1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 4af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 5af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 6a0845e3aSMatthew G. Knepley 7cb1e1211SMatthew G Knepley #undef __FUNCT__ 8cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexGetScale" 9cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 10cb1e1211SMatthew G Knepley { 11cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 12cb1e1211SMatthew G Knepley 13cb1e1211SMatthew G Knepley PetscFunctionBegin; 14cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15cb1e1211SMatthew G Knepley PetscValidPointer(scale, 3); 16cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 17cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 18cb1e1211SMatthew G Knepley } 19cb1e1211SMatthew G Knepley 20cb1e1211SMatthew G Knepley #undef __FUNCT__ 21cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexSetScale" 22cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 23cb1e1211SMatthew G Knepley { 24cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 25cb1e1211SMatthew G Knepley 26cb1e1211SMatthew G Knepley PetscFunctionBegin; 27cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 29cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 30cb1e1211SMatthew G Knepley } 31cb1e1211SMatthew G Knepley 32cb1e1211SMatthew G Knepley PETSC_STATIC_INLINE PetscInt epsilon(PetscInt i, PetscInt j, PetscInt k) 33cb1e1211SMatthew G Knepley { 34cb1e1211SMatthew G Knepley switch (i) { 35cb1e1211SMatthew G Knepley case 0: 36cb1e1211SMatthew G Knepley switch (j) { 37cb1e1211SMatthew G Knepley case 0: return 0; 38cb1e1211SMatthew G Knepley case 1: 39cb1e1211SMatthew G Knepley switch (k) { 40cb1e1211SMatthew G Knepley case 0: return 0; 41cb1e1211SMatthew G Knepley case 1: return 0; 42cb1e1211SMatthew G Knepley case 2: return 1; 43cb1e1211SMatthew G Knepley } 44cb1e1211SMatthew G Knepley case 2: 45cb1e1211SMatthew G Knepley switch (k) { 46cb1e1211SMatthew G Knepley case 0: return 0; 47cb1e1211SMatthew G Knepley case 1: return -1; 48cb1e1211SMatthew G Knepley case 2: return 0; 49cb1e1211SMatthew G Knepley } 50cb1e1211SMatthew G Knepley } 51cb1e1211SMatthew G Knepley case 1: 52cb1e1211SMatthew G Knepley switch (j) { 53cb1e1211SMatthew G Knepley case 0: 54cb1e1211SMatthew G Knepley switch (k) { 55cb1e1211SMatthew G Knepley case 0: return 0; 56cb1e1211SMatthew G Knepley case 1: return 0; 57cb1e1211SMatthew G Knepley case 2: return -1; 58cb1e1211SMatthew G Knepley } 59cb1e1211SMatthew G Knepley case 1: return 0; 60cb1e1211SMatthew G Knepley case 2: 61cb1e1211SMatthew G Knepley switch (k) { 62cb1e1211SMatthew G Knepley case 0: return 1; 63cb1e1211SMatthew G Knepley case 1: return 0; 64cb1e1211SMatthew G Knepley case 2: return 0; 65cb1e1211SMatthew G Knepley } 66cb1e1211SMatthew G Knepley } 67cb1e1211SMatthew G Knepley case 2: 68cb1e1211SMatthew G Knepley switch (j) { 69cb1e1211SMatthew G Knepley case 0: 70cb1e1211SMatthew G Knepley switch (k) { 71cb1e1211SMatthew G Knepley case 0: return 0; 72cb1e1211SMatthew G Knepley case 1: return 1; 73cb1e1211SMatthew G Knepley case 2: return 0; 74cb1e1211SMatthew G Knepley } 75cb1e1211SMatthew G Knepley case 1: 76cb1e1211SMatthew G Knepley switch (k) { 77cb1e1211SMatthew G Knepley case 0: return -1; 78cb1e1211SMatthew G Knepley case 1: return 0; 79cb1e1211SMatthew G Knepley case 2: return 0; 80cb1e1211SMatthew G Knepley } 81cb1e1211SMatthew G Knepley case 2: return 0; 82cb1e1211SMatthew G Knepley } 83cb1e1211SMatthew G Knepley } 84cb1e1211SMatthew G Knepley return 0; 85cb1e1211SMatthew G Knepley } 86cb1e1211SMatthew G Knepley 87cb1e1211SMatthew G Knepley #undef __FUNCT__ 88d1828a1cSMatthew G. Knepley #define __FUNCT__ "DMPlexProjectRigidBody_Private" 89d1828a1cSMatthew G. Knepley static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nf, PetscScalar *mode, void *ctx) 90026175e5SToby Isaac { 91026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *) ctx; 92ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 93026175e5SToby Isaac PetscInt d = ctxInt[1]; 94026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 95026175e5SToby Isaac 96ad917190SMatthew G. Knepley PetscFunctionBegin; 97ad917190SMatthew G. Knepley if (dim != dim2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %d does not match context dimension %d", dim, dim2); 98026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 99026175e5SToby Isaac if (d < dim) { 100026175e5SToby Isaac mode[d] = 1.; 101ad917190SMatthew G. Knepley } else { 102026175e5SToby Isaac for (i = 0; i < dim; i++) { 103026175e5SToby Isaac for (j = 0; j < dim; j++) { 104026175e5SToby Isaac mode[j] += epsilon(i, j, k)*X[i]; 105026175e5SToby Isaac } 106026175e5SToby Isaac } 107026175e5SToby Isaac } 108ad917190SMatthew G. Knepley PetscFunctionReturn(0); 109026175e5SToby Isaac } 110026175e5SToby Isaac 111026175e5SToby Isaac #undef __FUNCT__ 112cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexCreateRigidBody" 113cb1e1211SMatthew G Knepley /*@C 114026175e5SToby Isaac DMPlexCreateRigidBody - for the default global section, create rigid body modes from coordinates 115cb1e1211SMatthew G Knepley 116cb1e1211SMatthew G Knepley Collective on DM 117cb1e1211SMatthew G Knepley 118cb1e1211SMatthew G Knepley Input Arguments: 119026175e5SToby Isaac . dm - the DM 120cb1e1211SMatthew G Knepley 121cb1e1211SMatthew G Knepley Output Argument: 122cb1e1211SMatthew G Knepley . sp - the null space 123cb1e1211SMatthew G Knepley 124cb1e1211SMatthew G Knepley Note: This is necessary to take account of Dirichlet conditions on the displacements 125cb1e1211SMatthew G Knepley 126cb1e1211SMatthew G Knepley Level: advanced 127cb1e1211SMatthew G Knepley 128cb1e1211SMatthew G Knepley .seealso: MatNullSpaceCreate() 129cb1e1211SMatthew G Knepley @*/ 130026175e5SToby Isaac PetscErrorCode DMPlexCreateRigidBody(DM dm, MatNullSpace *sp) 131cb1e1211SMatthew G Knepley { 132cb1e1211SMatthew G Knepley MPI_Comm comm; 133026175e5SToby Isaac Vec mode[6]; 134026175e5SToby Isaac PetscSection section, globalSection; 1359d8fbdeaSMatthew G. Knepley PetscInt dim, dimEmbed, n, m, d, i, j; 136cb1e1211SMatthew G Knepley PetscErrorCode ierr; 137cb1e1211SMatthew G Knepley 138cb1e1211SMatthew G Knepley PetscFunctionBegin; 139cb1e1211SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 140c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1419d8fbdeaSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 142cb1e1211SMatthew G Knepley if (dim == 1) { 143cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr); 144cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 145cb1e1211SMatthew G Knepley } 146026175e5SToby Isaac ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 147026175e5SToby Isaac ierr = DMGetDefaultGlobalSection(dm, &globalSection);CHKERRQ(ierr); 148cb1e1211SMatthew G Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 149cb1e1211SMatthew G Knepley m = (dim*(dim+1))/2; 150cb1e1211SMatthew G Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 151cb1e1211SMatthew G Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 152cb1e1211SMatthew G Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 153cb1e1211SMatthew G Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 154026175e5SToby Isaac for (d = 0; d < m; d++) { 155330485fdSToby Isaac PetscInt ctx[2]; 156d1828a1cSMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 157026175e5SToby Isaac void *voidctx = (void *) (&ctx[0]); 158cb1e1211SMatthew G Knepley 1599d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 160330485fdSToby Isaac ctx[1] = d; 1610709b2feSToby Isaac ierr = DMProjectFunction(dm, 0.0, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 162cb1e1211SMatthew G Knepley } 163cb1e1211SMatthew G Knepley for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 164cb1e1211SMatthew G Knepley /* Orthonormalize system */ 165cb1e1211SMatthew G Knepley for (i = dim; i < m; ++i) { 166cb1e1211SMatthew G Knepley PetscScalar dots[6]; 167cb1e1211SMatthew G Knepley 168cb1e1211SMatthew G Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 169cb1e1211SMatthew G Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 170cb1e1211SMatthew G Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 171cb1e1211SMatthew G Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 172cb1e1211SMatthew G Knepley } 173cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr); 174cb1e1211SMatthew G Knepley for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 175cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 176cb1e1211SMatthew G Knepley } 177cb1e1211SMatthew G Knepley 178cb1e1211SMatthew G Knepley #undef __FUNCT__ 179b29cfa1cSToby Isaac #define __FUNCT__ "DMPlexSetMaxProjectionHeight" 180b29cfa1cSToby Isaac /*@ 181b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 182b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 183b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 184b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 185b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 186b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 187b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 188b29cfa1cSToby Isaac 189b29cfa1cSToby Isaac Input Parameters: 190b29cfa1cSToby Isaac + dm - the DMPlex object 191b29cfa1cSToby Isaac - height - the maximum projection height >= 0 192b29cfa1cSToby Isaac 193b29cfa1cSToby Isaac Level: advanced 194b29cfa1cSToby Isaac 1954d6f44ffSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 196b29cfa1cSToby Isaac @*/ 197b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 198b29cfa1cSToby Isaac { 199b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 200b29cfa1cSToby Isaac 201b29cfa1cSToby Isaac PetscFunctionBegin; 202b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 203b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 204b29cfa1cSToby Isaac PetscFunctionReturn(0); 205b29cfa1cSToby Isaac } 206b29cfa1cSToby Isaac 207b29cfa1cSToby Isaac #undef __FUNCT__ 208b29cfa1cSToby Isaac #define __FUNCT__ "DMPlexGetMaxProjectionHeight" 209b29cfa1cSToby Isaac /*@ 210b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 211b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 212b29cfa1cSToby Isaac 213b29cfa1cSToby Isaac Input Parameters: 214b29cfa1cSToby Isaac . dm - the DMPlex object 215b29cfa1cSToby Isaac 216b29cfa1cSToby Isaac Output Parameters: 217b29cfa1cSToby Isaac . height - the maximum projection height 218b29cfa1cSToby Isaac 219b29cfa1cSToby Isaac Level: intermediate 220b29cfa1cSToby Isaac 2214d6f44ffSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 222b29cfa1cSToby Isaac @*/ 223b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 224b29cfa1cSToby Isaac { 225b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 226b29cfa1cSToby Isaac 227b29cfa1cSToby Isaac PetscFunctionBegin; 228b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 229b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 230b29cfa1cSToby Isaac PetscFunctionReturn(0); 231b29cfa1cSToby Isaac } 232b29cfa1cSToby Isaac 233b29cfa1cSToby Isaac #undef __FUNCT__ 234d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FEM_Internal" 2350163fd50SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FEM_Internal(DM dm, PetscReal time, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 23655f2e967SMatthew G. Knepley { 2370163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 23855f2e967SMatthew G. Knepley void **ctxs; 239d7ddef95SMatthew G. Knepley PetscInt numFields; 240d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 241d7ddef95SMatthew G. Knepley 242d7ddef95SMatthew G. Knepley PetscFunctionBegin; 243d7ddef95SMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 244d7ddef95SMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 245d7ddef95SMatthew G. Knepley funcs[field] = func; 246d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 2470709b2feSToby Isaac ierr = DMProjectFunctionLabelLocal(dm, time, label, numids, ids, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 248d7ddef95SMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 249d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 250d7ddef95SMatthew G. Knepley } 251d7ddef95SMatthew G. Knepley 252d7ddef95SMatthew G. Knepley #undef __FUNCT__ 253c60e475cSMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FEM_AuxField_Internal" 254c60e475cSMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FEM_AuxField_Internal(DM dm, PetscReal time, Vec locU, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], 255c60e475cSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 256c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 257c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 258c60e475cSMatthew G. Knepley PetscReal, const PetscReal[], PetscScalar[]), void *ctx, Vec locX) 259c60e475cSMatthew G. Knepley { 260c60e475cSMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 261c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 262c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 263c60e475cSMatthew G. Knepley PetscReal, const PetscReal[], PetscScalar[]); 264c60e475cSMatthew G. Knepley void **ctxs; 265c60e475cSMatthew G. Knepley PetscInt numFields; 266c60e475cSMatthew G. Knepley PetscErrorCode ierr; 267c60e475cSMatthew G. Knepley 268c60e475cSMatthew G. Knepley PetscFunctionBegin; 269c60e475cSMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 270c60e475cSMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 271c60e475cSMatthew G. Knepley funcs[field] = func; 272c60e475cSMatthew G. Knepley ctxs[field] = ctx; 273c60e475cSMatthew G. Knepley ierr = DMProjectFieldLabelLocal(dm, time, label, numids, ids, locU, funcs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 274c60e475cSMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 275c60e475cSMatthew G. Knepley PetscFunctionReturn(0); 276c60e475cSMatthew G. Knepley } 277c60e475cSMatthew G. Knepley 278c60e475cSMatthew G. Knepley #undef __FUNCT__ 279d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FVM_Internal" 2800e0f25f2SMatthew G. Knepley /* This ignores numcomps/comps */ 281d7ddef95SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FVM_Internal(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, 282d7ddef95SMatthew G. Knepley PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 283d7ddef95SMatthew G. Knepley { 28461f58d28SMatthew G. Knepley PetscDS prob; 285da97024aSMatthew G. Knepley PetscSF sf; 286d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 28720369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 288da97024aSMatthew G. Knepley const PetscInt *leaves; 289d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 290520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 291e735a8a9SMatthew G. Knepley PetscErrorCode ierr, ierru = 0; 292d7ddef95SMatthew G. Knepley 293d7ddef95SMatthew G. Knepley PetscFunctionBegin; 294da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 295da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 296da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 297d7ddef95SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 298d7ddef95SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 29961f58d28SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 300d7ddef95SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 301d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 30220369375SToby Isaac if (cellGeometry) { 303d7ddef95SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 304d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 30520369375SToby Isaac } 306d7ddef95SMatthew G. Knepley if (Grad) { 307c0a6632aSMatthew G. Knepley PetscFV fv; 308c0a6632aSMatthew G. Knepley 309c0a6632aSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fv);CHKERRQ(ierr); 310d7ddef95SMatthew G. Knepley ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr); 311d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr); 312d7ddef95SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 313d7ddef95SMatthew G. Knepley ierr = DMGetWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 314d7ddef95SMatthew G. Knepley } 315d7ddef95SMatthew G. Knepley ierr = VecGetArray(locX, &x);CHKERRQ(ierr); 316d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 317d7ddef95SMatthew G. Knepley IS faceIS; 318d7ddef95SMatthew G. Knepley const PetscInt *faces; 319d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 320d7ddef95SMatthew G. Knepley 321d7ddef95SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr); 322d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 323d7ddef95SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 324d7ddef95SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 325d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 326d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 327640bce14SSatish Balay PetscFVFaceGeom *fg; 328d7ddef95SMatthew G. Knepley 329d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 330da97024aSMatthew G. Knepley ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr); 331da97024aSMatthew G. Knepley if (loc >= 0) continue; 332d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 333d7ddef95SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 334d7ddef95SMatthew G. Knepley if (Grad) { 335640bce14SSatish Balay PetscFVCellGeom *cg; 336640bce14SSatish Balay PetscScalar *cx, *cgrad; 337d7ddef95SMatthew G. Knepley PetscScalar *xG; 338d7ddef95SMatthew G. Knepley PetscReal dx[3]; 339d7ddef95SMatthew G. Knepley PetscInt d; 340d7ddef95SMatthew G. Knepley 341d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr); 342d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr); 343d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr); 344520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 345d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 346d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 347e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx); 348e735a8a9SMatthew G. Knepley if (ierru) { 349e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 350e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 351e735a8a9SMatthew G. Knepley goto cleanup; 352e735a8a9SMatthew G. Knepley } 353d7ddef95SMatthew G. Knepley } else { 354640bce14SSatish Balay PetscScalar *xI; 355d7ddef95SMatthew G. Knepley PetscScalar *xG; 356d7ddef95SMatthew G. Knepley 357d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr); 358520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 359e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 360e735a8a9SMatthew G. Knepley if (ierru) { 361e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 362e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 363e735a8a9SMatthew G. Knepley goto cleanup; 364e735a8a9SMatthew G. Knepley } 365d7ddef95SMatthew G. Knepley } 366d7ddef95SMatthew G. Knepley } 367d7ddef95SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 368d7ddef95SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 369d7ddef95SMatthew G. Knepley } 370e735a8a9SMatthew G. Knepley cleanup: 371d7ddef95SMatthew G. Knepley ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr); 372d7ddef95SMatthew G. Knepley if (Grad) { 373d7ddef95SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 374d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr); 375d7ddef95SMatthew G. Knepley } 376e735a8a9SMatthew G. Knepley if (cellGeometry) {ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);} 377d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 378e735a8a9SMatthew G. Knepley CHKERRQ(ierru); 379d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 380d7ddef95SMatthew G. Knepley } 381d7ddef95SMatthew G. Knepley 382d7ddef95SMatthew G. Knepley #undef __FUNCT__ 383d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues" 3849d24f7bbSMatthew G. Knepley /*@ 3859d24f7bbSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 3869d24f7bbSMatthew G. Knepley 3879d24f7bbSMatthew G. Knepley Input Parameters: 3889d24f7bbSMatthew G. Knepley + dm - The DM 3899d24f7bbSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 3909d24f7bbSMatthew G. Knepley . time - The time 3919d24f7bbSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 3929d24f7bbSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 3939d24f7bbSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 3949d24f7bbSMatthew G. Knepley 3959d24f7bbSMatthew G. Knepley Output Parameters: 3969d24f7bbSMatthew G. Knepley . locX - Solution updated with boundary values 3979d24f7bbSMatthew G. Knepley 3989d24f7bbSMatthew G. Knepley Level: developer 3999d24f7bbSMatthew G. Knepley 4009d24f7bbSMatthew G. Knepley .seealso: DMProjectFunctionLabelLocal() 4019d24f7bbSMatthew G. Knepley @*/ 402bdd6f66aSToby Isaac PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 403d7ddef95SMatthew G. Knepley { 404d7ddef95SMatthew G. Knepley PetscInt numBd, b; 40555f2e967SMatthew G. Knepley PetscErrorCode ierr; 40655f2e967SMatthew G. Knepley 40755f2e967SMatthew G. Knepley PetscFunctionBegin; 40855f2e967SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 409d7ddef95SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 2); 410d7ddef95SMatthew G. Knepley if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);} 411d7ddef95SMatthew G. Knepley if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);} 412d7ddef95SMatthew G. Knepley if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);} 413dff059c6SToby Isaac ierr = PetscDSGetNumBoundary(dm->prob, &numBd);CHKERRQ(ierr); 41455f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 415f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 416d7ddef95SMatthew G. Knepley const char *labelname; 417d7ddef95SMatthew G. Knepley DMLabel label; 418d7ddef95SMatthew G. Knepley PetscInt field; 419d7ddef95SMatthew G. Knepley PetscObject obj; 420d7ddef95SMatthew G. Knepley PetscClassId id; 42155f2e967SMatthew G. Knepley void (*func)(); 422d7ddef95SMatthew G. Knepley PetscInt numids; 423d7ddef95SMatthew G. Knepley const PetscInt *ids; 42455f2e967SMatthew G. Knepley void *ctx; 42555f2e967SMatthew G. Knepley 426f971fd6bSMatthew G. Knepley ierr = DMGetBoundary(dm, b, &type, NULL, &labelname, &field, NULL, NULL, &func, &numids, &ids, &ctx);CHKERRQ(ierr); 427f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 428c58f1c22SToby Isaac ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr); 429d7ddef95SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 430d7ddef95SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 431d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 432c60e475cSMatthew G. Knepley switch (type) { 433c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 434c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL: 435092e5057SToby Isaac ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 4360163fd50SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FEM_Internal(dm, time, field, label, numids, ids, (PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr); 437092e5057SToby Isaac ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 438c60e475cSMatthew G. Knepley break; 439c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL_FIELD: 440c60e475cSMatthew G. Knepley ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 441c60e475cSMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FEM_AuxField_Internal(dm, time, locX, field, label, numids, ids, (void (*)(PetscInt, PetscInt, PetscInt, 442c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 443c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 444c60e475cSMatthew G. Knepley PetscReal, const PetscReal[], PetscScalar[])) func, ctx, locX);CHKERRQ(ierr); 445c60e475cSMatthew G. Knepley ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 446c60e475cSMatthew G. Knepley break; 447c60e475cSMatthew G. Knepley default: break; 448c60e475cSMatthew G. Knepley } 449d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 