1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h> 5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 8a0845e3aSMatthew G. Knepley 95f0b18bfSMatthew G. Knepley PetscBool Clementcite = PETSC_FALSE; 105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n" 115f0b18bfSMatthew G. Knepley " title = {Approximation by finite element functions using local regularization},\n" 125f0b18bfSMatthew G. Knepley " author = {Philippe Cl{\\'e}ment},\n" 135f0b18bfSMatthew G. Knepley " journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n" 145f0b18bfSMatthew G. Knepley " volume = {9},\n" 155f0b18bfSMatthew G. Knepley " number = {R2},\n" 165f0b18bfSMatthew G. Knepley " pages = {77--84},\n" 175f0b18bfSMatthew G. Knepley " year = {1975}\n}\n"; 185f0b18bfSMatthew G. Knepley 192f856554SMatthew G. Knepley static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 202f856554SMatthew G. Knepley { 212f856554SMatthew G. Knepley PetscBool isPlex; 222f856554SMatthew G. Knepley 232f856554SMatthew G. Knepley PetscFunctionBegin; 249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) dm, DMPLEX, &isPlex)); 252f856554SMatthew G. Knepley if (isPlex) { 262f856554SMatthew G. Knepley *plex = dm; 279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dm)); 282f856554SMatthew G. Knepley } else { 299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) dm, "dm_plex", (PetscObject *) plex)); 302f856554SMatthew G. Knepley if (!*plex) { 319566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) dm, "dm_plex", (PetscObject) *plex)); 332f856554SMatthew G. Knepley if (copy) { 342f856554SMatthew G. Knepley DMSubDomainHookLink link; 359a2a23afSMatthew G. Knepley 369566063dSJacob Faibussowitsch PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 379a2a23afSMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 382f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 399566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx)); 402f856554SMatthew G. Knepley } 412f856554SMatthew G. Knepley } 422f856554SMatthew G. Knepley } else { 439566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) *plex)); 442f856554SMatthew G. Knepley } 452f856554SMatthew G. Knepley } 462f856554SMatthew G. Knepley PetscFunctionReturn(0); 472f856554SMatthew G. Knepley } 482f856554SMatthew G. Knepley 499b6f715bSMatthew G. Knepley static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom (void *ctx) 509b6f715bSMatthew G. Knepley { 519b6f715bSMatthew G. Knepley PetscFEGeom *geom = (PetscFEGeom *) ctx; 529b6f715bSMatthew G. Knepley 539b6f715bSMatthew G. Knepley PetscFunctionBegin; 549566063dSJacob Faibussowitsch PetscCall(PetscFEGeomDestroy(&geom)); 559b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 569b6f715bSMatthew G. Knepley } 579b6f715bSMatthew G. Knepley 589b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 599b6f715bSMatthew G. Knepley { 609b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 619b6f715bSMatthew G. Knepley PetscObjectId id; 629b6f715bSMatthew G. Knepley PetscContainer container; 639b6f715bSMatthew G. Knepley 649b6f715bSMatthew G. Knepley PetscFunctionBegin; 659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad,&id)); 6663a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id)); 679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container)); 689b6f715bSMatthew G. Knepley if (container) { 699566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **) geom)); 709b6f715bSMatthew G. Knepley } else { 719566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 729566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF,&container)); 739566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *) *geom)); 749566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 759566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container)); 769566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 779b6f715bSMatthew G. Knepley } 789b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 799b6f715bSMatthew G. Knepley } 809b6f715bSMatthew G. Knepley 819b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 829b6f715bSMatthew G. Knepley { 839b6f715bSMatthew G. Knepley PetscFunctionBegin; 849b6f715bSMatthew G. Knepley *geom = NULL; 859b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 869b6f715bSMatthew G. Knepley } 879b6f715bSMatthew G. Knepley 8846fa42a0SMatthew G. Knepley /*@ 8946fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9046fa42a0SMatthew G. Knepley 9146fa42a0SMatthew G. Knepley Not collective 9246fa42a0SMatthew G. Knepley 934165533cSJose E. Roman Input Parameters: 9446fa42a0SMatthew G. Knepley + dm - the DM 9546fa42a0SMatthew G. Knepley - unit - The SI unit 9646fa42a0SMatthew G. Knepley 974165533cSJose E. Roman Output Parameter: 9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 9946fa42a0SMatthew G. Knepley 10046fa42a0SMatthew G. Knepley Level: advanced 10146fa42a0SMatthew G. Knepley 102db781477SPatrick Sanan .seealso: `DMPlexSetScale()`, `PetscUnit` 10346fa42a0SMatthew G. Knepley @*/ 104cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 105cb1e1211SMatthew G Knepley { 106cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 107cb1e1211SMatthew G Knepley 108cb1e1211SMatthew G Knepley PetscFunctionBegin; 109cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 110dadcf809SJacob Faibussowitsch PetscValidRealPointer(scale, 3); 111cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 112cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 113cb1e1211SMatthew G Knepley } 114cb1e1211SMatthew G Knepley 11546fa42a0SMatthew G. Knepley /*@ 11646fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11746fa42a0SMatthew G. Knepley 11846fa42a0SMatthew G. Knepley Not collective 11946fa42a0SMatthew G. Knepley 1204165533cSJose E. Roman Input Parameters: 12146fa42a0SMatthew G. Knepley + dm - the DM 12246fa42a0SMatthew G. Knepley . unit - The SI unit 12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12446fa42a0SMatthew G. Knepley 12546fa42a0SMatthew G. Knepley Level: advanced 12646fa42a0SMatthew G. Knepley 127db781477SPatrick Sanan .seealso: `DMPlexGetScale()`, `PetscUnit` 12846fa42a0SMatthew G. Knepley @*/ 129cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 130cb1e1211SMatthew G Knepley { 131cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 132cb1e1211SMatthew G Knepley 133cb1e1211SMatthew G Knepley PetscFunctionBegin; 134cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 135cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 136cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 137cb1e1211SMatthew G Knepley } 138cb1e1211SMatthew G Knepley 139327779f2SMatthew Knepley static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx) 140026175e5SToby Isaac { 14112adca46SMatthew G. Knepley const PetscInt eps[3][3][3] = {{{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, {{0, 0, -1}, {0, 0, 0}, {1, 0, 0}}, {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0}}}; 142026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *) ctx; 143ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 144026175e5SToby Isaac PetscInt d = ctxInt[1]; 145026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 146026175e5SToby Isaac 147ad917190SMatthew G. Knepley PetscFunctionBegin; 14863a3b9bcSJacob Faibussowitsch PetscCheck(dim == dim2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2); 149026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 150026175e5SToby Isaac if (d < dim) { 15112adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 152ad917190SMatthew G. Knepley } else { 153026175e5SToby Isaac for (i = 0; i < dim; i++) { 154026175e5SToby Isaac for (j = 0; j < dim; j++) { 15512adca46SMatthew G. Knepley mode[j] += eps[i][j][k]*X[i]; /* Rotation about axis d */ 156026175e5SToby Isaac } 157026175e5SToby Isaac } 158026175e5SToby Isaac } 159ad917190SMatthew G. Knepley PetscFunctionReturn(0); 160026175e5SToby Isaac } 161026175e5SToby Isaac 162cc4e42d9SMartin Diehl /*@ 16312adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 164cb1e1211SMatthew G Knepley 165d083f849SBarry Smith Collective on dm 166cb1e1211SMatthew G Knepley 1674165533cSJose E. Roman Input Parameters: 16856cf3b9cSMatthew G. Knepley + dm - the DM 16956cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default 170cb1e1211SMatthew G Knepley 1714165533cSJose E. Roman Output Parameter: 172cb1e1211SMatthew G Knepley . sp - the null space 173cb1e1211SMatthew G Knepley 17412adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 175cb1e1211SMatthew G Knepley 176cb1e1211SMatthew G Knepley Level: advanced 177cb1e1211SMatthew G Knepley 178db781477SPatrick Sanan .seealso: `MatNullSpaceCreate()`, `PCGAMG` 179cb1e1211SMatthew G Knepley @*/ 18056cf3b9cSMatthew G. Knepley PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp) 181cb1e1211SMatthew G Knepley { 18256cf3b9cSMatthew G. Knepley PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *); 183cb1e1211SMatthew G Knepley MPI_Comm comm; 184026175e5SToby Isaac Vec mode[6]; 185026175e5SToby Isaac PetscSection section, globalSection; 18656cf3b9cSMatthew G. Knepley PetscInt dim, dimEmbed, Nf, n, m, mmin, d, i, j; 187cb1e1211SMatthew G Knepley 188cb1e1211SMatthew G Knepley PetscFunctionBegin; 1899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 1909566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1919566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 1929566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 19363a3b9bcSJacob Faibussowitsch PetscCheck(!Nf || !(field < 0 || field >= Nf),comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf); 19456cf3b9cSMatthew G. Knepley if (dim == 1 && Nf < 2) { 1959566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp)); 196cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 197cb1e1211SMatthew G Knepley } 1989566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 1999566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 2009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 2019566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nf, &func)); 202b247467aSMatthew G. Knepley m = (dim*(dim+1))/2; 2039566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 2049566063dSJacob Faibussowitsch PetscCall(VecSetType(mode[0], dm->vectype)); 2059566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 2069566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 2079566063dSJacob Faibussowitsch PetscCall(VecGetSize(mode[0], &n)); 208b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 20956cf3b9cSMatthew G. Knepley func[field] = DMPlexProjectRigidBody_Private; 2109566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 211026175e5SToby Isaac for (d = 0; d < m; d++) { 212330485fdSToby Isaac PetscInt ctx[2]; 213026175e5SToby Isaac void *voidctx = (void *) (&ctx[0]); 214cb1e1211SMatthew G Knepley 2159d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 216330485fdSToby Isaac ctx[1] = d; 2179566063dSJacob Faibussowitsch PetscCall(DMProjectFunction(dm, 0.0, func, &voidctx, INSERT_VALUES, mode[d])); 218cb1e1211SMatthew G Knepley } 2193b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 220b50a2c0aSJacob Faibussowitsch for (i = 0; i < mmin; ++i) { 221b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 222b50a2c0aSJacob Faibussowitsch 2239566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 2249566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], mmin-i-1, mode+i+1, dots+i+1)); 225b50a2c0aSJacob Faibussowitsch for (j = i+1; j < mmin; ++j) { 226b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 2279566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 228b50a2c0aSJacob Faibussowitsch } 229cb1e1211SMatthew G Knepley } 2309566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp)); 2319566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 2329566063dSJacob Faibussowitsch PetscCall(PetscFree(func)); 233cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 234cb1e1211SMatthew G Knepley } 235cb1e1211SMatthew G Knepley 236cc4e42d9SMartin Diehl /*@ 23712adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 23812adca46SMatthew G. Knepley 239d083f849SBarry Smith Collective on dm 24012adca46SMatthew G. Knepley 2414165533cSJose E. Roman Input Parameters: 24212adca46SMatthew G. Knepley + dm - the DM 24312adca46SMatthew G. Knepley . nb - The number of bodies 24412adca46SMatthew G. Knepley . label - The DMLabel marking each domain 24512adca46SMatthew G. Knepley . nids - The number of ids per body 24612adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 24712adca46SMatthew G. Knepley 2484165533cSJose E. Roman Output Parameter: 24912adca46SMatthew G. Knepley . sp - the null space 25012adca46SMatthew G. Knepley 25112adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 25212adca46SMatthew G. Knepley 25312adca46SMatthew G. Knepley Level: advanced 25412adca46SMatthew G. Knepley 255db781477SPatrick Sanan .seealso: `MatNullSpaceCreate()` 25612adca46SMatthew G. Knepley @*/ 25712adca46SMatthew G. Knepley PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 25812adca46SMatthew G. Knepley { 25912adca46SMatthew G. Knepley MPI_Comm comm; 26012adca46SMatthew G. Knepley PetscSection section, globalSection; 26112adca46SMatthew G. Knepley Vec *mode; 26212adca46SMatthew G. Knepley PetscScalar *dots; 26312adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 26412adca46SMatthew G. Knepley 26512adca46SMatthew G. Knepley PetscFunctionBegin; 2669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 2679566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 