1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h> 5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 8a0845e3aSMatthew G. Knepley 95f0b18bfSMatthew G. Knepley PetscBool Clementcite = PETSC_FALSE; 105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n" 115f0b18bfSMatthew G. Knepley " title = {Approximation by finite element functions using local regularization},\n" 125f0b18bfSMatthew G. Knepley " author = {Philippe Cl{\\'e}ment},\n" 135f0b18bfSMatthew G. Knepley " journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n" 145f0b18bfSMatthew G. Knepley " volume = {9},\n" 155f0b18bfSMatthew G. Knepley " number = {R2},\n" 165f0b18bfSMatthew G. Knepley " pages = {77--84},\n" 175f0b18bfSMatthew G. Knepley " year = {1975}\n}\n"; 185f0b18bfSMatthew G. Knepley 19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 20d71ae5a4SJacob Faibussowitsch { 212f856554SMatthew G. Knepley PetscBool isPlex; 222f856554SMatthew G. Knepley 232f856554SMatthew G. Knepley PetscFunctionBegin; 249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 252f856554SMatthew G. Knepley if (isPlex) { 262f856554SMatthew G. Knepley *plex = dm; 279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 282f856554SMatthew G. Knepley } else { 299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 302f856554SMatthew G. Knepley if (!*plex) { 319566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 33cbf8eb3cSStefano Zampini } else { 34cbf8eb3cSStefano Zampini PetscCall(PetscObjectReference((PetscObject)*plex)); 35cbf8eb3cSStefano Zampini } 362f856554SMatthew G. Knepley if (copy) { 372f856554SMatthew G. Knepley DMSubDomainHookLink link; 389a2a23afSMatthew G. Knepley 39cbf8eb3cSStefano Zampini PetscCall(DMCopyDS(dm, *plex)); 409566063dSJacob Faibussowitsch PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 419a2a23afSMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 422f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 439566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx)); 442f856554SMatthew G. Knepley } 452f856554SMatthew G. Knepley } 462f856554SMatthew G. Knepley } 473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 482f856554SMatthew G. Knepley } 492f856554SMatthew G. Knepley 50d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx) 51d71ae5a4SJacob Faibussowitsch { 529b6f715bSMatthew G. Knepley PetscFEGeom *geom = (PetscFEGeom *)ctx; 539b6f715bSMatthew G. Knepley 549b6f715bSMatthew G. Knepley PetscFunctionBegin; 559566063dSJacob Faibussowitsch PetscCall(PetscFEGeomDestroy(&geom)); 563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 579b6f715bSMatthew G. Knepley } 589b6f715bSMatthew G. Knepley 59d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 60d71ae5a4SJacob Faibussowitsch { 619b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 629b6f715bSMatthew G. Knepley PetscObjectId id; 639b6f715bSMatthew G. Knepley PetscContainer container; 649b6f715bSMatthew G. Knepley 659b6f715bSMatthew G. Knepley PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 6763a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id)); 689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 699b6f715bSMatthew G. Knepley if (container) { 709566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 719b6f715bSMatthew G. Knepley } else { 729566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 739566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 749566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 759566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 769566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 779566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 789b6f715bSMatthew G. Knepley } 793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 809b6f715bSMatthew G. Knepley } 819b6f715bSMatthew G. Knepley 82d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 83d71ae5a4SJacob Faibussowitsch { 849b6f715bSMatthew G. Knepley PetscFunctionBegin; 859b6f715bSMatthew G. Knepley *geom = NULL; 863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 879b6f715bSMatthew G. Knepley } 889b6f715bSMatthew G. Knepley 8946fa42a0SMatthew G. Knepley /*@ 9046fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9146fa42a0SMatthew G. Knepley 9220f4b53cSBarry Smith Not Collective 9346fa42a0SMatthew G. Knepley 944165533cSJose E. Roman Input Parameters: 95a1cb98faSBarry Smith + dm - the `DM` 9646fa42a0SMatthew G. Knepley - unit - The SI unit 9746fa42a0SMatthew G. Knepley 984165533cSJose E. Roman Output Parameter: 9946fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 10046fa42a0SMatthew G. Knepley 10146fa42a0SMatthew G. Knepley Level: advanced 10246fa42a0SMatthew G. Knepley 1031cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit` 10446fa42a0SMatthew G. Knepley @*/ 105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 106d71ae5a4SJacob Faibussowitsch { 107cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 108cb1e1211SMatthew G Knepley 109cb1e1211SMatthew G Knepley PetscFunctionBegin; 110cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1114f572ea9SToby Isaac PetscAssertPointer(scale, 3); 112cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 1133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 114cb1e1211SMatthew G Knepley } 115cb1e1211SMatthew G Knepley 11646fa42a0SMatthew G. Knepley /*@ 11746fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11846fa42a0SMatthew G. Knepley 11920f4b53cSBarry Smith Not Collective 12046fa42a0SMatthew G. Knepley 1214165533cSJose E. Roman Input Parameters: 122a1cb98faSBarry Smith + dm - the `DM` 12346fa42a0SMatthew G. Knepley . unit - The SI unit 12446fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12546fa42a0SMatthew G. Knepley 12646fa42a0SMatthew G. Knepley Level: advanced 12746fa42a0SMatthew G. Knepley 1281cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit` 12946fa42a0SMatthew G. Knepley @*/ 130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 131d71ae5a4SJacob Faibussowitsch { 132cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 133cb1e1211SMatthew G Knepley 134cb1e1211SMatthew G Knepley PetscFunctionBegin; 135cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 136cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 1373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138cb1e1211SMatthew G Knepley } 139cb1e1211SMatthew G Knepley 140d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed_Plex(DM dm, PetscBool *useCeed) 141d2b2dc1eSMatthew G. Knepley { 142d2b2dc1eSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 143d2b2dc1eSMatthew G. Knepley 144d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 145d2b2dc1eSMatthew G. Knepley *useCeed = mesh->useCeed; 146d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 147d2b2dc1eSMatthew G. Knepley } 148d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed_Plex(DM dm, PetscBool useCeed) 149d2b2dc1eSMatthew G. Knepley { 150d2b2dc1eSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 151d2b2dc1eSMatthew G. Knepley 152d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 153d2b2dc1eSMatthew G. Knepley mesh->useCeed = useCeed; 154d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 155d2b2dc1eSMatthew G. Knepley } 156d2b2dc1eSMatthew G. Knepley 157d2b2dc1eSMatthew G. Knepley /*@ 158d2b2dc1eSMatthew G. Knepley DMPlexGetUseCeed - Get flag for using the LibCEED backend 159d2b2dc1eSMatthew G. Knepley 160d2b2dc1eSMatthew G. Knepley Not collective 161d2b2dc1eSMatthew G. Knepley 162d2b2dc1eSMatthew G. Knepley Input Parameter: 163d2b2dc1eSMatthew G. Knepley . dm - The `DM` 164d2b2dc1eSMatthew G. Knepley 165d2b2dc1eSMatthew G. Knepley Output Parameter: 166d2b2dc1eSMatthew G. Knepley . useCeed - The flag 167d2b2dc1eSMatthew G. Knepley 168d2b2dc1eSMatthew G. Knepley Level: intermediate 169d2b2dc1eSMatthew G. Knepley 170d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetUseCeed()` 171d2b2dc1eSMatthew G. Knepley @*/ 172d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed(DM dm, PetscBool *useCeed) 173d2b2dc1eSMatthew G. Knepley { 174d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 175d2b2dc1eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 176d2b2dc1eSMatthew G. Knepley PetscAssertPointer(useCeed, 2); 177d2b2dc1eSMatthew G. Knepley *useCeed = PETSC_FALSE; 178d2b2dc1eSMatthew G. Knepley PetscTryMethod(dm, "DMPlexGetUseCeed_C", (DM, PetscBool *), (dm, useCeed)); 179d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 180d2b2dc1eSMatthew G. Knepley } 181d2b2dc1eSMatthew G. Knepley 182d2b2dc1eSMatthew G. Knepley /*@ 183d2b2dc1eSMatthew G. Knepley DMPlexSetUseCeed - Set flag for using the LibCEED backend 184d2b2dc1eSMatthew G. Knepley 185d2b2dc1eSMatthew G. Knepley Not collective 186d2b2dc1eSMatthew G. Knepley 187d2b2dc1eSMatthew G. Knepley Input Parameters: 188d2b2dc1eSMatthew G. Knepley + dm - The `DM` 189d2b2dc1eSMatthew G. Knepley - useCeed - The flag 190d2b2dc1eSMatthew G. Knepley 191d2b2dc1eSMatthew G. Knepley Level: intermediate 192d2b2dc1eSMatthew G. Knepley 193fe8e7dddSPierre Jolivet .seealso: `DMPlexGetUseCeed()` 194d2b2dc1eSMatthew G. Knepley @*/ 195d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed(DM dm, PetscBool useCeed) 196d2b2dc1eSMatthew G. Knepley { 197d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 198d2b2dc1eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 199d2b2dc1eSMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, useCeed, 2); 200d2b2dc1eSMatthew G. Knepley PetscUseMethod(dm, "DMPlexSetUseCeed_C", (DM, PetscBool), (dm, useCeed)); 201d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 202d2b2dc1eSMatthew G. Knepley } 203d2b2dc1eSMatthew G. Knepley 204e8e188d2SZach Atkins /*@ 205e8e188d2SZach Atkins DMPlexGetUseMatClosurePermutation - Get flag for using a closure permutation for matrix insertion 206e8e188d2SZach Atkins 207e8e188d2SZach Atkins Not collective 208e8e188d2SZach Atkins 209e8e188d2SZach Atkins Input Parameter: 210e8e188d2SZach Atkins . dm - The `DM` 211e8e188d2SZach Atkins 212e8e188d2SZach Atkins Output Parameter: 213e8e188d2SZach Atkins . useClPerm - The flag 214e8e188d2SZach Atkins 215e8e188d2SZach Atkins Level: intermediate 216e8e188d2SZach Atkins 217e8e188d2SZach Atkins .seealso: `DMPlexSetUseMatClosurePermutation()` 218e8e188d2SZach Atkins @*/ 219e8e188d2SZach Atkins PetscErrorCode DMPlexGetUseMatClosurePermutation(DM dm, PetscBool *useClPerm) 220e8e188d2SZach Atkins { 221e8e188d2SZach Atkins DM_Plex *mesh = (DM_Plex *)dm->data; 222e8e188d2SZach Atkins 223e8e188d2SZach Atkins PetscFunctionBegin; 224e8e188d2SZach Atkins PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 225e8e188d2SZach Atkins PetscAssertPointer(useClPerm, 2); 226e8e188d2SZach Atkins *useClPerm = mesh->useMatClPerm; 227e8e188d2SZach Atkins PetscFunctionReturn(PETSC_SUCCESS); 228e8e188d2SZach Atkins } 229e8e188d2SZach Atkins 230e8e188d2SZach Atkins /*@ 231e8e188d2SZach Atkins DMPlexSetUseMatClosurePermutation - Set flag for using a closure permutation for matrix insertion 232e8e188d2SZach Atkins 233e8e188d2SZach Atkins Not collective 234e8e188d2SZach Atkins 235e8e188d2SZach Atkins Input Parameters: 236e8e188d2SZach Atkins + dm - The `DM` 237e8e188d2SZach Atkins - useClPerm - The flag 238e8e188d2SZach Atkins 239e8e188d2SZach Atkins Level: intermediate 240e8e188d2SZach Atkins 241e8e188d2SZach Atkins .seealso: `DMPlexGetUseMatClosurePermutation()` 242e8e188d2SZach Atkins @*/ 243e8e188d2SZach Atkins PetscErrorCode DMPlexSetUseMatClosurePermutation(DM dm, PetscBool useClPerm) 244e8e188d2SZach Atkins { 245e8e188d2SZach Atkins DM_Plex *mesh = (DM_Plex *)dm->data; 246e8e188d2SZach Atkins 247e8e188d2SZach Atkins PetscFunctionBegin; 248e8e188d2SZach Atkins PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 249e8e188d2SZach Atkins PetscValidLogicalCollectiveBool(dm, useClPerm, 2); 250e8e188d2SZach Atkins mesh->useMatClPerm = useClPerm; 251e8e188d2SZach Atkins PetscFunctionReturn(PETSC_SUCCESS); 252e8e188d2SZach Atkins } 253e8e188d2SZach Atkins 254d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx) 255d71ae5a4SJacob Faibussowitsch { 2569371c9d4SSatish Balay const PetscInt eps[3][3][3] = { 2579371c9d4SSatish Balay {{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, 2589371c9d4SSatish Balay {{0, 0, -1}, {0, 0, 0}, {1, 0, 0} }, 2599371c9d4SSatish Balay {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0} } 2609371c9d4SSatish Balay }; 261026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *)ctx; 262ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 263026175e5SToby Isaac PetscInt d = ctxInt[1]; 264026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 265026175e5SToby Isaac 266ad917190SMatthew G. Knepley PetscFunctionBegin; 26763a3b9bcSJacob Faibussowitsch PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2); 268026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 269026175e5SToby Isaac if (d < dim) { 27012adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 271ad917190SMatthew G. Knepley } else { 272026175e5SToby Isaac for (i = 0; i < dim; i++) { 2739371c9d4SSatish Balay for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ } 274026175e5SToby Isaac } 275026175e5SToby Isaac } 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277026175e5SToby Isaac } 278026175e5SToby Isaac 279cc4e42d9SMartin Diehl /*@ 28012adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 281cb1e1211SMatthew G Knepley 28220f4b53cSBarry Smith Collective 283cb1e1211SMatthew G Knepley 2844165533cSJose E. Roman Input Parameters: 285a1cb98faSBarry Smith + dm - the `DM` 28656cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default 287cb1e1211SMatthew G Knepley 2884165533cSJose E. Roman Output Parameter: 289cb1e1211SMatthew G Knepley . sp - the null space 290cb1e1211SMatthew G Knepley 291cb1e1211SMatthew G Knepley Level: advanced 292cb1e1211SMatthew G Knepley 293a1cb98faSBarry Smith Note: 294a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 295a1cb98faSBarry Smith 2961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG` 297cb1e1211SMatthew G Knepley @*/ 298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp) 299d71ae5a4SJacob Faibussowitsch { 30056cf3b9cSMatthew G. Knepley PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *); 301cb1e1211SMatthew G Knepley MPI_Comm comm; 302026175e5SToby Isaac Vec mode[6]; 303026175e5SToby Isaac PetscSection section, globalSection; 30456cf3b9cSMatthew G. Knepley PetscInt dim, dimEmbed, Nf, n, m, mmin, d, i, j; 305db14aad5SMatthew G. Knepley void **ctxs; 306cb1e1211SMatthew G Knepley 307cb1e1211SMatthew G Knepley PetscFunctionBegin; 3089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3099566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3109566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 3119566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 31263a3b9bcSJacob Faibussowitsch PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf); 31356cf3b9cSMatthew G. Knepley if (dim == 1 && Nf < 2) { 3149566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp)); 3153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 316cb1e1211SMatthew G Knepley } 3179566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 3189566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 3199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 320db14aad5SMatthew G. Knepley PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs)); 321b247467aSMatthew G. Knepley m = (dim * (dim + 1)) / 2; 3229566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 3239566063dSJacob Faibussowitsch PetscCall(VecSetType(mode[0], dm->vectype)); 3249566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 3259566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 3269566063dSJacob Faibussowitsch PetscCall(VecGetSize(mode[0], &n)); 327b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 32856cf3b9cSMatthew G. Knepley func[field] = DMPlexProjectRigidBody_Private; 3299566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 330026175e5SToby Isaac for (d = 0; d < m; d++) { 331330485fdSToby Isaac PetscInt ctx[2]; 332cb1e1211SMatthew G Knepley 333db14aad5SMatthew G. Knepley ctxs[field] = (void *)(&ctx[0]); 3349d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 335330485fdSToby Isaac ctx[1] = d; 336db14aad5SMatthew G. Knepley PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d])); 337cb1e1211SMatthew G Knepley } 3383b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 339b50a2c0aSJacob Faibussowitsch for (i = 0; i < mmin; ++i) { 340b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 341b50a2c0aSJacob Faibussowitsch 3429566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 3439566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1)); 344b50a2c0aSJacob Faibussowitsch for (j = i + 1; j < mmin; ++j) { 345b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 3469566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 347b50a2c0aSJacob Faibussowitsch } 348cb1e1211SMatthew G Knepley } 3499566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp)); 3509566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 351db14aad5SMatthew G. Knepley PetscCall(PetscFree2(func, ctxs)); 3523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 353cb1e1211SMatthew G Knepley } 354cb1e1211SMatthew G Knepley 355cc4e42d9SMartin Diehl /*@ 35612adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 35712adca46SMatthew G. Knepley 35820f4b53cSBarry Smith Collective 35912adca46SMatthew G. Knepley 3604165533cSJose E. Roman Input Parameters: 361a1cb98faSBarry Smith + dm - the `DM` 36212adca46SMatthew G. Knepley . nb - The number of bodies 363a1cb98faSBarry Smith . label - The `DMLabel` marking each domain 36412adca46SMatthew G. Knepley . nids - The number of ids per body 36512adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 36612adca46SMatthew G. Knepley 3674165533cSJose E. Roman Output Parameter: 36812adca46SMatthew G. Knepley . sp - the null space 36912adca46SMatthew G. Knepley 37012adca46SMatthew G. Knepley Level: advanced 37112adca46SMatthew G. Knepley 372a1cb98faSBarry Smith Note: 373a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 374a1cb98faSBarry Smith 3751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()` 37612adca46SMatthew G. Knepley @*/ 377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 378d71ae5a4SJacob Faibussowitsch { 37912adca46SMatthew G. Knepley MPI_Comm comm; 38012adca46SMatthew G. Knepley PetscSection section, globalSection; 38112adca46SMatthew G. Knepley Vec *mode; 38212adca46SMatthew G. Knepley PetscScalar *dots; 38312adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 38412adca46SMatthew G. Knepley 38512adca46SMatthew G. Knepley PetscFunctionBegin; 3869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3889566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 3899566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 3909566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 3919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 39212adca46SMatthew G. Knepley m = nb * (dim * (dim + 1)) / 2; 3939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &mode, m, &dots)); 3949566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 3959566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 3969566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 3979566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 39812adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 39912adca46SMatthew G. Knepley for (d = 0; d < m / nb; ++d) { 40012adca46SMatthew G. Knepley PetscInt ctx[2]; 40112adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 40212adca46SMatthew G. Knepley void *voidctx = (void *)(&ctx[0]); 40312adca46SMatthew G. Knepley 40412adca46SMatthew G. Knepley ctx[0] = dimEmbed; 40512adca46SMatthew G. Knepley ctx[1] = d; 4069566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d])); 40712adca46SMatthew G. Knepley off += nids[b]; 40812adca46SMatthew G. Knepley } 40912adca46SMatthew G. Knepley } 4103b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 411606c1a1cSJacob Faibussowitsch for (i = 0; i < m; ++i) { 412b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 4135a0e29b9SJacob Faibussowitsch 4149566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 4159566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1)); 4165a0e29b9SJacob Faibussowitsch for (j = i + 1; j < m; ++j) { 417b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 4189566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 4195a0e29b9SJacob Faibussowitsch } 42012adca46SMatthew G. Knepley } 4219566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp)); 4229566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 4239566063dSJacob Faibussowitsch PetscCall(PetscFree2(mode, dots)); 4243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42512adca46SMatthew G. Knepley } 42612adca46SMatthew G. Knepley 427b29cfa1cSToby Isaac /*@ 428b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 429b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 430a4e35b19SJacob Faibussowitsch evaluating the dual space basis of that point. 431b29cfa1cSToby Isaac 432b29cfa1cSToby Isaac Input Parameters: 433a1cb98faSBarry Smith + dm - the `DMPLEX` object 434b29cfa1cSToby Isaac - height - the maximum projection height >= 0 435b29cfa1cSToby Isaac 436b29cfa1cSToby Isaac Level: advanced 437b29cfa1cSToby Isaac 438a4e35b19SJacob Faibussowitsch Notes: 439a4e35b19SJacob Faibussowitsch A basis function is associated with the point in its transitively-closed support whose mesh 440a4e35b19SJacob Faibussowitsch height is highest (w.r.t. DAG height), but not greater than the maximum projection height, 441a4e35b19SJacob Faibussowitsch which is set with this function. By default, the maximum projection height is zero, which 442a4e35b19SJacob Faibussowitsch means that only mesh cells are used to project basis functions. A height of one, for 443a4e35b19SJacob Faibussowitsch example, evaluates a cell-interior basis functions using its cells dual space basis, but all 444a4e35b19SJacob Faibussowitsch other basis functions with the dual space basis of a face. 445a4e35b19SJacob Faibussowitsch 4461cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 447b29cfa1cSToby Isaac @*/ 448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 449d71ae5a4SJacob Faibussowitsch { 450b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 451b29cfa1cSToby Isaac 452b29cfa1cSToby Isaac PetscFunctionBegin; 453b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 454b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 4553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 456b29cfa1cSToby Isaac } 457b29cfa1cSToby Isaac 458b29cfa1cSToby Isaac /*@ 459b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 460b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 461b29cfa1cSToby Isaac 4622fe279fdSBarry Smith Input Parameter: 463a1cb98faSBarry Smith . dm - the `DMPLEX` object 464b29cfa1cSToby Isaac 4652fe279fdSBarry Smith Output Parameter: 466b29cfa1cSToby Isaac . height - the maximum projection height 467b29cfa1cSToby Isaac 468b29cfa1cSToby Isaac Level: intermediate 469b29cfa1cSToby Isaac 4701cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 471b29cfa1cSToby Isaac @*/ 472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 473d71ae5a4SJacob Faibussowitsch { 474b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 475b29cfa1cSToby Isaac 476b29cfa1cSToby Isaac PetscFunctionBegin; 477b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 478b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 4793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 480b29cfa1cSToby Isaac } 481b29cfa1cSToby Isaac 482ca3d3a14SMatthew G. Knepley typedef struct { 483ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 484ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 485ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 486ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 487ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 488ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 489ca3d3a14SMatthew G. Knepley } RotCtx; 490ca3d3a14SMatthew G. Knepley 491ca3d3a14SMatthew G. Knepley /* 492ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 493ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 494ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 495ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 496ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 497ca3d3a14SMatthew G. Knepley */ 498d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 499d71ae5a4SJacob Faibussowitsch { 500ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 501ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 502ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 503ca3d3a14SMatthew G. Knepley 504ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT)); 506ca3d3a14SMatthew G. Knepley switch (dim) { 507ca3d3a14SMatthew G. Knepley case 2: 5089371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 5099371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 5109371c9d4SSatish Balay rc->R[0] = c1; 5119371c9d4SSatish Balay rc->R[1] = s1; 5129371c9d4SSatish Balay rc->R[2] = -s1; 5139371c9d4SSatish Balay rc->R[3] = c1; 5149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 515b458e8f1SJose E. Roman DMPlex_Transpose2D_Internal(rc->RT); 516ca3d3a14SMatthew G. Knepley break; 517ca3d3a14SMatthew G. Knepley case 3: 5189371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 5199371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 5209371c9d4SSatish Balay c2 = PetscCosReal(rc->beta); 5219371c9d4SSatish Balay s2 = PetscSinReal(rc->beta); 5229371c9d4SSatish Balay c3 = PetscCosReal(rc->gamma); 5239371c9d4SSatish Balay s3 = PetscSinReal(rc->gamma); 5249371c9d4SSatish Balay rc->R[0] = c1 * c3 - c2 * s1 * s3; 5259371c9d4SSatish Balay rc->R[1] = c3 * s1 + c1 * c2 * s3; 5269371c9d4SSatish Balay rc->R[2] = s2 * s3; 5279371c9d4SSatish Balay rc->R[3] = -c1 * s3 - c2 * c3 * s1; 5289371c9d4SSatish Balay rc->R[4] = c1 * c2 * c3 - s1 * s3; 5299371c9d4SSatish Balay rc->R[5] = c3 * s2; 5309371c9d4SSatish Balay rc->R[6] = s1 * s2; 5319371c9d4SSatish Balay rc->R[7] = -c1 * s2; 5329371c9d4SSatish Balay rc->R[8] = c2; 5339566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 534b458e8f1SJose E. Roman DMPlex_Transpose3D_Internal(rc->RT); 535ca3d3a14SMatthew G. Knepley break; 536d71ae5a4SJacob Faibussowitsch default: 537d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim); 538ca3d3a14SMatthew G. Knepley } 5393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 540ca3d3a14SMatthew G. Knepley } 541ca3d3a14SMatthew G. Knepley 542d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 543d71ae5a4SJacob Faibussowitsch { 544ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 545ca3d3a14SMatthew G. Knepley 546ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(PetscFree2(rc->R, rc->RT)); 5489566063dSJacob Faibussowitsch PetscCall(PetscFree(rc)); 5493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 550ca3d3a14SMatthew G. Knepley } 551ca3d3a14SMatthew G. Knepley 552d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 553d71ae5a4SJacob Faibussowitsch { 554ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 555ca3d3a14SMatthew G. Knepley 556ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5574f572ea9SToby Isaac PetscAssertPointer(ctx, 5); 5589371c9d4SSatish Balay if (l2g) { 5599371c9d4SSatish Balay *A = rc->R; 5609371c9d4SSatish Balay } else { 5619371c9d4SSatish Balay *A = rc->RT; 5629371c9d4SSatish Balay } 5633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 564ca3d3a14SMatthew G. Knepley } 565ca3d3a14SMatthew G. Knepley 566d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 567d71ae5a4SJacob Faibussowitsch { 568ec277c0fSMatthew G. Knepley PetscFunctionBegin; 569ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 570ab6a9622SMatthew G. Knepley switch (dim) { 5719371c9d4SSatish Balay case 2: { 57227104ee2SJacob Faibussowitsch PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0}; 573ab6a9622SMatthew G. Knepley 5749566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 5759371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 5769371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 5779371c9d4SSatish Balay } break; 5789371c9d4SSatish Balay case 3: { 57927104ee2SJacob Faibussowitsch PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0}; 580ab6a9622SMatthew G. Knepley 5819566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 5829371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 5839371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 5849371c9d4SSatish Balay z[2] = PetscRealPart(zt[2]); 5859371c9d4SSatish Balay } break; 586ab6a9622SMatthew G. Knepley } 587ab6a9622SMatthew G. Knepley #else 5889566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx)); 589ab6a9622SMatthew G. Knepley #endif 5903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 591ab6a9622SMatthew G. Knepley } 592ab6a9622SMatthew G. Knepley 593d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 594d71ae5a4SJacob Faibussowitsch { 595ca3d3a14SMatthew G. Knepley const PetscScalar *A; 596ca3d3a14SMatthew G. Knepley 597ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5989566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx)); 599ca3d3a14SMatthew G. Knepley switch (dim) { 600d71ae5a4SJacob Faibussowitsch case 2: 601d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(A, 1, y, z); 602d71ae5a4SJacob Faibussowitsch break; 603d71ae5a4SJacob Faibussowitsch case 3: 604d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(A, 1, y, z); 605d71ae5a4SJacob Faibussowitsch break; 606ca3d3a14SMatthew G. Knepley } 6073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 608ca3d3a14SMatthew G. Knepley } 609ca3d3a14SMatthew G. Knepley 610d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 611d71ae5a4SJacob Faibussowitsch { 612ca3d3a14SMatthew G. Knepley PetscSection ts; 613ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 614ca3d3a14SMatthew G. Knepley PetscInt dof; 615ca3d3a14SMatthew G. Knepley 616ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 6179566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 6199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 6209566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva)); 621ca3d3a14SMatthew G. Knepley if (l2g) { 622ca3d3a14SMatthew G. Knepley switch (dof) { 623d71ae5a4SJacob Faibussowitsch case 4: 624d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(tva, 1, a, a); 625d71ae5a4SJacob Faibussowitsch break; 626d71ae5a4SJacob Faibussowitsch case 9: 627d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(tva, 1, a, a); 628d71ae5a4SJacob Faibussowitsch break; 629ca3d3a14SMatthew G. Knepley } 630ca3d3a14SMatthew G. Knepley } else { 631ca3d3a14SMatthew G. Knepley switch (dof) { 632d71ae5a4SJacob Faibussowitsch case 4: 633d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose2D_Internal(tva, 1, a, a); 634d71ae5a4SJacob Faibussowitsch break; 635d71ae5a4SJacob Faibussowitsch case 9: 636d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose3D_Internal(tva, 1, a, a); 637d71ae5a4SJacob Faibussowitsch break; 638ca3d3a14SMatthew G. Knepley } 639ca3d3a14SMatthew G. Knepley } 6409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 6413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 642ca3d3a14SMatthew G. Knepley } 643ca3d3a14SMatthew G. Knepley 644d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 645d71ae5a4SJacob Faibussowitsch { 646ca3d3a14SMatthew G. Knepley PetscSection s, ts; 647ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 648ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 649ca3d3a14SMatthew G. Knepley 650ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 6519566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6529566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof)); 6549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof)); 6559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof)); 6569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof)); 6579566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 6589566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf)); 6599566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag)); 660ca3d3a14SMatthew G. Knepley if (l2g) { 661ca3d3a14SMatthew G. Knepley switch (fdof) { 662d71ae5a4SJacob Faibussowitsch case 4: 663d71ae5a4SJacob Faibussowitsch DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a); 664d71ae5a4SJacob Faibussowitsch break; 665d71ae5a4SJacob Faibussowitsch case 9: 666d71ae5a4SJacob Faibussowitsch DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a); 667d71ae5a4SJacob Faibussowitsch break; 668ca3d3a14SMatthew G. Knepley } 669ca3d3a14SMatthew G. Knepley switch (gdof) { 670d71ae5a4SJacob Faibussowitsch case 4: 671d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a); 672d71ae5a4SJacob Faibussowitsch break; 673d71ae5a4SJacob Faibussowitsch case 9: 674d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a); 675d71ae5a4SJacob Faibussowitsch break; 676ca3d3a14SMatthew G. Knepley } 677ca3d3a14SMatthew G. Knepley } else { 678ca3d3a14SMatthew G. Knepley switch (fdof) { 679d71ae5a4SJacob Faibussowitsch case 4: 680d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a); 681d71ae5a4SJacob Faibussowitsch break; 682d71ae5a4SJacob Faibussowitsch case 9: 683d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a); 684d71ae5a4SJacob Faibussowitsch break; 685ca3d3a14SMatthew G. Knepley } 686ca3d3a14SMatthew G. Knepley switch (gdof) { 687d71ae5a4SJacob Faibussowitsch case 4: 688d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a); 689d71ae5a4SJacob Faibussowitsch break; 690d71ae5a4SJacob Faibussowitsch case 9: 691d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a); 692d71ae5a4SJacob Faibussowitsch break; 693ca3d3a14SMatthew G. Knepley } 694ca3d3a14SMatthew G. Knepley } 6959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 6963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 697ca3d3a14SMatthew G. Knepley } 698ca3d3a14SMatthew G. Knepley 699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 700d71ae5a4SJacob Faibussowitsch { 701ca3d3a14SMatthew G. Knepley PetscSection s; 702ca3d3a14SMatthew G. Knepley PetscSection clSection; 703ca3d3a14SMatthew G. Knepley IS clPoints; 704ca3d3a14SMatthew G. Knepley const PetscInt *clp; 705ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 706ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 707ca3d3a14SMatthew G. Knepley 708ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 7099566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 7109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 71107218a29SMatthew G. Knepley PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp)); 712ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 713ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np * 2; cp += 2) { 7149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof)); 715ca3d3a14SMatthew G. Knepley if (!dof) continue; 7169566063dSJacob Faibussowitsch if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d])); 717ca3d3a14SMatthew G. Knepley d += dof; 718ca3d3a14SMatthew G. Knepley } 719ca3d3a14SMatthew G. Knepley } 7209566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 7213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 722ca3d3a14SMatthew G. Knepley } 723ca3d3a14SMatthew G. Knepley 724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 725d71ae5a4SJacob Faibussowitsch { 726ca3d3a14SMatthew G. Knepley PetscSection s; 727ca3d3a14SMatthew G. Knepley PetscSection clSection; 728ca3d3a14SMatthew G. Knepley IS clPoints; 729ca3d3a14SMatthew G. Knepley const PetscInt *clp; 730ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 7318bdb3c71SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0; 732ca3d3a14SMatthew G. Knepley 733ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 7349566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 7359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 73607218a29SMatthew G. Knepley PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp)); 737ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 738ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np * 2; cpf += 2) { 7399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof)); 740ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 741ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np * 2; cpg += 2) { 7429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof)); 7439566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c])); 744ca3d3a14SMatthew G. Knepley c += gdof; 745ca3d3a14SMatthew G. Knepley } 746ca3d3a14SMatthew G. Knepley } 74763a3b9bcSJacob Faibussowitsch PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 748ca3d3a14SMatthew G. Knepley r += fdof; 749ca3d3a14SMatthew G. Knepley } 750ca3d3a14SMatthew G. Knepley } 75163a3b9bcSJacob Faibussowitsch PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 7529566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 7533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 754ca3d3a14SMatthew G. Knepley } 755ca3d3a14SMatthew G. Knepley 756d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 757d71ae5a4SJacob Faibussowitsch { 758ca3d3a14SMatthew G. Knepley DM tdm; 759ca3d3a14SMatthew G. Knepley Vec tv; 760ca3d3a14SMatthew G. Knepley PetscSection ts, s; 761ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 762ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 763ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 764ca3d3a14SMatthew G. Knepley 765ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 7669566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 7679566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 7689566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 7699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 7709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 7719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 7729566063dSJacob Faibussowitsch PetscCall(VecGetArray(lv, &a)); 7739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 774ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 775ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 7769566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va)); 7779566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va)); 778ca3d3a14SMatthew G. Knepley } 779ca3d3a14SMatthew G. Knepley } 7809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lv, &a)); 7819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 7823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 783ca3d3a14SMatthew G. Knepley } 784ca3d3a14SMatthew G. Knepley 785ca3d3a14SMatthew G. Knepley /*@ 786ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 787ca3d3a14SMatthew G. Knepley 788ca3d3a14SMatthew G. Knepley Input Parameters: 789a1cb98faSBarry Smith + dm - The `DM` 790ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 791ca3d3a14SMatthew G. Knepley 7922fe279fdSBarry Smith Output Parameter: 793ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 794ca3d3a14SMatthew G. Knepley 795ca3d3a14SMatthew G. Knepley Level: developer 796ca3d3a14SMatthew G. Knepley 797a1cb98faSBarry Smith Note: 798a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 799a1cb98faSBarry Smith 8001cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 801ca3d3a14SMatthew G. Knepley @*/ 802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 803d71ae5a4SJacob Faibussowitsch { 804ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 805ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 806ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 8079566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE)); 8083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 809ca3d3a14SMatthew G. Knepley } 810ca3d3a14SMatthew G. Knepley 811ca3d3a14SMatthew G. Knepley /*@ 812ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 813ca3d3a14SMatthew G. Knepley 814ca3d3a14SMatthew G. Knepley Input Parameters: 815a1cb98faSBarry Smith + dm - The `DM` 816ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 817ca3d3a14SMatthew G. Knepley 8182fe279fdSBarry Smith Output Parameter: 819ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 820ca3d3a14SMatthew G. Knepley 821ca3d3a14SMatthew G. Knepley Level: developer 822ca3d3a14SMatthew G. Knepley 823a1cb98faSBarry Smith Note: 824a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 825a1cb98faSBarry Smith 8261cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 827ca3d3a14SMatthew G. Knepley @*/ 828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 829d71ae5a4SJacob Faibussowitsch { 830ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 831ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 832ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 8339566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE)); 8343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 835ca3d3a14SMatthew G. Knepley } 836ca3d3a14SMatthew G. Knepley 837ca3d3a14SMatthew G. Knepley /*@ 838ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 839ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 840ca3d3a14SMatthew G. Knepley 841ca3d3a14SMatthew G. Knepley Input Parameters: 842a1cb98faSBarry Smith + dm - The `DM` 843ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 844ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 845f0fc11ceSJed Brown - gamma - The third Euler angle 846ca3d3a14SMatthew G. Knepley 847ca3d3a14SMatthew G. Knepley Level: developer 848ca3d3a14SMatthew G. Knepley 849a1cb98faSBarry Smith Note: 850a1cb98faSBarry Smith Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 851a1cb98faSBarry Smith we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows 852a1cb98faSBarry Smith .vb 853a1cb98faSBarry Smith The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 854a1cb98faSBarry Smith The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 855a1cb98faSBarry Smith The XYZ system rotates a third time about the z axis by gamma. 