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1890e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
1891e729f68cSMatthew G. Knepley 
18929566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
18939566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
1894e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1895e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
1896e729f68cSMatthew G. Knepley 
18979566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
18989566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
189963a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1900e729f68cSMatthew G. Knepley     numComponents += Nc;
1901e729f68cSMatthew G. Knepley   }
19029566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
190363a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
19049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
19059566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1906e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1907e729f68cSMatthew G. Knepley     PetscScalar *x        = NULL;
19086f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
19099c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1910e729f68cSMatthew G. Knepley 
19119566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
1912e8e188d2SZach Atkins     PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x));
1913e729f68cSMatthew G. Knepley 
1914e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
1915e729f68cSMatthew G. Knepley       PetscObject  obj;
1916e729f68cSMatthew G. Knepley       PetscClassId id;
1917e729f68cSMatthew G. Knepley       void *const  ctx = ctxs ? ctxs[field] : NULL;
1918e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1919e729f68cSMatthew G. Knepley 
19209566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
19219566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
19229371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
19239371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
19249371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
19259371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
19269371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
19279371c9d4SSatish Balay         Nb = 1;
19289371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
192923f34ed2SToby Isaac       if (funcs[field]) {
19307318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
19312a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
19322a4e142eSMatthew G. Knepley 
19332a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
19342a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
19352a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
19362a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
193763a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
19389566063dSJacob Faibussowitsch           PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx));
1939c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument)
1940e735a8a9SMatthew G. Knepley           if (ierr) {
19419566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
19429566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
19439566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
1944e735a8a9SMatthew G. Knepley           }
1945c3e24edfSBarry Smith #endif
19469566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
19479566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
194863a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1949e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1950beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
19514bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1952e729f68cSMatthew G. Knepley           }
1953e729f68cSMatthew G. Knepley         }
195423f34ed2SToby Isaac       }
1955beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
19569c3cf19fSMatthew G. Knepley       qc += Nc;
1957e729f68cSMatthew G. Knepley     }
19589566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
19599566063dSJacob Faibussowitsch     PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES));
1960e729f68cSMatthew G. Knepley   }
19619566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
19629566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
19639566063dSJacob Faibussowitsch   PetscCall(VecSqrtAbs(D));
19643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1965e729f68cSMatthew G. Knepley }
1966e729f68cSMatthew G. Knepley 
19675f0b18bfSMatthew G. Knepley /*@
19682353bfffSMatthew G. Knepley   DMPlexComputeL2FluxDiffVecLocal - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu`
19692353bfffSMatthew G. Knepley 
19702353bfffSMatthew G. Knepley   Collective
19712353bfffSMatthew G. Knepley 
19722353bfffSMatthew G. Knepley   Input Parameters:
19732353bfffSMatthew G. Knepley + lu  - The local `Vec` containing the primal solution
19742353bfffSMatthew G. Knepley . f   - The field number for the potential
19752353bfffSMatthew G. Knepley . lmu - The local `Vec` containing the mixed solution
19762353bfffSMatthew G. Knepley - mf  - The field number for the flux
19772353bfffSMatthew G. Knepley 
19782353bfffSMatthew G. Knepley   Output Parameter:
19792353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$
19802353bfffSMatthew G. Knepley 
19812353bfffSMatthew G. Knepley   Level: advanced
19822353bfffSMatthew G. Knepley 
19832353bfffSMatthew G. Knepley   Notes:
19842353bfffSMatthew G. Knepley   We assume that the `DM` for each solution has the same topology, geometry, and quadrature.
19852353bfffSMatthew G. Knepley 
19862353bfffSMatthew G. Knepley   This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution.
19872353bfffSMatthew G. Knepley 
19882353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVec()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
19892353bfffSMatthew G. Knepley @*/
19902353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVecLocal(Vec lu, PetscInt f, Vec lmu, PetscInt mf, Vec eFlux)
19912353bfffSMatthew G. Knepley {
19922353bfffSMatthew G. Knepley   DM               dm, mdm, edm;
19932353bfffSMatthew G. Knepley   PetscFE          fe, mfe;
19942353bfffSMatthew G. Knepley   PetscFEGeom      fegeom;
19952353bfffSMatthew G. Knepley   PetscQuadrature  quad;
19962353bfffSMatthew G. Knepley   const PetscReal *quadWeights;
19972353bfffSMatthew G. Knepley   PetscReal       *coords;
19982353bfffSMatthew G. Knepley   PetscScalar     *interpolant, *minterpolant, *earray;
19992353bfffSMatthew G. Knepley   PetscInt         cdim, mcdim, cStart, cEnd, Nc, mNc, qNc, Nq;
20002353bfffSMatthew G. Knepley   MPI_Comm         comm;
20012353bfffSMatthew G. Knepley 
20022353bfffSMatthew G. Knepley   PetscFunctionBegin;
20032353bfffSMatthew G. Knepley   PetscCall(VecGetDM(lu, &dm));
20042353bfffSMatthew G. Knepley   PetscCall(VecGetDM(lmu, &mdm));
20052353bfffSMatthew G. Knepley   PetscCall(VecGetDM(eFlux, &edm));
20062353bfffSMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
20072353bfffSMatthew G. Knepley   PetscCall(VecSet(eFlux, 0.0));
20082353bfffSMatthew G. Knepley 
20092353bfffSMatthew G. Knepley   // Check if the both problems are on the same mesh
20102353bfffSMatthew G. Knepley   PetscCall(DMGetCoordinateDim(dm, &cdim));
20112353bfffSMatthew G. Knepley   PetscCall(DMGetCoordinateDim(mdm, &mcdim));
20122353bfffSMatthew G. Knepley   PetscCheck(cdim == mcdim, comm, PETSC_ERR_ARG_SIZ, "primal coordinate Dim %" PetscInt_FMT " != %" PetscInt_FMT " mixed coordinate Dim", cdim, mcdim);
20132353bfffSMatthew G. Knepley   fegeom.dimEmbed = cdim;
20142353bfffSMatthew G. Knepley 
20152353bfffSMatthew G. Knepley   PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
20162353bfffSMatthew G. Knepley   PetscCall(DMGetField(mdm, mf, NULL, (PetscObject *)&mfe));
20172353bfffSMatthew G. Knepley   PetscCall(PetscFEGetNumComponents(fe, &Nc));
20182353bfffSMatthew G. Knepley   PetscCall(PetscFEGetNumComponents(mfe, &mNc));
20192353bfffSMatthew G. Knepley   PetscCall(PetscFEGetQuadrature(fe, &quad));
20202353bfffSMatthew G. Knepley   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
20212353bfffSMatthew G. Knepley   PetscCheck(qNc == 1 || qNc == mNc, comm, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, mNc);
20222353bfffSMatthew G. Knepley 
20232353bfffSMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
20242353bfffSMatthew G. Knepley   PetscCall(VecGetArrayWrite(eFlux, &earray));
20252353bfffSMatthew G. Knepley   PetscCall(PetscMalloc6(Nc * cdim, &interpolant, mNc * cdim, &minterpolant, cdim * (Nq + 1), &coords, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ, Nq, &fegeom.detJ));
20262353bfffSMatthew G. Knepley   for (PetscInt c = cStart; c < cEnd; ++c) {
20272353bfffSMatthew G. Knepley     PetscScalar *x            = NULL;
20282353bfffSMatthew G. Knepley     PetscScalar *mx           = NULL;
20292353bfffSMatthew G. Knepley     PetscScalar *eval         = NULL;
20302353bfffSMatthew G. Knepley     PetscReal    fluxElemDiff = 0.0;
20312353bfffSMatthew G. Knepley 
20322353bfffSMatthew G. Knepley     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
20332353bfffSMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(dm, NULL, lu, c, NULL, &x));
20342353bfffSMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(mdm, NULL, lmu, c, NULL, &mx));
20352353bfffSMatthew G. Knepley 
20362353bfffSMatthew G. Knepley     for (PetscInt q = 0; q < Nq; ++q) {
20372353bfffSMatthew G. Knepley       PetscFEGeom qgeom;
20382353bfffSMatthew G. Knepley 
20392353bfffSMatthew G. Knepley       qgeom.dimEmbed = fegeom.dimEmbed;
20402353bfffSMatthew G. Knepley       qgeom.J        = &fegeom.J[q * cdim * cdim];
20412353bfffSMatthew G. Knepley       qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
20422353bfffSMatthew G. Knepley       qgeom.detJ     = &fegeom.detJ[q];
20432353bfffSMatthew G. Knepley 
20442353bfffSMatthew G. Knepley       PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
20452353bfffSMatthew G. Knepley 
20462353bfffSMatthew G. Knepley       PetscCall(PetscFEInterpolate_Static(mfe, &mx[0], &qgeom, q, minterpolant));
20472353bfffSMatthew G. Knepley       PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[0], &qgeom, q, interpolant));
20482353bfffSMatthew G. Knepley 
20492353bfffSMatthew G. Knepley       /* Now take the elementwise difference and store that in a vector. */
20502353bfffSMatthew G. Knepley       for (PetscInt fc = 0; fc < mNc; ++fc) {
20512353bfffSMatthew G. Knepley         const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : fc)];
20522353bfffSMatthew G. Knepley         fluxElemDiff += PetscSqr(PetscRealPart(interpolant[fc] - minterpolant[fc])) * wt * fegeom.detJ[q];
20532353bfffSMatthew G. Knepley       }
20542353bfffSMatthew G. Knepley     }
20552353bfffSMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(dm, NULL, lu, c, NULL, &x));
20562353bfffSMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(mdm, NULL, lmu, c, NULL, &mx));
20572353bfffSMatthew G. Knepley     PetscCall(DMPlexPointGlobalRef(edm, c, earray, (void *)&eval));
20582353bfffSMatthew G. Knepley     if (eval) eval[0] = fluxElemDiff;
20592353bfffSMatthew G. Knepley   }
20602353bfffSMatthew G. Knepley   PetscCall(PetscFree6(interpolant, minterpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
20612353bfffSMatthew G. Knepley   PetscCall(VecRestoreArrayWrite(eFlux, &earray));
20622353bfffSMatthew G. Knepley 
20632353bfffSMatthew G. Knepley   PetscCall(VecAssemblyBegin(eFlux));
20642353bfffSMatthew G. Knepley   PetscCall(VecAssemblyEnd(eFlux));
20652353bfffSMatthew G. Knepley   PetscCall(VecSqrtAbs(eFlux));
20662353bfffSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
20672353bfffSMatthew G. Knepley }
20682353bfffSMatthew G. Knepley 
20692353bfffSMatthew G. Knepley /*@
20702353bfffSMatthew G. Knepley   DMPlexComputeL2FluxDiffVec - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu`
20712353bfffSMatthew G. Knepley 
20722353bfffSMatthew G. Knepley   Collective
20732353bfffSMatthew G. Knepley 
20742353bfffSMatthew G. Knepley   Input Parameters:
20752353bfffSMatthew G. Knepley + u  - The global `Vec` containing the primal solution
20762353bfffSMatthew G. Knepley . f  - The field number for the potential
20772353bfffSMatthew G. Knepley . mu - The global `Vec` containing the mixed solution
20782353bfffSMatthew G. Knepley - mf - The field number for the flux
20792353bfffSMatthew G. Knepley 
20802353bfffSMatthew G. Knepley   Output Parameter:
20812353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$
20822353bfffSMatthew G. Knepley 
20832353bfffSMatthew G. Knepley   Level: advanced
20842353bfffSMatthew G. Knepley 
20852353bfffSMatthew G. Knepley   Notes:
20862353bfffSMatthew G. Knepley   We assume that the `DM` for each solution has the same topology, geometry, and quadrature.
20872353bfffSMatthew G. Knepley 
20882353bfffSMatthew G. Knepley   This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution.
20892353bfffSMatthew G. Knepley 
20902353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVecLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
20912353bfffSMatthew G. Knepley @*/
20922353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVec(Vec u, PetscInt f, Vec mu, PetscInt mf, Vec eFlux)
20932353bfffSMatthew G. Knepley {
20942353bfffSMatthew G. Knepley   DM  dm, mdm;
20952353bfffSMatthew G. Knepley   Vec lu, lmu;
20962353bfffSMatthew G. Knepley 
20972353bfffSMatthew G. Knepley   PetscFunctionBegin;
20982353bfffSMatthew G. Knepley   PetscCall(VecGetDM(u, &dm));
20992353bfffSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &lu));
21002353bfffSMatthew G. Knepley   PetscCall(DMGlobalToLocal(dm, u, INSERT_VALUES, lu));
21012353bfffSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, lu, 0.0, NULL, NULL, NULL));
21022353bfffSMatthew G. Knepley 
21032353bfffSMatthew G. Knepley   PetscCall(VecGetDM(mu, &mdm));
21042353bfffSMatthew G. Knepley   PetscCall(DMGetLocalVector(mdm, &lmu));
21052353bfffSMatthew G. Knepley   PetscCall(DMGlobalToLocal(mdm, mu, INSERT_VALUES, lmu));
21062353bfffSMatthew G. Knepley   PetscCall(DMPlexInsertBoundaryValues(mdm, PETSC_TRUE, lmu, 0.0, NULL, NULL, NULL));
21072353bfffSMatthew G. Knepley 
21082353bfffSMatthew G. Knepley   PetscCall(DMPlexComputeL2FluxDiffVecLocal(lu, f, lmu, mf, eFlux));
21092353bfffSMatthew G. Knepley 
21102353bfffSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &lu));
21112353bfffSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(mdm, &lmu));
21122353bfffSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
21132353bfffSMatthew G. Knepley }
21142353bfffSMatthew G. Knepley 
21152353bfffSMatthew G. Knepley /*@
211620f4b53cSBarry Smith   DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1
21175f0b18bfSMatthew G. Knepley 
211820f4b53cSBarry Smith   Collective
21195f0b18bfSMatthew G. Knepley 
21205f0b18bfSMatthew G. Knepley   Input Parameters:
2121a1cb98faSBarry Smith + dm   - The `DM`
21225f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
21235f0b18bfSMatthew G. Knepley 
21245f0b18bfSMatthew G. Knepley   Output Parameter:
2125a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function
21265f0b18bfSMatthew G. Knepley 
21275f0b18bfSMatthew G. Knepley   Level: developer
21285f0b18bfSMatthew G. Knepley 
2129a1cb98faSBarry Smith   Note:
2130a1cb98faSBarry Smith   $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
2131a1cb98faSBarry Smith 
21321cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
21335f0b18bfSMatthew G. Knepley @*/
2134d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC)
2135d71ae5a4SJacob Faibussowitsch {
21365f0b18bfSMatthew G. Knepley   PetscInt         debug = ((DM_Plex *)dm->data)->printFEM;
21375f0b18bfSMatthew G. Knepley   DM               dmc;
21385f0b18bfSMatthew G. Knepley   PetscQuadrature  quad;
21395f0b18bfSMatthew G. Knepley   PetscScalar     *interpolant, *valsum;
21405f0b18bfSMatthew G. Knepley   PetscFEGeom      fegeom;
21415f0b18bfSMatthew G. Knepley   PetscReal       *coords;
21425f0b18bfSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
21435f0b18bfSMatthew G. Knepley   PetscInt         dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v;
21445f0b18bfSMatthew G. Knepley 
21455f0b18bfSMatthew G. Knepley   PetscFunctionBegin;
21469566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
21479566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmc));
21489566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
21499566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
21509566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
21515f0b18bfSMatthew G. Knepley   fegeom.dimEmbed = cdim;
21529566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
21535f0b18bfSMatthew G. Knepley   PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
21545f0b18bfSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
21555f0b18bfSMatthew G. Knepley     PetscObject  obj;
21565f0b18bfSMatthew G. Knepley     PetscClassId id;
21575f0b18bfSMatthew G. Knepley     PetscInt     fNc;
21585f0b18bfSMatthew G. Knepley 
21599566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, NULL, &obj));
21609566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
21615f0b18bfSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
21625f0b18bfSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
21635f0b18bfSMatthew G. Knepley 
21649566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
21659566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &fNc));
21665f0b18bfSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
21675f0b18bfSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
21685f0b18bfSMatthew G. Knepley 
21699566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
21709566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &fNc));
217163a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
21725f0b18bfSMatthew G. Knepley     Nc += fNc;
21735f0b18bfSMatthew G. Knepley   }
21749566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
217563a3b9bcSJacob Faibussowitsch   PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc);
21769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ));
21779566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
21789566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
21795f0b18bfSMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
21805f0b18bfSMatthew G. Knepley     PetscScalar volsum = 0.0;
21815f0b18bfSMatthew G. Knepley     PetscInt   *star   = NULL;
21825f0b18bfSMatthew G. Knepley     PetscInt    starSize, st, fc;
21835f0b18bfSMatthew G. Knepley 
21849566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(valsum, Nc));
21859566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
21865f0b18bfSMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
21875f0b18bfSMatthew G. Knepley       const PetscInt cell = star[st];
21885f0b18bfSMatthew G. Knepley       PetscScalar   *val  = &valsum[Nc];
21895f0b18bfSMatthew G. Knepley       PetscScalar   *x    = NULL;
21905f0b18bfSMatthew G. Knepley       PetscReal      vol  = 0.0;
21915f0b18bfSMatthew G. Knepley       PetscInt       foff = 0;
21925f0b18bfSMatthew G. Knepley 
21935f0b18bfSMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
21949566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
21959566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
21965f0b18bfSMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
21975f0b18bfSMatthew G. Knepley         PetscObject  obj;
21985f0b18bfSMatthew G. Knepley         PetscClassId id;
21995f0b18bfSMatthew G. Knepley         PetscInt     Nb, fNc, q;
22005f0b18bfSMatthew G. Knepley 
22019566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(val, Nc));
22029566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, f, NULL, &obj));
22039566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
22049371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
22059371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc));
22069371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
22079371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
22089371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc));
22099371c9d4SSatish Balay           Nb = 1;
22109371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
22115f0b18bfSMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
22125f0b18bfSMatthew G. Knepley           const PetscReal wt = quadWeights[q] * fegeom.detJ[q];
22135f0b18bfSMatthew G. Knepley           PetscFEGeom     qgeom;
22145f0b18bfSMatthew G. Knepley 
22155f0b18bfSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
22165f0b18bfSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * cdim * cdim];
22175f0b18bfSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
22185f0b18bfSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
221963a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
22209566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant));
222163a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
22225f0b18bfSMatthew G. Knepley           for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt;
22235f0b18bfSMatthew G. Knepley           vol += wt;
22245f0b18bfSMatthew G. Knepley         }
22255f0b18bfSMatthew G. Knepley         foff += Nb;
22265f0b18bfSMatthew G. Knepley       }
22279566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
22285f0b18bfSMatthew G. Knepley       for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc];
22295f0b18bfSMatthew G. Knepley       volsum += vol;
22305f0b18bfSMatthew G. Knepley       if (debug) {
22319566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell));
22325f0b18bfSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
22339566063dSJacob Faibussowitsch           if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
22349566063dSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc])));
22355f0b18bfSMatthew G. Knepley         }
22369566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
22375f0b18bfSMatthew G. Knepley       }
22385f0b18bfSMatthew G. Knepley     }
22395f0b18bfSMatthew G. Knepley     for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum;
22409566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
22419566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES));
22425f0b18bfSMatthew G. Knepley   }
22439566063dSJacob Faibussowitsch   PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
22443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22455f0b18bfSMatthew G. Knepley }
22465f0b18bfSMatthew G. Knepley 
22475f0b18bfSMatthew G. Knepley /*@
224820f4b53cSBarry Smith   DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1
22491555c271SMatthew G. Knepley 
225020f4b53cSBarry Smith   Collective
2251c0f8e1fdSMatthew G. Knepley 
22521555c271SMatthew G. Knepley   Input Parameters:
2253a1cb98faSBarry Smith + dm   - The `DM`
22545f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h
22551555c271SMatthew G. Knepley 
22561555c271SMatthew G. Knepley   Output Parameter:
2257a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient
22581555c271SMatthew G. Knepley 
22591555c271SMatthew G. Knepley   Level: developer
22601555c271SMatthew G. Knepley 
2261a1cb98faSBarry Smith   Note:
2262a1cb98faSBarry Smith   $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume
2263a1cb98faSBarry Smith 
22641cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
22651555c271SMatthew G. Knepley @*/
2266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC)
2267d71ae5a4SJacob Faibussowitsch {
2268db1066baSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *)dm->data;
2269db1066baSMatthew G. Knepley   PetscInt         debug = mesh->printFEM;
22701555c271SMatthew G. Knepley   DM               dmC;
22711555c271SMatthew G. Knepley   PetscQuadrature  quad;
22721555c271SMatthew G. Knepley   PetscScalar     *interpolant, *gradsum;
22734bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
22744bee2e38SMatthew G. Knepley   PetscReal       *coords;
22751555c271SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
2276485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset;
22771555c271SMatthew G. Knepley 
22781555c271SMatthew G. Knepley   PetscFunctionBegin;
22799566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
22809566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmC));
22819566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
22829566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
22839566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
22844bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
22859566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
22865f80ce2aSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
22871555c271SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
22881555c271SMatthew G. Knepley     PetscObject  obj;
22891555c271SMatthew G. Knepley     PetscClassId id;
22901555c271SMatthew G. Knepley     PetscInt     Nc;
22911555c271SMatthew G. Knepley 
22929566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
22939566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
22941555c271SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
22951555c271SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
22961555c271SMatthew G. Knepley 
22979566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
22989566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
22991555c271SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
23001555c271SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
23011555c271SMatthew G. Knepley 
23029566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
23039566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
230463a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
23051555c271SMatthew G. Knepley     numComponents += Nc;
23061555c271SMatthew G. Knepley   }
23079566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
230863a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
23099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
23109566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
23119566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
23121555c271SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
23131555c271SMatthew G. Knepley     PetscScalar volsum = 0.0;
23141555c271SMatthew G. Knepley     PetscInt   *star   = NULL;
23151555c271SMatthew G. Knepley     PetscInt    starSize, st, d, fc;
23161555c271SMatthew G. Knepley 
23179566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(gradsum, coordDim * numComponents));
23189566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
23191555c271SMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
23201555c271SMatthew G. Knepley       const PetscInt cell = star[st];
23211555c271SMatthew G. Knepley       PetscScalar   *grad = &gradsum[coordDim * numComponents];
23221555c271SMatthew G. Knepley       PetscScalar   *x    = NULL;
23231555c271SMatthew G. Knepley       PetscReal      vol  = 0.0;
23241555c271SMatthew G. Knepley 
23251555c271SMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
23269566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
23279566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
23281555c271SMatthew G. Knepley       for (field = 0, fieldOffset = 0; field < numFields; ++field) {
23291555c271SMatthew G. Knepley         PetscObject  obj;
23301555c271SMatthew G. Knepley         PetscClassId id;
23311555c271SMatthew G. Knepley         PetscInt     Nb, Nc, q, qc = 0;
23321555c271SMatthew G. Knepley 
23339566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(grad, coordDim * numComponents));
23349566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, field, NULL, &obj));
23359566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
23369371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
23379371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
23389371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
23399371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
23409371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
23419371c9d4SSatish Balay           Nb = 1;
23429371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
23431555c271SMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
23442a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
23452a4e142eSMatthew G. Knepley 
23462a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
23472a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
23482a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
23492a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
235063a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
23519566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant));
235263a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
23531555c271SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
235453d2db2dSJoe Wallwork             const PetscReal wt = quadWeights[q * qNc + qc];
23551555c271SMatthew G. Knepley 
23564bee2e38SMatthew G. Knepley             for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q];
23571555c271SMatthew G. Knepley           }
23584bee2e38SMatthew G. Knepley           vol += quadWeights[q * qNc] * fegeom.detJ[q];
23591555c271SMatthew G. Knepley         }
23601555c271SMatthew G. Knepley         fieldOffset += Nb;
23611555c271SMatthew G. Knepley         qc += Nc;
23621555c271SMatthew G. Knepley       }
23639566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
2364f8527842SMatthew G. Knepley       for (fc = 0; fc < numComponents; ++fc) {
2365ad540459SPierre Jolivet         for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d];
2366f8527842SMatthew G. Knepley       }
2367f8527842SMatthew G. Knepley       volsum += vol;
2368db1066baSMatthew G. Knepley       if (debug) {
23699566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell));
23701555c271SMatthew G. Knepley         for (fc = 0; fc < numComponents; ++fc) {
23711555c271SMatthew G. Knepley           for (d = 0; d < coordDim; ++d) {
23729566063dSJacob Faibussowitsch             if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
23739566063dSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d])));
23741555c271SMatthew G. Knepley           }
23751555c271SMatthew G. Knepley         }
23769566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
2377db1066baSMatthew G. Knepley       }
23781555c271SMatthew G. Knepley     }
23791555c271SMatthew G. Knepley     for (fc = 0; fc < numComponents; ++fc) {
23801555c271SMatthew G. Knepley       for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum;
23811555c271SMatthew G. Knepley     }
23829566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
23839566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES));
23841555c271SMatthew G. Knepley   }
23859566063dSJacob Faibussowitsch   PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
23863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23871555c271SMatthew G. Knepley }
23881555c271SMatthew G. Knepley 
23896493148fSStefano Zampini PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec locX, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user)
2390d71ae5a4SJacob Faibussowitsch {
2391cbf8eb3cSStefano Zampini   DM           dmAux = NULL, plexA = NULL;
239261aaff12SToby Isaac   PetscDS      prob, probAux       = NULL;
239373d901b8SMatthew G. Knepley   PetscSection section, sectionAux;
23946493148fSStefano Zampini   Vec          locA;
2395c330f8ffSToby Isaac   PetscInt     dim, numCells = cEnd - cStart, c, f;
2396c330f8ffSToby Isaac   PetscBool    useFVM = PETSC_FALSE;
2397338f77d5SMatthew G. Knepley   /* DS */
2398338f77d5SMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x, numConstants;
2399338f77d5SMatthew G. Knepley   PetscInt           NfAux, totDimAux, *aOff;
24008e3a54c0SPierre Jolivet   PetscScalar       *u, *a = NULL;
2401338f77d5SMatthew G. Knepley   const PetscScalar *constants;
2402338f77d5SMatthew G. Knepley   /* Geometry */
2403c330f8ffSToby Isaac   PetscFEGeom       *cgeomFEM;
2404338f77d5SMatthew G. Knepley   DM                 dmGrad;
2405c330f8ffSToby Isaac   PetscQuadrature    affineQuad      = NULL;
2406338f77d5SMatthew G. Knepley   Vec                cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
2407b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
2408338f77d5SMatthew G. Knepley   const PetscScalar *lgrad;
2409b7260050SToby Isaac   PetscInt           maxDegree;
2410c330f8ffSToby Isaac   DMField            coordField;
2411c330f8ffSToby Isaac   IS                 cellIS;
241273d901b8SMatthew G. Knepley 
241373d901b8SMatthew G. Knepley   PetscFunctionBegin;
24149566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
24159566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
24169566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
24179566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
2418338f77d5SMatthew G. Knepley   /* Determine which discretizations we have */
2419b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2420b5a3613cSMatthew G. Knepley     PetscObject  obj;
2421b5a3613cSMatthew G. Knepley     PetscClassId id;
2422b5a3613cSMatthew G. Knepley 
24239566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
24249566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2425338f77d5SMatthew G. Knepley     if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE;
2426338f77d5SMatthew G. Knepley   }
2427338f77d5SMatthew G. Knepley   /* Read DS information */
24289566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
24299566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
24309566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
24319566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS));
24329566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
2433338f77d5SMatthew G. Knepley   /* Read Auxiliary DS information */
24349566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
24359a2a23afSMatthew G. Knepley   if (locA) {
24369566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
2437cbf8eb3cSStefano Zampini     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
24389566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
24399566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
24409566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
24419566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
24429566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
2443338f77d5SMatthew G. Knepley   }
2444338f77d5SMatthew G. Knepley   /* Allocate data  arrays */
24459566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(numCells * totDim, &u));
24469566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
2447338f77d5SMatthew G. Knepley   /* Read out geometry */
24489566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
24499566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
2450b7260050SToby Isaac   if (maxDegree <= 1) {
24519566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
2452ac9d17c7SMatthew G. Knepley     if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FEGEOM_BASIC, &cgeomFEM));
2453b5a3613cSMatthew G. Knepley   }
2454b5a3613cSMatthew G. Knepley   if (useFVM) {
2455338f77d5SMatthew G. Knepley     PetscFV   fv = NULL;
2456b5a3613cSMatthew G. Knepley     Vec       grad;
2457b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
2458b5a3613cSMatthew G. Knepley     PetscBool compGrad;
2459b5a3613cSMatthew G. Knepley 
2460338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
2461338f77d5SMatthew G. Knepley       PetscObject  obj;
2462338f77d5SMatthew G. Knepley       PetscClassId id;
2463338f77d5SMatthew G. Knepley 
24649566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
24659566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
24669371c9d4SSatish Balay       if (id == PETSCFV_CLASSID) {
24679371c9d4SSatish Balay         fv = (PetscFV)obj;
24689371c9d4SSatish Balay         break;
24699371c9d4SSatish Balay       }
2470338f77d5SMatthew G. Knepley     }
24719566063dSJacob Faibussowitsch     PetscCall(PetscFVGetComputeGradients(fv, &compGrad));
24729566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE));
24739566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM));
24749566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad));
24759566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, compGrad));
24769566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
2477b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
24789566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
24799566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmGrad, &grad));
24809566063dSJacob Faibussowitsch     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
2481b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
24829566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
24839566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
24849566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
24859566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
2486b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
24879566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad));
24889566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
2489b5a3613cSMatthew G. Knepley   }
2490338f77d5SMatthew G. Knepley   /* Read out data from inputs */
249173d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
249273d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
249373d901b8SMatthew G. Knepley     PetscInt     i;
249473d901b8SMatthew G. Knepley 
24959566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x));
24960f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
24979566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x));
249873d901b8SMatthew G. Knepley     if (dmAux) {
2499cbf8eb3cSStefano Zampini       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, c, NULL, &x));
25000f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
2501cbf8eb3cSStefano Zampini       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, c, NULL, &x));
250273d901b8SMatthew G. Knepley     }
250373d901b8SMatthew G. Knepley   }
2504338f77d5SMatthew G. Knepley   /* Do integration for each field */
250573d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2506c1f031eeSMatthew G. Knepley     PetscObject  obj;
2507c1f031eeSMatthew G. Knepley     PetscClassId id;
2508c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
250973d901b8SMatthew G. Knepley 
25109566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
25119566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2512c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
2513c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE)obj;
2514c1f031eeSMatthew G. Knepley       PetscQuadrature q;
2515c330f8ffSToby Isaac       PetscFEGeom    *chunkGeom = NULL;
2516c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
2517c1f031eeSMatthew G. Knepley 
25189566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
25199566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
25209566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
