1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 4af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 5af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 6a0845e3aSMatthew G. Knepley 7cb1e1211SMatthew G Knepley #undef __FUNCT__ 8cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexGetScale" 9cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 10cb1e1211SMatthew G Knepley { 11cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 12cb1e1211SMatthew G Knepley 13cb1e1211SMatthew G Knepley PetscFunctionBegin; 14cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15cb1e1211SMatthew G Knepley PetscValidPointer(scale, 3); 16cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 17cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 18cb1e1211SMatthew G Knepley } 19cb1e1211SMatthew G Knepley 20cb1e1211SMatthew G Knepley #undef __FUNCT__ 21cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexSetScale" 22cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 23cb1e1211SMatthew G Knepley { 24cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 25cb1e1211SMatthew G Knepley 26cb1e1211SMatthew G Knepley PetscFunctionBegin; 27cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 29cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 30cb1e1211SMatthew G Knepley } 31cb1e1211SMatthew G Knepley 32cb1e1211SMatthew G Knepley PETSC_STATIC_INLINE PetscInt epsilon(PetscInt i, PetscInt j, PetscInt k) 33cb1e1211SMatthew G Knepley { 34cb1e1211SMatthew G Knepley switch (i) { 35cb1e1211SMatthew G Knepley case 0: 36cb1e1211SMatthew G Knepley switch (j) { 37cb1e1211SMatthew G Knepley case 0: return 0; 38cb1e1211SMatthew G Knepley case 1: 39cb1e1211SMatthew G Knepley switch (k) { 40cb1e1211SMatthew G Knepley case 0: return 0; 41cb1e1211SMatthew G Knepley case 1: return 0; 42cb1e1211SMatthew G Knepley case 2: return 1; 43cb1e1211SMatthew G Knepley } 44cb1e1211SMatthew G Knepley case 2: 45cb1e1211SMatthew G Knepley switch (k) { 46cb1e1211SMatthew G Knepley case 0: return 0; 47cb1e1211SMatthew G Knepley case 1: return -1; 48cb1e1211SMatthew G Knepley case 2: return 0; 49cb1e1211SMatthew G Knepley } 50cb1e1211SMatthew G Knepley } 51cb1e1211SMatthew G Knepley case 1: 52cb1e1211SMatthew G Knepley switch (j) { 53cb1e1211SMatthew G Knepley case 0: 54cb1e1211SMatthew G Knepley switch (k) { 55cb1e1211SMatthew G Knepley case 0: return 0; 56cb1e1211SMatthew G Knepley case 1: return 0; 57cb1e1211SMatthew G Knepley case 2: return -1; 58cb1e1211SMatthew G Knepley } 59cb1e1211SMatthew G Knepley case 1: return 0; 60cb1e1211SMatthew G Knepley case 2: 61cb1e1211SMatthew G Knepley switch (k) { 62cb1e1211SMatthew G Knepley case 0: return 1; 63cb1e1211SMatthew G Knepley case 1: return 0; 64cb1e1211SMatthew G Knepley case 2: return 0; 65cb1e1211SMatthew G Knepley } 66cb1e1211SMatthew G Knepley } 67cb1e1211SMatthew G Knepley case 2: 68cb1e1211SMatthew G Knepley switch (j) { 69cb1e1211SMatthew G Knepley case 0: 70cb1e1211SMatthew G Knepley switch (k) { 71cb1e1211SMatthew G Knepley case 0: return 0; 72cb1e1211SMatthew G Knepley case 1: return 1; 73cb1e1211SMatthew G Knepley case 2: return 0; 74cb1e1211SMatthew G Knepley } 75cb1e1211SMatthew G Knepley case 1: 76cb1e1211SMatthew G Knepley switch (k) { 77cb1e1211SMatthew G Knepley case 0: return -1; 78cb1e1211SMatthew G Knepley case 1: return 0; 79cb1e1211SMatthew G Knepley case 2: return 0; 80cb1e1211SMatthew G Knepley } 81cb1e1211SMatthew G Knepley case 2: return 0; 82cb1e1211SMatthew G Knepley } 83cb1e1211SMatthew G Knepley } 84cb1e1211SMatthew G Knepley return 0; 85cb1e1211SMatthew G Knepley } 86cb1e1211SMatthew G Knepley 87cb1e1211SMatthew G Knepley #undef __FUNCT__ 88026175e5SToby Isaac #define __FUNCT__ "DMPlexProjectRigidBody" 890163fd50SMatthew G. Knepley static PetscErrorCode DMPlexProjectRigidBody(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nf, PetscScalar *mode, void *ctx) 90026175e5SToby Isaac { 91026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *) ctx; 92ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 93026175e5SToby Isaac PetscInt d = ctxInt[1]; 94026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 95026175e5SToby Isaac 96ad917190SMatthew G. Knepley PetscFunctionBegin; 97ad917190SMatthew G. Knepley if (dim != dim2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %d does not match context dimension %d", dim, dim2); 98026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 99026175e5SToby Isaac if (d < dim) { 100026175e5SToby Isaac mode[d] = 1.; 101ad917190SMatthew G. Knepley } else { 102026175e5SToby Isaac for (i = 0; i < dim; i++) { 103026175e5SToby Isaac for (j = 0; j < dim; j++) { 104026175e5SToby Isaac mode[j] += epsilon(i, j, k)*X[i]; 105026175e5SToby Isaac } 106026175e5SToby Isaac } 107026175e5SToby Isaac } 108ad917190SMatthew G. Knepley PetscFunctionReturn(0); 109026175e5SToby Isaac } 110026175e5SToby Isaac 111026175e5SToby Isaac #undef __FUNCT__ 112cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexCreateRigidBody" 113cb1e1211SMatthew G Knepley /*@C 114026175e5SToby Isaac DMPlexCreateRigidBody - for the default global section, create rigid body modes from coordinates 115cb1e1211SMatthew G Knepley 116cb1e1211SMatthew G Knepley Collective on DM 117cb1e1211SMatthew G Knepley 118cb1e1211SMatthew G Knepley Input Arguments: 119026175e5SToby Isaac . dm - the DM 120cb1e1211SMatthew G Knepley 121cb1e1211SMatthew G Knepley Output Argument: 122cb1e1211SMatthew G Knepley . sp - the null space 123cb1e1211SMatthew G Knepley 124cb1e1211SMatthew G Knepley Note: This is necessary to take account of Dirichlet conditions on the displacements 125cb1e1211SMatthew G Knepley 126cb1e1211SMatthew G Knepley Level: advanced 127cb1e1211SMatthew G Knepley 128cb1e1211SMatthew G Knepley .seealso: MatNullSpaceCreate() 129cb1e1211SMatthew G Knepley @*/ 130026175e5SToby Isaac PetscErrorCode DMPlexCreateRigidBody(DM dm, MatNullSpace *sp) 131cb1e1211SMatthew G Knepley { 132cb1e1211SMatthew G Knepley MPI_Comm comm; 133026175e5SToby Isaac Vec mode[6]; 134026175e5SToby Isaac PetscSection section, globalSection; 1359d8fbdeaSMatthew G. Knepley PetscInt dim, dimEmbed, n, m, d, i, j; 136cb1e1211SMatthew G Knepley PetscErrorCode ierr; 137cb1e1211SMatthew G Knepley 138cb1e1211SMatthew G Knepley PetscFunctionBegin; 139cb1e1211SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 140c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1419d8fbdeaSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 142cb1e1211SMatthew G Knepley if (dim == 1) { 143cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr); 144cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 145cb1e1211SMatthew G Knepley } 146026175e5SToby Isaac ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 147026175e5SToby Isaac ierr = DMGetDefaultGlobalSection(dm, &globalSection);CHKERRQ(ierr); 148cb1e1211SMatthew G Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 149cb1e1211SMatthew G Knepley m = (dim*(dim+1))/2; 150cb1e1211SMatthew G Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 151cb1e1211SMatthew G Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 152cb1e1211SMatthew G Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 153cb1e1211SMatthew G Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 154026175e5SToby Isaac for (d = 0; d < m; d++) { 155330485fdSToby Isaac PetscInt ctx[2]; 156026175e5SToby Isaac void *voidctx = (void *) (&ctx[0]); 1570163fd50SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody; 158cb1e1211SMatthew G Knepley 1599d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 160330485fdSToby Isaac ctx[1] = d; 1610709b2feSToby Isaac ierr = DMProjectFunction(dm, 0.0, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 162cb1e1211SMatthew G Knepley } 163cb1e1211SMatthew G Knepley for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 164cb1e1211SMatthew G Knepley /* Orthonormalize system */ 165cb1e1211SMatthew G Knepley for (i = dim; i < m; ++i) { 166cb1e1211SMatthew G Knepley PetscScalar dots[6]; 167cb1e1211SMatthew G Knepley 168cb1e1211SMatthew G Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 169cb1e1211SMatthew G Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 170cb1e1211SMatthew G Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 171cb1e1211SMatthew G Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 172cb1e1211SMatthew G Knepley } 173cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr); 174cb1e1211SMatthew G Knepley for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 175cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 176cb1e1211SMatthew G Knepley } 177cb1e1211SMatthew G Knepley 178cb1e1211SMatthew G Knepley #undef __FUNCT__ 179b29cfa1cSToby Isaac #define __FUNCT__ "DMPlexSetMaxProjectionHeight" 180b29cfa1cSToby Isaac /*@ 181b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 182b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 183b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 184b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 185b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 186b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 187b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 188b29cfa1cSToby Isaac 189b29cfa1cSToby Isaac Input Parameters: 190b29cfa1cSToby Isaac + dm - the DMPlex object 191b29cfa1cSToby Isaac - height - the maximum projection height >= 0 192b29cfa1cSToby Isaac 193b29cfa1cSToby Isaac Level: advanced 194b29cfa1cSToby Isaac 1954d6f44ffSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 196b29cfa1cSToby Isaac @*/ 197b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 198b29cfa1cSToby Isaac { 199b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 200b29cfa1cSToby Isaac 201b29cfa1cSToby Isaac PetscFunctionBegin; 202b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 203b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 204b29cfa1cSToby Isaac PetscFunctionReturn(0); 205b29cfa1cSToby Isaac } 206b29cfa1cSToby Isaac 207b29cfa1cSToby Isaac #undef __FUNCT__ 208b29cfa1cSToby Isaac #define __FUNCT__ "DMPlexGetMaxProjectionHeight" 209b29cfa1cSToby Isaac /*@ 210b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 211b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 212b29cfa1cSToby Isaac 213b29cfa1cSToby Isaac Input Parameters: 214b29cfa1cSToby Isaac . dm - the DMPlex object 215b29cfa1cSToby Isaac 216b29cfa1cSToby Isaac Output Parameters: 217b29cfa1cSToby Isaac . height - the maximum projection height 218b29cfa1cSToby Isaac 219b29cfa1cSToby Isaac Level: intermediate 220b29cfa1cSToby Isaac 2214d6f44ffSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 222b29cfa1cSToby Isaac @*/ 223b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 224b29cfa1cSToby Isaac { 225b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 226b29cfa1cSToby Isaac 227b29cfa1cSToby Isaac PetscFunctionBegin; 228b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 229b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 230b29cfa1cSToby Isaac PetscFunctionReturn(0); 231b29cfa1cSToby Isaac } 232b29cfa1cSToby Isaac 233b29cfa1cSToby Isaac #undef __FUNCT__ 2340709b2feSToby Isaac #define __FUNCT__ "DMProjectFunctionLabelLocal_Plex" 2350709b2feSToby Isaac PetscErrorCode DMProjectFunctionLabelLocal_Plex(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 236a18a7fb9SMatthew G. Knepley { 2377d1dd11eSToby Isaac PetscDualSpace *sp, *cellsp; 238dda36da7SMatthew G. Knepley PetscInt *numComp; 239a18a7fb9SMatthew G. Knepley PetscSection section; 240a18a7fb9SMatthew G. Knepley PetscScalar *values; 241ad96f515SMatthew G. Knepley PetscBool *fieldActive; 242dda36da7SMatthew G. Knepley PetscInt numFields, dim, dimEmbed, spDim, totDim = 0, numValues, pStart, pEnd, cStart, cEnd, cEndInterior, f, d, v, i, comp, maxHeight, h; 243a18a7fb9SMatthew G. Knepley PetscErrorCode ierr; 244a18a7fb9SMatthew G. Knepley 245a18a7fb9SMatthew G. Knepley PetscFunctionBegin; 2469ac3fadcSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 2479ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 2489ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 2499ac3fadcSMatthew G. Knepley if (cEnd <= cStart) PetscFunctionReturn(0); 250c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2517a1a1bd4SToby Isaac ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 252a18a7fb9SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 253a18a7fb9SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 254dda36da7SMatthew G. Knepley ierr = PetscMalloc2(numFields,&sp,numFields,&numComp);CHKERRQ(ierr); 2557d1dd11eSToby Isaac ierr = DMPlexGetMaxProjectionHeight(dm,&maxHeight);CHKERRQ(ierr); 2567d1dd11eSToby Isaac if (maxHeight < 0 || maxHeight > dim) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"maximum projection height %d not in [0, %d)\n", maxHeight,dim);} 2579ac3fadcSMatthew G. Knepley if (maxHeight > 0) {ierr = PetscMalloc1(numFields,&cellsp);CHKERRQ(ierr);} 2589ac3fadcSMatthew G. Knepley else {cellsp = sp;} 2597d1dd11eSToby Isaac for (h = 0; h <= maxHeight; h++) { 2607d1dd11eSToby Isaac ierr = DMPlexGetHeightStratum(dm, h, &pStart, &pEnd);CHKERRQ(ierr); 261fa5a0009SMatthew G. Knepley if (!h) {pStart = cStart; pEnd = cEnd;} 2627d1dd11eSToby Isaac if (pEnd <= pStart) continue; 2637d1dd11eSToby Isaac totDim = 0; 264a18a7fb9SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 2659ac3fadcSMatthew G. Knepley PetscObject obj; 2669ac3fadcSMatthew G. Knepley PetscClassId id; 2679ac3fadcSMatthew G. Knepley 2689ac3fadcSMatthew G. Knepley ierr = DMGetField(dm, f, &obj);CHKERRQ(ierr); 2699ac3fadcSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 2709ac3fadcSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2719ac3fadcSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 2729ac3fadcSMatthew G. Knepley 273dda36da7SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &numComp[f]);CHKERRQ(ierr); 2747d1dd11eSToby Isaac if (!h) { 275ee2838f6SToby Isaac ierr = PetscFEGetDualSpace(fe, &cellsp[f]);CHKERRQ(ierr); 2767d1dd11eSToby Isaac sp[f] = cellsp[f]; 2779ac3fadcSMatthew G. Knepley } else { 2787d1dd11eSToby Isaac ierr = PetscDualSpaceGetHeightSubspace(cellsp[f], h, &sp[f]);CHKERRQ(ierr); 2797d1dd11eSToby Isaac if (!sp[f]) continue; 2807d1dd11eSToby Isaac } 2819ac3fadcSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 2829ac3fadcSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 