856a1cb98faSBarry Smith .ve 857a1cb98faSBarry Smith 8581cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()` 859ca3d3a14SMatthew G. Knepley @*/ 860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 861d71ae5a4SJacob Faibussowitsch { 862ca3d3a14SMatthew G. Knepley RotCtx *rc; 863ca3d3a14SMatthew G. Knepley PetscInt cdim; 864ca3d3a14SMatthew G. Knepley 865362febeeSStefano Zampini PetscFunctionBegin; 8669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 8679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &rc)); 868ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 869ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 870ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 871ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 872ca3d3a14SMatthew G. Knepley rc->dim = cdim; 873ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 874ca3d3a14SMatthew G. Knepley rc->beta = beta; 875ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 8769566063dSJacob Faibussowitsch PetscCall((*dm->transformSetUp)(dm, dm->transformCtx)); 8779566063dSJacob Faibussowitsch PetscCall(DMConstructBasisTransform_Internal(dm)); 8783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 879ca3d3a14SMatthew G. Knepley } 880ca3d3a14SMatthew G. Knepley 881b278463cSMatthew G. Knepley /*@C 882ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates 883b278463cSMatthew G. Knepley 884b278463cSMatthew G. Knepley Input Parameters: 885a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 886b278463cSMatthew G. Knepley . time - The time 887b278463cSMatthew G. Knepley . field - The field to constrain 8881c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 88920f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 890a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 891a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 892b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 893b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 894b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 895b278463cSMatthew G. Knepley 896b278463cSMatthew G. Knepley Output Parameter: 897b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 898b278463cSMatthew G. Knepley 899b278463cSMatthew G. Knepley Level: developer 900b278463cSMatthew G. Knepley 9011cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 902b278463cSMatthew G. Knepley @*/ 903d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 904d71ae5a4SJacob Faibussowitsch { 9050163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 90655f2e967SMatthew G. Knepley void **ctxs; 907d7ddef95SMatthew G. Knepley PetscInt numFields; 908d7ddef95SMatthew G. Knepley 909d7ddef95SMatthew G. Knepley PetscFunctionBegin; 9109566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 9119566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 912d7ddef95SMatthew G. Knepley funcs[field] = func; 913d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 9149566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX)); 9159566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917d7ddef95SMatthew G. Knepley } 918d7ddef95SMatthew G. Knepley 919b278463cSMatthew G. Knepley /*@C 920ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data 921b278463cSMatthew G. Knepley 922b278463cSMatthew G. Knepley Input Parameters: 923a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 924b278463cSMatthew G. Knepley . time - The time 925b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 926b278463cSMatthew G. Knepley . field - The field to constrain 9271c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 92820f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 929a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 930a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 931b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 932b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 933b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 934b278463cSMatthew G. Knepley 935b278463cSMatthew G. Knepley Output Parameter: 936b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 937b278463cSMatthew G. Knepley 938b278463cSMatthew G. Knepley Level: developer 939b278463cSMatthew G. Knepley 9401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 941b278463cSMatthew G. Knepley @*/ 942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 943d71ae5a4SJacob Faibussowitsch { 9449371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 945c60e475cSMatthew G. Knepley void **ctxs; 946c60e475cSMatthew G. Knepley PetscInt numFields; 947c60e475cSMatthew G. Knepley 948c60e475cSMatthew G. Knepley PetscFunctionBegin; 9499566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 9509566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 951c60e475cSMatthew G. Knepley funcs[field] = func; 952c60e475cSMatthew G. Knepley ctxs[field] = ctx; 9539566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 9549566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 9553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 956c60e475cSMatthew G. Knepley } 957c60e475cSMatthew G. Knepley 958b278463cSMatthew G. Knepley /*@C 959d5b43468SJose E. Roman DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data 960ece3a9fcSMatthew G. Knepley 96120f4b53cSBarry Smith Collective 962ece3a9fcSMatthew G. Knepley 963ece3a9fcSMatthew G. Knepley Input Parameters: 964a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 965ece3a9fcSMatthew G. Knepley . time - The time 966ece3a9fcSMatthew G. Knepley . locU - A local vector with the input solution values 967ece3a9fcSMatthew G. Knepley . field - The field to constrain 968ece3a9fcSMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 96920f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 970a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 971a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 972ece3a9fcSMatthew G. Knepley . ids - An array of ids for constrained points 97320f4b53cSBarry Smith . func - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()` 97420f4b53cSBarry Smith - ctx - An optional user context for `func` 975ece3a9fcSMatthew G. Knepley 976ece3a9fcSMatthew G. Knepley Output Parameter: 977ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values 978ece3a9fcSMatthew G. Knepley 979ece3a9fcSMatthew G. Knepley Level: developer 980ece3a9fcSMatthew G. Knepley 9811cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 982ece3a9fcSMatthew G. Knepley @*/ 983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 984d71ae5a4SJacob Faibussowitsch { 9859371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 986ece3a9fcSMatthew G. Knepley void **ctxs; 987ece3a9fcSMatthew G. Knepley PetscInt numFields; 988ece3a9fcSMatthew G. Knepley 989ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 9909566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 9919566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 992ece3a9fcSMatthew G. Knepley funcs[field] = func; 993ece3a9fcSMatthew G. Knepley ctxs[field] = ctx; 9949566063dSJacob Faibussowitsch PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 9959566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 9963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 997ece3a9fcSMatthew G. Knepley } 998ece3a9fcSMatthew G. Knepley 999ece3a9fcSMatthew G. Knepley /*@C 1000b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 1001b278463cSMatthew G. Knepley 1002b278463cSMatthew G. Knepley Input Parameters: 1003a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 1004b278463cSMatthew G. Knepley . time - The time 1005b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 1006b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 1007b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 1008b278463cSMatthew G. Knepley . field - The field to constrain 10091c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 101020f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 1011a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 1012a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 1013b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 1014b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 1015b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 1016b278463cSMatthew G. Knepley 1017b278463cSMatthew G. Knepley Output Parameter: 1018b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 1019b278463cSMatthew G. Knepley 1020b278463cSMatthew G. Knepley Level: developer 1021b278463cSMatthew G. Knepley 1022a1cb98faSBarry Smith Note: 1023a1cb98faSBarry Smith This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()` 1024a1cb98faSBarry Smith 10251cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 1026b278463cSMatthew G. Knepley @*/ 1027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX) 1028d71ae5a4SJacob Faibussowitsch { 102961f58d28SMatthew G. Knepley PetscDS prob; 1030da97024aSMatthew G. Knepley PetscSF sf; 1031d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 103220369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 1033da97024aSMatthew G. Knepley const PetscInt *leaves; 1034d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 1035520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 10363ba16761SJacob Faibussowitsch PetscErrorCode ierru = PETSC_SUCCESS; 1037d7ddef95SMatthew G. Knepley 1038d7ddef95SMatthew G. Knepley PetscFunctionBegin; 10399566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 10409566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 1041da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 10429566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 10439566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 10449566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10459566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 10469566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 104720369375SToby Isaac if (cellGeometry) { 10489566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 10499566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 105020369375SToby Isaac } 1051d7ddef95SMatthew G. Knepley if (Grad) { 1052c0a6632aSMatthew G. Knepley PetscFV fv; 1053c0a6632aSMatthew G. Knepley 10549566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv)); 10559566063dSJacob Faibussowitsch PetscCall(VecGetDM(Grad, &dmGrad)); 10569566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Grad, &grad)); 10579566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 10589566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 1059d7ddef95SMatthew G. Knepley } 10609566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX, &x)); 1061d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 1062d7ddef95SMatthew G. Knepley IS faceIS; 1063d7ddef95SMatthew G. Knepley const PetscInt *faces; 1064d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 1065d7ddef95SMatthew G. Knepley 10669566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS)); 1067d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 10689566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 10699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 1070d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 1071d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 1072640bce14SSatish Balay PetscFVFaceGeom *fg; 1073d7ddef95SMatthew G. Knepley 1074d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 10759566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc)); 1076da97024aSMatthew G. Knepley if (loc >= 0) continue; 10779566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 10789566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 1079d7ddef95SMatthew G. Knepley if (Grad) { 1080640bce14SSatish Balay PetscFVCellGeom *cg; 1081640bce14SSatish Balay PetscScalar *cx, *cgrad; 1082d7ddef95SMatthew G. Knepley PetscScalar *xG; 1083d7ddef95SMatthew G. Knepley PetscReal dx[3]; 1084d7ddef95SMatthew G. Knepley PetscInt d; 1085d7ddef95SMatthew G. Knepley 10869566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg)); 10879566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx)); 10889566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad)); 10899566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 1090d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 1091d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx); 10929566063dSJacob Faibussowitsch PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx)); 1093d7ddef95SMatthew G. Knepley } else { 1094640bce14SSatish Balay PetscScalar *xI; 1095d7ddef95SMatthew G. Knepley PetscScalar *xG; 1096d7ddef95SMatthew G. Knepley 10979566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI)); 10989566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 1099e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 1100e735a8a9SMatthew G. Knepley if (ierru) { 11019566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 11029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 1103e735a8a9SMatthew G. Knepley goto cleanup; 1104e735a8a9SMatthew G. Knepley } 1105d7ddef95SMatthew G. Knepley } 1106d7ddef95SMatthew G. Knepley } 11079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 11089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 1109d7ddef95SMatthew G. Knepley } 1110e735a8a9SMatthew G. Knepley cleanup: 11119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX, &x)); 1112d7ddef95SMatthew G. Knepley if (Grad) { 11139566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 11149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Grad, &grad)); 1115d7ddef95SMatthew G. Knepley } 11169566063dSJacob Faibussowitsch if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 11179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 11189566063dSJacob Faibussowitsch PetscCall(ierru); 11193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1120d7ddef95SMatthew G. Knepley } 1121d7ddef95SMatthew G. Knepley 1122d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 1123d71ae5a4SJacob Faibussowitsch { 11240c364540SMatthew G. Knepley PetscInt c; 11250c364540SMatthew G. Knepley for (c = 0; c < Nc; ++c) u[c] = 0.0; 11263ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 11270c364540SMatthew G. Knepley } 11280c364540SMatthew G. Knepley 1129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1130d71ae5a4SJacob Faibussowitsch { 11310c364540SMatthew G. Knepley PetscObject isZero; 1132e5e52638SMatthew G. Knepley PetscDS prob; 1133d7ddef95SMatthew G. Knepley PetscInt numBd, b; 113455f2e967SMatthew G. Knepley 113555f2e967SMatthew G. Knepley PetscFunctionBegin; 11369566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 11379566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 11389566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 1139450c7a9fSMatthew G. Knepley PetscCall(PetscDSUpdateBoundaryLabels(prob, dm)); 114055f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 114145480ffeSMatthew G. Knepley PetscWeakForm wf; 1142f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 114345480ffeSMatthew G. Knepley const char *name; 1144d7ddef95SMatthew G. Knepley DMLabel label; 11451c531cf8SMatthew G. Knepley PetscInt field, Nc; 11461c531cf8SMatthew G. Knepley const PetscInt *comps; 1147d7ddef95SMatthew G. Knepley PetscObject obj; 1148d7ddef95SMatthew G. Knepley PetscClassId id; 114945480ffeSMatthew G. Knepley void (*bvfunc)(void); 1150d7ddef95SMatthew G. Knepley PetscInt numids; 1151d7ddef95SMatthew G. Knepley const PetscInt *ids; 115255f2e967SMatthew G. Knepley void *ctx; 115355f2e967SMatthew G. Knepley 11549566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 1155f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 11569566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 11579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1158d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1159c60e475cSMatthew G. Knepley switch (type) { 1160c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 11619371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 11628434afd1SBarry Smith PetscSimplePointFn *func = (PetscSimplePointFn *)bvfunc; 116345480ffeSMatthew G. Knepley 116445480ffeSMatthew G. Knepley if (isZero) func = zero; 11659566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11669566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX)); 11679566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11689371c9d4SSatish Balay } break; 11699371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 117045480ffeSMatthew G. Knepley PetscPointFunc func = (PetscPointFunc)bvfunc; 117145480ffeSMatthew G. Knepley 11729566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11739566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX)); 11749566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11759371c9d4SSatish Balay } break; 1176d71ae5a4SJacob Faibussowitsch default: 1177d71ae5a4SJacob Faibussowitsch break; 1178c60e475cSMatthew G. Knepley } 1179d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 118045480ffeSMatthew G. Knepley { 118145480ffeSMatthew G. Knepley PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc; 118245480ffeSMatthew G. Knepley 118343ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 11849566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX)); 118545480ffeSMatthew G. Knepley } 118663a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 118755f2e967SMatthew G. Knepley } 11883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 118955f2e967SMatthew G. Knepley } 119055f2e967SMatthew G. Knepley 1191d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1192d71ae5a4SJacob Faibussowitsch { 119356cf3b9cSMatthew G. Knepley PetscObject isZero; 119456cf3b9cSMatthew G. Knepley PetscDS prob; 119556cf3b9cSMatthew G. Knepley PetscInt numBd, b; 119656cf3b9cSMatthew G. Knepley 119756cf3b9cSMatthew G. Knepley PetscFunctionBegin; 11983ba16761SJacob Faibussowitsch if (!locX) PetscFunctionReturn(PETSC_SUCCESS); 11999566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 12009566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 12019566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 120256cf3b9cSMatthew G. Knepley for (b = 0; b < numBd; ++b) { 120345480ffeSMatthew G. Knepley PetscWeakForm wf; 120456cf3b9cSMatthew G. Knepley DMBoundaryConditionType type; 120545480ffeSMatthew G. Knepley const char *name; 120656cf3b9cSMatthew G. Knepley DMLabel label; 120756cf3b9cSMatthew G. Knepley PetscInt field, Nc; 120856cf3b9cSMatthew G. Knepley const PetscInt *comps; 120956cf3b9cSMatthew G. Knepley PetscObject obj; 121056cf3b9cSMatthew G. Knepley PetscClassId id; 121156cf3b9cSMatthew G. Knepley PetscInt numids; 121256cf3b9cSMatthew G. Knepley const PetscInt *ids; 121345480ffeSMatthew G. Knepley void (*bvfunc)(void); 121456cf3b9cSMatthew G. Knepley void *ctx; 121556cf3b9cSMatthew G. Knepley 12169566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx)); 121756cf3b9cSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 12189566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 122056cf3b9cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 122156cf3b9cSMatthew G. Knepley switch (type) { 122256cf3b9cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 12239371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 12248434afd1SBarry Smith PetscSimplePointFn *func_t = (PetscSimplePointFn *)bvfunc; 122545480ffeSMatthew G. Knepley 122645480ffeSMatthew G. Knepley if (isZero) func_t = zero; 12279566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 12289566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 12299566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 12309371c9d4SSatish Balay } break; 12319371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 123245480ffeSMatthew G. Knepley PetscPointFunc func_t = (PetscPointFunc)bvfunc; 123345480ffeSMatthew G. Knepley 12349566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 12359566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 12369566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 12379371c9d4SSatish Balay } break; 1238d71ae5a4SJacob Faibussowitsch default: 1239d71ae5a4SJacob Faibussowitsch break; 124056cf3b9cSMatthew G. Knepley } 124163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 124256cf3b9cSMatthew G. Knepley } 12433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 124456cf3b9cSMatthew G. Knepley } 124556cf3b9cSMatthew G. Knepley 1246f1d73a7aSMatthew G. Knepley /*@ 1247f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 1248f1d73a7aSMatthew G. Knepley 1249ed808b8fSJed Brown Not Collective 1250ed808b8fSJed Brown 1251f1d73a7aSMatthew G. Knepley Input Parameters: 1252a1cb98faSBarry Smith + dm - The `DM` 1253f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 1254f1d73a7aSMatthew G. Knepley . time - The time 1255f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 1256f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 1257f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 1258f1d73a7aSMatthew G. Knepley 12592fe279fdSBarry Smith Output Parameter: 1260f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 1261f1d73a7aSMatthew G. Knepley 1262ed808b8fSJed Brown Level: intermediate 1263f1d73a7aSMatthew G. Knepley 12641cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()` 1265f1d73a7aSMatthew G. Knepley @*/ 1266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1267d71ae5a4SJacob Faibussowitsch { 1268f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1269f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1270064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 1271ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1272ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1273ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 1274cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM)); 12753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1276f1d73a7aSMatthew G. Knepley } 1277f1d73a7aSMatthew G. Knepley 127856cf3b9cSMatthew G. Knepley /*@ 1279a5b23f4aSJose E. Roman DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector 128056cf3b9cSMatthew G. Knepley 128156cf3b9cSMatthew G. Knepley Input Parameters: 1282a1cb98faSBarry Smith + dm - The `DM` 128356cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 128456cf3b9cSMatthew G. Knepley . time - The time 128556cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 128656cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 128756cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 128856cf3b9cSMatthew G. Knepley 12892fe279fdSBarry Smith Output Parameter: 129056cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values 129156cf3b9cSMatthew G. Knepley 129256cf3b9cSMatthew G. Knepley Level: developer 129356cf3b9cSMatthew G. Knepley 12941cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()` 129556cf3b9cSMatthew G. Knepley @*/ 1296d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1297d71ae5a4SJacob Faibussowitsch { 129856cf3b9cSMatthew G. Knepley PetscFunctionBegin; 129956cf3b9cSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1300ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3); 1301ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1302ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1303ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 13046c51210dSStefano Zampini PetscTryMethod(dm, "DMPlexInsertTimeDerivativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM)); 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130656cf3b9cSMatthew G. Knepley } 130756cf3b9cSMatthew G. Knepley 13085962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values 13095962854dSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesFVM(DM dm, PetscFV fv, Vec locX, PetscReal time, Vec *locGradient) 13105962854dSMatthew G. Knepley { 13115962854dSMatthew G. Knepley DM dmGrad; 13125962854dSMatthew G. Knepley Vec cellGeometryFVM, faceGeometryFVM, locGrad = NULL; 13135962854dSMatthew G. Knepley 13145962854dSMatthew G. Knepley PetscFunctionBegin; 13155962854dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13165962854dSMatthew G. Knepley PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2); 13175962854dSMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 13185962854dSMatthew G. Knepley if (locGradient) { 13195962854dSMatthew G. Knepley PetscAssertPointer(locGradient, 5); 13205962854dSMatthew G. Knepley *locGradient = NULL; 13215962854dSMatthew G. Knepley } 13225962854dSMatthew G. Knepley PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 13235962854dSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 13245962854dSMatthew G. Knepley PetscCall(DMPlexGetGradientDM(dm, fv, &dmGrad)); 13255962854dSMatthew G. Knepley if (dmGrad) { 13265962854dSMatthew G. Knepley Vec grad; 13275962854dSMatthew G. Knepley PetscInt fStart, fEnd; 13285962854dSMatthew G. Knepley 13295962854dSMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 13305962854dSMatthew G. Knepley PetscCall(DMGetGlobalVector(dmGrad, &grad)); 13315962854dSMatthew G. Knepley PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 13325962854dSMatthew G. Knepley /* Communicate gradient values */ 13335962854dSMatthew G. Knepley PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 13345962854dSMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 13355962854dSMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 13365962854dSMatthew G. Knepley PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 13375962854dSMatthew G. Knepley } 13385962854dSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad)); 13395962854dSMatthew G. Knepley if (locGradient) *locGradient = locGrad; 13405962854dSMatthew G. Knepley else if (locGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 13415962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 13425962854dSMatthew G. Knepley } 13435962854dSMatthew G. Knepley 1344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1345d71ae5a4SJacob Faibussowitsch { 1346574a98acSMatthew G. Knepley Vec localX; 1347574a98acSMatthew G. Knepley 1348574a98acSMatthew G. Knepley PetscFunctionBegin; 13499566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 13509566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL)); 13519566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 13529566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 13539566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff)); 13549566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 13553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1356574a98acSMatthew G. Knepley } 1357574a98acSMatthew G. Knepley 1358574a98acSMatthew G. Knepley /*@C 135960225df5SJacob Faibussowitsch DMPlexComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1360574a98acSMatthew G. Knepley 136120f4b53cSBarry Smith Collective 1362c0f8e1fdSMatthew G. Knepley 1363574a98acSMatthew G. Knepley Input Parameters: 1364a1cb98faSBarry Smith + dm - The `DM` 1365574a98acSMatthew G. Knepley . time - The time 1366574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 136720f4b53cSBarry Smith . ctxs - Optional array of contexts to pass to each function, or `NULL`. 1368574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1369574a98acSMatthew G. Knepley 1370574a98acSMatthew G. Knepley Output Parameter: 1371574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1372574a98acSMatthew G. Knepley 1373574a98acSMatthew G. Knepley Level: developer 1374574a98acSMatthew G. Knepley 13751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1376574a98acSMatthew G. Knepley @*/ 1377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1378d71ae5a4SJacob Faibussowitsch { 13790f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1380ca3d3a14SMatthew G. Knepley DM tdm; 1381ca3d3a14SMatthew G. Knepley Vec tv; 1382cb1e1211SMatthew G Knepley PetscSection section; 1383c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 13844bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 138515496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 13864bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 1387cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 13887318780aSToby Isaac const PetscReal *quadWeights; 1389412e9a14SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset; 1390ca3d3a14SMatthew G. Knepley PetscBool transform; 1391cb1e1211SMatthew G Knepley 1392cb1e1211SMatthew G Knepley PetscFunctionBegin; 13939566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 13949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 13952a4e142eSMatthew G. Knepley fegeom.dimEmbed = coordDim; 13969566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 13979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 13989566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 13999566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 14009566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1401eae3dc7dSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 1402cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 140315496722SMatthew G. Knepley PetscObject obj; 140415496722SMatthew G. Knepley PetscClassId id; 1405c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1406c5bbbd5bSMatthew G. Knepley 14079566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 14089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 140915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 141015496722SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 141115496722SMatthew G. Knepley 14129566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 14139566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 141415496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 141515496722SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 141615496722SMatthew G. Knepley 14179566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 14189566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 141963a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1420c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1421cb1e1211SMatthew G Knepley } 14229566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 142363a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 1424c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 14259566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 14269566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 1427cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1428a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1429cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 14309c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1431cb1e1211SMatthew G Knepley 14329566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 1433e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x)); 1434cb1e1211SMatthew G Knepley 143515496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 143615496722SMatthew G. Knepley PetscObject obj; 143715496722SMatthew G. Knepley PetscClassId id; 1438c110b1eeSGeoffrey Irving void *const ctx = ctxs ? ctxs[field] : NULL; 143915496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1440cb1e1211SMatthew G Knepley 14419566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 14429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 14439371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 14449371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 14459371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 14469371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 14479371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 14489371c9d4SSatish Balay Nb = 1; 14499371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1450cb1e1211SMatthew G Knepley if (debug) { 1451cb1e1211SMatthew G Knepley char title[1024]; 145263a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 14539566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1454cb1e1211SMatthew G Knepley } 14557318780aSToby Isaac for (q = 0; q < Nq; ++q) { 14562a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1457d0609cedSBarry Smith PetscErrorCode ierr; 14582a4e142eSMatthew G. Knepley 14592a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 14602a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 14612a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 14622a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 146363a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1464d3a7d86cSMatthew G. Knepley if (transform) { 1465d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 14669566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1467d3a7d86cSMatthew G. Knepley } else { 1468d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1469d3a7d86cSMatthew G. Knepley } 14709566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 1471ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1472e735a8a9SMatthew G. Knepley if (ierr) { 14739566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 14749566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14759566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1476e735a8a9SMatthew G. Knepley } 14779566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 14789566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 14799566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 14802df84da0SMatthew G. Knepley else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 148115496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1482beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 14839371c9d4SSatish Balay if (debug) 14849371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.), 14859371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc]))); 14864bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1487cb1e1211SMatthew G Knepley } 1488cb1e1211SMatthew G Knepley } 14899c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1490beaa55a6SMatthew G. Knepley qc += Nc; 1491cb1e1211SMatthew G Knepley } 14929566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 14939566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 1494cb1e1211SMatthew G Knepley localDiff += elemDiff; 1495cb1e1211SMatthew G Knepley } 14969566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 14971c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 1498cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 14993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1500cb1e1211SMatthew G Knepley } 1501cb1e1211SMatthew G Knepley 1502d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1503d71ae5a4SJacob Faibussowitsch { 15040f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1505ca3d3a14SMatthew G. Knepley DM tdm; 1506cb1e1211SMatthew G Knepley PetscSection section; 150740e14135SMatthew G. Knepley PetscQuadrature quad; 1508ca3d3a14SMatthew G. Knepley Vec localX, tv; 15099c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 15102a4e142eSMatthew G. Knepley const PetscReal *quadWeights; 15114bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 15124bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 151340e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 1514485ad865SMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset; 1515ca3d3a14SMatthew G. Knepley PetscBool transform; 1516cb1e1211SMatthew G Knepley 1517cb1e1211SMatthew G Knepley PetscFunctionBegin; 15189566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 15199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 15204bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 15219566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 15239566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 15249566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 15259566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 15269566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 15279566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 15289566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1529652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 15300f2d7e86SMatthew G. Knepley PetscFE fe; 153140e14135SMatthew G. Knepley PetscInt Nc; 1532652b88e8SMatthew G. Knepley 15339566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 15349566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 15359566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 153640e14135SMatthew G. Knepley numComponents += Nc; 1537652b88e8SMatthew G. Knepley } 15389566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 153963a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 15409566063dSJacob Faibussowitsch /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */ 1541c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ)); 15429566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 154340e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 154440e14135SMatthew G. Knepley PetscScalar *x = NULL; 154540e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 15469c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1547652b88e8SMatthew G. Knepley 15489566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 1549e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x)); 155040e14135SMatthew G. Knepley 15519c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 15520f2d7e86SMatthew G. Knepley PetscFE fe; 155351259fa3SMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 15549c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 155540e14135SMatthew G. Knepley 15569566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 15579566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 15589566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 155940e14135SMatthew G. Knepley if (debug) { 156040e14135SMatthew G. Knepley char title[1024]; 15619566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 15629566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1563652b88e8SMatthew G. Knepley } 15649c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 15652a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1566d0609cedSBarry Smith PetscErrorCode ierr; 15672a4e142eSMatthew G. Knepley 15682a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 15692a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 15702a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 15712a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 15722df84da0SMatthew G. Knepley PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1573d3a7d86cSMatthew G. Knepley if (transform) { 1574d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 15759566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1576d3a7d86cSMatthew G. Knepley } else { 1577d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1578d3a7d86cSMatthew G. Knepley } 15799566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 15804bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx); 1581e735a8a9SMatthew G. Knepley if (ierr) { 15829566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 15839566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 15849566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 1585e735a8a9SMatthew G. Knepley } 15869566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 15879566063dSJacob Faibussowitsch PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant)); 15884bee2e38SMatthew G. Knepley /* Overwrite with the dot product if the normal is given */ 15894bee2e38SMatthew G. Knepley if (n) { 15904bee2e38SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 15914bee2e38SMatthew G. Knepley PetscScalar sum = 0.0; 15924bee2e38SMatthew G. Knepley PetscInt d; 15934bee2e38SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d]; 15944bee2e38SMatthew G. Knepley interpolant[fc] = sum; 15954bee2e38SMatthew G. Knepley } 15964bee2e38SMatthew G. Knepley } 15979c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1598beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 159963a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 16004bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 160140e14135SMatthew G. Knepley } 160240e14135SMatthew G. Knepley } 16039c3cf19fSMatthew G. Knepley fieldOffset += Nb; 16049c3cf19fSMatthew G. Knepley qc += Nc; 160540e14135SMatthew G. Knepley } 16069566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 160763a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 160840e14135SMatthew G. Knepley localDiff += elemDiff; 160940e14135SMatthew G. Knepley } 16109566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 16119566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 16121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 161340e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 16143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1615cb1e1211SMatthew G Knepley } 1616cb1e1211SMatthew G Knepley 1617d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1618d71ae5a4SJacob Faibussowitsch { 16190f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1620ca3d3a14SMatthew G. Knepley DM tdm; 1621083401c6SMatthew G. Knepley DMLabel depthLabel; 162273d901b8SMatthew G. Knepley PetscSection section; 1623ca3d3a14SMatthew G. Knepley Vec localX, tv; 162473d901b8SMatthew G. Knepley PetscReal *localDiff; 1625083401c6SMatthew G. Knepley PetscInt dim, depth, dE, Nf, f, Nds, s; 1626ca3d3a14SMatthew G. Knepley PetscBool transform; 162773d901b8SMatthew G. Knepley 162873d901b8SMatthew G. Knepley PetscFunctionBegin; 16299566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16309566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 16319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 16329566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 16339566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 16349566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 16359566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 16369566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 16379566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 16389566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(depthLabel, &depth)); 1639083401c6SMatthew G. Knepley 16409566063dSJacob Faibussowitsch PetscCall(VecSet(localX, 0.0)); 16419566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 16429566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 16439566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 16449566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 16459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nf, &localDiff)); 1646083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1647083401c6SMatthew G. Knepley PetscDS ds; 1648083401c6SMatthew G. Knepley DMLabel label; 1649083401c6SMatthew G. Knepley IS fieldIS, pointIS; 1650083401c6SMatthew G. Knepley const PetscInt *fields, *points = NULL; 1651083401c6SMatthew G. Knepley PetscQuadrature quad; 1652083401c6SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1653083401c6SMatthew G. Knepley PetscFEGeom fegeom; 1654083401c6SMatthew G. Knepley PetscReal *coords, *gcoords; 1655083401c6SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 16565fedec97SMatthew G. Knepley PetscBool isCohesive; 1657083401c6SMatthew G. Knepley PetscInt qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf; 165873d901b8SMatthew G. Knepley 165907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 16609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 16619566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 16629566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 16639566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(ds, &totNc)); 16649566063dSJacob Faibussowitsch PetscCall(PetscDSGetQuadrature(ds, &quad)); 16659566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 166663a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc); 16679566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ)); 1668083401c6SMatthew G. Knepley if (!label) { 16699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1670083401c6SMatthew G. Knepley } else { 16719566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 16729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &cEnd)); 16739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 1674083401c6SMatthew G. Knepley } 167573d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1676083401c6SMatthew G. Knepley const PetscInt cell = points ? points[c] : c; 167773d901b8SMatthew G. Knepley PetscScalar *x = NULL; 16785fedec97SMatthew G. Knepley const PetscInt *cone; 16795fedec97SMatthew G. Knepley PetscInt qc = 0, fOff = 0, dep; 168073d901b8SMatthew G. Knepley 16819566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, cell, &dep)); 1682083401c6SMatthew G. Knepley if (dep != depth - 1) continue; 16835fedec97SMatthew G. Knepley if (isCohesive) { 16849566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 16859566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 168696959cd1SMatthew G. Knepley } else { 16879566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 168896959cd1SMatthew G. Knepley } 1689e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, cell, 0, NULL, &x)); 16905fedec97SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 169115496722SMatthew G. Knepley PetscObject obj; 169215496722SMatthew G. Knepley PetscClassId id; 1693083401c6SMatthew G. Knepley void *const ctx = ctxs ? ctxs[fields[f]] : NULL; 169415496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 169515496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 16965fedec97SMatthew G. Knepley PetscBool cohesive; 169715496722SMatthew G. Knepley 16989566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 16999566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 17009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 17019371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 17029371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 17039371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 17049371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 17059371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 17069371c9d4SSatish Balay Nb = 1; 17079371c9d4SSatish Balay } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 1708c82db6dbSMatthew G. Knepley if (isCohesive && !cohesive) { 1709c82db6dbSMatthew G. Knepley fOff += Nb * 2; 1710c82db6dbSMatthew G. Knepley qc += Nc; 1711c82db6dbSMatthew G. Knepley continue; 1712c82db6dbSMatthew G. Knepley } 171373d901b8SMatthew G. Knepley if (debug) { 171473d901b8SMatthew G. Knepley char title[1024]; 171563a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f])); 17169566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff])); 171773d901b8SMatthew G. Knepley } 17187318780aSToby Isaac for (q = 0; q < Nq; ++q) { 17192a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1720d0609cedSBarry Smith PetscErrorCode ierr; 17212a4e142eSMatthew G. Knepley 17222a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 1723083401c6SMatthew G. Knepley qgeom.J = &fegeom.J[q * dE * dE]; 1724083401c6SMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * dE * dE]; 17252a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 172663a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 1727d3a7d86cSMatthew G. Knepley if (transform) { 1728083401c6SMatthew G. Knepley gcoords = &coords[dE * Nq]; 17299566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx)); 1730d3a7d86cSMatthew G. Knepley } else { 1731083401c6SMatthew G. Knepley gcoords = &coords[dE * q]; 1732d3a7d86cSMatthew G. Knepley } 17332df84da0SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.; 1734083401c6SMatthew G. Knepley ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx); 1735e735a8a9SMatthew G. Knepley if (ierr) { 17369566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 17379566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 17389566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1739e735a8a9SMatthew G. Knepley } 17409566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 174196959cd1SMatthew G. Knepley /* Call once for each face, except for lagrange field */ 17429566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant)); 17439566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant)); 174463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 174515496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1746beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 17479371c9d4SSatish Balay if (debug) 17489371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.), 17499371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 17504bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 175173d901b8SMatthew G. Knepley } 175273d901b8SMatthew G. Knepley } 1753083401c6SMatthew G. Knepley fOff += Nb; 17549c3cf19fSMatthew G. Knepley qc += Nc; 1755083401c6SMatthew G. Knepley localDiff[fields[f]] += elemDiff; 175663a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]])); 175773d901b8SMatthew G. Knepley } 17589566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 1759083401c6SMatthew G. Knepley } 1760083401c6SMatthew G. Knepley if (label) { 17619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 17629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1763083401c6SMatthew G. Knepley } 17649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 17659566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 176673d901b8SMatthew G. Knepley } 17679566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 17681c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 17699566063dSJacob Faibussowitsch PetscCall(PetscFree(localDiff)); 1770083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]); 17713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 177273d901b8SMatthew G. Knepley } 177373d901b8SMatthew G. Knepley 1774e729f68cSMatthew G. Knepley /*@C 1775e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1776e729f68cSMatthew G. Knepley 177720f4b53cSBarry Smith Collective 1778c0f8e1fdSMatthew G. Knepley 1779e729f68cSMatthew G. Knepley Input Parameters: 1780a1cb98faSBarry Smith + dm - The `DM` 17810163fd50SMatthew G. Knepley . time - The time 178220f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation 178320f4b53cSBarry Smith . ctxs - Optional array of contexts to pass to each function, or `NULL`. 