2689566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 2699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 2709566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 2719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 27212adca46SMatthew G. Knepley m = nb * (dim*(dim+1))/2; 2739566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &mode, m, &dots)); 2749566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 2759566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 2769566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 2779566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 27812adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 27912adca46SMatthew G. Knepley for (d = 0; d < m/nb; ++d) { 28012adca46SMatthew G. Knepley PetscInt ctx[2]; 28112adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 28212adca46SMatthew G. Knepley void *voidctx = (void *) (&ctx[0]); 28312adca46SMatthew G. Knepley 28412adca46SMatthew G. Knepley ctx[0] = dimEmbed; 28512adca46SMatthew G. Knepley ctx[1] = d; 2869566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d])); 28712adca46SMatthew G. Knepley off += nids[b]; 28812adca46SMatthew G. Knepley } 28912adca46SMatthew G. Knepley } 2903b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 291606c1a1cSJacob Faibussowitsch for (i = 0; i < m; ++i) { 292b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 2935a0e29b9SJacob Faibussowitsch 2949566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 2959566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], m-i-1, mode+i+1, dots+i+1)); 2965a0e29b9SJacob Faibussowitsch for (j = i+1; j < m; ++j) { 297b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 2989566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 2995a0e29b9SJacob Faibussowitsch } 30012adca46SMatthew G. Knepley } 3019566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp)); 3029566063dSJacob Faibussowitsch for (i = 0; i< m; ++i) PetscCall(VecDestroy(&mode[i])); 3039566063dSJacob Faibussowitsch PetscCall(PetscFree2(mode, dots)); 30412adca46SMatthew G. Knepley PetscFunctionReturn(0); 30512adca46SMatthew G. Knepley } 30612adca46SMatthew G. Knepley 307b29cfa1cSToby Isaac /*@ 308b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 309b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 310b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 311b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 312b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 313b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 314b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 315b29cfa1cSToby Isaac 316b29cfa1cSToby Isaac Input Parameters: 317b29cfa1cSToby Isaac + dm - the DMPlex object 318b29cfa1cSToby Isaac - height - the maximum projection height >= 0 319b29cfa1cSToby Isaac 320b29cfa1cSToby Isaac Level: advanced 321b29cfa1cSToby Isaac 322db781477SPatrick Sanan .seealso: `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 323b29cfa1cSToby Isaac @*/ 324b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 325b29cfa1cSToby Isaac { 326b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 327b29cfa1cSToby Isaac 328b29cfa1cSToby Isaac PetscFunctionBegin; 329b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 330b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 331b29cfa1cSToby Isaac PetscFunctionReturn(0); 332b29cfa1cSToby Isaac } 333b29cfa1cSToby Isaac 334b29cfa1cSToby Isaac /*@ 335b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 336b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 337b29cfa1cSToby Isaac 338b29cfa1cSToby Isaac Input Parameters: 339b29cfa1cSToby Isaac . dm - the DMPlex object 340b29cfa1cSToby Isaac 341b29cfa1cSToby Isaac Output Parameters: 342b29cfa1cSToby Isaac . height - the maximum projection height 343b29cfa1cSToby Isaac 344b29cfa1cSToby Isaac Level: intermediate 345b29cfa1cSToby Isaac 346db781477SPatrick Sanan .seealso: `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 347b29cfa1cSToby Isaac @*/ 348b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 349b29cfa1cSToby Isaac { 350b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 351b29cfa1cSToby Isaac 352b29cfa1cSToby Isaac PetscFunctionBegin; 353b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 354b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 355b29cfa1cSToby Isaac PetscFunctionReturn(0); 356b29cfa1cSToby Isaac } 357b29cfa1cSToby Isaac 358ca3d3a14SMatthew G. Knepley typedef struct { 359ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 360ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 361ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 362ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 363ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 364ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 365ca3d3a14SMatthew G. Knepley } RotCtx; 366ca3d3a14SMatthew G. Knepley 367ca3d3a14SMatthew G. Knepley /* 368ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 369ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 370ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 371ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 372ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 373ca3d3a14SMatthew G. Knepley */ 374ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 375ca3d3a14SMatthew G. Knepley { 376ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 377ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 378ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 379ca3d3a14SMatthew G. Knepley 380ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 3819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT)); 382ca3d3a14SMatthew G. Knepley switch (dim) { 383ca3d3a14SMatthew G. Knepley case 2: 384ca3d3a14SMatthew G. Knepley c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha); 385ca3d3a14SMatthew G. Knepley rc->R[0] = c1;rc->R[1] = s1; 386ca3d3a14SMatthew G. Knepley rc->R[2] = -s1;rc->R[3] = c1; 3879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 388b458e8f1SJose E. Roman DMPlex_Transpose2D_Internal(rc->RT); 389ca3d3a14SMatthew G. Knepley break; 390ca3d3a14SMatthew G. Knepley case 3: 391ca3d3a14SMatthew G. Knepley c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha); 392ca3d3a14SMatthew G. Knepley c2 = PetscCosReal(rc->beta); s2 = PetscSinReal(rc->beta); 393ca3d3a14SMatthew G. Knepley c3 = PetscCosReal(rc->gamma);s3 = PetscSinReal(rc->gamma); 394ca3d3a14SMatthew G. Knepley rc->R[0] = c1*c3 - c2*s1*s3;rc->R[1] = c3*s1 + c1*c2*s3;rc->R[2] = s2*s3; 395ca3d3a14SMatthew G. Knepley rc->R[3] = -c1*s3 - c2*c3*s1;rc->R[4] = c1*c2*c3 - s1*s3; rc->R[5] = c3*s2; 396ca3d3a14SMatthew G. Knepley rc->R[6] = s1*s2; rc->R[7] = -c1*s2; rc->R[8] = c2; 3979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 398b458e8f1SJose E. Roman DMPlex_Transpose3D_Internal(rc->RT); 399ca3d3a14SMatthew G. Knepley break; 40063a3b9bcSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim); 401ca3d3a14SMatthew G. Knepley } 402ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 403ca3d3a14SMatthew G. Knepley } 404ca3d3a14SMatthew G. Knepley 405ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 406ca3d3a14SMatthew G. Knepley { 407ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 408ca3d3a14SMatthew G. Knepley 409ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 4109566063dSJacob Faibussowitsch PetscCall(PetscFree2(rc->R, rc->RT)); 4119566063dSJacob Faibussowitsch PetscCall(PetscFree(rc)); 412ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 413ca3d3a14SMatthew G. Knepley } 414ca3d3a14SMatthew G. Knepley 415ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 416ca3d3a14SMatthew G. Knepley { 417ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 418ca3d3a14SMatthew G. Knepley 419ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 420ca3d3a14SMatthew G. Knepley PetscValidPointer(ctx, 5); 421ca3d3a14SMatthew G. Knepley if (l2g) {*A = rc->R;} 422ca3d3a14SMatthew G. Knepley else {*A = rc->RT;} 423ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 424ca3d3a14SMatthew G. Knepley } 425ca3d3a14SMatthew G. Knepley 426ab6a9622SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 427ab6a9622SMatthew G. Knepley { 428ec277c0fSMatthew G. Knepley PetscFunctionBegin; 429ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 430ab6a9622SMatthew G. Knepley switch (dim) { 431ab6a9622SMatthew G. Knepley case 2: 432ab6a9622SMatthew G. Knepley { 43327104ee2SJacob Faibussowitsch PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0,0.0}; 434ab6a9622SMatthew G. Knepley 4359566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 436ab6a9622SMatthew G. Knepley z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]); 437ab6a9622SMatthew G. Knepley } 4389b4815dcSMatthew G. Knepley break; 439ab6a9622SMatthew G. Knepley case 3: 440ab6a9622SMatthew G. Knepley { 44127104ee2SJacob Faibussowitsch PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0,0.0,0.0}; 442ab6a9622SMatthew G. Knepley 4439566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 444ab6a9622SMatthew G. Knepley z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]); z[2] = PetscRealPart(zt[2]); 445ab6a9622SMatthew G. Knepley } 4469b4815dcSMatthew G. Knepley break; 447ab6a9622SMatthew G. Knepley } 448ab6a9622SMatthew G. Knepley #else 4499566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx)); 450ab6a9622SMatthew G. Knepley #endif 451ec277c0fSMatthew G. Knepley PetscFunctionReturn(0); 452ab6a9622SMatthew G. Knepley } 453ab6a9622SMatthew G. Knepley 454ec277c0fSMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 455ca3d3a14SMatthew G. Knepley { 456ca3d3a14SMatthew G. Knepley const PetscScalar *A; 457ca3d3a14SMatthew G. Knepley 458ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 4599566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx)); 460ca3d3a14SMatthew G. Knepley switch (dim) { 4611fba962aSMatthew G. Knepley case 2: DMPlex_Mult2D_Internal(A, 1, y, z);break; 4621fba962aSMatthew G. Knepley case 3: DMPlex_Mult3D_Internal(A, 1, y, z);break; 463ca3d3a14SMatthew G. Knepley } 464ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 465ca3d3a14SMatthew G. Knepley } 466ca3d3a14SMatthew G. Knepley 467ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 468ca3d3a14SMatthew G. Knepley { 469ca3d3a14SMatthew G. Knepley PetscSection ts; 470ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 471ca3d3a14SMatthew G. Knepley PetscInt dof; 472ca3d3a14SMatthew G. Knepley 473ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 4749566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 4759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 4769566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 4779566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva)); 478ca3d3a14SMatthew G. Knepley if (l2g) { 479ca3d3a14SMatthew G. Knepley switch (dof) { 4801fba962aSMatthew G. Knepley case 4: DMPlex_Mult2D_Internal(tva, 1, a, a);break; 4811fba962aSMatthew G. Knepley case 9: DMPlex_Mult3D_Internal(tva, 1, a, a);break; 482ca3d3a14SMatthew G. Knepley } 483ca3d3a14SMatthew G. Knepley } else { 484ca3d3a14SMatthew G. Knepley switch (dof) { 4851fba962aSMatthew G. Knepley case 4: DMPlex_MultTranspose2D_Internal(tva, 1, a, a);break; 4861fba962aSMatthew G. Knepley case 9: DMPlex_MultTranspose3D_Internal(tva, 1, a, a);break; 487ca3d3a14SMatthew G. Knepley } 488ca3d3a14SMatthew G. Knepley } 4899566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 490ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 491ca3d3a14SMatthew G. Knepley } 492ca3d3a14SMatthew G. Knepley 493ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 494ca3d3a14SMatthew G. Knepley { 495ca3d3a14SMatthew G. Knepley PetscSection s, ts; 496ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 497ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 498ca3d3a14SMatthew G. Knepley 499ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5009566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 5019566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 5029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof)); 5039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof)); 5049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof)); 5059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof)); 5069566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 5079566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf)); 5089566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag)); 509ca3d3a14SMatthew G. Knepley if (l2g) { 510ca3d3a14SMatthew G. Knepley switch (fdof) { 511ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);break; 512ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);break; 513ca3d3a14SMatthew G. Knepley } 514ca3d3a14SMatthew G. Knepley switch (gdof) { 515ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);break; 516ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);break; 517ca3d3a14SMatthew G. Knepley } 518ca3d3a14SMatthew G. Knepley } else { 519ca3d3a14SMatthew G. Knepley switch (fdof) { 520ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);break; 521ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);break; 522ca3d3a14SMatthew G. Knepley } 523ca3d3a14SMatthew G. Knepley switch (gdof) { 524ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);break; 525ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);break; 526ca3d3a14SMatthew G. Knepley } 527ca3d3a14SMatthew G. Knepley } 5289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 529ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 