45043ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 451d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FVM_Internal(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, 452d7ddef95SMatthew G. Knepley field, label, numids, ids, (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr); 453d7ddef95SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 45455f2e967SMatthew G. Knepley } 45555f2e967SMatthew G. Knepley PetscFunctionReturn(0); 45655f2e967SMatthew G. Knepley } 45755f2e967SMatthew G. Knepley 458cb1e1211SMatthew G Knepley #undef __FUNCT__ 4590709b2feSToby Isaac #define __FUNCT__ "DMComputeL2Diff_Plex" 4600709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 461cb1e1211SMatthew G Knepley { 462cb1e1211SMatthew G Knepley const PetscInt debug = 0; 463cb1e1211SMatthew G Knepley PetscSection section; 464c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 465cb1e1211SMatthew G Knepley Vec localX; 46615496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 467*7318780aSToby Isaac PetscReal *coords, *detJ, *J; 468cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 469*7318780aSToby Isaac const PetscReal *quadWeights; 470*7318780aSToby Isaac PetscInt dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 471cb1e1211SMatthew G Knepley PetscErrorCode ierr; 472cb1e1211SMatthew G Knepley 473cb1e1211SMatthew G Knepley PetscFunctionBegin; 474c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 475*7318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 476cb1e1211SMatthew G Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 477cb1e1211SMatthew G Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 478cb1e1211SMatthew G Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 479bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 480cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 481cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 482cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 48315496722SMatthew G. Knepley PetscObject obj; 48415496722SMatthew G. Knepley PetscClassId id; 485c5bbbd5bSMatthew G. Knepley PetscInt Nc; 486c5bbbd5bSMatthew G. Knepley 48715496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 48815496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 48915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 49015496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 49115496722SMatthew G. Knepley 4920f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 4930f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 49415496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 49515496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 49615496722SMatthew G. Knepley 49715496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 49815496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 49915496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 500c5bbbd5bSMatthew G. Knepley numComponents += Nc; 501cb1e1211SMatthew G Knepley } 502*7318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, NULL, &quadWeights);CHKERRQ(ierr); 503*7318780aSToby Isaac ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 504cb1e1211SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 5059ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 5069ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 507cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 508a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 509cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 510cb1e1211SMatthew G Knepley 511*7318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 512cb1e1211SMatthew G Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 513cb1e1211SMatthew G Knepley 51415496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 51515496722SMatthew G. Knepley PetscObject obj; 51615496722SMatthew G. Knepley PetscClassId id; 517c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 51815496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 519cb1e1211SMatthew G Knepley 52015496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 52115496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 52215496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 52315496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 52415496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 525cb1e1211SMatthew G Knepley if (debug) { 526cb1e1211SMatthew G Knepley char title[1024]; 527cb1e1211SMatthew G Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 52815496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 529cb1e1211SMatthew G Knepley } 530*7318780aSToby Isaac for (q = 0; q < Nq; ++q) { 531*7318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, point %D", detJ[q], c, q); 532*7318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[coordDim * q], Nc, funcVal, ctx); 533e735a8a9SMatthew G. Knepley if (ierr) { 534e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 535e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 536e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 537*7318780aSToby Isaac ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2); 538e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 539e735a8a9SMatthew G. Knepley } 54015496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 54115496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 54215496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 54315496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 544*7318780aSToby Isaac if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);} 545*7318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]; 546cb1e1211SMatthew G Knepley } 547cb1e1211SMatthew G Knepley } 54815496722SMatthew G. Knepley fieldOffset += Nb*Nc; 549cb1e1211SMatthew G Knepley } 550cb1e1211SMatthew G Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 551cb1e1211SMatthew G Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 552cb1e1211SMatthew G Knepley localDiff += elemDiff; 553cb1e1211SMatthew G Knepley } 554*7318780aSToby Isaac ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 555cb1e1211SMatthew G Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 556b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 557cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 558cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 559cb1e1211SMatthew G Knepley } 560cb1e1211SMatthew G Knepley 561cb1e1211SMatthew G Knepley #undef __FUNCT__ 562b698f381SToby Isaac #define __FUNCT__ "DMComputeL2GradientDiff_Plex" 563b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 564cb1e1211SMatthew G Knepley { 56540e14135SMatthew G. Knepley const PetscInt debug = 0; 566cb1e1211SMatthew G Knepley PetscSection section; 56740e14135SMatthew G. Knepley PetscQuadrature quad; 56840e14135SMatthew G. Knepley Vec localX; 56940e14135SMatthew G. Knepley PetscScalar *funcVal, *interpolantVec; 570*7318780aSToby Isaac PetscReal *coords, *realSpaceDer, *J, *invJ, *detJ; 57140e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 572*7318780aSToby Isaac PetscInt dim, coordDim, Nq = 0, numFields, numComponents = 0, cStart, cEnd, cEndInterior, c, field, fieldOffset, comp; 573cb1e1211SMatthew G Knepley PetscErrorCode ierr; 574cb1e1211SMatthew G Knepley 575cb1e1211SMatthew G Knepley PetscFunctionBegin; 576c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 577*7318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 57840e14135SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 57940e14135SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 58040e14135SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 58140e14135SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 58240e14135SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 583652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 5840f2d7e86SMatthew G. Knepley PetscFE fe; 58540e14135SMatthew G. Knepley PetscInt Nc; 586652b88e8SMatthew G. Knepley 5870f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 5880f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 589*7318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 5900f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 59140e14135SMatthew G. Knepley numComponents += Nc; 592652b88e8SMatthew G. Knepley } 5934d6f44ffSToby Isaac /* ierr = DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */ 594*7318780aSToby Isaac ierr = PetscMalloc7(numComponents,&funcVal,coordDim*Nq,&coords,coordDim*Nq,&realSpaceDer,coordDim*coordDim*Nq,&J,coordDim*coordDim*Nq,&invJ,coordDim,&interpolantVec,Nq,&detJ);CHKERRQ(ierr); 59540e14135SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 5969ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 5979ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 59840e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 59940e14135SMatthew G. Knepley PetscScalar *x = NULL; 60040e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 601652b88e8SMatthew G. Knepley 602*7318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, invJ, detJ);CHKERRQ(ierr); 60340e14135SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 60440e14135SMatthew G. Knepley 60540e14135SMatthew G. Knepley for (field = 0, comp = 0, fieldOffset = 0; field < numFields; ++field) { 6060f2d7e86SMatthew G. Knepley PetscFE fe; 60751259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 60821454ff5SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 60940e14135SMatthew G. Knepley PetscReal *basisDer; 610*7318780aSToby Isaac PetscInt numQuadPoints, Nb, Ncomp, q, d, fc, f, g; 61140e14135SMatthew G. Knepley 6120f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 61321454ff5SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 6140f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 6150f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Ncomp);CHKERRQ(ierr); 6160f2d7e86SMatthew G. Knepley ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr); 61740e14135SMatthew G. Knepley if (debug) { 61840e14135SMatthew G. Knepley char title[1024]; 61940e14135SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 62040e14135SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Ncomp, &x[fieldOffset]);CHKERRQ(ierr); 621652b88e8SMatthew G. Knepley } 62240e14135SMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 623*7318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q); 624*7318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], n, numFields, funcVal, ctx); 625e735a8a9SMatthew G. Knepley if (ierr) { 626e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 627e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 628e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 629*7318780aSToby Isaac ierr2 = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolantVec,detJ);CHKERRQ(ierr2); 630e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 631e735a8a9SMatthew G. Knepley } 63240e14135SMatthew G. Knepley for (fc = 0; fc < Ncomp; ++fc) { 63340e14135SMatthew G. Knepley PetscScalar interpolant = 0.0; 63440e14135SMatthew G. Knepley 635*7318780aSToby Isaac for (d = 0; d < coordDim; ++d) interpolantVec[d] = 0.0; 63640e14135SMatthew G. Knepley for (f = 0; f < Nb; ++f) { 63740e14135SMatthew G. Knepley const PetscInt fidx = f*Ncomp+fc; 63840e14135SMatthew G. Knepley 639*7318780aSToby Isaac for (d = 0; d < coordDim; ++d) { 64040e14135SMatthew G. Knepley realSpaceDer[d] = 0.0; 64140e14135SMatthew G. Knepley for (g = 0; g < dim; ++g) { 642*7318780aSToby Isaac realSpaceDer[d] += invJ[coordDim * coordDim * q + g*coordDim+d]*basisDer[(q*Nb*Ncomp+fidx)*dim+g]; 64340e14135SMatthew G. Knepley } 64440e14135SMatthew G. Knepley interpolantVec[d] += x[fieldOffset+fidx]*realSpaceDer[d]; 64540e14135SMatthew G. Knepley } 64640e14135SMatthew G. Knepley } 647*7318780aSToby Isaac for (d = 0; d < coordDim; ++d) interpolant += interpolantVec[d]*n[d]; 648*7318780aSToby Isaac if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);} 649*7318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ[q]; 