1784e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1785e729f68cSMatthew G. Knepley 1786e729f68cSMatthew G. Knepley Output Parameter: 178720f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell 1788e729f68cSMatthew G. Knepley 1789e729f68cSMatthew G. Knepley Level: developer 1790e729f68cSMatthew G. Knepley 17911cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1792e729f68cSMatthew G. Knepley @*/ 1793d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1794d71ae5a4SJacob Faibussowitsch { 1795e729f68cSMatthew G. Knepley PetscSection section; 1796e729f68cSMatthew G. Knepley PetscQuadrature quad; 1797e729f68cSMatthew G. Knepley Vec localX; 17984bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 1799e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 18004bee2e38SMatthew G. Knepley PetscReal *coords; 1801e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1802485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset; 1803e729f68cSMatthew G. Knepley 1804e729f68cSMatthew G. Knepley PetscFunctionBegin; 18059566063dSJacob Faibussowitsch PetscCall(VecSet(D, 0.0)); 18069566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18079566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 18089566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 18099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 18109566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 18119566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 18129566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 18139566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 1814e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1815e729f68cSMatthew G. Knepley PetscObject obj; 1816e729f68cSMatthew G. Knepley PetscClassId id; 1817e729f68cSMatthew G. Knepley PetscInt Nc; 1818e729f68cSMatthew G. Knepley 18199566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 18209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1821e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1822e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 1823e729f68cSMatthew G. Knepley 18249566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 18259566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 1826e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1827e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 1828e729f68cSMatthew G. Knepley 18299566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 18309566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 183163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1832e729f68cSMatthew G. Knepley numComponents += Nc; 1833e729f68cSMatthew G. Knepley } 18349566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 183563a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 18369566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 18379566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1838e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1839e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 18406f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 18419c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1842e729f68cSMatthew G. Knepley 18439566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 1844e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x)); 1845e729f68cSMatthew G. Knepley 1846e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1847e729f68cSMatthew G. Knepley PetscObject obj; 1848e729f68cSMatthew G. Knepley PetscClassId id; 1849e729f68cSMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 1850e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1851e729f68cSMatthew G. Knepley 18529566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 18539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 18549371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 18559371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 18569371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 18579371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 18589371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 18599371c9d4SSatish Balay Nb = 1; 18609371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 186123f34ed2SToby Isaac if (funcs[field]) { 18627318780aSToby Isaac for (q = 0; q < Nq; ++q) { 18632a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 18642a4e142eSMatthew G. Knepley 18652a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 18662a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 18672a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 18682a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 186963a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 18709566063dSJacob Faibussowitsch PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx)); 1871c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument) 1872e735a8a9SMatthew G. Knepley if (ierr) { 18739566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 18749566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 18759566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1876e735a8a9SMatthew G. Knepley } 1877c3e24edfSBarry Smith #endif 18789566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 18799566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 188063a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1881e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1882beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 18834bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1884e729f68cSMatthew G. Knepley } 1885e729f68cSMatthew G. Knepley } 188623f34ed2SToby Isaac } 1887beaa55a6SMatthew G. Knepley fieldOffset += Nb; 18889c3cf19fSMatthew G. Knepley qc += Nc; 1889e729f68cSMatthew G. Knepley } 18909566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 18919566063dSJacob Faibussowitsch PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES)); 1892e729f68cSMatthew G. Knepley } 18939566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 18949566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 18959566063dSJacob Faibussowitsch PetscCall(VecSqrtAbs(D)); 18963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1897e729f68cSMatthew G. Knepley } 1898e729f68cSMatthew G. Knepley 18995f0b18bfSMatthew G. Knepley /*@ 190020f4b53cSBarry Smith DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1 19015f0b18bfSMatthew G. Knepley 190220f4b53cSBarry Smith Collective 19035f0b18bfSMatthew G. Knepley 19045f0b18bfSMatthew G. Knepley Input Parameters: 1905a1cb98faSBarry Smith + dm - The `DM` 19065f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 19075f0b18bfSMatthew G. Knepley 19085f0b18bfSMatthew G. Knepley Output Parameter: 1909a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function 19105f0b18bfSMatthew G. Knepley 19115f0b18bfSMatthew G. Knepley Level: developer 19125f0b18bfSMatthew G. Knepley 1913a1cb98faSBarry Smith Note: 1914a1cb98faSBarry Smith $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 1915a1cb98faSBarry Smith 19161cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 19175f0b18bfSMatthew G. Knepley @*/ 1918d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC) 1919d71ae5a4SJacob Faibussowitsch { 19205f0b18bfSMatthew G. Knepley PetscInt debug = ((DM_Plex *)dm->data)->printFEM; 19215f0b18bfSMatthew G. Knepley DM dmc; 19225f0b18bfSMatthew G. Knepley PetscQuadrature quad; 19235f0b18bfSMatthew G. Knepley PetscScalar *interpolant, *valsum; 19245f0b18bfSMatthew G. Knepley PetscFEGeom fegeom; 19255f0b18bfSMatthew G. Knepley PetscReal *coords; 19265f0b18bfSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 19275f0b18bfSMatthew G. Knepley PetscInt dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v; 19285f0b18bfSMatthew G. Knepley 19295f0b18bfSMatthew G. Knepley PetscFunctionBegin; 19309566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 19319566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmc)); 19329566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 19339566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19349566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 19355f0b18bfSMatthew G. Knepley fegeom.dimEmbed = cdim; 19369566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 19375f0b18bfSMatthew G. Knepley PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 19385f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 19395f0b18bfSMatthew G. Knepley PetscObject obj; 19405f0b18bfSMatthew G. Knepley PetscClassId id; 19415f0b18bfSMatthew G. Knepley PetscInt fNc; 19425f0b18bfSMatthew G. Knepley 19439566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19455f0b18bfSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 19465f0b18bfSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 19475f0b18bfSMatthew G. Knepley 19489566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 19499566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &fNc)); 19505f0b18bfSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 19515f0b18bfSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 19525f0b18bfSMatthew G. Knepley 19539566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 19549566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &fNc)); 195563a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 19565f0b18bfSMatthew G. Knepley Nc += fNc; 19575f0b18bfSMatthew G. Knepley } 19589566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 195963a3b9bcSJacob Faibussowitsch PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc); 19609566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ)); 19619566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 19629566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 19635f0b18bfSMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 19645f0b18bfSMatthew G. Knepley PetscScalar volsum = 0.0; 19655f0b18bfSMatthew G. Knepley PetscInt *star = NULL; 19665f0b18bfSMatthew G. Knepley PetscInt starSize, st, fc; 19675f0b18bfSMatthew G. Knepley 19689566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(valsum, Nc)); 19699566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 19705f0b18bfSMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 19715f0b18bfSMatthew G. Knepley const PetscInt cell = star[st]; 19725f0b18bfSMatthew G. Knepley PetscScalar *val = &valsum[Nc]; 19735f0b18bfSMatthew G. Knepley PetscScalar *x = NULL; 19745f0b18bfSMatthew G. Knepley PetscReal vol = 0.0; 19755f0b18bfSMatthew G. Knepley PetscInt foff = 0; 19765f0b18bfSMatthew G. Knepley 19775f0b18bfSMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 19789566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 19799566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 19805f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 19815f0b18bfSMatthew G. Knepley PetscObject obj; 19825f0b18bfSMatthew G. Knepley PetscClassId id; 19835f0b18bfSMatthew G. Knepley PetscInt Nb, fNc, q; 19845f0b18bfSMatthew G. Knepley 19859566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(val, Nc)); 19869566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 19879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19889371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 19899371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc)); 19909371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 19919371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 19929371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc)); 19939371c9d4SSatish Balay Nb = 1; 19949371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 19955f0b18bfSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 19965f0b18bfSMatthew G. Knepley const PetscReal wt = quadWeights[q] * fegeom.detJ[q]; 19975f0b18bfSMatthew G. Knepley PetscFEGeom qgeom; 19985f0b18bfSMatthew G. Knepley 19995f0b18bfSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 20005f0b18bfSMatthew G. Knepley qgeom.J = &fegeom.J[q * cdim * cdim]; 20015f0b18bfSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * cdim * cdim]; 20025f0b18bfSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 200363a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 20049566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant)); 200563a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 20065f0b18bfSMatthew G. Knepley for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt; 20075f0b18bfSMatthew G. Knepley vol += wt; 20085f0b18bfSMatthew G. Knepley } 20095f0b18bfSMatthew G. Knepley foff += Nb; 20105f0b18bfSMatthew G. Knepley } 20119566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 20125f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc]; 20135f0b18bfSMatthew G. Knepley volsum += vol; 20145f0b18bfSMatthew G. Knepley if (debug) { 20159566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell)); 20165f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 20179566063dSJacob Faibussowitsch if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 20189566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc]))); 20195f0b18bfSMatthew G. Knepley } 20209566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 20215f0b18bfSMatthew G. Knepley } 20225f0b18bfSMatthew G. Knepley } 20235f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum; 20249566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 20259566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES)); 20265f0b18bfSMatthew G. Knepley } 20279566063dSJacob Faibussowitsch PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 20283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20295f0b18bfSMatthew G. Knepley } 20305f0b18bfSMatthew G. Knepley 20315f0b18bfSMatthew G. Knepley /*@ 203220f4b53cSBarry Smith DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1 20331555c271SMatthew G. Knepley 203420f4b53cSBarry Smith Collective 2035c0f8e1fdSMatthew G. Knepley 20361555c271SMatthew G. Knepley Input Parameters: 2037a1cb98faSBarry Smith + dm - The `DM` 20385f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 20391555c271SMatthew G. Knepley 20401555c271SMatthew G. Knepley Output Parameter: 2041a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient 20421555c271SMatthew G. Knepley 20431555c271SMatthew G. Knepley Level: developer 20441555c271SMatthew G. Knepley 2045a1cb98faSBarry Smith Note: 2046a1cb98faSBarry Smith $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 2047a1cb98faSBarry Smith 20481cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 20491555c271SMatthew G. Knepley @*/ 2050d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 2051d71ae5a4SJacob Faibussowitsch { 2052db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2053db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 20541555c271SMatthew G. Knepley DM dmC; 20551555c271SMatthew G. Knepley PetscQuadrature quad; 20561555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 20574bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 20584bee2e38SMatthew G. Knepley PetscReal *coords; 20591555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 2060485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 20611555c271SMatthew G. Knepley 20621555c271SMatthew G. Knepley PetscFunctionBegin; 20639566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 20649566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmC)); 20659566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 20669566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 20679566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 20684bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 20699566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 20705f80ce2aSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 20711555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 20721555c271SMatthew G. Knepley PetscObject obj; 20731555c271SMatthew G. Knepley PetscClassId id; 20741555c271SMatthew G. Knepley PetscInt Nc; 20751555c271SMatthew G. Knepley 20769566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 20779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 20781555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 20791555c271SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 20801555c271SMatthew G. Knepley 20819566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 20829566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 20831555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 20841555c271SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 20851555c271SMatthew G. Knepley 20869566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 20879566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 208863a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 20891555c271SMatthew G. Knepley numComponents += Nc; 20901555c271SMatthew G. Knepley } 20919566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 209263a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 20939566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 20949566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 20959566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 20961555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 20971555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 20981555c271SMatthew G. Knepley PetscInt *star = NULL; 20991555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 21001555c271SMatthew G. Knepley 21019566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(gradsum, coordDim * numComponents)); 21029566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 21031555c271SMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 21041555c271SMatthew G. Knepley const PetscInt cell = star[st]; 21051555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim * numComponents]; 21061555c271SMatthew G. Knepley PetscScalar *x = NULL; 21071555c271SMatthew G. Knepley PetscReal vol = 0.0; 21081555c271SMatthew G. Knepley 21091555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 21109566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 21119566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 21121555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 21131555c271SMatthew G. Knepley PetscObject obj; 21141555c271SMatthew G. Knepley PetscClassId id; 21151555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 21161555c271SMatthew G. Knepley 21179566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(grad, coordDim * numComponents)); 21189566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 21199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 21209371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 21219371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 21229371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 21239371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 21249371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 21259371c9d4SSatish Balay Nb = 1; 21269371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 21271555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 21282a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 21292a4e142eSMatthew G. Knepley 21302a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 21312a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 21322a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 21332a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 213463a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 21359566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant)); 213663a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 21371555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 213853d2db2dSJoe Wallwork const PetscReal wt = quadWeights[q * qNc + qc]; 21391555c271SMatthew G. Knepley 21404bee2e38SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q]; 21411555c271SMatthew G. Knepley } 21424bee2e38SMatthew G. Knepley vol += quadWeights[q * qNc] * fegeom.detJ[q]; 21431555c271SMatthew G. Knepley } 21441555c271SMatthew G. Knepley fieldOffset += Nb; 21451555c271SMatthew G. Knepley qc += Nc; 21461555c271SMatthew G. Knepley } 21479566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 2148f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 2149ad540459SPierre Jolivet for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d]; 2150f8527842SMatthew G. Knepley } 2151f8527842SMatthew G. Knepley volsum += vol; 2152db1066baSMatthew G. Knepley if (debug) { 21539566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell)); 21541555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 21551555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 21569566063dSJacob Faibussowitsch if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 21579566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d]))); 21581555c271SMatthew G. Knepley } 21591555c271SMatthew G. Knepley } 21609566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 2161db1066baSMatthew G. Knepley } 21621555c271SMatthew G. Knepley } 21631555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 21641555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum; 21651555c271SMatthew G. Knepley } 21669566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 21679566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 21681555c271SMatthew G. Knepley } 21699566063dSJacob Faibussowitsch PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 21703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21711555c271SMatthew G. Knepley } 21721555c271SMatthew G. Knepley 21736493148fSStefano Zampini PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec locX, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 2174d71ae5a4SJacob Faibussowitsch { 2175cbf8eb3cSStefano Zampini DM dmAux = NULL, plexA = NULL; 217661aaff12SToby Isaac PetscDS prob, probAux = NULL; 217773d901b8SMatthew G. Knepley PetscSection section, sectionAux; 21786493148fSStefano Zampini Vec locA; 2179c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 2180c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 2181338f77d5SMatthew G. Knepley /* DS */ 2182338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 2183338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 21848e3a54c0SPierre Jolivet PetscScalar *u, *a = NULL; 2185338f77d5SMatthew G. Knepley const PetscScalar *constants; 2186338f77d5SMatthew G. Knepley /* Geometry */ 2187c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 2188338f77d5SMatthew G. Knepley DM dmGrad; 2189c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 2190338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 2191b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 2192338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 2193b7260050SToby Isaac PetscInt maxDegree; 2194c330f8ffSToby Isaac DMField coordField; 2195c330f8ffSToby Isaac IS cellIS; 219673d901b8SMatthew G. Knepley 219773d901b8SMatthew G. Knepley PetscFunctionBegin; 21989566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 21999566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 22009566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 22019566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 2202338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 2203b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2204b5a3613cSMatthew G. Knepley PetscObject obj; 2205b5a3613cSMatthew G. Knepley PetscClassId id; 2206b5a3613cSMatthew G. Knepley 22079566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 22089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2209338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 2210338f77d5SMatthew G. Knepley } 2211338f77d5SMatthew G. Knepley /* Read DS information */ 22129566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 22139566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 22149566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 22159566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS)); 22169566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 2217338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 22189566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 22199a2a23afSMatthew G. Knepley if (locA) { 22209566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 2221cbf8eb3cSStefano Zampini PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 22229566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 22239566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 22249566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 22259566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 22269566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 2227338f77d5SMatthew G. Knepley } 2228338f77d5SMatthew G. Knepley /* Allocate data arrays */ 22299566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numCells * totDim, &u)); 22309566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 2231338f77d5SMatthew G. Knepley /* Read out geometry */ 22329566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 22339566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 2234b7260050SToby Isaac if (maxDegree <= 1) { 22359566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 223648a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM)); 2237b5a3613cSMatthew G. Knepley } 2238b5a3613cSMatthew G. Knepley if (useFVM) { 2239338f77d5SMatthew G. Knepley PetscFV fv = NULL; 2240b5a3613cSMatthew G. Knepley Vec grad; 2241b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 2242b5a3613cSMatthew G. Knepley PetscBool compGrad; 2243b5a3613cSMatthew G. Knepley 2244338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2245338f77d5SMatthew G. Knepley PetscObject obj; 2246338f77d5SMatthew G. Knepley PetscClassId id; 2247338f77d5SMatthew G. Knepley 22489566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 22499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 22509371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 22519371c9d4SSatish Balay fv = (PetscFV)obj; 22529371c9d4SSatish Balay break; 22539371c9d4SSatish Balay } 2254338f77d5SMatthew G. Knepley } 22559566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &compGrad)); 22569566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE)); 22579566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM)); 22589566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad)); 22599566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, compGrad)); 22609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 2261b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 22629566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 22639566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 22649566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 2265b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 22669566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 22679566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 22689566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 22699566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 2270b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 22719566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad)); 22729566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 2273b5a3613cSMatthew G. Knepley } 2274338f77d5SMatthew G. Knepley /* Read out data from inputs */ 227573d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 227673d901b8SMatthew G. Knepley PetscScalar *x = NULL; 227773d901b8SMatthew G. Knepley PetscInt i; 227873d901b8SMatthew G. Knepley 22799566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x)); 22800f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 22819566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x)); 228273d901b8SMatthew G. Knepley if (dmAux) { 2283cbf8eb3cSStefano Zampini PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, c, NULL, &x)); 22840f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 2285cbf8eb3cSStefano Zampini PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, c, NULL, &x)); 228673d901b8SMatthew G. Knepley } 228773d901b8SMatthew G. Knepley } 2288338f77d5SMatthew G. Knepley /* Do integration for each field */ 228973d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2290c1f031eeSMatthew G. Knepley PetscObject obj; 2291c1f031eeSMatthew G. Knepley PetscClassId id; 2292c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 229373d901b8SMatthew G. Knepley 22949566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 22959566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2296c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2297c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2298c1f031eeSMatthew G. Knepley PetscQuadrature q; 2299c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 2300c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 2301c1f031eeSMatthew G. Knepley 23029566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 23039566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 23049566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 23059566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 2306c1f031eeSMatthew G. Knepley blockSize = Nb * Nq; 230773d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 23089566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 230973d901b8SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 231073d901b8SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 231173d901b8SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 231273d901b8SMatthew G. Knepley offset = numCells - Nr; 231348a46eb9SPierre Jolivet if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM)); 23149566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 23159566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral)); 23169566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom)); 23178e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &cintegral[offset * Nf])); 23189566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom)); 231948a46eb9SPierre Jolivet if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 2320c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 2321c1f031eeSMatthew G. Knepley PetscInt foff; 2322420e96edSMatthew G. Knepley PetscPointFunc obj_func; 2323b69edc29SMatthew G. Knepley PetscScalar lint; 2324c1f031eeSMatthew G. Knepley 23259566063dSJacob Faibussowitsch PetscCall(PetscDSGetObjective(prob, f, &obj_func)); 23269566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, f, &foff)); 2327c1f031eeSMatthew G. Knepley if (obj_func) { 2328c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 2329b5a3613cSMatthew G. Knepley PetscScalar *u_x; 2330b5a3613cSMatthew G. Knepley 23319566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x)); 2332338f77d5SMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, &a[totDimAux * c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 2333338f77d5SMatthew G. Knepley cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume; 233473d901b8SMatthew G. Knepley } 2335c1f031eeSMatthew G. Knepley } 233663a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 2337c1f031eeSMatthew G. Knepley } 2338338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 2339b5a3613cSMatthew G. Knepley if (useFVM) { 23409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 23419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 23429566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 23439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&faceGeometryFVM)); 23449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cellGeometryFVM)); 23459566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmGrad)); 2346b5a3613cSMatthew G. Knepley } 23479566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscFree(a)); 2348cbf8eb3cSStefano Zampini PetscCall(DMDestroy(&plexA)); 23499566063dSJacob Faibussowitsch PetscCall(PetscFree(u)); 2350338f77d5SMatthew G. Knepley /* Cleanup */ 235148a46eb9SPierre Jolivet if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 23529566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 23539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 23543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2355338f77d5SMatthew G. Knepley } 2356338f77d5SMatthew G. Knepley 2357338f77d5SMatthew G. Knepley /*@ 2358338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 2359338f77d5SMatthew G. Knepley 2360338f77d5SMatthew G. Knepley Input Parameters: 2361338f77d5SMatthew G. Knepley + dm - The mesh 2362338f77d5SMatthew G. Knepley . X - Global input vector 2363338f77d5SMatthew G. Knepley - user - The user context 2364338f77d5SMatthew G. Knepley 2365338f77d5SMatthew G. Knepley Output Parameter: 2366338f77d5SMatthew G. Knepley . integral - Integral for each field 2367338f77d5SMatthew G. Knepley 2368338f77d5SMatthew G. Knepley Level: developer 2369338f77d5SMatthew G. Knepley 23701cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2371338f77d5SMatthew G. Knepley @*/ 2372d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 2373d71ae5a4SJacob Faibussowitsch { 2374cbf8eb3cSStefano Zampini PetscInt printFEM; 2375b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 2376412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 23776493148fSStefano Zampini Vec locX; 2378338f77d5SMatthew G. Knepley 2379338f77d5SMatthew G. Knepley PetscFunctionBegin; 2380338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2381338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 23824f572ea9SToby Isaac PetscAssertPointer(integral, 3); 23839566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2384cbf8eb3cSStefano Zampini PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE)); 23859566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 23869566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 23879566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2388338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 23899566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral)); 23906493148fSStefano Zampini /* Get local solution with boundary values */ 23916493148fSStefano Zampini PetscCall(DMGetLocalVector(dm, &locX)); 23926493148fSStefano Zampini PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 23936493148fSStefano Zampini PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 23946493148fSStefano Zampini PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 23956493148fSStefano Zampini PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user)); 23966493148fSStefano Zampini PetscCall(DMRestoreLocalVector(dm, &locX)); 2397cbf8eb3cSStefano Zampini printFEM = ((DM_Plex *)dm->data)->printFEM; 2398338f77d5SMatthew G. Knepley /* Sum up values */ 2399338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2400338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2401338f77d5SMatthew G. Knepley 2402cbf8eb3cSStefano Zampini if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 2403b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f]; 2404338f77d5SMatthew G. Knepley } 24051c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 2406cbf8eb3cSStefano Zampini if (printFEM) { 24079566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:")); 24089566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f]))); 24099566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n")); 241073d901b8SMatthew G. Knepley } 24119566063dSJacob Faibussowitsch PetscCall(PetscFree2(lintegral, cintegral)); 24129566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2413cbf8eb3cSStefano Zampini PetscCall(DMDestroy(&dm)); 24143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2415338f77d5SMatthew G. Knepley } 2416338f77d5SMatthew G. Knepley 2417338f77d5SMatthew G. Knepley /*@ 2418338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 2419338f77d5SMatthew G. Knepley 2420338f77d5SMatthew G. Knepley Input Parameters: 2421338f77d5SMatthew G. Knepley + dm - The mesh 2422338f77d5SMatthew G. Knepley . X - Global input vector 2423338f77d5SMatthew G. Knepley - user - The user context 2424338f77d5SMatthew G. Knepley 2425338f77d5SMatthew G. Knepley Output Parameter: 242660225df5SJacob Faibussowitsch . F - Cellwise integrals for each field 2427338f77d5SMatthew G. Knepley 2428338f77d5SMatthew G. Knepley Level: developer 2429338f77d5SMatthew G. Knepley 24301cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2431338f77d5SMatthew G. Knepley @*/ 2432d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 2433d71ae5a4SJacob Faibussowitsch { 2434cbf8eb3cSStefano Zampini PetscInt printFEM; 2435338f77d5SMatthew G. Knepley DM dmF; 24369c8ab049SStefano Zampini PetscSection sectionF = NULL; 2437338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 24389c8ab049SStefano Zampini PetscInt Nf, f, cellHeight, cStart, cEnd, cell, n; 24396493148fSStefano Zampini Vec locX; 2440338f77d5SMatthew G. Knepley 2441338f77d5SMatthew G. Knepley PetscFunctionBegin; 2442338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2443338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2444338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 24459566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2446cbf8eb3cSStefano Zampini PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE)); 24479566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 24489566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 24499566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2450338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 24519566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral)); 24526493148fSStefano Zampini /* Get local solution with boundary values */ 24536493148fSStefano Zampini PetscCall(DMGetLocalVector(dm, &locX)); 24546493148fSStefano Zampini PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 24556493148fSStefano Zampini PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 24566493148fSStefano Zampini PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 24576493148fSStefano Zampini PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user)); 24586493148fSStefano Zampini PetscCall(DMRestoreLocalVector(dm, &locX)); 2459338f77d5SMatthew G. Knepley /* Put values in F */ 24609566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &af)); 24619c8ab049SStefano Zampini PetscCall(VecGetDM(F, &dmF)); 24629c8ab049SStefano Zampini if (dmF) PetscCall(DMGetLocalSection(dmF, §ionF)); 24639c8ab049SStefano Zampini PetscCall(VecGetLocalSize(F, &n)); 24649c8ab049SStefano Zampini PetscCheck(n >= (cEnd - cStart) * Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vector size %" PetscInt_FMT " < %" PetscInt_FMT, n, (cEnd - cStart) * Nf); 2465cbf8eb3cSStefano Zampini printFEM = ((DM_Plex *)dm->data)->printFEM; 2466338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2467338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 24689c8ab049SStefano Zampini PetscInt dof = Nf, off = c * Nf; 2469338f77d5SMatthew G. Knepley 2470cbf8eb3cSStefano Zampini if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 24719c8ab049SStefano Zampini if (sectionF) { 24729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionF, cell, &dof)); 24739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionF, cell, &off)); 24749c8ab049SStefano Zampini } 247563a3b9bcSJacob Faibussowitsch PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf); 2476338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f]; 2477338f77d5SMatthew G. Knepley } 24789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &af)); 24799566063dSJacob Faibussowitsch PetscCall(PetscFree(cintegral)); 24809566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2481cbf8eb3cSStefano Zampini PetscCall(DMDestroy(&dm)); 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 248373d901b8SMatthew G. Knepley } 248473d901b8SMatthew G. Knepley 2485d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user) 2486d71ae5a4SJacob Faibussowitsch { 24879b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 2488a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 24899b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 24909b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 24919b6f715bSMatthew G. Knepley Vec locA = NULL; 24929b6f715bSMatthew G. Knepley DMField coordField; 24939b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 24949b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 24959b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 249664c72086SMatthew G. Knepley const PetscScalar *constants; 24979b6f715bSMatthew G. Knepley PetscInt numConstants, f; 249864c72086SMatthew G. Knepley 249964c72086SMatthew G. Knepley PetscFunctionBegin; 25009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 25019566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 25029566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 25039566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 25049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 250564c72086SMatthew G. Knepley /* Determine which discretizations we have */ 25069b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 250764c72086SMatthew G. Knepley PetscObject obj; 250864c72086SMatthew G. Knepley PetscClassId id; 250964c72086SMatthew G. Knepley 25109566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 25119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 251263a3b9bcSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f); 251364c72086SMatthew G. Knepley } 251464c72086SMatthew G. Knepley /* Read DS information */ 25159566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 25169566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 25179566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 25189566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 251964c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 25209566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 25219b6f715bSMatthew G. Knepley if (locA) { 25229b6f715bSMatthew G. Knepley