25219566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
2522c1f031eeSMatthew G. Knepley       blockSize = Nb * Nq;
252373d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
25249566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
252573d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
252673d901b8SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
252773d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
252873d901b8SMatthew G. Knepley       offset    = numCells - Nr;
2529ac9d17c7SMatthew G. Knepley       if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FEGEOM_BASIC, &cgeomFEM));
25309566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
25319566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral));
25329566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom));
25338e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &cintegral[offset * Nf]));
25349566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom));
253548a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
2536c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
2537c1f031eeSMatthew G. Knepley       PetscInt      foff;
2538*2192575eSBarry Smith       PetscPointFn *obj_func;
2539c1f031eeSMatthew G. Knepley 
25409566063dSJacob Faibussowitsch       PetscCall(PetscDSGetObjective(prob, f, &obj_func));
25419566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, f, &foff));
2542c1f031eeSMatthew G. Knepley       if (obj_func) {
2543c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
2544b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
2545d627b919SMatthew G. Knepley           PetscScalar  lint = 0.;
2546b5a3613cSMatthew G. Knepley 
25479566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x));
254855bffe1bSPierre Jolivet           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, PetscSafePointerPlusOffset(a, totDimAux * c), NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint);
2549338f77d5SMatthew G. Knepley           cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume;
255073d901b8SMatthew G. Knepley         }
2551c1f031eeSMatthew G. Knepley       }
255263a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
2553c1f031eeSMatthew G. Knepley   }
2554338f77d5SMatthew G. Knepley   /* Cleanup data arrays */
2555b5a3613cSMatthew G. Knepley   if (useFVM) {
25569566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
25579566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
25589566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
25599566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&faceGeometryFVM));
25609566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cellGeometryFVM));
25619566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&dmGrad));
2562b5a3613cSMatthew G. Knepley   }
25639566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscFree(a));
2564cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&plexA));
25659566063dSJacob Faibussowitsch   PetscCall(PetscFree(u));
2566338f77d5SMatthew G. Knepley   /* Cleanup */
256748a46eb9SPierre Jolivet   if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
25689566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&affineQuad));
25699566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
25703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2571338f77d5SMatthew G. Knepley }
2572338f77d5SMatthew G. Knepley 
2573338f77d5SMatthew G. Knepley /*@
2574338f77d5SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user
2575338f77d5SMatthew G. Knepley 
2576338f77d5SMatthew G. Knepley   Input Parameters:
2577338f77d5SMatthew G. Knepley + dm   - The mesh
2578338f77d5SMatthew G. Knepley . X    - Global input vector
2579338f77d5SMatthew G. Knepley - user - The user context
2580338f77d5SMatthew G. Knepley 
2581338f77d5SMatthew G. Knepley   Output Parameter:
2582338f77d5SMatthew G. Knepley . integral - Integral for each field
2583338f77d5SMatthew G. Knepley 
2584338f77d5SMatthew G. Knepley   Level: developer
2585338f77d5SMatthew G. Knepley 
25861cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2587338f77d5SMatthew G. Knepley @*/
2588d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user)
2589d71ae5a4SJacob Faibussowitsch {
2590cbf8eb3cSStefano Zampini   PetscInt     printFEM;
2591b8feb594SMatthew G. Knepley   PetscScalar *cintegral, *lintegral;
2592412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
25936493148fSStefano Zampini   Vec          locX;
2594338f77d5SMatthew G. Knepley 
2595338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2596338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2597338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
25984f572ea9SToby Isaac   PetscAssertPointer(integral, 3);
25999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2600cbf8eb3cSStefano Zampini   PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE));
26019566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
26029566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
26039566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2604338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
26059566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral));
26066493148fSStefano Zampini   /* Get local solution with boundary values */
26076493148fSStefano Zampini   PetscCall(DMGetLocalVector(dm, &locX));
26086493148fSStefano Zampini   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
26096493148fSStefano Zampini   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
26106493148fSStefano Zampini   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
26116493148fSStefano Zampini   PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user));
26126493148fSStefano Zampini   PetscCall(DMRestoreLocalVector(dm, &locX));
2613cbf8eb3cSStefano Zampini   printFEM = ((DM_Plex *)dm->data)->printFEM;
2614338f77d5SMatthew G. Knepley   /* Sum up values */
2615338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2616338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2617338f77d5SMatthew G. Knepley 
2618cbf8eb3cSStefano Zampini     if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
2619b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f];
2620338f77d5SMatthew G. Knepley   }
2621e91c04dfSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
2622cbf8eb3cSStefano Zampini   if (printFEM) {
26239566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:"));
26249566063dSJacob Faibussowitsch     for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f])));
26259566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n"));
262673d901b8SMatthew G. Knepley   }
26279566063dSJacob Faibussowitsch   PetscCall(PetscFree2(lintegral, cintegral));
26289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2629cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&dm));
26303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2631338f77d5SMatthew G. Knepley }
2632338f77d5SMatthew G. Knepley 
2633338f77d5SMatthew G. Knepley /*@
2634338f77d5SMatthew G. Knepley   DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user
2635338f77d5SMatthew G. Knepley 
2636338f77d5SMatthew G. Knepley   Input Parameters:
2637338f77d5SMatthew G. Knepley + dm   - The mesh
2638338f77d5SMatthew G. Knepley . X    - Global input vector
2639338f77d5SMatthew G. Knepley - user - The user context
2640338f77d5SMatthew G. Knepley 
2641338f77d5SMatthew G. Knepley   Output Parameter:
264260225df5SJacob Faibussowitsch . F - Cellwise integrals for each field
2643338f77d5SMatthew G. Knepley 
2644338f77d5SMatthew G. Knepley   Level: developer
2645338f77d5SMatthew G. Knepley 
26461cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()`
2647338f77d5SMatthew G. Knepley @*/
2648d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user)
2649d71ae5a4SJacob Faibussowitsch {
2650cbf8eb3cSStefano Zampini   PetscInt     printFEM;
2651338f77d5SMatthew G. Knepley   DM           dmF;
26529c8ab049SStefano Zampini   PetscSection sectionF = NULL;
2653338f77d5SMatthew G. Knepley   PetscScalar *cintegral, *af;
26549c8ab049SStefano Zampini   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell, n;
26556493148fSStefano Zampini   Vec          locX;
2656338f77d5SMatthew G. Knepley 
2657338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2658338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2659338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2660338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(F, VEC_CLASSID, 3);
26619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2662cbf8eb3cSStefano Zampini   PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE));
26639566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
26649566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
26659566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2666338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
26679566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral));
26686493148fSStefano Zampini   /* Get local solution with boundary values */
26696493148fSStefano Zampini   PetscCall(DMGetLocalVector(dm, &locX));
26706493148fSStefano Zampini   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
26716493148fSStefano Zampini   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
26726493148fSStefano Zampini   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
26736493148fSStefano Zampini   PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user));
26746493148fSStefano Zampini   PetscCall(DMRestoreLocalVector(dm, &locX));
2675338f77d5SMatthew G. Knepley   /* Put values in F */
26769566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &af));
26779c8ab049SStefano Zampini   PetscCall(VecGetDM(F, &dmF));
26789c8ab049SStefano Zampini   if (dmF) PetscCall(DMGetLocalSection(dmF, &sectionF));
26799c8ab049SStefano Zampini   PetscCall(VecGetLocalSize(F, &n));
26809c8ab049SStefano Zampini   PetscCheck(n >= (cEnd - cStart) * Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vector size %" PetscInt_FMT " < %" PetscInt_FMT, n, (cEnd - cStart) * Nf);
2681cbf8eb3cSStefano Zampini   printFEM = ((DM_Plex *)dm->data)->printFEM;
2682338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2683338f77d5SMatthew G. Knepley     const PetscInt c   = cell - cStart;
26849c8ab049SStefano Zampini     PetscInt       dof = Nf, off = c * Nf;
2685338f77d5SMatthew G. Knepley 
2686cbf8eb3cSStefano Zampini     if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
26879c8ab049SStefano Zampini     if (sectionF) {
26889566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionF, cell, &dof));
26899566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(sectionF, cell, &off));
26909c8ab049SStefano Zampini     }
269163a3b9bcSJacob Faibussowitsch     PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf);
2692338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f];
2693338f77d5SMatthew G. Knepley   }
26949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &af));
26959566063dSJacob Faibussowitsch   PetscCall(PetscFree(cintegral));
26969566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2697cbf8eb3cSStefano Zampini   PetscCall(DMDestroy(&dm));
26983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
269973d901b8SMatthew G. Knepley }
270073d901b8SMatthew G. Knepley 
270179ab67a3SMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user)
2702d71ae5a4SJacob Faibussowitsch {
27039b6f715bSMatthew G. Knepley   DM                 plex = NULL, plexA = NULL;
2704a6e0b375SMatthew G. Knepley   DMEnclosureType    encAux;
27059b6f715bSMatthew G. Knepley   PetscDS            prob, probAux       = NULL;
27069b6f715bSMatthew G. Knepley   PetscSection       section, sectionAux = NULL;
27079b6f715bSMatthew G. Knepley   Vec                locA = NULL;
27089b6f715bSMatthew G. Knepley   DMField            coordField;
27099b6f715bSMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x;
27109b6f715bSMatthew G. Knepley   PetscInt           NfAux = 0, totDimAux = 0, *aOff = NULL;
27119b6f715bSMatthew G. Knepley   PetscScalar       *u, *a = NULL;
271264c72086SMatthew G. Knepley   const PetscScalar *constants;
27139b6f715bSMatthew G. Knepley   PetscInt           numConstants, f;
271464c72086SMatthew G. Knepley 
271564c72086SMatthew G. Knepley   PetscFunctionBegin;
27169566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
27179566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
27189566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
27199566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
27209566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
272164c72086SMatthew G. Knepley   /* Determine which discretizations we have */
27229b6f715bSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
272364c72086SMatthew G. Knepley     PetscObject  obj;
272464c72086SMatthew G. Knepley     PetscClassId id;
272564c72086SMatthew G. Knepley 
27269566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
27279566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
272863a3b9bcSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f);
272964c72086SMatthew G. Knepley   }
273064c72086SMatthew G. Knepley   /* Read DS information */
27319566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
27329566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
27339566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
27349566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
273564c72086SMatthew G. Knepley   /* Read Auxiliary DS information */
27369566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
27379b6f715bSMatthew G. Knepley   if (locA) {
27389b6f715bSMatthew G. Knepley     DM dmAux;
27399b6f715bSMatthew G. Knepley 
27409566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
27419566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
27429566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
27439566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
27449566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
27459566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
27469566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
27479566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
274864c72086SMatthew G. Knepley   }
27499b6f715bSMatthew G. Knepley   /* Integrate over points */
27509b6f715bSMatthew G. Knepley   {
27519b6f715bSMatthew G. Knepley     PetscFEGeom    *fgeom, *chunkGeom = NULL;
2752b7260050SToby Isaac     PetscInt        maxDegree;
27539b6f715bSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
27549b6f715bSMatthew G. Knepley     const PetscInt *points;
27559b6f715bSMatthew G. Knepley     PetscInt        numFaces, face, Nq, field;
27569b6f715bSMatthew G. Knepley     PetscInt        numChunks, chunkSize, chunk, Nr, offset;
275764c72086SMatthew G. Knepley 
27589566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
27599566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
276032603206SJames Wright     PetscCall(PetscCalloc2(numFaces * totDim, &u, (locA ? (size_t)numFaces * totDimAux : 0), &a));
27619566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
276279ab67a3SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
276379ab67a3SMatthew G. Knepley       const PetscInt point = points[face], *support;
276479ab67a3SMatthew G. Knepley       PetscScalar   *x     = NULL;
276579ab67a3SMatthew G. Knepley 
276679ab67a3SMatthew G. Knepley       PetscCall(DMPlexGetSupport(dm, point, &support));
276779ab67a3SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
276879ab67a3SMatthew G. Knepley       for (PetscInt i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
276979ab67a3SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
277079ab67a3SMatthew G. Knepley       if (locA) {
277179ab67a3SMatthew G. Knepley         PetscInt subp;
277279ab67a3SMatthew G. Knepley         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
277379ab67a3SMatthew G. Knepley         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
277479ab67a3SMatthew G. Knepley         for (PetscInt i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i];
277579ab67a3SMatthew G. Knepley         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
277679ab67a3SMatthew G. Knepley       }
277779ab67a3SMatthew G. Knepley     }
277864c72086SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
277964c72086SMatthew G. Knepley       PetscFE fe;
278064c72086SMatthew G. Knepley 
27819566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe));
27829566063dSJacob Faibussowitsch       if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
27839b6f715bSMatthew G. Knepley       if (!qGeom) {
27849566063dSJacob Faibussowitsch         PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
27859566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)qGeom));
27869b6f715bSMatthew G. Knepley       }
27879566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
2788ac9d17c7SMatthew G. Knepley       PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_FEGEOM_BOUNDARY, &fgeom));
27899b6f715bSMatthew G. Knepley       /* Get blocking */
27909b6f715bSMatthew G. Knepley       {
27919b6f715bSMatthew G. Knepley         PetscQuadrature q;
27929b6f715bSMatthew G. Knepley         PetscInt        numBatches, batchSize, numBlocks, blockSize;
27939b6f715bSMatthew G. Knepley         PetscInt        Nq, Nb;
27949b6f715bSMatthew G. Knepley 
27959566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
27969566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &q));
27979566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
27989566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
279964c72086SMatthew G. Knepley         blockSize = Nb * Nq;
280064c72086SMatthew G. Knepley         batchSize = numBlocks * blockSize;
28019b6f715bSMatthew G. Knepley         chunkSize = numBatches * batchSize;
28029566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
28039b6f715bSMatthew G. Knepley         numChunks = numFaces / chunkSize;
28049b6f715bSMatthew G. Knepley         Nr        = numFaces % chunkSize;
280564c72086SMatthew G. Knepley         offset    = numFaces - Nr;
280664c72086SMatthew G. Knepley       }
28079b6f715bSMatthew G. Knepley       /* Do integration for each field */
28089b6f715bSMatthew G. Knepley       for (chunk = 0; chunk < numChunks; ++chunk) {
28099566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom));
281079ab67a3SMatthew G. Knepley         PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], chunkSize, chunkGeom, &u[chunk * chunkSize * totDim], probAux, PetscSafePointerPlusOffset(a, chunk * chunkSize * totDimAux), &fintegral[chunk * chunkSize * Nf]));
28119566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
281264c72086SMatthew G. Knepley       }
28139566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
281479ab67a3SMatthew G. Knepley       PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &fintegral[offset * Nf]));
28159566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
281664c72086SMatthew G. Knepley       /* Cleanup data arrays */
2817ac9d17c7SMatthew G. Knepley       PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_FEGEOM_BOUNDARY, &fgeom));
28189566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&qGeom));
281979ab67a3SMatthew G. Knepley     }
28209566063dSJacob Faibussowitsch     PetscCall(PetscFree2(u, a));
28219566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
282264c72086SMatthew G. Knepley   }
28239566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
28249566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
28253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28269b6f715bSMatthew G. Knepley }
28279b6f715bSMatthew G. Knepley 
282860225df5SJacob Faibussowitsch /*@C
28299b6f715bSMatthew G. Knepley   DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user
28309b6f715bSMatthew G. Knepley 
28319b6f715bSMatthew G. Knepley   Input Parameters:
28329b6f715bSMatthew G. Knepley + dm      - The mesh
28339b6f715bSMatthew G. Knepley . X       - Global input vector
2834a1cb98faSBarry Smith . label   - The boundary `DMLabel`
2835a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values
2836a1cb98faSBarry Smith . vals    - The label values to use, or NULL for all values
283779ab67a3SMatthew G. Knepley . funcs   - The functions to integrate along the boundary for each field
28389b6f715bSMatthew G. Knepley - user    - The user context
28399b6f715bSMatthew G. Knepley 
28409b6f715bSMatthew G. Knepley   Output Parameter:
28419b6f715bSMatthew G. Knepley . integral - Integral for each field
28429b6f715bSMatthew G. Knepley 
28439b6f715bSMatthew G. Knepley   Level: developer
28449b6f715bSMatthew G. Knepley 
28451cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()`
28469b6f715bSMatthew G. Knepley @*/
284779ab67a3SMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user)
2848d71ae5a4SJacob Faibussowitsch {
28499b6f715bSMatthew G. Knepley   Vec          locX;
28509b6f715bSMatthew G. Knepley   PetscSection section;
28519b6f715bSMatthew G. Knepley   DMLabel      depthLabel;
28529b6f715bSMatthew G. Knepley   IS           facetIS;
28539b6f715bSMatthew G. Knepley   PetscInt     dim, Nf, f, v;
28549b6f715bSMatthew G. Knepley 
28559b6f715bSMatthew G. Knepley   PetscFunctionBegin;
28569b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
28579b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2858292bffcbSToby Isaac   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
28594f572ea9SToby Isaac   if (vals) PetscAssertPointer(vals, 5);
28604f572ea9SToby Isaac   PetscAssertPointer(integral, 7);
28619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
28629566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
28639566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
28649566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
28659566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
28669566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
28679b6f715bSMatthew G. Knepley   /* Get local solution with boundary values */
28689566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
28699566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
28709566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
28719566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
28729b6f715bSMatthew G. Knepley   /* Loop over label values */
28739566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(integral, Nf));
28749b6f715bSMatthew G. Knepley   for (v = 0; v < numVals; ++v) {
28759b6f715bSMatthew G. Knepley     IS           pointIS;
28769b6f715bSMatthew G. Knepley     PetscInt     numFaces, face;
28779b6f715bSMatthew G. Knepley     PetscScalar *fintegral;
28789b6f715bSMatthew G. Knepley 
28799566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS));
28809b6f715bSMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
28819b6f715bSMatthew G. Knepley     {
28829b6f715bSMatthew G. Knepley       IS isectIS;
28839b6f715bSMatthew G. Knepley 
28849b6f715bSMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
28859566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
28869566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
28879b6f715bSMatthew G. Knepley       pointIS = isectIS;
28889b6f715bSMatthew G. Knepley     }
28899566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
28909566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(numFaces * Nf, &fintegral));
289179ab67a3SMatthew G. Knepley     PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, funcs, fintegral, user));
28929b6f715bSMatthew G. Knepley     /* Sum point contributions into integral */
28939371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
28949371c9d4SSatish Balay       for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f];
28959566063dSJacob Faibussowitsch     PetscCall(PetscFree(fintegral));
28969566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
28979b6f715bSMatthew G. Knepley   }
28989566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
28999566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
29009566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
29013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
290264c72086SMatthew G. Knepley }
290364c72086SMatthew G. Knepley 
2904d69c5d34SMatthew G. Knepley /*@
29050318f8a0SStefano Zampini   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix from the coarse `DM` to a uniformly refined `DM`.
2906d69c5d34SMatthew G. Knepley 
2907d69c5d34SMatthew G. Knepley   Input Parameters:
2908cf51de39SMatthew G. Knepley + dmc       - The coarse mesh
2909cf51de39SMatthew G. Knepley . dmf       - The fine mesh
2910cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology
2911d69c5d34SMatthew G. Knepley - user      - The user context
2912d69c5d34SMatthew G. Knepley 
2913d69c5d34SMatthew G. Knepley   Output Parameter:
2914934789fcSMatthew G. Knepley . In - The interpolation matrix
2915d69c5d34SMatthew G. Knepley 
2916d69c5d34SMatthew G. Knepley   Level: developer
2917d69c5d34SMatthew G. Knepley 
2918ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`
2919d69c5d34SMatthew G. Knepley @*/
2920d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user)
2921d71ae5a4SJacob Faibussowitsch {
2922d69c5d34SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmc->data;
2923d69c5d34SMatthew G. Knepley   const char  *name = "Interpolator";
2924d69c5d34SMatthew G. Knepley   PetscFE     *feRef;
292597c42addSMatthew G. Knepley   PetscFV     *fvRef;
2926d69c5d34SMatthew G. Knepley   PetscSection fsection, fglobalSection;
2927d69c5d34SMatthew G. Knepley   PetscSection csection, cglobalSection;
2928d69c5d34SMatthew G. Knepley   PetscScalar *elemMat;
2929485ad865SMatthew G. Knepley   PetscInt     dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c;
29302ea9c922SToby Isaac   PetscInt     cTotDim = 0, rTotDim = 0;
2931d69c5d34SMatthew G. Knepley 
2932d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
29339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
29349566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
29359566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
29369566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
29379566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
29389566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
29399566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
29409566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
29419566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef));
2942d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
29432ea9c922SToby Isaac     PetscObject  obj, objc;
29442ea9c922SToby Isaac     PetscClassId id, idc;
29452ea9c922SToby Isaac     PetscInt     rNb = 0, Nc = 0, cNb = 0;
2946d69c5d34SMatthew G. Knepley 
29479566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmf, f, NULL, &obj));
29489566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
294997c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
295097c42addSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
295197c42addSMatthew G. Knepley 
2952cf51de39SMatthew G. Knepley       if (isRefined) {
29539566063dSJacob Faibussowitsch         PetscCall(PetscFERefine(fe, &feRef[f]));
2954cf51de39SMatthew G. Knepley       } else {
29559566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fe));
2956cf51de39SMatthew G. Knepley         feRef[f] = fe;
2957cf51de39SMatthew G. Knepley       }
29589566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &rNb));
29599566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
296097c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
296197c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
296297c42addSMatthew G. Knepley       PetscDualSpace Q;
296397c42addSMatthew G. Knepley 
2964cf51de39SMatthew G. Knepley       if (isRefined) {
29659566063dSJacob Faibussowitsch         PetscCall(PetscFVRefine(fv, &fvRef[f]));
2966cf51de39SMatthew G. Knepley       } else {
29679566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fv));
2968cf51de39SMatthew G. Knepley         fvRef[f] = fv;
2969cf51de39SMatthew G. Knepley       }
29709566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
29719566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &rNb));
29729566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
29739566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
297497c42addSMatthew G. Knepley     }
29759566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmc, f, NULL, &objc));
29769566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(objc, &idc));
29772ea9c922SToby Isaac     if (idc == PETSCFE_CLASSID) {
29782ea9c922SToby Isaac       PetscFE fe = (PetscFE)objc;
29792ea9c922SToby Isaac 
29809566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &cNb));
29812ea9c922SToby Isaac     } else if (id == PETSCFV_CLASSID) {
29822ea9c922SToby Isaac       PetscFV        fv = (PetscFV)obj;
29832ea9c922SToby Isaac       PetscDualSpace Q;
29842ea9c922SToby Isaac 
29859566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
29869566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &cNb));
2987d69c5d34SMatthew G. Knepley     }
29882ea9c922SToby Isaac     rTotDim += rNb;
29892ea9c922SToby Isaac     cTotDim += cNb;
29902ea9c922SToby Isaac   }
29919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat));
29929566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim));
2993d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
2994d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
2995d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
2996d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2997d69c5d34SMatthew G. Knepley     PetscReal       *points;
2998d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
2999d69c5d34SMatthew G. Knepley 
3000d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
300197c42addSMatthew G. Knepley     if (feRef[fieldI]) {
30029566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref));
30039566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc));
300497c42addSMatthew G. Knepley     } else {
30059566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref));
30069566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc));
300797c42addSMatthew G. Knepley     }
30089566063dSJacob Faibussowitsch     PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim));
3009d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
30109566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
30119566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL));
3012d69c5d34SMatthew G. Knepley       npoints += Np;
3013d69c5d34SMatthew G. Knepley     }
30149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(npoints * dim, &points));
3015d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
30169566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
30179566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL));
30189371c9d4SSatish Balay       for (p = 0; p < Np; ++p, ++k)
30199371c9d4SSatish Balay         for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d];
3020d69c5d34SMatthew G. Knepley     }
3021d69c5d34SMatthew G. Knepley 
3022d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
302397c42addSMatthew G. Knepley       PetscObject  obj;
302497c42addSMatthew G. Knepley       PetscClassId id;
30259c3cf19fSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j, qNc;
3026d69c5d34SMatthew G. Knepley 
30279566063dSJacob Faibussowitsch       PetscCall(DMGetField(dmc, fieldJ, NULL, &obj));
30289566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
302997c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
303097c42addSMatthew G. Knepley         PetscFE         fe = (PetscFE)obj;
3031ef0bb6c7SMatthew G. Knepley         PetscTabulation T  = NULL;
3032d69c5d34SMatthew G. Knepley 
3033d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
30349566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &NcJ));
30359566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &cpdim));
3036ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
3037ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
303863a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
30399566063dSJacob Faibussowitsch           PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T));
3040d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
30419566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
30429566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
304363a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
3044d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
304536a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
3046d172c84bSMatthew G. Knepley                 /*
3047d172c84bSMatthew G. Knepley                    cTotDim:            Total columns in element interpolation matrix, sum of number of dual basis functionals in each field
3048d172c84bSMatthew G. Knepley                    offsetI, offsetJ:   Offsets into the larger element interpolation matrix for different fields
3049d172c84bSMatthew G. Knepley                    fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals
3050d172c84bSMatthew G. Knepley                    qNC, Nc, Ncj, c:    Number of components in this field
3051d172c84bSMatthew G. Knepley                    Np, p:              Number of quad points in the fine grid functional i
3052d172c84bSMatthew G. Knepley                    k:                  i*Np + p, overall point number for the interpolation
3053d172c84bSMatthew G. Knepley                 */
3054ef0bb6c7SMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c];
305536a6d9c0SMatthew G. Knepley               }
3056d69c5d34SMatthew G. Knepley             }
3057d69c5d34SMatthew G. Knepley           }
30589566063dSJacob Faibussowitsch           PetscCall(PetscTabulationDestroy(&T));
3059ffe73a53SMatthew G. Knepley         }
306097c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
306197c42addSMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
306297c42addSMatthew G. Knepley 
306397c42addSMatthew G. Knepley         /* Evaluate constant function at points */
30649566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &NcJ));
306597c42addSMatthew G. Knepley         cpdim = 1;
306697c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
306797c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
306863a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
306997c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
30709566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
30719566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
307263a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
307397c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
307497c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
3075458eb97cSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c];
307697c42addSMatthew G. Knepley               }
307797c42addSMatthew G. Knepley             }
307897c42addSMatthew G. Knepley           }
307997c42addSMatthew G. Knepley         }
308097c42addSMatthew G. Knepley       }
3081d172c84bSMatthew G. Knepley       offsetJ += cpdim;
3082d69c5d34SMatthew G. Knepley     }
3083d172c84bSMatthew G. Knepley     offsetI += fpdim;
30849566063dSJacob Faibussowitsch     PetscCall(PetscFree(points));
3085d69c5d34SMatthew G. Knepley   }
30869566063dSJacob Faibussowitsch   if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat));
30877f5b169aSMatthew G. Knepley   /* Preallocate matrix */
30887f5b169aSMatthew G. Knepley   {
3089c094ef40SMatthew G. Knepley     Mat          preallocator;
3090c094ef40SMatthew G. Knepley     PetscScalar *vals;
3091c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
3092c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
30937f5b169aSMatthew G. Knepley 
30949566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(In, &locRows, &locCols));
30959566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator));
30969566063dSJacob Faibussowitsch     PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
30979566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
30989566063dSJacob Faibussowitsch     PetscCall(MatSetUp(preallocator));
30999566063dSJacob Faibussowitsch     PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices));
31007f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3101cf51de39SMatthew G. Knepley       if (isRefined) {
31029566063dSJacob Faibussowitsch         PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices));
31039566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES));
3104cf51de39SMatthew G. Knepley       } else {
3105e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, preallocator, cell, vals, INSERT_VALUES));
3106cf51de39SMatthew G. Knepley       }
31077f5b169aSMatthew G. Knepley     }
31089566063dSJacob Faibussowitsch     PetscCall(PetscFree3(vals, cellCIndices, cellFIndices));
31099566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
31109566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
31119566063dSJacob Faibussowitsch     PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In));
31129566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&preallocator));
31137f5b169aSMatthew G. Knepley   }
31147f5b169aSMatthew G. Knepley   /* Fill matrix */
31159566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(In));
3116d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
3117cf51de39SMatthew G. Knepley     if (isRefined) {
31189566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
3119cf51de39SMatthew G. Knepley     } else {
3120e8e188d2SZach Atkins       PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, In, c, elemMat, INSERT_VALUES));
3121cf51de39SMatthew G. Knepley     }
3122d69c5d34SMatthew G. Knepley   }
31239566063dSJacob Faibussowitsch   for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f]));
31249566063dSJacob Faibussowitsch   PetscCall(PetscFree2(feRef, fvRef));
31259566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
31269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
31279566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
31289318fe57SMatthew G. Knepley   if (mesh->printFEM > 1) {
31299566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name));
31302ce66baaSPierre Jolivet     PetscCall(MatFilter(In, 1.0e-10, PETSC_FALSE, PETSC_FALSE));
31319566063dSJacob Faibussowitsch     PetscCall(MatView(In, NULL));
3132d69c5d34SMatthew G. Knepley   }
31339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
31343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3135d69c5d34SMatthew G. Knepley }
31366c73c22cSMatthew G. Knepley 
3137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user)
3138d71ae5a4SJacob Faibussowitsch {
3139bd041c0cSMatthew G. Knepley   SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness");
3140bd041c0cSMatthew G. Knepley }
3141bd041c0cSMatthew G. Knepley 
314268132eb9SMatthew G. Knepley /*@
31430318f8a0SStefano Zampini   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix from the coarse `DM` to a non-nested fine `DM`.