65040e14135SMatthew G. Knepley } 65140e14135SMatthew G. Knepley } 65240e14135SMatthew G. Knepley comp += Ncomp; 65340e14135SMatthew G. Knepley fieldOffset += Nb*Ncomp; 65440e14135SMatthew G. Knepley } 65540e14135SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 65640e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 65740e14135SMatthew G. Knepley localDiff += elemDiff; 65840e14135SMatthew G. Knepley } 659*7318780aSToby Isaac ierr = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolantVec,detJ);CHKERRQ(ierr); 66040e14135SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 661b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 66240e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 663cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 664cb1e1211SMatthew G Knepley } 665cb1e1211SMatthew G Knepley 666a0845e3aSMatthew G. Knepley #undef __FUNCT__ 6672a16baeaSToby Isaac #define __FUNCT__ "DMComputeL2FieldDiff_Plex" 668c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 66973d901b8SMatthew G. Knepley { 67073d901b8SMatthew G. Knepley const PetscInt debug = 0; 67173d901b8SMatthew G. Knepley PetscSection section; 67273d901b8SMatthew G. Knepley PetscQuadrature quad; 67373d901b8SMatthew G. Knepley Vec localX; 67415496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 675*7318780aSToby Isaac PetscReal *coords, *detJ, *J; 67673d901b8SMatthew G. Knepley PetscReal *localDiff; 67715496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 678*7318780aSToby Isaac PetscInt dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 67973d901b8SMatthew G. Knepley PetscErrorCode ierr; 68073d901b8SMatthew G. Knepley 68173d901b8SMatthew G. Knepley PetscFunctionBegin; 682c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 683*7318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 68473d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 68573d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 68673d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 687bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 68873d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 68973d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 69073d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 69115496722SMatthew G. Knepley PetscObject obj; 69215496722SMatthew G. Knepley PetscClassId id; 69373d901b8SMatthew G. Knepley PetscInt Nc; 69473d901b8SMatthew G. Knepley 69515496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 69615496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 69715496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 69815496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 69915496722SMatthew G. Knepley 7000f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 7010f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 70215496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 70315496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 70415496722SMatthew G. Knepley 70515496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 70615496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 70715496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 70873d901b8SMatthew G. Knepley numComponents += Nc; 70973d901b8SMatthew G. Knepley } 710*7318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 711*7318780aSToby Isaac ierr = PetscCalloc6(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 71273d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 7139ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 7149ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 71573d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 71673d901b8SMatthew G. Knepley PetscScalar *x = NULL; 71773d901b8SMatthew G. Knepley 718*7318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 71973d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 72073d901b8SMatthew G. Knepley 72115496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 72215496722SMatthew G. Knepley PetscObject obj; 72315496722SMatthew G. Knepley PetscClassId id; 72473d901b8SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 72515496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 72673d901b8SMatthew G. Knepley 72715496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 72815496722SMatthew G. Knepley 72915496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 73015496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 73115496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 73215496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 73315496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 73473d901b8SMatthew G. Knepley if (debug) { 73573d901b8SMatthew G. Knepley char title[1024]; 73673d901b8SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 73715496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 73873d901b8SMatthew G. Knepley } 739*7318780aSToby Isaac for (q = 0; q < Nq; ++q) { 740*7318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature point %D", detJ, c, q); 741*7318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[coordDim*q], numFields, funcVal, ctx); 742e735a8a9SMatthew G. Knepley if (ierr) { 743e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 744e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 745e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 746*7318780aSToby Isaac ierr2 = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2); 747e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 748e735a8a9SMatthew G. Knepley } 74915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 75015496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 75115496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 75215496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 753*7318780aSToby Isaac if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d point %g %g %g diff %g\n", c, field, coordDim > 0 ? coords[0] : 0., coordDim > 1 ? coords[1] : 0., coordDim > 2 ? coords[2] : 0., PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);} 754*7318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]; 75573d901b8SMatthew G. Knepley } 75673d901b8SMatthew G. Knepley } 75715496722SMatthew G. Knepley fieldOffset += Nb*Nc; 75873d901b8SMatthew G. Knepley localDiff[field] += elemDiff; 75973d901b8SMatthew G. Knepley } 76073d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 76173d901b8SMatthew G. Knepley } 76273d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 763b2566f29SBarry Smith ierr = MPIU_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 76473d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]); 765*7318780aSToby Isaac ierr = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 76673d901b8SMatthew G. Knepley PetscFunctionReturn(0); 76773d901b8SMatthew G. Knepley } 76873d901b8SMatthew G. Knepley 76973d901b8SMatthew G. Knepley #undef __FUNCT__ 770e729f68cSMatthew G. Knepley #define __FUNCT__ "DMPlexComputeL2DiffVec" 771e729f68cSMatthew G. Knepley /*@C 772e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 773e729f68cSMatthew G. Knepley 774e729f68cSMatthew G. Knepley Input Parameters: 775e729f68cSMatthew G. Knepley + dm - The DM 7760163fd50SMatthew G. Knepley . time - The time 777ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 778e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 779e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 780e729f68cSMatthew G. Knepley 781e729f68cSMatthew G. Knepley Output Parameter: 782e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 783e729f68cSMatthew G. Knepley 784e729f68cSMatthew G. Knepley Level: developer 785e729f68cSMatthew G. Knepley 786b698f381SToby Isaac .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 787e729f68cSMatthew G. Knepley @*/ 7880163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 789e729f68cSMatthew G. Knepley { 790e729f68cSMatthew G. Knepley PetscSection section; 791e729f68cSMatthew G. Knepley PetscQuadrature quad; 792e729f68cSMatthew G. Knepley Vec localX; 793e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 794*7318780aSToby Isaac PetscReal *coords, *detJ, *J; 795e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 796*7318780aSToby Isaac PetscInt dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 797e729f68cSMatthew G. Knepley PetscErrorCode ierr; 798e729f68cSMatthew G. Knepley 799e729f68cSMatthew G. Knepley PetscFunctionBegin; 800e729f68cSMatthew G. Knepley ierr = VecSet(D, 0.0);CHKERRQ(ierr); 801e729f68cSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 802*7318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 803e729f68cSMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 804e729f68cSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 805e729f68cSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 806bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 807e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 808e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 809e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 810e729f68cSMatthew G. Knepley PetscObject obj; 811e729f68cSMatthew G. Knepley PetscClassId id; 812e729f68cSMatthew G. Knepley PetscInt Nc; 813e729f68cSMatthew G. Knepley 814e729f68cSMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 815e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 816e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 817e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 818e729f68cSMatthew G. Knepley 819e729f68cSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 820e729f68cSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 821e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 822e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 823e729f68cSMatthew G. Knepley 824e729f68cSMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 825e729f68cSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 826e729f68cSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 827e729f68cSMatthew G. Knepley numComponents += Nc; 828e729f68cSMatthew G. Knepley } 829*7318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 830*7318780aSToby Isaac ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 831e729f68cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 832e729f68cSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 833e729f68cSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 834e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 835e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 8366f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 837e729f68cSMatthew G. Knepley 838*7318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 839e729f68cSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 840e729f68cSMatthew G. Knepley 841e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 842e729f68cSMatthew G. Knepley PetscObject obj; 843e729f68cSMatthew G. Knepley PetscClassId id; 844e729f68cSMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 845e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 846e729f68cSMatthew G. Knepley 847e729f68cSMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 848e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 849e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 850e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 851e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 85223f34ed2SToby Isaac if (funcs[field]) { 853*7318780aSToby Isaac for (q = 0; q < Nq; ++q) { 854*7318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q); 855*7318780aSToby Isaac ierr = (*funcs[field])(dim, time, &coords[q*coordDim], Nc, funcVal, ctx); 856e735a8a9SMatthew G. Knepley if (ierr) { 857e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 858e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 859*7318780aSToby Isaac ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 860e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 861e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 