DM dmAux; 25239b6f715bSMatthew G. Knepley 25249566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 25259566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 25269566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 25279566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 25289566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 25299566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 25309566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 25319566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 253264c72086SMatthew G. Knepley } 25339b6f715bSMatthew G. Knepley /* Integrate over points */ 25349b6f715bSMatthew G. Knepley { 25359b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 2536b7260050SToby Isaac PetscInt maxDegree; 25379b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 25389b6f715bSMatthew G. Knepley const PetscInt *points; 25399b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 25409b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 254164c72086SMatthew G. Knepley 25429566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 25439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 25449566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a)); 25459566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 254664c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 254764c72086SMatthew G. Knepley PetscFE fe; 254864c72086SMatthew G. Knepley 25499566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 25509566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 25519b6f715bSMatthew G. Knepley if (!qGeom) { 25529566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 25539566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 25549b6f715bSMatthew G. Knepley } 25559566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 25569566063dSJacob Faibussowitsch PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 25579b6f715bSMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 2558f15274beSMatthew Knepley const PetscInt point = points[face], *support; 25599b6f715bSMatthew G. Knepley PetscScalar *x = NULL; 2560f15274beSMatthew Knepley PetscInt i; 25619b6f715bSMatthew G. Knepley 25629566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 25639566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 25649b6f715bSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 25659566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 25669b6f715bSMatthew G. Knepley if (locA) { 25679b6f715bSMatthew G. Knepley PetscInt subp; 25689566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 25699566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 25709b6f715bSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i]; 25719566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 25729b6f715bSMatthew G. Knepley } 25739b6f715bSMatthew G. Knepley } 25749b6f715bSMatthew G. Knepley /* Get blocking */ 25759b6f715bSMatthew G. Knepley { 25769b6f715bSMatthew G. Knepley PetscQuadrature q; 25779b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 25789b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 25799b6f715bSMatthew G. Knepley 25809566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 25819566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 25829566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 25839566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 258464c72086SMatthew G. Knepley blockSize = Nb * Nq; 258564c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 25869b6f715bSMatthew G. Knepley chunkSize = numBatches * batchSize; 25879566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 25889b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 25899b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 259064c72086SMatthew G. Knepley offset = numFaces - Nr; 259164c72086SMatthew G. Knepley } 25929b6f715bSMatthew G. Knepley /* Do integration for each field */ 25939b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 25949566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom)); 25959566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral)); 25969566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 259764c72086SMatthew G. Knepley } 25989566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 25998e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &fintegral[offset * Nf])); 26009566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 260164c72086SMatthew G. Knepley /* Cleanup data arrays */ 26029566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 26039566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 26049566063dSJacob Faibussowitsch PetscCall(PetscFree2(u, a)); 26059566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 260664c72086SMatthew G. Knepley } 260764c72086SMatthew G. Knepley } 26089566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 26099566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 26103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26119b6f715bSMatthew G. Knepley } 26129b6f715bSMatthew G. Knepley 261360225df5SJacob Faibussowitsch /*@C 26149b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 26159b6f715bSMatthew G. Knepley 26169b6f715bSMatthew G. Knepley Input Parameters: 26179b6f715bSMatthew G. Knepley + dm - The mesh 26189b6f715bSMatthew G. Knepley . X - Global input vector 2619a1cb98faSBarry Smith . label - The boundary `DMLabel` 2620a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values 2621a1cb98faSBarry Smith . vals - The label values to use, or NULL for all values 262267b8a455SSatish Balay . func - The function to integrate along the boundary 26239b6f715bSMatthew G. Knepley - user - The user context 26249b6f715bSMatthew G. Knepley 26259b6f715bSMatthew G. Knepley Output Parameter: 26269b6f715bSMatthew G. Knepley . integral - Integral for each field 26279b6f715bSMatthew G. Knepley 26289b6f715bSMatthew G. Knepley Level: developer 26299b6f715bSMatthew G. Knepley 26301cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()` 26319b6f715bSMatthew G. Knepley @*/ 2632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user) 2633d71ae5a4SJacob Faibussowitsch { 26349b6f715bSMatthew G. Knepley Vec locX; 26359b6f715bSMatthew G. Knepley PetscSection section; 26369b6f715bSMatthew G. Knepley DMLabel depthLabel; 26379b6f715bSMatthew G. Knepley IS facetIS; 26389b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 26399b6f715bSMatthew G. Knepley 26409b6f715bSMatthew G. Knepley PetscFunctionBegin; 26419b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26429b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2643292bffcbSToby Isaac PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 26444f572ea9SToby Isaac if (vals) PetscAssertPointer(vals, 5); 26454f572ea9SToby Isaac PetscAssertPointer(integral, 7); 26469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 26479566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 26489566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 26499566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 26509566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 26519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 26529b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 26539566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 26549566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 26559566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 26569566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 26579b6f715bSMatthew G. Knepley /* Loop over label values */ 26589566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(integral, Nf)); 26599b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 26609b6f715bSMatthew G. Knepley IS pointIS; 26619b6f715bSMatthew G. Knepley PetscInt numFaces, face; 26629b6f715bSMatthew G. Knepley PetscScalar *fintegral; 26639b6f715bSMatthew G. Knepley 26649566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS)); 26659b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 26669b6f715bSMatthew G. Knepley { 26679b6f715bSMatthew G. Knepley IS isectIS; 26689b6f715bSMatthew G. Knepley 26699b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 26709566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 26719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 26729b6f715bSMatthew G. Knepley pointIS = isectIS; 26739b6f715bSMatthew G. Knepley } 26749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 26759566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numFaces * Nf, &fintegral)); 26769566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user)); 26779b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 26789371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 26799371c9d4SSatish Balay for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f]; 26809566063dSJacob Faibussowitsch PetscCall(PetscFree(fintegral)); 26819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 26829b6f715bSMatthew G. Knepley } 26839566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 26849566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 26859566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 26863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 268764c72086SMatthew G. Knepley } 268864c72086SMatthew G. Knepley 2689d69c5d34SMatthew G. Knepley /*@ 26900318f8a0SStefano Zampini DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix from the coarse `DM` to a uniformly refined `DM`. 2691d69c5d34SMatthew G. Knepley 2692d69c5d34SMatthew G. Knepley Input Parameters: 2693cf51de39SMatthew G. Knepley + dmc - The coarse mesh 2694cf51de39SMatthew G. Knepley . dmf - The fine mesh 2695cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology 2696d69c5d34SMatthew G. Knepley - user - The user context 2697d69c5d34SMatthew G. Knepley 2698d69c5d34SMatthew G. Knepley Output Parameter: 2699934789fcSMatthew G. Knepley . In - The interpolation matrix 2700d69c5d34SMatthew G. Knepley 2701d69c5d34SMatthew G. Knepley Level: developer 2702d69c5d34SMatthew G. Knepley 27031cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 2704d69c5d34SMatthew G. Knepley @*/ 2705d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user) 2706d71ae5a4SJacob Faibussowitsch { 2707d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmc->data; 2708d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 2709d69c5d34SMatthew G. Knepley PetscFE *feRef; 271097c42addSMatthew G. Knepley PetscFV *fvRef; 2711d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2712d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2713d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 2714485ad865SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 27152ea9c922SToby Isaac PetscInt cTotDim = 0, rTotDim = 0; 2716d69c5d34SMatthew G. Knepley 2717d69c5d34SMatthew G. Knepley PetscFunctionBegin; 27189566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 27199566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 27209566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 27219566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 27229566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 27239566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 27249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 27259566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 27269566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef)); 2727d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 27282ea9c922SToby Isaac PetscObject obj, objc; 27292ea9c922SToby Isaac PetscClassId id, idc; 27302ea9c922SToby Isaac PetscInt rNb = 0, Nc = 0, cNb = 0; 2731d69c5d34SMatthew G. Knepley 27329566063dSJacob Faibussowitsch PetscCall(DMGetField(dmf, f, NULL, &obj)); 27339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 273497c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 273597c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 273697c42addSMatthew G. Knepley 2737cf51de39SMatthew G. Knepley if (isRefined) { 27389566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 2739cf51de39SMatthew G. Knepley } else { 27409566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fe)); 2741cf51de39SMatthew G. Knepley feRef[f] = fe; 2742cf51de39SMatthew G. Knepley } 27439566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &rNb)); 27449566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 274597c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 274697c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 274797c42addSMatthew G. Knepley PetscDualSpace Q; 274897c42addSMatthew G. Knepley 2749cf51de39SMatthew G. Knepley if (isRefined) { 27509566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 2751cf51de39SMatthew G. Knepley } else { 27529566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fv)); 2753cf51de39SMatthew G. Knepley fvRef[f] = fv; 2754cf51de39SMatthew G. Knepley } 27559566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 27569566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &rNb)); 27579566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 27589566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 275997c42addSMatthew G. Knepley } 27609566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, f, NULL, &objc)); 27619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(objc, &idc)); 27622ea9c922SToby Isaac if (idc == PETSCFE_CLASSID) { 27632ea9c922SToby Isaac PetscFE fe = (PetscFE)objc; 27642ea9c922SToby Isaac 27659566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cNb)); 27662ea9c922SToby Isaac } else if (id == PETSCFV_CLASSID) { 27672ea9c922SToby Isaac PetscFV fv = (PetscFV)obj; 27682ea9c922SToby Isaac PetscDualSpace Q; 27692ea9c922SToby Isaac 27709566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 27719566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &cNb)); 2772d69c5d34SMatthew G. Knepley } 27732ea9c922SToby Isaac rTotDim += rNb; 27742ea9c922SToby Isaac cTotDim += cNb; 27752ea9c922SToby Isaac } 27769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat)); 27779566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim)); 2778d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2779d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2780d69c5d34SMatthew G. Knepley PetscQuadrature f; 2781d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2782d69c5d34SMatthew G. Knepley PetscReal *points; 2783d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2784d69c5d34SMatthew G. Knepley 2785d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 278697c42addSMatthew G. Knepley if (feRef[fieldI]) { 27879566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref)); 27889566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc)); 278997c42addSMatthew G. Knepley } else { 27909566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref)); 27919566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc)); 279297c42addSMatthew G. Knepley } 27939566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim)); 2794d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 27959566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 27969566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL)); 2797d69c5d34SMatthew G. Knepley npoints += Np; 2798d69c5d34SMatthew G. Knepley } 27999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npoints * dim, &points)); 2800d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 28019566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 28029566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL)); 28039371c9d4SSatish Balay for (p = 0; p < Np; ++p, ++k) 28049371c9d4SSatish Balay for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d]; 2805d69c5d34SMatthew G. Knepley } 2806d69c5d34SMatthew G. Knepley 2807d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 280897c42addSMatthew G. Knepley PetscObject obj; 280997c42addSMatthew G. Knepley PetscClassId id; 28109c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 2811d69c5d34SMatthew G. Knepley 28129566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, fieldJ, NULL, &obj)); 28139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 281497c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 281597c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2816ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 2817d69c5d34SMatthew G. Knepley 2818d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 28199566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &NcJ)); 28209566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 2821ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 2822ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 282363a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 28249566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T)); 2825d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 28269566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 28279566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 282863a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 2829d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 283036a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2831d172c84bSMatthew G. Knepley /* 2832d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 2833d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 2834d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 2835d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 2836d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 2837d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 2838d172c84bSMatthew G. Knepley */ 2839ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c]; 284036a6d9c0SMatthew G. Knepley } 2841d69c5d34SMatthew G. Knepley } 2842d69c5d34SMatthew G. Knepley } 28439566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 2844ffe73a53SMatthew G. Knepley } 284597c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 284697c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 284797c42addSMatthew G. Knepley 284897c42addSMatthew G. Knepley /* Evaluate constant function at points */ 28499566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcJ)); 285097c42addSMatthew G. Knepley cpdim = 1; 285197c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 285297c42addSMatthew G. Knepley if (fieldI == fieldJ) { 285363a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 285497c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 28559566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 28569566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 285763a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 285897c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 285997c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2860458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c]; 286197c42addSMatthew G. Knepley } 286297c42addSMatthew G. Knepley } 286397c42addSMatthew G. Knepley } 286497c42addSMatthew G. Knepley } 286597c42addSMatthew G. Knepley } 2866d172c84bSMatthew G. Knepley offsetJ += cpdim; 2867d69c5d34SMatthew G. Knepley } 2868d172c84bSMatthew G. Knepley offsetI += fpdim; 28699566063dSJacob Faibussowitsch PetscCall(PetscFree(points)); 2870d69c5d34SMatthew G. Knepley } 28719566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat)); 28727f5b169aSMatthew G. Knepley /* Preallocate matrix */ 28737f5b169aSMatthew G. Knepley { 2874c094ef40SMatthew G. Knepley Mat preallocator; 2875c094ef40SMatthew G. Knepley PetscScalar *vals; 2876c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 2877c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 28787f5b169aSMatthew G. Knepley 28799566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 28809566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator)); 28819566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 28829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 28839566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 28849566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices)); 28857f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2886cf51de39SMatthew G. Knepley if (isRefined) { 28879566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices)); 28889566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES)); 2889cf51de39SMatthew G. Knepley } else { 2890e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, preallocator, cell, vals, INSERT_VALUES)); 2891cf51de39SMatthew G. Knepley } 28927f5b169aSMatthew G. Knepley } 28939566063dSJacob Faibussowitsch PetscCall(PetscFree3(vals, cellCIndices, cellFIndices)); 28949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 28959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 28969566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In)); 28979566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 28987f5b169aSMatthew G. Knepley } 28997f5b169aSMatthew G. Knepley /* Fill matrix */ 29009566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(In)); 2901d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2902cf51de39SMatthew G. Knepley if (isRefined) { 29039566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 2904cf51de39SMatthew G. Knepley } else { 2905e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, In, c, elemMat, INSERT_VALUES)); 2906cf51de39SMatthew G. Knepley } 2907d69c5d34SMatthew G. Knepley } 29089566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f])); 29099566063dSJacob Faibussowitsch PetscCall(PetscFree2(feRef, fvRef)); 29109566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 29119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 29129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 29139318fe57SMatthew G. Knepley if (mesh->printFEM > 1) { 29149566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name)); 29152ce66baaSPierre Jolivet PetscCall(MatFilter(In, 1.0e-10, PETSC_FALSE, PETSC_FALSE)); 29169566063dSJacob Faibussowitsch PetscCall(MatView(In, NULL)); 2917d69c5d34SMatthew G. Knepley } 29189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 29193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2920d69c5d34SMatthew G. Knepley } 29216c73c22cSMatthew G. Knepley 2922d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 2923d71ae5a4SJacob Faibussowitsch { 2924bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness"); 2925bd041c0cSMatthew G. Knepley } 2926bd041c0cSMatthew G. Knepley 292768132eb9SMatthew G. Knepley /*@ 29280318f8a0SStefano Zampini DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix from the coarse `DM` to a non-nested fine `DM`. 292968132eb9SMatthew G. Knepley 293068132eb9SMatthew G. Knepley Input Parameters: 293168132eb9SMatthew G. Knepley + dmf - The fine mesh 293268132eb9SMatthew G. Knepley . dmc - The coarse mesh 293368132eb9SMatthew G. Knepley - user - The user context 293468132eb9SMatthew G. Knepley 293568132eb9SMatthew G. Knepley Output Parameter: 293668132eb9SMatthew G. Knepley . In - The interpolation matrix 293768132eb9SMatthew G. Knepley 293868132eb9SMatthew G. Knepley Level: developer 293968132eb9SMatthew G. Knepley 29401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 294168132eb9SMatthew G. Knepley @*/ 2942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 2943d71ae5a4SJacob Faibussowitsch { 294464e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 294564e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 29464ef9d792SMatthew G. Knepley PetscDS prob; 2947a0806964SMatthew G. Knepley Mat interp; 2948a0806964SMatthew G. Knepley PetscSection fsection, globalFSection; 2949a0806964SMatthew G. Knepley PetscSection csection, globalCSection; 2950a0806964SMatthew G. Knepley PetscInt locRows, locCols; 29514ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 29524ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 29534ef9d792SMatthew G. Knepley PetscScalar *elemMat; 2954a0806964SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s; 29554ef9d792SMatthew G. Knepley 29564ef9d792SMatthew G. Knepley PetscFunctionBegin; 29579566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 29589566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 29599566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 29609566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 29619566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 29629566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 29639566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 29649566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 29659566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 29669566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 29679566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 2968a0806964SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd)); 29699566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 29709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 29714ef9d792SMatthew G. Knepley 2972a0806964SMatthew G. Knepley PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 2973a0806964SMatthew G. Knepley PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp)); 2974a0806964SMatthew G. Knepley PetscCall(MatSetType(interp, MATPREALLOCATOR)); 2975a0806964SMatthew G. Knepley PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 2976a0806964SMatthew G. Knepley PetscCall(MatSetUp(interp)); 2977a0806964SMatthew G. Knepley for (s = 0; s < 2; ++s) { 29784ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 29794ef9d792SMatthew G. Knepley PetscObject obj; 29804ef9d792SMatthew G. Knepley PetscClassId id; 2981c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 2982ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 29834ef9d792SMatthew G. Knepley PetscQuadrature f; 29844ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2985d0f6233fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, off, i, d; 29864ef9d792SMatthew G. Knepley 2987d0f6233fSMatthew G. Knepley PetscCall(PetscDSGetFieldOffset(prob, field, &off)); 29889566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 29899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 29904ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 29914ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 29924ef9d792SMatthew G. Knepley 29939566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(fe, &Q)); 29949566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 2995a0806964SMatthew G. Knepley if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T)); 29964ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 29974ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 29984ef9d792SMatthew G. Knepley 29999566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 30004ef9d792SMatthew G. Knepley Nc = 1; 300163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 30029566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fpdim)); 30034ef9d792SMatthew G. Knepley /* For each fine grid cell */ 30044ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 30054ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 30064ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 30074ef9d792SMatthew G. Knepley 30089566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 30099566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3010d0f6233fSMatthew G. Knepley PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim); 30114ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 30124ef9d792SMatthew G. Knepley Vec pointVec; 30134ef9d792SMatthew G. Knepley PetscScalar *pV; 301412111d7cSToby Isaac PetscSF coarseCellSF = NULL; 30153a93e3b7SToby Isaac const PetscSFNode *coarseCells; 3016d0f6233fSMatthew G. Knepley PetscInt numCoarseCells, cpdim, row = findices[i + off], q, c, j; 30174ef9d792SMatthew G. Knepley 30184ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 30199566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Q, i, &f)); 30209566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights)); 302163a3b9bcSJacob Faibussowitsch PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc); 30229566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec)); 30239566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 30249566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 30254ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 3026c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3027c330f8ffSToby Isaac 30284ef9d792SMatthew G. Knepley /* Transform point to real space */ 3029c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 30304ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 30314ef9d792SMatthew G. Knepley } 30329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 30334ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 30341555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 30359566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 30364ef9d792SMatthew G. Knepley /* Update preallocation info */ 30379566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 30385f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 30399566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 30404ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3041826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 3042c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3043826eb36dSMatthew G. Knepley 30449566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3045a0806964SMatthew G. Knepley if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim)); 3046a0806964SMatthew G. Knepley else cpdim = 1; 3047a0806964SMatthew G. Knepley 3048a0806964SMatthew G. Knepley if (s) { 30494ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 30509566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3051e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 3052c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 30534ef9d792SMatthew G. Knepley 30544ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 30554ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 3056a0806964SMatthew G. Knepley PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T)); 30579566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 30584ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 30594ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3060ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c]; 30614ef9d792SMatthew G. Knepley } 30624ef9d792SMatthew G. Knepley } else { 30634ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 30649c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c]; 30654ef9d792SMatthew G. Knepley } 30664ef9d792SMatthew G. Knepley } 30679566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 3068a0806964SMatthew G. Knepley } 3069a0806964SMatthew G. Knepley /* Update interpolator */ 3070d0f6233fSMatthew G. Knepley PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim); 3071a0806964SMatthew G. Knepley PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES)); 30729566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 30734ef9d792SMatthew G. Knepley } 30749566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 30759566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 30769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 30774ef9d792SMatthew G. Knepley } 30789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 30794ef9d792SMatthew G. Knepley } 3080a0806964SMatthew G. Knepley if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3081a0806964SMatthew G. Knepley } 3082a0806964SMatthew G. Knepley if (!s) { 3083a0806964SMatthew G. Knepley PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY)); 3084a0806964SMatthew G. Knepley PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY)); 3085a0806964SMatthew G. Knepley PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In)); 3086a0806964SMatthew G. Knepley PetscCall(MatDestroy(&interp)); 3087a0806964SMatthew G. Knepley interp = In; 3088a0806964SMatthew G. Knepley } 30894ef9d792SMatthew G. Knepley } 30909566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 30919566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 30929566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 30939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 30949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 30959566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 30963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30974ef9d792SMatthew G. Knepley } 30984ef9d792SMatthew G. Knepley 309946fa42a0SMatthew G. Knepley /*@ 31000318f8a0SStefano Zampini DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix from the coarse `DM` to a non-nested fine `DM`. 3101bd041c0cSMatthew G. Knepley 3102bd041c0cSMatthew G. Knepley Input Parameters: 3103bd041c0cSMatthew G. Knepley + dmf - The fine mesh 3104bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 3105bd041c0cSMatthew G. Knepley - user - The user context 3106bd041c0cSMatthew G. Knepley 3107bd041c0cSMatthew G. Knepley Output Parameter: 3108bd041c0cSMatthew G. Knepley . mass - The mass matrix 3109bd041c0cSMatthew G. Knepley 3110bd041c0cSMatthew G. Knepley Level: developer 3111bd041c0cSMatthew G. Knepley 31121cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 3113bd041c0cSMatthew G. Knepley @*/ 3114d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 3115d71ae5a4SJacob Faibussowitsch { 3116bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 3117bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 3118bd041c0cSMatthew G. Knepley PetscDS prob; 3119bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 3120e8f14785SLisandro Dalcin PetscHSetIJ ht; 3121bd041c0cSMatthew G. Knepley PetscLayout rLayout; 3122bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 3123bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 3124bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 3125bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 3126bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 3127bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 3128bd041c0cSMatthew G. Knepley 3129bd041c0cSMatthew G. Knepley PetscFunctionBegin; 31309566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 31319566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 31329566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 31339566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 31349566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 31359566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 31369566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 31379566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 31389566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 31399566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 31409566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd)); 31419566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 31429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 3143bd041c0cSMatthew G. Knepley 31449566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mass, &locRows, NULL)); 31459566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout)); 31469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(rLayout, locRows)); 31479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(rLayout, 1)); 31489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rLayout)); 31499566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd)); 31509566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rLayout)); 31519566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz)); 31529566063dSJacob Faibussowitsch PetscCall(PetscHSetIJCreate(&ht)); 3153bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3154bd041c0cSMatthew G. Knepley PetscObject obj; 3155bd041c0cSMatthew G. Knepley PetscClassId id; 3156bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3157bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 3158bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3159bd041c0cSMatthew G. Knepley 31609566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 31619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 31629566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 31639566063dSJacob Faibussowitsch else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 31649566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL)); 3165bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3166bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3167bd041c0cSMatthew G. Knepley Vec pointVec; 3168bd041c0cSMatthew G. Knepley PetscScalar *pV; 3169bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3170bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3171bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 3172bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3173bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3174bd041c0cSMatthew G. Knepley 31759566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 31769566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3177bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 31789566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 31799566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 31809566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3181bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3182c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3183c330f8ffSToby Isaac 3184bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3185c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3186bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3187bd041c0cSMatthew G. Knepley } 31889566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3189bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 31909566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 31919566063dSJacob Faibussowitsch PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view")); 3192bd041c0cSMatthew G. Knepley /* Update preallocation info */ 31939566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 31945f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 3195bd041c0cSMatthew G. Knepley { 3196e8f14785SLisandro Dalcin PetscHashIJKey key; 3197e8f14785SLisandro Dalcin PetscBool missing; 3198bd041c0cSMatthew G. Knepley 3199bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 3200e8f14785SLisandro Dalcin key.i = findices[i]; 3201e8f14785SLisandro Dalcin if (key.i >= 0) { 3202bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 3203bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 32049566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3205bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 3206e8f14785SLisandro Dalcin key.j = cindices[c]; 3207e8f14785SLisandro Dalcin if (key.j < 0) continue; 32089566063dSJacob Faibussowitsch PetscCall(PetscHSetIJQueryAdd(ht, key, &missing)); 3209bd041c0cSMatthew G. Knepley if (missing) { 3210e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart]; 3211e8f14785SLisandro Dalcin else ++onz[key.i - rStart]; 3212bd041c0cSMatthew G. Knepley } 3213bd041c0cSMatthew G. Knepley } 32149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3215bd041c0cSMatthew G. Knepley } 3216bd041c0cSMatthew G. Knepley } 3217bd041c0cSMatthew G. Knepley } 3218bd041c0cSMatthew G. Knepley } 32199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 32209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 32219566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3222bd041c0cSMatthew G. Knepley } 3223bd041c0cSMatthew G. Knepley } 32249566063dSJacob Faibussowitsch PetscCall(PetscHSetIJDestroy(&ht)); 32259566063dSJacob Faibussowitsch PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL)); 32269566063dSJacob Faibussowitsch PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 32279566063dSJacob Faibussowitsch PetscCall(PetscFree2(dnz, onz)); 3228bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3229bd041c0cSMatthew G. Knepley PetscObject obj; 3230bd041c0cSMatthew G. Knepley PetscClassId id; 3231ef0bb6c7SMatthew G. Knepley PetscTabulation T, Tfine; 3232bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3233bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 3234bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3235bd041c0cSMatthew G. Knepley 32369566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 32379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 3238ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 32399566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 32409566063dSJacob Faibussowitsch PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine)); 32419566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T)); 3242ef0bb6c7SMatthew G. Knepley } else { 32439566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 3244ef0bb6c7SMatthew G. Knepley } 32459566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights)); 3246bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3247bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3248bd041c0cSMatthew G. Knepley Vec pointVec; 3249bd041c0cSMatthew G. Knepley PetscScalar *pV; 3250bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3251bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3252bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 3253bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3254bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3255bd041c0cSMatthew G. Knepley 32569566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 32579566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3258bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 32599566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 32609566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 32619566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3262bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3263c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3264c330f8ffSToby Isaac 3265bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3266c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3267bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3268bd041c0cSMatthew G. Knepley } 32699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3270bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 32719566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 3272bd041c0cSMatthew G. Knepley /* Update matrix */ 32739566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 32745f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 32759566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3276bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3277bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 3278c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3279c330f8ffSToby Isaac 32809566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3281bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 32829566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3283bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 3284c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 3285bd041c0cSMatthew G. Knepley 3286bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 3287bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 3288bd041c0cSMatthew G. Knepley 3289bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 32909566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 32919566063dSJacob Faibussowitsch PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T)); 3292bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 3293bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 32949566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3295bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3296ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ; 3297bd041c0cSMatthew G. Knepley } 3298bd041c0cSMatthew G. Knepley /* Update interpolator */ 32999566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 330063a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 33019566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3302bd041c0cSMatthew G. Knepley } 3303bd041c0cSMatthew G. Knepley } else { 3304bd041c0cSMatthew G. Knepley cpdim = 1; 3305bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 33069566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3307bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3308bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ; 3309bd041c0cSMatthew G. Knepley } 3310bd041c0cSMatthew G. Knepley /* Update interpolator */ 33119566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 331263a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices)); 331363a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 33149566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3315bd041c0cSMatthew G. Knepley } 3316bd041c0cSMatthew G. Knepley } 33179566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3318bd041c0cSMatthew