314468132eb9SMatthew G. Knepley 
314568132eb9SMatthew G. Knepley   Input Parameters:
314668132eb9SMatthew G. Knepley + dmf  - The fine mesh
314768132eb9SMatthew G. Knepley . dmc  - The coarse mesh
314868132eb9SMatthew G. Knepley - user - The user context
314968132eb9SMatthew G. Knepley 
315068132eb9SMatthew G. Knepley   Output Parameter:
315168132eb9SMatthew G. Knepley . In - The interpolation matrix
315268132eb9SMatthew G. Knepley 
315368132eb9SMatthew G. Knepley   Level: developer
315468132eb9SMatthew G. Knepley 
3155ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`
315668132eb9SMatthew G. Knepley @*/
3157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
3158d71ae5a4SJacob Faibussowitsch {
315964e98e1dSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
316064e98e1dSMatthew G. Knepley   const char  *name = "Interpolator";
31614ef9d792SMatthew G. Knepley   PetscDS      prob;
3162a0806964SMatthew G. Knepley   Mat          interp;
3163a0806964SMatthew G. Knepley   PetscSection fsection, globalFSection;
3164a0806964SMatthew G. Knepley   PetscSection csection, globalCSection;
3165a0806964SMatthew G. Knepley   PetscInt     locRows, locCols;
31664ef9d792SMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
31674ef9d792SMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
31684ef9d792SMatthew G. Knepley   PetscScalar *elemMat;
3169a0806964SMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s;
31704ef9d792SMatthew G. Knepley 
31714ef9d792SMatthew G. Knepley   PetscFunctionBegin;
31729566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
31739566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
31749566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
31759566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
31769566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
31779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
31789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
31799566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
31809566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
31819566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
31829566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
3183a0806964SMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd));
31849566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
31859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
31864ef9d792SMatthew G. Knepley 
3187a0806964SMatthew G. Knepley   PetscCall(MatGetLocalSize(In, &locRows, &locCols));
3188a0806964SMatthew G. Knepley   PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp));
3189a0806964SMatthew G. Knepley   PetscCall(MatSetType(interp, MATPREALLOCATOR));
3190a0806964SMatthew G. Knepley   PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
3191a0806964SMatthew G. Knepley   PetscCall(MatSetUp(interp));
3192a0806964SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
31934ef9d792SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
31944ef9d792SMatthew G. Knepley       PetscObject      obj;
31954ef9d792SMatthew G. Knepley       PetscClassId     id;
3196c0d7054bSMatthew G. Knepley       PetscDualSpace   Q = NULL;
3197ef0bb6c7SMatthew G. Knepley       PetscTabulation  T = NULL;
31984ef9d792SMatthew G. Knepley       PetscQuadrature  f;
31994ef9d792SMatthew G. Knepley       const PetscReal *qpoints, *qweights;
3200d0f6233fSMatthew G. Knepley       PetscInt         Nc, qNc, Np, fpdim, off, i, d;
32014ef9d792SMatthew G. Knepley 
3202d0f6233fSMatthew G. Knepley       PetscCall(PetscDSGetFieldOffset(prob, field, &off));
32039566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, &obj));
32049566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
32054ef9d792SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
32064ef9d792SMatthew G. Knepley         PetscFE fe = (PetscFE)obj;
32074ef9d792SMatthew G. Knepley 
32089566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDualSpace(fe, &Q));
32099566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &Nc));
3210a0806964SMatthew G. Knepley         if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T));
32114ef9d792SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
32124ef9d792SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
32134ef9d792SMatthew G. Knepley 
32149566063dSJacob Faibussowitsch         PetscCall(PetscFVGetDualSpace(fv, &Q));
32154ef9d792SMatthew G. Knepley         Nc = 1;
321663a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
32179566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fpdim));
32184ef9d792SMatthew G. Knepley       /* For each fine grid cell */
32194ef9d792SMatthew G. Knepley       for (cell = cStart; cell < cEnd; ++cell) {
32204ef9d792SMatthew G. Knepley         PetscInt *findices, *cindices;
32214ef9d792SMatthew G. Knepley         PetscInt  numFIndices, numCIndices;
32224ef9d792SMatthew G. Knepley 
32239566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
32249566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3225d0f6233fSMatthew G. Knepley         PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim);
32264ef9d792SMatthew G. Knepley         for (i = 0; i < fpdim; ++i) {
32274ef9d792SMatthew G. Knepley           Vec                pointVec;
32284ef9d792SMatthew G. Knepley           PetscScalar       *pV;
322912111d7cSToby Isaac           PetscSF            coarseCellSF = NULL;
32303a93e3b7SToby Isaac           const PetscSFNode *coarseCells;
3231d0f6233fSMatthew G. Knepley           PetscInt           numCoarseCells, cpdim, row = findices[i + off], q, c, j;
32324ef9d792SMatthew G. Knepley 
32334ef9d792SMatthew G. Knepley           /* Get points from the dual basis functional quadrature */
32349566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetFunctional(Q, i, &f));
32359566063dSJacob Faibussowitsch           PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights));
323663a3b9bcSJacob Faibussowitsch           PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc);
32379566063dSJacob Faibussowitsch           PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec));
32389566063dSJacob Faibussowitsch           PetscCall(VecSetBlockSize(pointVec, dim));
32399566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
32404ef9d792SMatthew G. Knepley           for (q = 0; q < Np; ++q) {
3241c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
3242c330f8ffSToby Isaac 
32434ef9d792SMatthew G. Knepley             /* Transform point to real space */
3244c330f8ffSToby Isaac             CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
32454ef9d792SMatthew G. Knepley             for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
32464ef9d792SMatthew G. Knepley           }
32479566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
32484ef9d792SMatthew G. Knepley           /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
32491555c271SMatthew G. Knepley           /* OPT: Read this out from preallocation information */
32509566063dSJacob Faibussowitsch           PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
32514ef9d792SMatthew G. Knepley           /* Update preallocation info */
32529566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
32535f80ce2aSJacob Faibussowitsch           PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
32549566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
32554ef9d792SMatthew G. Knepley           for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3256826eb36dSMatthew G. Knepley             PetscReal       pVReal[3];
3257c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
3258826eb36dSMatthew G. Knepley 
32599566063dSJacob Faibussowitsch             PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3260a0806964SMatthew G. Knepley             if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim));
3261a0806964SMatthew G. Knepley             else cpdim = 1;
3262a0806964SMatthew G. Knepley 
3263a0806964SMatthew G. Knepley             if (s) {
32644ef9d792SMatthew G. Knepley               /* Transform points from real space to coarse reference space */
32659566063dSJacob Faibussowitsch               PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3266e2d86523SMatthew G. Knepley               for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3267c330f8ffSToby Isaac               CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
32684ef9d792SMatthew G. Knepley 
32694ef9d792SMatthew G. Knepley               if (id == PETSCFE_CLASSID) {
32704ef9d792SMatthew G. Knepley                 /* Evaluate coarse basis on contained point */
3271a0806964SMatthew G. Knepley                 PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T));
32729566063dSJacob Faibussowitsch                 PetscCall(PetscArrayzero(elemMat, cpdim));
32734ef9d792SMatthew G. Knepley                 /* Get elemMat entries by multiplying by weight */
32744ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
3275ef0bb6c7SMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c];
32764ef9d792SMatthew G. Knepley                 }
32774ef9d792SMatthew G. Knepley               } else {
32784ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
32799c3cf19fSMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c];
32804ef9d792SMatthew G. Knepley                 }
32814ef9d792SMatthew G. Knepley               }
32829566063dSJacob Faibussowitsch               if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
3283a0806964SMatthew G. Knepley             }
3284a0806964SMatthew G. Knepley             /* Update interpolator */
3285d0f6233fSMatthew G. Knepley             PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim);
3286a0806964SMatthew G. Knepley             PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES));
32879566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
32884ef9d792SMatthew G. Knepley           }
32899566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
32909566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseCellSF));
32919566063dSJacob Faibussowitsch           PetscCall(VecDestroy(&pointVec));
32924ef9d792SMatthew G. Knepley         }
32939566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
32944ef9d792SMatthew G. Knepley       }
3295a0806964SMatthew G. Knepley       if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3296a0806964SMatthew G. Knepley     }
3297a0806964SMatthew G. Knepley     if (!s) {
3298a0806964SMatthew G. Knepley       PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY));
3299a0806964SMatthew G. Knepley       PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY));
3300a0806964SMatthew G. Knepley       PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In));
3301a0806964SMatthew G. Knepley       PetscCall(MatDestroy(&interp));
3302a0806964SMatthew G. Knepley       interp = In;
3303a0806964SMatthew G. Knepley     }
33044ef9d792SMatthew G. Knepley   }
33059566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
33069566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
33079566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
33089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
33099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
33109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
33113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33124ef9d792SMatthew G. Knepley }
33134ef9d792SMatthew G. Knepley 
331446fa42a0SMatthew G. Knepley /*@
33150318f8a0SStefano Zampini   DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix from the coarse `DM` to a non-nested fine `DM`.
3316bd041c0cSMatthew G. Knepley 
3317bd041c0cSMatthew G. Knepley   Input Parameters:
3318bd041c0cSMatthew G. Knepley + dmf  - The fine mesh
3319bd041c0cSMatthew G. Knepley . dmc  - The coarse mesh
3320bd041c0cSMatthew G. Knepley - user - The user context
3321bd041c0cSMatthew G. Knepley 
3322bd041c0cSMatthew G. Knepley   Output Parameter:
3323bd041c0cSMatthew G. Knepley . mass - The mass matrix
3324bd041c0cSMatthew G. Knepley 
3325bd041c0cSMatthew G. Knepley   Level: developer
3326bd041c0cSMatthew G. Knepley 
3327ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`
3328bd041c0cSMatthew G. Knepley @*/
3329d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user)
3330d71ae5a4SJacob Faibussowitsch {
3331bd041c0cSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
3332bd041c0cSMatthew G. Knepley   const char  *name = "Mass Matrix";
3333bd041c0cSMatthew G. Knepley   PetscDS      prob;
3334bd041c0cSMatthew G. Knepley   PetscSection fsection, csection, globalFSection, globalCSection;
3335e8f14785SLisandro Dalcin   PetscHSetIJ  ht;
3336bd041c0cSMatthew G. Knepley   PetscLayout  rLayout;
3337bd041c0cSMatthew G. Knepley   PetscInt    *dnz, *onz;
3338bd041c0cSMatthew G. Knepley   PetscInt     locRows, rStart, rEnd;
3339bd041c0cSMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
3340bd041c0cSMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
3341bd041c0cSMatthew G. Knepley   PetscScalar *elemMat;
3342bd041c0cSMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
3343bd041c0cSMatthew G. Knepley 
3344bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
33459566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
33469566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
33479566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
33489566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
33499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
33509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
33519566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
33529566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
33539566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
33549566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
33559566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd));
33569566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
33579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
3358bd041c0cSMatthew G. Knepley 
33599566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mass, &locRows, NULL));
33609566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout));
33619566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(rLayout, locRows));
33629566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(rLayout, 1));
33639566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rLayout));
33649566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd));
33659566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rLayout));
33669566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz));
33679566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJCreate(&ht));
3368bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3369bd041c0cSMatthew G. Knepley     PetscObject      obj;
3370bd041c0cSMatthew G. Knepley     PetscClassId     id;
3371bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3372bd041c0cSMatthew G. Knepley     const PetscReal *qpoints;
3373bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3374bd041c0cSMatthew G. Knepley 
33759566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
33769566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
33779566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
33789566063dSJacob Faibussowitsch     else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
33799566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL));
3380bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3381bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3382bd041c0cSMatthew G. Knepley       Vec                pointVec;
3383bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3384bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3385bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3386bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, q, c;
3387bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3388bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3389bd041c0cSMatthew G. Knepley 
33909566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
33919566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3392bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
33939566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
33949566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
33959566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3396bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3397c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3398c330f8ffSToby Isaac 
3399bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3400c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3401bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3402bd041c0cSMatthew G. Knepley       }
34039566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3404bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
34059566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
34069566063dSJacob Faibussowitsch       PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view"));
3407bd041c0cSMatthew G. Knepley       /* Update preallocation info */
34089566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
34095f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
3410bd041c0cSMatthew G. Knepley       {
3411e8f14785SLisandro Dalcin         PetscHashIJKey key;
3412e8f14785SLisandro Dalcin         PetscBool      missing;
3413bd041c0cSMatthew G. Knepley 
3414bd041c0cSMatthew G. Knepley         for (i = 0; i < numFIndices; ++i) {
3415e8f14785SLisandro Dalcin           key.i = findices[i];
3416e8f14785SLisandro Dalcin           if (key.i >= 0) {
3417bd041c0cSMatthew G. Knepley             /* Get indices for coarse elements */
3418bd041c0cSMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
34199566063dSJacob Faibussowitsch               PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3420bd041c0cSMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
3421e8f14785SLisandro Dalcin                 key.j = cindices[c];
3422e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
34239566063dSJacob Faibussowitsch                 PetscCall(PetscHSetIJQueryAdd(ht, key, &missing));
3424bd041c0cSMatthew G. Knepley                 if (missing) {
3425e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart];
3426e8f14785SLisandro Dalcin                   else ++onz[key.i - rStart];
3427bd041c0cSMatthew G. Knepley                 }
3428bd041c0cSMatthew G. Knepley               }
34299566063dSJacob Faibussowitsch               PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3430bd041c0cSMatthew G. Knepley             }
3431bd041c0cSMatthew G. Knepley           }
3432bd041c0cSMatthew G. Knepley         }
3433bd041c0cSMatthew G. Knepley       }
34349566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
34359566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
34369566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3437bd041c0cSMatthew G. Knepley     }
3438bd041c0cSMatthew G. Knepley   }
34399566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJDestroy(&ht));
34409566063dSJacob Faibussowitsch   PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL));
34419566063dSJacob Faibussowitsch   PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
34429566063dSJacob Faibussowitsch   PetscCall(PetscFree2(dnz, onz));
3443bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3444bd041c0cSMatthew G. Knepley     PetscObject      obj;
3445bd041c0cSMatthew G. Knepley     PetscClassId     id;
3446ef0bb6c7SMatthew G. Knepley     PetscTabulation  T, Tfine;
3447bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3448bd041c0cSMatthew G. Knepley     const PetscReal *qpoints, *qweights;
3449bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3450bd041c0cSMatthew G. Knepley 
34519566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
34529566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3453ef0bb6c7SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
34549566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
34559566063dSJacob Faibussowitsch       PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine));
34569566063dSJacob Faibussowitsch       PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T));
3457ef0bb6c7SMatthew G. Knepley     } else {
34589566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
3459ef0bb6c7SMatthew G. Knepley     }
34609566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights));
3461bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3462bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3463bd041c0cSMatthew G. Knepley       Vec                pointVec;
3464bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3465bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3466bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3467bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, cpdim, q, c, j;
3468bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3469bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3470bd041c0cSMatthew G. Knepley 
34719566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
34729566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3473bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
34749566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
34759566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
34769566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3477bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3478c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3479c330f8ffSToby Isaac 
3480bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3481c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3482bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3483bd041c0cSMatthew G. Knepley       }
34849566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3485bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
34869566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
3487bd041c0cSMatthew G. Knepley       /* Update matrix */
34889566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
34895f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
34909566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3491bd041c0cSMatthew G. Knepley       for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3492bd041c0cSMatthew G. Knepley         PetscReal       pVReal[3];
3493c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3494c330f8ffSToby Isaac 
34959566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3496bd041c0cSMatthew G. Knepley         /* Transform points from real space to coarse reference space */
34979566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3498bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3499c330f8ffSToby Isaac         CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
3500bd041c0cSMatthew G. Knepley 
3501bd041c0cSMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
3502bd041c0cSMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
3503bd041c0cSMatthew G. Knepley 
3504bd041c0cSMatthew G. Knepley           /* Evaluate coarse basis on contained point */
35059566063dSJacob Faibussowitsch           PetscCall(PetscFEGetDimension(fe, &cpdim));
35069566063dSJacob Faibussowitsch           PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T));
3507bd041c0cSMatthew G. Knepley           /* Get elemMat entries by multiplying by weight */
3508bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
35099566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3510bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3511ef0bb6c7SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ;
3512bd041c0cSMatthew G. Knepley             }
3513bd041c0cSMatthew G. Knepley             /* Update interpolator */
35149566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
351563a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
35169566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3517bd041c0cSMatthew G. Knepley           }
3518bd041c0cSMatthew G. Knepley         } else {
3519bd041c0cSMatthew G. Knepley           cpdim = 1;
3520bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
35219566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3522bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3523bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ;
3524bd041c0cSMatthew G. Knepley             }
3525bd041c0cSMatthew G. Knepley             /* Update interpolator */
35269566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
352763a3b9bcSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices));
352863a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
35299566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3530bd041c0cSMatthew G. Knepley           }
3531bd041c0cSMatthew G. Knepley         }
35329566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3533bd041c0cSMatthew G. Knepley       }
35349566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
35359566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
35369566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
35379566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3538bd041c0cSMatthew G. Knepley     }
35399566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3540bd041c0cSMatthew G. Knepley   }
35419566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
35429566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
35439566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
35449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY));
35459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY));
35463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3547bd041c0cSMatthew G. Knepley }
3548bd041c0cSMatthew G. Knepley 
3549bd041c0cSMatthew G. Knepley /*@
355046fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
355146fa42a0SMatthew G. Knepley 
355246fa42a0SMatthew G. Knepley   Input Parameters:
355346fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
355460225df5SJacob Faibussowitsch . dmf  - The fine mesh
355546fa42a0SMatthew G. Knepley - user - The user context
355646fa42a0SMatthew G. Knepley 
355746fa42a0SMatthew G. Knepley   Output Parameter:
355846fa42a0SMatthew G. Knepley . sc - The mapping
355946fa42a0SMatthew G. Knepley 
356046fa42a0SMatthew G. Knepley   Level: developer
356146fa42a0SMatthew G. Knepley 
3562ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`
356346fa42a0SMatthew G. Knepley @*/
3564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
3565d71ae5a4SJacob Faibussowitsch {
3566e9d4ef1bSMatthew G. Knepley   PetscDS      prob;
35677c927364SMatthew G. Knepley   PetscFE     *feRef;
356897c42addSMatthew G. Knepley   PetscFV     *fvRef;
35697c927364SMatthew G. Knepley   Vec          fv, cv;
35707c927364SMatthew G. Knepley   IS           fis, cis;
35717c927364SMatthew G. Knepley   PetscSection fsection, fglobalSection, csection, cglobalSection;
35727c927364SMatthew G. Knepley   PetscInt    *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
3573485ad865SMatthew G. Knepley   PetscInt     cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m;
35746f3d3cbcSMatthew G. Knepley   PetscBool   *needAvg;
35757c927364SMatthew G. Knepley 
35767c927364SMatthew G. Knepley   PetscFunctionBegin;
35779566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
35789566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
35799566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
35809566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
35819566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
35829566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
35839566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
35849566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
35859566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
35869566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg));
35877c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
358897c42addSMatthew G. Knepley     PetscObject  obj;
358997c42addSMatthew G. Knepley     PetscClassId id;
3590aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
35917c927364SMatthew G. Knepley 
35929566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
35939566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
359497c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
359597c42addSMatthew G. Knepley       PetscFE    fe = (PetscFE)obj;
35966f3d3cbcSMatthew G. Knepley       PetscSpace sp;
35979b2fc754SMatthew G. Knepley       PetscInt   maxDegree;
359897c42addSMatthew G. Knepley 
35999566063dSJacob Faibussowitsch       PetscCall(PetscFERefine(fe, &feRef[f]));
36009566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &fNb));
36019566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
36029566063dSJacob Faibussowitsch       PetscCall(PetscFEGetBasisSpace(fe, &sp));
36039566063dSJacob Faibussowitsch       PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree));
36049b2fc754SMatthew G. Knepley       if (!maxDegree) needAvg[f] = PETSC_TRUE;
360597c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
360697c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
360797c42addSMatthew G. Knepley       PetscDualSpace Q;
360897c42addSMatthew G. Knepley 
36099566063dSJacob Faibussowitsch       PetscCall(PetscFVRefine(fv, &fvRef[f]));
36109566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
36119566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fNb));
36129566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
36136f3d3cbcSMatthew G. Knepley       needAvg[f] = PETSC_TRUE;
361497c42addSMatthew G. Knepley     }
3615d172c84bSMatthew G. Knepley     fTotDim += fNb;
36167c927364SMatthew G. Knepley   }
36179566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &cTotDim));
36189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cTotDim, &cmap));
36197c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
36207c927364SMatthew G. Knepley     PetscFE        feC;
362197c42addSMatthew G. Knepley     PetscFV        fvC;
36227c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
3623d172c84bSMatthew G. Knepley     PetscInt       order = -1, NcF, NcC, fpdim, cpdim;
36247c927364SMatthew G. Knepley 
362597c42addSMatthew G. Knepley     if (feRef[field]) {
36269566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC));
36279566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feC, &NcC));
36289566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[field], &NcF));
36299566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[field], &QF));
36309566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetOrder(QF, &order));
36319566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
36329566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feC, &QC));
36339566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
363497c42addSMatthew G. Knepley     } else {
36359566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC));
36369566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvC, &NcC));
36379566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF));
36389566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[field], &QF));
36399566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
36409566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvC, &QC));
36419566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
364297c42addSMatthew G. Knepley     }
364363a3b9bcSJacob Faibussowitsch     PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC);
36447c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
36457c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
3646d172c84bSMatthew G. Knepley       const PetscReal *cqpoints, *cqweights;
3647d172c84bSMatthew G. Knepley       PetscInt         NqcC, NpC;
364897c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
36497c927364SMatthew G. Knepley 
36509566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc));
36519566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights));
365263a3b9bcSJacob Faibussowitsch       PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC);
36531dca8a05SBarry Smith       PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
36547c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
36557c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
3656d172c84bSMatthew G. Knepley         const PetscReal *fqpoints, *fqweights;
36577c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
3658d172c84bSMatthew G. Knepley         PetscInt         NqcF, NpF;
36597c927364SMatthew G. Knepley 
36609566063dSJacob Faibussowitsch         PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc));
36619566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights));
366263a3b9bcSJacob Faibussowitsch         PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF);
36637c927364SMatthew G. Knepley         if (NpC != NpF) continue;
36647c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
36657c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
3666d172c84bSMatthew G. Knepley         for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]);
3667d172c84bSMatthew G. Knepley         if (sum < 1.0e-9) continue;
3668d172c84bSMatthew G. Knepley         cmap[offsetC + c] = offsetF + f;
366997c42addSMatthew G. Knepley         found             = PETSC_TRUE;
36707c927364SMatthew G. Knepley         break;
36717c927364SMatthew G. Knepley       }
367297c42addSMatthew G. Knepley       if (!found) {
367397c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
3674d172c84bSMatthew G. Knepley         if (fvRef[field] || (feRef[field] && order == 0)) {
3675d172c84bSMatthew G. Knepley           cmap[offsetC + c] = offsetF + 0;
367697c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
367797c42addSMatthew G. Knepley       }
36787c927364SMatthew G. Knepley     }
3679d172c84bSMatthew G. Knepley     offsetC += cpdim;
3680d172c84bSMatthew G. Knepley     offsetF += fpdim;
36817c927364SMatthew G. Knepley   }
36829371c9d4SSatish Balay   for (f = 0; f < Nf; ++f) {
36839371c9d4SSatish Balay     PetscCall(PetscFEDestroy(&feRef[f]));
36849371c9d4SSatish Balay     PetscCall(PetscFVDestroy(&fvRef[f]));
36859371c9d4SSatish Balay   }
36869566063dSJacob Faibussowitsch   PetscCall(PetscFree3(feRef, fvRef, needAvg));
36877c927364SMatthew G. Knepley 
36889566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmf, &fv));
36899566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmc, &cv));
36909566063dSJacob Faibussowitsch   PetscCall(VecGetOwnershipRange(cv, &startC, &endC));
36919566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m));
36929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices));
36939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &cindices));
36949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &findices));
36957c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
36967c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
36979566063dSJacob Faibussowitsch     PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices));
36987c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
36990bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
3700d2457c26SMatthew G. Knepley       PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, c, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]);
37017c927364SMatthew G. Knepley       cindices[cellCIndices[d] - startC] = cellCIndices[d];
37027c927364SMatthew G. Knepley       findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]];
37037c927364SMatthew G. Knepley     }
37047c927364SMatthew G. Knepley   }
37059566063dSJacob Faibussowitsch   PetscCall(PetscFree(cmap));
37069566063dSJacob Faibussowitsch   PetscCall(PetscFree2(cellCIndices, cellFIndices));
37077c927364SMatthew G. Knepley 
37089566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis));
37099566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis));
37109566063dSJacob Faibussowitsch   PetscCall(VecScatterCreate(cv, cis, fv, fis, sc));
37119566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cis));
37129566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&fis));
37139566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmf, &fv));
37149566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmc, &cv));
37159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
37163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3717cb1e1211SMatthew G Knepley }
3718a1cf66bbSMatthew G. Knepley 
37192f856554SMatthew G. Knepley /*@C
37202f856554SMatthew G. Knepley   DMPlexGetCellFields - Retrieve the field values values for a chunk of cells
37212f856554SMatthew G. Knepley 
37222f856554SMatthew G. Knepley   Input Parameters:
3723a1cb98faSBarry Smith + dm     - The `DM`
37242f856554SMatthew G. Knepley . cellIS - The cells to include
37252f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
3726ce78bad3SBarry Smith . locX_t - A local vector with solution field time derivatives, or `NULL`
3727ce78bad3SBarry Smith - locA   - A local vector with auxiliary fields, or `NULL`
37282f856554SMatthew G. Knepley 
37292f856554SMatthew G. Knepley   Output Parameters:
37302f856554SMatthew G. Knepley + u   - The field coefficients
37312f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
37322f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
37332f856554SMatthew G. Knepley 
37342f856554SMatthew G. Knepley   Level: developer
37352f856554SMatthew G. Knepley 
37361cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
37372f856554SMatthew G. Knepley @*/
3738ce78bad3SBarry Smith PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, PeOp Vec locX_t, PeOp Vec locA, PetscScalar *u[], PetscScalar *u_t[], PetscScalar *a[])
3739d71ae5a4SJacob Faibussowitsch {
37402f856554SMatthew G. Knepley   DM              plex, plexA = NULL;
3741a6e0b375SMatthew G. Knepley   DMEnclosureType encAux;
37422f856554SMatthew G. Knepley   PetscSection    section, sectionAux;
37432f856554SMatthew G. Knepley   PetscDS         prob;
37442f856554SMatthew G. Knepley   const PetscInt *cells;
37452f856554SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, totDim, totDimAux, c;
37462f856554SMatthew G. Knepley 
37472f856554SMatthew G. Knepley   PetscFunctionBegin;
37482f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3749064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
3750ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4);
3751ad540459SPierre Jolivet   if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5);
37524f572ea9SToby Isaac   PetscAssertPointer(u, 6);
37534f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
37544f572ea9SToby Isaac   PetscAssertPointer(a, 8);
37559566063dSJacob Faibussowitsch   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
37569566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
37579566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
375807218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
37599566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
37602f856554SMatthew G. Knepley   if (locA) {
37612f856554SMatthew G. Knepley     DM      dmAux;
37622f856554SMatthew G. Knepley     PetscDS probAux;
37632f856554SMatthew G. Knepley 
37649566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
37659566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
37669566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
37679566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
37689566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
37699566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
37702f856554SMatthew G. Knepley   }
37712f856554SMatthew G. Knepley   numCells = cEnd - cStart;
37729566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
37739371c9d4SSatish Balay   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
3774ad540459SPierre Jolivet   else *u_t = NULL;
37759371c9d4SSatish Balay   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
3776ad540459SPierre Jolivet   else *a = NULL;
37772f856554SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
37782f856554SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
37792f856554SMatthew G. Knepley     const PetscInt cind = c - cStart;
37802f856554SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a;
37812f856554SMatthew G. Knepley     PetscInt       i;
37822f856554SMatthew G. Knepley 
37839566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x));
37842f856554SMatthew G. Knepley     for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i];
37859566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x));
37862f856554SMatthew G. Knepley     if (locX_t) {
37879566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
37882f856554SMatthew G. Knepley       for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i];
37899566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
37902f856554SMatthew G. Knepley     }
37912f856554SMatthew G. Knepley     if (locA) {
37922f856554SMatthew G. Knepley       PetscInt subcell;
37939566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
37949566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x));
37952f856554SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i];
37969566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x));
37972f856554SMatthew G. Knepley     }
37982f856554SMatthew G. Knepley   }
37999566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
38009566063dSJacob Faibussowitsch   if (locA) PetscCall(DMDestroy(&plexA));
38019566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
38023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38032f856554SMatthew G. Knepley }
38042f856554SMatthew G. Knepley 
38052f856554SMatthew G. Knepley /*@C
38062f856554SMatthew G. Knepley   DMPlexRestoreCellFields - Restore the field values values for a chunk of cells
38072f856554SMatthew G. Knepley 
38082f856554SMatthew G. Knepley   Input Parameters:
3809a1cb98faSBarry Smith + dm     - The `DM`
38102f856554SMatthew G. Knepley . cellIS - The cells to include
38112f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
3812ce78bad3SBarry Smith . locX_t - A local vector with solution field time derivatives, or `NULL`
3813ce78bad3SBarry Smith - locA   - A local vector with auxiliary fields, or `NULL`
38142f856554SMatthew G. Knepley 
38152f856554SMatthew G. Knepley   Output Parameters:
38162f856554SMatthew G. Knepley + u   - The field coefficients
38172f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
38182f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
38192f856554SMatthew G. Knepley 
38202f856554SMatthew G. Knepley   Level: developer
38212f856554SMatthew G. Knepley 
38221cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
38232f856554SMatthew G. Knepley @*/
3824ce78bad3SBarry Smith PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, PeOp Vec locX_t, PeOp Vec locA, PetscScalar *u[], PetscScalar *u_t[], PetscScalar *a[])
3825d71ae5a4SJacob Faibussowitsch {
38262f856554SMatthew G. Knepley   PetscFunctionBegin;
38279566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u));
38289566063dSJacob Faibussowitsch   if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t));
38299566063dSJacob Faibussowitsch   if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a));
38303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38312f856554SMatthew G. Knepley }
38322f856554SMatthew G. Knepley 
3833a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3834d71ae5a4SJacob Faibussowitsch {
383507218a29SMatthew G. Knepley   DM              plex, plexA = NULL;
383607218a29SMatthew G. Knepley   DMEnclosureType encAux;
383707218a29SMatthew G. Knepley   PetscSection    section, sectionAux;
383807218a29SMatthew G. Knepley   PetscDS         ds, dsIn;
38396528b96dSMatthew G. Knepley   const PetscInt *cells;
384007218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f;
38416528b96dSMatthew G. Knepley 
38426528b96dSMatthew G. Knepley   PetscFunctionBegin;
384307218a29SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
384407218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2);
384507218a29SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
384607218a29SMatthew G. Knepley   if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); }
384707218a29SMatthew G. Knepley   if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); }
38484f572ea9SToby Isaac   PetscAssertPointer(u, 6);
38494f572ea9SToby Isaac   PetscAssertPointer(u_t, 7);
38504f572ea9SToby Isaac   PetscAssertPointer(a, 8);
385107218a29SMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
385207218a29SMatthew G. Knepley   numCells = cEnd - cStart;
385307218a29SMatthew G. Knepley   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
385407218a29SMatthew G. Knepley   PetscCall(DMGetLocalSection(dm, &section));
385507218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
385607218a29SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(dsIn, &Nf));
385707218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDim));
385807218a29SMatthew G. Knepley   if (locA) {
385907218a29SMatthew G. Knepley     DM      dmAux;
386007218a29SMatthew G. Knepley     PetscDS probAux;
386107218a29SMatthew G. Knepley 
386207218a29SMatthew G. Knepley     PetscCall(VecGetDM(locA, &dmAux));
386307218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
386407218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
386507218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
386607218a29SMatthew G. Knepley     PetscCall(DMGetDS(dmAux, &probAux));
386707218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
386807218a29SMatthew G. Knepley   }
386907218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
387007218a29SMatthew G. Knepley   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
387107218a29SMatthew G. Knepley   else {
387207218a29SMatthew G. Knepley     *u_t = NULL;
387307218a29SMatthew G. Knepley   }
387407218a29SMatthew G. Knepley   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
387507218a29SMatthew G. Knepley   else {
387607218a29SMatthew G. Knepley     *a = NULL;
387707218a29SMatthew G. Knepley   }
387807218a29SMatthew G. Knepley   // Loop over cohesive cells
387907218a29SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
388007218a29SMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
388107218a29SMatthew G. Knepley     const PetscInt  cind = c - cStart;
388274a0c561SMatthew G. Knepley     PetscScalar    *xf = NULL, *xc = NULL, *x = NULL, *xf_t = NULL, *xc_t = NULL;
38838e3a54c0SPierre Jolivet     PetscScalar    *ul = &(*u)[cind * totDim], *ul_t = PetscSafePointerPlusOffset(*u_t, cind * totDim);
388407218a29SMatthew G. Knepley     const PetscInt *cone, *ornt;
388507218a29SMatthew G. Knepley     PetscInt        Nx = 0, Nxf, s;
388607218a29SMatthew G. Knepley 
388707218a29SMatthew G. Knepley     PetscCall(DMPlexGetCone(dm, cell, &cone));
388807218a29SMatthew G. Knepley     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
388907218a29SMatthew G. Knepley     // Put in cohesive unknowns
389007218a29SMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf));
389174a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &xf_t));
389207218a29SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
389307218a29SMatthew G. Knepley       PetscInt  fdofIn, foff, foffIn;
389407218a29SMatthew G. Knepley       PetscBool cohesive;
389507218a29SMatthew G. Knepley 
389607218a29SMatthew G. Knepley       PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
389707218a29SMatthew G. Knepley       if (!cohesive) continue;
389807218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
389907218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff));
390007218a29SMatthew G. Knepley       PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
390107218a29SMatthew G. Knepley       for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i];
390274a0c561SMatthew G. Knepley       if (locX_t)
390374a0c561SMatthew G. Knepley         for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + i] = xf_t[foff + i];
390407218a29SMatthew G. Knepley       Nx += fdofIn;
390507218a29SMatthew G. Knepley     }
390607218a29SMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf));
390774a0c561SMatthew G. Knepley     if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &xf_t));
390807218a29SMatthew G. Knepley     // Loop over sides of surface
390907218a29SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
391007218a29SMatthew G. Knepley       const PetscInt *support;
391107218a29SMatthew G. Knepley       const PetscInt  face = cone[s];
3912989fa639SBrad Aagaard       PetscDS         dsC;
391307218a29SMatthew G. Knepley       PetscInt        ssize, ncell, Nxc;
391407218a29SMatthew G. Knepley 
391507218a29SMatthew G. Knepley       // I don't think I need the face to have 0 orientation in the hybrid cell
391607218a29SMatthew G. Knepley       //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]);
391707218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupport(dm, face, &support));
391807218a29SMatthew G. Knepley       PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
391907218a29SMatthew G. Knepley       if (support[0] == cell) ncell = support[1];
392007218a29SMatthew G. Knepley       else if (support[1] == cell) ncell = support[0];
392107218a29SMatthew G. Knepley       else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
392207218a29SMatthew G. Knepley       // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields
3923989fa639SBrad Aagaard       PetscCall(DMGetCellDS(dm, ncell, &dsC, NULL));
392407218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc));
392574a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, ncell, NULL, &xc_t));
392607218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
3927989fa639SBrad Aagaard         PetscInt  fdofIn, foffIn, foff;
392807218a29SMatthew G. Knepley         PetscBool cohesive;
392907218a29SMatthew G. Knepley 
393007218a29SMatthew G. Knepley         PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive));
393107218a29SMatthew G. Knepley         if (cohesive) continue;
393207218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn));
3933989fa639SBrad Aagaard         PetscCall(PetscDSGetFieldOffset(dsC, f, &foff));
393407218a29SMatthew G. Knepley         PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn));
3935989fa639SBrad Aagaard         for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foff + i];
393674a0c561SMatthew G. Knepley         if (locX_t)
3937989fa639SBrad Aagaard           for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + s * fdofIn + i] = xc_t[foff + i];
393807218a29SMatthew G. Knepley         Nx += fdofIn;
393907218a29SMatthew G. Knepley       }
394007218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc));
394174a0c561SMatthew G. Knepley       if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, ncell, NULL, &xc_t));
394207218a29SMatthew G. Knepley     }
394307218a29SMatthew G. Knepley     PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim);
394407218a29SMatthew G. Knepley 
394507218a29SMatthew G. Knepley     if (locA) {
394607218a29SMatthew G. Knepley       PetscScalar *al = &(*a)[cind * totDimAux];
394707218a29SMatthew G. Knepley       PetscInt     subcell;
394807218a29SMatthew G. Knepley 
394907218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
395007218a29SMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
395107218a29SMatthew G. Knepley       PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux);
395207218a29SMatthew G. Knepley       for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i];
395307218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x));
395407218a29SMatthew G. Knepley     }
395507218a29SMatthew G. Knepley   }
395607218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plex));
395707218a29SMatthew G. Knepley   PetscCall(DMDestroy(&plexA));
395807218a29SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
395907218a29SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
396007218a29SMatthew G. Knepley }
396107218a29SMatthew G. Knepley 
396207218a29SMatthew G. Knepley /*
39633e2b0218SMatthew G. Knepley   DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface
396407218a29SMatthew G. Knepley 
396507218a29SMatthew G. Knepley   Input Parameters:
396607218a29SMatthew G. Knepley + dm      - The full domain DM
396707218a29SMatthew G. Knepley . dmX     - An array of DM for the field, say an auxiliary DM, indexed by s
396807218a29SMatthew G. Knepley . dsX     - An array of PetscDS for the field, indexed by s
396907218a29SMatthew G. Knepley . cellIS  - The interface cells for which we want values
397007218a29SMatthew G. Knepley . locX    - An array of local vectors with the field values, indexed by s
397107218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face
397207218a29SMatthew G. Knepley 
397307218a29SMatthew G. Knepley   Output Parameter:
397407218a29SMatthew G. Knepley . x       - An array of field values, indexed by s
397507218a29SMatthew G. Knepley 
397607218a29SMatthew G. Knepley   Note:
397776fbde31SPierre Jolivet   The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`.