530ca3d3a14SMatthew G. Knepley } 531ca3d3a14SMatthew G. Knepley 532ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 533ca3d3a14SMatthew G. Knepley { 534ca3d3a14SMatthew G. Knepley PetscSection s; 535ca3d3a14SMatthew G. Knepley PetscSection clSection; 536ca3d3a14SMatthew G. Knepley IS clPoints; 537ca3d3a14SMatthew G. Knepley const PetscInt *clp; 538ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 539ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 540ca3d3a14SMatthew G. Knepley 541ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5429566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 5439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 5449566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 545ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 546ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np*2; cp += 2) { 5479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof)); 548ca3d3a14SMatthew G. Knepley if (!dof) continue; 5499566063dSJacob Faibussowitsch if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d])); 550ca3d3a14SMatthew G. Knepley d += dof; 551ca3d3a14SMatthew G. Knepley } 552ca3d3a14SMatthew G. Knepley } 5539566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 554ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 555ca3d3a14SMatthew G. Knepley } 556ca3d3a14SMatthew G. Knepley 557ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 558ca3d3a14SMatthew G. Knepley { 559ca3d3a14SMatthew G. Knepley PetscSection s; 560ca3d3a14SMatthew G. Knepley PetscSection clSection; 561ca3d3a14SMatthew G. Knepley IS clPoints; 562ca3d3a14SMatthew G. Knepley const PetscInt *clp; 563ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 5648bdb3c71SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0; 565ca3d3a14SMatthew G. Knepley 566ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5679566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 5689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 5699566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 570ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 571ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np*2; cpf += 2) { 5729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof)); 573ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 574ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np*2; cpg += 2) { 5759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof)); 5769566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r*lda+c])); 577ca3d3a14SMatthew G. Knepley c += gdof; 578ca3d3a14SMatthew G. Knepley } 579ca3d3a14SMatthew G. Knepley } 58063a3b9bcSJacob Faibussowitsch PetscCheck(c == lda,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 581ca3d3a14SMatthew G. Knepley r += fdof; 582ca3d3a14SMatthew G. Knepley } 583ca3d3a14SMatthew G. Knepley } 58463a3b9bcSJacob Faibussowitsch PetscCheck(r == lda,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 5859566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 586ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 587ca3d3a14SMatthew G. Knepley } 588ca3d3a14SMatthew G. Knepley 589ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 590ca3d3a14SMatthew G. Knepley { 591ca3d3a14SMatthew G. Knepley DM tdm; 592ca3d3a14SMatthew G. Knepley Vec tv; 593ca3d3a14SMatthew G. Knepley PetscSection ts, s; 594ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 595ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 596ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 597ca3d3a14SMatthew G. Knepley 598ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5999566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 6009566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 6019566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6029566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 6049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 6059566063dSJacob Faibussowitsch PetscCall(VecGetArray(lv, &a)); 6069566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 607ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 608ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 6099566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va)); 6109566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va)); 611ca3d3a14SMatthew G. Knepley } 612ca3d3a14SMatthew G. Knepley } 6139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lv, &a)); 6149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 615ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 616ca3d3a14SMatthew G. Knepley } 617ca3d3a14SMatthew G. Knepley 618ca3d3a14SMatthew G. Knepley /*@ 619ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 620ca3d3a14SMatthew G. Knepley 621ca3d3a14SMatthew G. Knepley Input Parameters: 622ca3d3a14SMatthew G. Knepley + dm - The DM 623ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 624ca3d3a14SMatthew G. Knepley 625ca3d3a14SMatthew G. Knepley Output Parameters: 626ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 627ca3d3a14SMatthew G. Knepley 628c0f8e1fdSMatthew G. Knepley Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 629c0f8e1fdSMatthew G. Knepley 630ca3d3a14SMatthew G. Knepley Level: developer 631ca3d3a14SMatthew G. Knepley 632db781477SPatrick Sanan .seealso: `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 633ca3d3a14SMatthew G. Knepley @*/ 634ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 635ca3d3a14SMatthew G. Knepley { 636ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 637ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 638ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 6399566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE)); 640ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 641ca3d3a14SMatthew G. Knepley } 642ca3d3a14SMatthew G. Knepley 643ca3d3a14SMatthew G. Knepley /*@ 644ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 645ca3d3a14SMatthew G. Knepley 646ca3d3a14SMatthew G. Knepley Input Parameters: 647ca3d3a14SMatthew G. Knepley + dm - The DM 648ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 649ca3d3a14SMatthew G. Knepley 650ca3d3a14SMatthew G. Knepley Output Parameters: 651ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 652ca3d3a14SMatthew G. Knepley 653c0f8e1fdSMatthew G. Knepley Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 654c0f8e1fdSMatthew G. Knepley 655ca3d3a14SMatthew G. Knepley Level: developer 656ca3d3a14SMatthew G. Knepley 657db781477SPatrick Sanan .seealso: `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 658ca3d3a14SMatthew G. Knepley @*/ 659ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 660ca3d3a14SMatthew G. Knepley { 661ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 662ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 663ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 6649566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE)); 665ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 666ca3d3a14SMatthew G. Knepley } 667ca3d3a14SMatthew G. Knepley 668ca3d3a14SMatthew G. Knepley /*@ 669ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 670ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 671ca3d3a14SMatthew G. Knepley 672ca3d3a14SMatthew G. Knepley Input Parameters: 673ca3d3a14SMatthew G. Knepley + dm - The DM 674ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 675ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 676f0fc11ceSJed Brown - gamma - The third Euler angle 677ca3d3a14SMatthew G. Knepley 678ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 679ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 680ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 681ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 682ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 683ca3d3a14SMatthew G. Knepley 684ca3d3a14SMatthew G. Knepley Level: developer 685ca3d3a14SMatthew G. Knepley 686db781477SPatrick Sanan .seealso: `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()` 687ca3d3a14SMatthew G. Knepley @*/ 688ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 689ca3d3a14SMatthew G. Knepley { 690ca3d3a14SMatthew G. Knepley RotCtx *rc; 691ca3d3a14SMatthew G. Knepley PetscInt cdim; 692ca3d3a14SMatthew G. Knepley 693362febeeSStefano Zampini PetscFunctionBegin; 6949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 6959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &rc)); 696ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 697ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 698ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 699ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 700ca3d3a14SMatthew G. Knepley rc->dim = cdim; 701ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 702ca3d3a14SMatthew G. Knepley rc->beta = beta; 703ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 7049566063dSJacob Faibussowitsch PetscCall((*dm->transformSetUp)(dm, dm->transformCtx)); 7059566063dSJacob Faibussowitsch PetscCall(DMConstructBasisTransform_Internal(dm)); 706ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 707ca3d3a14SMatthew G. Knepley } 708ca3d3a14SMatthew G. Knepley 709b278463cSMatthew G. Knepley /*@C 710ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates 711b278463cSMatthew G. Knepley 712b278463cSMatthew G. Knepley Input Parameters: 713b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 714b278463cSMatthew G. Knepley . time - The time 715b278463cSMatthew G. Knepley . field - The field to constrain 7161c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7171c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 718b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 719b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 720b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 721b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 722b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 723b278463cSMatthew G. Knepley 724b278463cSMatthew G. Knepley Output Parameter: 725b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 726b278463cSMatthew G. Knepley 727b278463cSMatthew G. Knepley Level: developer 728b278463cSMatthew G. Knepley 729db781477SPatrick Sanan .seealso: `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 730b278463cSMatthew G. Knepley @*/ 7311c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 73255f2e967SMatthew G. Knepley { 7330163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 73455f2e967SMatthew G. Knepley void **ctxs; 735d7ddef95SMatthew G. Knepley PetscInt numFields; 736d7ddef95SMatthew G. Knepley 737d7ddef95SMatthew G. Knepley PetscFunctionBegin; 7389566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 7399566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields,&funcs,numFields,&ctxs)); 740d7ddef95SMatthew G. Knepley funcs[field] = func; 741d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 7429566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX)); 7439566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs,ctxs)); 744d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 745d7ddef95SMatthew G. Knepley } 746d7ddef95SMatthew G. Knepley 747b278463cSMatthew G. Knepley /*@C 748ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data 749b278463cSMatthew G. Knepley 750b278463cSMatthew G. Knepley Input Parameters: 751b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 752b278463cSMatthew G. Knepley . time - The time 753b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 754b278463cSMatthew G. Knepley . field - The field to constrain 7551c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7561c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 757b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 758b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 759b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 760b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 761b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 762b278463cSMatthew G. Knepley 763b278463cSMatthew G. Knepley Output Parameter: 764b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 765b278463cSMatthew G. Knepley 766b278463cSMatthew G. Knepley Level: developer 767b278463cSMatthew G. Knepley 768db781477SPatrick Sanan .seealso: `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 769b278463cSMatthew G. Knepley @*/ 7701c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], 771c60e475cSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 772c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 773c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 77497b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], 775b278463cSMatthew G. Knepley PetscScalar[]), 776b278463cSMatthew G. Knepley void *ctx, Vec locX) 777c60e475cSMatthew G. Knepley { 778c60e475cSMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 779c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 780c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 78197b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 782c60e475cSMatthew G. Knepley void **ctxs; 783c60e475cSMatthew G. Knepley PetscInt numFields; 784c60e475cSMatthew G. Knepley 785c60e475cSMatthew G. Knepley PetscFunctionBegin; 7869566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 7879566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields,&funcs,numFields,&ctxs)); 788c60e475cSMatthew G. Knepley funcs[field] = func; 789c60e475cSMatthew G. Knepley ctxs[field] = ctx; 7909566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 7919566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs,ctxs)); 792c60e475cSMatthew