G. Knepley } 33199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 33209566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 33219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 33229566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3323bd041c0cSMatthew G. Knepley } 33249566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3325bd041c0cSMatthew G. Knepley } 33269566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 33279566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 33289566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 33299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY)); 33309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY)); 33313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3332bd041c0cSMatthew G. Knepley } 3333bd041c0cSMatthew G. Knepley 3334bd041c0cSMatthew G. Knepley /*@ 333546fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 333646fa42a0SMatthew G. Knepley 333746fa42a0SMatthew G. Knepley Input Parameters: 333846fa42a0SMatthew G. Knepley + dmc - The coarse mesh 333960225df5SJacob Faibussowitsch . dmf - The fine mesh 334046fa42a0SMatthew G. Knepley - user - The user context 334146fa42a0SMatthew G. Knepley 334246fa42a0SMatthew G. Knepley Output Parameter: 334346fa42a0SMatthew G. Knepley . sc - The mapping 334446fa42a0SMatthew G. Knepley 334546fa42a0SMatthew G. Knepley Level: developer 334646fa42a0SMatthew G. Knepley 33471cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 334846fa42a0SMatthew G. Knepley @*/ 3349d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 3350d71ae5a4SJacob Faibussowitsch { 3351e9d4ef1bSMatthew G. Knepley PetscDS prob; 33527c927364SMatthew G. Knepley PetscFE *feRef; 335397c42addSMatthew G. Knepley PetscFV *fvRef; 33547c927364SMatthew G. Knepley Vec fv, cv; 33557c927364SMatthew G. Knepley IS fis, cis; 33567c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 33577c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 3358485ad865SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m; 33596f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 33607c927364SMatthew G. Knepley 33617c927364SMatthew G. Knepley PetscFunctionBegin; 33629566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 33639566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 33649566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 33659566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 33669566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 33679566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 33689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 33699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 33709566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 33719566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg)); 33727c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 337397c42addSMatthew G. Knepley PetscObject obj; 337497c42addSMatthew G. Knepley PetscClassId id; 3375aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 33767c927364SMatthew G. Knepley 33779566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 33789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 337997c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 338097c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 33816f3d3cbcSMatthew G. Knepley PetscSpace sp; 33829b2fc754SMatthew G. Knepley PetscInt maxDegree; 338397c42addSMatthew G. Knepley 33849566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 33859566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &fNb)); 33869566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 33879566063dSJacob Faibussowitsch PetscCall(PetscFEGetBasisSpace(fe, &sp)); 33889566063dSJacob Faibussowitsch PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree)); 33899b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 339097c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 339197c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 339297c42addSMatthew G. Knepley PetscDualSpace Q; 339397c42addSMatthew G. Knepley 33949566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 33959566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 33969566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fNb)); 33979566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 33986f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 339997c42addSMatthew G. Knepley } 3400d172c84bSMatthew G. Knepley fTotDim += fNb; 34017c927364SMatthew G. Knepley } 34029566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &cTotDim)); 34039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cTotDim, &cmap)); 34047c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 34057c927364SMatthew G. Knepley PetscFE feC; 340697c42addSMatthew G. Knepley PetscFV fvC; 34077c927364SMatthew G. Knepley PetscDualSpace QF, QC; 3408d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 34097c927364SMatthew G. Knepley 341097c42addSMatthew G. Knepley if (feRef[field]) { 34119566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC)); 34129566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feC, &NcC)); 34139566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[field], &NcF)); 34149566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[field], &QF)); 34159566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetOrder(QF, &order)); 34169566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 34179566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feC, &QC)); 34189566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 341997c42addSMatthew G. Knepley } else { 34209566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC)); 34219566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvC, &NcC)); 34229566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF)); 34239566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[field], &QF)); 34249566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 34259566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvC, &QC)); 34269566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 342797c42addSMatthew G. Knepley } 342863a3b9bcSJacob Faibussowitsch PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC); 34297c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 34307c927364SMatthew G. Knepley PetscQuadrature cfunc; 3431d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 3432d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 343397c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 34347c927364SMatthew G. Knepley 34359566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc)); 34369566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights)); 343763a3b9bcSJacob Faibussowitsch PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC); 34381dca8a05SBarry Smith PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 34397c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 34407c927364SMatthew G. Knepley PetscQuadrature ffunc; 3441d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 34427c927364SMatthew G. Knepley PetscReal sum = 0.0; 3443d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 34447c927364SMatthew G. Knepley 34459566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc)); 34469566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights)); 344763a3b9bcSJacob Faibussowitsch PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF); 34487c927364SMatthew G. Knepley if (NpC != NpF) continue; 34497c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 34507c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 3451d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]); 3452d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 3453d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + f; 345497c42addSMatthew G. Knepley found = PETSC_TRUE; 34557c927364SMatthew G. Knepley break; 34567c927364SMatthew G. Knepley } 345797c42addSMatthew G. Knepley if (!found) { 345897c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 3459d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 3460d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + 0; 346197c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 346297c42addSMatthew G. Knepley } 34637c927364SMatthew G. Knepley } 3464d172c84bSMatthew G. Knepley offsetC += cpdim; 3465d172c84bSMatthew G. Knepley offsetF += fpdim; 34667c927364SMatthew G. Knepley } 34679371c9d4SSatish Balay for (f = 0; f < Nf; ++f) { 34689371c9d4SSatish Balay PetscCall(PetscFEDestroy(&feRef[f])); 34699371c9d4SSatish Balay PetscCall(PetscFVDestroy(&fvRef[f])); 34709371c9d4SSatish Balay } 34719566063dSJacob Faibussowitsch PetscCall(PetscFree3(feRef, fvRef, needAvg)); 34727c927364SMatthew G. Knepley 34739566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmf, &fv)); 34749566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmc, &cv)); 34759566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(cv, &startC, &endC)); 34769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m)); 34779566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices)); 34789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &cindices)); 34799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &findices)); 34807c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 34817c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 34829566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices)); 34837c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 34840bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 3485d2457c26SMatthew G. Knepley PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, c, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]); 34867c927364SMatthew G. Knepley cindices[cellCIndices[d] - startC] = cellCIndices[d]; 34877c927364SMatthew G. Knepley findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]]; 34887c927364SMatthew G. Knepley } 34897c927364SMatthew G. Knepley } 34909566063dSJacob Faibussowitsch PetscCall(PetscFree(cmap)); 34919566063dSJacob Faibussowitsch PetscCall(PetscFree2(cellCIndices, cellFIndices)); 34927c927364SMatthew G. Knepley 34939566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis)); 34949566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis)); 34959566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(cv, cis, fv, fis, sc)); 34969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cis)); 34979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fis)); 34989566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmf, &fv)); 34999566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmc, &cv)); 35009566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 35013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3502cb1e1211SMatthew G Knepley } 3503a1cf66bbSMatthew G. Knepley 35042f856554SMatthew G. Knepley /*@C 35052f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 35062f856554SMatthew G. Knepley 35072f856554SMatthew G. Knepley Input Parameters: 3508a1cb98faSBarry Smith + dm - The `DM` 35092f856554SMatthew G. Knepley . cellIS - The cells to include 35102f856554SMatthew G. Knepley . locX - A local vector with the solution fields 35112f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 35122f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 35132f856554SMatthew G. Knepley 35142f856554SMatthew G. Knepley Output Parameters: 35152f856554SMatthew G. Knepley + u - The field coefficients 35162f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 35172f856554SMatthew G. Knepley - a - The auxiliary field coefficients 35182f856554SMatthew G. Knepley 35192f856554SMatthew G. Knepley Level: developer 35202f856554SMatthew G. Knepley 35211cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 35222f856554SMatthew G. Knepley @*/ 3523d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3524d71ae5a4SJacob Faibussowitsch { 35252f856554SMatthew G. Knepley DM plex, plexA = NULL; 3526a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 35272f856554SMatthew G. Knepley PetscSection section, sectionAux; 35282f856554SMatthew G. Knepley PetscDS prob; 35292f856554SMatthew G. Knepley const PetscInt *cells; 35302f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 35312f856554SMatthew G. Knepley 35322f856554SMatthew G. Knepley PetscFunctionBegin; 35332f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3534064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 3535ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); 3536ad540459SPierre Jolivet if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); 35374f572ea9SToby Isaac PetscAssertPointer(u, 6); 35384f572ea9SToby Isaac PetscAssertPointer(u_t, 7); 35394f572ea9SToby Isaac PetscAssertPointer(a, 8); 35409566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 35419566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 35429566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 354307218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 35449566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 35452f856554SMatthew G. Knepley if (locA) { 35462f856554SMatthew G. Knepley DM dmAux; 35472f856554SMatthew G. Knepley PetscDS probAux; 35482f856554SMatthew G. Knepley 35499566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 35509566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 35519566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 35529566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 35539566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 35549566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 35552f856554SMatthew G. Knepley } 35562f856554SMatthew G. Knepley numCells = cEnd - cStart; 35579566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 35589371c9d4SSatish Balay if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 3559ad540459SPierre Jolivet else *u_t = NULL; 35609371c9d4SSatish Balay if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 3561ad540459SPierre Jolivet else *a = NULL; 35622f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 35632f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 35642f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 35652f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 35662f856554SMatthew G. Knepley PetscInt i; 35672f856554SMatthew G. Knepley 35689566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x)); 35692f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i]; 35709566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x)); 35712f856554SMatthew G. Knepley if (locX_t) { 35729566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t)); 35732f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i]; 35749566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t)); 35752f856554SMatthew G. Knepley } 35762f856554SMatthew G. Knepley if (locA) { 35772f856554SMatthew G. Knepley PetscInt subcell; 35789566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 35799566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 35802f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i]; 35819566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 35822f856554SMatthew G. Knepley } 35832f856554SMatthew G. Knepley } 35849566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 35859566063dSJacob Faibussowitsch if (locA) PetscCall(DMDestroy(&plexA)); 35869566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 35873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35882f856554SMatthew G. Knepley } 35892f856554SMatthew G. Knepley 35902f856554SMatthew G. Knepley /*@C 35912f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 35922f856554SMatthew G. Knepley 35932f856554SMatthew G. Knepley Input Parameters: 3594a1cb98faSBarry Smith + dm - The `DM` 35952f856554SMatthew G. Knepley . cellIS - The cells to include 35962f856554SMatthew G. Knepley . locX - A local vector with the solution fields 35972f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 35982f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 35992f856554SMatthew G. Knepley 36002f856554SMatthew G. Knepley Output Parameters: 36012f856554SMatthew G. Knepley + u - The field coefficients 36022f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 36032f856554SMatthew G. Knepley - a - The auxiliary field coefficients 36042f856554SMatthew G. Knepley 36052f856554SMatthew G. Knepley Level: developer 36062f856554SMatthew G. Knepley 36071cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 36082f856554SMatthew G. Knepley @*/ 3609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3610d71ae5a4SJacob Faibussowitsch { 36112f856554SMatthew G. Knepley PetscFunctionBegin; 36129566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u)); 36139566063dSJacob Faibussowitsch if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t)); 36149566063dSJacob Faibussowitsch if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a)); 36153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36162f856554SMatthew G. Knepley } 36172f856554SMatthew G. Knepley 3618a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3619d71ae5a4SJacob Faibussowitsch { 362007218a29SMatthew G. Knepley DM plex, plexA = NULL; 362107218a29SMatthew G. Knepley DMEnclosureType encAux; 362207218a29SMatthew G. Knepley PetscSection section, sectionAux; 362307218a29SMatthew G. Knepley PetscDS ds, dsIn; 36246528b96dSMatthew G. Knepley const PetscInt *cells; 362507218a29SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f; 36266528b96dSMatthew G. Knepley 36276528b96dSMatthew G. Knepley PetscFunctionBegin; 362807218a29SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 362907218a29SMatthew G. Knepley PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2); 363007218a29SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 363107218a29SMatthew G. Knepley if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); } 363207218a29SMatthew G. Knepley if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); } 36334f572ea9SToby Isaac PetscAssertPointer(u, 6); 36344f572ea9SToby Isaac PetscAssertPointer(u_t, 7); 36354f572ea9SToby Isaac PetscAssertPointer(a, 8); 363607218a29SMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 363707218a29SMatthew G. Knepley numCells = cEnd - cStart; 363807218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 363907218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dm, §ion)); 364007218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 364107218a29SMatthew G. Knepley PetscCall(PetscDSGetNumFields(dsIn, &Nf)); 364207218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDim)); 364307218a29SMatthew G. Knepley if (locA) { 364407218a29SMatthew G. Knepley DM dmAux; 364507218a29SMatthew G. Knepley PetscDS probAux; 364607218a29SMatthew G. Knepley 364707218a29SMatthew G. Knepley PetscCall(VecGetDM(locA, &dmAux)); 364807218a29SMatthew G. Knepley PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 364907218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 365007218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dmAux, §ionAux)); 365107218a29SMatthew G. Knepley PetscCall(DMGetDS(dmAux, &probAux)); 365207218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 365307218a29SMatthew G. Knepley } 365407218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 365507218a29SMatthew G. Knepley if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 365607218a29SMatthew G. Knepley else { 365707218a29SMatthew G. Knepley *u_t = NULL; 365807218a29SMatthew G. Knepley } 365907218a29SMatthew G. Knepley if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 366007218a29SMatthew G. Knepley else { 366107218a29SMatthew G. Knepley *a = NULL; 366207218a29SMatthew G. Knepley } 366307218a29SMatthew G. Knepley // Loop over cohesive cells 366407218a29SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 366507218a29SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 366607218a29SMatthew G. Knepley const PetscInt cind = c - cStart; 366774a0c561SMatthew G. Knepley PetscScalar *xf = NULL, *xc = NULL, *x = NULL, *xf_t = NULL, *xc_t = NULL; 36688e3a54c0SPierre Jolivet PetscScalar *ul = &(*u)[cind * totDim], *ul_t = PetscSafePointerPlusOffset(*u_t, cind * totDim); 366907218a29SMatthew G. Knepley const PetscInt *cone, *ornt; 367007218a29SMatthew G. Knepley PetscInt Nx = 0, Nxf, s; 367107218a29SMatthew G. Knepley 367207218a29SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cell, &cone)); 367307218a29SMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 367407218a29SMatthew G. Knepley // Put in cohesive unknowns 367507218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf)); 367674a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &xf_t)); 367707218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 367807218a29SMatthew G. Knepley PetscInt fdofIn, foff, foffIn; 367907218a29SMatthew G. Knepley PetscBool cohesive; 368007218a29SMatthew G. Knepley 368107218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive)); 368207218a29SMatthew G. Knepley if (!cohesive) continue; 368307218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn)); 368407218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff)); 368507218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn)); 368607218a29SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i]; 368774a0c561SMatthew G. Knepley if (locX_t) 368874a0c561SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + i] = xf_t[foff + i]; 368907218a29SMatthew G. Knepley Nx += fdofIn; 369007218a29SMatthew G. Knepley } 369107218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf)); 369274a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &xf_t)); 369307218a29SMatthew G. Knepley // Loop over sides of surface 369407218a29SMatthew G. Knepley for (s = 0; s < 2; ++s) { 369507218a29SMatthew G. Knepley const PetscInt *support; 369607218a29SMatthew G. Knepley const PetscInt face = cone[s]; 369707218a29SMatthew G. Knepley PetscInt ssize, ncell, Nxc; 369807218a29SMatthew G. Knepley 369907218a29SMatthew G. Knepley // I don't think I need the face to have 0 orientation in the hybrid cell 370007218a29SMatthew G. Knepley //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]); 370107218a29SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, face, &support)); 370207218a29SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, face, &ssize)); 370307218a29SMatthew G. Knepley if (support[0] == cell) ncell = support[1]; 370407218a29SMatthew G. Knepley else if (support[1] == cell) ncell = support[0]; 370507218a29SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell); 370607218a29SMatthew G. Knepley // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields 370707218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc)); 370874a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, ncell, NULL, &xc_t)); 370907218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 371007218a29SMatthew G. Knepley PetscInt fdofIn, foffIn; 371107218a29SMatthew G. Knepley PetscBool cohesive; 371207218a29SMatthew G. Knepley 371307218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive)); 371407218a29SMatthew G. Knepley if (cohesive) continue; 371507218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn)); 371607218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn)); 371707218a29SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foffIn + i]; 371874a0c561SMatthew G. Knepley if (locX_t) 371974a0c561SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + s * fdofIn + i] = xc_t[foffIn + i]; 372007218a29SMatthew G. Knepley Nx += fdofIn; 372107218a29SMatthew G. Knepley } 372207218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc)); 372374a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, ncell, NULL, &xc_t)); 372407218a29SMatthew G. Knepley } 372507218a29SMatthew G. Knepley PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim); 372607218a29SMatthew G. Knepley 372707218a29SMatthew G. Knepley if (locA) { 372807218a29SMatthew G. Knepley PetscScalar *al = &(*a)[cind * totDimAux]; 372907218a29SMatthew G. Knepley PetscInt subcell; 373007218a29SMatthew G. Knepley 373107218a29SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 373207218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x)); 373307218a29SMatthew G. Knepley PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux); 373407218a29SMatthew G. Knepley for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i]; 373507218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x)); 373607218a29SMatthew G. Knepley } 373707218a29SMatthew G. Knepley } 373807218a29SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 373907218a29SMatthew G. Knepley PetscCall(DMDestroy(&plexA)); 374007218a29SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 374107218a29SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 374207218a29SMatthew G. Knepley } 374307218a29SMatthew G. Knepley 374407218a29SMatthew G. Knepley /* 37453e2b0218SMatthew G. Knepley DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface 374607218a29SMatthew G. Knepley 374707218a29SMatthew G. Knepley Input Parameters: 374807218a29SMatthew G. Knepley + dm - The full domain DM 374907218a29SMatthew G. Knepley . dmX - An array of DM for the field, say an auxiliary DM, indexed by s 375007218a29SMatthew G. Knepley . dsX - An array of PetscDS for the field, indexed by s 375107218a29SMatthew G. Knepley . cellIS - The interface cells for which we want values 375207218a29SMatthew G. Knepley . locX - An array of local vectors with the field values, indexed by s 375307218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face 375407218a29SMatthew G. Knepley 375507218a29SMatthew G. Knepley Output Parameter: 375607218a29SMatthew G. Knepley . x - An array of field values, indexed by s 375707218a29SMatthew G. Knepley 375807218a29SMatthew G. Knepley Note: 375976fbde31SPierre Jolivet The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`. 376007218a29SMatthew G. Knepley 376107218a29SMatthew G. Knepley Level: advanced 376207218a29SMatthew G. Knepley 376376fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()` 376407218a29SMatthew G. Knepley */ 376507218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[]) 376607218a29SMatthew G. Knepley { 376707218a29SMatthew G. Knepley DM plexX[2]; 376807218a29SMatthew G. Knepley DMEnclosureType encX[2]; 376907218a29SMatthew G. Knepley PetscSection sectionX[2]; 377007218a29SMatthew G. Knepley const PetscInt *cells; 377107218a29SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, s, totDimX[2]; 377207218a29SMatthew G. Knepley 377307218a29SMatthew G. Knepley PetscFunctionBegin; 37744f572ea9SToby Isaac PetscAssertPointer(locX, 5); 377507218a29SMatthew G. Knepley if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS); 37764f572ea9SToby Isaac PetscAssertPointer(dmX, 2); 37774f572ea9SToby Isaac PetscAssertPointer(dsX, 3); 377807218a29SMatthew G. Knepley PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4); 37794f572ea9SToby Isaac PetscAssertPointer(x, 7); 37809566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 37816528b96dSMatthew G. Knepley numCells = cEnd - cStart; 3782148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 378307218a29SMatthew G. Knepley PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2); 378407218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3); 378507218a29SMatthew G. Knepley PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5); 378607218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE)); 378707218a29SMatthew G. Knepley PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s])); 378807218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dmX[s], §ionX[s])); 378907218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s])); 379007218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s])); 379104c51a94SMatthew G. Knepley } 3792148442b3SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 37936528b96dSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 37946528b96dSMatthew G. Knepley const PetscInt cind = c - cStart; 37956528b96dSMatthew G. Knepley const PetscInt *cone, *ornt; 37966528b96dSMatthew G. Knepley 37979566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 37989566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 379907218a29SMatthew G. Knepley //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]); 3800148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 380107218a29SMatthew G. Knepley const PetscInt tdX = totDimX[s]; 380207218a29SMatthew G. Knepley PetscScalar *closure = NULL, *xl = &x[s][cind * tdX]; 380307218a29SMatthew G. Knepley PetscInt face = cone[s], point = face, subpoint, Nx, i; 380407218a29SMatthew G. Knepley 380507218a29SMatthew G. Knepley if (useCell) { 38065fedec97SMatthew G. Knepley const PetscInt *support; 380707218a29SMatthew G. Knepley PetscInt ssize; 38086528b96dSMatthew G. Knepley 380907218a29SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, face, &support)); 381007218a29SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, face, &ssize)); 381107218a29SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize); 381207218a29SMatthew G. Knepley if (support[0] == cell) point = support[1]; 381307218a29SMatthew G. Knepley else if (support[1] == cell) point = support[0]; 381407218a29SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell); 381507218a29SMatthew G. Knepley } 381607218a29SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint)); 3817e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], PETSC_FALSE, locX[s], subpoint, ornt[s], &Nx, &closure)); 381807218a29SMatthew G. Knepley PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX); 381907218a29SMatthew G. Knepley for (i = 0; i < Nx; ++i) xl[i] = closure[i]; 382007218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure)); 38216528b96dSMatthew G. Knepley } 38226528b96dSMatthew G. Knepley } 382307218a29SMatthew G. Knepley for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s])); 38249566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 38253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38266528b96dSMatthew G. Knepley } 38276528b96dSMatthew G. Knepley 382807218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[]) 3829d71ae5a4SJacob Faibussowitsch { 38306528b96dSMatthew G. Knepley PetscFunctionBegin; 383107218a29SMatthew G. Knepley if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS); 383207218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0])); 383307218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1])); 38343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38356528b96dSMatthew G. Knepley } 38366528b96dSMatthew G. Knepley 38372f856554SMatthew G. Knepley /*@C 38382f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 38392f856554SMatthew G. Knepley 38402f856554SMatthew G. Knepley Input Parameters: 3841a1cb98faSBarry Smith + dm - The `DM` 38422f856554SMatthew G. Knepley . fStart - The first face to include 38432f856554SMatthew G. Knepley . fEnd - The first face to exclude 38442f856554SMatthew G. Knepley . locX - A local vector with the solution fields 38452f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 38462f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 38472f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 384860225df5SJacob Faibussowitsch - locGrad - A local vector with field gradients, or NULL 38492f856554SMatthew G. Knepley 38502f856554SMatthew G. Knepley Output Parameters: 38512f856554SMatthew G. Knepley + Nface - The number of faces with field values 38522f856554SMatthew G. Knepley . uL - The field values at the left side of the face 38532f856554SMatthew G. Knepley - uR - The field values at the right side of the face 38542f856554SMatthew G. Knepley 38552f856554SMatthew G. Knepley Level: developer 38562f856554SMatthew G. Knepley 38571cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 38582f856554SMatthew G. Knepley @*/ 3859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 3860d71ae5a4SJacob Faibussowitsch { 38612f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 38622f856554SMatthew G. Knepley PetscSection section; 38632f856554SMatthew G. Knepley PetscDS prob; 38642f856554SMatthew G. Knepley DMLabel ghostLabel; 38652f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 38662f856554SMatthew G. Knepley PetscBool *isFE; 38672f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 38682f856554SMatthew G. Knepley 38692f856554SMatthew G. Knepley PetscFunctionBegin; 38702f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38712f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 3872ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5); 38732f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 38742f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 3875ad540459SPierre Jolivet if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8); 38764f572ea9SToby Isaac PetscAssertPointer(uL, 10); 38774f572ea9SToby Isaac PetscAssertPointer(uR, 11); 38789566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 38799566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 38809566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 38819566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 38829566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(prob, &Nc)); 38839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &isFE)); 38842f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 38852f856554SMatthew G. Knepley PetscObject obj; 38862f856554SMatthew G. Knepley PetscClassId id; 38872f856554SMatthew G. Knepley 38889566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 38899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 38909371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 38919371c9d4SSatish Balay isFE[f] = PETSC_TRUE; 38929371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 38939371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 38949371c9d4SSatish Balay } else { 38959371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 38969371c9d4SSatish Balay } 38972f856554SMatthew G. Knepley } 38989566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 38999566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locX, &x)); 39009566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 39019566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 39029566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 39039566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 39042f856554SMatthew G. Knepley if (locGrad) { 39059566063dSJacob Faibussowitsch PetscCall(VecGetDM(locGrad, &dmGrad)); 39069566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 39072f856554SMatthew G. Knepley } 39089566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL)); 39099566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR)); 39102f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 39112f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 39122f856554SMatthew G. Knepley const PetscInt *cells; 39132f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 39142f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 39152f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 39162f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 39172f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 39182f856554SMatthew G. Knepley 39199566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 39209566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 39219566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 39222f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 39239566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 39249566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 39259566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 39269566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 39272f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 39282f856554SMatthew G. Knepley PetscInt off; 39292f856554SMatthew G. Knepley 39309566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffset(prob, f, &off)); 39312f856554SMatthew G. Knepley if (isFE[f]) { 39322f856554SMatthew G. Knepley const PetscInt *cone; 39332f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 39342f856554SMatthew G. Knepley 39352f856554SMatthew G. Knepley xL = xR = NULL; 39369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 39379566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 39389566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 39399566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[0], &cone)); 39409566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL)); 39419371c9d4SSatish Balay for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) 39429371c9d4SSatish Balay if (cone[faceLocL] == face) break; 39439566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[1], &cone)); 39449566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR)); 39459371c9d4SSatish Balay for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) 39469371c9d4SSatish Balay if (cone[faceLocR] == face) break; 39471dca8a05SBarry Smith PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]); 39482f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 39492f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 39502f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 39519566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off])); 39529566063dSJacob Faibussowitsch if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 39532f856554SMatthew G. Knepley else { 39549371c9d4SSatish Balay for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d]; 39559371c9d4SSatish Balay } 39569371c9d4SSatish Balay } else { 39579566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 39589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 39592f856554SMatthew G. Knepley for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d]; 39602f856554SMatthew G. Knepley } 39619566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 39629566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 39632f856554SMatthew G. Knepley } else { 39642f856554SMatthew G. Knepley PetscFV fv; 39652f856554SMatthew G. Knepley PetscInt numComp, c; 39662f856554SMatthew G. Knepley 39679566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv)); 39689566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &numComp)); 39699566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL)); 39709566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR)); 39712f856554SMatthew G. Knepley if (dmGrad) { 39722f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 39732f856554SMatthew G. Knepley 39749566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL)); 39759566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR)); 39762f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 39772f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 39782f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 39792f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL); 39802f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR); 39812f856554SMatthew G. Knepley } 39822f856554SMatthew G. Knepley } else { 39832f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 39842f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c]; 39852f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c]; 39862f856554SMatthew G. Knepley } 39872f856554SMatthew G. Knepley } 39882f856554SMatthew G. Knepley } 39892f856554SMatthew G. Knepley } 39902f856554SMatthew G. Knepley ++iface; 39912f856554SMatthew G. Knepley } 39922f856554SMatthew G. Knepley *Nface = iface; 39939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locX, &x)); 39949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 39959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 399648a46eb9SPierre Jolivet if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 39979566063dSJacob Faibussowitsch PetscCall(PetscFree(isFE)); 39983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39992f856554SMatthew G. Knepley } 40002f856554SMatthew G. Knepley 40012f856554SMatthew G. Knepley /*@C 40022f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 40032f856554SMatthew G. Knepley 40042f856554SMatthew G. Knepley Input Parameters: 4005a1cb98faSBarry Smith + dm - The `DM` 40062f856554SMatthew G. Knepley . fStart - The first face to include 40072f856554SMatthew G. Knepley . fEnd - The first face to exclude 40082f856554SMatthew G. Knepley . locX - A local vector with the solution fields 40092f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 40102f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 40112f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 401260225df5SJacob Faibussowitsch - locGrad - A local vector with field gradients, or NULL 40132f856554SMatthew G. Knepley 40142f856554SMatthew G. Knepley Output Parameters: 40152f856554SMatthew G. Knepley + Nface - The number of faces with field values 40162f856554SMatthew G. Knepley . uL - The field values at the left side of the face 40172f856554SMatthew G. Knepley - uR - The field values at the right side of the face 40182f856554SMatthew G. Knepley 40192f856554SMatthew G. Knepley Level: developer 40202f856554SMatthew G. Knepley 40211cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 40222f856554SMatthew G. Knepley @*/ 4023d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 4024d71ae5a4SJacob Faibussowitsch { 40252f856554SMatthew G. Knepley PetscFunctionBegin; 40269566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL)); 40279566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR)); 40283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 40292f856554SMatthew G. Knepley } 40302f856554SMatthew G. Knepley 40312f856554SMatthew G. Knepley /*@C 40322f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 40332f856554SMatthew G. Knepley 40342f856554SMatthew G. Knepley Input Parameters: 4035a1cb98faSBarry Smith + dm - The `DM` 40362f856554SMatthew G. Knepley . fStart - The first face to include 40372f856554SMatthew G. Knepley . fEnd - The first face to exclude 40382f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 40392f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 40402f856554SMatthew G. Knepley 40412f856554SMatthew G. Knepley Output Parameters: 40422f856554SMatthew G. Knepley + Nface - The number of faces with field values 40432f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 40442f856554SMatthew G. Knepley - vol - The cell volume 40452f856554SMatthew G. Knepley 40462f856554SMatthew G. Knepley Level: developer 40472f856554SMatthew G. Knepley 40481cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 40492f856554SMatthew G. Knepley @*/ 4050d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 4051d71ae5a4SJacob Faibussowitsch { 40522f856554SMatthew G. Knepley DM dmFace, dmCell; 40532f856554SMatthew G. Knepley DMLabel ghostLabel; 40542f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 40552f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 40562f856554SMatthew G. Knepley 40572f856554SMatthew G. Knepley PetscFunctionBegin; 40582f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40592f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 40602f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 40614f572ea9SToby Isaac PetscAssertPointer(fgeom, 7); 40624f572ea9SToby Isaac PetscAssertPointer(vol, 8); 40639566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 40649566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 40659566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 40669566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 40679566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 40689566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 40699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFaces, fgeom)); 40709566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol)); 40712f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 40722f856554SMatthew G. Knepley const PetscInt *cells; 40732f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 40742f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 40752f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 40762f856554SMatthew G. Knepley PetscReal *voll = *vol; 40772f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 40782f856554SMatthew G. Knepley 40799566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 40809566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 40819566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 40822f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 40839566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 40849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 