2839ac3fadcSMatthew G. Knepley 284dda36da7SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &numComp[f]);CHKERRQ(ierr); 285*5ad2b8a8SToby Isaac ierr = PetscFVGetDualSpace(fv, &cellsp[f]);CHKERRQ(ierr); 286*5ad2b8a8SToby Isaac sp[f] = cellsp[f]; 2879ac3fadcSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 288a18a7fb9SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 289dda36da7SMatthew G. Knepley totDim += spDim*numComp[f]; 290a18a7fb9SMatthew G. Knepley } 2917d1dd11eSToby Isaac ierr = DMPlexVecGetClosure(dm, section, localX, pStart, &numValues, NULL);CHKERRQ(ierr); 2927d1dd11eSToby Isaac if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section point closure size %d != dual space dimension %d", numValues, totDim); 293d374af2bSToby Isaac if (!totDim) continue; 294a18a7fb9SMatthew G. Knepley ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 295ad96f515SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFields, PETSC_BOOL, &fieldActive);CHKERRQ(ierr); 296ee2838f6SToby Isaac for (f = 0; f < numFields; ++f) fieldActive[f] = (funcs[f] && sp[f]) ? PETSC_TRUE : PETSC_FALSE; 297a18a7fb9SMatthew G. Knepley for (i = 0; i < numIds; ++i) { 298a18a7fb9SMatthew G. Knepley IS pointIS; 299a18a7fb9SMatthew G. Knepley const PetscInt *points; 300a18a7fb9SMatthew G. Knepley PetscInt n, p; 301a18a7fb9SMatthew G. Knepley 302a18a7fb9SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &pointIS);CHKERRQ(ierr); 30322734eb1Ssarens if (!pointIS) continue; /* No points with that id on this process */ 304a18a7fb9SMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &n);CHKERRQ(ierr); 305a18a7fb9SMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 306a18a7fb9SMatthew G. Knepley for (p = 0; p < n; ++p) { 307a18a7fb9SMatthew G. Knepley const PetscInt point = points[p]; 308e1d0b1adSMatthew G. Knepley PetscFECellGeom geom; 309a18a7fb9SMatthew G. Knepley 3107d1dd11eSToby Isaac if ((point < pStart) || (point >= pEnd)) continue; 311e1d0b1adSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, point, NULL, geom.v0, geom.J, NULL, &geom.detJ);CHKERRQ(ierr); 312ee2838f6SToby Isaac geom.dim = dim - h; 3137a1a1bd4SToby Isaac geom.dimEmbed = dimEmbed; 314a18a7fb9SMatthew G. Knepley for (f = 0, v = 0; f < numFields; ++f) { 315a18a7fb9SMatthew G. Knepley void * const ctx = ctxs ? ctxs[f] : NULL; 316bf3434eeSMatthew G. Knepley 3177d1dd11eSToby Isaac if (!sp[f]) continue; 318a18a7fb9SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 319a18a7fb9SMatthew G. Knepley for (d = 0; d < spDim; ++d) { 320a18a7fb9SMatthew G. Knepley if (funcs[f]) { 321e735a8a9SMatthew G. Knepley ierr = PetscDualSpaceApply(sp[f], d, time, &geom, numComp[f], funcs[f], ctx, &values[v]); 322e735a8a9SMatthew G. Knepley if (ierr) { 323e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 324e735a8a9SMatthew G. Knepley ierr2 = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr2); 325e735a8a9SMatthew G. Knepley ierr2 = DMRestoreWorkArray(dm, numFields, PETSC_BOOL, &fieldActive);CHKERRQ(ierr2); 326e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 327e735a8a9SMatthew G. Knepley } 328a18a7fb9SMatthew G. Knepley } else { 329dda36da7SMatthew G. Knepley for (comp = 0; comp < numComp[f]; ++comp) values[v+comp] = 0.0; 330a18a7fb9SMatthew G. Knepley } 331dda36da7SMatthew G. Knepley v += numComp[f]; 332a18a7fb9SMatthew G. Knepley } 333a18a7fb9SMatthew G. Knepley } 334ad96f515SMatthew G. Knepley ierr = DMPlexVecSetFieldClosure_Internal(dm, section, localX, fieldActive, point, values, mode);CHKERRQ(ierr); 335a18a7fb9SMatthew G. Knepley } 336a18a7fb9SMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 337a18a7fb9SMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 338a18a7fb9SMatthew G. Knepley } 339a18a7fb9SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 340ad96f515SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numFields, PETSC_BOOL, &fieldActive);CHKERRQ(ierr); 341a8543ddbSMatthew G. Knepley } 342dda36da7SMatthew G. Knepley ierr = PetscFree2(sp, numComp);CHKERRQ(ierr); 3437d1dd11eSToby Isaac if (maxHeight > 0) { 3447d1dd11eSToby Isaac ierr = PetscFree(cellsp);CHKERRQ(ierr); 3457d1dd11eSToby Isaac } 346a18a7fb9SMatthew G. Knepley PetscFunctionReturn(0); 347a18a7fb9SMatthew G. Knepley } 348a18a7fb9SMatthew G. Knepley 349a18a7fb9SMatthew G. Knepley #undef __FUNCT__ 3500709b2feSToby Isaac #define __FUNCT__ "DMProjectFunctionLocal_Plex" 3510709b2feSToby Isaac PetscErrorCode DMProjectFunctionLocal_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 352cb1e1211SMatthew G Knepley { 3537d1dd11eSToby Isaac PetscDualSpace *sp, *cellsp; 35415496722SMatthew G. Knepley PetscInt *numComp; 35572f94c41SMatthew G. Knepley PetscSection section; 35672f94c41SMatthew G. Knepley PetscScalar *values; 357b793a5ffSMatthew G. Knepley PetscInt Nf, dim, dimEmbed, spDim, totDim = 0, numValues, pStart, pEnd, p, cStart, cEnd, cEndInterior, f, d, v, comp, h, maxHeight; 358d0ed5973SMatthew G. Knepley PetscBool *isFE, hasFE = PETSC_FALSE, hasFV = PETSC_FALSE; 359cb1e1211SMatthew G Knepley PetscErrorCode ierr; 360cb1e1211SMatthew G Knepley 361cb1e1211SMatthew G Knepley PetscFunctionBegin; 3629ac3fadcSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 3639ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 3649ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 365cb1e1211SMatthew G Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 366b793a5ffSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 367d0ed5973SMatthew G. Knepley ierr = PetscMalloc3(Nf, &isFE, Nf, &sp, Nf, &numComp);CHKERRQ(ierr); 3687d1dd11eSToby Isaac ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 369ee2838f6SToby Isaac ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 3707d1dd11eSToby Isaac ierr = DMPlexGetMaxProjectionHeight(dm,&maxHeight);CHKERRQ(ierr); 3717d1dd11eSToby Isaac if (maxHeight < 0 || maxHeight > dim) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"maximum projection height %d not in [0, %d)\n", maxHeight,dim);} 3727d1dd11eSToby Isaac if (maxHeight > 0) { 373b793a5ffSMatthew G. Knepley ierr = PetscMalloc1(Nf,&cellsp);CHKERRQ(ierr); 3747d1dd11eSToby Isaac } 375048b7b1eSToby Isaac else { 376048b7b1eSToby Isaac cellsp = sp; 377048b7b1eSToby Isaac } 378b793a5ffSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 37915496722SMatthew G. Knepley PetscObject obj; 38015496722SMatthew G. Knepley PetscClassId id; 3810f2d7e86SMatthew G. Knepley 38215496722SMatthew G. Knepley ierr = DMGetField(dm, f, &obj);CHKERRQ(ierr); 38315496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 38415496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 38515496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 38615496722SMatthew G. Knepley 387d0ed5973SMatthew G. Knepley hasFE = PETSC_TRUE; 388d0ed5973SMatthew G. Knepley isFE[f] = PETSC_TRUE; 38915496722SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &numComp[f]);CHKERRQ(ierr); 3907d1dd11eSToby Isaac ierr = PetscFEGetDualSpace(fe, &cellsp[f]);CHKERRQ(ierr); 39115496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 39215496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 39315496722SMatthew G. Knepley 394d0ed5973SMatthew G. Knepley hasFV = PETSC_TRUE; 395d0ed5973SMatthew G. Knepley isFE[f] = PETSC_FALSE; 396976fa17dSToby Isaac ierr = PetscFVGetNumComponents(fv, &numComp[f]);CHKERRQ(ierr); 397976fa17dSToby Isaac ierr = PetscFVGetDualSpace(fv, &cellsp[f]);CHKERRQ(ierr); 39815496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 399db4c39b1SToby Isaac } 400db4c39b1SToby Isaac for (h = 0; h <= maxHeight; h++) { 401db4c39b1SToby Isaac ierr = DMPlexGetHeightStratum(dm, h, &pStart, &pEnd);CHKERRQ(ierr); 402db4c39b1SToby Isaac if (!h) {pStart = cStart; pEnd = cEnd;} 403db4c39b1SToby Isaac if (pEnd <= pStart) continue; 404db4c39b1SToby Isaac totDim = 0; 405db4c39b1SToby Isaac for (f = 0; f < Nf; ++f) { 406db4c39b1SToby Isaac if (!h) { 407cb1e1211SMatthew G Knepley sp[f] = cellsp[f]; 408cb1e1211SMatthew G Knepley } 409cb1e1211SMatthew G Knepley else { 410cb1e1211SMatthew G Knepley ierr = PetscDualSpaceGetHeightSubspace(cellsp[f], h, &sp[f]);CHKERRQ(ierr); 411cb1e1211SMatthew G Knepley if (!sp[f]) { 412cb1e1211SMatthew G Knepley continue; 413cb1e1211SMatthew G Knepley } 414cb1e1211SMatthew G Knepley } 41572f94c41SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 41615496722SMatthew G. Knepley totDim += spDim*numComp[f]; 417cb1e1211SMatthew G Knepley } 4187d1dd11eSToby Isaac ierr = DMPlexVecGetClosure(dm, section, localX, pStart, &numValues, NULL);CHKERRQ(ierr); 4197d1dd11eSToby Isaac if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section point closure size %d != dual space dimension %d", numValues, totDim); 420d374af2bSToby Isaac if (!totDim) continue; 42172f94c41SMatthew G. Knepley ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 4227d1dd11eSToby Isaac for (p = pStart; p < pEnd; ++p) { 423d0ed5973SMatthew G. Knepley PetscFECellGeom fegeom; 424d0ed5973SMatthew G. Knepley PetscFVCellGeom fvgeom; 425cb1e1211SMatthew G Knepley 426d0ed5973SMatthew G. Knepley if (hasFE) { 427d0ed5973SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, p, NULL, fegeom.v0, fegeom.J, NULL, &fegeom.detJ);CHKERRQ(ierr); 428d0ed5973SMatthew G. Knepley fegeom.dim = dim - h; 429d0ed5973SMatthew G. Knepley fegeom.dimEmbed = dimEmbed; 430d0ed5973SMatthew G. Knepley } 431d0ed5973SMatthew G. Knepley if (hasFV) {ierr = DMPlexComputeCellGeometryFVM(dm, p, &fvgeom.volume, fvgeom.centroid, NULL);CHKERRQ(ierr);} 432b793a5ffSMatthew G. Knepley for (f = 0, v = 0; f < Nf; ++f) { 433c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[f] : NULL; 4340f2d7e86SMatthew G. Knepley 4357d1dd11eSToby Isaac if (!sp[f]) continue; 43672f94c41SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 43772f94c41SMatthew G. Knepley for (d = 0; d < spDim; ++d) { 438120386c5SMatthew G. Knepley if (funcs[f]) { 439992dc9beSMatthew G. Knepley if (isFE[f]) {ierr = PetscDualSpaceApply(sp[f], d, time, &fegeom, numComp[f], funcs[f], ctx, &values[v]);} 440992dc9beSMatthew G. Knepley else {ierr = PetscDualSpaceApplyFVM(sp[f], d, time, &fvgeom, numComp[f], funcs[f], ctx, &values[v]);} 4415d960a70SMatthew G. Knepley if (ierr) { 442e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 443e735a8a9SMatthew G. Knepley ierr2 = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr2); 4445d960a70SMatthew G. Knepley CHKERRQ(ierr); 4455d960a70SMatthew G. Knepley } 446120386c5SMatthew G. Knepley } else { 44715496722SMatthew G. Knepley for (comp = 0; comp < numComp[f]; ++comp) values[v+comp] = 0.0; 448120386c5SMatthew G. Knepley } 44915496722SMatthew G. Knepley v += numComp[f]; 450cb1e1211SMatthew G Knepley } 451cb1e1211SMatthew G Knepley } 4527d1dd11eSToby Isaac ierr = DMPlexVecSetClosure(dm, section, localX, p, values, mode);CHKERRQ(ierr); 453cb1e1211SMatthew G Knepley } 45472f94c41SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 4557d1dd11eSToby Isaac } 456d0ed5973SMatthew G. Knepley ierr = PetscFree3(isFE, sp, numComp);CHKERRQ(ierr); 4577d1dd11eSToby Isaac if (maxHeight > 0) { 4587d1dd11eSToby Isaac ierr = PetscFree(cellsp);CHKERRQ(ierr); 4597d1dd11eSToby Isaac } 460cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 461cb1e1211SMatthew G Knepley } 462cb1e1211SMatthew G Knepley 463cb1e1211SMatthew G Knepley #undef __FUNCT__ 464bdd6f66aSToby Isaac #define __FUNCT__ "DMProjectFieldLocal_Plex" 465bfc4295aSToby Isaac PetscErrorCode DMProjectFieldLocal_Plex(DM dm, Vec localU, 466e29c0834SMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 467e29c0834SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 468e29c0834SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 469e29c0834SMatthew G. Knepley PetscReal, const PetscReal[], PetscScalar[]), 470e29c0834SMatthew G. Knepley InsertMode mode, Vec localX) 4710f2d7e86SMatthew G. Knepley { 4720f2d7e86SMatthew G. Knepley DM dmAux; 473d5396abcSMatthew G. Knepley PetscDS prob, probAux = NULL; 4740f2d7e86SMatthew G. Knepley Vec A; 475d5396abcSMatthew G. Knepley PetscSection section, sectionAux = NULL; 476b793a5ffSMatthew G. Knepley PetscDualSpace *sp; 477b793a5ffSMatthew G. Knepley PetscInt *Ncf; 478326413afSMatthew G. Knepley PetscScalar *values, *u, *u_x, *a, *a_x; 479d5396abcSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 480e29c0834SMatthew G. Knepley PetscInt *uOff, *uOff_x, *aOff = NULL, *aOff_x = NULL; 481e29c0834SMatthew G. Knepley PetscInt Nf, NfAux = 0, dim, spDim, totDim, numValues, cStart, cEnd, cEndInterior, c, f, d, v, comp, maxHeight; 4820f2d7e86SMatthew G. Knepley PetscErrorCode ierr; 4830f2d7e86SMatthew G. Knepley 4840f2d7e86SMatthew G. Knepley PetscFunctionBegin; 485048b7b1eSToby Isaac ierr = DMPlexGetMaxProjectionHeight(dm,&maxHeight);CHKERRQ(ierr); 486048b7b1eSToby Isaac if (maxHeight > 0) {SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Field projection for height > 0 not supported yet");} 4872764a2aaSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 488c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 4890f2d7e86SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 4900f2d7e86SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 491b793a5ffSMatthew G. Knepley ierr = PetscMalloc2(Nf, &sp, Nf, &Ncf);CHKERRQ(ierr); 4920f2d7e86SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 4932764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 494e29c0834SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 495e29c0834SMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 4962764a2aaSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(prob, &u, NULL, &u_x);CHKERRQ(ierr); 4972764a2aaSMatthew G. Knepley ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr); 4980f2d7e86SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 4990f2d7e86SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 5000f2d7e86SMatthew G. Knepley if (dmAux) { 5012764a2aaSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 502e29c0834SMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 503326413afSMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 504e29c0834SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 505e29c0834SMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(probAux, &aOff_x);CHKERRQ(ierr); 5062764a2aaSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(probAux, &a, NULL, &a_x);CHKERRQ(ierr); 5070f2d7e86SMatthew G. Knepley } 