397807218a29SMatthew G. Knepley 
397907218a29SMatthew G. Knepley   Level: advanced
398007218a29SMatthew G. Knepley 
398176fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()`
398207218a29SMatthew G. Knepley */
398307218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
398407218a29SMatthew G. Knepley {
398507218a29SMatthew G. Knepley   DM              plexX[2];
398607218a29SMatthew G. Knepley   DMEnclosureType encX[2];
398707218a29SMatthew G. Knepley   PetscSection    sectionX[2];
398807218a29SMatthew G. Knepley   const PetscInt *cells;
398907218a29SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, s, totDimX[2];
399007218a29SMatthew G. Knepley 
399107218a29SMatthew G. Knepley   PetscFunctionBegin;
39924f572ea9SToby Isaac   PetscAssertPointer(locX, 5);
399307218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
39944f572ea9SToby Isaac   PetscAssertPointer(dmX, 2);
39954f572ea9SToby Isaac   PetscAssertPointer(dsX, 3);
399607218a29SMatthew G. Knepley   PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4);
39974f572ea9SToby Isaac   PetscAssertPointer(x, 7);
39989566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
39996528b96dSMatthew G. Knepley   numCells = cEnd - cStart;
4000148442b3SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
400107218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2);
400207218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3);
400307218a29SMatthew G. Knepley     PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5);
400407218a29SMatthew G. Knepley     PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE));
400507218a29SMatthew G. Knepley     PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s]));
400607218a29SMatthew G. Knepley     PetscCall(DMGetLocalSection(dmX[s], &sectionX[s]));
400707218a29SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s]));
400807218a29SMatthew G. Knepley     PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s]));
400904c51a94SMatthew G. Knepley   }
4010148442b3SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
40116528b96dSMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
40126528b96dSMatthew G. Knepley     const PetscInt  cind = c - cStart;
40136528b96dSMatthew G. Knepley     const PetscInt *cone, *ornt;
40146528b96dSMatthew G. Knepley 
40159566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
40169566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
401707218a29SMatthew G. Knepley     //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]);
4018148442b3SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
401907218a29SMatthew G. Knepley       const PetscInt tdX     = totDimX[s];
402007218a29SMatthew G. Knepley       PetscScalar   *closure = NULL, *xl = &x[s][cind * tdX];
402107218a29SMatthew G. Knepley       PetscInt       face = cone[s], point = face, subpoint, Nx, i;
402207218a29SMatthew G. Knepley 
402307218a29SMatthew G. Knepley       if (useCell) {
40245fedec97SMatthew G. Knepley         const PetscInt *support;
402507218a29SMatthew G. Knepley         PetscInt        ssize;
40266528b96dSMatthew G. Knepley 
402707218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, face, &support));
402807218a29SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, face, &ssize));
402907218a29SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize);
403007218a29SMatthew G. Knepley         if (support[0] == cell) point = support[1];
403107218a29SMatthew G. Knepley         else if (support[1] == cell) point = support[0];
403207218a29SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell);
403307218a29SMatthew G. Knepley       }
403407218a29SMatthew G. Knepley       PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint));
4035e8e188d2SZach Atkins       PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], PETSC_FALSE, locX[s], subpoint, ornt[s], &Nx, &closure));
403607218a29SMatthew G. Knepley       PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX);
403707218a29SMatthew G. Knepley       for (i = 0; i < Nx; ++i) xl[i] = closure[i];
403807218a29SMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure));
40396528b96dSMatthew G. Knepley     }
40406528b96dSMatthew G. Knepley   }
404107218a29SMatthew G. Knepley   for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s]));
40429566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
40433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
40446528b96dSMatthew G. Knepley }
40456528b96dSMatthew G. Knepley 
404607218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[])
4047d71ae5a4SJacob Faibussowitsch {
40486528b96dSMatthew G. Knepley   PetscFunctionBegin;
404907218a29SMatthew G. Knepley   if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS);
405007218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0]));
405107218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1]));
40523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
40536528b96dSMatthew G. Knepley }
40546528b96dSMatthew G. Knepley 
40552f856554SMatthew G. Knepley /*@C
40562f856554SMatthew G. Knepley   DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces
40572f856554SMatthew G. Knepley 
40582f856554SMatthew G. Knepley   Input Parameters:
4059a1cb98faSBarry Smith + dm           - The `DM`
40602f856554SMatthew G. Knepley . fStart       - The first face to include
40612f856554SMatthew G. Knepley . fEnd         - The first face to exclude
40622f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
4063ce78bad3SBarry Smith . locX_t       - A local vector with solution field time derivatives, or `NULL`
40642f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
40652f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
4066ce78bad3SBarry Smith - locGrad      - A local vector with field gradients, or `NULL`
40672f856554SMatthew G. Knepley 
40682f856554SMatthew G. Knepley   Output Parameters:
40692f856554SMatthew G. Knepley + Nface - The number of faces with field values
40702f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
40712f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
40722f856554SMatthew G. Knepley 
40732f856554SMatthew G. Knepley   Level: developer
40742f856554SMatthew G. Knepley 
40751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
40762f856554SMatthew G. Knepley @*/
4077ce78bad3SBarry Smith PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, PeOp Vec locX_t, Vec faceGeometry, Vec cellGeometry, PeOp Vec locGrad, PetscInt *Nface, PetscScalar *uL[], PetscScalar *uR[])
4078d71ae5a4SJacob Faibussowitsch {
40792f856554SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad = NULL;
40802f856554SMatthew G. Knepley   PetscSection       section;
40812f856554SMatthew G. Knepley   PetscDS            prob;
40822f856554SMatthew G. Knepley   DMLabel            ghostLabel;
40832f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *x, *lgrad;
40842f856554SMatthew G. Knepley   PetscBool         *isFE;
40852f856554SMatthew G. Knepley   PetscInt           dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face;
40862f856554SMatthew G. Knepley 
40872f856554SMatthew G. Knepley   PetscFunctionBegin;
40882f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
40892f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
4090ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);
40912f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6);
40922f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7);
4093ad540459SPierre Jolivet   if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);
40944f572ea9SToby Isaac   PetscAssertPointer(uL, 10);
40954f572ea9SToby Isaac   PetscAssertPointer(uR, 11);
40969566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
40979566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
40989566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
40999566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
41009566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalComponents(prob, &Nc));
41019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &isFE));
41022f856554SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
41032f856554SMatthew G. Knepley     PetscObject  obj;
41042f856554SMatthew G. Knepley     PetscClassId id;
41052f856554SMatthew G. Knepley 
41069566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
41079566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
41089371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
41099371c9d4SSatish Balay       isFE[f] = PETSC_TRUE;
41109371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
41119371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
41129371c9d4SSatish Balay     } else {
41139371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
41149371c9d4SSatish Balay     }
41152f856554SMatthew G. Knepley   }
41169566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
41179566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(locX, &x));
41189566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
41199566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
41209566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
41219566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
41222f856554SMatthew G. Knepley   if (locGrad) {
41239566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locGrad, &dmGrad));
41249566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
41252f856554SMatthew G. Knepley   }
41269566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL));
41279566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR));
41282f856554SMatthew G. Knepley   /* Right now just eat the extra work for FE (could make a cell loop) */
41292f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
41302f856554SMatthew G. Knepley     const PetscInt  *cells;
41312f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
41322f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
41332f856554SMatthew G. Knepley     PetscScalar     *xL, *xR, *gL, *gR;
41342f856554SMatthew G. Knepley     PetscScalar     *uLl = *uL, *uRl = *uR;
41352f856554SMatthew G. Knepley     PetscInt         ghost, nsupp, nchild;
41362f856554SMatthew G. Knepley 
41379566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
41389566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
41399566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
41402f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
41419566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
41429566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
41439566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
41449566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
41452f856554SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
41462f856554SMatthew G. Knepley       PetscInt off;
41472f856554SMatthew G. Knepley 
41489566063dSJacob Faibussowitsch       PetscCall(PetscDSGetComponentOffset(prob, f, &off));
41492f856554SMatthew G. Knepley       if (isFE[f]) {
41502f856554SMatthew G. Knepley         const PetscInt *cone;
41512f856554SMatthew G. Knepley         PetscInt        comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d;
41522f856554SMatthew G. Knepley 
41532f856554SMatthew G. Knepley         xL = xR = NULL;
41549566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
4155835f2295SStefano Zampini         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, &xL));
4156835f2295SStefano Zampini         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, &xR));
41579566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[0], &cone));
41589566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL));
41599371c9d4SSatish Balay         for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL)
41609371c9d4SSatish Balay           if (cone[faceLocL] == face) break;
41619566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[1], &cone));
41629566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR));
41639371c9d4SSatish Balay         for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR)
41649371c9d4SSatish Balay           if (cone[faceLocR] == face) break;
41651dca8a05SBarry Smith         PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]);
41662f856554SMatthew G. Knepley         /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */
41672f856554SMatthew G. Knepley         /* TODO: this is a hack that might not be right for nonconforming */
41682f856554SMatthew G. Knepley         if (faceLocL < coneSizeL) {
41699566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off]));
41709566063dSJacob Faibussowitsch           if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
41712f856554SMatthew G. Knepley           else {
41729371c9d4SSatish Balay             for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d];
41739371c9d4SSatish Balay           }
41749371c9d4SSatish Balay         } else {
41759566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
41769566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
41772f856554SMatthew G. Knepley           for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d];
41782f856554SMatthew G. Knepley         }
4179835f2295SStefano Zampini         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, &xL));
4180835f2295SStefano Zampini         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, &xR));
41812f856554SMatthew G. Knepley       } else {
41822f856554SMatthew G. Knepley         PetscFV  fv;
41832f856554SMatthew G. Knepley         PetscInt numComp, c;
41842f856554SMatthew G. Knepley 
41859566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv));
41869566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &numComp));
41879566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL));
41889566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR));
41892f856554SMatthew G. Knepley         if (dmGrad) {
41902f856554SMatthew G. Knepley           PetscReal dxL[3], dxR[3];
41912f856554SMatthew G. Knepley 
41929566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL));
41939566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR));
41942f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL);
41952f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR);
41962f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
41972f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL);
41982f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR);
41992f856554SMatthew G. Knepley           }
42002f856554SMatthew G. Knepley         } else {
42012f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
42022f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c];
42032f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c];
42042f856554SMatthew G. Knepley           }
42052f856554SMatthew G. Knepley         }
42062f856554SMatthew G. Knepley       }
42072f856554SMatthew G. Knepley     }
42082f856554SMatthew G. Knepley     ++iface;
42092f856554SMatthew G. Knepley   }
42102f856554SMatthew G. Knepley   *Nface = iface;
42119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(locX, &x));
42129566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
42139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
421448a46eb9SPierre Jolivet   if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
42159566063dSJacob Faibussowitsch   PetscCall(PetscFree(isFE));
42163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42172f856554SMatthew G. Knepley }
42182f856554SMatthew G. Knepley 
42192f856554SMatthew G. Knepley /*@C
42202f856554SMatthew G. Knepley   DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces
42212f856554SMatthew G. Knepley 
42222f856554SMatthew G. Knepley   Input Parameters:
4223a1cb98faSBarry Smith + dm           - The `DM`
42242f856554SMatthew G. Knepley . fStart       - The first face to include
42252f856554SMatthew G. Knepley . fEnd         - The first face to exclude
42262f856554SMatthew G. Knepley . locX         - A local vector with the solution fields
4227ce78bad3SBarry Smith . locX_t       - A local vector with solution field time derivatives, or `NULL`
42282f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
42292f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
4230ce78bad3SBarry Smith - locGrad      - A local vector with field gradients, or `NULL`
42312f856554SMatthew G. Knepley 
42322f856554SMatthew G. Knepley   Output Parameters:
42332f856554SMatthew G. Knepley + Nface - The number of faces with field values
42342f856554SMatthew G. Knepley . uL    - The field values at the left side of the face
42352f856554SMatthew G. Knepley - uR    - The field values at the right side of the face
42362f856554SMatthew G. Knepley 
42372f856554SMatthew G. Knepley   Level: developer
42382f856554SMatthew G. Knepley 
42391cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
42402f856554SMatthew G. Knepley @*/
4241ce78bad3SBarry Smith PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, PeOp Vec locX_t, Vec faceGeometry, Vec cellGeometry, PeOp Vec locGrad, PetscInt *Nface, PetscScalar *uL[], PetscScalar *uR[])
4242d71ae5a4SJacob Faibussowitsch {
42432f856554SMatthew G. Knepley   PetscFunctionBegin;
42449566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL));
42459566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR));
42463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42472f856554SMatthew G. Knepley }
42482f856554SMatthew G. Knepley 
42492f856554SMatthew G. Knepley /*@C
42502f856554SMatthew G. Knepley   DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces
42512f856554SMatthew G. Knepley 
42522f856554SMatthew G. Knepley   Input Parameters:
4253a1cb98faSBarry Smith + dm           - The `DM`
42542f856554SMatthew G. Knepley . fStart       - The first face to include
42552f856554SMatthew G. Knepley . fEnd         - The first face to exclude
42562f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
42572f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
42582f856554SMatthew G. Knepley 
42592f856554SMatthew G. Knepley   Output Parameters:
42602f856554SMatthew G. Knepley + Nface - The number of faces with field values
4261ce78bad3SBarry Smith . fgeom - The face centroid and normals
4262ce78bad3SBarry Smith - vol   - The cell volumes
42632f856554SMatthew G. Knepley 
42642f856554SMatthew G. Knepley   Level: developer
42652f856554SMatthew G. Knepley 
42661cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()`
42672f856554SMatthew G. Knepley @*/
4268ce78bad3SBarry Smith PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom *fgeom[], PetscReal *vol[])
4269d71ae5a4SJacob Faibussowitsch {
42702f856554SMatthew G. Knepley   DM                 dmFace, dmCell;
42712f856554SMatthew G. Knepley   DMLabel            ghostLabel;
42722f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom;
42732f856554SMatthew G. Knepley   PetscInt           dim, numFaces = fEnd - fStart, iface, face;
42742f856554SMatthew G. Knepley 
42752f856554SMatthew G. Knepley   PetscFunctionBegin;
42762f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
42772f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4);
42782f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5);
42794f572ea9SToby Isaac   PetscAssertPointer(fgeom, 7);
42804f572ea9SToby Isaac   PetscAssertPointer(vol, 8);
42819566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
42829566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
42839566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
42849566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
42859566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
42869566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
42879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFaces, fgeom));
42889566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol));
42892f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
42902f856554SMatthew G. Knepley     const PetscInt  *cells;
42912f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
42922f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
42932f856554SMatthew G. Knepley     PetscFVFaceGeom *fgeoml = *fgeom;
42942f856554SMatthew G. Knepley     PetscReal       *voll   = *vol;
42952f856554SMatthew G. Knepley     PetscInt         ghost, d, nchild, nsupp;
42962f856554SMatthew G. Knepley 
42979566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
42989566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
42999566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
43002f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
43019566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
43029566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
43039566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
43049566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
43052f856554SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
43062f856554SMatthew G. Knepley       fgeoml[iface].centroid[d] = fg->centroid[d];
43072f856554SMatthew G. Knepley       fgeoml[iface].normal[d]   = fg->normal[d];
43082f856554SMatthew G. Knepley     }
43092f856554SMatthew G. Knepley     voll[iface * 2 + 0] = cgL->volume;
43102f856554SMatthew G. Knepley     voll[iface * 2 + 1] = cgR->volume;
43112f856554SMatthew G. Knepley     ++iface;
43122f856554SMatthew G. Knepley   }
43132f856554SMatthew G. Knepley   *Nface = iface;
43149566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
43159566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
43163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43172f856554SMatthew G. Knepley }
43182f856554SMatthew G. Knepley 
43192f856554SMatthew G. Knepley /*@C
43202f856554SMatthew G. Knepley   DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces
43212f856554SMatthew G. Knepley 
43222f856554SMatthew G. Knepley   Input Parameters:
4323a1cb98faSBarry Smith + dm           - The `DM`
43242f856554SMatthew G. Knepley . fStart       - The first face to include
43252f856554SMatthew G. Knepley . fEnd         - The first face to exclude
43262f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
43272f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
43282f856554SMatthew G. Knepley 
43292f856554SMatthew G. Knepley   Output Parameters:
43302f856554SMatthew G. Knepley + Nface - The number of faces with field values
4331ce78bad3SBarry Smith . fgeom - The face centroid and normals
4332ce78bad3SBarry Smith - vol   - The cell volumes
43332f856554SMatthew G. Knepley 
43342f856554SMatthew G. Knepley   Level: developer
43352f856554SMatthew G. Knepley 
43361cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()`
43372f856554SMatthew G. Knepley @*/
4338ce78bad3SBarry Smith PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom *fgeom[], PetscReal *vol[])
4339d71ae5a4SJacob Faibussowitsch {
43402f856554SMatthew G. Knepley   PetscFunctionBegin;
43419566063dSJacob Faibussowitsch   PetscCall(PetscFree(*fgeom));
43429566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol));
43433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43442f856554SMatthew G. Knepley }
43452f856554SMatthew G. Knepley 
4346ac9d17c7SMatthew G. Knepley PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscFEGeomMode mode, PetscFEGeom **geom)
4347d71ae5a4SJacob Faibussowitsch {
4348a1cf66bbSMatthew G. Knepley   char           composeStr[33] = {0};
4349a1cf66bbSMatthew G. Knepley   PetscObjectId  id;
4350a1cf66bbSMatthew G. Knepley   PetscContainer container;
4351a1cf66bbSMatthew G. Knepley 
4352a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
43539566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
435463a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id));
43559566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
4356a1cf66bbSMatthew G. Knepley   if (container) {
43579566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
4358a1cf66bbSMatthew G. Knepley   } else {
4359ac9d17c7SMatthew G. Knepley     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, mode, geom));
43609566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
43619566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
436249abdd8aSBarry Smith     PetscCall(PetscContainerSetCtxDestroy(container, PetscContainerCtxDestroy_PetscFEGeom));
43639566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
43649566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
4365a1cf66bbSMatthew G. Knepley   }
43663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4367a1cf66bbSMatthew G. Knepley }
4368a1cf66bbSMatthew G. Knepley 
4369d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
4370d71ae5a4SJacob Faibussowitsch {
4371a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
4372a1cf66bbSMatthew G. Knepley   *geom = NULL;
43733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4374a1cf66bbSMatthew G. Knepley }
4375a1cf66bbSMatthew G. Knepley 
4376d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user)
4377d71ae5a4SJacob Faibussowitsch {
437892d50984SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
437992d50984SMatthew G. Knepley   const char     *name       = "Residual";
438092d50984SMatthew G. Knepley   DM              dmAux      = NULL;
438192d50984SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
438292d50984SMatthew G. Knepley   PetscDS         prob       = NULL;
438392d50984SMatthew G. Knepley   PetscDS         probAux    = NULL;
438492d50984SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
438592d50984SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
438692d50984SMatthew G. Knepley   DMField         coordField = NULL;
4387c0006e53SPatrick Farrell   Vec             locA;
4388c0006e53SPatrick Farrell   PetscScalar    *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL;
438992d50984SMatthew G. Knepley   IS              chunkIS;
439092d50984SMatthew G. Knepley   const PetscInt *cells;
439192d50984SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
4392364207b6SKarl Rupp   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd;
43931690c2aeSBarry Smith   PetscInt        maxDegree = PETSC_INT_MAX;
439406ad1575SMatthew G. Knepley   PetscFormKey    key;
439592d50984SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
439692d50984SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
439792d50984SMatthew G. Knepley 
439892d50984SMatthew G. Knepley   PetscFunctionBegin;
43999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
440092d50984SMatthew G. Knepley   /* FEM+FVM */
440192d50984SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
44029566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
44039566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
44049566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
44059566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
44069566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
440792d50984SMatthew G. Knepley   if (locA) {
44089566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
44099566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
44109566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
441192d50984SMatthew G. Knepley   }
441292d50984SMatthew G. Knepley   /* 2: Get geometric data */
441392d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
441492d50984SMatthew G. Knepley     PetscObject  obj;
441592d50984SMatthew G. Knepley     PetscClassId id;
441692d50984SMatthew G. Knepley     PetscBool    fimp;
441792d50984SMatthew G. Knepley 
44189566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(prob, f, &fimp));
441992d50984SMatthew G. Knepley     if (isImplicit != fimp) continue;
44209566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
44219566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4422ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
44235f80ce2aSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented");
442492d50984SMatthew G. Knepley   }
442592d50984SMatthew G. Knepley   if (useFEM) {
44269566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
44279566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
442892d50984SMatthew G. Knepley     if (maxDegree <= 1) {
44299566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
4430ac9d17c7SMatthew G. Knepley       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FEGEOM_BASIC, &affineGeom));
443192d50984SMatthew G. Knepley     } else {
44329566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
443392d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
443492d50984SMatthew G. Knepley         PetscObject  obj;
443592d50984SMatthew G. Knepley         PetscClassId id;
443692d50984SMatthew G. Knepley         PetscBool    fimp;
443792d50984SMatthew G. Knepley 
44389566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(prob, f, &fimp));
443992d50984SMatthew G. Knepley         if (isImplicit != fimp) continue;
44409566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
44419566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
444292d50984SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
444392d50984SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
444492d50984SMatthew G. Knepley 
44459566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
44469566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
4447ac9d17c7SMatthew G. Knepley           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FEGEOM_BASIC, &geoms[f]));
444892d50984SMatthew G. Knepley         }
444992d50984SMatthew G. Knepley       }
445092d50984SMatthew G. Knepley     }
445192d50984SMatthew G. Knepley   }
445292d50984SMatthew G. Knepley   /* Loop over chunks */
44539566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
44549566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
44559566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
445692d50984SMatthew G. Knepley   numCells      = cEnd - cStart;
445792d50984SMatthew G. Knepley   numChunks     = 1;
445892d50984SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
445992d50984SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
44606528b96dSMatthew G. Knepley   key.label     = NULL;
44616528b96dSMatthew G. Knepley   key.value     = 0;
446206ad1575SMatthew G. Knepley   key.part      = 0;
446392d50984SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
4464c0006e53SPatrick Farrell     PetscScalar     *elemVec, *fluxL = NULL, *fluxR = NULL;
4465c0006e53SPatrick Farrell     PetscReal       *vol   = NULL;
4466c0006e53SPatrick Farrell     PetscFVFaceGeom *fgeom = NULL;
446792d50984SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
4468c0006e53SPatrick Farrell     PetscInt         numFaces = 0;
446992d50984SMatthew G. Knepley 
447092d50984SMatthew G. Knepley     /* Extract field coefficients */
447192d50984SMatthew G. Knepley     if (useFEM) {
44729566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
44739566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
44749566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
44759566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
447692d50984SMatthew G. Knepley     }
447792d50984SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
447892d50984SMatthew G. Knepley     /* Loop over fields */
447992d50984SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
448092d50984SMatthew G. Knepley       PetscObject  obj;
448192d50984SMatthew G. Knepley       PetscClassId id;
448292d50984SMatthew G. Knepley       PetscBool    fimp;
448392d50984SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
448492d50984SMatthew G. Knepley 
44856528b96dSMatthew G. Knepley       key.field = f;
44869566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(prob, f, &fimp));
448792d50984SMatthew G. Knepley       if (isImplicit != fimp) continue;
44889566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
44899566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
449092d50984SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
449192d50984SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
449292d50984SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
449392d50984SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
449492d50984SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
449592d50984SMatthew G. Knepley         PetscInt        Nq, Nb;
449692d50984SMatthew G. Knepley 
44979566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
44989566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
44999566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
450092d50984SMatthew G. Knepley         blockSize = Nb;
450192d50984SMatthew G. Knepley         batchSize = numBlocks * blockSize;
45029566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
450392d50984SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
450492d50984SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
450592d50984SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
450692d50984SMatthew G. Knepley         offset    = numCells - Nr;
450792d50984SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
450892d50984SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
45099566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
45109566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
45119566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
45128e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
45139566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
451492d50984SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
451592d50984SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
451692d50984SMatthew G. Knepley 
451792d50984SMatthew G. Knepley         Ne = numFaces;
451892d50984SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
451992d50984SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
45209566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
452163a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
452292d50984SMatthew G. Knepley     }
452392d50984SMatthew G. Knepley     /* Loop over domain */
452492d50984SMatthew G. Knepley     if (useFEM) {
452592d50984SMatthew G. Knepley       /* Add elemVec to locX */
452692d50984SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
452792d50984SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
452892d50984SMatthew G. Knepley         const PetscInt cind = c - cStart;
452992d50984SMatthew G. Knepley 
45309566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
453192d50984SMatthew G. Knepley         if (ghostLabel) {
453292d50984SMatthew G. Knepley           PetscInt ghostVal;
453392d50984SMatthew G. Knepley 
45349566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
453592d50984SMatthew G. Knepley           if (ghostVal > 0) continue;
453692d50984SMatthew G. Knepley         }
45379566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
453892d50984SMatthew G. Knepley       }
453992d50984SMatthew G. Knepley     }
454092d50984SMatthew G. Knepley     /* Handle time derivative */
454192d50984SMatthew G. Knepley     if (locX_t) {
454292d50984SMatthew G. Knepley       PetscScalar *x_t, *fa;
454392d50984SMatthew G. Knepley 
45449566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
45459566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
454692d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
454792d50984SMatthew G. Knepley         PetscFV      fv;
454892d50984SMatthew G. Knepley         PetscObject  obj;
454992d50984SMatthew G. Knepley         PetscClassId id;
455092d50984SMatthew G. Knepley         PetscInt     pdim, d;
455192d50984SMatthew G. Knepley 
45529566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
45539566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
455492d50984SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
455592d50984SMatthew G. Knepley         fv = (PetscFV)obj;
45569566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
455792d50984SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
455892d50984SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
455992d50984SMatthew G. Knepley           PetscScalar   *u_t, *r;
456092d50984SMatthew G. Knepley 
456192d50984SMatthew G. Knepley           if (ghostLabel) {
456292d50984SMatthew G. Knepley             PetscInt ghostVal;