40859566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 40869566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 40872f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 40882f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 40892f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 40902f856554SMatthew G. Knepley } 40912f856554SMatthew G. Knepley voll[iface * 2 + 0] = cgL->volume; 40922f856554SMatthew G. Knepley voll[iface * 2 + 1] = cgR->volume; 40932f856554SMatthew G. Knepley ++iface; 40942f856554SMatthew G. Knepley } 40952f856554SMatthew G. Knepley *Nface = iface; 40969566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 40979566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 40983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 40992f856554SMatthew G. Knepley } 41002f856554SMatthew G. Knepley 41012f856554SMatthew G. Knepley /*@C 41022f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 41032f856554SMatthew G. Knepley 41042f856554SMatthew G. Knepley Input Parameters: 4105a1cb98faSBarry Smith + dm - The `DM` 41062f856554SMatthew G. Knepley . fStart - The first face to include 41072f856554SMatthew G. Knepley . fEnd - The first face to exclude 41082f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 41092f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 41102f856554SMatthew G. Knepley 41112f856554SMatthew G. Knepley Output Parameters: 41122f856554SMatthew G. Knepley + Nface - The number of faces with field values 41132f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 41142f856554SMatthew G. Knepley - vol - The cell volume 41152f856554SMatthew G. Knepley 41162f856554SMatthew G. Knepley Level: developer 41172f856554SMatthew G. Knepley 41181cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 41192f856554SMatthew G. Knepley @*/ 4120d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 4121d71ae5a4SJacob Faibussowitsch { 41222f856554SMatthew G. Knepley PetscFunctionBegin; 41239566063dSJacob Faibussowitsch PetscCall(PetscFree(*fgeom)); 41249566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol)); 41253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41262f856554SMatthew G. Knepley } 41272f856554SMatthew G. Knepley 4128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 4129d71ae5a4SJacob Faibussowitsch { 4130a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 4131a1cf66bbSMatthew G. Knepley PetscObjectId id; 4132a1cf66bbSMatthew G. Knepley PetscContainer container; 4133a1cf66bbSMatthew G. Knepley 4134a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 41359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 413663a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id)); 41379566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 4138a1cf66bbSMatthew G. Knepley if (container) { 41399566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 4140a1cf66bbSMatthew G. Knepley } else { 41419566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 41429566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 41439566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 41449566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 41459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 41469566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 4147a1cf66bbSMatthew G. Knepley } 41483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4149a1cf66bbSMatthew G. Knepley } 4150a1cf66bbSMatthew G. Knepley 4151d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 4152d71ae5a4SJacob Faibussowitsch { 4153a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 4154a1cf66bbSMatthew G. Knepley *geom = NULL; 41553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4156a1cf66bbSMatthew G. Knepley } 4157a1cf66bbSMatthew G. Knepley 4158d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 4159d71ae5a4SJacob Faibussowitsch { 416092d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 416192d50984SMatthew G. Knepley const char *name = "Residual"; 416292d50984SMatthew G. Knepley DM dmAux = NULL; 416392d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 416492d50984SMatthew G. Knepley PetscDS prob = NULL; 416592d50984SMatthew G. Knepley PetscDS probAux = NULL; 416692d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 416792d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 416892d50984SMatthew G. Knepley DMField coordField = NULL; 4169c0006e53SPatrick Farrell Vec locA; 4170c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 417192d50984SMatthew G. Knepley IS chunkIS; 417292d50984SMatthew G. Knepley const PetscInt *cells; 417392d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 4174364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 417592d50984SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 417606ad1575SMatthew G. Knepley PetscFormKey key; 417792d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 417892d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 417992d50984SMatthew G. Knepley 418092d50984SMatthew G. Knepley PetscFunctionBegin; 41819566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 418292d50984SMatthew G. Knepley /* FEM+FVM */ 418392d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 41849566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 41859566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 41869566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 41879566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 41889566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 418992d50984SMatthew G. Knepley if (locA) { 41909566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 41919566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 41929566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 419392d50984SMatthew G. Knepley } 419492d50984SMatthew G. Knepley /* 2: Get geometric data */ 419592d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 419692d50984SMatthew G. Knepley PetscObject obj; 419792d50984SMatthew G. Knepley PetscClassId id; 419892d50984SMatthew G. Knepley PetscBool fimp; 419992d50984SMatthew G. Knepley 42009566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 420192d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 42029566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 42039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 4204ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 42055f80ce2aSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented"); 420692d50984SMatthew G. Knepley } 420792d50984SMatthew G. Knepley if (useFEM) { 42089566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 42099566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 421092d50984SMatthew G. Knepley if (maxDegree <= 1) { 42119566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 421248a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 421392d50984SMatthew G. Knepley } else { 42149566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 421592d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 421692d50984SMatthew G. Knepley PetscObject obj; 421792d50984SMatthew G. Knepley PetscClassId id; 421892d50984SMatthew G. Knepley PetscBool fimp; 421992d50984SMatthew G. Knepley 42209566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 422192d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 42229566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 42239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 422492d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 422592d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 422692d50984SMatthew G. Knepley 42279566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 42289566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 42299566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 423092d50984SMatthew G. Knepley } 423192d50984SMatthew G. Knepley } 423292d50984SMatthew G. Knepley } 423392d50984SMatthew G. Knepley } 423492d50984SMatthew G. Knepley /* Loop over chunks */ 42359566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 42369566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 42379566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 423892d50984SMatthew G. Knepley numCells = cEnd - cStart; 423992d50984SMatthew G. Knepley numChunks = 1; 424092d50984SMatthew G. Knepley cellChunkSize = numCells / numChunks; 424192d50984SMatthew G. Knepley numChunks = PetscMin(1, numCells); 42426528b96dSMatthew G. Knepley key.label = NULL; 42436528b96dSMatthew G. Knepley key.value = 0; 424406ad1575SMatthew G. Knepley key.part = 0; 424592d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 4246c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 4247c0006e53SPatrick Farrell PetscReal *vol = NULL; 4248c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 424992d50984SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 4250c0006e53SPatrick Farrell PetscInt numFaces = 0; 425192d50984SMatthew G. Knepley 425292d50984SMatthew G. Knepley /* Extract field coefficients */ 425392d50984SMatthew G. Knepley if (useFEM) { 42549566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 42559566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 42569566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 42579566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 425892d50984SMatthew G. Knepley } 425992d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 426092d50984SMatthew G. Knepley /* Loop over fields */ 426192d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 426292d50984SMatthew G. Knepley PetscObject obj; 426392d50984SMatthew G. Knepley PetscClassId id; 426492d50984SMatthew G. Knepley PetscBool fimp; 426592d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 426692d50984SMatthew G. Knepley 42676528b96dSMatthew G. Knepley key.field = f; 42689566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 426992d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 42709566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 42719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 427292d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 427392d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 427492d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 427592d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 427692d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 427792d50984SMatthew G. Knepley PetscInt Nq, Nb; 427892d50984SMatthew G. Knepley 42799566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 42809566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 42819566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 428292d50984SMatthew G. Knepley blockSize = Nb; 428392d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 42849566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 428592d50984SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 428692d50984SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 428792d50984SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 428892d50984SMatthew G. Knepley offset = numCells - Nr; 428992d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 429092d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 42919566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 42929566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 42939566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 42948e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim])); 42959566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 429692d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 429792d50984SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 429892d50984SMatthew G. Knepley 429992d50984SMatthew G. Knepley Ne = numFaces; 430092d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 430192d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 43029566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 430363a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 430492d50984SMatthew G. Knepley } 430592d50984SMatthew G. Knepley /* Loop over domain */ 430692d50984SMatthew G. Knepley if (useFEM) { 430792d50984SMatthew G. Knepley /* Add elemVec to locX */ 430892d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 430992d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 431092d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 431192d50984SMatthew G. Knepley 43129566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 431392d50984SMatthew G. Knepley if (ghostLabel) { 431492d50984SMatthew G. Knepley PetscInt ghostVal; 431592d50984SMatthew G. Knepley 43169566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 431792d50984SMatthew G. Knepley if (ghostVal > 0) continue; 431892d50984SMatthew G. Knepley } 43199566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 432092d50984SMatthew G. Knepley } 432192d50984SMatthew G. Knepley } 432292d50984SMatthew G. Knepley /* Handle time derivative */ 432392d50984SMatthew G. Knepley if (locX_t) { 432492d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 432592d50984SMatthew G. Knepley 43269566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 43279566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 432892d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 432992d50984SMatthew G. Knepley PetscFV fv; 433092d50984SMatthew G. Knepley PetscObject obj; 433192d50984SMatthew G. Knepley PetscClassId id; 433292d50984SMatthew G. Knepley PetscInt pdim, d; 433392d50984SMatthew G. Knepley 43349566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 43359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 433692d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 433792d50984SMatthew G. Knepley fv = (PetscFV)obj; 43389566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 433992d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 434092d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 434192d50984SMatthew G. Knepley PetscScalar *u_t, *r; 434292d50984SMatthew G. Knepley 434392d50984SMatthew G. Knepley if (ghostLabel) { 434492d50984SMatthew G. Knepley PetscInt ghostVal; 434592d50984SMatthew G. Knepley 43469566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 434792d50984SMatthew G. Knepley if (ghostVal > 0) continue; 434892d50984SMatthew G. Knepley } 43499566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 43509566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 435192d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 435292d50984SMatthew G. Knepley } 435392d50984SMatthew G. Knepley } 43549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 43559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 435692d50984SMatthew G. Knepley } 435792d50984SMatthew G. Knepley if (useFEM) { 43589566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 43599566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 436092d50984SMatthew G. Knepley } 436192d50984SMatthew G. Knepley } 43629566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 43639566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 436492d50984SMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */ 436592d50984SMatthew G. Knepley if (useFEM) { 436692d50984SMatthew G. Knepley if (maxDegree <= 1) { 43679566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 43689566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 436992d50984SMatthew G. Knepley } else { 437092d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 43719566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 43729566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 437392d50984SMatthew G. Knepley } 43749566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 437592d50984SMatthew G. Knepley } 437692d50984SMatthew G. Knepley } 43779566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 43783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 437992d50984SMatthew G. Knepley } 438092d50984SMatthew G. Knepley 4381a1cf66bbSMatthew G. Knepley /* 4382a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 4383a1cf66bbSMatthew G. Knepley 4384a1cf66bbSMatthew G. Knepley X - The local solution vector 4385a5b23f4aSJose E. Roman X_t - The local solution time derivative vector, or NULL 4386a1cf66bbSMatthew G. Knepley */ 4387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 4388d71ae5a4SJacob Faibussowitsch { 4389a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 4390a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 4391a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 4392a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 4393a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 4394a1cf66bbSMatthew G. Knepley Vec A; 4395a1cf66bbSMatthew G. Knepley DMField coordField; 4396a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 4397a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 4398a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 4399a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 4400e432b41dSStefano Zampini PetscBool hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE; 4401a1cf66bbSMatthew G. Knepley const PetscInt *cells; 440206ad1575SMatthew G. Knepley PetscFormKey key; 44039b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 4404a1cf66bbSMatthew G. Knepley 4405a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 44069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 44079566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 44089566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 44099566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 44109566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A)); 44119a2a23afSMatthew G. Knepley if (A) { 44129566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 44139566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 44149566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 4415a1cf66bbSMatthew G. Knepley } 4416a1cf66bbSMatthew G. Knepley /* Get flags */ 44179566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 44189566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 4419a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4420a1cf66bbSMatthew G. Knepley PetscObject disc; 4421a1cf66bbSMatthew G. Knepley PetscClassId id; 44229566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc)); 44239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 44249371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 44259371c9d4SSatish Balay isFE[fieldI] = PETSC_TRUE; 44269371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 44279371c9d4SSatish Balay hasFV = PETSC_TRUE; 44289371c9d4SSatish Balay isFE[fieldI] = PETSC_FALSE; 44299371c9d4SSatish Balay } 4430a1cf66bbSMatthew G. Knepley } 44319566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 44329566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 44339566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 4434a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 4435a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 44369566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */ 44379566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 44389566063dSJacob Faibussowitsch if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 4439a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 4440a1cf66bbSMatthew G. Knepley if (isFE[0]) { 4441a1cf66bbSMatthew G. Knepley PetscFE fe; 4442a1cf66bbSMatthew G. Knepley PetscQuadrature q; 4443a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 4444a1cf66bbSMatthew G. Knepley 44459566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 44469566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 44479566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL)); 44489566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 44499566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 4450a1cf66bbSMatthew G. Knepley blockSize = Nb * numQuadPoints; 4451a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 4452a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 4453a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 44549566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 4455a1cf66bbSMatthew G. Knepley } else { 4456a1cf66bbSMatthew G. Knepley chunkSize = numCells; 4457a1cf66bbSMatthew G. Knepley numChunks = 1; 4458a1cf66bbSMatthew G. Knepley } 4459a1cf66bbSMatthew G. Knepley /* Get work space */ 4460a1cf66bbSMatthew G. Knepley wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize; 44619566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work)); 44629566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(work, wsz)); 4463a1cf66bbSMatthew G. Knepley off = 0; 4464a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4465a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4466a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL; 4467a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4468a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4469a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 447063a3b9bcSJacob Faibussowitsch PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz); 4471a1cf66bbSMatthew G. Knepley /* Setup geometry */ 44729566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 44739566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 44749566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 4475a1cf66bbSMatthew G. Knepley if (!qGeom) { 4476a1cf66bbSMatthew G. Knepley PetscFE fe; 4477a1cf66bbSMatthew G. Knepley 44789566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 44799566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 44809566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 4481a1cf66bbSMatthew G. Knepley } 44829566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 4483a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 44849566063dSJacob Faibussowitsch if (assembleJac) PetscCall(MatZeroEntries(J)); 44859566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(JP)); 44866528b96dSMatthew G. Knepley key.label = NULL; 44876528b96dSMatthew G. Knepley key.value = 0; 448806ad1575SMatthew G. Knepley key.part = 0; 4489a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 4490a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 4491a1cf66bbSMatthew G. Knepley PetscInt c; 4492a1cf66bbSMatthew G. Knepley 4493a1cf66bbSMatthew G. Knepley /* Extract values */ 4494a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4495a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4496a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 4497a1cf66bbSMatthew G. Knepley PetscInt i; 4498a1cf66bbSMatthew G. Knepley 4499a1cf66bbSMatthew G. Knepley if (X) { 45009566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 4501a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 45029566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 4503a1cf66bbSMatthew G. Knepley } 4504a1cf66bbSMatthew G. Knepley if (X_t) { 45059566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 4506a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i]; 45079566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 4508a1cf66bbSMatthew G. Knepley } 4509a1cf66bbSMatthew G. Knepley if (dmAux) { 45109566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4511a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 45129566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4513a1cf66bbSMatthew G. Knepley } 4514a1cf66bbSMatthew G. Knepley } 4515a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4516a1cf66bbSMatthew G. Knepley PetscFE fe; 45179566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 4518a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 45196528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 45209566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat)); 45219566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP)); 45229566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD)); 4523a1cf66bbSMatthew G. Knepley } 4524a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 4525a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 4526a1cf66bbSMatthew G. Knepley PetscFV fv; 4527a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 4528a1cf66bbSMatthew G. Knepley 45299566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff)); 45309566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 45319566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 4532a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) { 4533a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 4534a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 4535ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 4536ad540459SPierre Jolivet if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0; 4537a1cf66bbSMatthew G. Knepley } 4538a1cf66bbSMatthew G. Knepley } 4539a1cf66bbSMatthew G. Knepley } 4540a1cf66bbSMatthew G. Knepley } 4541a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 45429371c9d4SSatish Balay if (hasDyn) { 45439371c9d4SSatish Balay for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 45449371c9d4SSatish Balay } 4545a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 4546a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4547a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4548a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 45499566063dSJacob Faibussowitsch if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim])); 45509566063dSJacob Faibussowitsch if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim])); 4551a1cf66bbSMatthew G. Knepley } 4552e8e188d2SZach Atkins if (assembleJac) PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 4553e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 4554a1cf66bbSMatthew G. Knepley } 4555a1cf66bbSMatthew G. Knepley } 4556a1cf66bbSMatthew G. Knepley /* Cleanup */ 45579566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 45589566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 45599566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 45609566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 45619566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work)); 4562a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 45639566063dSJacob Faibussowitsch /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */ 4564a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 45659371c9d4SSatish Balay if (assembleJac) { 45669371c9d4SSatish Balay PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 45679371c9d4SSatish Balay PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 45689371c9d4SSatish Balay } 45699371c9d4SSatish Balay PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 45709371c9d4SSatish Balay PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 45719566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 45723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4573a1cf66bbSMatthew G. Knepley } 45743e9753d6SMatthew G. Knepley 45753e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/ 45763e9753d6SMatthew G. Knepley 4577d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy) 4578d71ae5a4SJacob Faibussowitsch { 45793e9753d6SMatthew G. Knepley PetscBool isPlex; 45803e9753d6SMatthew G. Knepley 45813e9753d6SMatthew G. Knepley PetscFunctionBegin; 45829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 45833e9753d6SMatthew G. Knepley if (isPlex) { 45843e9753d6SMatthew G. Knepley *plex = dm; 45859566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 45863e9753d6SMatthew G. Knepley } else { 45879566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 45883e9753d6SMatthew G. Knepley if (!*plex) { 45899566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 45909566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 45913e9753d6SMatthew G. Knepley } else { 45929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 45933e9753d6SMatthew G. Knepley } 4594cbf8eb3cSStefano Zampini if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 45953e9753d6SMatthew G. Knepley } 45963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45973e9753d6SMatthew G. Knepley } 45983e9753d6SMatthew G. Knepley 45993e9753d6SMatthew G. Knepley /*@ 46003e9753d6SMatthew G. Knepley DMPlexGetGeometryFVM - Return precomputed geometric data 46013e9753d6SMatthew G. Knepley 460220f4b53cSBarry Smith Collective 46033e9753d6SMatthew G. Knepley 46043e9753d6SMatthew G. Knepley Input Parameter: 4605a1cb98faSBarry Smith . dm - The `DM` 46063e9753d6SMatthew G. Knepley 46073e9753d6SMatthew G. Knepley Output Parameters: 46083e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry 46093e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry 46103e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell 46113e9753d6SMatthew G. Knepley 46123e9753d6SMatthew G. Knepley Level: developer 46133e9753d6SMatthew G. Knepley 46141cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()` 46153e9753d6SMatthew G. Knepley @*/ 4616d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius) 4617d71ae5a4SJacob Faibussowitsch { 46183e9753d6SMatthew G. Knepley DM plex; 46193e9753d6SMatthew G. Knepley 46203e9753d6SMatthew G. Knepley PetscFunctionBegin; 46213e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46229566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 46239566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL)); 46249566063dSJacob Faibussowitsch if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius)); 46259566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 46263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46273e9753d6SMatthew G. Knepley } 46283e9753d6SMatthew G. Knepley 46293e9753d6SMatthew G. Knepley /*@ 46303e9753d6SMatthew G. Knepley DMPlexGetGradientDM - Return gradient data layout 46313e9753d6SMatthew G. Knepley 463220f4b53cSBarry Smith Collective 46333e9753d6SMatthew G. Knepley 46343e9753d6SMatthew G. Knepley Input Parameters: 4635a1cb98faSBarry Smith + dm - The `DM` 463620f4b53cSBarry Smith - fv - The `PetscFV` 46373e9753d6SMatthew G. Knepley 46383e9753d6SMatthew G. Knepley Output Parameter: 46393e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values 46403e9753d6SMatthew G. Knepley 46413e9753d6SMatthew G. Knepley Level: developer 46423e9753d6SMatthew G. Knepley 46431cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()` 46443e9753d6SMatthew G. Knepley @*/ 4645d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad) 4646d71ae5a4SJacob Faibussowitsch { 46473e9753d6SMatthew G. Knepley DM plex; 46483e9753d6SMatthew G. Knepley PetscBool computeGradients; 46493e9753d6SMatthew G. Knepley 46503e9753d6SMatthew G. Knepley PetscFunctionBegin; 46513e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46523e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2); 46534f572ea9SToby Isaac PetscAssertPointer(dmGrad, 3); 46549566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &computeGradients)); 46559371c9d4SSatish Balay if (!computeGradients) { 46569371c9d4SSatish Balay *dmGrad = NULL; 46573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46589371c9d4SSatish Balay } 46599566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 46609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad)); 46619566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 46623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46633e9753d6SMatthew G. Knepley } 46643e9753d6SMatthew G. Knepley 4665d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS) 4666d71ae5a4SJacob Faibussowitsch { 46673e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 46683e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL; 4669*673019faSMatthew G. Knepley const char *name = "BdResidual"; 46703e9753d6SMatthew G. Knepley DMEnclosureType encAux; 46713e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 46723e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 46733e9753d6SMatthew G. Knepley Vec locA = NULL; 46743e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL; 46753e9753d6SMatthew G. Knepley PetscInt totDim, totDimAux = 0; 46763e9753d6SMatthew G. Knepley 46773e9753d6SMatthew G. Knepley PetscFunctionBegin; 46789566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 46799566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 46809566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 46819566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 46829566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 46833e9753d6SMatthew G. Knepley if (locA) { 46843e9753d6SMatthew G. Knepley DM dmAux; 46853e9753d6SMatthew G. Knepley 46869566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 46879566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 46889566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 46899566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 46909566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 46919566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 46923e9753d6SMatthew G. Knepley } 46930c290148SMatthew G. Knepley { 46943e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 46953e9753d6SMatthew G. Knepley PetscInt maxDegree; 46963e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 46973e9753d6SMatthew G. Knepley IS pointIS; 46983e9753d6SMatthew G. Knepley const PetscInt *points; 46993e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 47003e9753d6SMatthew G. Knepley 47019566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 47020c290148SMatthew G. Knepley if (!pointIS) goto end; /* No points with that id on this process */ 47033e9753d6SMatthew G. Knepley { 47043e9753d6SMatthew G. Knepley IS isectIS; 47053e9753d6SMatthew G. Knepley 47063e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 47079566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 47089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 47093e9753d6SMatthew G. Knepley pointIS = isectIS; 47103e9753d6SMatthew G. Knepley } 47119566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 47129566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 47139566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a)); 47149566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 471548a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 47163e9753d6SMatthew G. Knepley if (!qGeom) { 47173e9753d6SMatthew G. Knepley PetscFE fe; 47183e9753d6SMatthew G. Knepley 47199566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 47209566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 47219566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 47223e9753d6SMatthew G. Knepley } 47239566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 47249566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 47253e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 4726f15274beSMatthew Knepley const PetscInt point = points[face], *support; 47273e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 4728f15274beSMatthew Knepley PetscInt i; 47293e9753d6SMatthew G. Knepley 47309566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 47319566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 47323e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 47339566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 47343e9753d6SMatthew G. Knepley if (locX_t) { 47359566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 47363e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 47379566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 47383e9753d6SMatthew G. Knepley } 47393e9753d6SMatthew G. Knepley if (locA) { 47403e9753d6SMatthew G. Knepley PetscInt subp; 47413e9753d6SMatthew G. Knepley 47429566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 47439566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 47443e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 47459566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 47463e9753d6SMatthew G. Knepley } 47473e9753d6SMatthew G. Knepley } 47489566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numFaces * totDim)); 47493e9753d6SMatthew G. Knepley { 47503e9753d6SMatthew G. Knepley PetscFE fe; 47513e9753d6SMatthew G. Knepley PetscInt Nb; 47523e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 47533e9753d6SMatthew G. Knepley /* Conforming batches */ 47543e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 47553e9753d6SMatthew G. Knepley /* Remainder */ 47563e9753d6SMatthew G. Knepley PetscInt Nr, offset; 47573e9753d6SMatthew G. Knepley 47589566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 47599566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 47609566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 47613e9753d6SMatthew G. Knepley /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */ 47623e9753d6SMatthew G. Knepley blockSize = Nb; 47633e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 47649566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 47653e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 47663e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 47673e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 47683e9753d6SMatthew G. Knepley offset = numFaces - Nr; 47699566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 47709566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 47719566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 47729566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 47738e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim])); 47749566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 47753e9753d6SMatthew G. Knepley } 47763e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 47773e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 47783e9753d6SMatthew G. Knepley 4779*673019faSMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, name, totDim, &elemVec[face * totDim])); 47809566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 47819566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES)); 47823e9753d6SMatthew G. Knepley } 47839566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 47849566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 47859566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 47869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 47879566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemVec, a)); 47883e9753d6SMatthew G. Knepley } 47890c290148SMatthew G. Knepley end: 4790*673019faSMatthew G. Knepley if (mesh->printFEM) { 4791*673019faSMatthew G. Knepley PetscSection s; 4792*673019faSMatthew G. Knepley Vec locFbc; 4793*673019faSMatthew G. Knepley PetscInt pStart, pEnd, maxDof; 4794*673019faSMatthew G. Knepley PetscScalar *zeroes; 4795*673019faSMatthew G. Knepley 4796*673019faSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 4797*673019faSMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 4798*673019faSMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 4799*673019faSMatthew G. Knepley PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 4800*673019faSMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(s, &maxDof)); 4801*673019faSMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 4802*673019faSMatthew G. Knepley for (PetscInt p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, s, p, zeroes, INSERT_BC_VALUES)); 4803*673019faSMatthew G. Knepley PetscCall(PetscFree(zeroes)); 4804*673019faSMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 4805*673019faSMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 4806*673019faSMatthew G. Knepley } 48079566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 48089566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 48093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48103e9753d6SMatthew G. Knepley } 48113e9753d6SMatthew G. Knepley 4812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF) 4813d71ae5a4SJacob Faibussowitsch { 48143e9753d6SMatthew G. Knepley DMField coordField; 48153e9753d6SMatthew G. Knepley DMLabel depthLabel; 48163e9753d6SMatthew G. Knepley IS facetIS; 48173e9753d6SMatthew G. Knepley PetscInt dim; 48183e9753d6SMatthew G. Knepley 48193e9753d6SMatthew G. Knepley PetscFunctionBegin; 48209566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 48219566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 48229566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 48239566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 48249566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 48259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 48263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48273e9753d6SMatthew G. Knepley } 48283e9753d6SMatthew G. Knepley 4829a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4830d71ae5a4SJacob Faibussowitsch { 48313e9753d6SMatthew G. Knepley PetscDS prob; 48323e9753d6SMatthew G. Knepley PetscInt numBd, bd; 48333e9753d6SMatthew G. Knepley DMField coordField = NULL; 48343e9753d6SMatthew G. Knepley IS facetIS = NULL; 48353e9753d6SMatthew G. Knepley DMLabel depthLabel; 48363e9753d6SMatthew G. Knepley PetscInt dim; 48373e9753d6SMatthew G. Knepley 48383e9753d6SMatthew G. Knepley PetscFunctionBegin; 48399566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 48409566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 48419566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 48429566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 48439566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 48443e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 484545480ffeSMatthew G. Knepley PetscWeakForm wf; 48463e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 48473e9753d6SMatthew G. Knepley DMLabel label; 48483e9753d6SMatthew G. Knepley const PetscInt *values; 48490c290148SMatthew G. Knepley PetscInt field, numValues, v; 48503e9753d6SMatthew G. Knepley PetscObject obj; 48513e9753d6SMatthew G. Knepley PetscClassId id; 48520c290148SMatthew G. Knepley PetscFormKey key; 48533e9753d6SMatthew G. Knepley 48549566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL)); 48553d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 48569566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 48579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 48583d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 48593e9753d6SMatthew G. Knepley if (!facetIS) { 48603e9753d6SMatthew G. Knepley DMLabel depthLabel; 48613e9753d6SMatthew G. Knepley PetscInt dim; 48623e9753d6SMatthew G. Knepley 48639566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 48649566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 48659566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 48663e9753d6SMatthew G. Knepley } 48679566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 48680c290148SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 48690c290148SMatthew G. Knepley key.label = label; 48700c290148SMatthew G. Knepley key.value = values[v]; 48710c290148SMatthew G. Knepley key.field = field; 48720c290148SMatthew G. Knepley key.part = 0; 48739566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 48740c290148SMatthew G. Knepley } 48753e9753d6SMatthew G. Knepley } 48769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 48773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48783e9753d6SMatthew G. Knepley } 48793e9753d6SMatthew G. Knepley 4880d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4881d71ae5a4SJacob Faibussowitsch { 48823e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 48833e9753d6SMatthew G. Knepley const char *name = "Residual"; 48843e9753d6SMatthew G. Knepley DM dmAux = NULL; 48853e9753d6SMatthew G. Knepley DM dmGrad = NULL; 48863e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 48876528b96dSMatthew G. Knepley PetscDS ds = NULL; 48886528b96dSMatthew G. Knepley PetscDS dsAux = NULL; 48893e9753d6SMatthew G. Knepley PetscSection section = NULL; 48903e9753d6SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 48913e9753d6SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 48923e9753d6SMatthew G. Knepley PetscBool isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 48933e9753d6SMatthew G. Knepley PetscFV fvm = NULL; 48943e9753d6SMatthew G. Knepley DMField coordField = NULL; 48955962854dSMatthew G. Knepley Vec locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 48963e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a, *uL, *uR; 48973e9753d6SMatthew G. Knepley IS chunkIS; 48983e9753d6SMatthew G. Knepley const PetscInt *cells; 48993e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 49003e9753d6SMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd; 49013e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 49023e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 49033e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 49043e9753d6SMatthew G. Knepley 49053e9753d6SMatthew G. Knepley PetscFunctionBegin; 49069566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 