508bdd6f66aSToby Isaac ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localU, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 5090f2d7e86SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, cStart, &numValues, NULL);CHKERRQ(ierr); 5100f2d7e86SMatthew G. Knepley if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section cell closure size %d != dual space dimension %d", numValues, totDim); 5110f2d7e86SMatthew G. Knepley ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 5120f2d7e86SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 5139ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 5149ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 5150f2d7e86SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 516326413afSMatthew G. Knepley PetscScalar *coefficients = NULL, *coefficientsAux = NULL; 517326413afSMatthew G. Knepley 5188e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 519326413afSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localU, c, NULL, &coefficients);CHKERRQ(ierr); 520326413afSMatthew G. Knepley if (dmAux) {ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &coefficientsAux);CHKERRQ(ierr);} 5210f2d7e86SMatthew G. Knepley for (f = 0, v = 0; f < Nf; ++f) { 522d5396abcSMatthew G. Knepley PetscObject obj; 523d5396abcSMatthew G. Knepley PetscClassId id; 5243113607cSMatthew G. Knepley 525d5396abcSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 526d5396abcSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 527d5396abcSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 528d5396abcSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 529d5396abcSMatthew G. Knepley 530b793a5ffSMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &sp[f]);CHKERRQ(ierr); 531b793a5ffSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Ncf[f]);CHKERRQ(ierr); 532d5396abcSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 533d5396abcSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 534d5396abcSMatthew G. Knepley 535b793a5ffSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Ncf[f]);CHKERRQ(ierr); 5366e2a8d74SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &sp[f]);CHKERRQ(ierr); 537d5396abcSMatthew G. Knepley } 538b793a5ffSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 5390f2d7e86SMatthew G. Knepley for (d = 0; d < spDim; ++d) { 5400f2d7e86SMatthew G. Knepley PetscQuadrature quad; 5410f2d7e86SMatthew G. Knepley const PetscReal *points, *weights; 5420f2d7e86SMatthew G. Knepley PetscInt numPoints, q; 5430f2d7e86SMatthew G. Knepley 5440f2d7e86SMatthew G. Knepley if (funcs[f]) { 545b793a5ffSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(sp[f], d, &quad);CHKERRQ(ierr); 5460f2d7e86SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numPoints, &points, &weights);CHKERRQ(ierr); 5470f2d7e86SMatthew G. Knepley for (q = 0; q < numPoints; ++q) { 5480f2d7e86SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &points[q*dim], x); 549326413afSMatthew G. Knepley ierr = EvaluateFieldJets(prob, PETSC_FALSE, q, invJ, coefficients, NULL, u, u_x, NULL);CHKERRQ(ierr); 550326413afSMatthew G. Knepley ierr = EvaluateFieldJets(probAux, PETSC_FALSE, q, invJ, coefficientsAux, NULL, a, a_x, NULL);CHKERRQ(ierr); 551e29c0834SMatthew G. Knepley (*funcs[f])(dim, Nf, NfAux, uOff, uOff_x, u, NULL, u_x, aOff, aOff_x, a, NULL, a_x, 0.0, x, &values[v]); 5520f2d7e86SMatthew G. Knepley } 5530f2d7e86SMatthew G. Knepley } else { 554b793a5ffSMatthew G. Knepley for (comp = 0; comp < Ncf[f]; ++comp) values[v+comp] = 0.0; 5550f2d7e86SMatthew G. Knepley } 556b793a5ffSMatthew G. Knepley v += Ncf[f]; 5570f2d7e86SMatthew G. Knepley } 5580f2d7e86SMatthew G. Knepley } 559326413afSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, localU, c, NULL, &coefficients);CHKERRQ(ierr); 560326413afSMatthew G. Knepley if (dmAux) {ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &coefficientsAux);CHKERRQ(ierr);} 5610f2d7e86SMatthew G. Knepley ierr = DMPlexVecSetClosure(dm, section, localX, c, values, mode);CHKERRQ(ierr); 5620f2d7e86SMatthew G. Knepley } 5630f2d7e86SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 564ca3eba1bSToby Isaac ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 565b793a5ffSMatthew G. Knepley ierr = PetscFree2(sp, Ncf);CHKERRQ(ierr); 5660f2d7e86SMatthew G. Knepley PetscFunctionReturn(0); 5670f2d7e86SMatthew G. Knepley } 5680f2d7e86SMatthew G. Knepley 5690f2d7e86SMatthew G. Knepley #undef __FUNCT__ 570d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FEM_Internal" 5710163fd50SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FEM_Internal(DM dm, PetscReal time, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 57255f2e967SMatthew G. Knepley { 5730163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 57455f2e967SMatthew G. Knepley void **ctxs; 575d7ddef95SMatthew G. Knepley PetscInt numFields; 576d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 577d7ddef95SMatthew G. Knepley 578d7ddef95SMatthew G. Knepley PetscFunctionBegin; 579d7ddef95SMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 580d7ddef95SMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 581d7ddef95SMatthew G. Knepley funcs[field] = func; 582d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 5830709b2feSToby Isaac ierr = DMProjectFunctionLabelLocal(dm, time, label, numids, ids, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 584d7ddef95SMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 585d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 586d7ddef95SMatthew G. Knepley } 587d7ddef95SMatthew G. Knepley 588d7ddef95SMatthew G. Knepley #undef __FUNCT__ 589d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FVM_Internal" 5900e0f25f2SMatthew G. Knepley /* This ignores numcomps/comps */ 591d7ddef95SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FVM_Internal(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, 592d7ddef95SMatthew G. Knepley PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 593d7ddef95SMatthew G. Knepley { 59461f58d28SMatthew G. Knepley PetscDS prob; 595da97024aSMatthew G. Knepley PetscSF sf; 596d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 59720369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 598da97024aSMatthew G. Knepley const PetscInt *leaves; 599d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 600520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 601e735a8a9SMatthew G. Knepley PetscErrorCode ierr, ierru = 0; 602d7ddef95SMatthew G. Knepley 603d7ddef95SMatthew G. Knepley PetscFunctionBegin; 604da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 605da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 606da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 607d7ddef95SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 608d7ddef95SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 60961f58d28SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 610d7ddef95SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 611d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 61220369375SToby Isaac if (cellGeometry) { 613d7ddef95SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 614d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 61520369375SToby Isaac } 616d7ddef95SMatthew G. Knepley if (Grad) { 617c0a6632aSMatthew G. Knepley PetscFV fv; 618c0a6632aSMatthew G. Knepley 619c0a6632aSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fv);CHKERRQ(ierr); 620d7ddef95SMatthew G. Knepley ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr); 621d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr); 622d7ddef95SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 623d7ddef95SMatthew G. Knepley ierr = DMGetWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 624d7ddef95SMatthew G. Knepley } 625d7ddef95SMatthew G. Knepley ierr = VecGetArray(locX, &x);CHKERRQ(ierr); 626d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 627d7ddef95SMatthew G. Knepley IS faceIS; 628d7ddef95SMatthew G. Knepley const PetscInt *faces; 629d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 630d7ddef95SMatthew G. Knepley 631d7ddef95SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr); 632d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 633d7ddef95SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 634d7ddef95SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 635d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 636d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 637640bce14SSatish Balay PetscFVFaceGeom *fg; 638d7ddef95SMatthew G. Knepley 639d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 640da97024aSMatthew G. Knepley ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr); 641da97024aSMatthew G. Knepley if (loc >= 0) continue; 642d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 643d7ddef95SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 644d7ddef95SMatthew G. Knepley if (Grad) { 645640bce14SSatish Balay PetscFVCellGeom *cg; 646640bce14SSatish Balay PetscScalar *cx, *cgrad; 647d7ddef95SMatthew G. Knepley PetscScalar *xG; 648d7ddef95SMatthew G. Knepley PetscReal dx[3]; 649d7ddef95SMatthew G. Knepley PetscInt d; 650d7ddef95SMatthew G. Knepley 651d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr); 652d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr); 653d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr); 654520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 655d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 656d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 657e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx); 658e735a8a9SMatthew G. Knepley if (ierru) { 659e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 660e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 661e735a8a9SMatthew G. Knepley goto cleanup; 662e735a8a9SMatthew G. Knepley } 663d7ddef95SMatthew G. Knepley } else { 664640bce14SSatish Balay PetscScalar *xI; 665d7ddef95SMatthew G. Knepley PetscScalar *xG; 666d7ddef95SMatthew G. Knepley 667d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr); 668520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 669e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 670e735a8a9SMatthew G. Knepley if (ierru) { 671e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 672e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 673e735a8a9SMatthew G. Knepley goto cleanup; 674e735a8a9SMatthew G. Knepley } 675d7ddef95SMatthew G. Knepley } 676d7ddef95SMatthew G. Knepley } 677d7ddef95SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 678d7ddef95SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 679d7ddef95SMatthew G. Knepley } 680e735a8a9SMatthew G. Knepley cleanup: 681d7ddef95SMatthew G. Knepley ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr); 682d7ddef95SMatthew G. Knepley if (Grad) { 683d7ddef95SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 684d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr); 685d7ddef95SMatthew G. Knepley } 686e735a8a9SMatthew G. Knepley if (cellGeometry) {ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);} 687d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 688e735a8a9SMatthew G. Knepley CHKERRQ(ierru); 689d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 690d7ddef95SMatthew G. Knepley } 691d7ddef95SMatthew G. Knepley 692d7ddef95SMatthew G. Knepley #undef __FUNCT__ 693d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues" 694bdd6f66aSToby Isaac PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 695d7ddef95SMatthew G. Knepley { 696d7ddef95SMatthew G. Knepley PetscInt numBd, b; 69755f2e967SMatthew G. Knepley PetscErrorCode ierr; 69855f2e967SMatthew G. Knepley 69955f2e967SMatthew G. Knepley PetscFunctionBegin; 70055f2e967SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 701d7ddef95SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 2); 702d7ddef95SMatthew G. Knepley if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);} 703d7ddef95SMatthew G. Knepley if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);} 704d7ddef95SMatthew G. Knepley if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);} 705a6ba4734SToby Isaac ierr = DMGetNumBoundary(dm, &numBd);CHKERRQ(ierr); 70655f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 70755f2e967SMatthew G. Knepley PetscBool isEssential; 708d7ddef95SMatthew G. Knepley const char *labelname; 709d7ddef95SMatthew G. Knepley DMLabel label; 710d7ddef95SMatthew G. Knepley PetscInt field; 711d7ddef95SMatthew G. Knepley PetscObject obj; 712d7ddef95SMatthew G. Knepley PetscClassId id; 71355f2e967SMatthew G. Knepley void (*func)(); 714d7ddef95SMatthew G. Knepley PetscInt numids; 715d7ddef95SMatthew G. Knepley const PetscInt *ids; 71655f2e967SMatthew G. Knepley void *ctx; 71755f2e967SMatthew G. Knepley 718a6ba4734SToby Isaac ierr = DMGetBoundary(dm, b, &isEssential, NULL, &labelname, &field, NULL, NULL, &func, &numids, &ids, &ctx);CHKERRQ(ierr); 719bdd6f66aSToby Isaac if (insertEssential != isEssential) continue; 720c58f1c22SToby Isaac ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr); 721d7ddef95SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 722d7ddef95SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 723d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 724bdd6f66aSToby Isaac if (!isEssential) continue; /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 725092e5057SToby Isaac ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 7260163fd50SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FEM_Internal(dm, time, field, label, numids, ids, (PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr); 727092e5057SToby Isaac ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 728d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 72943ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 730d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FVM_Internal(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, 731d7ddef95SMatthew G. Knepley field, label, numids, ids, (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr); 732d7ddef95SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 73355f2e967SMatthew G. Knepley } 73455f2e967SMatthew G. Knepley PetscFunctionReturn(0); 73555f2e967SMatthew G. Knepley } 73655f2e967SMatthew G. Knepley 737cb1e1211SMatthew G Knepley #undef __FUNCT__ 7380709b2feSToby Isaac #define __FUNCT__ "DMComputeL2Diff_Plex" 7390709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 740cb1e1211SMatthew G Knepley { 741cb1e1211SMatthew G Knepley const PetscInt debug = 0; 742cb1e1211SMatthew G Knepley PetscSection section; 743c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 744cb1e1211SMatthew G Knepley Vec localX; 74515496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 746cb1e1211SMatthew G Knepley PetscReal *coords, *v0, *J, *invJ, detJ; 747cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 74815496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 7499ac3fadcSMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, numQuadPoints, cStart, cEnd, cEndInterior, c, field, fieldOffset; 750cb1e1211SMatthew G Knepley PetscErrorCode ierr; 751cb1e1211SMatthew G Knepley 752cb1e1211SMatthew G Knepley PetscFunctionBegin; 753c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 754cb1e1211SMatthew G Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 755cb1e1211SMatthew G Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 756cb1e1211SMatthew G Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 757bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 758cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 759cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 760cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 76115496722SMatthew G. Knepley PetscObject obj; 76215496722SMatthew G. Knepley PetscClassId id; 763c5bbbd5bSMatthew G. Knepley PetscInt Nc; 764c5bbbd5bSMatthew G. Knepley 76515496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 76615496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 76715496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 76815496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 76915496722SMatthew G. Knepley 7700f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 7710f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 77215496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 77315496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 77415496722SMatthew G. Knepley 77515496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 77615496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 77715496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 778c5bbbd5bSMatthew G. Knepley numComponents += Nc; 779cb1e1211SMatthew G Knepley } 78015496722SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 78115496722SMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,dim,&coords,dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 782cb1e1211SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 7839ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 7849ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 785cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 786a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 787cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 788cb1e1211SMatthew G Knepley 7898e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 790cb1e1211SMatthew G Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 791cb1e1211SMatthew G Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 792cb1e1211SMatthew G Knepley 79315496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 79415496722SMatthew G. Knepley PetscObject obj; 79515496722SMatthew G. Knepley PetscClassId id; 796c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 79715496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 798cb1e1211SMatthew G Knepley 79915496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 80015496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 80115496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 80215496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 80315496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 804cb1e1211SMatthew G Knepley if (debug) { 805cb1e1211SMatthew G Knepley char title[1024]; 806cb1e1211SMatthew G Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 80715496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 808cb1e1211SMatthew G Knepley } 809cb1e1211SMatthew G Knepley for (q = 0; q < numQuadPoints; ++q) { 81015496722SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &quadPoints[q*dim], coords); 811e735a8a9SMatthew G. Knepley ierr = (*funcs[field])(dim, time, coords, Nc, funcVal, ctx); 812e735a8a9SMatthew G. Knepley if (ierr) { 813e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 814e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 815e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 816e735a8a9SMatthew G. Knepley ierr2 = PetscFree6(funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr2); 817e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 818e735a8a9SMatthew G. Knepley } 81915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 82015496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 82115496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 82215496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 82315496722SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);} 82415496722SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ; 825cb1e1211SMatthew G Knepley } 826cb1e1211SMatthew G Knepley } 82715496722SMatthew G. Knepley fieldOffset += Nb*Nc; 828cb1e1211SMatthew G Knepley } 829cb1e1211SMatthew G Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 830cb1e1211SMatthew G Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 831cb1e1211SMatthew G Knepley localDiff += elemDiff; 832cb1e1211SMatthew G Knepley } 83315496722SMatthew G. Knepley ierr = PetscFree6(funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr); 834cb1e1211SMatthew G Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 835b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 836cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 837cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 838cb1e1211SMatthew G Knepley } 839cb1e1211SMatthew G Knepley 840cb1e1211SMatthew G Knepley #undef __FUNCT__ 841b698f381SToby Isaac #define __FUNCT__ "DMComputeL2GradientDiff_Plex" 842b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 843cb1e1211SMatthew G Knepley { 84440e14135SMatthew G. Knepley const PetscInt debug = 0; 845cb1e1211SMatthew G Knepley PetscSection section; 84640e14135SMatthew G. Knepley PetscQuadrature quad; 84740e14135SMatthew G. Knepley Vec localX; 84840e14135SMatthew G. Knepley PetscScalar *funcVal, *interpolantVec; 84940e14135SMatthew G. Knepley PetscReal *coords, *realSpaceDer, *v0, *J, *invJ, detJ; 85040e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 8519ac3fadcSMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, cStart, cEnd, cEndInterior, c, field, fieldOffset, comp; 852cb1e1211SMatthew G Knepley PetscErrorCode ierr; 853cb1e1211SMatthew G Knepley 854cb1e1211SMatthew G Knepley PetscFunctionBegin; 855c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 85640e14135SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 85740e14135SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 85840e14135SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 85940e14135SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 86040e14135SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 861652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 8620f2d7e86SMatthew G. Knepley PetscFE fe; 86340e14135SMatthew G. Knepley PetscInt Nc; 864652b88e8SMatthew G. Knepley 8650f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 8660f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 8670f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 86840e14135SMatthew G. Knepley numComponents += Nc; 869652b88e8SMatthew G. Knepley } 8704d6f44ffSToby Isaac /* ierr = DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */ 87140e14135SMatthew G. Knepley ierr = PetscMalloc7(numComponents,&funcVal,dim,&coords,dim,&realSpaceDer,dim,&v0,dim*dim,&J,dim*dim,&invJ,dim,&interpolantVec);CHKERRQ(ierr); 87240e14135SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 8739ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 8749ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 87540e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 87640e14135SMatthew G. Knepley PetscScalar *x = NULL; 87740e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 878652b88e8SMatthew G. Knepley 8798e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 88040e14135SMatthew G. Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 88140e14135SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 88240e14135SMatthew G. Knepley 88340e14135SMatthew G. Knepley for (field = 0, comp = 0, fieldOffset = 0; field < numFields; ++field) { 8840f2d7e86SMatthew G. Knepley PetscFE fe; 88551259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 88621454ff5SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 88740e14135SMatthew G. Knepley PetscReal *basisDer; 88821454ff5SMatthew G. Knepley PetscInt numQuadPoints, Nb, Ncomp, q, d, e, fc, f, g; 88940e14135SMatthew G. Knepley 8900f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 89121454ff5SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 8920f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 8930f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Ncomp);CHKERRQ(ierr); 8940f2d7e86SMatthew G. Knepley ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr); 89540e14135SMatthew G. Knepley if (debug) { 89640e14135SMatthew G. Knepley char title[1024]; 89740e14135SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 89840e14135SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Ncomp, &x[fieldOffset]);CHKERRQ(ierr); 899652b88e8SMatthew G. Knepley } 90040e14135SMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 90140e14135SMatthew G. Knepley for (d = 0; d < dim; d++) { 90240e14135SMatthew G. Knepley coords[d] = v0[d]; 90340e14135SMatthew G. Knepley for (e = 0; e < dim; e++) { 90440e14135SMatthew G. Knepley coords[d] += J[d*dim+e]*(quadPoints[q*dim+e] + 1.0); 905652b88e8SMatthew G. Knepley } 90640e14135SMatthew G. Knepley } 907e735a8a9SMatthew G. Knepley ierr = (*funcs[field])(dim, time, coords, n, numFields, funcVal, ctx); 908e735a8a9SMatthew G. Knepley if (ierr) { 909e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 910e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 911e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 912e735a8a9SMatthew G. Knepley ierr2 = PetscFree7(funcVal,coords,realSpaceDer,v0,J,invJ,interpolantVec);CHKERRQ(ierr2); 913e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 914e735a8a9SMatthew G. Knepley } 91540e14135SMatthew G. Knepley for (fc = 0; fc < Ncomp; ++fc) { 91640e14135SMatthew G. Knepley PetscScalar interpolant = 0.0; 91740e14135SMatthew G. Knepley 91840e14135SMatthew G. Knepley for (d = 0; d < dim; ++d) interpolantVec[d] = 0.0; 91940e14135SMatthew G. Knepley for (f = 0; f < Nb; ++f) { 92040e14135SMatthew G. Knepley const PetscInt fidx = f*Ncomp+fc; 92140e14135SMatthew G. Knepley 92240e14135SMatthew G. Knepley for (d = 0; d < dim; ++d) { 92340e14135SMatthew G. Knepley realSpaceDer[d] = 0.0; 92440e14135SMatthew G. Knepley for (g = 0; g < dim; ++g) { 92540e14135SMatthew G. Knepley realSpaceDer[d] += invJ[g*dim+d]*basisDer[(q*Nb*Ncomp+fidx)*dim+g]; 92640e14135SMatthew G. Knepley } 92740e14135SMatthew G. Knepley interpolantVec[d] += x[fieldOffset+fidx]*realSpaceDer[d]; 92840e14135SMatthew G. Knepley } 92940e14135SMatthew G. Knepley } 93040e14135SMatthew G. Knepley for (d = 0; d < dim; ++d) interpolant += interpolantVec[d]*n[d]; 93140e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);} 93240e14135SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ; 93340e14135SMatthew G. Knepley } 93440e14135SMatthew G. Knepley } 93540e14135SMatthew G. Knepley comp += Ncomp; 93640e14135SMatthew G. Knepley fieldOffset += Nb*Ncomp; 93740e14135SMatthew G. Knepley } 93840e14135SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 93940e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 94040e14135SMatthew G. Knepley localDiff += elemDiff; 94140e14135SMatthew G. Knepley } 94240e14135SMatthew G. Knepley ierr = PetscFree7(funcVal,coords,realSpaceDer,v0,J,invJ,interpolantVec);CHKERRQ(ierr); 94340e14135SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 944b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 94540e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 946cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 947cb1e1211SMatthew G Knepley } 948cb1e1211SMatthew G Knepley 949a0845e3aSMatthew G. Knepley #undef __FUNCT__ 9502a16baeaSToby Isaac #define __FUNCT__ "DMComputeL2FieldDiff_Plex" 951c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 95273d901b8SMatthew G. Knepley { 95373d901b8SMatthew G. Knepley const PetscInt debug = 0; 95473d901b8SMatthew G. Knepley PetscSection section; 95573d901b8SMatthew G. Knepley PetscQuadrature quad; 95673d901b8SMatthew G. Knepley Vec localX; 95715496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 95873d901b8SMatthew G. Knepley PetscReal *coords, *v0, *J, *invJ, detJ; 95973d901b8SMatthew G. Knepley PetscReal *localDiff; 96015496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 9619ac3fadcSMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, numQuadPoints, cStart, cEnd, cEndInterior, c, field, fieldOffset; 96273d901b8SMatthew G. Knepley PetscErrorCode ierr; 96373d901b8SMatthew G. Knepley 96473d901b8SMatthew G. Knepley PetscFunctionBegin; 965c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 96673d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 96773d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 96873d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 969bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 97073d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 97173d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 97273d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 97315496722SMatthew G. Knepley PetscObject obj; 97415496722SMatthew G. Knepley PetscClassId id; 97573d901b8SMatthew G. Knepley PetscInt Nc; 97673d901b8SMatthew G. Knepley 97715496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 97815496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 97915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 98015496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 98115496722SMatthew G. Knepley 9820f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 9830f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 98415496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 98515496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 98615496722SMatthew G. Knepley 98715496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 98815496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 98915496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 99073d901b8SMatthew G. Knepley numComponents += Nc; 99173d901b8SMatthew G. Knepley } 99215496722SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 99315496722SMatthew G. Knepley ierr = PetscCalloc7(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,dim,&coords,dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 99473d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 9959ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 9969ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 99773d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 99873d901b8SMatthew G. Knepley PetscScalar *x = NULL; 99973d901b8SMatthew G. Knepley 10008e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 100173d901b8SMatthew G. Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 100273d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 100373d901b8SMatthew G. Knepley 100415496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 100515496722SMatthew G. Knepley PetscObject obj; 100615496722SMatthew G. Knepley PetscClassId id; 100773d901b8SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 100815496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 100973d901b8SMatthew G. Knepley 101015496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 101115496722SMatthew G. Knepley 101215496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 101315496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 101415496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 101515496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 101615496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 101773d901b8SMatthew G. Knepley if (debug) { 101873d901b8SMatthew G. Knepley char title[1024]; 101973d901b8SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 102015496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 102173d901b8SMatthew G. Knepley } 102273d901b8SMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 102315496722SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &quadPoints[q*dim], coords); 1024e735a8a9SMatthew G. Knepley ierr = (*funcs[field])(dim, time, coords, numFields, funcVal, ctx); 1025e735a8a9SMatthew G. Knepley if (ierr) { 1026e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1027e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1028e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 1029e735a8a9SMatthew G. Knepley ierr2 = PetscFree7(localDiff,funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr2); 1030e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1031e735a8a9SMatthew G. Knepley } 103215496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 103315496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 103415496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 103515496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1036c307172aSMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d point %g %g %g diff %g\n", c, field, dim > 0 ? coords[0] : 0., dim > 1 ? coords[1] : 0., dim > 2 ? coords[2] : 0., PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);} 103715496722SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ; 103873d901b8SMatthew G. Knepley } 103973d901b8SMatthew G. Knepley } 104015496722SMatthew G. Knepley fieldOffset += Nb*Nc; 104173d901b8SMatthew G. Knepley localDiff[field] += elemDiff; 104273d901b8SMatthew G. Knepley } 104373d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 104473d901b8SMatthew G. Knepley } 104573d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1046b2566f29SBarry Smith ierr = MPIU_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 104773d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]); 104815496722SMatthew G. Knepley ierr = PetscFree7(localDiff,funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr); 104973d901b8SMatthew G. Knepley PetscFunctionReturn(0); 105073d901b8SMatthew G. Knepley } 105173d901b8SMatthew G. Knepley 105273d901b8SMatthew G. Knepley #undef __FUNCT__ 1053e729f68cSMatthew G. Knepley #define __FUNCT__ "DMPlexComputeL2DiffVec" 1054e729f68cSMatthew G. Knepley /*@C 1055e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1056e729f68cSMatthew G. Knepley 1057e729f68cSMatthew G. Knepley Input Parameters: 1058e729f68cSMatthew G. Knepley + dm - The DM 10590163fd50SMatthew G. Knepley . time - The time 1060ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 1061e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1062e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1063e729f68cSMatthew G. Knepley 1064e729f68cSMatthew G. Knepley Output Parameter: 1065e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 1066e729f68cSMatthew G. Knepley 1067e729f68cSMatthew G. Knepley Level: developer 1068e729f68cSMatthew G. Knepley 1069b698f381SToby Isaac .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 1070e729f68cSMatthew G. Knepley @*/ 10710163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1072e729f68cSMatthew G. Knepley { 1073e729f68cSMatthew G. Knepley PetscSection section; 1074e729f68cSMatthew G. Knepley PetscQuadrature quad; 1075e729f68cSMatthew G. Knepley Vec localX; 1076e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 1077e729f68cSMatthew G. Knepley PetscReal *coords, *v0, *J, *invJ, detJ; 1078e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1079e729f68cSMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, numQuadPoints, cStart, cEnd, cEndInterior, c, field, fieldOffset; 1080e729f68cSMatthew G. Knepley PetscErrorCode ierr; 1081e729f68cSMatthew G. Knepley 1082e729f68cSMatthew G. Knepley PetscFunctionBegin; 1083e729f68cSMatthew G. Knepley ierr = VecSet(D, 0.0);CHKERRQ(ierr); 1084e729f68cSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1085e729f68cSMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 1086e729f68cSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 1087e729f68cSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 1088bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 1089e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1090e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1091e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1092e729f68cSMatthew G. Knepley PetscObject obj; 1093e729f68cSMatthew G. Knepley PetscClassId id; 1094e729f68cSMatthew G. Knepley PetscInt Nc; 1095e729f68cSMatthew G. Knepley 1096e729f68cSMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 1097e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1098e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1099e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1100e729f68cSMatthew G. Knepley 1101e729f68cSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 1102e729f68cSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 1103e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1104e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 1105e729f68cSMatthew G. Knepley 1106e729f68cSMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 1107e729f68cSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 1108e729f68cSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1109e729f68cSMatthew G. Knepley numComponents += Nc; 1110e729f68cSMatthew G. Knepley } 1111e729f68cSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 1112e729f68cSMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,dim,&coords,dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 1113e729f68cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1114e729f68cSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 1115e729f68cSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 1116e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1117e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 11186f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 1119e729f68cSMatthew G. Knepley 1120e729f68cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 1121e729f68cSMatthew G. Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 1122e729f68cSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1123e729f68cSMatthew G. Knepley 1124e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1125e729f68cSMatthew G. Knepley PetscObject obj; 1126e729f68cSMatthew G. Knepley PetscClassId id; 1127e729f68cSMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 1128e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1129e729f68cSMatthew G. Knepley 1130e729f68cSMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 1131e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1132e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 1133e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 1134e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 113523f34ed2SToby Isaac if (funcs[field]) { 1136e729f68cSMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 1137e729f68cSMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &quadPoints[q*dim], coords); 1138e735a8a9SMatthew G. Knepley ierr = (*funcs[field])(dim, time, coords, Nc, funcVal, ctx); 1139e735a8a9SMatthew G. Knepley if (ierr) { 1140e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1141e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1142e735a8a9SMatthew G. Knepley ierr2 = PetscFree6(funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr2); 1143e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 1144e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1145e735a8a9SMatthew G. Knepley } 1146e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 1147e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 1148e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1149e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1150e729f68cSMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ; 1151e729f68cSMatthew G. Knepley } 1152e729f68cSMatthew G. Knepley } 115323f34ed2SToby Isaac } 1154e729f68cSMatthew G. Knepley fieldOffset += Nb*Nc; 1155e729f68cSMatthew G. Knepley } 1156e729f68cSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 115723f34ed2SToby Isaac ierr = VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES);CHKERRQ(ierr); 1158e729f68cSMatthew G. Knepley } 1159e729f68cSMatthew G. Knepley ierr = PetscFree6(funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr); 1160e729f68cSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1161e729f68cSMatthew G. Knepley ierr = VecSqrtAbs(D);CHKERRQ(ierr); 1162e729f68cSMatthew G. Knepley PetscFunctionReturn(0); 1163e729f68cSMatthew G. Knepley } 1164e729f68cSMatthew G. Knepley 1165e729f68cSMatthew G. Knepley #undef __FUNCT__ 116673d901b8SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeIntegralFEM" 116773d901b8SMatthew G. Knepley /*@ 116873d901b8SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the local integral F from the local input X using pointwise functions specified by the user 116973d901b8SMatthew G. Knepley 117073d901b8SMatthew G. Knepley Input Parameters: 117173d901b8SMatthew G. Knepley + dm - The mesh 117273d901b8SMatthew G. Knepley . X - Local input vector 117373d901b8SMatthew G. Knepley - user - The user context 117473d901b8SMatthew G. Knepley 117573d901b8SMatthew G. Knepley Output Parameter: 117673d901b8SMatthew G. Knepley . integral - Local integral for each field 117773d901b8SMatthew G. Knepley 117873d901b8SMatthew G. Knepley Level: developer 117973d901b8SMatthew G. Knepley 118073d901b8SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 118173d901b8SMatthew G. Knepley @*/ 11820f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscReal *integral, void *user) 118373d901b8SMatthew G. Knepley { 118473d901b8SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1185b5a3613cSMatthew G. Knepley DM dmAux, dmGrad; 1186425f1808SMatthew G. Knepley Vec localX, A, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 11872764a2aaSMatthew G. Knepley PetscDS prob, probAux = NULL; 118873d901b8SMatthew G. Knepley PetscSection section, sectionAux; 1189b5a3613cSMatthew G. Knepley PetscFV fvm = NULL; 1190b5a3613cSMatthew G. Knepley PetscFECellGeom *cgeomFEM; 1191b5a3613cSMatthew G. Knepley PetscFVFaceGeom *fgeomFVM; 1192b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 119373d901b8SMatthew G. Knepley PetscScalar *u, *a = NULL; 1194b5a3613cSMatthew G. Knepley const PetscScalar *lgrad; 1195b5a3613cSMatthew G. Knepley PetscReal *lintegral; 1196b5a3613cSMatthew G. Knepley PetscInt *uOff, *uOff_x, *aOff = NULL; 1197b5a3613cSMatthew G. Knepley PetscInt dim, Nf, NfAux = 0, f, numCells, cStart, cEnd, cEndInterior, c; 11980f2d7e86SMatthew G. Knepley PetscInt totDim, totDimAux; 1199425f1808SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 120073d901b8SMatthew G. Knepley PetscErrorCode ierr; 120173d901b8SMatthew G. Knepley 120273d901b8SMatthew G. Knepley PetscFunctionBegin; 1203c1f031eeSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 120473d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 1205bdd6f66aSToby Isaac ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 120673d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 120773d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1208c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 120973d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 12102764a2aaSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 12112764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 1212b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 1213b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 121473d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 121573d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 12169ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 12179ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 121873d901b8SMatthew G. Knepley numCells = cEnd - cStart; 121973d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 122073d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 122173d901b8SMatthew G. Knepley if (dmAux) { 12222764a2aaSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 1223b5a3613cSMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 