862e735a8a9SMatthew G. Knepley } 863e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 864e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 865e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 866e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 867*7318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]; 868e729f68cSMatthew G. Knepley } 869e729f68cSMatthew G. Knepley } 87023f34ed2SToby Isaac } 871e729f68cSMatthew G. Knepley fieldOffset += Nb*Nc; 872e729f68cSMatthew G. Knepley } 873e729f68cSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 87423f34ed2SToby Isaac ierr = VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES);CHKERRQ(ierr); 875e729f68cSMatthew G. Knepley } 876*7318780aSToby Isaac ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 877e729f68cSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 878e729f68cSMatthew G. Knepley ierr = VecSqrtAbs(D);CHKERRQ(ierr); 879e729f68cSMatthew G. Knepley PetscFunctionReturn(0); 880e729f68cSMatthew G. Knepley } 881e729f68cSMatthew G. Knepley 882e729f68cSMatthew G. Knepley #undef __FUNCT__ 88373d901b8SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeIntegralFEM" 88473d901b8SMatthew G. Knepley /*@ 88573d901b8SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the local integral F from the local input X using pointwise functions specified by the user 88673d901b8SMatthew G. Knepley 88773d901b8SMatthew G. Knepley Input Parameters: 88873d901b8SMatthew G. Knepley + dm - The mesh 88973d901b8SMatthew G. Knepley . X - Local input vector 89073d901b8SMatthew G. Knepley - user - The user context 89173d901b8SMatthew G. Knepley 89273d901b8SMatthew G. Knepley Output Parameter: 89373d901b8SMatthew G. Knepley . integral - Local integral for each field 89473d901b8SMatthew G. Knepley 89573d901b8SMatthew G. Knepley Level: developer 89673d901b8SMatthew G. Knepley 89773d901b8SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 89873d901b8SMatthew G. Knepley @*/ 8990f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscReal *integral, void *user) 90073d901b8SMatthew G. Knepley { 90173d901b8SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 902b5a3613cSMatthew G. Knepley DM dmAux, dmGrad; 903425f1808SMatthew G. Knepley Vec localX, A, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 9042764a2aaSMatthew G. Knepley PetscDS prob, probAux = NULL; 90573d901b8SMatthew G. Knepley PetscSection section, sectionAux; 906b5a3613cSMatthew G. Knepley PetscFV fvm = NULL; 907b5a3613cSMatthew G. Knepley PetscFECellGeom *cgeomFEM; 908b5a3613cSMatthew G. Knepley PetscFVFaceGeom *fgeomFVM; 909b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 91073d901b8SMatthew G. Knepley PetscScalar *u, *a = NULL; 911b5a3613cSMatthew G. Knepley const PetscScalar *lgrad; 912b5a3613cSMatthew G. Knepley PetscReal *lintegral; 913b5a3613cSMatthew G. Knepley PetscInt *uOff, *uOff_x, *aOff = NULL; 914b5a3613cSMatthew G. Knepley PetscInt dim, Nf, NfAux = 0, f, numCells, cStart, cEnd, cEndInterior, c; 9150f2d7e86SMatthew G. Knepley PetscInt totDim, totDimAux; 916425f1808SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 91773d901b8SMatthew G. Knepley PetscErrorCode ierr; 91873d901b8SMatthew G. Knepley 91973d901b8SMatthew G. Knepley PetscFunctionBegin; 920c1f031eeSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 92173d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 922bdd6f66aSToby Isaac ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 92373d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 92473d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 925c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 92673d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 9272764a2aaSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 9282764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 929b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 930b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 93173d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 93273d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 9339ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 9349ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 93573d901b8SMatthew G. Knepley numCells = cEnd - cStart; 93673d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 93773d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 93873d901b8SMatthew G. Knepley if (dmAux) { 9392764a2aaSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 940b5a3613cSMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 941b5a3613cSMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 9422764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 943b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 944b5a3613cSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(probAux, &a, NULL, NULL);CHKERRQ(ierr); 94573d901b8SMatthew G. Knepley } 946b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 947b5a3613cSMatthew G. Knepley PetscObject obj; 948b5a3613cSMatthew G. Knepley PetscClassId id; 949b5a3613cSMatthew G. Knepley 950b5a3613cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 951b5a3613cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 952b5a3613cSMatthew G. Knepley if (id == PETSCFV_CLASSID) {useFVM = PETSC_TRUE; fvm = (PetscFV) obj;} 953b5a3613cSMatthew G. Knepley } 954b5a3613cSMatthew G. Knepley if (useFVM) { 955b5a3613cSMatthew G. Knepley Vec grad; 956b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 957b5a3613cSMatthew G. Knepley PetscBool compGrad; 958b5a3613cSMatthew G. Knepley 959b5a3613cSMatthew G. Knepley ierr = PetscFVGetComputeGradients(fvm, &compGrad);CHKERRQ(ierr); 960b5a3613cSMatthew G. Knepley ierr = PetscFVSetComputeGradients(fvm, PETSC_TRUE);CHKERRQ(ierr); 961b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM);CHKERRQ(ierr); 962b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGradientFVM(dm, fvm, faceGeometryFVM, cellGeometryFVM, &dmGrad);CHKERRQ(ierr); 963b5a3613cSMatthew G. Knepley ierr = PetscFVSetComputeGradients(fvm, compGrad);CHKERRQ(ierr); 964b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr); 965b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 966b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 967b5a3613cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 968b5a3613cSMatthew G. Knepley ierr = DMGetGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 969b5a3613cSMatthew G. Knepley ierr = DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, localX, grad);CHKERRQ(ierr); 970b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 971b5a3613cSMatthew G. Knepley ierr = DMGetLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 972b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 973b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 974b5a3613cSMatthew G. Knepley ierr = DMRestoreGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 975b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 976b5a3613cSMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_FALSE, localX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad);CHKERRQ(ierr); 977b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 978b5a3613cSMatthew G. Knepley } 979b5a3613cSMatthew G. Knepley ierr = PetscMalloc3(Nf,&lintegral,numCells*totDim,&u,numCells,&cgeomFEM);CHKERRQ(ierr); 9800f2d7e86SMatthew G. Knepley if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);} 981c1f031eeSMatthew G. Knepley for (f = 0; f < Nf; ++f) {lintegral[f] = 0.0;} 98273d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 98373d901b8SMatthew G. Knepley PetscScalar *x = NULL; 98473d901b8SMatthew G. Knepley PetscInt i; 98573d901b8SMatthew G. Knepley 986b5a3613cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, cgeomFEM[c].v0, cgeomFEM[c].J, cgeomFEM[c].invJ, &cgeomFEM[c].detJ);CHKERRQ(ierr); 987b5a3613cSMatthew G. Knepley if (cgeomFEM[c].detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", cgeomFEM[c].detJ, c); 98873d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 9890f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 99073d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 99173d901b8SMatthew G. Knepley if (dmAux) { 99273d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 9930f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 99473d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 99573d901b8SMatthew G. Knepley } 99673d901b8SMatthew G. Knepley } 99773d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 998c1f031eeSMatthew G. Knepley PetscObject obj; 999c1f031eeSMatthew G. Knepley PetscClassId id; 1000c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 100173d901b8SMatthew G. Knepley 1002c1f031eeSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1003c1f031eeSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1004c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1005c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1006c1f031eeSMatthew G. Knepley PetscQuadrature q; 1007c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 1008c1f031eeSMatthew G. Knepley 10090f2d7e86SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 1010c1f031eeSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 1011c1f031eeSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 1012c1f031eeSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 1013c1f031eeSMatthew G. Knepley blockSize = Nb*Nq; 101473d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 10150f2d7e86SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 101673d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 101773d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 101873d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 101973d901b8SMatthew G. Knepley offset = numCells - Nr; 1020b5a3613cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Ne, cgeomFEM, u, probAux, a, lintegral);CHKERRQ(ierr); 1021b5a3613cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Nr, &cgeomFEM[offset], &u[offset*totDim], probAux, &a[offset*totDimAux], lintegral);CHKERRQ(ierr); 1022c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1023b69edc29SMatthew G. Knepley /* PetscFV fv = (PetscFV) obj; */ 1024c1f031eeSMatthew G. Knepley PetscInt foff; 1025420e96edSMatthew G. Knepley PetscPointFunc obj_func; 1026b69edc29SMatthew G. Knepley PetscScalar lint; 1027c1f031eeSMatthew G. Knepley 1028c1f031eeSMatthew G. Knepley ierr = PetscDSGetObjective(prob, f, &obj_func);CHKERRQ(ierr); 1029c1f031eeSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, f, &foff);CHKERRQ(ierr); 1030c1f031eeSMatthew G. Knepley if (obj_func) { 1031c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 1032b5a3613cSMatthew G. Knepley PetscScalar *u_x; 1033b5a3613cSMatthew G. Knepley 1034b5a3613cSMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x);CHKERRQ(ierr); 1035b5a3613cSMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, a, NULL, NULL, 0.0, cgeomFVM[c].centroid, &lint); 1036b5a3613cSMatthew G. Knepley lintegral[f] += PetscRealPart(lint)*cgeomFVM[c].volume; 103773d901b8SMatthew G. Knepley } 1038c1f031eeSMatthew G. Knepley } 1039c1f031eeSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 1040c1f031eeSMatthew G. Knepley } 1041b5a3613cSMatthew G. Knepley if (useFVM) { 1042b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1043b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr); 1044b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1045b5a3613cSMatthew G. Knepley ierr = DMRestoreLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1046b5a3613cSMatthew G. Knepley ierr = VecDestroy(&faceGeometryFVM);CHKERRQ(ierr); 1047b5a3613cSMatthew G. Knepley ierr = VecDestroy(&cellGeometryFVM);CHKERRQ(ierr); 1048b5a3613cSMatthew G. Knepley ierr = DMDestroy(&dmGrad);CHKERRQ(ierr); 1049b5a3613cSMatthew G. Knepley } 105073d901b8SMatthew G. Knepley if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);} 105173d901b8SMatthew G. Knepley if (mesh->printFEM) { 