49073cc88e6aSStefano Zampini if (!cellIS) goto end; 49083cc88e6aSStefano Zampini PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 49093cc88e6aSStefano Zampini if (cStart >= cEnd) goto end; 49103e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 49113e9753d6SMatthew G. Knepley /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */ 49123e9753d6SMatthew G. Knepley /* FEM+FVM */ 49139566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 49143e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 49159566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 49169566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 491707218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL)); 49189566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 49199566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 49209566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 49213e9753d6SMatthew G. Knepley if (locA) { 49223e9753d6SMatthew G. Knepley PetscInt subcell; 49239566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 49241059d808SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell)); 492507218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL)); 49269566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 49273e9753d6SMatthew G. Knepley } 49283e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 49293e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49303e9753d6SMatthew G. Knepley PetscObject obj; 49313e9753d6SMatthew G. Knepley PetscClassId id; 49323e9753d6SMatthew G. Knepley PetscBool fimp; 49333e9753d6SMatthew G. Knepley 49349566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 49353e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 49369566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 49379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 4938ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 49399371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 49409371c9d4SSatish Balay useFVM = PETSC_TRUE; 49419371c9d4SSatish Balay fvm = (PetscFV)obj; 49429371c9d4SSatish Balay } 49433e9753d6SMatthew G. Knepley } 49443e9753d6SMatthew G. Knepley if (useFEM) { 49459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 49469566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 49473e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 49489566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 494948a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 49503e9753d6SMatthew G. Knepley } else { 49519566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 49523e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49533e9753d6SMatthew G. Knepley PetscObject obj; 49543e9753d6SMatthew G. Knepley PetscClassId id; 49553e9753d6SMatthew G. Knepley PetscBool fimp; 49563e9753d6SMatthew G. Knepley 49579566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 49583e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 49599566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 49609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 49613e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 49623e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 49633e9753d6SMatthew G. Knepley 49649566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 49659566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 49669566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 49673e9753d6SMatthew G. Knepley } 49683e9753d6SMatthew G. Knepley } 49693e9753d6SMatthew G. Knepley } 49703e9753d6SMatthew G. Knepley } 49715962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values 49723e9753d6SMatthew G. Knepley if (useFVM) { 49735962854dSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValuesFVM(dm, fvm, locX, time, &locGrad)); 49749566063dSJacob Faibussowitsch PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 49759566063dSJacob Faibussowitsch PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad)); 49763e9753d6SMatthew G. Knepley } 49773e9753d6SMatthew G. Knepley /* Loop over chunks */ 49789566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 49793e9753d6SMatthew G. Knepley numCells = cEnd - cStart; 49803e9753d6SMatthew G. Knepley numChunks = 1; 49813e9753d6SMatthew G. Knepley cellChunkSize = numCells / numChunks; 49823e9753d6SMatthew G. Knepley faceChunkSize = (fEnd - fStart) / numChunks; 49833e9753d6SMatthew G. Knepley numChunks = PetscMin(1, numCells); 49843e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 49853e9753d6SMatthew G. Knepley PetscScalar *elemVec, *fluxL, *fluxR; 49863e9753d6SMatthew G. Knepley PetscReal *vol; 49873e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeom; 49883e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 49893e9753d6SMatthew G. Knepley PetscInt fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face; 49903e9753d6SMatthew G. Knepley 49913e9753d6SMatthew G. Knepley /* Extract field coefficients */ 49923e9753d6SMatthew G. Knepley if (useFEM) { 49939566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 49949566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 49959566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 49969566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 49973e9753d6SMatthew G. Knepley } 49983e9753d6SMatthew G. Knepley if (useFVM) { 49999566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 50009566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 50019566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 50029566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 50039566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxL, numFaces * totDim)); 50049566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxR, numFaces * totDim)); 50053e9753d6SMatthew G. Knepley } 50063e9753d6SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 50073e9753d6SMatthew G. Knepley /* Loop over fields */ 50083e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50093e9753d6SMatthew G. Knepley PetscObject obj; 50103e9753d6SMatthew G. Knepley PetscClassId id; 50113e9753d6SMatthew G. Knepley PetscBool fimp; 50123e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 50133e9753d6SMatthew G. Knepley 50146528b96dSMatthew G. Knepley key.field = f; 50159566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 50163e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 50179566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 50189566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 50193e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 50203e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 50213e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 50223e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 50233e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 50243e9753d6SMatthew G. Knepley PetscInt Nq, Nb; 50253e9753d6SMatthew G. Knepley 50269566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 50279566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 50289566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 50293e9753d6SMatthew G. Knepley blockSize = Nb; 50303e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 50319566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 50323e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 50333e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 50343e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 50353e9753d6SMatthew G. Knepley offset = numCells - Nr; 50363e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 50373e9753d6SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 50389566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 50399566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec)); 50409566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 50418e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim])); 50429566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 50433e9753d6SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 50443e9753d6SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 50453e9753d6SMatthew G. Knepley 50463e9753d6SMatthew G. Knepley Ne = numFaces; 50473e9753d6SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 50483e9753d6SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 50499566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 505063a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 50513e9753d6SMatthew G. Knepley } 50523e9753d6SMatthew G. Knepley /* Loop over domain */ 50533e9753d6SMatthew G. Knepley if (useFEM) { 50543e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 50553e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 50563e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 50573e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 50583e9753d6SMatthew G. Knepley 50599566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 50603e9753d6SMatthew G. Knepley if (ghostLabel) { 50613e9753d6SMatthew G. Knepley PetscInt ghostVal; 50623e9753d6SMatthew G. Knepley 50639566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 50643e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 50653e9753d6SMatthew G. Knepley } 50669566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 50673e9753d6SMatthew G. Knepley } 50683e9753d6SMatthew G. Knepley } 50693e9753d6SMatthew G. Knepley if (useFVM) { 50703e9753d6SMatthew G. Knepley PetscScalar *fa; 50713e9753d6SMatthew G. Knepley PetscInt iface; 50723e9753d6SMatthew G. Knepley 50739566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 50743e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50753e9753d6SMatthew G. Knepley PetscFV fv; 50763e9753d6SMatthew G. Knepley PetscObject obj; 50773e9753d6SMatthew G. Knepley PetscClassId id; 50785962854dSMatthew G. Knepley PetscInt cdim, foff, pdim; 50793e9753d6SMatthew G. Knepley 50805962854dSMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 50819566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 50829566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(ds, f, &foff)); 50839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 50843e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 50853e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 50869566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 50873e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 50883e9753d6SMatthew G. Knepley for (face = fS, iface = 0; face < fE; ++face) { 50893e9753d6SMatthew G. Knepley const PetscInt *scells; 50903e9753d6SMatthew G. Knepley PetscScalar *fL = NULL, *fR = NULL; 50913e9753d6SMatthew G. Knepley PetscInt ghost, d, nsupp, nchild; 50923e9753d6SMatthew G. Knepley 50939566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 50949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 50959566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 50963e9753d6SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 50979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &scells)); 50989566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost)); 50999566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL)); 51009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost)); 51019566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR)); 51025962854dSMatthew G. Knepley if (mesh->printFVM > 1) { 51035962854dSMatthew G. Knepley PetscCall(DMPrintCellVectorReal(face, "Residual: normal", cdim, fgeom[iface].normal)); 51045962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: left state", pdim, &uL[iface * totDim + foff])); 51055962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: right state", pdim, &uR[iface * totDim + foff])); 51065962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: left flux", pdim, &fluxL[iface * totDim + foff])); 51075962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: right flux", pdim, &fluxR[iface * totDim + foff])); 51085962854dSMatthew G. Knepley } 51093e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) { 51103e9753d6SMatthew G. Knepley if (fL) fL[d] -= fluxL[iface * totDim + foff + d]; 51113e9753d6SMatthew G. Knepley if (fR) fR[d] += fluxR[iface * totDim + foff + d]; 51123e9753d6SMatthew G. Knepley } 51133e9753d6SMatthew G. Knepley ++iface; 51143e9753d6SMatthew G. Knepley } 51153e9753d6SMatthew G. Knepley } 51169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 51173e9753d6SMatthew G. Knepley } 51183e9753d6SMatthew G. Knepley /* Handle time derivative */ 51193e9753d6SMatthew G. Knepley if (locX_t) { 51203e9753d6SMatthew G. Knepley PetscScalar *x_t, *fa; 51213e9753d6SMatthew G. Knepley 51229566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 51239566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 51243e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 51253e9753d6SMatthew G. Knepley PetscFV fv; 51263e9753d6SMatthew G. Knepley PetscObject obj; 51273e9753d6SMatthew G. Knepley PetscClassId id; 51283e9753d6SMatthew G. Knepley PetscInt pdim, d; 51293e9753d6SMatthew G. Knepley 51309566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 51319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 51323e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 51333e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 51349566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 51353e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 51363e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 51373e9753d6SMatthew G. Knepley PetscScalar *u_t, *r; 51383e9753d6SMatthew G. Knepley 51393e9753d6SMatthew G. Knepley if (ghostLabel) { 51403e9753d6SMatthew G. Knepley PetscInt ghostVal; 51413e9753d6SMatthew G. Knepley 51429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 51433e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 51443e9753d6SMatthew G. Knepley } 51459566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 51469566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 51473e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 51483e9753d6SMatthew G. Knepley } 51493e9753d6SMatthew G. Knepley } 51509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 51519566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 51523e9753d6SMatthew G. Knepley } 51533e9753d6SMatthew G. Knepley if (useFEM) { 51549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 51559566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 51563e9753d6SMatthew G. Knepley } 51573e9753d6SMatthew G. Knepley if (useFVM) { 51589566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 51599566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 51609566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 51619566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 51629566063dSJacob Faibussowitsch if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 51633e9753d6SMatthew G. Knepley } 51643e9753d6SMatthew G. Knepley } 51659566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 51669566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 51673e9753d6SMatthew G. Knepley 51683e9753d6SMatthew G. Knepley if (useFEM) { 51699566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user)); 51703e9753d6SMatthew G. Knepley 51713e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 51729566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 51739566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 51743e9753d6SMatthew G. Knepley } else { 51753e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 51769566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 51779566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 51783e9753d6SMatthew G. Knepley } 51799566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 51803e9753d6SMatthew G. Knepley } 51813e9753d6SMatthew G. Knepley } 51823e9753d6SMatthew G. Knepley 51833e9753d6SMatthew G. Knepley /* FEM */ 51843e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 51853e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 51863e9753d6SMatthew G. Knepley /* 3: Handle boundary values */ 51873e9753d6SMatthew G. Knepley /* 4: Loop over domain */ 51883e9753d6SMatthew G. Knepley /* Extract coefficients */ 51893e9753d6SMatthew G. Knepley /* Loop over fields */ 51903e9753d6SMatthew G. Knepley /* Set tiling for FE*/ 51913e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec */ 51923e9753d6SMatthew G. Knepley /* Loop over subdomain */ 51933e9753d6SMatthew G. Knepley /* Loop over quad points */ 51943e9753d6SMatthew G. Knepley /* Transform coords to real space */ 51953e9753d6SMatthew G. Knepley /* Evaluate field and aux fields at point */ 51963e9753d6SMatthew G. Knepley /* Evaluate residual at point */ 51973e9753d6SMatthew G. Knepley /* Transform residual to real space */ 51983e9753d6SMatthew G. Knepley /* Add residual to elemVec */ 51993e9753d6SMatthew G. Knepley /* Loop over domain */ 52003e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 52013e9753d6SMatthew G. Knepley 52023e9753d6SMatthew G. Knepley /* FVM */ 52033e9753d6SMatthew G. Knepley /* Get geometric data */ 52043e9753d6SMatthew G. Knepley /* If using gradients */ 52053e9753d6SMatthew G. Knepley /* Compute gradient data */ 52063e9753d6SMatthew G. Knepley /* Loop over domain faces */ 52073e9753d6SMatthew G. Knepley /* Count computational faces */ 52083e9753d6SMatthew G. Knepley /* Reconstruct cell gradient */ 52093e9753d6SMatthew G. Knepley /* Loop over domain cells */ 52103e9753d6SMatthew G. Knepley /* Limit cell gradients */ 52113e9753d6SMatthew G. Knepley /* Handle boundary values */ 52123e9753d6SMatthew G. Knepley /* Loop over domain faces */ 52133e9753d6SMatthew G. Knepley /* Read out field, centroid, normal, volume for each side of face */ 52143e9753d6SMatthew G. Knepley /* Riemann solve over faces */ 52153e9753d6SMatthew G. Knepley /* Loop over domain faces */ 52163e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 52173e9753d6SMatthew G. Knepley /* TODO Change printFEM to printDisc here */ 52183e9753d6SMatthew G. Knepley if (mesh->printFEM) { 52193e9753d6SMatthew G. Knepley Vec locFbc; 52203e9753d6SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 52213e9753d6SMatthew G. Knepley PetscScalar *zeroes; 52223e9753d6SMatthew G. Knepley 52239566063dSJacob Faibussowitsch PetscCall(VecDuplicate(locF, &locFbc)); 52249566063dSJacob Faibussowitsch PetscCall(VecCopy(locF, locFbc)); 52259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 52269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 52279566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(maxDof, &zeroes)); 522848a46eb9SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 52299566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroes)); 52309566063dSJacob Faibussowitsch PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 52319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&locFbc)); 52323e9753d6SMatthew G. Knepley } 52333cc88e6aSStefano Zampini end: 52349566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 52353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52363e9753d6SMatthew G. Knepley } 52373e9753d6SMatthew G. Knepley 52386528b96dSMatthew G. Knepley /* 52396528b96dSMatthew G. Knepley 1) Allow multiple kernels for BdResidual for hybrid DS 52406528b96dSMatthew G. Knepley 52416528b96dSMatthew G. Knepley DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux 52426528b96dSMatthew G. Knepley 52436528b96dSMatthew G. Knepley DONE 3) Change DMGetCellFields() to get different aux data a[] for each side 52446528b96dSMatthew G. Knepley - I think I just need to replace a[] with the closure from each face 52456528b96dSMatthew G. Knepley 52466528b96dSMatthew G. Knepley 4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before 52476528b96dSMatthew G. Knepley */ 5248d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 5249d71ae5a4SJacob Faibussowitsch { 52503e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 52513e9753d6SMatthew G. Knepley const char *name = "Hybrid Residual"; 525204c51a94SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 52533e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 52546528b96dSMatthew G. Knepley PetscDS ds = NULL; 525507218a29SMatthew G. Knepley PetscDS dsIn = NULL; 52566528b96dSMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 525704c51a94SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 525807218a29SMatthew G. Knepley DM dmScale[3] = {NULL, NULL, NULL}; 525907218a29SMatthew G. Knepley PetscDS dsScale[3] = {NULL, NULL, NULL}; 526007218a29SMatthew G. Knepley Vec locS[3] = {NULL, NULL, NULL}; 52613e9753d6SMatthew G. Knepley PetscSection section = NULL; 52623e9753d6SMatthew G. Knepley DMField coordField = NULL; 526307218a29SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 526407218a29SMatthew G. Knepley PetscScalar *s[3] = {NULL, NULL, NULL}; 5265b2ab40e6SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 526607218a29SMatthew G. Knepley PetscScalar *elemVecNeg, *elemVecPos, *elemVecCoh; 52673e9753d6SMatthew G. Knepley IS chunkIS; 52683e9753d6SMatthew G. Knepley const PetscInt *cells; 52693e9753d6SMatthew G. Knepley PetscInt *faces; 52703e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 52713e2b0218SMatthew G. Knepley PetscInt Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk; 52723e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 52733e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 52743e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 52753e9753d6SMatthew G. Knepley 52763e9753d6SMatthew G. Knepley PetscFunctionBegin; 52773cc88e6aSStefano Zampini PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 52783cc88e6aSStefano Zampini if (!cellIS) goto end; 5279437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5280437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 52813cc88e6aSStefano Zampini if (cStart >= cEnd) goto end; 52825fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 52835fedec97SMatthew G. Knepley const char *name; 52849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 528563a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 52865fedec97SMatthew G. Knepley } 52873e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 52883e9753d6SMatthew G. Knepley /* FEM */ 52893e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 52909566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 52919566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 529207218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 52939566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 52949566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 529507218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn)); 52969566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 529704c51a94SMatthew G. Knepley if (locA[2]) { 52981059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 52991059d808SMatthew G. Knepley 53009566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 530107218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL)); 53029566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 53036528b96dSMatthew G. Knepley { 53046528b96dSMatthew G. Knepley const PetscInt *cone; 53056528b96dSMatthew G. Knepley PetscInt c; 53066528b96dSMatthew G. Knepley 53071059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 53086528b96dSMatthew G. Knepley for (c = 0; c < 2; ++c) { 53096528b96dSMatthew G. Knepley const PetscInt *support; 53106528b96dSMatthew G. Knepley PetscInt ssize, s; 53116528b96dSMatthew G. Knepley 53129566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 53139566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 53141059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 53151059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 53161059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 53171059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 53189566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 5319c75bfeddSPierre Jolivet PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part); 53209566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 5321ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 532207218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL)); 53239566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 53246528b96dSMatthew G. Knepley } 53256528b96dSMatthew G. Knepley } 53263e9753d6SMatthew G. Knepley } 532707218a29SMatthew G. Knepley /* Handle mass matrix scaling 532807218a29SMatthew G. Knepley The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */ 532907218a29SMatthew G. Knepley PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2])); 533007218a29SMatthew G. Knepley if (locS[2]) { 53313e2b0218SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 533207218a29SMatthew G. Knepley PetscInt Nb, Nbs; 533307218a29SMatthew G. Knepley 533407218a29SMatthew G. Knepley PetscCall(VecGetDM(locS[2], &dmScale[2])); 53353e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL)); 53363e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2])); 533707218a29SMatthew G. Knepley // BRAD: This is not set correctly 533807218a29SMatthew G. Knepley key[2].field = 2; 533907218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb)); 534007218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs)); 534107218a29SMatthew G. Knepley PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs); 53423e2b0218SMatthew G. Knepley { 53433e2b0218SMatthew G. Knepley const PetscInt *cone; 53443e2b0218SMatthew G. Knepley PetscInt c; 53453e2b0218SMatthew G. Knepley 53463e2b0218SMatthew G. Knepley locS[1] = locS[0] = locS[2]; 53473e2b0218SMatthew G. Knepley dmScale[1] = dmScale[0] = dmScale[2]; 53483e2b0218SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 53493e2b0218SMatthew G. Knepley for (c = 0; c < 2; ++c) { 53503e2b0218SMatthew G. Knepley const PetscInt *support; 53513e2b0218SMatthew G. Knepley PetscInt ssize, s; 53523e2b0218SMatthew G. Knepley 53533e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 53543e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 53553e2b0218SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 53563e2b0218SMatthew G. Knepley if (support[0] == cellStart) s = 1; 53573e2b0218SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 53583e2b0218SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 53593e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL)); 53603e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c])); 53613e2b0218SMatthew G. Knepley } 53623e2b0218SMatthew G. Knepley } 536307218a29SMatthew G. Knepley } 53643e9753d6SMatthew G. Knepley /* 2: Setup geometric data */ 53659566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 53669566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 53673e9753d6SMatthew G. Knepley if (maxDegree > 1) { 53689566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 53693e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 53703e9753d6SMatthew G. Knepley PetscFE fe; 53713e9753d6SMatthew G. Knepley 53729566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 53733e9753d6SMatthew G. Knepley if (fe) { 53749566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 53759566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 53763e9753d6SMatthew G. Knepley } 53773e9753d6SMatthew G. Knepley } 53783e9753d6SMatthew G. Knepley } 53793e9753d6SMatthew G. Knepley /* Loop over chunks */ 53803e9753d6SMatthew G. Knepley cellChunkSize = numCells; 53813e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 538207218a29SMatthew G. Knepley PetscCall(PetscCalloc1(2 * cellChunkSize, &faces)); 538307218a29SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 53843e9753d6SMatthew G. Knepley /* Extract field coefficients */ 53853e9753d6SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 538607218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 538707218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 53883e2b0218SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 538907218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg)); 539007218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos)); 539107218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh)); 53923e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 53933e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 53943e9753d6SMatthew G. Knepley 539507218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim)); 539607218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim)); 539707218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim)); 53983e9753d6SMatthew G. Knepley /* Get faces */ 53993e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 54003e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 54013e9753d6SMatthew G. Knepley const PetscInt *cone; 54029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 540307218a29SMatthew G. Knepley faces[(c - cS) * 2 + 0] = cone[0]; 540407218a29SMatthew G. Knepley faces[(c - cS) * 2 + 1] = cone[1]; 54053e9753d6SMatthew G. Knepley } 540607218a29SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER)); 54073e9753d6SMatthew G. Knepley /* Get geometric data */ 54083e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 54099566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 54109566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 54113e9753d6SMatthew G. Knepley } else { 54123e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 54139566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 54143e9753d6SMatthew G. Knepley } 54153e9753d6SMatthew G. Knepley } 54163e9753d6SMatthew G. Knepley /* Loop over fields */ 54173e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 54183e9753d6SMatthew G. Knepley PetscFE fe; 54193e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 5420148442b3SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 54213e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 54223e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 54235fedec97SMatthew G. Knepley PetscBool isCohesiveField; 54243e9753d6SMatthew G. Knepley 54259566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 54263e9753d6SMatthew G. Knepley if (!fe) continue; 54279566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 54289566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 54299566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 54303e9753d6SMatthew G. Knepley blockSize = Nb; 54313e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 54329566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 54333e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 54343e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 54353e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 54363e9753d6SMatthew G. Knepley offset = numCells - Nr; 543707218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom)); 543807218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom)); 54399566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 54405fedec97SMatthew G. Knepley chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE; 54416528b96dSMatthew G. Knepley key[0].field = f; 54426528b96dSMatthew G. Knepley key[1].field = f; 54435fedec97SMatthew G. Knepley key[2].field = f; 544407218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVecNeg)); 54458e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, &elemVecNeg[offset * totDim])); 544607218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVecPos)); 54478e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, &elemVecPos[offset * totDim])); 544807218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVecCoh)); 54498e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, &elemVecCoh[offset * totDim])); 54509566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 54519566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 54523e9753d6SMatthew G. Knepley } 54533e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 54543e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 54553e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 54563e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 545707218a29SMatthew G. Knepley PetscInt i; 54583e9753d6SMatthew G. Knepley 545907218a29SMatthew G. Knepley /* Scale element values */ 546007218a29SMatthew G. Knepley if (locS[0]) { 54613e2b0218SMatthew G. Knepley PetscInt Nb, off = cind * totDim, soff = cind * totDimScale[0]; 546207218a29SMatthew G. Knepley PetscBool cohesive; 546307218a29SMatthew G. Knepley 546407218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 546507218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, f, &Nb)); 546607218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 546707218a29SMatthew G. Knepley if (f == key[2].field) { 546807218a29SMatthew G. Knepley PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields"); 546907218a29SMatthew G. Knepley // No cohesive scaling field is currently input 547007218a29SMatthew G. Knepley for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i]; 547107218a29SMatthew G. Knepley off += Nb; 547207218a29SMatthew G. Knepley } else { 547307218a29SMatthew G. Knepley const PetscInt N = cohesive ? Nb : Nb * 2; 547407218a29SMatthew G. Knepley 547507218a29SMatthew G. Knepley for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i]; 547607218a29SMatthew G. Knepley off += N; 547707218a29SMatthew G. Knepley } 547807218a29SMatthew G. Knepley } 547907218a29SMatthew G. Knepley } else { 548007218a29SMatthew G. Knepley for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i]; 548107218a29SMatthew G. Knepley } 548207218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim])); 54833e9753d6SMatthew G. Knepley if (ghostLabel) { 54843e9753d6SMatthew G. Knepley PetscInt ghostVal; 54853e9753d6SMatthew G. Knepley 54869566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 54873e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 54883e9753d6SMatthew G. Knepley } 548907218a29SMatthew G. Knepley PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES)); 54903e9753d6SMatthew G. Knepley } 54913e9753d6SMatthew G. Knepley } 54929566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 549307218a29SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 54943e2b0218SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 549507218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg)); 549607218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos)); 549707218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh)); 54989566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 54999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 55009566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 55013e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 55029566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 55039566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 55043e9753d6SMatthew G. Knepley } else { 55053e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 55069566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 55079566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 55083e9753d6SMatthew G. Knepley } 55099566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 55103e9753d6SMatthew G. Knepley } 551185cc2951SMatthew G. Knepley if (mesh->printFEM) { 551285cc2951SMatthew G. Knepley Vec locFbc; 551385cc2951SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 551485cc2951SMatthew G. Knepley PetscScalar *zeroes; 551585cc2951SMatthew G. Knepley 551685cc2951SMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 551785cc2951SMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 551885cc2951SMatthew G. Knepley PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 551985cc2951SMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 552085cc2951SMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 552185cc2951SMatthew G. Knepley for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 552285cc2951SMatthew G. Knepley PetscCall(PetscFree(zeroes)); 552385cc2951SMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 552485cc2951SMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 552585cc2951SMatthew G. Knepley } 55263cc88e6aSStefano Zampini end: 55279566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 55283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55293e9753d6SMatthew G. Knepley } 55303e9753d6SMatthew G. Knepley 5531a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS) 5532d71ae5a4SJacob Faibussowitsch { 55333e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 55343e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL, tdm; 55353e9753d6SMatthew G. Knepley DMEnclosureType encAux; 5536be62b2b4SMatthew G. Knepley PetscDS ds, dsAux = NULL; 55373e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 5538e432b41dSStefano Zampini PetscSection globalSection; 55393e9753d6SMatthew G. Knepley Vec locA = NULL, tv; 5540be62b2b4SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL; 55413e9753d6SMatthew G. Knepley PetscInt v; 55423e9753d6SMatthew G. Knepley PetscInt Nf, totDim, totDimAux = 0; 5543be62b2b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, transform; 55443e9753d6SMatthew G. Knepley 55453e9753d6SMatthew G. Knepley PetscFunctionBegin; 55469566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 55479566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 55489566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 55499566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 55509566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 5551be62b2b4SMatthew G. Knepley PetscCall(DMGetDS(dm, &ds)); 5552be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetNumFields(ds, &Nf)); 5553be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 5554be62b2b4SMatthew G. Knepley PetscCall(PetscDSHasJacobian(ds, &hasJac)); 5555be62b2b4SMatthew G. Knepley PetscCall(PetscDSHasJacobianPreconditioner(ds, &hasPrec)); 55569566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA)); 55573e9753d6SMatthew G. Knepley if (locA) { 55583e9753d6SMatthew G. Knepley DM dmAux; 55593e9753d6SMatthew G. Knepley 55609566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 55619566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 55629566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 5563be62b2b4SMatthew G. Knepley PetscCall(DMGetDS(plexA, &dsAux)); 5564be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 55659566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 55663e9753d6SMatthew G. Knepley } 55673e9753d6SMatthew G. Knepley 55689566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 55693e9753d6SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 55703e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 55713e9753d6SMatthew G. Knepley PetscInt maxDegree; 55723e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 55733e9753d6SMatthew G. Knepley IS pointIS; 55743e9753d6SMatthew G. Knepley const PetscInt *points; 557506ad1575SMatthew G. Knepley PetscFormKey key; 55763e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 55773e9753d6SMatthew G. Knepley 557845480ffeSMatthew G. Knepley key.label = label; 557945480ffeSMatthew G. Knepley key.value = values[v]; 558006ad1575SMatthew G. Knepley key.part = 0; 55819566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 55823e9753d6SMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 55833e9753d6SMatthew G. Knepley { 55843e9753d6SMatthew G. Knepley IS isectIS; 55853e9753d6SMatthew G. Knepley 55863e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */ 55879566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 55889566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 55893e9753d6SMatthew G. Knepley pointIS = isectIS; 55903e9753d6SMatthew G. Knepley } 55919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 55929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 5593be62b2b4SMatthew G. Knepley PetscCall(PetscMalloc5(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, hasJac ? numFaces * totDim * totDim : 0, &elemMat, hasPrec ? numFaces * totDim * totDim : 0, &elemMatP, locA ? numFaces * totDimAux : 0, &a)); 55949566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 559548a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 55963e9753d6SMatthew G. Knepley if (!qGeom) { 55973e9753d6SMatthew G. Knepley PetscFE fe; 55983e9753d6SMatthew G. Knepley 5599be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe)); 56009566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 56019566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 56023e9753d6SMatthew G. Knepley } 56039566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 56049566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 56053e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 5606f15274beSMatthew Knepley const PetscInt point = points[face], *support; 56073e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 5608f15274beSMatthew Knepley PetscInt i; 56093e9753d6SMatthew G. Knepley 56109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 56119566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 56123e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 56139566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 56143e9753d6SMatthew G. Knepley if (locX_t) { 56159566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 56163e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 56179566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 56183e9753d6SMatthew G. Knepley } 56193e9753d6SMatthew G. Knepley if (locA) { 56203e9753d6SMatthew G. Knepley PetscInt subp; 56219566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 56229566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 56233e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 56249566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 56253e9753d6SMatthew G. Knepley } 56263e9753d6SMatthew G. Knepley } 56279566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim)); 56283e9753d6SMatthew G. Knepley { 56293e9753d6SMatthew G. Knepley PetscFE fe; 56303e9753d6SMatthew G. Knepley PetscInt Nb; 56313e9753d6SMatthew G. Knepley /* Conforming batches */ 56323e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 56333e9753d6SMatthew G. Knepley /* Remainder */ 56343e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 56353e9753d6SMatthew G. Knepley PetscInt fieldJ, Nr, offset; 56363e9753d6SMatthew G. Knepley 5637be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe)); 56389566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 56399566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 56403e9753d6SMatthew G. Knepley blockSize = Nb; 56413e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 56429566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 56433e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 56443e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 56453e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 56463e9753d6SMatthew G. Knepley offset = numFaces - Nr; 56479566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 56483e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 564945480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 5650be62b2b4SMatthew G. Knepley if (hasJac) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMat)); 5651be62b2b4SMatthew G. Knepley if (hasPrec) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMatP)); 56523e9753d6SMatthew G. Knepley } 56539566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 56543e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 565545480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 5656be62b2b4SMatthew G. Knepley if (hasJac) 56578e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim])); 5658be62b2b4SMatthew G. Knepley if (hasPrec) 56598e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim])); 56603e9753d6SMatthew G. Knepley } 56619566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 56623e9753d6SMatthew G. Knepley } 56633e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 56643e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 56653e9753d6SMatthew G. Knepley 56663e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 56679566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 56689566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim])); 5669be62b2b4SMatthew G. Knepley if (hasPrec) { 5670be62b2b4SMatthew G. Knepley if (hasJac) { 56719566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim])); 5672e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES)); 56733e9753d6SMatthew G. Knepley } 5674be62b2b4SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMatP[face * totDim * totDim])); 5675be62b2b4SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMatP[face * totDim * totDim], ADD_VALUES)); 5676be62b2b4SMatthew G. Knepley } else { 5677be62b2b4SMatthew