456392d50984SMatthew G. Knepley 
45649566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
456592d50984SMatthew G. Knepley             if (ghostVal > 0) continue;
456692d50984SMatthew G. Knepley           }
45679566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
45689566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
456992d50984SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
457092d50984SMatthew G. Knepley         }
457192d50984SMatthew G. Knepley       }
45729566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
45739566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
457492d50984SMatthew G. Knepley     }
457592d50984SMatthew G. Knepley     if (useFEM) {
45769566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
45779566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
457892d50984SMatthew G. Knepley     }
457992d50984SMatthew G. Knepley   }
45809566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
45819566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
4582754e4fbaSMatthew G. Knepley   /* TODO Could include boundary residual here (see DMPlexComputeResidualByKey) */
458392d50984SMatthew G. Knepley   if (useFEM) {
458492d50984SMatthew G. Knepley     if (maxDegree <= 1) {
45859566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
45869566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
458792d50984SMatthew G. Knepley     } else {
458892d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
45899566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
45909566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
459192d50984SMatthew G. Knepley       }
45929566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
459392d50984SMatthew G. Knepley     }
459492d50984SMatthew G. Knepley   }
45959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
45963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
459792d50984SMatthew G. Knepley }
459892d50984SMatthew G. Knepley 
4599a1cf66bbSMatthew G. Knepley /*
4600a1cf66bbSMatthew G. Knepley   We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac
4601a1cf66bbSMatthew G. Knepley 
4602a1cf66bbSMatthew G. Knepley   X   - The local solution vector
4603a5b23f4aSJose E. Roman   X_t - The local solution time derivative vector, or NULL
4604a1cf66bbSMatthew G. Knepley */
4605d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx)
4606d71ae5a4SJacob Faibussowitsch {
4607a1cf66bbSMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
4608a1cf66bbSMatthew G. Knepley   const char     *name = "Jacobian", *nameP = "JacobianPre";
4609a1cf66bbSMatthew G. Knepley   DM              dmAux = NULL;
4610a1cf66bbSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
4611a1cf66bbSMatthew G. Knepley   PetscSection    sectionAux = NULL;
4612a1cf66bbSMatthew G. Knepley   Vec             A;
4613a1cf66bbSMatthew G. Knepley   DMField         coordField;
4614a1cf66bbSMatthew G. Knepley   PetscFEGeom    *cgeomFEM;
4615a1cf66bbSMatthew G. Knepley   PetscQuadrature qGeom = NULL;
4616a1cf66bbSMatthew G. Knepley   Mat             J = Jac, JP = JacP;
4617a1cf66bbSMatthew G. Knepley   PetscScalar    *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL;
4618e432b41dSStefano Zampini   PetscBool       hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE;
4619a1cf66bbSMatthew G. Knepley   const PetscInt *cells;
462006ad1575SMatthew G. Knepley   PetscFormKey    key;
46219b2fc754SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0;
4622a1cf66bbSMatthew G. Knepley 
4623a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
46249566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
46259566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
46269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
46279566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
46289566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A));
46299a2a23afSMatthew G. Knepley   if (A) {
46309566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
46319566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
46329566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
4633a1cf66bbSMatthew G. Knepley   }
4634a1cf66bbSMatthew G. Knepley   /* Get flags */
46359566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
46369566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE));
4637a1cf66bbSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
4638a1cf66bbSMatthew G. Knepley     PetscObject  disc;
4639a1cf66bbSMatthew G. Knepley     PetscClassId id;
46409566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc));
46419566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(disc, &id));
46429371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
46439371c9d4SSatish Balay       isFE[fieldI] = PETSC_TRUE;
46449371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
46459371c9d4SSatish Balay       hasFV        = PETSC_TRUE;
46469371c9d4SSatish Balay       isFE[fieldI] = PETSC_FALSE;
46479371c9d4SSatish Balay     }
4648a1cf66bbSMatthew G. Knepley   }
46499566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
46509566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
46519566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
4652a1cf66bbSMatthew G. Knepley   assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE;
4653a1cf66bbSMatthew G. Knepley   hasDyn      = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
46549566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */
46559566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
46569566063dSJacob Faibussowitsch   if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
4657a1cf66bbSMatthew G. Knepley   /* Compute batch sizes */
4658a1cf66bbSMatthew G. Knepley   if (isFE[0]) {
4659a1cf66bbSMatthew G. Knepley     PetscFE         fe;
4660a1cf66bbSMatthew G. Knepley     PetscQuadrature q;
4661a1cf66bbSMatthew G. Knepley     PetscInt        numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb;
4662a1cf66bbSMatthew G. Knepley 
46639566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
46649566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &q));
46659566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL));
46669566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
46679566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
4668a1cf66bbSMatthew G. Knepley     blockSize = Nb * numQuadPoints;
4669a1cf66bbSMatthew G. Knepley     batchSize = numBlocks * blockSize;
4670a1cf66bbSMatthew G. Knepley     chunkSize = numBatches * batchSize;
4671a1cf66bbSMatthew G. Knepley     numChunks = numCells / chunkSize + numCells % chunkSize;
46729566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
4673a1cf66bbSMatthew G. Knepley   } else {
4674a1cf66bbSMatthew G. Knepley     chunkSize = numCells;
4675a1cf66bbSMatthew G. Knepley     numChunks = 1;
4676a1cf66bbSMatthew G. Knepley   }
4677a1cf66bbSMatthew G. Knepley   /* Get work space */
4678a1cf66bbSMatthew G. Knepley   wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize;
46799566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work));
46809566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(work, wsz));
4681a1cf66bbSMatthew G. Knepley   off      = 0;
4682a1cf66bbSMatthew G. Knepley   u        = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4683a1cf66bbSMatthew G. Knepley   u_t      = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4684a1cf66bbSMatthew G. Knepley   a        = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL;
4685a1cf66bbSMatthew G. Knepley   elemMat  = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4686a1cf66bbSMatthew G. Knepley   elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4687a1cf66bbSMatthew G. Knepley   elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
468863a3b9bcSJacob Faibussowitsch   PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz);
4689a1cf66bbSMatthew G. Knepley   /* Setup geometry */
46909566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
46919566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
46929566063dSJacob Faibussowitsch   if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
4693a1cf66bbSMatthew G. Knepley   if (!qGeom) {
4694a1cf66bbSMatthew G. Knepley     PetscFE fe;
4695a1cf66bbSMatthew G. Knepley 
46969566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
46979566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &qGeom));
46989566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)qGeom));
4699a1cf66bbSMatthew G. Knepley   }
4700ac9d17c7SMatthew G. Knepley   PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FEGEOM_BASIC, &cgeomFEM));
4701a1cf66bbSMatthew G. Knepley   /* Compute volume integrals */
47029566063dSJacob Faibussowitsch   if (assembleJac) PetscCall(MatZeroEntries(J));
47039566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(JP));
47046528b96dSMatthew G. Knepley   key.label = NULL;
47056528b96dSMatthew G. Knepley   key.value = 0;
470606ad1575SMatthew G. Knepley   key.part  = 0;
4707a1cf66bbSMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) {
4708a1cf66bbSMatthew G. Knepley     const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell);
4709a1cf66bbSMatthew G. Knepley     PetscInt       c;
4710a1cf66bbSMatthew G. Knepley 
4711a1cf66bbSMatthew G. Knepley     /* Extract values */
4712a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4713a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4714a1cf66bbSMatthew G. Knepley       PetscScalar   *x = NULL, *x_t = NULL;
4715a1cf66bbSMatthew G. Knepley       PetscInt       i;
4716a1cf66bbSMatthew G. Knepley 
4717a1cf66bbSMatthew G. Knepley       if (X) {
47189566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
4719a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
47209566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
4721a1cf66bbSMatthew G. Knepley       }
4722a1cf66bbSMatthew G. Knepley       if (X_t) {
47239566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
4724a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i];
47259566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
4726a1cf66bbSMatthew G. Knepley       }
4727a1cf66bbSMatthew G. Knepley       if (dmAux) {
47289566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x));
4729a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
47309566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x));
4731a1cf66bbSMatthew G. Knepley       }
4732a1cf66bbSMatthew G. Knepley     }
4733a1cf66bbSMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
4734a1cf66bbSMatthew G. Knepley       PetscFE fe;
47359566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
4736a1cf66bbSMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
47376528b96dSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
47389566063dSJacob Faibussowitsch         if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat));
47399566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP));
47409566063dSJacob Faibussowitsch         if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD));
4741a1cf66bbSMatthew G. Knepley       }
4742a1cf66bbSMatthew G. Knepley       /* For finite volume, add the identity */
4743a1cf66bbSMatthew G. Knepley       if (!isFE[fieldI]) {
4744a1cf66bbSMatthew G. Knepley         PetscFV  fv;
4745a1cf66bbSMatthew G. Knepley         PetscInt eOffset = 0, Nc, fc, foff;
4746a1cf66bbSMatthew G. Knepley 
47479566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff));
47489566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
47499566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &Nc));
4750a1cf66bbSMatthew G. Knepley         for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) {
4751a1cf66bbSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
4752a1cf66bbSMatthew G. Knepley             const PetscInt i = foff + fc;
4753ad540459SPierre Jolivet             if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
4754ad540459SPierre Jolivet             if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0;
4755a1cf66bbSMatthew G. Knepley           }
4756a1cf66bbSMatthew G. Knepley         }
4757a1cf66bbSMatthew G. Knepley       }
4758a1cf66bbSMatthew G. Knepley     }
4759a1cf66bbSMatthew G. Knepley     /*   Add contribution from X_t */
47609371c9d4SSatish Balay     if (hasDyn) {
47619371c9d4SSatish Balay       for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
47629371c9d4SSatish Balay     }
4763a1cf66bbSMatthew G. Knepley     /* Insert values into matrix */
4764a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4765a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4766a1cf66bbSMatthew G. Knepley       if (mesh->printFEM > 1) {
47679566063dSJacob Faibussowitsch         if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim]));
47689566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim]));
4769a1cf66bbSMatthew G. Knepley       }
4770e8e188d2SZach Atkins       if (assembleJac) PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4771e8e188d2SZach Atkins       PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4772a1cf66bbSMatthew G. Knepley     }
4773a1cf66bbSMatthew G. Knepley   }
4774a1cf66bbSMatthew G. Knepley   /* Cleanup */
47759566063dSJacob Faibussowitsch   PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
47769566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&qGeom));
47779566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
47789566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE));
47799566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work));
4780a1cf66bbSMatthew G. Knepley   /* Compute boundary integrals */
47819566063dSJacob Faibussowitsch   /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */
4782a1cf66bbSMatthew G. Knepley   /* Assemble matrix */
47839371c9d4SSatish Balay   if (assembleJac) {
47849371c9d4SSatish Balay     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
47859371c9d4SSatish Balay     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
47869371c9d4SSatish Balay   }
47879371c9d4SSatish Balay   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
47889371c9d4SSatish Balay   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
47899566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
47903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4791a1cf66bbSMatthew G. Knepley }
47923e9753d6SMatthew G. Knepley 
47934ee01570SBarry Smith /* FEM Assembly Function */
47943e9753d6SMatthew G. Knepley 
4795d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy)
4796d71ae5a4SJacob Faibussowitsch {
47973e9753d6SMatthew G. Knepley   PetscBool isPlex;
47983e9753d6SMatthew G. Knepley 
47993e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48009566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
48013e9753d6SMatthew G. Knepley   if (isPlex) {
48023e9753d6SMatthew G. Knepley     *plex = dm;
48039566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
48043e9753d6SMatthew G. Knepley   } else {
48059566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
48063e9753d6SMatthew G. Knepley     if (!*plex) {
48079566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
48089566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
48093e9753d6SMatthew G. Knepley     } else {
48109566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
48113e9753d6SMatthew G. Knepley     }
4812cbf8eb3cSStefano Zampini     if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex));
48133e9753d6SMatthew G. Knepley   }
48143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48153e9753d6SMatthew G. Knepley }
48163e9753d6SMatthew G. Knepley 
48173e9753d6SMatthew G. Knepley /*@
48183e9753d6SMatthew G. Knepley   DMPlexGetGeometryFVM - Return precomputed geometric data
48193e9753d6SMatthew G. Knepley 
482020f4b53cSBarry Smith   Collective
48213e9753d6SMatthew G. Knepley 
48223e9753d6SMatthew G. Knepley   Input Parameter:
4823a1cb98faSBarry Smith . dm - The `DM`
48243e9753d6SMatthew G. Knepley 
48253e9753d6SMatthew G. Knepley   Output Parameters:
48263e9753d6SMatthew G. Knepley + facegeom  - The values precomputed from face geometry
48273e9753d6SMatthew G. Knepley . cellgeom  - The values precomputed from cell geometry
4828ce78bad3SBarry Smith - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell, or `NULL` if not needed
48293e9753d6SMatthew G. Knepley 
48303e9753d6SMatthew G. Knepley   Level: developer
48313e9753d6SMatthew G. Knepley 
48321cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()`
48333e9753d6SMatthew G. Knepley @*/
4834ce78bad3SBarry Smith PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PeOp PetscReal *minRadius)
4835d71ae5a4SJacob Faibussowitsch {
48363e9753d6SMatthew G. Knepley   DM plex;
48373e9753d6SMatthew G. Knepley 
48383e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48393e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48409566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
48419566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL));
48429566063dSJacob Faibussowitsch   if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius));
48439566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
48443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48453e9753d6SMatthew G. Knepley }
48463e9753d6SMatthew G. Knepley 
48473e9753d6SMatthew G. Knepley /*@
48483e9753d6SMatthew G. Knepley   DMPlexGetGradientDM - Return gradient data layout
48493e9753d6SMatthew G. Knepley 
485020f4b53cSBarry Smith   Collective
48513e9753d6SMatthew G. Knepley 
48523e9753d6SMatthew G. Knepley   Input Parameters:
4853a1cb98faSBarry Smith + dm - The `DM`
485420f4b53cSBarry Smith - fv - The `PetscFV`
48553e9753d6SMatthew G. Knepley 
48563e9753d6SMatthew G. Knepley   Output Parameter:
48573e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values
48583e9753d6SMatthew G. Knepley 
48593e9753d6SMatthew G. Knepley   Level: developer
48603e9753d6SMatthew G. Knepley 
48611cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()`
48623e9753d6SMatthew G. Knepley @*/
4863d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad)
4864d71ae5a4SJacob Faibussowitsch {
48653e9753d6SMatthew G. Knepley   DM        plex;
48663e9753d6SMatthew G. Knepley   PetscBool computeGradients;
48673e9753d6SMatthew G. Knepley 
48683e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48693e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48703e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
48714f572ea9SToby Isaac   PetscAssertPointer(dmGrad, 3);
48729566063dSJacob Faibussowitsch   PetscCall(PetscFVGetComputeGradients(fv, &computeGradients));
48739371c9d4SSatish Balay   if (!computeGradients) {
48749371c9d4SSatish Balay     *dmGrad = NULL;
48753ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
48769371c9d4SSatish Balay   }
48779566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
48789566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad));
48799566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
48803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48813e9753d6SMatthew G. Knepley }
48823e9753d6SMatthew G. Knepley 
4883d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS)
4884d71ae5a4SJacob Faibussowitsch {
48853e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
48863e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL;
4887673019faSMatthew G. Knepley   const char     *name = "BdResidual";
48883e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
48893e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
48903e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
48913e9753d6SMatthew G. Knepley   Vec             locA = NULL;
48923e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL;
48933e9753d6SMatthew G. Knepley   PetscInt        totDim, totDimAux = 0;
48943e9753d6SMatthew G. Knepley 
48953e9753d6SMatthew G. Knepley   PetscFunctionBegin;
48969566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
48979566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
48989566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
48999566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
49009566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
49013e9753d6SMatthew G. Knepley   if (locA) {
49023e9753d6SMatthew G. Knepley     DM dmAux;
49033e9753d6SMatthew G. Knepley 
49049566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
49059566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
49069566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
49079566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
49089566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
49099566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
49103e9753d6SMatthew G. Knepley   }
49110c290148SMatthew G. Knepley   {
49123e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
49133e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
49143e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
49153e9753d6SMatthew G. Knepley     IS              pointIS;
49163e9753d6SMatthew G. Knepley     const PetscInt *points;
49173e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
49183e9753d6SMatthew G. Knepley 
49199566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS));
49200c290148SMatthew G. Knepley     if (!pointIS) goto end; /* No points with that id on this process */
49213e9753d6SMatthew G. Knepley     {
49223e9753d6SMatthew G. Knepley       IS isectIS;
49233e9753d6SMatthew G. Knepley 
49243e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
49259566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
49269566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
49273e9753d6SMatthew G. Knepley       pointIS = isectIS;
49283e9753d6SMatthew G. Knepley     }
49299566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
49309566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
493132603206SJames Wright     PetscCall(PetscMalloc4(numFaces * totDim, &u, (locX_t ? (size_t)numFaces * totDim : 0), &u_t, numFaces * totDim, &elemVec, (locA ? (size_t)numFaces * totDimAux : 0), &a));
49329566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
493348a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
49343e9753d6SMatthew G. Knepley     if (!qGeom) {
49353e9753d6SMatthew G. Knepley       PetscFE fe;
49363e9753d6SMatthew G. Knepley 
49379566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
49389566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
49399566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
49403e9753d6SMatthew G. Knepley     }
49419566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
4942ac9d17c7SMatthew G. Knepley     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_FEGEOM_BOUNDARY, &fgeom));
49433e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
4944f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
49453e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
4946f15274beSMatthew Knepley       PetscInt       i;
49473e9753d6SMatthew G. Knepley 
49489566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
49499566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
49503e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
49519566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
49523e9753d6SMatthew G. Knepley       if (locX_t) {
49539566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
49543e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
49559566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
49563e9753d6SMatthew G. Knepley       }
49573e9753d6SMatthew G. Knepley       if (locA) {
49583e9753d6SMatthew G. Knepley         PetscInt subp;
49593e9753d6SMatthew G. Knepley 
49609566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
49619566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
49623e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
49639566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
49643e9753d6SMatthew G. Knepley       }
49653e9753d6SMatthew G. Knepley     }
49669566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemVec, numFaces * totDim));
49673e9753d6SMatthew G. Knepley     {
49683e9753d6SMatthew G. Knepley       PetscFE      fe;
49693e9753d6SMatthew G. Knepley       PetscInt     Nb;
49703e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
49713e9753d6SMatthew G. Knepley       /* Conforming batches */
49723e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
49733e9753d6SMatthew G. Knepley       /* Remainder */
49743e9753d6SMatthew G. Knepley       PetscInt Nr, offset;
49753e9753d6SMatthew G. Knepley 
49769566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
49779566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
49789566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
49793e9753d6SMatthew G. Knepley       /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */
49803e9753d6SMatthew G. Knepley       blockSize = Nb;
49813e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
49829566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
49833e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
49843e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
49853e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
49863e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
49879566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
49889566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
49899566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
49909566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
49918e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim]));
49929566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
49933e9753d6SMatthew G. Knepley     }
49943e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
49953e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
49963e9753d6SMatthew G. Knepley 
4997673019faSMatthew G. Knepley       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, name, totDim, &elemVec[face * totDim]));
49989566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
49999566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES));
50003e9753d6SMatthew G. Knepley     }
50019566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
50029566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
50039566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
50049566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
50059566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemVec, a));
50063e9753d6SMatthew G. Knepley   }
50070c290148SMatthew G. Knepley end:
5008673019faSMatthew G. Knepley   if (mesh->printFEM) {
5009673019faSMatthew G. Knepley     PetscSection s;
5010673019faSMatthew G. Knepley     Vec          locFbc;
5011673019faSMatthew G. Knepley     PetscInt     pStart, pEnd, maxDof;
5012673019faSMatthew G. Knepley     PetscScalar *zeroes;
5013673019faSMatthew G. Knepley 
5014673019faSMatthew G. Knepley     PetscCall(DMGetLocalSection(dm, &s));
5015673019faSMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
5016673019faSMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
5017673019faSMatthew G. Knepley     PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
5018673019faSMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(s, &maxDof));
5019673019faSMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
5020673019faSMatthew G. Knepley     for (PetscInt p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, s, p, zeroes, INSERT_BC_VALUES));
5021673019faSMatthew G. Knepley     PetscCall(PetscFree(zeroes));
5022673019faSMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
5023673019faSMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
5024673019faSMatthew G. Knepley   }
50259566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
50269566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
50273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50283e9753d6SMatthew G. Knepley }
50293e9753d6SMatthew G. Knepley 
5030d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF)
5031d71ae5a4SJacob Faibussowitsch {
50323e9753d6SMatthew G. Knepley   DMField  coordField;
50333e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
50343e9753d6SMatthew G. Knepley   IS       facetIS;
50353e9753d6SMatthew G. Knepley   PetscInt dim;
50363e9753d6SMatthew G. Knepley 
50373e9753d6SMatthew G. Knepley   PetscFunctionBegin;
50389566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
50399566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
50409566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
50419566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
50429566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
50439566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
50443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50453e9753d6SMatthew G. Knepley }
50463e9753d6SMatthew G. Knepley 
5047a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5048d71ae5a4SJacob Faibussowitsch {
50493e9753d6SMatthew G. Knepley   PetscDS  prob;
50503e9753d6SMatthew G. Knepley   PetscInt numBd, bd;
50513e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
50523e9753d6SMatthew G. Knepley   IS       facetIS    = NULL;
50533e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
50543e9753d6SMatthew G. Knepley   PetscInt dim;
50553e9753d6SMatthew G. Knepley 
50563e9753d6SMatthew G. Knepley   PetscFunctionBegin;
50579566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
50589566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
50599566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
50609566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
50619566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
50623e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
506345480ffeSMatthew G. Knepley     PetscWeakForm           wf;
50643e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
50653e9753d6SMatthew G. Knepley     DMLabel                 label;
50663e9753d6SMatthew G. Knepley     const PetscInt         *values;
50670c290148SMatthew G. Knepley     PetscInt                field, numValues, v;
50683e9753d6SMatthew G. Knepley     PetscObject             obj;
50693e9753d6SMatthew G. Knepley     PetscClassId            id;
50700c290148SMatthew G. Knepley     PetscFormKey            key;
50713e9753d6SMatthew G. Knepley 
50729566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL));
50733d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
50749566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
50759566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
50763d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
50773e9753d6SMatthew G. Knepley     if (!facetIS) {
50783e9753d6SMatthew G. Knepley       DMLabel  depthLabel;
50793e9753d6SMatthew G. Knepley       PetscInt dim;
50803e9753d6SMatthew G. Knepley 
50819566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
50829566063dSJacob Faibussowitsch       PetscCall(DMGetDimension(dm, &dim));
50839566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
50843e9753d6SMatthew G. Knepley     }
50859566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
50860c290148SMatthew G. Knepley     for (v = 0; v < numValues; ++v) {
50870c290148SMatthew G. Knepley       key.label = label;
50880c290148SMatthew G. Knepley       key.value = values[v];
50890c290148SMatthew G. Knepley       key.field = field;
50900c290148SMatthew G. Knepley       key.part  = 0;
50919566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
50920c290148SMatthew G. Knepley     }
50933e9753d6SMatthew G. Knepley   }
50949566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
50953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50963e9753d6SMatthew G. Knepley }
50973e9753d6SMatthew G. Knepley 
5098754e4fbaSMatthew G. Knepley /*@
5099754e4fbaSMatthew G. Knepley   DMPlexComputeResidualByKey - Compute the local residual for terms matching the input key
5100754e4fbaSMatthew G. Knepley 
5101754e4fbaSMatthew G. Knepley   Collective
5102754e4fbaSMatthew G. Knepley 
5103754e4fbaSMatthew G. Knepley   Input Parameters:
5104754e4fbaSMatthew G. Knepley + dm     - The output `DM`
5105754e4fbaSMatthew G. Knepley . key    - The `PetscFormKey` indicating what should be integrated
5106754e4fbaSMatthew G. Knepley . cellIS - The `IS` giving a set of cells to integrate over
5107754e4fbaSMatthew G. Knepley . time   - The time, or `PETSC_MIN_REAL` to include implicit terms in a time-independent problems
5108754e4fbaSMatthew G. Knepley . locX   - The local solution
5109754e4fbaSMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems
5110754e4fbaSMatthew G. Knepley . t      - The time
5111754e4fbaSMatthew G. Knepley - user   - An optional user context, passed to the pointwise functions
5112754e4fbaSMatthew G. Knepley 
5113754e4fbaSMatthew G. Knepley   Output Parameter:
5114754e4fbaSMatthew G. Knepley . locF - The local residual
5115754e4fbaSMatthew G. Knepley 
5116754e4fbaSMatthew G. Knepley   Level: developer
5117754e4fbaSMatthew G. Knepley 
5118754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey`
5119754e4fbaSMatthew G. Knepley @*/
5120754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeResidualByKey(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5121d71ae5a4SJacob Faibussowitsch {
51223e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
51233e9753d6SMatthew G. Knepley   const char     *name       = "Residual";
51243e9753d6SMatthew G. Knepley   DM              dmAux      = NULL;
51253e9753d6SMatthew G. Knepley   DM              dmGrad     = NULL;
51263e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
51276528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
51286528b96dSMatthew G. Knepley   PetscDS         dsAux      = NULL;
51293e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
51303e9753d6SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
51313e9753d6SMatthew G. Knepley   PetscBool       useFVM     = PETSC_FALSE;
51323e9753d6SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
51333e9753d6SMatthew G. Knepley   PetscFV         fvm        = NULL;
51343e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
51355962854dSMatthew G. Knepley   Vec             locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
51363e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t, *a, *uL, *uR;
51373e9753d6SMatthew G. Knepley   IS              chunkIS;
51383e9753d6SMatthew G. Knepley   const PetscInt *cells;
51393e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
51403e9753d6SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd;
51411690c2aeSBarry Smith   PetscInt        maxDegree  = PETSC_INT_MAX;
51423e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
51433e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
51443e9753d6SMatthew G. Knepley 
51453e9753d6SMatthew G. Knepley   PetscFunctionBegin;
51469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
51473cc88e6aSStefano Zampini   if (!cellIS) goto end;
51483cc88e6aSStefano Zampini   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
51493cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
51503e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
51513e9753d6SMatthew G. Knepley   /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */
51523e9753d6SMatthew G. Knepley   /* FEM+FVM */
51539566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
51543e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
51559566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
51569566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
515707218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL));
51589566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
51599566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
51609566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
51613e9753d6SMatthew G. Knepley   if (locA) {
51623e9753d6SMatthew G. Knepley     PetscInt subcell;
51639566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
51641059d808SMatthew G. Knepley     PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell));