G. Knepley PetscFunctionReturn(0); 793c60e475cSMatthew G. Knepley } 794c60e475cSMatthew G. Knepley 795b278463cSMatthew G. Knepley /*@C 796ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coodinates and boundary field data 797ece3a9fcSMatthew G. Knepley 798ece3a9fcSMatthew G. Knepley Collective on dm 799ece3a9fcSMatthew G. Knepley 800ece3a9fcSMatthew G. Knepley Input Parameters: 801ece3a9fcSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 802ece3a9fcSMatthew G. Knepley . time - The time 803ece3a9fcSMatthew G. Knepley . locU - A local vector with the input solution values 804ece3a9fcSMatthew G. Knepley . field - The field to constrain 805ece3a9fcSMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 806ece3a9fcSMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 807ece3a9fcSMatthew G. Knepley . label - The DMLabel defining constrained points 808ece3a9fcSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 809ece3a9fcSMatthew G. Knepley . ids - An array of ids for constrained points 810ece3a9fcSMatthew G. Knepley . func - A pointwise function giving boundary values, the calling sequence is given in DMProjectBdFieldLabelLocal() 811ece3a9fcSMatthew G. Knepley - ctx - An optional user context for bcFunc 812ece3a9fcSMatthew G. Knepley 813ece3a9fcSMatthew G. Knepley Output Parameter: 814ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values 815ece3a9fcSMatthew G. Knepley 816ece3a9fcSMatthew G. Knepley Level: developer 817ece3a9fcSMatthew G. Knepley 818db781477SPatrick Sanan .seealso: `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 819ece3a9fcSMatthew G. Knepley @*/ 820ece3a9fcSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], 821ece3a9fcSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 822ece3a9fcSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 823ece3a9fcSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 824ece3a9fcSMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], 825ece3a9fcSMatthew G. Knepley PetscScalar[]), 826ece3a9fcSMatthew G. Knepley void *ctx, Vec locX) 827ece3a9fcSMatthew G. Knepley { 828ece3a9fcSMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 829ece3a9fcSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 830ece3a9fcSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 831ece3a9fcSMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 832ece3a9fcSMatthew G. Knepley void **ctxs; 833ece3a9fcSMatthew G. Knepley PetscInt numFields; 834ece3a9fcSMatthew G. Knepley 835ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8369566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 8379566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields,&funcs,numFields,&ctxs)); 838ece3a9fcSMatthew G. Knepley funcs[field] = func; 839ece3a9fcSMatthew G. Knepley ctxs[field] = ctx; 8409566063dSJacob Faibussowitsch PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 8419566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs,ctxs)); 842ece3a9fcSMatthew G. Knepley PetscFunctionReturn(0); 843ece3a9fcSMatthew G. Knepley } 844ece3a9fcSMatthew G. Knepley 845ece3a9fcSMatthew G. Knepley /*@C 846b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 847b278463cSMatthew G. Knepley 848b278463cSMatthew G. Knepley Input Parameters: 849b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 850b278463cSMatthew G. Knepley . time - The time 851b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 852b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 853b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 854b278463cSMatthew G. Knepley . field - The field to constrain 8551c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 8561c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 857b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 858b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 859b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 860b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 861b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 862b278463cSMatthew G. Knepley 863b278463cSMatthew G. Knepley Output Parameter: 864b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 865b278463cSMatthew G. Knepley 866b278463cSMatthew G. Knepley Note: This implementation currently ignores the numcomps/comps argument from DMAddBoundary() 867b278463cSMatthew G. Knepley 868b278463cSMatthew G. Knepley Level: developer 869b278463cSMatthew G. Knepley 870db781477SPatrick Sanan .seealso: `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 871b278463cSMatthew G. Knepley @*/ 8721c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], 873b278463cSMatthew G. Knepley PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 874d7ddef95SMatthew G. Knepley { 87561f58d28SMatthew G. Knepley PetscDS prob; 876da97024aSMatthew G. Knepley PetscSF sf; 877d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 87820369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 879da97024aSMatthew G. Knepley const PetscInt *leaves; 880d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 881520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 8825f80ce2aSJacob Faibussowitsch PetscErrorCode ierru = 0; 883d7ddef95SMatthew G. Knepley 884d7ddef95SMatthew G. Knepley PetscFunctionBegin; 8859566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 8869566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 887da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 8889566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8899566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 8909566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 8919566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 8929566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 89320369375SToby Isaac if (cellGeometry) { 8949566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 8959566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 89620369375SToby Isaac } 897d7ddef95SMatthew G. Knepley if (Grad) { 898c0a6632aSMatthew G. Knepley PetscFV fv; 899c0a6632aSMatthew G. Knepley 9009566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *) &fv)); 9019566063dSJacob Faibussowitsch PetscCall(VecGetDM(Grad, &dmGrad)); 9029566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Grad, &grad)); 9039566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 9049566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 905d7ddef95SMatthew G. Knepley } 9069566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX, &x)); 907d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 908d7ddef95SMatthew G. Knepley IS faceIS; 909d7ddef95SMatthew G. Knepley const PetscInt *faces; 910d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 911d7ddef95SMatthew G. Knepley 9129566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS)); 913d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 9149566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 916d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 917d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 918640bce14SSatish Balay PetscFVFaceGeom *fg; 919d7ddef95SMatthew G. Knepley 920d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 9219566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc)); 922da97024aSMatthew G. Knepley if (loc >= 0) continue; 9239566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 9249566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 925d7ddef95SMatthew G. Knepley if (Grad) { 926640bce14SSatish Balay PetscFVCellGeom *cg; 927640bce14SSatish Balay PetscScalar *cx, *cgrad; 928d7ddef95SMatthew G. Knepley PetscScalar *xG; 929d7ddef95SMatthew G. Knepley PetscReal dx[3]; 930d7ddef95SMatthew G. Knepley PetscInt d; 931d7ddef95SMatthew G. Knepley 9329566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg)); 9339566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx)); 9349566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad)); 9359566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 936d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 937d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 9389566063dSJacob Faibussowitsch PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx)); 939d7ddef95SMatthew G. Knepley } else { 940640bce14SSatish Balay PetscScalar *xI; 941d7ddef95SMatthew G. Knepley PetscScalar *xG; 942d7ddef95SMatthew G. Knepley 9439566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI)); 9449566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 945e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 946e735a8a9SMatthew G. Knepley if (ierru) { 9479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 949e735a8a9SMatthew G. Knepley goto cleanup; 950e735a8a9SMatthew G. Knepley } 951d7ddef95SMatthew G. Knepley } 952d7ddef95SMatthew G. Knepley } 9539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 955d7ddef95SMatthew G. Knepley } 956e735a8a9SMatthew G. Knepley cleanup: 9579566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX, &x)); 958d7ddef95SMatthew G. Knepley if (Grad) { 9599566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 9609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Grad, &grad)); 961d7ddef95SMatthew G. Knepley } 9629566063dSJacob Faibussowitsch if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 9639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 9649566063dSJacob Faibussowitsch PetscCall(ierru); 965d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 966d7ddef95SMatthew G. Knepley } 967d7ddef95SMatthew G. Knepley 9680c364540SMatthew G. Knepley static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 9690c364540SMatthew G. Knepley { 9700c364540SMatthew G. Knepley PetscInt c; 9710c364540SMatthew G. Knepley for (c = 0; c < Nc; ++c) u[c] = 0.0; 9720c364540SMatthew G. Knepley return 0; 9730c364540SMatthew G. Knepley } 9740c364540SMatthew G. Knepley 975f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 976d7ddef95SMatthew G. Knepley { 9770c364540SMatthew G. Knepley PetscObject isZero; 978e5e52638SMatthew G. Knepley PetscDS prob; 979d7ddef95SMatthew G. Knepley PetscInt numBd, b; 98055f2e967SMatthew G. Knepley 98155f2e967SMatthew G. Knepley PetscFunctionBegin; 9829566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 9839566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 9849566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) locX, "__Vec_bc_zero__", &isZero)); 98555f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 98645480ffeSMatthew G. Knepley PetscWeakForm wf; 987f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 98845480ffeSMatthew G. Knepley const char *name; 989d7ddef95SMatthew G. Knepley DMLabel label; 9901c531cf8SMatthew G. Knepley PetscInt field, Nc; 9911c531cf8SMatthew G. Knepley const PetscInt *comps; 992d7ddef95SMatthew G. Knepley PetscObject obj; 993d7ddef95SMatthew G. Knepley PetscClassId id; 99445480ffeSMatthew G. Knepley void (*bvfunc)(void); 995d7ddef95SMatthew G. Knepley PetscInt numids; 996d7ddef95SMatthew G. Knepley const PetscInt *ids; 99755f2e967SMatthew G. Knepley void *ctx; 99855f2e967SMatthew G. Knepley 9999566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 1000f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 10019566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 10029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1003d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1004c60e475cSMatthew G. Knepley switch (type) { 1005c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 1006c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL: 100745480ffeSMatthew G. Knepley { 100845480ffeSMatthew G. Knepley PetscSimplePointFunc func = (PetscSimplePointFunc) bvfunc; 100945480ffeSMatthew G. Knepley 101045480ffeSMatthew G. Knepley if (isZero) func = zero; 10119566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm,label)); 10129566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX)); 10139566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm,label)); 101445480ffeSMatthew G. Knepley } 1015c60e475cSMatthew G. Knepley break; 1016c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL_FIELD: 101745480ffeSMatthew G. Knepley { 101845480ffeSMatthew G. Knepley PetscPointFunc func = (PetscPointFunc) bvfunc; 101945480ffeSMatthew G. Knepley 10209566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm,label)); 10219566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX)); 10229566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm,label)); 102345480ffeSMatthew G. Knepley } 1024c60e475cSMatthew G. Knepley break; 1025c60e475cSMatthew G. Knepley default: break; 1026c60e475cSMatthew G. Knepley } 1027d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 102845480ffeSMatthew G. Knepley { 102945480ffeSMatthew G. Knepley PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*) = (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) bvfunc; 103045480ffeSMatthew G. Knepley 103143ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 10329566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX)); 103345480ffeSMatthew G. Knepley } 103463a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 103555f2e967SMatthew G. Knepley } 103655f2e967SMatthew G. Knepley PetscFunctionReturn(0); 103755f2e967SMatthew G. Knepley } 103855f2e967SMatthew G. Knepley 103956cf3b9cSMatthew G. Knepley PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 104056cf3b9cSMatthew G. Knepley { 104156cf3b9cSMatthew G. Knepley PetscObject isZero; 104256cf3b9cSMatthew G. Knepley PetscDS prob; 104356cf3b9cSMatthew G. Knepley PetscInt numBd, b; 104456cf3b9cSMatthew