1224b5a3613cSMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 12252764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 1226b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 1227b5a3613cSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(probAux, &a, NULL, NULL);CHKERRQ(ierr); 122873d901b8SMatthew G. Knepley } 1229b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1230b5a3613cSMatthew G. Knepley PetscObject obj; 1231b5a3613cSMatthew G. Knepley PetscClassId id; 1232b5a3613cSMatthew G. Knepley 1233b5a3613cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1234b5a3613cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1235b5a3613cSMatthew G. Knepley if (id == PETSCFV_CLASSID) {useFVM = PETSC_TRUE; fvm = (PetscFV) obj;} 1236b5a3613cSMatthew G. Knepley } 1237b5a3613cSMatthew G. Knepley if (useFVM) { 1238b5a3613cSMatthew G. Knepley Vec grad; 1239b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 1240b5a3613cSMatthew G. Knepley PetscBool compGrad; 1241b5a3613cSMatthew G. Knepley 1242b5a3613cSMatthew G. Knepley ierr = PetscFVGetComputeGradients(fvm, &compGrad);CHKERRQ(ierr); 1243b5a3613cSMatthew G. Knepley ierr = PetscFVSetComputeGradients(fvm, PETSC_TRUE);CHKERRQ(ierr); 1244b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM);CHKERRQ(ierr); 1245b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGradientFVM(dm, fvm, faceGeometryFVM, cellGeometryFVM, &dmGrad);CHKERRQ(ierr); 1246b5a3613cSMatthew G. Knepley ierr = PetscFVSetComputeGradients(fvm, compGrad);CHKERRQ(ierr); 1247b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr); 1248b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1249b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 1250b5a3613cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 1251b5a3613cSMatthew G. Knepley ierr = DMGetGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1252b5a3613cSMatthew G. Knepley ierr = DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, localX, grad);CHKERRQ(ierr); 1253b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 1254b5a3613cSMatthew G. Knepley ierr = DMGetLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1255b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1256b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1257b5a3613cSMatthew G. Knepley ierr = DMRestoreGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1258b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 1259b5a3613cSMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_FALSE, localX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad);CHKERRQ(ierr); 1260b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1261b5a3613cSMatthew G. Knepley } 1262b5a3613cSMatthew G. Knepley ierr = PetscMalloc3(Nf,&lintegral,numCells*totDim,&u,numCells,&cgeomFEM);CHKERRQ(ierr); 12630f2d7e86SMatthew G. Knepley if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);} 1264c1f031eeSMatthew G. Knepley for (f = 0; f < Nf; ++f) {lintegral[f] = 0.0;} 126573d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 126673d901b8SMatthew G. Knepley PetscScalar *x = NULL; 126773d901b8SMatthew G. Knepley PetscInt i; 126873d901b8SMatthew G. Knepley 1269b5a3613cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, cgeomFEM[c].v0, cgeomFEM[c].J, cgeomFEM[c].invJ, &cgeomFEM[c].detJ);CHKERRQ(ierr); 1270b5a3613cSMatthew G. Knepley if (cgeomFEM[c].detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", cgeomFEM[c].detJ, c); 127173d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 12720f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 127373d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 127473d901b8SMatthew G. Knepley if (dmAux) { 127573d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 12760f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 127773d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 127873d901b8SMatthew G. Knepley } 127973d901b8SMatthew G. Knepley } 128073d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1281c1f031eeSMatthew G. Knepley PetscObject obj; 1282c1f031eeSMatthew G. Knepley PetscClassId id; 1283c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 128473d901b8SMatthew G. Knepley 1285c1f031eeSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1286c1f031eeSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1287c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1288c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1289c1f031eeSMatthew G. Knepley PetscQuadrature q; 1290c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 1291c1f031eeSMatthew G. Knepley 12920f2d7e86SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 1293c1f031eeSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 1294c1f031eeSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 1295c1f031eeSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 1296c1f031eeSMatthew G. Knepley blockSize = Nb*Nq; 129773d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 12980f2d7e86SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 129973d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 130073d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 130173d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 130273d901b8SMatthew G. Knepley offset = numCells - Nr; 1303b5a3613cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Ne, cgeomFEM, u, probAux, a, lintegral);CHKERRQ(ierr); 1304b5a3613cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Nr, &cgeomFEM[offset], &u[offset*totDim], probAux, &a[offset*totDimAux], lintegral);CHKERRQ(ierr); 1305c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1306b69edc29SMatthew G. Knepley /* PetscFV fv = (PetscFV) obj; */ 1307c1f031eeSMatthew G. Knepley PetscInt foff; 1308420e96edSMatthew G. Knepley PetscPointFunc obj_func; 1309b69edc29SMatthew G. Knepley PetscScalar lint; 1310c1f031eeSMatthew G. Knepley 1311c1f031eeSMatthew G. Knepley ierr = PetscDSGetObjective(prob, f, &obj_func);CHKERRQ(ierr); 1312c1f031eeSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, f, &foff);CHKERRQ(ierr); 1313c1f031eeSMatthew G. Knepley if (obj_func) { 1314c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 1315b5a3613cSMatthew G. Knepley PetscScalar *u_x; 1316b5a3613cSMatthew G. Knepley 1317b5a3613cSMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x);CHKERRQ(ierr); 1318b5a3613cSMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, a, NULL, NULL, 0.0, cgeomFVM[c].centroid, &lint); 1319b5a3613cSMatthew G. Knepley lintegral[f] += PetscRealPart(lint)*cgeomFVM[c].volume; 132073d901b8SMatthew G. Knepley } 1321c1f031eeSMatthew G. Knepley } 1322c1f031eeSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 1323c1f031eeSMatthew G. Knepley } 1324b5a3613cSMatthew G. Knepley if (useFVM) { 1325b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1326b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr); 1327b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1328b5a3613cSMatthew G. Knepley ierr = DMRestoreLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1329b5a3613cSMatthew G. Knepley ierr = VecDestroy(&faceGeometryFVM);CHKERRQ(ierr); 1330b5a3613cSMatthew G. Knepley ierr = VecDestroy(&cellGeometryFVM);CHKERRQ(ierr); 1331b5a3613cSMatthew G. Knepley ierr = DMDestroy(&dmGrad);CHKERRQ(ierr); 1332b5a3613cSMatthew G. Knepley } 133373d901b8SMatthew G. Knepley if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);} 133473d901b8SMatthew G. Knepley if (mesh->printFEM) { 133573d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Local integral:");CHKERRQ(ierr); 1336c1f031eeSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", lintegral[f]);CHKERRQ(ierr);} 133773d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr); 133873d901b8SMatthew G. Knepley } 133973d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1340b2566f29SBarry Smith ierr = MPIU_Allreduce(lintegral, integral, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject) dm));CHKERRQ(ierr); 1341b5a3613cSMatthew G. Knepley ierr = PetscFree3(lintegral,u,cgeomFEM);CHKERRQ(ierr); 1342c1f031eeSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 134373d901b8SMatthew G. Knepley PetscFunctionReturn(0); 134473d901b8SMatthew G. Knepley } 134573d901b8SMatthew G. Knepley 134673d901b8SMatthew G. Knepley #undef __FUNCT__ 134768132eb9SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInterpolatorNested" 1348d69c5d34SMatthew G. Knepley /*@ 134968132eb9SMatthew G. Knepley DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM. 1350d69c5d34SMatthew G. Knepley 1351d69c5d34SMatthew G. Knepley Input Parameters: 1352d69c5d34SMatthew G. Knepley + dmf - The fine mesh 1353d69c5d34SMatthew G. Knepley . dmc - The coarse mesh 1354d69c5d34SMatthew G. Knepley - user - The user context 1355d69c5d34SMatthew G. Knepley 1356d69c5d34SMatthew G. Knepley Output Parameter: 1357934789fcSMatthew G. Knepley . In - The interpolation matrix 1358d69c5d34SMatthew G. Knepley 1359d69c5d34SMatthew G. Knepley Level: developer 1360d69c5d34SMatthew G. Knepley 136168132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 1362d69c5d34SMatthew G. Knepley @*/ 136368132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, Mat In, void *user) 1364d69c5d34SMatthew G. Knepley { 1365d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 1366d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 13672764a2aaSMatthew G. Knepley PetscDS prob; 1368d69c5d34SMatthew G. Knepley PetscFE *feRef; 136997c42addSMatthew G. Knepley PetscFV *fvRef; 1370d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 1371d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 1372d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 13739ac3fadcSMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, cEndInterior, c; 13740f2d7e86SMatthew G. Knepley PetscInt cTotDim, rTotDim = 0; 1375d69c5d34SMatthew G. Knepley PetscErrorCode ierr; 1376d69c5d34SMatthew G. Knepley 1377d69c5d34SMatthew G. Knepley PetscFunctionBegin; 1378d69c5d34SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1379c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 1380d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 1381d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 1382d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 1383d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 1384d69c5d34SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 1385d69c5d34SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 13869ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 13879ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 13882764a2aaSMatthew G. Knepley ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr); 138997c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 1390d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 139197c42addSMatthew G. Knepley PetscObject obj; 139297c42addSMatthew G. Knepley PetscClassId id; 1393aa7890ccSMatthew G. Knepley PetscInt rNb = 0, Nc = 0; 1394d69c5d34SMatthew G. Knepley 139597c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 139697c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 139797c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 139897c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 139997c42addSMatthew G. Knepley 14000f2d7e86SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 1401d69c5d34SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr); 14020f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 140397c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 140497c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 140597c42addSMatthew G. Knepley PetscDualSpace Q; 140697c42addSMatthew G. Knepley 140797c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 140897c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 140997c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &rNb);CHKERRQ(ierr); 141097c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 141197c42addSMatthew G. Knepley } 14120f2d7e86SMatthew G. Knepley rTotDim += rNb*Nc; 1413d69c5d34SMatthew G. Knepley } 14142764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 14150f2d7e86SMatthew G. Knepley ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr); 14160f2d7e86SMatthew G. Knepley ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr); 1417d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 1418d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 1419d69c5d34SMatthew G. Knepley PetscQuadrature f; 1420d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 1421d69c5d34SMatthew G. Knepley PetscReal *points; 1422d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 1423d69c5d34SMatthew G. Knepley 1424d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 142597c42addSMatthew G. Knepley if (feRef[fieldI]) { 1426d69c5d34SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr); 14270f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr); 142897c42addSMatthew G. Knepley } else { 142997c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[fieldI], &Qref);CHKERRQ(ierr); 143097c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[fieldI], &Nc);CHKERRQ(ierr); 143197c42addSMatthew G. Knepley } 1432d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr); 1433d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 1434d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1435d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, NULL);CHKERRQ(ierr); 1436d69c5d34SMatthew G. Knepley npoints += Np; 1437d69c5d34SMatthew G. Knepley } 1438d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr); 1439d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1440d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1441d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 1442d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 1443d69c5d34SMatthew G. Knepley } 1444d69c5d34SMatthew G. Knepley 1445d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 144697c42addSMatthew G. Knepley PetscObject obj; 144797c42addSMatthew G. Knepley PetscClassId id; 1448d69c5d34SMatthew G. Knepley PetscReal *B; 1449aa7890ccSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j; 1450d69c5d34SMatthew G. Knepley 145197c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldJ, &obj);CHKERRQ(ierr); 145297c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 145397c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 