516507218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL));
51669566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
51673e9753d6SMatthew G. Knepley   }
51683e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
51693e9753d6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
51703e9753d6SMatthew G. Knepley     PetscObject  obj;
51713e9753d6SMatthew G. Knepley     PetscClassId id;
51723e9753d6SMatthew G. Knepley     PetscBool    fimp;
51733e9753d6SMatthew G. Knepley 
51749566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(ds, f, &fimp));
51753e9753d6SMatthew G. Knepley     if (isImplicit != fimp) continue;
51769566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(ds, f, &obj));
51779566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
5178ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
51799371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
51809371c9d4SSatish Balay       useFVM = PETSC_TRUE;
51819371c9d4SSatish Balay       fvm    = (PetscFV)obj;
51829371c9d4SSatish Balay     }
51833e9753d6SMatthew G. Knepley   }
51843e9753d6SMatthew G. Knepley   if (useFEM) {
51859566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
51869566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
51873e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
51889566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
5189ac9d17c7SMatthew G. Knepley       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FEGEOM_BASIC, &affineGeom));
51903e9753d6SMatthew G. Knepley     } else {
51919566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
51923e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
51933e9753d6SMatthew G. Knepley         PetscObject  obj;
51943e9753d6SMatthew G. Knepley         PetscClassId id;
51953e9753d6SMatthew G. Knepley         PetscBool    fimp;
51963e9753d6SMatthew G. Knepley 
51979566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(ds, f, &fimp));
51983e9753d6SMatthew G. Knepley         if (isImplicit != fimp) continue;
51999566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
52009566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
52013e9753d6SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
52023e9753d6SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
52033e9753d6SMatthew G. Knepley 
52049566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
52059566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
5206ac9d17c7SMatthew G. Knepley           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FEGEOM_BASIC, &geoms[f]));
52073e9753d6SMatthew G. Knepley         }
52083e9753d6SMatthew G. Knepley       }
52093e9753d6SMatthew G. Knepley     }
52103e9753d6SMatthew G. Knepley   }
52115962854dSMatthew G. Knepley   // Handle non-essential (e.g. outflow) boundary values
52123e9753d6SMatthew G. Knepley   if (useFVM) {
52135962854dSMatthew G. Knepley     PetscCall(DMPlexInsertBoundaryValuesFVM(dm, fvm, locX, time, &locGrad));
52149566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
52159566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad));
52163e9753d6SMatthew G. Knepley   }
52173e9753d6SMatthew G. Knepley   /* Loop over chunks */
52189566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
52193e9753d6SMatthew G. Knepley   numCells      = cEnd - cStart;
52203e9753d6SMatthew G. Knepley   numChunks     = 1;
52213e9753d6SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
52223e9753d6SMatthew G. Knepley   faceChunkSize = (fEnd - fStart) / numChunks;
52233e9753d6SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
52243e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
52253e9753d6SMatthew G. Knepley     PetscScalar     *elemVec, *fluxL, *fluxR;
52263e9753d6SMatthew G. Knepley     PetscReal       *vol;
52273e9753d6SMatthew G. Knepley     PetscFVFaceGeom *fgeom;
52283e9753d6SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
52293e9753d6SMatthew G. Knepley     PetscInt         fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face;
52303e9753d6SMatthew G. Knepley 
52313e9753d6SMatthew G. Knepley     /* Extract field coefficients */
52323e9753d6SMatthew G. Knepley     if (useFEM) {
52339566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
52349566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
52359566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
52369566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
52373e9753d6SMatthew G. Knepley     }
52383e9753d6SMatthew G. Knepley     if (useFVM) {
52399566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
52409566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
52419566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
52429566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
52439566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxL, numFaces * totDim));
52449566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxR, numFaces * totDim));
52453e9753d6SMatthew G. Knepley     }
52463e9753d6SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
52473e9753d6SMatthew G. Knepley     /* Loop over fields */
52483e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
52493e9753d6SMatthew G. Knepley       PetscObject  obj;
52503e9753d6SMatthew G. Knepley       PetscClassId id;
52513e9753d6SMatthew G. Knepley       PetscBool    fimp;
52523e9753d6SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
52533e9753d6SMatthew G. Knepley 
52546528b96dSMatthew G. Knepley       key.field = f;
52559566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(ds, f, &fimp));
52563e9753d6SMatthew G. Knepley       if (isImplicit != fimp) continue;
52579566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, &obj));
52589566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
52593e9753d6SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
52603e9753d6SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
52613e9753d6SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
52623e9753d6SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
52633e9753d6SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
52643e9753d6SMatthew G. Knepley         PetscInt        Nq, Nb;
52653e9753d6SMatthew G. Knepley 
52669566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
52679566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
52689566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
52693e9753d6SMatthew G. Knepley         blockSize = Nb;
52703e9753d6SMatthew G. Knepley         batchSize = numBlocks * blockSize;
52719566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
52723e9753d6SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
52733e9753d6SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
52743e9753d6SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
52753e9753d6SMatthew G. Knepley         offset    = numCells - Nr;
52763e9753d6SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
52773e9753d6SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
52789566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
52799566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec));
52809566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
52818e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim]));
52829566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
52833e9753d6SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
52843e9753d6SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
52853e9753d6SMatthew G. Knepley 
52863e9753d6SMatthew G. Knepley         Ne = numFaces;
52873e9753d6SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
52883e9753d6SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
52899566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
529063a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
52913e9753d6SMatthew G. Knepley     }
52923e9753d6SMatthew G. Knepley     /* Loop over domain */
52933e9753d6SMatthew G. Knepley     if (useFEM) {
52943e9753d6SMatthew G. Knepley       /* Add elemVec to locX */
52953e9753d6SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
52963e9753d6SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
52973e9753d6SMatthew G. Knepley         const PetscInt cind = c - cStart;
52983e9753d6SMatthew G. Knepley 
52999566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
53003e9753d6SMatthew G. Knepley         if (ghostLabel) {
53013e9753d6SMatthew G. Knepley           PetscInt ghostVal;
53023e9753d6SMatthew G. Knepley 
53039566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
53043e9753d6SMatthew G. Knepley           if (ghostVal > 0) continue;
53053e9753d6SMatthew G. Knepley         }
53069566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
53073e9753d6SMatthew G. Knepley       }
53083e9753d6SMatthew G. Knepley     }
53093e9753d6SMatthew G. Knepley     if (useFVM) {
53103e9753d6SMatthew G. Knepley       PetscScalar *fa;
53113e9753d6SMatthew G. Knepley       PetscInt     iface;
53123e9753d6SMatthew G. Knepley 
53139566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
53143e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
53153e9753d6SMatthew G. Knepley         PetscFV      fv;
53163e9753d6SMatthew G. Knepley         PetscObject  obj;
53173e9753d6SMatthew G. Knepley         PetscClassId id;
53185962854dSMatthew G. Knepley         PetscInt     cdim, foff, pdim;
53193e9753d6SMatthew G. Knepley 
53205962854dSMatthew G. Knepley         PetscCall(DMGetCoordinateDim(dm, &cdim));
53219566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
53229566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(ds, f, &foff));
53239566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
53243e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
53253e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
53269566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
53273e9753d6SMatthew G. Knepley         /* Accumulate fluxes to cells */
53283e9753d6SMatthew G. Knepley         for (face = fS, iface = 0; face < fE; ++face) {
53293e9753d6SMatthew G. Knepley           const PetscInt *scells;
53303e9753d6SMatthew G. Knepley           PetscScalar    *fL = NULL, *fR = NULL;
53313e9753d6SMatthew G. Knepley           PetscInt        ghost, d, nsupp, nchild;
53323e9753d6SMatthew G. Knepley 
53339566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
53349566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
53359566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
53363e9753d6SMatthew G. Knepley           if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
53379566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupport(dm, face, &scells));
53389566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost));
53399566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL));
53409566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost));
53419566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR));
53425962854dSMatthew G. Knepley           if (mesh->printFVM > 1) {
53435962854dSMatthew G. Knepley             PetscCall(DMPrintCellVectorReal(face, "Residual: normal", cdim, fgeom[iface].normal));
53445962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: left state", pdim, &uL[iface * totDim + foff]));
53455962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: right state", pdim, &uR[iface * totDim + foff]));
53465962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: left flux", pdim, &fluxL[iface * totDim + foff]));
53475962854dSMatthew G. Knepley             PetscCall(DMPrintCellVector(face, "Residual: right flux", pdim, &fluxR[iface * totDim + foff]));
53485962854dSMatthew G. Knepley           }
53493e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) {
53503e9753d6SMatthew G. Knepley             if (fL) fL[d] -= fluxL[iface * totDim + foff + d];
53513e9753d6SMatthew G. Knepley             if (fR) fR[d] += fluxR[iface * totDim + foff + d];
53523e9753d6SMatthew G. Knepley           }
53533e9753d6SMatthew G. Knepley           ++iface;
53543e9753d6SMatthew G. Knepley         }
53553e9753d6SMatthew G. Knepley       }
53569566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
53573e9753d6SMatthew G. Knepley     }
53583e9753d6SMatthew G. Knepley     /* Handle time derivative */
53593e9753d6SMatthew G. Knepley     if (locX_t) {
53603e9753d6SMatthew G. Knepley       PetscScalar *x_t, *fa;
53613e9753d6SMatthew G. Knepley 
53629566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
53639566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
53643e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
53653e9753d6SMatthew G. Knepley         PetscFV      fv;
53663e9753d6SMatthew G. Knepley         PetscObject  obj;
53673e9753d6SMatthew G. Knepley         PetscClassId id;
53683e9753d6SMatthew G. Knepley         PetscInt     pdim, d;
53693e9753d6SMatthew G. Knepley 
53709566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
53719566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
53723e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
53733e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
53749566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
53753e9753d6SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
53763e9753d6SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
53773e9753d6SMatthew G. Knepley           PetscScalar   *u_t, *r;
53783e9753d6SMatthew G. Knepley 
53793e9753d6SMatthew G. Knepley           if (ghostLabel) {
53803e9753d6SMatthew G. Knepley             PetscInt ghostVal;
53813e9753d6SMatthew G. Knepley 
53829566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
53833e9753d6SMatthew G. Knepley             if (ghostVal > 0) continue;
53843e9753d6SMatthew G. Knepley           }
53859566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
53869566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
53873e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
53883e9753d6SMatthew G. Knepley         }
53893e9753d6SMatthew G. Knepley       }
53909566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
53919566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
53923e9753d6SMatthew G. Knepley     }
53933e9753d6SMatthew G. Knepley     if (useFEM) {
53949566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
53959566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
53963e9753d6SMatthew G. Knepley     }
53973e9753d6SMatthew G. Knepley     if (useFVM) {
53989566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
53999566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
54009566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
54019566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
54029566063dSJacob Faibussowitsch       if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
54033e9753d6SMatthew G. Knepley     }
54043e9753d6SMatthew G. Knepley   }
54059566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
54069566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
54073e9753d6SMatthew G. Knepley 
54083e9753d6SMatthew G. Knepley   if (useFEM) {
54099566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user));
54103e9753d6SMatthew G. Knepley 
54113e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
54129566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
54139566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
54143e9753d6SMatthew G. Knepley     } else {
54153e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
54169566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
54179566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
54183e9753d6SMatthew G. Knepley       }
54199566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
54203e9753d6SMatthew G. Knepley     }
54213e9753d6SMatthew G. Knepley   }
54223e9753d6SMatthew G. Knepley 
54233e9753d6SMatthew G. Knepley   /* FEM */
54243e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
54253e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
54263e9753d6SMatthew G. Knepley   /* 3: Handle boundary values */
54273e9753d6SMatthew G. Knepley   /* 4: Loop over domain */
54283e9753d6SMatthew G. Knepley   /*   Extract coefficients */
54293e9753d6SMatthew G. Knepley   /* Loop over fields */
54303e9753d6SMatthew G. Knepley   /*   Set tiling for FE*/
54313e9753d6SMatthew G. Knepley   /*   Integrate FE residual to get elemVec */
54323e9753d6SMatthew G. Knepley   /*     Loop over subdomain */
54333e9753d6SMatthew G. Knepley   /*       Loop over quad points */
54343e9753d6SMatthew G. Knepley   /*         Transform coords to real space */
54353e9753d6SMatthew G. Knepley   /*         Evaluate field and aux fields at point */
54363e9753d6SMatthew G. Knepley   /*         Evaluate residual at point */
54373e9753d6SMatthew G. Knepley   /*         Transform residual to real space */
54383e9753d6SMatthew G. Knepley   /*       Add residual to elemVec */
54393e9753d6SMatthew G. Knepley   /* Loop over domain */
54403e9753d6SMatthew G. Knepley   /*   Add elemVec to locX */
54413e9753d6SMatthew G. Knepley 
54423e9753d6SMatthew G. Knepley   /* FVM */
54433e9753d6SMatthew G. Knepley   /* Get geometric data */
54443e9753d6SMatthew G. Knepley   /* If using gradients */
54453e9753d6SMatthew G. Knepley   /*   Compute gradient data */
54463e9753d6SMatthew G. Knepley   /*   Loop over domain faces */
54473e9753d6SMatthew G. Knepley   /*     Count computational faces */
54483e9753d6SMatthew G. Knepley   /*     Reconstruct cell gradient */
54493e9753d6SMatthew G. Knepley   /*   Loop over domain cells */
54503e9753d6SMatthew G. Knepley   /*     Limit cell gradients */
54513e9753d6SMatthew G. Knepley   /* Handle boundary values */
54523e9753d6SMatthew G. Knepley   /* Loop over domain faces */
54533e9753d6SMatthew G. Knepley   /*   Read out field, centroid, normal, volume for each side of face */
54543e9753d6SMatthew G. Knepley   /* Riemann solve over faces */
54553e9753d6SMatthew G. Knepley   /* Loop over domain faces */
54563e9753d6SMatthew G. Knepley   /*   Accumulate fluxes to cells */
54573e9753d6SMatthew G. Knepley   /* TODO Change printFEM to printDisc here */
54583e9753d6SMatthew G. Knepley   if (mesh->printFEM) {
54593e9753d6SMatthew G. Knepley     Vec          locFbc;
54603e9753d6SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
54613e9753d6SMatthew G. Knepley     PetscScalar *zeroes;
54623e9753d6SMatthew G. Knepley 
54639566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(locF, &locFbc));
54649566063dSJacob Faibussowitsch     PetscCall(VecCopy(locF, locFbc));
54659566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
54669566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
54679566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(maxDof, &zeroes));
546848a46eb9SPierre Jolivet     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
54699566063dSJacob Faibussowitsch     PetscCall(PetscFree(zeroes));
54709566063dSJacob Faibussowitsch     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
54719566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&locFbc));
54723e9753d6SMatthew G. Knepley   }
54733cc88e6aSStefano Zampini end:
54749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
54753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
54763e9753d6SMatthew G. Knepley }
54773e9753d6SMatthew G. Knepley 
5478754e4fbaSMatthew G. Knepley /*@
5479754e4fbaSMatthew G. Knepley   DMPlexComputeResidualHybridByKey - Compute the local residual over hybrid cells for terms matching the input key
54806528b96dSMatthew G. Knepley 
5481754e4fbaSMatthew G. Knepley   Collective
54826528b96dSMatthew G. Knepley 
5483754e4fbaSMatthew G. Knepley   Input Parameters:
5484754e4fbaSMatthew G. Knepley + dm     - The output `DM`
5485754e4fbaSMatthew G. Knepley . key    - The `PetscFormKey` array (left cell, right cell, cohesive cell) indicating what should be integrated
5486754e4fbaSMatthew G. Knepley . cellIS - The `IS` give a set of cells to integrate over
5487754e4fbaSMatthew G. Knepley . time   - The time, or `PETSC_MIN_REAL` to include implicit terms in a time-independent problems
5488754e4fbaSMatthew G. Knepley . locX   - The local solution
5489754e4fbaSMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems
5490754e4fbaSMatthew G. Knepley . t      - The time
5491754e4fbaSMatthew G. Knepley - user   - An optional user context, passed to the pointwise functions
54926528b96dSMatthew G. Knepley 
5493754e4fbaSMatthew G. Knepley   Output Parameter:
5494754e4fbaSMatthew G. Knepley . locF - The local residual
5495754e4fbaSMatthew G. Knepley 
5496754e4fbaSMatthew G. Knepley   Level: developer
5497754e4fbaSMatthew G. Knepley 
5498754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeResidualByKey()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey`
5499754e4fbaSMatthew G. Knepley @*/
5500754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeResidualHybridByKey(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
5501d71ae5a4SJacob Faibussowitsch {
55023e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
55033e9753d6SMatthew G. Knepley   const char     *name       = "Hybrid Residual";
550404c51a94SMatthew G. Knepley   DM              dmAux[3]   = {NULL, NULL, NULL};
55053e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
55066528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
550707218a29SMatthew G. Knepley   PetscDS         dsIn       = NULL;
55086528b96dSMatthew G. Knepley   PetscDS         dsAux[3]   = {NULL, NULL, NULL};
550904c51a94SMatthew G. Knepley   Vec             locA[3]    = {NULL, NULL, NULL};
551007218a29SMatthew G. Knepley   DM              dmScale[3] = {NULL, NULL, NULL};
551107218a29SMatthew G. Knepley   PetscDS         dsScale[3] = {NULL, NULL, NULL};
551207218a29SMatthew G. Knepley   Vec             locS[3]    = {NULL, NULL, NULL};
55133e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
55143e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
551507218a29SMatthew G. Knepley   PetscScalar    *a[3]       = {NULL, NULL, NULL};
551607218a29SMatthew G. Knepley   PetscScalar    *s[3]       = {NULL, NULL, NULL};
5517b2ab40e6SMatthew G. Knepley   PetscScalar    *u          = NULL, *u_t;
551807218a29SMatthew G. Knepley   PetscScalar    *elemVecNeg, *elemVecPos, *elemVecCoh;
5519989fa639SBrad Aagaard   IS              chunkISF, chunkISN;
55203e9753d6SMatthew G. Knepley   const PetscInt *cells;
5521989fa639SBrad Aagaard   PetscInt       *faces, *neighbors;
55223e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
55233e2b0218SMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
55241690c2aeSBarry Smith   PetscInt        maxDegree   = PETSC_INT_MAX;
5525989fa639SBrad Aagaard   PetscQuadrature affineQuadF = NULL, *quadsF = NULL;
5526989fa639SBrad Aagaard   PetscFEGeom    *affineGeomF = NULL, **geomsF = NULL;
5527989fa639SBrad Aagaard   PetscQuadrature affineQuadN = NULL, *quadsN = NULL;
5528989fa639SBrad Aagaard   PetscFEGeom    *affineGeomN = NULL, **geomsN = NULL;
55293e9753d6SMatthew G. Knepley 
55303e9753d6SMatthew G. Knepley   PetscFunctionBegin;
55313cc88e6aSStefano Zampini   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
55323cc88e6aSStefano Zampini   if (!cellIS) goto end;
5533437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
5534437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
55353cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
55365fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
55375fedec97SMatthew G. Knepley     const char *name;
55389566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
553963a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
55405fedec97SMatthew G. Knepley   }
55413e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
55423e9753d6SMatthew G. Knepley   /* FEM */
55433e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
5544b98a7184SJames Wright   PetscCall(DMGetLocalSection(dm, &section));
55459566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
554607218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
55479566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
55489566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
554907218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
55509566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
555104c51a94SMatthew G. Knepley   if (locA[2]) {
55521059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
55531059d808SMatthew G. Knepley 
55549566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
555507218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
55569566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
55576528b96dSMatthew G. Knepley     {
55586528b96dSMatthew G. Knepley       const PetscInt *cone;
55596528b96dSMatthew G. Knepley       PetscInt        c;
55606528b96dSMatthew G. Knepley 
55611059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
55626528b96dSMatthew G. Knepley       for (c = 0; c < 2; ++c) {
55636528b96dSMatthew G. Knepley         const PetscInt *support;
55646528b96dSMatthew G. Knepley         PetscInt        ssize, s;
55656528b96dSMatthew G. Knepley 
55669566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
55679566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
55681059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
55691059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
55701059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
55711059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
55729566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
5573c75bfeddSPierre Jolivet         PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part);
55749566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5575ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
557607218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
55779566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
55786528b96dSMatthew G. Knepley       }
55796528b96dSMatthew G. Knepley     }
55803e9753d6SMatthew G. Knepley   }
558107218a29SMatthew G. Knepley   /* Handle mass matrix scaling
558207218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
558307218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
558407218a29SMatthew G. Knepley   if (locS[2]) {
55853e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
558607218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
558707218a29SMatthew G. Knepley 
558807218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
55893e2b0218SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL));
55903e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
559107218a29SMatthew G. Knepley     // BRAD: This is not set correctly
559207218a29SMatthew G. Knepley     key[2].field = 2;
559307218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
559407218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
559507218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
55963e2b0218SMatthew G. Knepley     {
55973e2b0218SMatthew G. Knepley       const PetscInt *cone;
55983e2b0218SMatthew G. Knepley       PetscInt        c;
55993e2b0218SMatthew G. Knepley 
56003e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
56013e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
56023e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
56033e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
56043e2b0218SMatthew G. Knepley         const PetscInt *support;
56053e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
56063e2b0218SMatthew G. Knepley 
56073e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
56083e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
56093e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
56103e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
56113e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
56123e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
56133e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
56143e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
56153e2b0218SMatthew G. Knepley       }
56163e2b0218SMatthew G. Knepley     }
561707218a29SMatthew G. Knepley   }
56183e9753d6SMatthew G. Knepley   /* 2: Setup geometric data */
56199566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
56209566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
56213e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
5622989fa639SBrad Aagaard     PetscCall(PetscCalloc4(Nf, &quadsF, Nf, &geomsF, Nf, &quadsN, Nf, &geomsN));
56233e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
56243e9753d6SMatthew G. Knepley       PetscFE   fe;
5625989fa639SBrad Aagaard       PetscBool isCohesiveField;
56263e9753d6SMatthew G. Knepley 
56279566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
56283e9753d6SMatthew G. Knepley       if (fe) {
5629989fa639SBrad Aagaard         PetscCall(PetscFEGetQuadrature(fe, &quadsF[f]));
5630989fa639SBrad Aagaard         PetscCall(PetscObjectReference((PetscObject)quadsF[f]));
5631989fa639SBrad Aagaard       }
5632989fa639SBrad Aagaard       PetscCall(PetscDSGetDiscretization(dsIn, f, (PetscObject *)&fe));
5633989fa639SBrad Aagaard       PetscCall(PetscDSGetCohesive(dsIn, f, &isCohesiveField));
5634989fa639SBrad Aagaard       if (fe) {
5635989fa639SBrad Aagaard         if (isCohesiveField) {
5636989fa639SBrad Aagaard           for (PetscInt g = 0; g < Nf; ++g) {
5637989fa639SBrad Aagaard             PetscCall(PetscDSGetDiscretization(dsIn, g, (PetscObject *)&fe));
5638989fa639SBrad Aagaard             PetscCall(PetscDSGetCohesive(dsIn, g, &isCohesiveField));
5639989fa639SBrad Aagaard             if (!isCohesiveField) break;
5640989fa639SBrad Aagaard           }
5641989fa639SBrad Aagaard         }
5642989fa639SBrad Aagaard         PetscCall(PetscFEGetQuadrature(fe, &quadsN[f]));
5643989fa639SBrad Aagaard         PetscCall(PetscObjectReference((PetscObject)quadsN[f]));
56443e9753d6SMatthew G. Knepley       }
56453e9753d6SMatthew G. Knepley     }
56463e9753d6SMatthew G. Knepley   }
56473e9753d6SMatthew G. Knepley   /* Loop over chunks */
56483e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
56493e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
5650989fa639SBrad Aagaard   PetscCall(PetscCalloc2(2 * cellChunkSize, &faces, 2 * cellChunkSize, &neighbors));
5651989fa639SBrad Aagaard   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkISF));
5652989fa639SBrad Aagaard   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, neighbors, PETSC_USE_POINTER, &chunkISN));
56533e9753d6SMatthew G. Knepley   /* Extract field coefficients */
56543e9753d6SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
565507218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
565607218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
56573e2b0218SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
565807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg));
565907218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos));
566007218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh));
56613e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
56623e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
56633e9753d6SMatthew G. Knepley 
566407218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim));
566507218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim));
566607218a29SMatthew G. Knepley     PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim));
5667989fa639SBrad Aagaard     /* Get faces and neighbors */
56683e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
56693e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
5670989fa639SBrad Aagaard       const PetscInt *cone, *support;
56719566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, cell, &cone));
567207218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
567307218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
5674989fa639SBrad Aagaard       PetscCall(DMPlexGetSupport(dm, cone[0], &support));
5675989fa639SBrad Aagaard       neighbors[(c - cS) * 2 + 0] = support[0] == cell ? support[1] : support[0];
5676989fa639SBrad Aagaard       PetscCall(DMPlexGetSupport(dm, cone[1], &support));
5677989fa639SBrad Aagaard       neighbors[(c - cS) * 2 + 1] = support[0] == cell ? support[1] : support[0];
56783e9753d6SMatthew G. Knepley     }
5679989fa639SBrad Aagaard     PetscCall(ISGeneralSetIndices(chunkISF, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
5680989fa639SBrad Aagaard     PetscCall(ISGeneralSetIndices(chunkISN, 2 * cellChunkSize, neighbors, PETSC_USE_POINTER));
56813e9753d6SMatthew G. Knepley     /* Get geometric data */
56823e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
5683989fa639SBrad Aagaard       if (!affineQuadF) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkISF, &affineQuadF));
5684989fa639SBrad Aagaard       if (affineQuadF) PetscCall(DMSNESGetFEGeom(coordField, chunkISF, affineQuadF, PETSC_FEGEOM_COHESIVE, &affineGeomF));
5685989fa639SBrad Aagaard       if (!affineQuadN) {
5686989fa639SBrad Aagaard         PetscInt dim;
5687989fa639SBrad Aagaard         PetscCall(PetscQuadratureGetData(affineQuadF, &dim, NULL, NULL, NULL, NULL));
5688989fa639SBrad Aagaard         PetscCall(DMFieldCreateDefaultFaceQuadrature(coordField, chunkISN, &affineQuadN));
5689989fa639SBrad Aagaard         PetscCall(PetscQuadratureSetData(affineQuadN, dim + 1, PETSC_DECIDE, PETSC_DECIDE, NULL, NULL));
5690989fa639SBrad Aagaard       }
5691989fa639SBrad Aagaard       if (affineQuadN) PetscCall(DMSNESGetFEGeom(coordField, chunkISN, affineQuadN, PETSC_FEGEOM_BASIC, &affineGeomN));
56923e9753d6SMatthew G. Knepley     } else {
56933e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
5694989fa639SBrad Aagaard         if (quadsF[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkISF, quadsF[f], PETSC_FEGEOM_COHESIVE, &geomsF[f]));
5695989fa639SBrad Aagaard         if (quadsN[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkISN, quadsN[f], PETSC_FEGEOM_BASIC, &geomsN[f]));
56963e9753d6SMatthew G. Knepley       }
56973e9753d6SMatthew G. Knepley     }
56983e9753d6SMatthew G. Knepley     /* Loop over fields */
56993e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
57003e9753d6SMatthew G. Knepley       PetscFE         fe;
5701989fa639SBrad Aagaard       PetscFEGeom    *geomF      = affineGeomF ? affineGeomF : geomsF[f];
5702989fa639SBrad Aagaard       PetscFEGeom    *chunkGeomF = NULL, *remGeomF = NULL;
5703989fa639SBrad Aagaard       PetscFEGeom    *geomN      = affineGeomN ? affineGeomN : geomsN[f];
5704989fa639SBrad Aagaard       PetscFEGeom    *chunkGeomN = NULL, *remGeomN = NULL;
5705989fa639SBrad Aagaard       PetscQuadrature quadF = affineQuadF ? affineQuadF : quadsF[f];
57063e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
57075fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
57083e9753d6SMatthew G. Knepley 
57099566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
57103e9753d6SMatthew G. Knepley       if (!fe) continue;
57119566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
5712989fa639SBrad Aagaard       PetscCall(PetscQuadratureGetData(quadF, NULL, NULL, &Nq, NULL, NULL));
57139566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
57143e9753d6SMatthew G. Knepley       blockSize = Nb;
57153e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
57169566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
57173e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
57183e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
57193e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
57203e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
5721989fa639SBrad Aagaard       PetscCall(PetscFEGeomGetChunk(geomF, 0, offset * 2, &chunkGeomF));
5722989fa639SBrad Aagaard       PetscCall(PetscFEGeomGetChunk(geomF, offset * 2, numCells * 2, &remGeomF));
5723989fa639SBrad Aagaard       PetscCall(PetscFEGeomGetChunk(geomN, 0, offset * 2, &chunkGeomN));
5724989fa639SBrad Aagaard       PetscCall(PetscFEGeomGetChunk(geomN, offset * 2, numCells * 2, &remGeomN));
57259566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
5726989fa639SBrad Aagaard       // TODO Do I need to set isCohesive on the chunks?