105273d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Local integral:");CHKERRQ(ierr); 1053c1f031eeSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", lintegral[f]);CHKERRQ(ierr);} 105473d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr); 105573d901b8SMatthew G. Knepley } 105673d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1057b2566f29SBarry Smith ierr = MPIU_Allreduce(lintegral, integral, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject) dm));CHKERRQ(ierr); 1058b5a3613cSMatthew G. Knepley ierr = PetscFree3(lintegral,u,cgeomFEM);CHKERRQ(ierr); 1059c1f031eeSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 106073d901b8SMatthew G. Knepley PetscFunctionReturn(0); 106173d901b8SMatthew G. Knepley } 106273d901b8SMatthew G. Knepley 106373d901b8SMatthew G. Knepley #undef __FUNCT__ 106468132eb9SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInterpolatorNested" 1065d69c5d34SMatthew G. Knepley /*@ 106668132eb9SMatthew G. Knepley DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM. 1067d69c5d34SMatthew G. Knepley 1068d69c5d34SMatthew G. Knepley Input Parameters: 1069d69c5d34SMatthew G. Knepley + dmf - The fine mesh 1070d69c5d34SMatthew G. Knepley . dmc - The coarse mesh 1071d69c5d34SMatthew G. Knepley - user - The user context 1072d69c5d34SMatthew G. Knepley 1073d69c5d34SMatthew G. Knepley Output Parameter: 1074934789fcSMatthew G. Knepley . In - The interpolation matrix 1075d69c5d34SMatthew G. Knepley 1076d69c5d34SMatthew G. Knepley Level: developer 1077d69c5d34SMatthew G. Knepley 107868132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 1079d69c5d34SMatthew G. Knepley @*/ 108068132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, Mat In, void *user) 1081d69c5d34SMatthew G. Knepley { 1082d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 1083d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 10842764a2aaSMatthew G. Knepley PetscDS prob; 1085d69c5d34SMatthew G. Knepley PetscFE *feRef; 108697c42addSMatthew G. Knepley PetscFV *fvRef; 1087d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 1088d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 1089d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 10909ac3fadcSMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, cEndInterior, c; 10910f2d7e86SMatthew G. Knepley PetscInt cTotDim, rTotDim = 0; 1092d69c5d34SMatthew G. Knepley PetscErrorCode ierr; 1093d69c5d34SMatthew G. Knepley 1094d69c5d34SMatthew G. Knepley PetscFunctionBegin; 1095d69c5d34SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1096c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 1097d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 1098d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 1099d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 1100d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 1101d69c5d34SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 1102d69c5d34SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 11039ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 11049ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 11052764a2aaSMatthew G. Knepley ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr); 110697c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 1107d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 110897c42addSMatthew G. Knepley PetscObject obj; 110997c42addSMatthew G. Knepley PetscClassId id; 1110aa7890ccSMatthew G. Knepley PetscInt rNb = 0, Nc = 0; 1111d69c5d34SMatthew G. Knepley 111297c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 111397c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 111497c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 111597c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 111697c42addSMatthew G. Knepley 11170f2d7e86SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 1118d69c5d34SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr); 11190f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 112097c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 112197c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 112297c42addSMatthew G. Knepley PetscDualSpace Q; 112397c42addSMatthew G. Knepley 112497c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 112597c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 112697c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &rNb);CHKERRQ(ierr); 112797c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 112897c42addSMatthew G. Knepley } 11290f2d7e86SMatthew G. Knepley rTotDim += rNb*Nc; 1130d69c5d34SMatthew G. Knepley } 11312764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 11320f2d7e86SMatthew G. Knepley ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr); 11330f2d7e86SMatthew G. Knepley ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr); 1134d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 1135d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 1136d69c5d34SMatthew G. Knepley PetscQuadrature f; 1137d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 1138d69c5d34SMatthew G. Knepley PetscReal *points; 1139d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 1140d69c5d34SMatthew G. Knepley 1141d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 114297c42addSMatthew G. Knepley if (feRef[fieldI]) { 1143d69c5d34SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr); 11440f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr); 114597c42addSMatthew G. Knepley } else { 114697c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[fieldI], &Qref);CHKERRQ(ierr); 114797c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[fieldI], &Nc);CHKERRQ(ierr); 114897c42addSMatthew G. Knepley } 1149d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr); 1150d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 1151d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1152d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, NULL);CHKERRQ(ierr); 1153d69c5d34SMatthew G. Knepley npoints += Np; 1154d69c5d34SMatthew G. Knepley } 1155d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr); 1156d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1157d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1158d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 1159d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 1160d69c5d34SMatthew G. Knepley } 1161d69c5d34SMatthew G. Knepley 1162d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 116397c42addSMatthew G. Knepley PetscObject obj; 116497c42addSMatthew G. Knepley PetscClassId id; 1165d69c5d34SMatthew G. Knepley PetscReal *B; 1166aa7890ccSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j; 1167d69c5d34SMatthew G. Knepley 116897c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldJ, &obj);CHKERRQ(ierr); 116997c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 117097c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 117197c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1172d69c5d34SMatthew G. Knepley 1173d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 11740f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr); 11750f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 1176ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 1177ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 11787c927364SMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 11790f2d7e86SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr); 1180d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1181d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1182d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 1183d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 118436a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 11850f2d7e86SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p]; 118636a6d9c0SMatthew G. Knepley } 1187d69c5d34SMatthew G. Knepley } 1188d69c5d34SMatthew G. Knepley } 11890f2d7e86SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 1190ffe73a53SMatthew G. Knepley } 119197c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 119297c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 119397c42addSMatthew G. Knepley 119497c42addSMatthew G. Knepley /* Evaluate constant function at points */ 119597c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &NcJ);CHKERRQ(ierr); 119697c42addSMatthew G. Knepley cpdim = 1; 119797c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 119897c42addSMatthew G. Knepley if (fieldI == fieldJ) { 119997c42addSMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 120097c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 120197c42addSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 120297c42addSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 120397c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 120497c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 120597c42addSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += 1.0*qweights[p]; 120697c42addSMatthew G. Knepley } 120797c42addSMatthew G. Knepley } 120897c42addSMatthew G. Knepley } 120997c42addSMatthew G. Knepley } 121097c42addSMatthew G. Knepley } 121136a6d9c0SMatthew G. Knepley offsetJ += cpdim*NcJ; 1212d69c5d34SMatthew G. Knepley } 1213d69c5d34SMatthew G. Knepley offsetI += fpdim*Nc; 1214549a8adaSMatthew G. Knepley ierr = PetscFree(points);CHKERRQ(ierr); 1215d69c5d34SMatthew G. Knepley } 12160f2d7e86SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);} 12177f5b169aSMatthew G. Knepley /* Preallocate matrix */ 12187f5b169aSMatthew G. Knepley { 1219c094ef40SMatthew G. Knepley Mat preallocator; 1220c094ef40SMatthew G. Knepley PetscScalar *vals; 1221c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 1222c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 12237f5b169aSMatthew G. Knepley 1224c094ef40SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, &locCols);CHKERRQ(ierr); 1225c094ef40SMatthew G. Knepley ierr = MatCreate(PetscObjectComm((PetscObject) In), &preallocator);CHKERRQ(ierr); 1226c094ef40SMatthew G. Knepley ierr = MatSetType(preallocator, MATPREALLOCATOR);CHKERRQ(ierr); 1227c094ef40SMatthew G. Knepley ierr = MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 1228c094ef40SMatthew G. Knepley ierr = MatSetUp(preallocator);CHKERRQ(ierr); 1229c094ef40SMatthew G. Knepley ierr = PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr); 12307f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 12317f5b169aSMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr); 1232c094ef40SMatthew G. Knepley ierr = MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES);CHKERRQ(ierr); 12337f5b169aSMatthew G. Knepley } 1234c094ef40SMatthew G. Knepley ierr = PetscFree3(vals,cellCIndices,cellFIndices);CHKERRQ(ierr); 1235c094ef40SMatthew G. Knepley ierr = MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1236c094ef40SMatthew G. Knepley ierr = MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1237c094ef40SMatthew G. Knepley ierr = MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In);CHKERRQ(ierr); 1238c094ef40SMatthew G. Knepley ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 12397f5b169aSMatthew G. Knepley } 12407f5b169aSMatthew G. Knepley /* Fill matrix */ 12417f5b169aSMatthew G. Knepley ierr = MatZeroEntries(In);CHKERRQ(ierr); 1242d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1243934789fcSMatthew G. Knepley ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr); 1244d69c5d34SMatthew G. Knepley } 1245549a8adaSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 124697c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 1247549a8adaSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 1248934789fcSMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1249934789fcSMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1250d69c5d34SMatthew G. Knepley if (mesh->printFEM) { 1251d69c5d34SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_WORLD, "%s:\n", name);CHKERRQ(ierr); 1252934789fcSMatthew G. Knepley ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr); 1253934789fcSMatthew G. Knepley ierr = MatView(In, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1254d69c5d34SMatthew G. Knepley } 1255d69c5d34SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1256d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 1257d69c5d34SMatthew G. Knepley } 12586c73c22cSMatthew G. Knepley 12596c73c22cSMatthew G. Knepley #undef __FUNCT__ 126068132eb9SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInterpolatorGeneral" 126168132eb9SMatthew G. Knepley /*@ 126268132eb9SMatthew G. Knepley DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM. 126368132eb9SMatthew G. Knepley 126468132eb9SMatthew G. Knepley Input Parameters: 126568132eb9SMatthew G. Knepley + dmf - The fine mesh 126668132eb9SMatthew G. Knepley . dmc - The coarse mesh 126768132eb9SMatthew G. Knepley - user - The user context 126868132eb9SMatthew G. Knepley 126968132eb9SMatthew G. Knepley Output Parameter: 127068132eb9SMatthew G. Knepley . In - The interpolation matrix 127168132eb9SMatthew G. Knepley 127268132eb9SMatthew G. Knepley Level: developer 127368132eb9SMatthew G. Knepley 127468132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 127568132eb9SMatthew G. Knepley @*/ 127668132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 12774ef9d792SMatthew G. Knepley { 127864e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 127964e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 12804ef9d792SMatthew G. Knepley PetscDS prob; 12814ef9d792SMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 12824ef9d792SMatthew G. Knepley PetscHashJK ht; 12834ef9d792SMatthew G. Knepley PetscLayout rLayout; 12844ef9d792SMatthew G. Knepley PetscInt *dnz, *onz; 12854ef9d792SMatthew G. Knepley PetscInt locRows, rStart, rEnd; 12864ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 12874ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 12884ef9d792SMatthew G. Knepley PetscScalar *elemMat; 12894ef9d792SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 12904ef9d792SMatthew G. Knepley PetscErrorCode ierr; 12914ef9d792SMatthew G. Knepley 12924ef9d792SMatthew G. Knepley PetscFunctionBegin; 129377711781SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 12944ef9d792SMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 12954ef9d792SMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 12964ef9d792SMatthew G. Knepley ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr); 12974ef9d792SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 12984ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 12994ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 13004ef9d792SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 13014ef9d792SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 13024ef9d792SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 13034ef9d792SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 13044ef9d792SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 13054ef9d792SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 13064ef9d792SMatthew G. Knepley ierr = PetscMalloc1(totDim*totDim, &elemMat);CHKERRQ(ierr); 13074ef9d792SMatthew G. Knepley 13084ef9d792SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr); 13094ef9d792SMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr); 13104ef9d792SMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 13114ef9d792SMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 13124ef9d792SMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 13134ef9d792SMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 13144ef9d792SMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 13154ef9d792SMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 13164ef9d792SMatthew G. Knepley ierr = PetscHashJKCreate(&ht);CHKERRQ(ierr); 13174ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 13184ef9d792SMatthew G. Knepley PetscObject obj; 13194ef9d792SMatthew G. Knepley PetscClassId id; 1320c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 13214ef9d792SMatthew G. Knepley PetscQuadrature f; 132217f047d8SMatthew G. Knepley const PetscReal *qpoints; 132317f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 13244ef9d792SMatthew G. Knepley 13254ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 13264ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 13274ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 13284ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 13294ef9d792SMatthew G. Knepley 13304ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 13314ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 13324ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 13334ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 13344ef9d792SMatthew G. Knepley 13354ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 13364ef9d792SMatthew G. Knepley Nc = 1; 13374ef9d792SMatthew G. Knepley } 13384ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 13394ef9d792SMatthew G. Knepley /* For each fine grid cell */ 13404ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 13414ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 13424ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 13434ef9d792SMatthew G. Knepley 13446ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 13454ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 13464ef9d792SMatthew G. Knepley if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc); 13474ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 13484ef9d792SMatthew G. Knepley Vec pointVec; 13494ef9d792SMatthew G. Knepley PetscScalar *pV; 13503a93e3b7SToby Isaac PetscSF coarseCellSF = NULL; 13513a93e3b7SToby Isaac const PetscSFNode *coarseCells; 13524ef9d792SMatthew G. Knepley PetscInt numCoarseCells, q, r, c; 13534ef9d792SMatthew G. Knepley 13544ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 13554ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 13564ef9d792SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 13574ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 13584ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 13594ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 13604ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 13614ef9d792SMatthew G. Knepley /* Transform point to real space */ 13624ef9d792SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x); 13634ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 13644ef9d792SMatthew G. Knepley } 13654ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 13664ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 136762a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 13683a93e3b7SToby Isaac ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 13694ef9d792SMatthew G. Knepley /* Update preallocation info */ 13703a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 13713a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 13724ef9d792SMatthew G. Knepley for (r = 0; r < Nc; ++r) { 13734ef9d792SMatthew G. Knepley PetscHashJKKey key; 13744ef9d792SMatthew G. Knepley PetscHashJKIter missing, iter; 13754ef9d792SMatthew G. Knepley 13764ef9d792SMatthew G. Knepley key.j = findices[i*Nc+r]; 13774ef9d792SMatthew G. Knepley if (key.j < 0) continue; 13784ef9d792SMatthew G. Knepley /* Get indices for coarse elements */ 13794ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 13803a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 13814ef9d792SMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 13824ef9d792SMatthew G. Knepley key.k = cindices[c]; 13834ef9d792SMatthew G. Knepley if (key.k < 0) continue; 13844ef9d792SMatthew G. Knepley ierr = PetscHashJKPut(ht, key, &missing, &iter);CHKERRQ(ierr); 13854ef9d792SMatthew G. Knepley if (missing) { 13864ef9d792SMatthew G. Knepley ierr = PetscHashJKSet(ht, iter, 1);CHKERRQ(ierr); 13874ef9d792SMatthew G. Knepley if ((key.k >= rStart) && (key.k < rEnd)) ++dnz[key.j-rStart]; 13884ef9d792SMatthew G. Knepley else ++onz[key.j-rStart]; 13894ef9d792SMatthew G. Knepley } 13904ef9d792SMatthew G. Knepley } 13913a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 13924ef9d792SMatthew G. Knepley } 13934ef9d792SMatthew G. Knepley } 13943a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 13954ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 13964ef9d792SMatthew G. Knepley } 139746bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 13984ef9d792SMatthew G. Knepley } 13994ef9d792SMatthew G. Knepley } 14004ef9d792SMatthew G. Knepley ierr = PetscHashJKDestroy(&ht);CHKERRQ(ierr); 14014ef9d792SMatthew G. Knepley ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 14024ef9d792SMatthew G. Knepley ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 14034ef9d792SMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 14044ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 14054ef9d792SMatthew G. Knepley PetscObject obj; 14064ef9d792SMatthew G. Knepley PetscClassId id; 1407c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 14084ef9d792SMatthew G. Knepley PetscQuadrature f; 14094ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 141017f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 14114ef9d792SMatthew G. Knepley 14124ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 14134ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 14144ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 14154ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 14164ef9d792SMatthew G. Knepley 14174ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 14184ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 14194ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 14204ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 14214ef9d792SMatthew G. Knepley 14224ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 14234ef9d792SMatthew G. Knepley Nc = 1; 14244ef9d792SMatthew G. Knepley } 14254ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 14264ef9d792SMatthew G. Knepley /* For each fine grid cell */ 14274ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 14284ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 14294ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 14304ef9d792SMatthew G. Knepley 14316ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 14324ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 14334ef9d792SMatthew G. Knepley if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc); 14344ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 14354ef9d792SMatthew G. Knepley Vec pointVec; 14364ef9d792SMatthew G. Knepley PetscScalar *pV; 143712111d7cSToby Isaac PetscSF coarseCellSF = NULL; 14383a93e3b7SToby Isaac const PetscSFNode *coarseCells; 143917f047d8SMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 14404ef9d792SMatthew G. Knepley 14414ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 14424ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 14434ef9d792SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, &qweights);CHKERRQ(ierr); 14444ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 14454ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 14464ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 14474ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 14484ef9d792SMatthew G. Knepley /* Transform point to real space */ 14494ef9d792SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x); 14504ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 14514ef9d792SMatthew G. Knepley } 14524ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 14534ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 145462a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 14554ef9d792SMatthew G. Knepley /* Update preallocation info */ 14563a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 14573a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 14584ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 14594ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 