145497c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1455d69c5d34SMatthew G. Knepley 1456d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 14570f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr); 14580f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 1459ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 1460ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 14617c927364SMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 14620f2d7e86SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr); 1463d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1464d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1465d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 1466d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 146736a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 14680f2d7e86SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p]; 146936a6d9c0SMatthew G. Knepley } 1470d69c5d34SMatthew G. Knepley } 1471d69c5d34SMatthew G. Knepley } 14720f2d7e86SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 1473ffe73a53SMatthew G. Knepley } 147497c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 147597c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 147697c42addSMatthew G. Knepley 147797c42addSMatthew G. Knepley /* Evaluate constant function at points */ 147897c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &NcJ);CHKERRQ(ierr); 147997c42addSMatthew G. Knepley cpdim = 1; 148097c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 148197c42addSMatthew G. Knepley if (fieldI == fieldJ) { 148297c42addSMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 148397c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 148497c42addSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 148597c42addSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 148697c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 148797c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 148897c42addSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += 1.0*qweights[p]; 148997c42addSMatthew G. Knepley } 149097c42addSMatthew G. Knepley } 149197c42addSMatthew G. Knepley } 149297c42addSMatthew G. Knepley } 149397c42addSMatthew G. Knepley } 149436a6d9c0SMatthew G. Knepley offsetJ += cpdim*NcJ; 1495d69c5d34SMatthew G. Knepley } 1496d69c5d34SMatthew G. Knepley offsetI += fpdim*Nc; 1497549a8adaSMatthew G. Knepley ierr = PetscFree(points);CHKERRQ(ierr); 1498d69c5d34SMatthew G. Knepley } 14990f2d7e86SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);} 15007f5b169aSMatthew G. Knepley /* Preallocate matrix */ 15017f5b169aSMatthew G. Knepley { 1502c094ef40SMatthew G. Knepley Mat preallocator; 1503c094ef40SMatthew G. Knepley PetscScalar *vals; 1504c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 1505c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 15067f5b169aSMatthew G. Knepley 1507c094ef40SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, &locCols);CHKERRQ(ierr); 1508c094ef40SMatthew G. Knepley ierr = MatCreate(PetscObjectComm((PetscObject) In), &preallocator);CHKERRQ(ierr); 1509c094ef40SMatthew G. Knepley ierr = MatSetType(preallocator, MATPREALLOCATOR);CHKERRQ(ierr); 1510c094ef40SMatthew G. Knepley ierr = MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 1511c094ef40SMatthew G. Knepley ierr = MatSetUp(preallocator);CHKERRQ(ierr); 1512c094ef40SMatthew G. Knepley ierr = PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr); 15137f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 15147f5b169aSMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr); 1515c094ef40SMatthew G. Knepley ierr = MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES);CHKERRQ(ierr); 15167f5b169aSMatthew G. Knepley } 1517c094ef40SMatthew G. Knepley ierr = PetscFree3(vals,cellCIndices,cellFIndices);CHKERRQ(ierr); 1518c094ef40SMatthew G. Knepley ierr = MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1519c094ef40SMatthew G. Knepley ierr = MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1520c094ef40SMatthew G. Knepley ierr = MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In);CHKERRQ(ierr); 1521c094ef40SMatthew G. Knepley ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 15227f5b169aSMatthew G. Knepley } 15237f5b169aSMatthew G. Knepley /* Fill matrix */ 15247f5b169aSMatthew G. Knepley ierr = MatZeroEntries(In);CHKERRQ(ierr); 1525d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1526934789fcSMatthew G. Knepley ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr); 1527d69c5d34SMatthew G. Knepley } 1528549a8adaSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 152997c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 1530549a8adaSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 1531934789fcSMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1532934789fcSMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1533d69c5d34SMatthew G. Knepley if (mesh->printFEM) { 1534d69c5d34SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_WORLD, "%s:\n", name);CHKERRQ(ierr); 1535934789fcSMatthew G. Knepley ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr); 1536934789fcSMatthew G. Knepley ierr = MatView(In, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1537d69c5d34SMatthew G. Knepley } 1538d69c5d34SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1539d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 1540d69c5d34SMatthew G. Knepley } 15416c73c22cSMatthew G. Knepley 15426c73c22cSMatthew G. Knepley #undef __FUNCT__ 154368132eb9SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInterpolatorGeneral" 154468132eb9SMatthew G. Knepley /*@ 154568132eb9SMatthew G. Knepley DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM. 154668132eb9SMatthew G. Knepley 154768132eb9SMatthew G. Knepley Input Parameters: 154868132eb9SMatthew G. Knepley + dmf - The fine mesh 154968132eb9SMatthew G. Knepley . dmc - The coarse mesh 155068132eb9SMatthew G. Knepley - user - The user context 155168132eb9SMatthew G. Knepley 155268132eb9SMatthew G. Knepley Output Parameter: 155368132eb9SMatthew G. Knepley . In - The interpolation matrix 155468132eb9SMatthew G. Knepley 155568132eb9SMatthew G. Knepley Level: developer 155668132eb9SMatthew G. Knepley 155768132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 155868132eb9SMatthew G. Knepley @*/ 155968132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 15604ef9d792SMatthew G. Knepley { 156164e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 156264e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 15634ef9d792SMatthew G. Knepley PetscDS prob; 15644ef9d792SMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 15654ef9d792SMatthew G. Knepley PetscHashJK ht; 15664ef9d792SMatthew G. Knepley PetscLayout rLayout; 15674ef9d792SMatthew G. Knepley PetscInt *dnz, *onz; 15684ef9d792SMatthew G. Knepley PetscInt locRows, rStart, rEnd; 15694ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 15704ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 15714ef9d792SMatthew G. Knepley PetscScalar *elemMat; 15724ef9d792SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 15734ef9d792SMatthew G. Knepley PetscErrorCode ierr; 15744ef9d792SMatthew G. Knepley 15754ef9d792SMatthew G. Knepley PetscFunctionBegin; 157677711781SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 15774ef9d792SMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 15784ef9d792SMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 15794ef9d792SMatthew G. Knepley ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr); 15804ef9d792SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 15814ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 15824ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 15834ef9d792SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 15844ef9d792SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 15854ef9d792SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 15864ef9d792SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 15874ef9d792SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 15884ef9d792SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 15894ef9d792SMatthew G. Knepley ierr = PetscMalloc1(totDim*totDim, &elemMat);CHKERRQ(ierr); 15904ef9d792SMatthew G. Knepley 15914ef9d792SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr); 15924ef9d792SMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr); 15934ef9d792SMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 15944ef9d792SMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 15954ef9d792SMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 15964ef9d792SMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 15974ef9d792SMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 15984ef9d792SMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 15994ef9d792SMatthew G. Knepley ierr = PetscHashJKCreate(&ht);CHKERRQ(ierr); 16004ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 16014ef9d792SMatthew G. Knepley PetscObject obj; 16024ef9d792SMatthew G. Knepley PetscClassId id; 1603c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 16044ef9d792SMatthew G. Knepley PetscQuadrature f; 160517f047d8SMatthew G. Knepley const PetscReal *qpoints; 160617f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 16074ef9d792SMatthew G. Knepley 16084ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 16094ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 16104ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 16114ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 16124ef9d792SMatthew G. Knepley 16134ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 16144ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 16154ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 16164ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 16174ef9d792SMatthew G. Knepley 16184ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 16194ef9d792SMatthew G. Knepley Nc = 1; 16204ef9d792SMatthew G. Knepley } 16214ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 16224ef9d792SMatthew G. Knepley /* For each fine grid cell */ 16234ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 16244ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 16254ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 16264ef9d792SMatthew G. Knepley 16276ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 16284ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 16294ef9d792SMatthew G. Knepley if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc); 16304ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 16314ef9d792SMatthew G. Knepley Vec pointVec; 16324ef9d792SMatthew G. Knepley PetscScalar *pV; 16333a93e3b7SToby Isaac PetscSF coarseCellSF = NULL; 16343a93e3b7SToby Isaac const PetscSFNode *coarseCells; 16354ef9d792SMatthew G. Knepley PetscInt numCoarseCells, q, r, c; 16364ef9d792SMatthew G. Knepley 16374ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 16384ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 16394ef9d792SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 16404ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 16414ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 16424ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 16434ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 16444ef9d792SMatthew G. Knepley /* Transform point to real space */ 16454ef9d792SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x); 16464ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 16474ef9d792SMatthew G. Knepley } 16484ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 16494ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 16503a93e3b7SToby Isaac ierr = DMLocatePoints(dmc, pointVec, &coarseCellSF);CHKERRQ(ierr); 16513a93e3b7SToby Isaac ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 16524ef9d792SMatthew G. Knepley /* Update preallocation info */ 16533a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 16543a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 16554ef9d792SMatthew G. Knepley for (r = 0; r < Nc; ++r) { 16564ef9d792SMatthew G. Knepley PetscHashJKKey key; 16574ef9d792SMatthew G. Knepley PetscHashJKIter missing, iter; 16584ef9d792SMatthew G. Knepley 16594ef9d792SMatthew G. Knepley key.j = findices[i*Nc+r]; 16604ef9d792SMatthew G. Knepley if (key.j < 0) continue; 16614ef9d792SMatthew G. Knepley /* Get indices for coarse elements */ 16624ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 16633a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 16644ef9d792SMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 16654ef9d792SMatthew G. Knepley key.k = cindices[c]; 16664ef9d792SMatthew G. Knepley if (key.k < 0) continue; 16674ef9d792SMatthew G. Knepley ierr = PetscHashJKPut(ht, key, &missing, &iter);CHKERRQ(ierr); 16684ef9d792SMatthew G. Knepley if (missing) { 16694ef9d792SMatthew G. Knepley ierr = PetscHashJKSet(ht, iter, 1);CHKERRQ(ierr); 16704ef9d792SMatthew G. Knepley if ((key.k >= rStart) && (key.k < rEnd)) ++dnz[key.j-rStart]; 16714ef9d792SMatthew G. Knepley else ++onz[key.j-rStart]; 16724ef9d792SMatthew G. Knepley } 16734ef9d792SMatthew G. Knepley } 16743a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 16754ef9d792SMatthew G. Knepley } 16764ef9d792SMatthew G. Knepley } 16773a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 16784ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 16794ef9d792SMatthew G. Knepley } 168046bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 16814ef9d792SMatthew G. Knepley } 16824ef9d792SMatthew G. Knepley } 16834ef9d792SMatthew G. Knepley ierr = PetscHashJKDestroy(&ht);CHKERRQ(ierr); 16844ef9d792SMatthew G. Knepley ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 16854ef9d792SMatthew G. Knepley ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 16864ef9d792SMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 16874ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 16884ef9d792SMatthew G. Knepley PetscObject obj; 16894ef9d792SMatthew G. Knepley PetscClassId id; 1690c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 16914ef9d792SMatthew G. Knepley PetscQuadrature f; 16924ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 169317f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 16944ef9d792SMatthew G. Knepley 16954ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 16964ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 