57276528b96dSMatthew G. Knepley       key[0].field = f;
57286528b96dSMatthew G. Knepley       key[1].field = f;
57295fedec97SMatthew G. Knepley       key[2].field = f;
5730989fa639SBrad Aagaard       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[0], a[0], t, elemVecNeg));
5731989fa639SBrad Aagaard       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, &elemVecNeg[offset * totDim]));
5732989fa639SBrad Aagaard       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[1], a[1], t, elemVecPos));
5733989fa639SBrad Aagaard       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, &elemVecPos[offset * totDim]));
5734989fa639SBrad Aagaard       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[2], a[2], t, elemVecCoh));
5735989fa639SBrad Aagaard       PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, &elemVecCoh[offset * totDim]));
5736989fa639SBrad Aagaard       PetscCall(PetscFEGeomRestoreChunk(geomF, offset, numCells, &remGeomF));
5737989fa639SBrad Aagaard       PetscCall(PetscFEGeomRestoreChunk(geomF, 0, offset, &chunkGeomF));
5738989fa639SBrad Aagaard       PetscCall(PetscFEGeomRestoreChunk(geomN, offset, numCells, &remGeomN));
5739989fa639SBrad Aagaard       PetscCall(PetscFEGeomRestoreChunk(geomN, 0, offset, &chunkGeomN));
57403e9753d6SMatthew G. Knepley     }
57413e9753d6SMatthew G. Knepley     /* Add elemVec to locX */
57423e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
57433e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
57443e9753d6SMatthew G. Knepley       const PetscInt cind = c - cStart;
574507218a29SMatthew G. Knepley       PetscInt       i;
57463e9753d6SMatthew G. Knepley 
574707218a29SMatthew G. Knepley       /* Scale element values */
574807218a29SMatthew G. Knepley       if (locS[0]) {
57493e2b0218SMatthew G. Knepley         PetscInt  Nb, off = cind * totDim, soff = cind * totDimScale[0];
575007218a29SMatthew G. Knepley         PetscBool cohesive;
575107218a29SMatthew G. Knepley 
575207218a29SMatthew G. Knepley         for (f = 0; f < Nf; ++f) {
575307218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, f, &Nb));
575407218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
575507218a29SMatthew G. Knepley           if (f == key[2].field) {
575607218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
575707218a29SMatthew G. Knepley             // No cohesive scaling field is currently input
575807218a29SMatthew G. Knepley             for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i];
575907218a29SMatthew G. Knepley             off += Nb;
576007218a29SMatthew G. Knepley           } else {
576107218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
576207218a29SMatthew G. Knepley 
576307218a29SMatthew G. Knepley             for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i];
576407218a29SMatthew G. Knepley             off += N;
576507218a29SMatthew G. Knepley           }
576607218a29SMatthew G. Knepley         }
576707218a29SMatthew G. Knepley       } else {
576807218a29SMatthew G. Knepley         for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i];
576907218a29SMatthew G. Knepley       }
577007218a29SMatthew G. Knepley       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim]));
57713e9753d6SMatthew G. Knepley       if (ghostLabel) {
57723e9753d6SMatthew G. Knepley         PetscInt ghostVal;
57733e9753d6SMatthew G. Knepley 
57749566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
57753e9753d6SMatthew G. Knepley         if (ghostVal > 0) continue;
57763e9753d6SMatthew G. Knepley       }
577707218a29SMatthew G. Knepley       PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES));
57783e9753d6SMatthew G. Knepley     }
57793e9753d6SMatthew G. Knepley   }
57809566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
578107218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
57823e2b0218SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
578307218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg));
578407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos));
578507218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh));
5786989fa639SBrad Aagaard   PetscCall(PetscFree2(faces, neighbors));
5787989fa639SBrad Aagaard   PetscCall(ISDestroy(&chunkISF));
5788989fa639SBrad Aagaard   PetscCall(ISDestroy(&chunkISN));
57899566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
57903e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
5791989fa639SBrad Aagaard     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuadF, PETSC_FALSE, &affineGeomF));
5792989fa639SBrad Aagaard     PetscCall(PetscQuadratureDestroy(&affineQuadF));
5793989fa639SBrad Aagaard     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuadN, PETSC_FALSE, &affineGeomN));
5794989fa639SBrad Aagaard     PetscCall(PetscQuadratureDestroy(&affineQuadN));
57953e9753d6SMatthew G. Knepley   } else {
57963e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
5797989fa639SBrad Aagaard       if (geomsF) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quadsF[f], PETSC_FALSE, &geomsF[f]));
5798989fa639SBrad Aagaard       if (quadsF) PetscCall(PetscQuadratureDestroy(&quadsF[f]));
5799989fa639SBrad Aagaard       if (geomsN) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quadsN[f], PETSC_FALSE, &geomsN[f]));
5800989fa639SBrad Aagaard       if (quadsN) PetscCall(PetscQuadratureDestroy(&quadsN[f]));
58013e9753d6SMatthew G. Knepley     }
5802989fa639SBrad Aagaard     PetscCall(PetscFree4(quadsF, geomsF, quadsN, geomsN));
58033e9753d6SMatthew G. Knepley   }
580485cc2951SMatthew G. Knepley   if (mesh->printFEM) {
580585cc2951SMatthew G. Knepley     Vec          locFbc;
580685cc2951SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
580785cc2951SMatthew G. Knepley     PetscScalar *zeroes;
580885cc2951SMatthew G. Knepley 
580985cc2951SMatthew G. Knepley     PetscCall(VecDuplicate(locF, &locFbc));
581085cc2951SMatthew G. Knepley     PetscCall(VecCopy(locF, locFbc));
581185cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
581285cc2951SMatthew G. Knepley     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
581385cc2951SMatthew G. Knepley     PetscCall(PetscCalloc1(maxDof, &zeroes));
581485cc2951SMatthew G. Knepley     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
581585cc2951SMatthew G. Knepley     PetscCall(PetscFree(zeroes));
581685cc2951SMatthew G. Knepley     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
581785cc2951SMatthew G. Knepley     PetscCall(VecDestroy(&locFbc));
581885cc2951SMatthew G. Knepley   }
58193cc88e6aSStefano Zampini end:
58209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
58213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58223e9753d6SMatthew G. Knepley }
58233e9753d6SMatthew G. Knepley 
5824a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS)
5825d71ae5a4SJacob Faibussowitsch {
58263e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
58273e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL, tdm;
58283e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
5829be62b2b4SMatthew G. Knepley   PetscDS         ds, dsAux           = NULL;
58303e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
5831e432b41dSStefano Zampini   PetscSection    globalSection;
58323e9753d6SMatthew G. Knepley   Vec             locA = NULL, tv;
5833be62b2b4SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL;
58343e9753d6SMatthew G. Knepley   PetscInt        v;
58353e9753d6SMatthew G. Knepley   PetscInt        Nf, totDim, totDimAux = 0;
5836be62b2b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, transform;
58373e9753d6SMatthew G. Knepley 
58383e9753d6SMatthew G. Knepley   PetscFunctionBegin;
58399566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
58409566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
58419566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
58429566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
5843be62b2b4SMatthew G. Knepley   PetscCall(DMGetDS(dm, &ds));
5844be62b2b4SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(ds, &Nf));
5845be62b2b4SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
584621a4fad8SMatthew G. Knepley   PetscCall(PetscWeakFormHasBdJacobian(wf, &hasJac));
584721a4fad8SMatthew G. Knepley   PetscCall(PetscWeakFormHasBdJacobianPreconditioner(wf, &hasPrec));
584821a4fad8SMatthew G. Knepley   if (!hasJac && !hasPrec) PetscFunctionReturn(PETSC_SUCCESS);
584921a4fad8SMatthew G. Knepley   PetscCall(DMConvert(dm, DMPLEX, &plex));
58509566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA));
58513e9753d6SMatthew G. Knepley   if (locA) {
58523e9753d6SMatthew G. Knepley     DM dmAux;
58533e9753d6SMatthew G. Knepley 
58549566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
58559566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
58569566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
5857be62b2b4SMatthew G. Knepley     PetscCall(DMGetDS(plexA, &dsAux));
5858be62b2b4SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
58599566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
58603e9753d6SMatthew G. Knepley   }
58613e9753d6SMatthew G. Knepley 
58629566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
58633e9753d6SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
58643e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
58653e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
58663e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
58673e9753d6SMatthew G. Knepley     IS              pointIS;
58683e9753d6SMatthew G. Knepley     const PetscInt *points;
586906ad1575SMatthew G. Knepley     PetscFormKey    key;
58703e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
58713e9753d6SMatthew G. Knepley 
587245480ffeSMatthew G. Knepley     key.label = label;
587345480ffeSMatthew G. Knepley     key.value = values[v];
587406ad1575SMatthew G. Knepley     key.part  = 0;
58759566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
58763e9753d6SMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
58773e9753d6SMatthew G. Knepley     {
58783e9753d6SMatthew G. Knepley       IS isectIS;
58793e9753d6SMatthew G. Knepley 
58803e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */
58819566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
58829566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
58833e9753d6SMatthew G. Knepley       pointIS = isectIS;
58843e9753d6SMatthew G. Knepley     }
58859566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
58869566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
588732603206SJames Wright     PetscCall(PetscMalloc5(numFaces * totDim, &u, (locX_t ? (size_t)numFaces * totDim : 0), &u_t, (hasJac ? (size_t)numFaces * totDim * totDim : 0), &elemMat, (hasPrec ? (size_t)numFaces * totDim * totDim : 0), &elemMatP, (locA ? (size_t)numFaces * totDimAux : 0), &a));
58889566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
588948a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
58903e9753d6SMatthew G. Knepley     if (!qGeom) {
58913e9753d6SMatthew G. Knepley       PetscFE fe;
58923e9753d6SMatthew G. Knepley 
5893be62b2b4SMatthew G. Knepley       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe));
58949566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
58959566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
58963e9753d6SMatthew G. Knepley     }
58979566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
5898ac9d17c7SMatthew G. Knepley     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_FEGEOM_BOUNDARY, &fgeom));
58993e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
5900f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
59013e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
5902f15274beSMatthew Knepley       PetscInt       i;
59033e9753d6SMatthew G. Knepley 
59049566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
59059566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
59063e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
59079566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
59083e9753d6SMatthew G. Knepley       if (locX_t) {
59099566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
59103e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
59119566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
59123e9753d6SMatthew G. Knepley       }
59133e9753d6SMatthew G. Knepley       if (locA) {
59143e9753d6SMatthew G. Knepley         PetscInt subp;
59159566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
59169566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
59173e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
59189566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
59193e9753d6SMatthew G. Knepley       }
59203e9753d6SMatthew G. Knepley     }
592121a4fad8SMatthew G. Knepley     if (elemMat) PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim));
592221a4fad8SMatthew G. Knepley     if (elemMatP) PetscCall(PetscArrayzero(elemMatP, numFaces * totDim * totDim));
59233e9753d6SMatthew G. Knepley     {
59243e9753d6SMatthew G. Knepley       PetscFE  fe;
59253e9753d6SMatthew G. Knepley       PetscInt Nb;
59263e9753d6SMatthew G. Knepley       /* Conforming batches */
59273e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
59283e9753d6SMatthew G. Knepley       /* Remainder */
59293e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
59303e9753d6SMatthew G. Knepley       PetscInt     fieldJ, Nr, offset;
59313e9753d6SMatthew G. Knepley 
5932be62b2b4SMatthew G. Knepley       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe));
59339566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
59349566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
59353e9753d6SMatthew G. Knepley       blockSize = Nb;
59363e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
59379566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
59383e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
59393e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
59403e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
59413e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
59429566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
59433e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
594445480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
5945be62b2b4SMatthew G. Knepley         if (hasJac) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMat));
5946be62b2b4SMatthew G. Knepley         if (hasPrec) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMatP));
59473e9753d6SMatthew G. Knepley       }
59489566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
59493e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
595045480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
5951be62b2b4SMatthew G. Knepley         if (hasJac)
59528e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
5953be62b2b4SMatthew G. Knepley         if (hasPrec)
59548e3a54c0SPierre Jolivet           PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim]));
59553e9753d6SMatthew G. Knepley       }
59569566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
59573e9753d6SMatthew G. Knepley     }
59583e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
59593e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
59603e9753d6SMatthew G. Knepley 
59613e9753d6SMatthew G. Knepley       /* Transform to global basis before insertion in Jacobian */
59629566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
596321a4fad8SMatthew G. Knepley       if (hasJac && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim]));
596421a4fad8SMatthew G. Knepley       if (hasPrec && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMatP[face * totDim * totDim]));
5965be62b2b4SMatthew G. Knepley       if (hasPrec) {
5966be62b2b4SMatthew G. Knepley         if (hasJac) {
59679566063dSJacob Faibussowitsch           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
596821a4fad8SMatthew G. Knepley           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
59693e9753d6SMatthew G. Knepley         }
5970be62b2b4SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMatP[face * totDim * totDim]));
5971be62b2b4SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMatP[face * totDim * totDim], ADD_VALUES));
5972be62b2b4SMatthew G. Knepley       } else {
5973be62b2b4SMatthew G. Knepley         if (hasJac) {
5974be62b2b4SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
597521a4fad8SMatthew G. Knepley           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
5976be62b2b4SMatthew G. Knepley         }
5977be62b2b4SMatthew G. Knepley       }
5978be62b2b4SMatthew G. Knepley     }
59799566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
59809566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
59819566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
59829566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
5983be62b2b4SMatthew G. Knepley     PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, a));
59843e9753d6SMatthew G. Knepley   }
59859566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
59869566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
59873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59883e9753d6SMatthew G. Knepley }
59893e9753d6SMatthew G. Knepley 
5990d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP)
5991d71ae5a4SJacob Faibussowitsch {
59923e9753d6SMatthew G. Knepley   DMField  coordField;
59933e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
59943e9753d6SMatthew G. Knepley   IS       facetIS;
59953e9753d6SMatthew G. Knepley   PetscInt dim;
59963e9753d6SMatthew G. Knepley 
59973e9753d6SMatthew G. Knepley   PetscFunctionBegin;
59989566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
59999566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
60009566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
60019566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
60029566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
60039566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
60043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60053e9753d6SMatthew G. Knepley }
60063e9753d6SMatthew G. Knepley 
6007a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user)
6008d71ae5a4SJacob Faibussowitsch {
60093e9753d6SMatthew G. Knepley   PetscDS  prob;
60103e9753d6SMatthew G. Knepley   PetscInt dim, numBd, bd;
60113e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
60123e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
60133e9753d6SMatthew G. Knepley   IS       facetIS;
60143e9753d6SMatthew G. Knepley 
60153e9753d6SMatthew G. Knepley   PetscFunctionBegin;
60169566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
60179566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
60189566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
60199566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
60209566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
60219566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
60223e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
602345480ffeSMatthew G. Knepley     PetscWeakForm           wf;
60243e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
60253e9753d6SMatthew G. Knepley     DMLabel                 label;
60263e9753d6SMatthew G. Knepley     const PetscInt         *values;
60273e9753d6SMatthew G. Knepley     PetscInt                fieldI, numValues;
60283e9753d6SMatthew G. Knepley     PetscObject             obj;
60293e9753d6SMatthew G. Knepley     PetscClassId            id;
60303e9753d6SMatthew G. Knepley 
60319566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL));
60323d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
60339566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj));
60349566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
60353d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
60369566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
60373e9753d6SMatthew G. Knepley   }
60389566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
60393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60403e9753d6SMatthew G. Knepley }
60413e9753d6SMatthew G. Knepley 
6042754e4fbaSMatthew G. Knepley /*@
6043754e4fbaSMatthew G. Knepley   DMPlexComputeJacobianByKey - Compute the local Jacobian for terms matching the input key
6044754e4fbaSMatthew G. Knepley 
6045754e4fbaSMatthew G. Knepley   Collective
6046754e4fbaSMatthew G. Knepley 
6047754e4fbaSMatthew G. Knepley   Input Parameters:
6048754e4fbaSMatthew G. Knepley + dm       - The output `DM`
6049754e4fbaSMatthew G. Knepley . key      - The `PetscFormKey` indicating what should be integrated
6050754e4fbaSMatthew G. Knepley . cellIS   - The `IS` give a set of cells to integrate over
6051754e4fbaSMatthew G. Knepley . t        - The time
6052754e4fbaSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with respect to $X_t$
6053754e4fbaSMatthew G. Knepley . locX     - The local solution
6054754e4fbaSMatthew G. Knepley . locX_t   - The time derivative of the local solution, or `NULL` for time-independent problems
6055754e4fbaSMatthew G. Knepley - user     - An optional user context, passed to the pointwise functions
6056754e4fbaSMatthew G. Knepley 
6057754e4fbaSMatthew G. Knepley   Output Parameters:
6058754e4fbaSMatthew G. Knepley + Jac  - The local Jacobian
6059754e4fbaSMatthew G. Knepley - JacP - The local Jacobian preconditioner
6060754e4fbaSMatthew G. Knepley 
6061754e4fbaSMatthew G. Knepley   Level: developer
6062754e4fbaSMatthew G. Knepley 
6063754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeResidualByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey`
6064754e4fbaSMatthew G. Knepley @*/
6065754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobianByKey(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user)
6066d71ae5a4SJacob Faibussowitsch {
60673e9753d6SMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
60683e9753d6SMatthew G. Knepley   const char     *name  = "Jacobian";
60699a2a23afSMatthew G. Knepley   DM              dmAux = NULL, plex, tdm;
60703e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
60713e9753d6SMatthew G. Knepley   Vec             A, tv;
60723e9753d6SMatthew G. Knepley   DMField         coordField;
60733e9753d6SMatthew G. Knepley   PetscDS         prob, probAux = NULL;
6074e432b41dSStefano Zampini   PetscSection    section, globalSection, sectionAux;
60753e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL;
60763e9753d6SMatthew G. Knepley   const PetscInt *cells;
60773e9753d6SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
607828351e22SJed Brown   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
6079e04ae0b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform;
60803e9753d6SMatthew G. Knepley 
60813e9753d6SMatthew G. Knepley   PetscFunctionBegin;
6082af18b51aSmarkadams4   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
6083ae3cf2c1SStefano Zampini   PetscCall(DMGetLocalSection(dm, &section));
6084ae3cf2c1SStefano Zampini   PetscCall(DMGetGlobalSection(dm, &globalSection));
6085ae3cf2c1SStefano Zampini   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
6086ae3cf2c1SStefano Zampini   if (A) {
6087ae3cf2c1SStefano Zampini     PetscCall(VecGetDM(A, &dmAux));
6088ae3cf2c1SStefano Zampini     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
6089ae3cf2c1SStefano Zampini     PetscCall(DMConvert(dmAux, DMPLEX, &plex));
6090ae3cf2c1SStefano Zampini     PetscCall(DMGetLocalSection(plex, &sectionAux));
6091ae3cf2c1SStefano Zampini     PetscCall(DMGetDS(dmAux, &probAux));
6092ae3cf2c1SStefano Zampini     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
6093ae3cf2c1SStefano Zampini   }
6094ae3cf2c1SStefano Zampini   PetscCall(DMGetCoordinateField(dm, &coordField));
6095e04ae0b4SMatthew G. Knepley   if (!cellIS) goto end;
60969566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
6097437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
6098437e83fbSMatthew G. Knepley   if (cStart >= cEnd) goto end;
60999566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
61009566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
61019566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
610207218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
61039566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
61049566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
61059566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
61069566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
61073e9753d6SMatthew G. Knepley   /* user passed in the same matrix, avoid double contributions and
61083e9753d6SMatthew G. Knepley      only assemble the Jacobian */
61093e9753d6SMatthew G. Knepley   if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE;
61109566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
61113e9753d6SMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
6112754e4fbaSMatthew G. Knepley   PetscCall(PetscMalloc5(numCells * totDim, &u, (locX_t ? (size_t)numCells * totDim : 0), &u_t, (hasJac ? (size_t)numCells * totDim * totDim : 0), &elemMat, (hasPrec ? (size_t)numCells * totDim * totDim : 0), &elemMatP, (hasDyn ? (size_t)numCells * totDim * totDim : 0), &elemMatD));
61139566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
61143e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
61153e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
61163e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
61173e9753d6SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
61183e9753d6SMatthew G. Knepley     PetscInt       i;
61193e9753d6SMatthew G. Knepley 
6120754e4fbaSMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(dm, section, locX, cell, NULL, &x));
61213e9753d6SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
6122754e4fbaSMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cell, NULL, &x));
6123754e4fbaSMatthew G. Knepley     if (locX_t) {
6124754e4fbaSMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(dm, section, locX_t, cell, NULL, &x_t));
61253e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
6126754e4fbaSMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(dm, section, locX_t, cell, NULL, &x_t));
61273e9753d6SMatthew G. Knepley     }
61283e9753d6SMatthew G. Knepley     if (dmAux) {
61293e9753d6SMatthew G. Knepley       PetscInt subcell;
61309566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
61319566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x));
61323e9753d6SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
61339566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x));
61343e9753d6SMatthew G. Knepley     }
61353e9753d6SMatthew G. Knepley   }
61369566063dSJacob Faibussowitsch   if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
61379566063dSJacob Faibussowitsch   if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim));
61389566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
61393e9753d6SMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
61403e9753d6SMatthew G. Knepley     PetscClassId    id;
61413e9753d6SMatthew G. Knepley     PetscFE         fe;
61423e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
61433e9753d6SMatthew G. Knepley     PetscInt        Nb;
61443e9753d6SMatthew G. Knepley     /* Conforming batches */
61453e9753d6SMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
61463e9753d6SMatthew G. Knepley     /* Remainder */
61473e9753d6SMatthew G. Knepley     PetscInt     Nr, offset, Nq;
61483e9753d6SMatthew G. Knepley     PetscInt     maxDegree;
61493e9753d6SMatthew G. Knepley     PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
61503e9753d6SMatthew G. Knepley 
61519566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
61529566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId((PetscObject)fe, &id));
61539371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
61549371c9d4SSatish Balay       hasFV = PETSC_TRUE;
61559371c9d4SSatish Balay       continue;
61569371c9d4SSatish Balay     }
61579566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
61589566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
61599566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
616048a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
61613e9753d6SMatthew G. Knepley     if (!qGeom) {
61629566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
61639566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
61643e9753d6SMatthew G. Knepley     }
61659566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
6166ac9d17c7SMatthew G. Knepley     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FEGEOM_BASIC, &cgeomFEM));
61673e9753d6SMatthew G. Knepley     blockSize = Nb;
61683e9753d6SMatthew G. Knepley     batchSize = numBlocks * blockSize;
61699566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
61703e9753d6SMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
61713e9753d6SMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
61723e9753d6SMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
61733e9753d6SMatthew G. Knepley     offset    = numCells - Nr;
61749566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
61759566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
61763e9753d6SMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
61776528b96dSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
61783e9753d6SMatthew G. Knepley       if (hasJac) {
61799566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
61808e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
61813e9753d6SMatthew G. Knepley       }
61823e9753d6SMatthew G. Knepley       if (hasPrec) {
61839566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP));
61848e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim]));
61853e9753d6SMatthew G. Knepley       }
61863e9753d6SMatthew G. Knepley       if (hasDyn) {
61879566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
61888e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatD[offset * totDim * totDim]));
61893e9753d6SMatthew G. Knepley       }
61903e9753d6SMatthew G. Knepley     }
61919566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
61929566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
61939566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
61949566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
61953e9753d6SMatthew G. Knepley   }
61963e9753d6SMatthew G. Knepley   /*   Add contribution from X_t */
61979371c9d4SSatish Balay   if (hasDyn) {
61989371c9d4SSatish Balay     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
61999371c9d4SSatish Balay   }
62003e9753d6SMatthew G. Knepley   if (hasFV) {
62013e9753d6SMatthew G. Knepley     PetscClassId id;
62023e9753d6SMatthew G. Knepley     PetscFV      fv;
62033e9753d6SMatthew G. Knepley     PetscInt     offsetI, NcI, NbI = 1, fc, f;
62043e9753d6SMatthew G. Knepley 
62053e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
62069566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
62079566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI));
62089566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId((PetscObject)fv, &id));
62093e9753d6SMatthew G. Knepley       if (id != PETSCFV_CLASSID) continue;
62102f86f8c5SMatthew G. Knepley       /* Put in the weighted identity */
62119566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &NcI));
62123e9753d6SMatthew G. Knepley       for (c = cStart; c < cEnd; ++c) {
62133e9753d6SMatthew G. Knepley         const PetscInt cind    = c - cStart;
62143e9753d6SMatthew G. Knepley         const PetscInt eOffset = cind * totDim * totDim;
62152f86f8c5SMatthew G. Knepley         PetscReal      vol;
62162f86f8c5SMatthew G. Knepley 
62172f86f8c5SMatthew G. Knepley         PetscCall(DMPlexComputeCellGeometryFVM(dm, c, &vol, NULL, NULL));
62183e9753d6SMatthew G. Knepley         for (fc = 0; fc < NcI; ++fc) {
62193e9753d6SMatthew G. Knepley           for (f = 0; f < NbI; ++f) {
62203e9753d6SMatthew G. Knepley             const PetscInt i = offsetI + f * NcI + fc;
62213e9753d6SMatthew G. Knepley             if (hasPrec) {
62222f86f8c5SMatthew G. Knepley               if (hasJac) elemMat[eOffset + i * totDim + i] = vol;
62232f86f8c5SMatthew G. Knepley               elemMatP[eOffset + i * totDim + i] = vol;
62249371c9d4SSatish Balay             } else {
62252f86f8c5SMatthew G. Knepley               elemMat[eOffset + i * totDim + i] = vol;
62269371c9d4SSatish Balay             }
62273e9753d6SMatthew G. Knepley           }
62283e9753d6SMatthew G. Knepley         }
62293e9753d6SMatthew G. Knepley       }
62303e9753d6SMatthew G. Knepley     }
62313e9753d6SMatthew G. Knepley     /* No allocated space for FV stuff, so ignore the zero entries */
62329566063dSJacob Faibussowitsch     PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE));
62333e9753d6SMatthew G. Knepley   }
62343e9753d6SMatthew G. Knepley   /* Insert values into matrix */
62353e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
62363e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
62373e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
62383e9753d6SMatthew G. Knepley 
62393e9753d6SMatthew G. Knepley     /* Transform to global basis before insertion in Jacobian */
62409566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim]));
62413e9753d6SMatthew G. Knepley     if (hasPrec) {
62423e9753d6SMatthew G. Knepley       if (hasJac) {
62439566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
6244e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
62453e9753d6SMatthew G. Knepley       }
62469566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
6247be62b2b4SMatthew G. Knepley       PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
62483e9753d6SMatthew G. Knepley     } else {
62493e9753d6SMatthew G. Knepley       if (hasJac) {
62509566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
6251e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
62523e9753d6SMatthew G. Knepley       }
62533e9753d6SMatthew G. Knepley     }
62543e9753d6SMatthew G. Knepley   }
62559566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
62569566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
62579566063dSJacob Faibussowitsch   PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD));
6258d9302694SMatthew G. Knepley   if (dmAux) PetscCall(PetscFree(a));
62593e9753d6SMatthew G. Knepley   /* Compute boundary integrals */
6260754e4fbaSMatthew G. Knepley   PetscCall(DMPlexComputeBdJacobian_Internal(dm, locX, locX_t, t, X_tShift, Jac, JacP, user));
62613e9753d6SMatthew G. Knepley   /* Assemble matrix */
62629371c9d4SSatish Balay end: {
6263e04ae0b4SMatthew G. Knepley   PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp;
6264e04ae0b4SMatthew G. Knepley 
6265d9302694SMatthew G. Knepley   if (dmAux) PetscCall(DMDestroy(&plex));
6266462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
62673e9753d6SMatthew G. Knepley   if (hasJac && hasPrec) {
62689566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
62699566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
62703e9753d6SMatthew G. Knepley   }
6271e04ae0b4SMatthew G. Knepley }
62729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
62739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
62749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
62753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62763e9753d6SMatthew G. Knepley }
62773e9753d6SMatthew G. Knepley 
6278754e4fbaSMatthew G. Knepley /*@
6279754e4fbaSMatthew G. Knepley   DMPlexComputeJacobianHybridByKey - Compute the local Jacobian over hybrid cells for terms matching the input key
6280754e4fbaSMatthew G. Knepley 
6281754e4fbaSMatthew G. Knepley   Collective
6282754e4fbaSMatthew G. Knepley 
6283754e4fbaSMatthew G. Knepley   Input Parameters:
6284754e4fbaSMatthew G. Knepley + dm       - The output `DM`
6285754e4fbaSMatthew G. Knepley . key      - The `PetscFormKey` array (left cell, right cell, cohesive cell) indicating what should be integrated
6286754e4fbaSMatthew G. Knepley . cellIS   - The `IS` give a set of cells to integrate over
6287754e4fbaSMatthew G. Knepley . t        - The time
6288754e4fbaSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with respect to $X_t$
6289754e4fbaSMatthew G. Knepley . locX     - The local solution
6290754e4fbaSMatthew G. Knepley . locX_t   - The time derivative of the local solution, or `NULL` for time-independent problems
6291754e4fbaSMatthew G. Knepley - user     - An optional user context, passed to the pointwise functions
6292754e4fbaSMatthew G. Knepley 
6293754e4fbaSMatthew G. Knepley   Output Parameters:
6294754e4fbaSMatthew G. Knepley + Jac  - The local Jacobian
6295754e4fbaSMatthew G. Knepley - JacP - The local Jacobian preconditioner
6296754e4fbaSMatthew G. Knepley 
6297754e4fbaSMatthew G. Knepley   Level: developer
6298754e4fbaSMatthew G. Knepley 
6299754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeResidualByKey()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `PetscFormKey`
6300754e4fbaSMatthew G. Knepley @*/
6301754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobianHybridByKey(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user)
6302d71ae5a4SJacob Faibussowitsch {
63033e9753d6SMatthew G. Knepley   DM_Plex        *mesh          = (DM_Plex *)dm->data;
63043e9753d6SMatthew G. Knepley   const char     *name          = "Hybrid Jacobian";
6305148442b3SMatthew G. Knepley   DM              dmAux[3]      = {NULL, NULL, NULL};
6306148442b3SMatthew G. Knepley   DMLabel         ghostLabel    = NULL;
63073e9753d6SMatthew G. Knepley   DM              plex          = NULL;
63083e9753d6SMatthew G. Knepley   DM              plexA         = NULL;
6309148442b3SMatthew G. Knepley   PetscDS         ds            = NULL;
631007218a29SMatthew G. Knepley   PetscDS         dsIn          = NULL;
6311148442b3SMatthew G. Knepley   PetscDS         dsAux[3]      = {NULL, NULL, NULL};
6312148442b3SMatthew G. Knepley   Vec             locA[3]       = {NULL, NULL, NULL};
631307218a29SMatthew G. Knepley   DM              dmScale[3]    = {NULL, NULL, NULL};
631407218a29SMatthew G. Knepley   PetscDS         dsScale[3]    = {NULL, NULL, NULL};
631507218a29SMatthew G. Knepley   Vec             locS[3]       = {NULL, NULL, NULL};
63163e9753d6SMatthew G. Knepley   PetscSection    section       = NULL;
6317148442b3SMatthew G. Knepley   PetscSection    sectionAux[3] = {NULL, NULL, NULL};