G. Knepley if (hasJac) { 5678be62b2b4SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim])); 5679be62b2b4SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES)); 5680be62b2b4SMatthew G. Knepley } 5681be62b2b4SMatthew G. Knepley } 5682be62b2b4SMatthew G. Knepley } 56839566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 56849566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 56859566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 56869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5687be62b2b4SMatthew G. Knepley PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, a)); 56883e9753d6SMatthew G. Knepley } 56899566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 56909566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 56913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56923e9753d6SMatthew G. Knepley } 56933e9753d6SMatthew G. Knepley 5694d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP) 5695d71ae5a4SJacob Faibussowitsch { 56963e9753d6SMatthew G. Knepley DMField coordField; 56973e9753d6SMatthew G. Knepley DMLabel depthLabel; 56983e9753d6SMatthew G. Knepley IS facetIS; 56993e9753d6SMatthew G. Knepley PetscInt dim; 57003e9753d6SMatthew G. Knepley 57013e9753d6SMatthew G. Knepley PetscFunctionBegin; 57029566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 57039566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 57049566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 57059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 57069566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 57079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 57083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57093e9753d6SMatthew G. Knepley } 57103e9753d6SMatthew G. Knepley 5711a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user) 5712d71ae5a4SJacob Faibussowitsch { 57133e9753d6SMatthew G. Knepley PetscDS prob; 57143e9753d6SMatthew G. Knepley PetscInt dim, numBd, bd; 57153e9753d6SMatthew G. Knepley DMLabel depthLabel; 57163e9753d6SMatthew G. Knepley DMField coordField = NULL; 57173e9753d6SMatthew G. Knepley IS facetIS; 57183e9753d6SMatthew G. Knepley 57193e9753d6SMatthew G. Knepley PetscFunctionBegin; 57209566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 57219566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 57229566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 57239566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 57249566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 57259566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 57263e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 572745480ffeSMatthew G. Knepley PetscWeakForm wf; 57283e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 57293e9753d6SMatthew G. Knepley DMLabel label; 57303e9753d6SMatthew G. Knepley const PetscInt *values; 57313e9753d6SMatthew G. Knepley PetscInt fieldI, numValues; 57323e9753d6SMatthew G. Knepley PetscObject obj; 57333e9753d6SMatthew G. Knepley PetscClassId id; 57343e9753d6SMatthew G. Knepley 57359566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL)); 57363d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 57379566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj)); 57389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 57393d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 57409566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 57413e9753d6SMatthew G. Knepley } 57429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 57433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57443e9753d6SMatthew G. Knepley } 57453e9753d6SMatthew G. Knepley 5746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user) 5747d71ae5a4SJacob Faibussowitsch { 57483e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 57493e9753d6SMatthew G. Knepley const char *name = "Jacobian"; 57509a2a23afSMatthew G. Knepley DM dmAux = NULL, plex, tdm; 57513e9753d6SMatthew G. Knepley DMEnclosureType encAux; 57523e9753d6SMatthew G. Knepley Vec A, tv; 57533e9753d6SMatthew G. Knepley DMField coordField; 57543e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 5755e432b41dSStefano Zampini PetscSection section, globalSection, sectionAux; 57563e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL; 57573e9753d6SMatthew G. Knepley const PetscInt *cells; 57583e9753d6SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 575928351e22SJed Brown PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 5760e04ae0b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform; 57613e9753d6SMatthew G. Knepley 57623e9753d6SMatthew G. Knepley PetscFunctionBegin; 5763af18b51aSmarkadams4 PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 5764e04ae0b4SMatthew G. Knepley if (!cellIS) goto end; 57659566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5766437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 5767437e83fbSMatthew G. Knepley if (cStart >= cEnd) goto end; 57689566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 57699566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 57709566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 57719566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 57729566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 577307218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 57749566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 57759566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 57769566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 57779566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 57783e9753d6SMatthew G. Knepley /* user passed in the same matrix, avoid double contributions and 57793e9753d6SMatthew G. Knepley only assemble the Jacobian */ 57803e9753d6SMatthew G. Knepley if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE; 57819566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 57823e9753d6SMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 57839566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 57849a2a23afSMatthew G. Knepley if (A) { 57859566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 57869566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 57879566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plex)); 57889566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex, §ionAux)); 57899566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 57909566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 57913e9753d6SMatthew G. Knepley } 57929566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD)); 57939566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 57949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 57953e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 57963e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 57973e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 57983e9753d6SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 57993e9753d6SMatthew G. Knepley PetscInt i; 58003e9753d6SMatthew G. Knepley 58019566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 58023e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 58039566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 58043e9753d6SMatthew G. Knepley if (X_t) { 58059566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 58063e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 58079566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 58083e9753d6SMatthew G. Knepley } 58093e9753d6SMatthew G. Knepley if (dmAux) { 58103e9753d6SMatthew G. Knepley PetscInt subcell; 58119566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 58129566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x)); 58133e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 58149566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x)); 58153e9753d6SMatthew G. Knepley } 58163e9753d6SMatthew G. Knepley } 58179566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 58189566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim)); 58199566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 58203e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 58213e9753d6SMatthew G. Knepley PetscClassId id; 58223e9753d6SMatthew G. Knepley PetscFE fe; 58233e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 58243e9753d6SMatthew G. Knepley PetscInt Nb; 58253e9753d6SMatthew G. Knepley /* Conforming batches */ 58263e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 58273e9753d6SMatthew G. Knepley /* Remainder */ 58283e9753d6SMatthew G. Knepley PetscInt Nr, offset, Nq; 58293e9753d6SMatthew G. Knepley PetscInt maxDegree; 58303e9753d6SMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 58313e9753d6SMatthew G. Knepley 58329566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 58339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fe, &id)); 58349371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 58359371c9d4SSatish Balay hasFV = PETSC_TRUE; 58369371c9d4SSatish Balay continue; 58379371c9d4SSatish Balay } 58389566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 58399566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 58409566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 584148a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 58423e9753d6SMatthew G. Knepley if (!qGeom) { 58439566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 58449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 58453e9753d6SMatthew G. Knepley } 58469566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 58479566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 58483e9753d6SMatthew G. Knepley blockSize = Nb; 58493e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 58509566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 58513e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 58523e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 58533e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 58543e9753d6SMatthew G. Knepley offset = numCells - Nr; 58559566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 58569566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 58573e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 58586528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 58593e9753d6SMatthew G. Knepley if (hasJac) { 58609566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 58618e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim])); 58623e9753d6SMatthew G. Knepley } 58633e9753d6SMatthew G. Knepley if (hasPrec) { 58649566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP)); 58658e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim])); 58663e9753d6SMatthew G. Knepley } 58673e9753d6SMatthew G. Knepley if (hasDyn) { 58689566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 58698e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatD[offset * totDim * totDim])); 58703e9753d6SMatthew G. Knepley } 58713e9753d6SMatthew G. Knepley } 58729566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 58739566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 58749566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 58759566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 58763e9753d6SMatthew G. Knepley } 58773e9753d6SMatthew G. Knepley /* Add contribution from X_t */ 58789371c9d4SSatish Balay if (hasDyn) { 58799371c9d4SSatish Balay for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 58809371c9d4SSatish Balay } 58813e9753d6SMatthew G. Knepley if (hasFV) { 58823e9753d6SMatthew G. Knepley PetscClassId id; 58833e9753d6SMatthew G. Knepley PetscFV fv; 58843e9753d6SMatthew G. Knepley PetscInt offsetI, NcI, NbI = 1, fc, f; 58853e9753d6SMatthew G. Knepley 58863e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 58879566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 58889566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI)); 58899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fv, &id)); 58903e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 58913e9753d6SMatthew G. Knepley /* Put in the identity */ 58929566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcI)); 58933e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 58943e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 58953e9753d6SMatthew G. Knepley const PetscInt eOffset = cind * totDim * totDim; 58963e9753d6SMatthew G. Knepley for (fc = 0; fc < NcI; ++fc) { 58973e9753d6SMatthew G. Knepley for (f = 0; f < NbI; ++f) { 58983e9753d6SMatthew G. Knepley const PetscInt i = offsetI + f * NcI + fc; 58993e9753d6SMatthew G. Knepley if (hasPrec) { 5900ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 59013e9753d6SMatthew G. Knepley elemMatP[eOffset + i * totDim + i] = 1.0; 59029371c9d4SSatish Balay } else { 59039371c9d4SSatish Balay elemMat[eOffset + i * totDim + i] = 1.0; 59049371c9d4SSatish Balay } 59053e9753d6SMatthew G. Knepley } 59063e9753d6SMatthew G. Knepley } 59073e9753d6SMatthew G. Knepley } 59083e9753d6SMatthew G. Knepley } 59093e9753d6SMatthew G. Knepley /* No allocated space for FV stuff, so ignore the zero entries */ 59109566063dSJacob Faibussowitsch PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); 59113e9753d6SMatthew G. Knepley } 59123e9753d6SMatthew G. Knepley /* Insert values into matrix */ 59133e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 59143e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 59153e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 59163e9753d6SMatthew G. Knepley 59173e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 59189566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim])); 59193e9753d6SMatthew G. Knepley if (hasPrec) { 59203e9753d6SMatthew G. Knepley if (hasJac) { 59219566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 5922e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 59233e9753d6SMatthew G. Knepley } 59249566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim])); 5925be62b2b4SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES)); 59263e9753d6SMatthew G. Knepley } else { 59273e9753d6SMatthew G. Knepley if (hasJac) { 59289566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 5929e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 59303e9753d6SMatthew G. Knepley } 59313e9753d6SMatthew G. Knepley } 59323e9753d6SMatthew G. Knepley } 59339566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 59349566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 59359566063dSJacob Faibussowitsch PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD)); 59363e9753d6SMatthew G. Knepley if (dmAux) { 59379566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 59389566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 59393e9753d6SMatthew G. Knepley } 59403e9753d6SMatthew G. Knepley /* Compute boundary integrals */ 59419566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user)); 59423e9753d6SMatthew G. Knepley /* Assemble matrix */ 59439371c9d4SSatish Balay end : { 5944e04ae0b4SMatthew G. Knepley PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp; 5945e04ae0b4SMatthew G. Knepley 5946712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 59473e9753d6SMatthew G. Knepley if (hasJac && hasPrec) { 59489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 59499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 59503e9753d6SMatthew G. Knepley } 5951e04ae0b4SMatthew G. Knepley } 59529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 59539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 59549566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 59553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59563e9753d6SMatthew G. Knepley } 59573e9753d6SMatthew G. Knepley 5958d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user) 5959d71ae5a4SJacob Faibussowitsch { 59603e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 59613e9753d6SMatthew G. Knepley const char *name = "Hybrid Jacobian"; 5962148442b3SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 5963148442b3SMatthew G. Knepley DMLabel ghostLabel = NULL; 59643e9753d6SMatthew G. Knepley DM plex = NULL; 59653e9753d6SMatthew G. Knepley DM plexA = NULL; 5966148442b3SMatthew G. Knepley PetscDS ds = NULL; 596707218a29SMatthew G. Knepley PetscDS dsIn = NULL; 5968148442b3SMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 5969148442b3SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 597007218a29SMatthew G. Knepley DM dmScale[3] = {NULL, NULL, NULL}; 597107218a29SMatthew G. Knepley PetscDS dsScale[3] = {NULL, NULL, NULL}; 597207218a29SMatthew G. Knepley Vec locS[3] = {NULL, NULL, NULL}; 59733e9753d6SMatthew G. Knepley PetscSection section = NULL; 5974148442b3SMatthew G. Knepley PetscSection sectionAux[3] = {NULL, NULL, NULL}; 59753e9753d6SMatthew G. Knepley DMField coordField = NULL; 597607218a29SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 597707218a29SMatthew G. Knepley PetscScalar *s[3] = {NULL, NULL, NULL}; 597807218a29SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 597907218a29SMatthew G. Knepley PetscScalar *elemMatNeg, *elemMatPos, *elemMatCoh; 598007218a29SMatthew G. Knepley PetscScalar *elemMatNegP, *elemMatPosP, *elemMatCohP; 5981e432b41dSStefano Zampini PetscSection globalSection; 59823e9753d6SMatthew G. Knepley IS chunkIS; 59833e9753d6SMatthew G. Knepley const PetscInt *cells; 59843e9753d6SMatthew G. Knepley PetscInt *faces; 59853e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 59863e2b0218SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk; 59873e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 59883e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 59893e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 5990e432b41dSStefano Zampini PetscBool hasBdJac, hasBdPrec; 59913e9753d6SMatthew G. Knepley 59923e9753d6SMatthew G. Knepley PetscFunctionBegin; 59933cc88e6aSStefano Zampini PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 59943cc88e6aSStefano Zampini if (!cellIS) goto end; 5995437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5996437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 59973cc88e6aSStefano Zampini if (cStart >= cEnd) goto end; 59985fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 59995fedec97SMatthew G. Knepley const char *name; 60009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 600163a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 60025fedec97SMatthew G. Knepley } 60039566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 60049566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 60059566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 60069566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 600707218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 60089566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 60099566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 601007218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn)); 60119566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac)); 60129566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec)); 60139566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 6014148442b3SMatthew G. Knepley if (locA[2]) { 60151059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 60161059d808SMatthew G. Knepley 60179566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 60189566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA)); 60199566063dSJacob Faibussowitsch PetscCall(DMGetSection(dmAux[2], §ionAux[2])); 602007218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL)); 60219566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 6022148442b3SMatthew G. Knepley { 6023148442b3SMatthew G. Knepley const PetscInt *cone; 6024148442b3SMatthew G. Knepley PetscInt c; 6025148442b3SMatthew G. Knepley 60261059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 6027148442b3SMatthew G. Knepley for (c = 0; c < 2; ++c) { 6028148442b3SMatthew G. Knepley const PetscInt *support; 6029148442b3SMatthew G. Knepley PetscInt ssize, s; 6030148442b3SMatthew G. Knepley 60319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 60329566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 60331059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 60341059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 60351059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 60361059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 60379566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 60389566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 6039ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 604007218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL)); 60419566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 6042148442b3SMatthew G. Knepley } 6043148442b3SMatthew G. Knepley } 60443e9753d6SMatthew G. Knepley } 604507218a29SMatthew G. Knepley /* Handle mass matrix scaling 604607218a29SMatthew G. Knepley The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */ 604707218a29SMatthew G. Knepley PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2])); 604807218a29SMatthew G. Knepley if (locS[2]) { 60493e2b0218SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 605007218a29SMatthew G. Knepley PetscInt Nb, Nbs; 605107218a29SMatthew G. Knepley 605207218a29SMatthew G. Knepley PetscCall(VecGetDM(locS[2], &dmScale[2])); 605307218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL)); 60543e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2])); 605507218a29SMatthew G. Knepley // BRAD: This is not set correctly 605607218a29SMatthew G. Knepley key[2].field = 2; 605707218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb)); 605807218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs)); 605907218a29SMatthew G. Knepley PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs); 60603e2b0218SMatthew G. Knepley { 60613e2b0218SMatthew G. Knepley const PetscInt *cone; 60623e2b0218SMatthew G. Knepley PetscInt c; 60633e2b0218SMatthew G. Knepley 60643e2b0218SMatthew G. Knepley locS[1] = locS[0] = locS[2]; 60653e2b0218SMatthew G. Knepley dmScale[1] = dmScale[0] = dmScale[2]; 60663e2b0218SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 60673e2b0218SMatthew G. Knepley for (c = 0; c < 2; ++c) { 60683e2b0218SMatthew G. Knepley const PetscInt *support; 60693e2b0218SMatthew G. Knepley PetscInt ssize, s; 60703e2b0218SMatthew G. Knepley 60713e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 60723e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 60733e2b0218SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 60743e2b0218SMatthew G. Knepley if (support[0] == cellStart) s = 1; 60753e2b0218SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 60763e2b0218SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 60773e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL)); 60783e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c])); 60793e2b0218SMatthew G. Knepley } 60803e2b0218SMatthew G. Knepley } 608107218a29SMatthew G. Knepley } 608207218a29SMatthew G. Knepley /* 2: Setup geometric data */ 60839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 60849566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 60853e9753d6SMatthew G. Knepley if (maxDegree > 1) { 60863e9753d6SMatthew G. Knepley PetscInt f; 60879566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 60883e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 60893e9753d6SMatthew G. Knepley PetscFE fe; 60903e9753d6SMatthew G. Knepley 60919566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 60923e9753d6SMatthew G. Knepley if (fe) { 60939566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 60949566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 60953e9753d6SMatthew G. Knepley } 60963e9753d6SMatthew G. Knepley } 60973e9753d6SMatthew G. Knepley } 609807218a29SMatthew G. Knepley /* Loop over chunks */ 60993e9753d6SMatthew G. Knepley cellChunkSize = numCells; 61003e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 610107218a29SMatthew G. Knepley PetscCall(PetscCalloc1(2 * cellChunkSize, &faces)); 6102a4158a15SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 610307218a29SMatthew G. Knepley /* Extract field coefficients */ 610407218a29SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 610507218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 610607218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 61078bf0a22dSMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 610807218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg)); 610907218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos)); 611007218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh)); 611107218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP)); 611207218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP)); 611307218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP)); 61143e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 61153e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 61163e9753d6SMatthew G. Knepley 611707218a29SMatthew G. Knepley if (hasBdJac) { 611807218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim)); 611907218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim)); 612007218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim)); 612107218a29SMatthew G. Knepley } 612207218a29SMatthew G. Knepley if (hasBdPrec) { 612307218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim)); 612407218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim)); 612507218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim)); 612607218a29SMatthew G. Knepley } 61273e9753d6SMatthew G. Knepley /* Get faces */ 61283e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 61293e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 61303e9753d6SMatthew G. Knepley const PetscInt *cone; 61319566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex, cell, &cone)); 613207218a29SMatthew G. Knepley faces[(c - cS) * 2 + 0] = cone[0]; 613307218a29SMatthew G. Knepley faces[(c - cS) * 2 + 1] = cone[1]; 61343e9753d6SMatthew G. Knepley } 613507218a29SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 2 * cellChunkSize, faces, PETSC_USE_POINTER)); 61363e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 61379566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 61389566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 61393e9753d6SMatthew G. Knepley } else { 61403e9753d6SMatthew G. Knepley PetscInt f; 61413e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 61429566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 61433e9753d6SMatthew G. Knepley } 61443e9753d6SMatthew G. Knepley } 61453e9753d6SMatthew G. Knepley 61463e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 61473e9753d6SMatthew G. Knepley PetscFE feI; 61483e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[fieldI]; 61493e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 61503e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI]; 61513e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 61525fedec97SMatthew G. Knepley PetscBool isCohesiveField; 61533e9753d6SMatthew G. Knepley 61549566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI)); 61553e9753d6SMatthew G. Knepley if (!feI) continue; 61569566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches)); 61579566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 61589566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feI, &Nb)); 61593e9753d6SMatthew G. Knepley blockSize = Nb; 61603e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 61619566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches)); 61623e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 61633e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 61643e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 61653e9753d6SMatthew G. Knepley offset = numCells - Nr; 616607218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, 0, offset * 2, &chunkGeom)); 616707218a29SMatthew G. Knepley PetscCall(PetscFEGeomGetChunk(geom, offset * 2, numCells * 2, &remGeom)); 61689566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField)); 61693e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 61703e9753d6SMatthew G. Knepley PetscFE feJ; 61713e9753d6SMatthew G. Knepley 61729566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ)); 61733e9753d6SMatthew G. Knepley if (!feJ) continue; 6174148442b3SMatthew G. Knepley key[0].field = fieldI * Nf + fieldJ; 6175148442b3SMatthew G. Knepley key[1].field = fieldI * Nf + fieldJ; 61765fedec97SMatthew G. Knepley key[2].field = fieldI * Nf + fieldJ; 6177148442b3SMatthew G. Knepley if (hasBdJac) { 617807218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg)); 61798e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, X_tShift, &elemMatNeg[offset * totDim * totDim])); 618007218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos)); 61818e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, X_tShift, &elemMatPos[offset * totDim * totDim])); 6182148442b3SMatthew G. Knepley } 6183148442b3SMatthew G. Knepley if (hasBdPrec) { 618407218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP)); 61858e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim])); 618607218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP)); 61878e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim])); 6188148442b3SMatthew G. Knepley } 61895fedec97SMatthew G. Knepley if (hasBdJac) { 619007218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh)); 61918e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, X_tShift, &elemMatCoh[offset * totDim * totDim])); 6192148442b3SMatthew G. Knepley } 61935fedec97SMatthew G. Knepley if (hasBdPrec) { 619407218a29SMatthew G. Knepley PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP)); 61958e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim])); 61963e9753d6SMatthew G. Knepley } 61973e9753d6SMatthew G. Knepley } 61989566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 61999566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 62003e9753d6SMatthew G. Knepley } 62013e9753d6SMatthew G. Knepley /* Insert values into matrix */ 62023e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 62033e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 620407218a29SMatthew G. Knepley const PetscInt cind = c - cS, coff = cind * totDim * totDim; 620507218a29SMatthew G. Knepley PetscInt i, j; 62063e9753d6SMatthew G. Knepley 620707218a29SMatthew G. Knepley /* Scale element values */ 620807218a29SMatthew G. Knepley if (locS[0]) { 62093e2b0218SMatthew G. Knepley PetscInt Nb, soff = cind * totDimScale[0], off = 0; 621007218a29SMatthew G. Knepley PetscBool cohesive; 621107218a29SMatthew G. Knepley 621207218a29SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 621307218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb)); 621407218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive)); 621507218a29SMatthew G. Knepley 621607218a29SMatthew G. Knepley if (fieldI == key[2].field) { 621707218a29SMatthew G. Knepley PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields"); 62188bf0a22dSMatthew G. Knepley for (i = 0; i < Nb; ++i) { 621907218a29SMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j]; 62208bf0a22dSMatthew G. Knepley if (hasBdPrec) 62218bf0a22dSMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNegP[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPosP[coff + (off + i) * totDim + j]; 62228bf0a22dSMatthew G. Knepley } 622307218a29SMatthew G. Knepley off += Nb; 622407218a29SMatthew G. Knepley } else { 622507218a29SMatthew G. Knepley const PetscInt N = cohesive ? Nb : Nb * 2; 622607218a29SMatthew G. Knepley 62278bf0a22dSMatthew G. Knepley for (i = 0; i < N; ++i) { 622807218a29SMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j]; 62298bf0a22dSMatthew G. Knepley if (hasBdPrec) 62308bf0a22dSMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += elemMatNegP[coff + (off + i) * totDim + j] + elemMatPosP[coff + (off + i) * totDim + j]; 62318bf0a22dSMatthew G. Knepley } 623207218a29SMatthew G. Knepley off += N; 623307218a29SMatthew G. Knepley } 623407218a29SMatthew G. Knepley } 623507218a29SMatthew G. Knepley } else { 623607218a29SMatthew G. Knepley for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i]; 62378bf0a22dSMatthew G. Knepley if (hasBdPrec) 62388bf0a22dSMatthew G. Knepley for (i = 0; i < totDim * totDim; ++i) elemMatCohP[coff + i] += elemMatNegP[coff + i] + elemMatPosP[coff + i]; 623907218a29SMatthew G. Knepley } 62403e9753d6SMatthew G. Knepley if (hasBdPrec) { 62413e9753d6SMatthew G. Knepley if (hasBdJac) { 624207218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim])); 6243e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES)); 62443e9753d6SMatthew G. Knepley } 624507218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim])); 624607218a29SMatthew G. Knepley PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES)); 62473e9753d6SMatthew G. Knepley } else if (hasBdJac) { 624807218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim])); 6249e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES)); 62503e9753d6SMatthew G. Knepley } 62513e9753d6SMatthew G. Knepley } 62523e9753d6SMatthew G. Knepley } 62539566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 625407218a29SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 625507218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg)); 625607218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos)); 625707218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh)); 625807218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP)); 625907218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP)); 626007218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP)); 62619566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 62629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 62639566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 62643e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 62659566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 62669566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 62673e9753d6SMatthew G. Knepley } else { 62683e9753d6SMatthew G. Knepley PetscInt f; 62693e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 62709566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 62719566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 62723e9753d6SMatthew G. Knepley } 62739566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 62743e9753d6SMatthew G. Knepley } 62759566063dSJacob Faibussowitsch if (dmAux[2]) PetscCall(DMDestroy(&plexA)); 62769566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 62773cc88e6aSStefano Zampini end: 62789566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 62793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62803e9753d6SMatthew G. Knepley } 62818e3a2eefSMatthew G. Knepley 62828e3a2eefSMatthew G. Knepley /* 62838e3a2eefSMatthew G. Knepley DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user. 62848e3a2eefSMatthew G. Knepley 62858e3a2eefSMatthew G. Knepley Input Parameters: 62868e3a2eefSMatthew G. Knepley + dm - The mesh 6287baca6076SPierre Jolivet . key - The PetscWeakFormKey indicating where integration should happen 628806ad1575SMatthew G. Knepley . cellIS - The cells to integrate over 62898e3a2eefSMatthew G. Knepley . t - The time 6290145b44c9SPierre Jolivet . X_tShift - The multiplier for the Jacobian with respect to X_t 62918e3a2eefSMatthew G. Knepley . X - Local solution vector 62928e3a2eefSMatthew G. Knepley . X_t - Time-derivative of the local solution vector 62938e3a2eefSMatthew G. Knepley . Y - Local input vector 629406ad1575SMatthew G. Knepley - user - the user context 62958e3a2eefSMatthew G. Knepley 62968e3a2eefSMatthew G. Knepley Output Parameter: 62978e3a2eefSMatthew G. Knepley . Z - Local output vector 62988e3a2eefSMatthew G. Knepley 62998e3a2eefSMatthew G. Knepley Note: 63008e3a2eefSMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 63018e3a2eefSMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 63028e3a2eefSMatthew G. Knepley */ 6303d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user) 6304d71ae5a4SJacob Faibussowitsch { 63058e3a2eefSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 63068e3a2eefSMatthew G. Knepley const char *name = "Jacobian"; 63078e3a2eefSMatthew G. Knepley DM dmAux = NULL, plex, plexAux = NULL; 63088e3a2eefSMatthew G. Knepley DMEnclosureType encAux; 63098e3a2eefSMatthew G. Knepley Vec A; 63108e3a2eefSMatthew G. Knepley DMField coordField; 63118e3a2eefSMatthew G. Knepley PetscDS prob, probAux = NULL; 63128e3a2eefSMatthew G. Knepley PetscQuadrature quad; 63138e3a2eefSMatthew G. Knepley PetscSection section, globalSection, sectionAux; 63148e3a2eefSMatthew G. Knepley PetscScalar *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z; 63158e3a2eefSMatthew G. Knepley const PetscInt *cells; 63168e3a2eefSMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 63178e3a2eefSMatthew G. Knepley PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 63188e3a2eefSMatthew G. Knepley PetscBool hasDyn; 63198e3a2eefSMatthew G. Knepley 63208e3a2eefSMatthew G. Knepley PetscFunctionBegin; 632121d77094SMatthew G. Knepley if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS); 63229566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 63239566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 63249566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 63259566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 63269566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 63279566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 632807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 63299566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 63309566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 63319566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 63328e3a2eefSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 63339566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 63348e3a2eefSMatthew G. Knepley if (A) { 63359566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 63369566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 63379566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexAux)); 63389566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexAux, §ionAux)); 63399566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 63409566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 63418e3a2eefSMatthew G. Knepley } 63429566063dSJacob Faibussowitsch PetscCall(VecSet(Z, 0.0)); 63439566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z)); 63449566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 63459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 63468e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 63478e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 63488e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 63498e3a2eefSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 63508e3a2eefSMatthew G. Knepley PetscInt i; 63518e3a2eefSMatthew G. Knepley 63529566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x)); 63538e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 63549566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x)); 63558e3a2eefSMatthew G. Knepley if (X_t) { 63569566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t)); 63578e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 63589566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t)); 63598e3a2eefSMatthew G. Knepley } 63608e3a2eefSMatthew G. Knepley if (dmAux) { 63618e3a2eefSMatthew G. Knepley PetscInt subcell; 63629566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 63639566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 63648e3a2eefSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 63659566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 63668e3a2eefSMatthew G. Knepley } 63679566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x)); 63688e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i]; 63699566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x)); 63708e3a2eefSMatthew G. Knepley } 63719566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 63729566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 63738e3a2eefSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 63748e3a2eefSMatthew G. Knepley PetscFE fe; 63758e3a2eefSMatthew G. Knepley PetscInt Nb; 63768e3a2eefSMatthew G. Knepley /* Conforming batches */ 63778e3a2eefSMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 63788e3a2eefSMatthew G. Knepley /* Remainder */ 63798e3a2eefSMatthew G. Knepley PetscInt Nr, offset, Nq; 63808e3a2eefSMatthew G. Knepley PetscQuadrature qGeom = NULL; 63818e3a2eefSMatthew G. Knepley PetscInt maxDegree; 63828e3a2eefSMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 63838e3a2eefSMatthew G. Knepley 63849566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 63859566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 63869566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 63879566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 63889566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 63899566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 63908e3a2eefSMatthew G. Knepley if (!qGeom) { 63919566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 63929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 63938e3a2eefSMatthew G. Knepley } 63949566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 63959566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 63968e3a2eefSMatthew G. Knepley blockSize = Nb; 63978e3a2eefSMatthew G. Knepley batchSize = numBlocks * blockSize; 63989566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 63998e3a2eefSMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 64008e3a2eefSMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 64018e3a2eefSMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 64028e3a2eefSMatthew G. Knepley offset = numCells - Nr; 64039566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 64049566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 64058e3a2eefSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 64068e3a2eefSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 64079566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 64088e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim])); 64098e3a2eefSMatthew G. Knepley if (hasDyn) { 64109566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 64118e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim])); 64128e3a2eefSMatthew G. Knepley } 64138e3a2eefSMatthew G. Knepley } 64149566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 64159566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 64169566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 64179566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 64188e3a2eefSMatthew G. Knepley } 64198e3a2eefSMatthew G. Knepley if (hasDyn) { 64208e3a2eefSMatthew G. Knepley for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 64218e3a2eefSMatthew G. Knepley } 64228e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 64238e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 64248e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 64258e3a2eefSMatthew G. Knepley const PetscBLASInt M = totDim, one = 1; 64268e3a2eefSMatthew G. Knepley const PetscScalar a = 1.0, b = 0.0; 64278e3a2eefSMatthew G. Knepley 6428792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one)); 64298e3a2eefSMatthew G. Knepley if (mesh->printFEM > 1) { 64309566063dSJacob Faibussowitsch PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 64319566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim])); 64329566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Z", totDim, z)); 64338e3a2eefSMatthew G. Knepley } 64349566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES)); 64358e3a2eefSMatthew G. Knepley } 64369566063dSJacob Faibussowitsch PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z)); 64378e3a2eefSMatthew G. Knepley if (mesh->printFEM) { 64389566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n")); 64399566063dSJacob Faibussowitsch PetscCall(VecView(Z, NULL)); 64408e3a2eefSMatthew G. Knepley } 64411059d808SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 64429566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 64439566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexAux)); 64449566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 64459566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 64463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 64478e3a2eefSMatthew G. Knepley } 6448