G. Knepley 104556cf3b9cSMatthew G. Knepley PetscFunctionBegin; 104656cf3b9cSMatthew G. Knepley if (!locX) PetscFunctionReturn(0); 10479566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10489566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 10499566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) locX, "__Vec_bc_zero__", &isZero)); 105056cf3b9cSMatthew G. Knepley for (b = 0; b < numBd; ++b) { 105145480ffeSMatthew G. Knepley PetscWeakForm wf; 105256cf3b9cSMatthew G. Knepley DMBoundaryConditionType type; 105345480ffeSMatthew G. Knepley const char *name; 105456cf3b9cSMatthew G. Knepley DMLabel label; 105556cf3b9cSMatthew G. Knepley PetscInt field, Nc; 105656cf3b9cSMatthew G. Knepley const PetscInt *comps; 105756cf3b9cSMatthew G. Knepley PetscObject obj; 105856cf3b9cSMatthew G. Knepley PetscClassId id; 105956cf3b9cSMatthew G. Knepley PetscInt numids; 106056cf3b9cSMatthew G. Knepley const PetscInt *ids; 106145480ffeSMatthew G. Knepley void (*bvfunc)(void); 106256cf3b9cSMatthew G. Knepley void *ctx; 106356cf3b9cSMatthew G. Knepley 10649566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx)); 106556cf3b9cSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 10669566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 10679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 106856cf3b9cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 106956cf3b9cSMatthew G. Knepley switch (type) { 107056cf3b9cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 107156cf3b9cSMatthew G. Knepley case DM_BC_ESSENTIAL: 107245480ffeSMatthew G. Knepley { 107345480ffeSMatthew G. Knepley PetscSimplePointFunc func_t = (PetscSimplePointFunc) bvfunc; 107445480ffeSMatthew G. Knepley 107545480ffeSMatthew G. Knepley if (isZero) func_t = zero; 10769566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm,label)); 10779566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 10789566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm,label)); 107945480ffeSMatthew G. Knepley } 108056cf3b9cSMatthew G. Knepley break; 108156cf3b9cSMatthew G. Knepley case DM_BC_ESSENTIAL_FIELD: 108245480ffeSMatthew G. Knepley { 108345480ffeSMatthew G. Knepley PetscPointFunc func_t = (PetscPointFunc) bvfunc; 108445480ffeSMatthew G. Knepley 10859566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm,label)); 10869566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 10879566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm,label)); 108845480ffeSMatthew G. Knepley } 108956cf3b9cSMatthew G. Knepley break; 109056cf3b9cSMatthew G. Knepley default: break; 109156cf3b9cSMatthew G. Knepley } 109263a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 109356cf3b9cSMatthew G. Knepley } 109456cf3b9cSMatthew G. Knepley PetscFunctionReturn(0); 109556cf3b9cSMatthew G. Knepley } 109656cf3b9cSMatthew G. Knepley 1097f1d73a7aSMatthew G. Knepley /*@ 1098f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 1099f1d73a7aSMatthew G. Knepley 1100ed808b8fSJed Brown Not Collective 1101ed808b8fSJed Brown 1102f1d73a7aSMatthew G. Knepley Input Parameters: 1103f1d73a7aSMatthew G. Knepley + dm - The DM 1104f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 1105f1d73a7aSMatthew G. Knepley . time - The time 1106f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 1107f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 1108f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 1109f1d73a7aSMatthew G. Knepley 1110f1d73a7aSMatthew G. Knepley Output Parameters: 1111f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 1112f1d73a7aSMatthew G. Knepley 1113ed808b8fSJed Brown Level: intermediate 1114f1d73a7aSMatthew G. Knepley 1115db781477SPatrick Sanan .seealso: `DMProjectFunctionLabelLocal()`, `DMAddBoundary()` 1116f1d73a7aSMatthew G. Knepley @*/ 1117f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1118f1d73a7aSMatthew G. Knepley { 1119f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1120f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1121064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 1122064a246eSJacob Faibussowitsch if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);} 1123064a246eSJacob Faibussowitsch if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);} 1124064a246eSJacob Faibussowitsch if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);} 1125cac4c232SBarry Smith PetscTryMethod(dm,"DMPlexInsertBoundaryValues_C",(DM,PetscBool,Vec,PetscReal,Vec,Vec,Vec),(dm,insertEssential,locX,time,faceGeomFVM,cellGeomFVM,gradFVM)); 1126f1d73a7aSMatthew G. Knepley PetscFunctionReturn(0); 1127f1d73a7aSMatthew G. Knepley } 1128f1d73a7aSMatthew G. Knepley 112956cf3b9cSMatthew G. Knepley /*@ 1130a5b23f4aSJose E. Roman DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector 113156cf3b9cSMatthew G. Knepley 113256cf3b9cSMatthew G. Knepley Input Parameters: 113356cf3b9cSMatthew G. Knepley + dm - The DM 113456cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 113556cf3b9cSMatthew G. Knepley . time - The time 113656cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 113756cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 113856cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 113956cf3b9cSMatthew G. Knepley 114056cf3b9cSMatthew G. Knepley Output Parameters: 114156cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values 114256cf3b9cSMatthew G. Knepley 114356cf3b9cSMatthew G. Knepley Level: developer 114456cf3b9cSMatthew G. Knepley 1145db781477SPatrick Sanan .seealso: `DMProjectFunctionLabelLocal()` 114656cf3b9cSMatthew G. Knepley @*/ 114756cf3b9cSMatthew G. Knepley PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 114856cf3b9cSMatthew G. Knepley { 114956cf3b9cSMatthew G. Knepley PetscFunctionBegin; 115056cf3b9cSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1151064a246eSJacob Faibussowitsch if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3);} 1152064a246eSJacob Faibussowitsch if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);} 1153064a246eSJacob Faibussowitsch if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);} 1154064a246eSJacob Faibussowitsch if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);} 1155cac4c232SBarry Smith PetscTryMethod(dm,"DMPlexInsertTimeDerviativeBoundaryValues_C",(DM,PetscBool,Vec,PetscReal,Vec,Vec,Vec),(dm,insertEssential,locX_t,time,faceGeomFVM,cellGeomFVM,gradFVM)); 115656cf3b9cSMatthew G. Knepley PetscFunctionReturn(0); 115756cf3b9cSMatthew G. Knepley } 115856cf3b9cSMatthew G. Knepley 11590709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1160cb1e1211SMatthew G Knepley { 1161574a98acSMatthew G. Knepley Vec localX; 1162574a98acSMatthew G. Knepley 1163574a98acSMatthew G. Knepley PetscFunctionBegin; 11649566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 11659566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL)); 11669566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 11679566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 11689566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff)); 11699566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1170574a98acSMatthew G. Knepley PetscFunctionReturn(0); 1171574a98acSMatthew G. Knepley } 1172574a98acSMatthew G. Knepley 1173574a98acSMatthew G. Knepley /*@C 1174ca3d3a14SMatthew G. Knepley DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1175574a98acSMatthew G. Knepley 1176d083f849SBarry Smith Collective on dm 1177c0f8e1fdSMatthew G. Knepley 1178574a98acSMatthew G. Knepley Input Parameters: 1179574a98acSMatthew G. Knepley + dm - The DM 1180574a98acSMatthew G. Knepley . time - The time 1181574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 1182574a98acSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1183574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1184574a98acSMatthew G. Knepley 1185574a98acSMatthew G. Knepley Output Parameter: 1186574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1187574a98acSMatthew G. Knepley 1188574a98acSMatthew G. Knepley Level: developer 1189574a98acSMatthew G. Knepley 1190db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1191574a98acSMatthew G. Knepley @*/ 1192574a98acSMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1193574a98acSMatthew G. Knepley { 11940f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1195ca3d3a14SMatthew G. Knepley DM tdm; 1196ca3d3a14SMatthew G. Knepley Vec tv; 1197cb1e1211SMatthew G Knepley PetscSection section; 1198c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 11994bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 120015496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 12014bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 1202cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 12037318780aSToby Isaac const PetscReal *quadWeights; 1204412e9a14SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset; 1205ca3d3a14SMatthew G. Knepley PetscBool transform; 1206cb1e1211SMatthew G Knepley 1207cb1e1211SMatthew G Knepley PetscFunctionBegin; 12089566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 12099566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 12102a4e142eSMatthew G. Knepley fegeom.dimEmbed = coordDim; 12119566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 12129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 12139566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 12149566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 12159566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1216cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 121715496722SMatthew G. Knepley PetscObject obj; 121815496722SMatthew G. Knepley PetscClassId id; 1219c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1220c5bbbd5bSMatthew G. Knepley 12219566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 122315496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 122415496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 122515496722SMatthew G. Knepley 12269566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 12279566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 122815496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 122915496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 123015496722SMatthew G. Knepley 12319566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 12329566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 123363a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1234c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1235cb1e1211SMatthew G Knepley } 12369566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 123763a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents),PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 12389566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ)); 12399566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 12409566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 1241cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1242a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1243cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 12449c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1245cb1e1211SMatthew G Knepley 12469566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 12479566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 1248cb1e1211SMatthew G Knepley 124915496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 125015496722SMatthew G. Knepley PetscObject obj; 125115496722SMatthew G. Knepley PetscClassId id; 1252c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 125315496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1254cb1e1211SMatthew G Knepley 12559566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 12579566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) {PetscCall(PetscFEGetNumComponents((PetscFE) obj, &Nc));PetscCall(PetscFEGetDimension((PetscFE) obj, &Nb));} 12589566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) {PetscCall(PetscFVGetNumComponents((PetscFV) obj, &Nc));Nb = 1;} 125963a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1260cb1e1211SMatthew G Knepley if (debug) { 1261cb1e1211SMatthew G Knepley char title[1024]; 126263a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 12639566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1264cb1e1211SMatthew G Knepley } 12657318780aSToby Isaac for (q = 0; q < Nq; ++q) { 12662a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1267d0609cedSBarry Smith PetscErrorCode ierr; 12682a4e142eSMatthew G. Knepley 12692a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 12702a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 12712a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 12722a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 127363a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1274d3a7d86cSMatthew G. Knepley if (transform) { 1275d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*Nq]; 12769566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx)); 1277d3a7d86cSMatthew G. Knepley } else { 1278d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*q]; 1279d3a7d86cSMatthew G. Knepley } 12809566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal,Nc)); 1281ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1282e735a8a9SMatthew G. Knepley if (ierr) { 12839566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 12849566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 12859566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ)); 1286e735a8a9SMatthew G. Knepley } 12879566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 