1460826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 1461826eb36dSMatthew G. Knepley 14623a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 14634ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 14643a93e3b7SToby Isaac ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 1465e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 1466826eb36dSMatthew G. Knepley CoordinatesRealToRef(dim, dim, v0c, invJc, pVReal, x); 14674ef9d792SMatthew G. Knepley 14684ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 14694ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 14704ef9d792SMatthew G. Knepley PetscReal *B; 14714ef9d792SMatthew G. Knepley 14724ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 14734ef9d792SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 14744ef9d792SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr); 1475bdeb5f8fSMatthew G. Knepley ierr = PetscMemzero(elemMat, cpdim*Nc*Nc * sizeof(PetscScalar));CHKERRQ(ierr); 14764ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 14774ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 14784ef9d792SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = B[j*Nc + c]*qweights[ccell]; 14794ef9d792SMatthew G. Knepley } 14804ef9d792SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 14814ef9d792SMatthew G. Knepley } else { 14824ef9d792SMatthew G. Knepley cpdim = 1; 14834ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 14844ef9d792SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = 1.0*qweights[ccell]; 14854ef9d792SMatthew G. Knepley } 14864ef9d792SMatthew G. Knepley } 14874ef9d792SMatthew G. Knepley /* Update interpolator */ 148864e98e1dSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, Nc, numCIndices, elemMat);CHKERRQ(ierr);} 1489bdeb5f8fSMatthew G. Knepley if (numCIndices != cpdim*Nc) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D*%D", numCIndices, cpdim, Nc); 14904ef9d792SMatthew G. Knepley ierr = MatSetValues(In, Nc, &findices[i*Nc], numCIndices, cindices, elemMat, INSERT_VALUES);CHKERRQ(ierr); 14913a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 14924ef9d792SMatthew G. Knepley } 14934ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 14943a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 14954ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 14964ef9d792SMatthew G. Knepley } 149746bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 14984ef9d792SMatthew G. Knepley } 14994ef9d792SMatthew G. Knepley } 15004ef9d792SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 15014ef9d792SMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 15024ef9d792SMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 15034ef9d792SMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15044ef9d792SMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 150577711781SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 15064ef9d792SMatthew G. Knepley PetscFunctionReturn(0); 15074ef9d792SMatthew G. Knepley } 15084ef9d792SMatthew G. Knepley 15094ef9d792SMatthew G. Knepley #undef __FUNCT__ 15107c927364SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInjectorFEM" 15117c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 15127c927364SMatthew G. Knepley { 1513e9d4ef1bSMatthew G. Knepley PetscDS prob; 15147c927364SMatthew G. Knepley PetscFE *feRef; 151597c42addSMatthew G. Knepley PetscFV *fvRef; 15167c927364SMatthew G. Knepley Vec fv, cv; 15177c927364SMatthew G. Knepley IS fis, cis; 15187c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 15197c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 15200bd915a7SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, cEndInterior, c, dim, d, startC, endC, offsetC, offsetF, m; 15217c927364SMatthew G. Knepley PetscErrorCode ierr; 15227c927364SMatthew G. Knepley 15237c927364SMatthew G. Knepley PetscFunctionBegin; 152475a69067SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1525c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 15267c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 15277c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 15287c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 15297c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 15307c927364SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 15317c927364SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 15329ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 15339ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 1534e9d4ef1bSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 153597c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 15367c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 153797c42addSMatthew G. Knepley PetscObject obj; 153897c42addSMatthew G. Knepley PetscClassId id; 1539aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 15407c927364SMatthew G. Knepley 154197c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 154297c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 154397c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 154497c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 154597c42addSMatthew G. Knepley 15467c927364SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 15477c927364SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr); 15487c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 154997c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 155097c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 155197c42addSMatthew G. Knepley PetscDualSpace Q; 155297c42addSMatthew G. Knepley 155397c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 155497c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 155597c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fNb);CHKERRQ(ierr); 155697c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 155797c42addSMatthew G. Knepley } 15587c927364SMatthew G. Knepley fTotDim += fNb*Nc; 15597c927364SMatthew G. Knepley } 1560e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 15617c927364SMatthew G. Knepley ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr); 15627c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 15637c927364SMatthew G. Knepley PetscFE feC; 156497c42addSMatthew G. Knepley PetscFV fvC; 15657c927364SMatthew G. Knepley PetscDualSpace QF, QC; 15667c927364SMatthew G. Knepley PetscInt NcF, NcC, fpdim, cpdim; 15677c927364SMatthew G. Knepley 156897c42addSMatthew G. Knepley if (feRef[field]) { 1569e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr); 15707c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr); 15717c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr); 15727c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr); 15737c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 15747c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr); 15757c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 157697c42addSMatthew G. Knepley } else { 157797c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC);CHKERRQ(ierr); 157897c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvC, &NcC);CHKERRQ(ierr); 157997c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[field], &NcF);CHKERRQ(ierr); 158097c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[field], &QF);CHKERRQ(ierr); 158197c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 158297c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvC, &QC);CHKERRQ(ierr); 158397c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 158497c42addSMatthew G. Knepley } 158597c42addSMatthew G. Knepley if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC); 15867c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 15877c927364SMatthew G. Knepley PetscQuadrature cfunc; 15887c927364SMatthew G. Knepley const PetscReal *cqpoints; 15897c927364SMatthew G. Knepley PetscInt NpC; 159097c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 15917c927364SMatthew G. Knepley 15927c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr); 15937c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(cfunc, NULL, &NpC, &cqpoints, NULL);CHKERRQ(ierr); 159497c42addSMatthew G. Knepley if (NpC != 1 && feRef[field]) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 15957c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 15967c927364SMatthew G. Knepley PetscQuadrature ffunc; 15977c927364SMatthew G. Knepley const PetscReal *fqpoints; 15987c927364SMatthew G. Knepley PetscReal sum = 0.0; 15997c927364SMatthew G. Knepley PetscInt NpF, comp; 16007c927364SMatthew G. Knepley 16017c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr); 16027c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(ffunc, NULL, &NpF, &fqpoints, NULL);CHKERRQ(ierr); 16037c927364SMatthew G. Knepley if (NpC != NpF) continue; 16047c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 16057c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 16067c927364SMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 16077c927364SMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+f)*NcF+comp; 16087c927364SMatthew G. Knepley } 160997c42addSMatthew G. Knepley found = PETSC_TRUE; 16107c927364SMatthew G. Knepley break; 16117c927364SMatthew G. Knepley } 161297c42addSMatthew G. Knepley if (!found) { 161397c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 161497c42addSMatthew G. Knepley if (fvRef[field]) { 161597c42addSMatthew G. Knepley PetscInt comp; 161697c42addSMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 161797c42addSMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+0)*NcF+comp; 161897c42addSMatthew G. Knepley } 161997c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 162097c42addSMatthew G. Knepley } 16217c927364SMatthew G. Knepley } 16227c927364SMatthew G. Knepley offsetC += cpdim*NcC; 16237c927364SMatthew G. Knepley offsetF += fpdim*NcF; 16247c927364SMatthew G. Knepley } 162597c42addSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);ierr = PetscFVDestroy(&fvRef[f]);CHKERRQ(ierr);} 162697c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 16277c927364SMatthew G. Knepley 16287c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr); 16297c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr); 16300bd915a7SMatthew G. Knepley ierr = VecGetOwnershipRange(cv, &startC, &endC);CHKERRQ(ierr); 16317c927364SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr); 16327c927364SMatthew G. Knepley ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr); 1633aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr); 1634aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr); 16357c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 16367c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 16377c927364SMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr); 16387c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 16390bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 16407c927364SMatthew G. Knepley if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 16417c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 16427c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 16437c927364SMatthew G. Knepley } 16447c927364SMatthew G. Knepley } 16457c927364SMatthew G. Knepley ierr = PetscFree(cmap);CHKERRQ(ierr); 16467c927364SMatthew G. Knepley ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr); 16477c927364SMatthew G. Knepley 16487c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr); 16497c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr); 16507c927364SMatthew G. Knepley ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr); 16517c927364SMatthew G. Knepley ierr = ISDestroy(&cis);CHKERRQ(ierr); 16527c927364SMatthew G. Knepley ierr = ISDestroy(&fis);CHKERRQ(ierr); 16537c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr); 16547c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr); 165575a69067SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1656cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1657cb1e1211SMatthew G Knepley } 1658