63183e9753d6SMatthew G. Knepley   DMField         coordField    = NULL;
631907218a29SMatthew G. Knepley   PetscScalar    *a[3]          = {NULL, NULL, NULL};
632007218a29SMatthew G. Knepley   PetscScalar    *s[3]          = {NULL, NULL, NULL};
632107218a29SMatthew G. Knepley   PetscScalar    *u             = NULL, *u_t;
632207218a29SMatthew G. Knepley   PetscScalar    *elemMatNeg, *elemMatPos, *elemMatCoh;
632307218a29SMatthew G. Knepley   PetscScalar    *elemMatNegP, *elemMatPosP, *elemMatCohP;
6324e432b41dSStefano Zampini   PetscSection    globalSection;
6325989fa639SBrad Aagaard   IS              chunkISF, chunkISN;
63263e9753d6SMatthew G. Knepley   const PetscInt *cells;
6327989fa639SBrad Aagaard   PetscInt       *faces, *neighbors;
63283e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
63293e2b0218SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk;
63301690c2aeSBarry Smith   PetscInt        maxDegree   = PETSC_INT_MAX;
6331989fa639SBrad Aagaard   PetscQuadrature affineQuadF = NULL, *quadsF = NULL;
6332989fa639SBrad Aagaard   PetscFEGeom    *affineGeomF = NULL, **geomsF = NULL;
6333989fa639SBrad Aagaard   PetscQuadrature affineQuadN = NULL;
6334989fa639SBrad Aagaard   PetscFEGeom    *affineGeomN = NULL;
6335e432b41dSStefano Zampini   PetscBool       hasBdJac, hasBdPrec;
63363e9753d6SMatthew G. Knepley 
63373e9753d6SMatthew G. Knepley   PetscFunctionBegin;
63383cc88e6aSStefano Zampini   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
63393cc88e6aSStefano Zampini   if (!cellIS) goto end;
6340437e83fbSMatthew G. Knepley   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
6341437e83fbSMatthew G. Knepley   PetscCall(ISGetLocalSize(cellIS, &numCells));
63423cc88e6aSStefano Zampini   if (cStart >= cEnd) goto end;
63435fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
63445fedec97SMatthew G. Knepley     const char *name;
63459566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
634663a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
63475fedec97SMatthew G. Knepley   }
63489566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
6349b98a7184SJames Wright   PetscCall(DMGetLocalSection(dm, &section));
63509566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
63519566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
635207218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn));
63539566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
63549566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
635507218a29SMatthew G. Knepley   PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn));
63569566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac));
63579566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec));
63589566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
6359148442b3SMatthew G. Knepley   if (locA[2]) {
63601059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
63611059d808SMatthew G. Knepley 
63629566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
63639566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA));
6364b98a7184SJames Wright     PetscCall(DMGetLocalSection(dmAux[2], &sectionAux[2]));
636507218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL));
63669566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
6367148442b3SMatthew G. Knepley     {
6368148442b3SMatthew G. Knepley       const PetscInt *cone;
6369148442b3SMatthew G. Knepley       PetscInt        c;
6370148442b3SMatthew G. Knepley 
63711059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
6372148442b3SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
6373148442b3SMatthew G. Knepley         const PetscInt *support;
6374148442b3SMatthew G. Knepley         PetscInt        ssize, s;
6375148442b3SMatthew G. Knepley 
63769566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
63779566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
63781059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
63791059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
63801059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
63811059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
63829566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
63839566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
6384ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
638507218a29SMatthew G. Knepley         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL));
63869566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
6387148442b3SMatthew G. Knepley       }
6388148442b3SMatthew G. Knepley     }
63893e9753d6SMatthew G. Knepley   }
639007218a29SMatthew G. Knepley   /* Handle mass matrix scaling
639107218a29SMatthew G. Knepley        The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */
639207218a29SMatthew G. Knepley   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2]));
639307218a29SMatthew G. Knepley   if (locS[2]) {
63943e2b0218SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
639507218a29SMatthew G. Knepley     PetscInt       Nb, Nbs;
639607218a29SMatthew G. Knepley 
639707218a29SMatthew G. Knepley     PetscCall(VecGetDM(locS[2], &dmScale[2]));
639807218a29SMatthew G. Knepley     PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL));
63993e2b0218SMatthew G. Knepley     PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2]));
640007218a29SMatthew G. Knepley     // BRAD: This is not set correctly
640107218a29SMatthew G. Knepley     key[2].field = 2;
640207218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb));
640307218a29SMatthew G. Knepley     PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs));
640407218a29SMatthew G. Knepley     PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs);
64053e2b0218SMatthew G. Knepley     {
64063e2b0218SMatthew G. Knepley       const PetscInt *cone;
64073e2b0218SMatthew G. Knepley       PetscInt        c;
64083e2b0218SMatthew G. Knepley 
64093e2b0218SMatthew G. Knepley       locS[1] = locS[0] = locS[2];
64103e2b0218SMatthew G. Knepley       dmScale[1] = dmScale[0] = dmScale[2];
64113e2b0218SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
64123e2b0218SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
64133e2b0218SMatthew G. Knepley         const PetscInt *support;
64143e2b0218SMatthew G. Knepley         PetscInt        ssize, s;
64153e2b0218SMatthew G. Knepley 
64163e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
64173e2b0218SMatthew G. Knepley         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
64183e2b0218SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
64193e2b0218SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
64203e2b0218SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
64213e2b0218SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
64223e2b0218SMatthew G. Knepley         PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL));
64233e2b0218SMatthew G. Knepley         PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c]));
64243e2b0218SMatthew G. Knepley       }
64253e2b0218SMatthew G. Knepley     }
642607218a29SMatthew G. Knepley   }
642707218a29SMatthew G. Knepley   /* 2: Setup geometric data */
64289566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
64299566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
64303e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
64313e9753d6SMatthew G. Knepley     PetscInt f;
6432989fa639SBrad Aagaard     PetscCall(PetscCalloc2(Nf, &quadsF, Nf, &geomsF));
64333e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
64343e9753d6SMatthew G. Knepley       PetscFE fe;
64353e9753d6SMatthew G. Knepley 
64369566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
64373e9753d6SMatthew G. Knepley       if (fe) {
6438989fa639SBrad Aagaard         PetscCall(PetscFEGetQuadrature(fe, &quadsF[f]));
6439989fa639SBrad Aagaard         PetscCall(PetscObjectReference((PetscObject)quadsF[f]));
64403e9753d6SMatthew G. Knepley       }
64413e9753d6SMatthew G. Knepley     }
64423e9753d6SMatthew G. Knepley   }
644307218a29SMatthew G. Knepley   /* Loop over chunks */
64443e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
64453e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
6446989fa639SBrad Aagaard   PetscCall(PetscCalloc2(2 * cellChunkSize, &faces, 2 * cellChunkSize, &neighbors));
6447989fa639SBrad Aagaard   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkISF));
6448989fa639SBrad Aagaard   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, neighbors, PETSC_USE_POINTER, &chunkISN));
644907218a29SMatthew G. Knepley   /* Extract field coefficients */
645007218a29SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
645107218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
645207218a29SMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
64538bf0a22dSMatthew G. Knepley   PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s));
645407218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
645507218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
645607218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
645707218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
645807218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
645907218a29SMatthew G. Knepley   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
64603e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
64613e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
64623e9753d6SMatthew G. Knepley 
646307218a29SMatthew G. Knepley     if (hasBdJac) {
646407218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim));
646507218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim));
646607218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim));
646707218a29SMatthew G. Knepley     }
646807218a29SMatthew G. Knepley     if (hasBdPrec) {
646907218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim));
647007218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim));
647107218a29SMatthew G. Knepley       PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim));
647207218a29SMatthew G. Knepley     }
64733e9753d6SMatthew G. Knepley     /* Get faces */
64743e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
64753e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
6476989fa639SBrad Aagaard       const PetscInt *cone, *support;
64779566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(plex, cell, &cone));
647807218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 0] = cone[0];
647907218a29SMatthew G. Knepley       faces[(c - cS) * 2 + 1] = cone[1];
6480989fa639SBrad Aagaard       PetscCall(DMPlexGetSupport(dm, cone[0], &support));
6481989fa639SBrad Aagaard       neighbors[(c - cS) * 2 + 0] = support[0] == cell ? support[1] : support[0];
6482989fa639SBrad Aagaard       PetscCall(DMPlexGetSupport(dm, cone[1], &support));
6483989fa639SBrad Aagaard       neighbors[(c - cS) * 2 + 1] = support[0] == cell ? support[1] : support[0];
64843e9753d6SMatthew G. Knepley     }
6485989fa639SBrad Aagaard     PetscCall(ISGeneralSetIndices(chunkISF, 2 * cellChunkSize, faces, PETSC_USE_POINTER));
6486989fa639SBrad Aagaard     PetscCall(ISGeneralSetIndices(chunkISN, 2 * cellChunkSize, neighbors, PETSC_USE_POINTER));
64873e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
6488989fa639SBrad Aagaard       if (!affineQuadF) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkISF, &affineQuadF));
6489989fa639SBrad Aagaard       if (affineQuadF) PetscCall(DMSNESGetFEGeom(coordField, chunkISF, affineQuadF, PETSC_FEGEOM_COHESIVE, &affineGeomF));
6490989fa639SBrad Aagaard       if (!affineQuadN) {
6491989fa639SBrad Aagaard         PetscInt dim;
6492989fa639SBrad Aagaard         PetscCall(PetscQuadratureGetData(affineQuadF, &dim, NULL, NULL, NULL, NULL));
6493989fa639SBrad Aagaard         PetscCall(DMFieldCreateDefaultFaceQuadrature(coordField, chunkISN, &affineQuadN));
6494989fa639SBrad Aagaard         PetscCall(PetscQuadratureSetData(affineQuadN, dim + 1, PETSC_DECIDE, PETSC_DECIDE, NULL, NULL));
6495989fa639SBrad Aagaard       }
6496989fa639SBrad Aagaard       if (affineQuadN) PetscCall(DMSNESGetFEGeom(coordField, chunkISN, affineQuadN, PETSC_FEGEOM_BASIC, &affineGeomN));
64973e9753d6SMatthew G. Knepley     } else {
64983e9753d6SMatthew G. Knepley       PetscInt f;
64993e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
6500989fa639SBrad Aagaard         if (quadsF[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkISF, quadsF[f], PETSC_FEGEOM_COHESIVE, &geomsF[f]));
65013e9753d6SMatthew G. Knepley       }
65023e9753d6SMatthew G. Knepley     }
65033e9753d6SMatthew G. Knepley 
65043e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
65053e9753d6SMatthew G. Knepley       PetscFE         feI;
6506989fa639SBrad Aagaard       PetscFEGeom    *geomF      = affineGeomF ? affineGeomF : geomsF[fieldI];
6507989fa639SBrad Aagaard       PetscFEGeom    *chunkGeomF = NULL, *remGeomF = NULL;
6508989fa639SBrad Aagaard       PetscFEGeom    *geomN      = affineGeomN ? affineGeomN : geomsF[fieldI];
6509989fa639SBrad Aagaard       PetscFEGeom    *chunkGeomN = NULL, *remGeomN = NULL;
6510989fa639SBrad Aagaard       PetscQuadrature quadF = affineQuadF ? affineQuadF : quadsF[fieldI];
65113e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
65125fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
65133e9753d6SMatthew G. Knepley 
65149566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI));
65153e9753d6SMatthew G. Knepley       if (!feI) continue;
65169566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches));
6517989fa639SBrad Aagaard       PetscCall(PetscQuadratureGetData(quadF, NULL, NULL, &Nq, NULL, NULL));
65189566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feI, &Nb));
65193e9753d6SMatthew G. Knepley       blockSize = Nb;
65203e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
65219566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches));
65223e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
65233e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
65243e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
65253e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
6526989fa639SBrad Aagaard       PetscCall(PetscFEGeomGetChunk(geomF, 0, offset * 2, &chunkGeomF));
6527989fa639SBrad Aagaard       PetscCall(PetscFEGeomGetChunk(geomF, offset * 2, numCells * 2, &remGeomF));
6528989fa639SBrad Aagaard       PetscCall(PetscFEGeomGetChunk(geomN, 0, offset * 2, &chunkGeomN));
6529989fa639SBrad Aagaard       PetscCall(PetscFEGeomGetChunk(geomN, offset * 2, numCells * 2, &remGeomN));
65309566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField));
65313e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
65323e9753d6SMatthew G. Knepley         PetscFE feJ;
65333e9753d6SMatthew G. Knepley 
65349566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ));
65353e9753d6SMatthew G. Knepley         if (!feJ) continue;
6536148442b3SMatthew G. Knepley         key[0].field = fieldI * Nf + fieldJ;
6537148442b3SMatthew G. Knepley         key[1].field = fieldI * Nf + fieldJ;
65385fedec97SMatthew G. Knepley         key[2].field = fieldI * Nf + fieldJ;
6539148442b3SMatthew G. Knepley         if (hasBdJac) {
6540989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg));
6541989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, X_tShift, &elemMatNeg[offset * totDim * totDim]));
6542989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos));
6543989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, X_tShift, &elemMatPos[offset * totDim * totDim]));
6544148442b3SMatthew G. Knepley         }
6545148442b3SMatthew G. Knepley         if (hasBdPrec) {
6546989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP));
6547989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim]));
6548989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP));
6549989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim]));
6550148442b3SMatthew G. Knepley         }
65515fedec97SMatthew G. Knepley         if (hasBdJac) {
6552989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh));
6553989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, X_tShift, &elemMatCoh[offset * totDim * totDim]));
6554148442b3SMatthew G. Knepley         }
65555fedec97SMatthew G. Knepley         if (hasBdPrec) {
6556989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP));
6557989fa639SBrad Aagaard           PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim]));
65583e9753d6SMatthew G. Knepley         }
65593e9753d6SMatthew G. Knepley       }
6560989fa639SBrad Aagaard       PetscCall(PetscFEGeomRestoreChunk(geomF, offset, numCells, &remGeomF));
6561989fa639SBrad Aagaard       PetscCall(PetscFEGeomRestoreChunk(geomF, 0, offset, &chunkGeomF));
6562989fa639SBrad Aagaard       PetscCall(PetscFEGeomRestoreChunk(geomN, offset, numCells, &remGeomN));
6563989fa639SBrad Aagaard       PetscCall(PetscFEGeomRestoreChunk(geomN, 0, offset, &chunkGeomN));
65643e9753d6SMatthew G. Knepley     }
65653e9753d6SMatthew G. Knepley     /* Insert values into matrix */
65663e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
65673e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
656807218a29SMatthew G. Knepley       const PetscInt cind = c - cS, coff = cind * totDim * totDim;
656907218a29SMatthew G. Knepley       PetscInt       i, j;
65703e9753d6SMatthew G. Knepley 
657107218a29SMatthew G. Knepley       /* Scale element values */
657207218a29SMatthew G. Knepley       if (locS[0]) {
65733e2b0218SMatthew G. Knepley         PetscInt  Nb, soff = cind * totDimScale[0], off = 0;
657407218a29SMatthew G. Knepley         PetscBool cohesive;
657507218a29SMatthew G. Knepley 
657607218a29SMatthew G. Knepley         for (fieldI = 0; fieldI < Nf; ++fieldI) {
657707218a29SMatthew G. Knepley           PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb));
657807218a29SMatthew G. Knepley           PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive));
657907218a29SMatthew G. Knepley 
658007218a29SMatthew G. Knepley           if (fieldI == key[2].field) {
658107218a29SMatthew G. Knepley             PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields");
65828bf0a22dSMatthew G. Knepley             for (i = 0; i < Nb; ++i) {
658307218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j];
65848bf0a22dSMatthew G. Knepley               if (hasBdPrec)
65858bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNegP[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPosP[coff + (off + i) * totDim + j];
65868bf0a22dSMatthew G. Knepley             }
658707218a29SMatthew G. Knepley             off += Nb;
658807218a29SMatthew G. Knepley           } else {
658907218a29SMatthew G. Knepley             const PetscInt N = cohesive ? Nb : Nb * 2;
659007218a29SMatthew G. Knepley 
65918bf0a22dSMatthew G. Knepley             for (i = 0; i < N; ++i) {
659207218a29SMatthew G. Knepley               for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j];
65938bf0a22dSMatthew G. Knepley               if (hasBdPrec)
65948bf0a22dSMatthew G. Knepley                 for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += elemMatNegP[coff + (off + i) * totDim + j] + elemMatPosP[coff + (off + i) * totDim + j];
65958bf0a22dSMatthew G. Knepley             }
659607218a29SMatthew G. Knepley             off += N;
659707218a29SMatthew G. Knepley           }
659807218a29SMatthew G. Knepley         }
659907218a29SMatthew G. Knepley       } else {
660007218a29SMatthew G. Knepley         for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i];
66018bf0a22dSMatthew G. Knepley         if (hasBdPrec)
66028bf0a22dSMatthew G. Knepley           for (i = 0; i < totDim * totDim; ++i) elemMatCohP[coff + i] += elemMatNegP[coff + i] + elemMatPosP[coff + i];
660307218a29SMatthew G. Knepley       }
66043e9753d6SMatthew G. Knepley       if (hasBdPrec) {
66053e9753d6SMatthew G. Knepley         if (hasBdJac) {
660607218a29SMatthew G. Knepley           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
6607e8e188d2SZach Atkins           PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
66083e9753d6SMatthew G. Knepley         }
660907218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim]));
661007218a29SMatthew G. Knepley         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES));
66113e9753d6SMatthew G. Knepley       } else if (hasBdJac) {
661207218a29SMatthew G. Knepley         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim]));
6613e8e188d2SZach Atkins         PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES));
66143e9753d6SMatthew G. Knepley       }
66153e9753d6SMatthew G. Knepley     }
66163e9753d6SMatthew G. Knepley   }
66179566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
661807218a29SMatthew G. Knepley   PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a));
661907218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg));
662007218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos));
662107218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh));
662207218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP));
662307218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP));
662407218a29SMatthew G. Knepley   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP));
6625989fa639SBrad Aagaard   PetscCall(PetscFree2(faces, neighbors));
6626989fa639SBrad Aagaard   PetscCall(ISDestroy(&chunkISF));
6627989fa639SBrad Aagaard   PetscCall(ISDestroy(&chunkISN));
66289566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
66293e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
6630989fa639SBrad Aagaard     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuadF, PETSC_FALSE, &affineGeomF));
6631989fa639SBrad Aagaard     PetscCall(PetscQuadratureDestroy(&affineQuadF));
6632989fa639SBrad Aagaard     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuadN, PETSC_FALSE, &affineGeomN));
6633989fa639SBrad Aagaard     PetscCall(PetscQuadratureDestroy(&affineQuadN));
66343e9753d6SMatthew G. Knepley   } else {
66353e9753d6SMatthew G. Knepley     PetscInt f;
66363e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
6637989fa639SBrad Aagaard       if (geomsF) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quadsF[f], PETSC_FALSE, &geomsF[f]));
6638989fa639SBrad Aagaard       if (quadsF) PetscCall(PetscQuadratureDestroy(&quadsF[f]));
66393e9753d6SMatthew G. Knepley     }
6640989fa639SBrad Aagaard     PetscCall(PetscFree2(quadsF, geomsF));
66413e9753d6SMatthew G. Knepley   }
66429566063dSJacob Faibussowitsch   if (dmAux[2]) PetscCall(DMDestroy(&plexA));
66439566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
66443cc88e6aSStefano Zampini end:
66459566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
66463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66473e9753d6SMatthew G. Knepley }
66488e3a2eefSMatthew G. Knepley 
6649754e4fbaSMatthew G. Knepley /*@
6650754e4fbaSMatthew G. Knepley   DMPlexComputeJacobianActionByKey - Compute the local Jacobian for terms matching the input key
6651754e4fbaSMatthew G. Knepley 
6652754e4fbaSMatthew G. Knepley   Collective
66538e3a2eefSMatthew G. Knepley 
66548e3a2eefSMatthew G. Knepley   Input Parameters:
6655754e4fbaSMatthew G. Knepley + dm       - The output `DM`
6656754e4fbaSMatthew G. Knepley . key      - The `PetscFormKey` indicating what should be integrated
6657754e4fbaSMatthew G. Knepley . cellIS   - The `IS` give a set of cells to integrate over
66588e3a2eefSMatthew G. Knepley . t        - The time
6659754e4fbaSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with respect to $X_t$
6660754e4fbaSMatthew G. Knepley . locX     - The local solution
6661754e4fbaSMatthew G. Knepley . locX_t   - The time derivative of the local solution, or `NULL` for time-independent problems
6662754e4fbaSMatthew G. Knepley . locY     - The local vector acted on by J
6663754e4fbaSMatthew G. Knepley - user     - An optional user context, passed to the pointwise functions
66648e3a2eefSMatthew G. Knepley 
66658e3a2eefSMatthew G. Knepley   Output Parameter:
6666754e4fbaSMatthew G. Knepley . locF - The local residual F = J(X) Y
66678e3a2eefSMatthew G. Knepley 
6668754e4fbaSMatthew G. Knepley   Level: developer
6669754e4fbaSMatthew G. Knepley 
6670754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeResidualByKey()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey`
6671754e4fbaSMatthew G. Knepley @*/
6672754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobianActionByKey(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Vec locY, Vec locF, void *user)
6673d71ae5a4SJacob Faibussowitsch {
66748e3a2eefSMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
66758e3a2eefSMatthew G. Knepley   const char     *name  = "Jacobian";
66768e3a2eefSMatthew G. Knepley   DM              dmAux = NULL, plex, plexAux = NULL;
66778e3a2eefSMatthew G. Knepley   DMEnclosureType encAux;
66788e3a2eefSMatthew G. Knepley   Vec             A;
66798e3a2eefSMatthew G. Knepley   DMField         coordField;
66808e3a2eefSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
66818e3a2eefSMatthew G. Knepley   PetscQuadrature quad;
66828e3a2eefSMatthew G. Knepley   PetscSection    section, globalSection, sectionAux;
66838e3a2eefSMatthew G. Knepley   PetscScalar    *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z;
66848e3a2eefSMatthew G. Knepley   const PetscInt *cells;
66858e3a2eefSMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
66868e3a2eefSMatthew G. Knepley   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
66878e3a2eefSMatthew G. Knepley   PetscBool       hasDyn;
66888e3a2eefSMatthew G. Knepley 
66898e3a2eefSMatthew G. Knepley   PetscFunctionBegin;
66909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
66919566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
66929566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
66939566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
66949566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
66959566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
669607218a29SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL));
66979566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
66989566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
66999566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
67008e3a2eefSMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
67019566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
67028e3a2eefSMatthew G. Knepley   if (A) {
67039566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
67049566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
67059566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexAux));
67069566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexAux, &sectionAux));
67079566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
67089566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
67098e3a2eefSMatthew G. Knepley   }
6710754e4fbaSMatthew G. Knepley   PetscCall(VecSet(locF, 0.0));
6711754e4fbaSMatthew G. Knepley   PetscCall(PetscMalloc6(numCells * totDim, &u, (locX_t ? (size_t)numCells * totDim : 0), &u_t, numCells * totDim * totDim, &elemMat, (hasDyn ? (size_t)numCells * totDim * totDim : 0), &elemMatD, numCells * totDim, &y, totDim, &z));
67129566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
67139566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
67148e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
67158e3a2eefSMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
67168e3a2eefSMatthew G. Knepley     const PetscInt cind = c - cStart;
67178e3a2eefSMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
67188e3a2eefSMatthew G. Knepley     PetscInt       i;
67198e3a2eefSMatthew G. Knepley 
6720754e4fbaSMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x));
67218e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
6722754e4fbaSMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x));
6723754e4fbaSMatthew G. Knepley     if (locX_t) {
6724754e4fbaSMatthew G. Knepley       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
67258e3a2eefSMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
6726754e4fbaSMatthew G. Knepley       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
67278e3a2eefSMatthew G. Knepley     }
67288e3a2eefSMatthew G. Knepley     if (dmAux) {
67298e3a2eefSMatthew G. Knepley       PetscInt subcell;
67309566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
67319566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x));
67328e3a2eefSMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
67339566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x));
67348e3a2eefSMatthew G. Knepley     }
6735754e4fbaSMatthew G. Knepley     PetscCall(DMPlexVecGetClosure(plex, section, locY, cell, NULL, &x));
67368e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i];
6737754e4fbaSMatthew G. Knepley     PetscCall(DMPlexVecRestoreClosure(plex, section, locY, cell, NULL, &x));
67388e3a2eefSMatthew G. Knepley   }
67399566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
67409566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
67418e3a2eefSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
67428e3a2eefSMatthew G. Knepley     PetscFE  fe;
67438e3a2eefSMatthew G. Knepley     PetscInt Nb;
67448e3a2eefSMatthew G. Knepley     /* Conforming batches */
67458e3a2eefSMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
67468e3a2eefSMatthew G. Knepley     /* Remainder */
67478e3a2eefSMatthew G. Knepley     PetscInt        Nr, offset, Nq;
67488e3a2eefSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
67498e3a2eefSMatthew G. Knepley     PetscInt        maxDegree;
67508e3a2eefSMatthew G. Knepley     PetscFEGeom    *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
67518e3a2eefSMatthew G. Knepley 
67529566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
67539566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
67549566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
67559566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
67569566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
67579566063dSJacob Faibussowitsch     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
67588e3a2eefSMatthew G. Knepley     if (!qGeom) {
67599566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
67609566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
67618e3a2eefSMatthew G. Knepley     }
67629566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
6763ac9d17c7SMatthew G. Knepley     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FEGEOM_BASIC, &cgeomFEM));
67648e3a2eefSMatthew G. Knepley     blockSize = Nb;
67658e3a2eefSMatthew G. Knepley     batchSize = numBlocks * blockSize;
67669566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
67678e3a2eefSMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
67688e3a2eefSMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
67698e3a2eefSMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
67708e3a2eefSMatthew G. Knepley     offset    = numCells - Nr;
67719566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
67729566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
67738e3a2eefSMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
67748e3a2eefSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
67759566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
67768e3a54c0SPierre Jolivet       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim]));
67778e3a2eefSMatthew G. Knepley       if (hasDyn) {
67789566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
67798e3a54c0SPierre Jolivet         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
67808e3a2eefSMatthew G. Knepley       }
67818e3a2eefSMatthew G. Knepley     }
67829566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
67839566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
67849566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
67859566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
67868e3a2eefSMatthew G. Knepley   }
67878e3a2eefSMatthew G. Knepley   if (hasDyn) {
67888e3a2eefSMatthew G. Knepley     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
67898e3a2eefSMatthew G. Knepley   }
67908e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
67918e3a2eefSMatthew G. Knepley     const PetscInt     cell = cells ? cells[c] : c;
67928e3a2eefSMatthew G. Knepley     const PetscInt     cind = c - cStart;
67936497c311SBarry Smith     const PetscBLASInt one  = 1;
67946497c311SBarry Smith     PetscBLASInt       M;
67958e3a2eefSMatthew G. Knepley     const PetscScalar  a = 1.0, b = 0.0;
67968e3a2eefSMatthew G. Knepley 
67976497c311SBarry Smith     PetscCall(PetscBLASIntCast(totDim, &M));
6798792fecdfSBarry Smith     PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one));
67998e3a2eefSMatthew G. Knepley     if (mesh->printFEM > 1) {
68009566063dSJacob Faibussowitsch       PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
68019566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim]));
68029566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Z", totDim, z));
68038e3a2eefSMatthew G. Knepley     }
6804754e4fbaSMatthew G. Knepley     PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, z, ADD_VALUES));
68058e3a2eefSMatthew G. Knepley   }
68069566063dSJacob Faibussowitsch   PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z));
68078e3a2eefSMatthew G. Knepley   if (mesh->printFEM) {
6808754e4fbaSMatthew G. Knepley     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)locF), "Z:\n"));
6809754e4fbaSMatthew G. Knepley     PetscCall(VecView(locF, NULL));
68108e3a2eefSMatthew G. Knepley   }
68111059d808SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
68129566063dSJacob Faibussowitsch   PetscCall(PetscFree(a));
68139566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexAux));
68149566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
68159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
68163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
68178e3a2eefSMatthew G. Knepley }
6818d52c2f21SMatthew G. Knepley 
6819d52c2f21SMatthew G. Knepley static void f0_1(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
6820d52c2f21SMatthew G. Knepley {
6821d52c2f21SMatthew G. Knepley   f0[0] = u[0];
6822d52c2f21SMatthew G. Knepley }
6823d52c2f21SMatthew G. Knepley 
6824d52c2f21SMatthew G. Knepley static void f0_x(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
6825d52c2f21SMatthew G. Knepley {
6826d52c2f21SMatthew G. Knepley   f0[0] = x[(int)PetscRealPart(constants[0])] * u[0];
6827d52c2f21SMatthew G. Knepley }
6828d52c2f21SMatthew G. Knepley 
6829d52c2f21SMatthew G. Knepley static void f0_x2(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
6830d52c2f21SMatthew G. Knepley {
6831d52c2f21SMatthew G. Knepley   PetscInt d;
6832d52c2f21SMatthew G. Knepley 
6833d52c2f21SMatthew G. Knepley   f0[0] = 0.0;
6834d52c2f21SMatthew G. Knepley   for (d = 0; d < dim; ++d) f0[0] += PetscSqr(x[d]) * u[0];
6835d52c2f21SMatthew G. Knepley }
6836d52c2f21SMatthew G. Knepley 
6837d52c2f21SMatthew G. Knepley /*@
6838d52c2f21SMatthew G. Knepley   DMPlexComputeMoments - Compute the first three moments for a field
6839d52c2f21SMatthew G. Knepley 
6840d52c2f21SMatthew G. Knepley   Noncollective
6841d52c2f21SMatthew G. Knepley 
6842d52c2f21SMatthew G. Knepley   Input Parameters:
6843d52c2f21SMatthew G. Knepley + dm - the `DMPLEX`
6844d52c2f21SMatthew G. Knepley - u  - the field
6845d52c2f21SMatthew G. Knepley 
6846d52c2f21SMatthew G. Knepley   Output Parameter:
6847d52c2f21SMatthew G. Knepley . moments - the field moments
6848d52c2f21SMatthew G. Knepley 
6849d52c2f21SMatthew G. Knepley   Level: intermediate
6850d52c2f21SMatthew G. Knepley 
6851d52c2f21SMatthew G. Knepley   Note:
685217314648SMatthew G. Knepley   The `moments` array should be of length cdim + 2, where cdim is the number of components for the coordinate field.
6853d52c2f21SMatthew G. Knepley 
6854d52c2f21SMatthew G. Knepley .seealso: `DM`, `DMPLEX`, `DMSwarmComputeMoments()`
6855d52c2f21SMatthew G. Knepley @*/
6856d52c2f21SMatthew G. Knepley PetscErrorCode DMPlexComputeMoments(DM dm, Vec u, PetscReal moments[])
6857d52c2f21SMatthew G. Knepley {
6858d52c2f21SMatthew G. Knepley   PetscDS            ds;
6859d52c2f21SMatthew G. Knepley   PetscScalar        mom, constants[1];
6860d52c2f21SMatthew G. Knepley   const PetscScalar *oldConstants;
686117314648SMatthew G. Knepley   PetscInt           cdim, Nf, field = 0, Ncon;
6862d52c2f21SMatthew G. Knepley   MPI_Comm           comm;
6863d52c2f21SMatthew G. Knepley   void              *user;
6864d52c2f21SMatthew G. Knepley 
6865d52c2f21SMatthew G. Knepley   PetscFunctionBeginUser;
6866d52c2f21SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
686717314648SMatthew G. Knepley   PetscCall(DMGetCoordinateDim(dm, &cdim));
6868d52c2f21SMatthew G. Knepley   PetscCall(DMGetApplicationContext(dm, &user));
6869d52c2f21SMatthew G. Knepley   PetscCall(DMGetDS(dm, &ds));
6870d52c2f21SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(ds, &Nf));
6871d52c2f21SMatthew G. Knepley   PetscCall(PetscDSGetConstants(ds, &Ncon, &oldConstants));
6872d52c2f21SMatthew G. Knepley   PetscCheck(Nf == 1, comm, PETSC_ERR_ARG_WRONG, "We currently only support 1 field, not %" PetscInt_FMT, Nf);
6873d52c2f21SMatthew G. Knepley   PetscCall(PetscDSSetObjective(ds, field, &f0_1));
6874d52c2f21SMatthew G. Knepley   PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user));
6875d52c2f21SMatthew G. Knepley   moments[0] = PetscRealPart(mom);
687617314648SMatthew G. Knepley   for (PetscInt c = 0; c < cdim; ++c) {
6877d52c2f21SMatthew G. Knepley     constants[0] = c;
687817314648SMatthew G. Knepley     PetscCall(PetscDSSetConstants(ds, 1, constants));
6879d52c2f21SMatthew G. Knepley     PetscCall(PetscDSSetObjective(ds, field, &f0_x));
6880d52c2f21SMatthew G. Knepley     PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user));
6881d52c2f21SMatthew G. Knepley     moments[c + 1] = PetscRealPart(mom);
6882d52c2f21SMatthew G. Knepley   }
6883d52c2f21SMatthew G. Knepley   PetscCall(PetscDSSetObjective(ds, field, &f0_x2));
6884d52c2f21SMatthew G. Knepley   PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user));
688517314648SMatthew G. Knepley   moments[cdim + 1] = PetscRealPart(mom);
6886d52c2f21SMatthew G. Knepley   PetscCall(PetscDSSetConstants(ds, Ncon, (PetscScalar *)oldConstants));
6887d52c2f21SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6888d52c2f21SMatthew G. Knepley }
6889