12889566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant)); 12899566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant)); 12902df84da0SMatthew G. Knepley else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 129115496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1292beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 129363a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim*q] : 0.), (double)(coordDim > 1 ? coords[coordDim*q+1] : 0.),(double)(coordDim > 2 ? coords[coordDim*q+2] : 0.), (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc]))); 12944bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 1295cb1e1211SMatthew G Knepley } 1296cb1e1211SMatthew G Knepley } 12979c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1298beaa55a6SMatthew G. Knepley qc += Nc; 1299cb1e1211SMatthew G Knepley } 13009566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 13019566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 1302cb1e1211SMatthew G Knepley localDiff += elemDiff; 1303cb1e1211SMatthew G Knepley } 13049566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ)); 13051c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 1306cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 1307cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1308cb1e1211SMatthew G Knepley } 1309cb1e1211SMatthew G Knepley 1310b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1311cb1e1211SMatthew G Knepley { 13120f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1313ca3d3a14SMatthew G. Knepley DM tdm; 1314cb1e1211SMatthew G Knepley PetscSection section; 131540e14135SMatthew G. Knepley PetscQuadrature quad; 1316ca3d3a14SMatthew G. Knepley Vec localX, tv; 13179c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 13182a4e142eSMatthew G. Knepley const PetscReal *quadWeights; 13194bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 13204bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 132140e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 1322485ad865SMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset; 1323ca3d3a14SMatthew G. Knepley PetscBool transform; 1324cb1e1211SMatthew G Knepley 1325cb1e1211SMatthew G Knepley PetscFunctionBegin; 13269566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 13279566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 13284bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 13299566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 13309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 13319566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 13329566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 13339566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 13349566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 13359566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 13369566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1337652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 13380f2d7e86SMatthew G. Knepley PetscFE fe; 133940e14135SMatthew G. Knepley PetscInt Nc; 1340652b88e8SMatthew G. Knepley 13419566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *) &fe)); 13429566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 13439566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 134440e14135SMatthew G. Knepley numComponents += Nc; 1345652b88e8SMatthew G. Knepley } 13469566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 134763a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents),PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 13489566063dSJacob Faibussowitsch /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */ 13499566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents,&funcVal,coordDim*Nq,&coords,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ,numComponents*coordDim,&interpolant,Nq,&fegeom.detJ)); 13509566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 135140e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 135240e14135SMatthew G. Knepley PetscScalar *x = NULL; 135340e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 13549c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1355652b88e8SMatthew G. Knepley 13569566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 13579566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 135840e14135SMatthew G. Knepley 13599c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 13600f2d7e86SMatthew G. Knepley PetscFE fe; 136151259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 13629c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 136340e14135SMatthew G. Knepley 13649566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *) &fe)); 13659566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 13669566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 136740e14135SMatthew G. Knepley if (debug) { 136840e14135SMatthew G. Knepley char title[1024]; 13699566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 13709566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1371652b88e8SMatthew G. Knepley } 13729c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 13732a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1374d0609cedSBarry Smith PetscErrorCode ierr; 13752a4e142eSMatthew G. Knepley 13762a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 13772a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 13782a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 13792a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 13802df84da0SMatthew G. Knepley PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1381d3a7d86cSMatthew G. Knepley if (transform) { 1382d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*Nq]; 13839566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx)); 1384d3a7d86cSMatthew G. Knepley } else { 1385d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*q]; 1386d3a7d86cSMatthew G. Knepley } 13879566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal,Nc)); 13884bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx); 1389e735a8a9SMatthew G. Knepley if (ierr) { 13909566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 13919566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 13929566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal,coords,fegeom.J,fegeom.invJ,interpolant,fegeom.detJ)); 1393e735a8a9SMatthew G. Knepley } 13949566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 13959566063dSJacob Faibussowitsch PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant)); 13964bee2e38SMatthew G. Knepley /* Overwrite with the dot product if the normal is given */ 13974bee2e38SMatthew G. Knepley if (n) { 13984bee2e38SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 13994bee2e38SMatthew G. Knepley PetscScalar sum = 0.0; 14004bee2e38SMatthew G. Knepley PetscInt d; 14014bee2e38SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += interpolant[fc*dim+d]*n[d]; 14024bee2e38SMatthew G. Knepley interpolant[fc] = sum; 14034bee2e38SMatthew G. Knepley } 14044bee2e38SMatthew G. Knepley } 14059c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1406beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 140763a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]))); 14084bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 140940e14135SMatthew G. Knepley } 141040e14135SMatthew G. Knepley } 14119c3cf19fSMatthew G. Knepley fieldOffset += Nb; 14129c3cf19fSMatthew G. Knepley qc += Nc; 141340e14135SMatthew G. Knepley } 14149566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 141563a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 141640e14135SMatthew G. Knepley localDiff += elemDiff; 141740e14135SMatthew G. Knepley } 14189566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal,coords,fegeom.J,fegeom.invJ,interpolant,fegeom.detJ)); 14199566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14201c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 142140e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 1422cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1423cb1e1211SMatthew G Knepley } 1424cb1e1211SMatthew G Knepley 1425c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 142673d901b8SMatthew G. Knepley { 14270f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1428ca3d3a14SMatthew G. Knepley DM tdm; 1429083401c6SMatthew G. Knepley DMLabel depthLabel; 143073d901b8SMatthew G. Knepley PetscSection section; 1431ca3d3a14SMatthew G. Knepley Vec localX, tv; 143273d901b8SMatthew G. Knepley PetscReal *localDiff; 1433083401c6SMatthew G. Knepley PetscInt dim, depth, dE, Nf, f, Nds, s; 1434ca3d3a14SMatthew G. Knepley PetscBool transform; 143573d901b8SMatthew G. Knepley 143673d901b8SMatthew G. Knepley PetscFunctionBegin; 14379566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 14389566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 14399566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 14409566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 14419566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 14429566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 14439566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 14449566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 14459566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 14469566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(depthLabel, &depth)); 1447083401c6SMatthew G. Knepley 14489566063dSJacob Faibussowitsch PetscCall(VecSet(localX, 0.0)); 14499566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 14509566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 14519566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 14529566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 14539566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nf, &localDiff)); 1454083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1455083401c6SMatthew G. Knepley PetscDS ds; 1456083401c6SMatthew G. Knepley DMLabel label; 1457083401c6SMatthew G. Knepley IS fieldIS, pointIS; 1458083401c6SMatthew G. Knepley const PetscInt *fields, *points = NULL; 1459083401c6SMatthew G. Knepley PetscQuadrature quad; 1460083401c6SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1461083401c6SMatthew G. Knepley PetscFEGeom fegeom; 1462083401c6SMatthew G. Knepley PetscReal *coords, *gcoords; 1463083401c6SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 14645fedec97SMatthew G. Knepley PetscBool isCohesive; 1465083401c6SMatthew G. Knepley PetscInt qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf; 146673d901b8SMatthew G. Knepley 14679566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds)); 14689566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 14699566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 14709566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 14719566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(ds, &totNc)); 14729566063dSJacob Faibussowitsch PetscCall(PetscDSGetQuadrature(ds, &quad)); 14739566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 147463a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != totNc),PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc); 14759566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE*(Nq+1), &coords,Nq, &fegeom.detJ, dE*dE*Nq, &fegeom.J, dE*dE*Nq, &fegeom.invJ)); 1476083401c6SMatthew G. Knepley if (!label) { 14779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1478083401c6SMatthew G. Knepley } else { 14799566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 14809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &cEnd)); 14819566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 1482083401c6SMatthew G. Knepley } 148373d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1484083401c6SMatthew G. Knepley const PetscInt cell = points ? points[c] : c; 148573d901b8SMatthew G. Knepley PetscScalar *x = NULL; 14865fedec97SMatthew G. Knepley const PetscInt *cone; 14875fedec97SMatthew G. Knepley PetscInt qc = 0, fOff = 0, dep; 148873d901b8SMatthew G. Knepley 14899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, cell, &dep)); 1490083401c6SMatthew G. Knepley if (dep != depth-1) continue; 14915fedec97SMatthew G. Knepley if (isCohesive) { 14929566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 14939566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 149496959cd1SMatthew G. Knepley } else { 14959566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 149696959cd1SMatthew G. Knepley } 14979566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, cell, NULL, &x)); 14985fedec97SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 149915496722SMatthew G. Knepley PetscObject obj; 150015496722SMatthew G. Knepley PetscClassId id; 1501083401c6SMatthew G. Knepley void * const ctx = ctxs ? ctxs[fields[f]] : NULL; 150215496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 150315496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 15045fedec97SMatthew G. Knepley PetscBool cohesive; 150515496722SMatthew G. Knepley 15069566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 15075fedec97SMatthew G. Knepley if (isCohesive && !cohesive) continue; 15089566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 15099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 15109566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) {PetscCall(PetscFEGetNumComponents((PetscFE) obj, &Nc));PetscCall(PetscFEGetDimension((PetscFE) obj, &Nb));} 15119566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) {PetscCall(PetscFVGetNumComponents((PetscFV) obj, &Nc));Nb = 1;} 151263a3b9bcSJacob