16974ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 16984ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 16994ef9d792SMatthew G. Knepley 17004ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 17014ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 17024ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 17034ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 17044ef9d792SMatthew G. Knepley 17054ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 17064ef9d792SMatthew G. Knepley Nc = 1; 17074ef9d792SMatthew G. Knepley } 17084ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 17094ef9d792SMatthew G. Knepley /* For each fine grid cell */ 17104ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 17114ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 17124ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 17134ef9d792SMatthew G. Knepley 17146ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 17154ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 17164ef9d792SMatthew G. Knepley if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc); 17174ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 17184ef9d792SMatthew G. Knepley Vec pointVec; 17194ef9d792SMatthew G. Knepley PetscScalar *pV; 172012111d7cSToby Isaac PetscSF coarseCellSF = NULL; 17213a93e3b7SToby Isaac const PetscSFNode *coarseCells; 172217f047d8SMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 17234ef9d792SMatthew G. Knepley 17244ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 17254ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 17264ef9d792SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, &qweights);CHKERRQ(ierr); 17274ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 17284ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 17294ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 17304ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 17314ef9d792SMatthew G. Knepley /* Transform point to real space */ 17324ef9d792SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x); 17334ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 17344ef9d792SMatthew G. Knepley } 17354ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 17364ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 17373a93e3b7SToby Isaac ierr = DMLocatePoints(dmc, pointVec, &coarseCellSF);CHKERRQ(ierr); 17384ef9d792SMatthew G. Knepley /* Update preallocation info */ 17393a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 17403a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 17414ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 17424ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 1743826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 1744826eb36dSMatthew G. Knepley 17453a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 17464ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 17473a93e3b7SToby Isaac ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 1748e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 1749826eb36dSMatthew G. Knepley CoordinatesRealToRef(dim, dim, v0c, invJc, pVReal, x); 17504ef9d792SMatthew G. Knepley 17514ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 17524ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 17534ef9d792SMatthew G. Knepley PetscReal *B; 17544ef9d792SMatthew G. Knepley 17554ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 17564ef9d792SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 17574ef9d792SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr); 17584ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 17594ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 17604ef9d792SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = B[j*Nc + c]*qweights[ccell]; 17614ef9d792SMatthew G. Knepley } 17624ef9d792SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 17634ef9d792SMatthew G. Knepley } else { 17644ef9d792SMatthew G. Knepley cpdim = 1; 17654ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 17664ef9d792SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = 1.0*qweights[ccell]; 17674ef9d792SMatthew G. Knepley } 17684ef9d792SMatthew G. Knepley } 17694ef9d792SMatthew G. Knepley /* Update interpolator */ 177064e98e1dSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, Nc, numCIndices, elemMat);CHKERRQ(ierr);} 17714ef9d792SMatthew G. Knepley ierr = MatSetValues(In, Nc, &findices[i*Nc], numCIndices, cindices, elemMat, INSERT_VALUES);CHKERRQ(ierr); 17723a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 17734ef9d792SMatthew G. Knepley } 17744ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 17753a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 17764ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 17774ef9d792SMatthew G. Knepley } 177846bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 17794ef9d792SMatthew G. Knepley } 17804ef9d792SMatthew G. Knepley } 17814ef9d792SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 17824ef9d792SMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 17834ef9d792SMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 17844ef9d792SMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17854ef9d792SMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 178677711781SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 17874ef9d792SMatthew G. Knepley PetscFunctionReturn(0); 17884ef9d792SMatthew G. Knepley } 17894ef9d792SMatthew G. Knepley 17904ef9d792SMatthew G. Knepley #undef __FUNCT__ 17917c927364SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInjectorFEM" 17927c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 17937c927364SMatthew G. Knepley { 1794e9d4ef1bSMatthew G. Knepley PetscDS prob; 17957c927364SMatthew G. Knepley PetscFE *feRef; 179697c42addSMatthew G. Knepley PetscFV *fvRef; 17977c927364SMatthew G. Knepley Vec fv, cv; 17987c927364SMatthew G. Knepley IS fis, cis; 17997c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 18007c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 18010bd915a7SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, cEndInterior, c, dim, d, startC, endC, offsetC, offsetF, m; 18027c927364SMatthew G. Knepley PetscErrorCode ierr; 18037c927364SMatthew G. Knepley 18047c927364SMatthew G. Knepley PetscFunctionBegin; 180575a69067SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1806c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 18077c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 18087c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 18097c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 18107c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 18117c927364SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 18127c927364SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 18139ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 18149ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 1815e9d4ef1bSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 181697c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 18177c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 181897c42addSMatthew G. Knepley PetscObject obj; 181997c42addSMatthew G. Knepley PetscClassId id; 1820aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 18217c927364SMatthew G. Knepley 182297c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 182397c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 182497c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 182597c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 182697c42addSMatthew G. Knepley 18277c927364SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 18287c927364SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr); 18297c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 183097c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 183197c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 183297c42addSMatthew G. Knepley PetscDualSpace Q; 183397c42addSMatthew G. Knepley 183497c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 183597c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 183697c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fNb);CHKERRQ(ierr); 183797c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 183897c42addSMatthew G. Knepley } 18397c927364SMatthew G. Knepley fTotDim += fNb*Nc; 18407c927364SMatthew G. Knepley } 1841e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 18427c927364SMatthew G. Knepley ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr); 18437c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 18447c927364SMatthew G. Knepley PetscFE feC; 184597c42addSMatthew G. Knepley PetscFV fvC; 18467c927364SMatthew G. Knepley PetscDualSpace QF, QC; 18477c927364SMatthew G. Knepley PetscInt NcF, NcC, fpdim, cpdim; 18487c927364SMatthew G. Knepley 184997c42addSMatthew G. Knepley if (feRef[field]) { 1850e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr); 18517c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr); 18527c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr); 18537c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr); 18547c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 18557c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr); 18567c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 185797c42addSMatthew G. Knepley } else { 185897c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC);CHKERRQ(ierr); 185997c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvC, &NcC);CHKERRQ(ierr); 186097c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[field], &NcF);CHKERRQ(ierr); 186197c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[field], &QF);CHKERRQ(ierr); 186297c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 186397c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvC, &QC);CHKERRQ(ierr); 186497c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 186597c42addSMatthew G. Knepley } 186697c42addSMatthew G. Knepley if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC); 18677c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 18687c927364SMatthew G. Knepley PetscQuadrature cfunc; 18697c927364SMatthew G. Knepley const PetscReal *cqpoints; 18707c927364SMatthew G. Knepley PetscInt NpC; 187197c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 18727c927364SMatthew G. Knepley 18737c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr); 18747c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(cfunc, NULL, &NpC, &cqpoints, NULL);CHKERRQ(ierr); 187597c42addSMatthew G. Knepley if (NpC != 1 && feRef[field]) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 18767c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 18777c927364SMatthew G. Knepley PetscQuadrature ffunc; 18787c927364SMatthew G. Knepley const PetscReal *fqpoints; 18797c927364SMatthew G. Knepley PetscReal sum = 0.0; 18807c927364SMatthew G. Knepley PetscInt NpF, comp; 18817c927364SMatthew G. Knepley 18827c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr); 18837c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(ffunc, NULL, &NpF, &fqpoints, NULL);CHKERRQ(ierr); 18847c927364SMatthew G. Knepley if (NpC != NpF) continue; 18857c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 18867c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 18877c927364SMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 18887c927364SMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+f)*NcF+comp; 18897c927364SMatthew G. Knepley } 189097c42addSMatthew G. Knepley found = PETSC_TRUE; 18917c927364SMatthew G. Knepley break; 18927c927364SMatthew G. Knepley } 189397c42addSMatthew G. Knepley if (!found) { 189497c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 189597c42addSMatthew G. Knepley if (fvRef[field]) { 189697c42addSMatthew G. Knepley PetscInt comp; 189797c42addSMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 189897c42addSMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+0)*NcF+comp; 189997c42addSMatthew G. Knepley } 190097c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 190197c42addSMatthew G. Knepley } 19027c927364SMatthew G. Knepley } 19037c927364SMatthew G. Knepley offsetC += cpdim*NcC; 19047c927364SMatthew G. Knepley offsetF += fpdim*NcF; 19057c927364SMatthew G. Knepley } 190697c42addSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);ierr = PetscFVDestroy(&fvRef[f]);CHKERRQ(ierr);} 190797c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 19087c927364SMatthew G. Knepley 19097c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr); 19107c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr); 19110bd915a7SMatthew G. Knepley ierr = VecGetOwnershipRange(cv, &startC, &endC);CHKERRQ(ierr); 19127c927364SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr); 19137c927364SMatthew G. Knepley ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr); 1914aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr); 1915aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr); 19167c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 19177c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 19187c927364SMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr); 19197c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 19200bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 19217c927364SMatthew G. Knepley if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 19227c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 19237c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 19247c927364SMatthew G. Knepley } 19257c927364SMatthew G. Knepley } 19267c927364SMatthew G. Knepley ierr = PetscFree(cmap);CHKERRQ(ierr); 19277c927364SMatthew G. Knepley ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr); 19287c927364SMatthew G. Knepley 19297c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr); 19307c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr); 19317c927364SMatthew G. Knepley ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr); 19327c927364SMatthew G. Knepley ierr = ISDestroy(&cis);CHKERRQ(ierr); 19337c927364SMatthew G. Knepley ierr = ISDestroy(&fis);CHKERRQ(ierr); 19347c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr); 19357c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr); 193675a69067SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1937cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1938cb1e1211SMatthew G Knepley } 1939