Faibussowitsch else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 151373d901b8SMatthew G. Knepley if (debug) { 151473d901b8SMatthew G. Knepley char title[1024]; 151563a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f])); 15169566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff])); 151773d901b8SMatthew G. Knepley } 15187318780aSToby Isaac for (q = 0; q < Nq; ++q) { 15192a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1520d0609cedSBarry Smith PetscErrorCode ierr; 15212a4e142eSMatthew G. Knepley 15222a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 1523083401c6SMatthew G. Knepley qgeom.J = &fegeom.J[q*dE*dE]; 1524083401c6SMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*dE*dE]; 15252a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 152663a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 1527d3a7d86cSMatthew G. Knepley if (transform) { 1528083401c6SMatthew G. Knepley gcoords = &coords[dE*Nq]; 15299566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE*q], PETSC_TRUE, dE, &coords[dE*q], gcoords, dm->transformCtx)); 1530d3a7d86cSMatthew G. Knepley } else { 1531083401c6SMatthew G. Knepley gcoords = &coords[dE*q]; 1532d3a7d86cSMatthew G. Knepley } 15332df84da0SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.; 1534083401c6SMatthew G. Knepley ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx); 1535e735a8a9SMatthew G. Knepley if (ierr) { 15369566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 15379566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 15389566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ)); 1539e735a8a9SMatthew G. Knepley } 15409566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 154196959cd1SMatthew G. Knepley /* Call once for each face, except for lagrange field */ 15429566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE) obj, &x[fOff], &qgeom, q, interpolant)); 15439566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV) obj, &x[fOff], q, interpolant)); 154463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 154515496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1546beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 154763a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE*q] : 0.), (double)(dE > 1 ? coords[dE*q+1] : 0.),(double)(dE > 2 ? coords[dE*q+2] : 0.), (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]))); 15484bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 154973d901b8SMatthew G. Knepley } 155073d901b8SMatthew G. Knepley } 1551083401c6SMatthew G. Knepley fOff += Nb; 15529c3cf19fSMatthew G. Knepley qc += Nc; 1553083401c6SMatthew G. Knepley localDiff[fields[f]] += elemDiff; 155463a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]])); 155573d901b8SMatthew G. Knepley } 15569566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 1557083401c6SMatthew G. Knepley } 1558083401c6SMatthew G. Knepley if (label) { 15599566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 15609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1561083401c6SMatthew G. Knepley } 15629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 15639566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 156473d901b8SMatthew G. Knepley } 15659566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 15661c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 15679566063dSJacob Faibussowitsch PetscCall(PetscFree(localDiff)); 1568083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]); 156973d901b8SMatthew G. Knepley PetscFunctionReturn(0); 157073d901b8SMatthew G. Knepley } 157173d901b8SMatthew G. Knepley 1572e729f68cSMatthew G. Knepley /*@C 1573e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1574e729f68cSMatthew G. Knepley 1575d083f849SBarry Smith Collective on dm 1576c0f8e1fdSMatthew G. Knepley 1577e729f68cSMatthew G. Knepley Input Parameters: 1578e729f68cSMatthew G. Knepley + dm - The DM 15790163fd50SMatthew G. Knepley . time - The time 1580ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 1581e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1582e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1583e729f68cSMatthew G. Knepley 1584e729f68cSMatthew G. Knepley Output Parameter: 1585e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 1586e729f68cSMatthew G. Knepley 1587e729f68cSMatthew G. Knepley Level: developer 1588e729f68cSMatthew G. Knepley 1589db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1590e729f68cSMatthew G. Knepley @*/ 15910163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1592e729f68cSMatthew G. Knepley { 1593e729f68cSMatthew G. Knepley PetscSection section; 1594e729f68cSMatthew G. Knepley PetscQuadrature quad; 1595e729f68cSMatthew G. Knepley Vec localX; 15964bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 1597e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 15984bee2e38SMatthew G. Knepley PetscReal *coords; 1599e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1600485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset; 1601e729f68cSMatthew G. Knepley 1602e729f68cSMatthew G. Knepley PetscFunctionBegin; 16039566063dSJacob Faibussowitsch PetscCall(VecSet(D, 0.0)); 16049566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 16069566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 16079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 16089566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 16099566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 16109566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 16119566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 1612e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1613e729f68cSMatthew G. Knepley PetscObject obj; 1614e729f68cSMatthew G. Knepley PetscClassId id; 1615e729f68cSMatthew G. Knepley PetscInt Nc; 1616e729f68cSMatthew G. Knepley 16179566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 16189566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1619e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1620e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1621e729f68cSMatthew G. Knepley 16229566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 16239566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 1624e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1625e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 1626e729f68cSMatthew G. Knepley 16279566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 16289566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 162963a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1630e729f68cSMatthew G. Knepley numComponents += Nc; 1631e729f68cSMatthew G. Knepley } 16329566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 163363a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents),PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 16349566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ)); 16359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1636e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1637e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 16386f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 16399c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1640e729f68cSMatthew G. Knepley 16419566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 16429566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 1643e729f68cSMatthew G. Knepley 1644e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1645e729f68cSMatthew G. Knepley PetscObject obj; 1646e729f68cSMatthew G. Knepley PetscClassId id; 1647e729f68cSMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 1648e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1649e729f68cSMatthew G. Knepley 16509566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 16519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 16529566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) {PetscCall(PetscFEGetNumComponents((PetscFE) obj, &Nc));PetscCall(PetscFEGetDimension((PetscFE) obj, &Nb));} 16539566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) {PetscCall(PetscFVGetNumComponents((PetscFV) obj, &Nc));Nb = 1;} 165463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 165523f34ed2SToby Isaac if (funcs[field]) { 16567318780aSToby Isaac for (q = 0; q < Nq; ++q) { 16572a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 16582a4e142eSMatthew G. Knepley 16592a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 16602a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 16612a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 16622a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 166363a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 16649566063dSJacob Faibussowitsch PetscCall((*funcs[field])(coordDim, time, &coords[q*coordDim], Nc, funcVal, ctx)); 1665c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument) 1666e735a8a9SMatthew G. Knepley if (ierr) { 16679566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 16689566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ)); 16699566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1670e735a8a9SMatthew G. Knepley } 1671c3e24edfSBarry Smith #endif 16729566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant)); 16739566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant)); 167463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1675e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1676beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 16774bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 1678e729f68cSMatthew G. Knepley } 1679e729f68cSMatthew G. Knepley } 168023f34ed2SToby Isaac } 1681beaa55a6SMatthew G. Knepley fieldOffset += Nb; 16829c3cf19fSMatthew G. Knepley qc += Nc; 1683e729f68cSMatthew G. Knepley } 16849566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 16859566063dSJacob Faibussowitsch PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES)); 1686e729f68cSMatthew G. Knepley } 16879566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ)); 16889566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 16899566063dSJacob Faibussowitsch PetscCall(VecSqrtAbs(D)); 1690e729f68cSMatthew G. Knepley PetscFunctionReturn(0); 1691e729f68cSMatthew G. Knepley } 1692e729f68cSMatthew G. Knepley 16935f0b18bfSMatthew G. Knepley /*@ 16945f0b18bfSMatthew G. Knepley DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1, and stores it in a Vec. 16955f0b18bfSMatthew G. Knepley 16965f0b18bfSMatthew G. Knepley Collective on dm 16975f0b18bfSMatthew G. Knepley 16985f0b18bfSMatthew G. Knepley Input Parameters: 16995f0b18bfSMatthew G. Knepley + dm - The DM 17005f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 17015f0b18bfSMatthew G. Knepley 17025f0b18bfSMatthew G. Knepley Output Parameter: 17035f0b18bfSMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the function 17045f0b18bfSMatthew G. Knepley 17055f0b18bfSMatthew G. Knepley Notes: 17065f0b18bfSMatthew G. Knepley u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume 17075f0b18bfSMatthew G. Knepley 17085f0b18bfSMatthew G. Knepley Level: developer 17095f0b18bfSMatthew G. Knepley 1710db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 17115f0b18bfSMatthew G. Knepley @*/ 17125f0b18bfSMatthew G. Knepley PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC) 17135f0b18bfSMatthew G. Knepley { 17145f0b18bfSMatthew G. Knepley PetscInt debug = ((DM_Plex *) dm->data)->printFEM; 17155f0b18bfSMatthew G. Knepley DM dmc; 17165f0b18bfSMatthew G. Knepley PetscQuadrature quad; 17175f0b18bfSMatthew G. Knepley PetscScalar *interpolant, *valsum; 17185f0b18bfSMatthew G. Knepley PetscFEGeom fegeom; 17195f0b18bfSMatthew G. Knepley PetscReal *coords; 17205f0b18bfSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 17215f0b18bfSMatthew G. Knepley PetscInt dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v; 17225f0b18bfSMatthew G. Knepley 17235f0b18bfSMatthew G. Knepley PetscFunctionBegin; 17249566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 17259566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmc)); 17269566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 17279566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 17289566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 17295f0b18bfSMatthew G. Knepley fegeom.dimEmbed = cdim; 17309566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 17315f0b18bfSMatthew G. Knepley PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 17325f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 17335f0b18bfSMatthew G. Knepley PetscObject obj; 17345f0b18bfSMatthew G. Knepley PetscClassId id; 17355f0b18bfSMatthew G. Knepley PetscInt fNc; 17365f0b18bfSMatthew G. Knepley 17379566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 17389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 17395f0b18bfSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 17405f0b18bfSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 17415f0b18bfSMatthew G. Knepley 17429566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 17439566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &fNc)); 17445f0b18bfSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 17455f0b18bfSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 17465f0b18bfSMatthew G. Knepley 17479566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 17489566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &fNc)); 174963a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 17505f0b18bfSMatthew G. Knepley Nc += fNc; 17515f0b18bfSMatthew G. Knepley } 17529566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 175363a3b9bcSJacob Faibussowitsch PetscCheck(qNc == 1,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc); 17549566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(Nc*2, &valsum, Nc, &interpolant, cdim*Nq, &coords, Nq, &fegeom.detJ, cdim*cdim*Nq, &fegeom.J, cdim*cdim*Nq, &fegeom.invJ)); 17559566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 17569566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 17575f0b18bfSMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 17585f0b18bfSMatthew G. Knepley PetscScalar volsum = 0.0; 17595f0b18bfSMatthew G. Knepley PetscInt *star = NULL; 17605f0b18bfSMatthew G. Knepley PetscInt starSize, st, fc; 17615f0b18bfSMatthew G. Knepley 17629566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(valsum, Nc)); 17639566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 17645f0b18bfSMatthew G. Knepley for (st = 0; st < starSize*2; st += 2) { 17655f0b18bfSMatthew G. Knepley const PetscInt cell = star[st]; 17665f0b18bfSMatthew G. Knepley PetscScalar *val = &valsum[Nc]; 17675f0b18bfSMatthew G. Knepley PetscScalar *x = NULL; 17685f0b18bfSMatthew G. Knepley PetscReal vol = 0.0; 17695f0b18bfSMatthew G. Knepley PetscInt foff = 0; 17705f0b18bfSMatthew G. Knepley 17715f0b18bfSMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 17729566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 17739566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 17745f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 17755f0b18bfSMatthew G. Knepley PetscObject obj; 17765f0b18bfSMatthew G. Knepley PetscClassId id; 17775f0b18bfSMatthew G. Knepley PetscInt Nb, fNc, q; 17785f0b18bfSMatthew G. Knepley 17799566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(val, Nc)); 17809566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 17819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 17829566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) {PetscCall(PetscFEGetNumComponents((PetscFE) obj, &fNc));PetscCall(PetscFEGetDimension((PetscFE) obj, &Nb));} 17839566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) {PetscCall(PetscFVGetNumComponents((PetscFV) obj, &fNc));Nb = 1;} 178463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 17855f0b18bfSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 17865f0b18bfSMatthew G. Knepley const PetscReal wt = quadWeights[q]*fegeom.detJ[q]; 17875f0b18bfSMatthew G. Knepley PetscFEGeom qgeom; 17885f0b18bfSMatthew G. Knepley 17895f0b18bfSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 17905f0b18bfSMatthew G. Knepley qgeom.J = &fegeom.J[q*cdim*cdim]; 17915f0b18bfSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*cdim*cdim]; 17925f0b18bfSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 179363a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double) fegeom.detJ[q], cell, q); 17949566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE) obj, &x[foff], &qgeom, q, interpolant)); 179563a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 17965f0b18bfSMatthew G. Knepley for (fc = 0; fc < fNc; ++fc) val[foff+fc] += interpolant[fc]*wt; 17975f0b18bfSMatthew G. Knepley vol += wt; 17985f0b18bfSMatthew G. Knepley } 17995f0b18bfSMatthew G. Knepley foff += Nb; 18005f0b18bfSMatthew G. Knepley } 18019566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 18025f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc]; 18035f0b18bfSMatthew G. Knepley volsum += vol; 18045f0b18bfSMatthew G. Knepley if (debug) { 18059566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell)); 18065f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 18079566063dSJacob Faibussowitsch if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 18089566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double) PetscRealPart(val[fc]))); 18095f0b18bfSMatthew G. Knepley } 18109566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 18115f0b18bfSMatthew G. Knepley } 18125f0b18bfSMatthew G. Knepley } 18135f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum; 18149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 18159566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES)); 18165f0b18bfSMatthew G. Knepley } 18179566063dSJacob Faibussowitsch PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 18185f0b18bfSMatthew G. Knepley PetscFunctionReturn(0); 18195f0b18bfSMatthew G. Knepley } 18205f0b18bfSMatthew G. Knepley 18215f0b18bfSMatthew G. Knepley /*@ 18221555c271SMatthew G. Knepley DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1, and stores it in a Vec. 18231555c271SMatthew G. Knepley 1824d083f849SBarry Smith Collective on dm 1825c0f8e1fdSMatthew G. Knepley 18261555c271SMatthew G. Knepley Input Parameters: 18271555c271SMatthew G. Knepley + dm - The DM 18285f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 18291555c271SMatthew G. Knepley 18301555c271SMatthew G. Knepley Output Parameter: 18311555c271SMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the gradient 18321555c271SMatthew G. Knepley 183395452b02SPatrick Sanan Notes: 18341555c271SMatthew G. Knepley \nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume 18351555c271SMatthew G. Knepley 18361555c271SMatthew G. Knepley Level: developer 18371555c271SMatthew G. Knepley 1838db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 18391555c271SMatthew G. Knepley @*/ 18401555c271SMatthew G. Knepley PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 18411555c271SMatthew G. Knepley { 1842db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1843db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 18441555c271SMatthew G. Knepley DM dmC; 18451555c271SMatthew G. Knepley PetscQuadrature quad; 18461555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 18474bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 18484bee2e38SMatthew G. Knepley PetscReal *coords; 18491555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1850485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 18511555c271SMatthew G. Knepley 18521555c271SMatthew G. Knepley PetscFunctionBegin; 18539566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 18549566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmC)); 18559566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 18569566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 18584bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 18599566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 18605f80ce2aSJacob Faibussowitsch PetscCheck(numFields,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 18611555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 18621555c271SMatthew G. Knepley PetscObject obj; 18631555c271SMatthew G. Knepley PetscClassId id; 18641555c271SMatthew G. Knepley PetscInt Nc; 18651555c271SMatthew G. Knepley 18669566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 18679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 18681555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 18691555c271SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 18701555c271SMatthew G. Knepley 18719566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 18729566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 18731555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 18741555c271SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 18751555c271SMatthew G. Knepley 18769566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 18779566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 187863a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 18791555c271SMatthew G. Knepley numComponents += Nc; 18801555c271SMatthew G. Knepley } 18819566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 188263a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents),PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 18839566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(coordDim*numComponents*2,&gradsum,coordDim*numComponents,&interpolant,coordDim*Nq,&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ)); 18849566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 18859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 18861555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 18871555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 18881555c271SMatthew G. Knepley PetscInt *star = NULL; 18891555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 18901555c271SMatthew G. Knepley 18919566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(gradsum, coordDim*numComponents)); 18929566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 18931555c271SMatthew G. Knepley for (st = 0; st < starSize*2; st += 2) { 18941555c271SMatthew G. Knepley const PetscInt cell = star[st]; 18951555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim*numComponents]; 18961555c271SMatthew G. Knepley PetscScalar *x = NULL; 18971555c271SMatthew G. Knepley PetscReal vol = 0.0; 18981555c271SMatthew G. Knepley 18991555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 19009566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 19019566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 19021555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 19031555c271SMatthew G. Knepley PetscObject obj; 19041555c271SMatthew G. Knepley PetscClassId id; 19051555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 19061555c271SMatthew G. Knepley 19079566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(grad, coordDim*numComponents)); 19089566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 19099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19109566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) {PetscCall(PetscFEGetNumComponents((PetscFE) obj, &Nc));PetscCall(PetscFEGetDimension((PetscFE) obj, &Nb));} 19119566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) {PetscCall(PetscFVGetNumComponents((PetscFV) obj, &Nc));Nb = 1;} 191263a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19131555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 19142a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 19152a4e142eSMatthew G. Knepley 19162a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 19172a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 19182a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 19192a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 192063a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 19219566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE) obj, 1, &x[fieldOffset], &qgeom, q, interpolant)); 192263a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19231555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 192453d2db2dSJoe Wallwork const PetscReal wt = quadWeights[q*qNc+qc]; 19251555c271SMatthew G. Knepley 19264bee2e38SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc*coordDim+d] += interpolant[fc*dim+d]*wt*fegeom.detJ[q]; 19271555c271SMatthew G. Knepley } 19284bee2e38SMatthew G. Knepley vol += quadWeights[q*qNc]*fegeom.detJ[q]; 19291555c271SMatthew G. Knepley } 19301555c271SMatthew G. Knepley fieldOffset += Nb; 19311555c271SMatthew G. Knepley qc += Nc; 19321555c271SMatthew G. Knepley } 19339566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 1934f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 1935f8527842SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 1936f8527842SMatthew G. Knepley gradsum[fc*coordDim+d] += grad[fc*coordDim+d]; 1937f8527842SMatthew G. Knepley } 1938f8527842SMatthew G. Knepley } 1939f8527842SMatthew G. Knepley volsum += vol; 1940db1066baSMatthew G. Knepley if (debug) { 19419566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell)); 19421555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 19431555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 19449566063dSJacob Faibussowitsch if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 19459566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc*coordDim+d]))); 19461555c271SMatthew G. Knepley } 19471555c271SMatthew G. Knepley } 19489566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 1949db1066baSMatthew G. Knepley } 19501555c271SMatthew G. Knepley } 19511555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 19521555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc*coordDim+d] /= volsum; 19531555c271SMatthew G. Knepley } 19549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 19559566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 19561555c271SMatthew G. Knepley } 19579566063dSJacob Faibussowitsch PetscCall(PetscFree6(gradsum,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ)); 19581555c271SMatthew G. Knepley PetscFunctionReturn(0); 19591555c271SMatthew G. Knepley } 19601555c271SMatthew G. Knepley 1961338f77d5SMatthew G. Knepley static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 196273d901b8SMatthew G. Knepley { 1963338f77d5SMatthew G. Knepley DM dmAux = NULL; 196461aaff12SToby Isaac PetscDS prob, probAux = NULL; 196573d901b8SMatthew G. Knepley PetscSection section, sectionAux; 1966338f77d5SMatthew G. Knepley Vec locX, locA; 1967c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 1968c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 1969338f77d5SMatthew G. Knepley /* DS */ 1970338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 1971338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 1972338f77d5SMatthew G. Knepley PetscScalar *u, *a; 1973338f77d5SMatthew G. Knepley const PetscScalar *constants; 1974338f77d5SMatthew G. Knepley /* Geometry */ 1975c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 1976338f77d5SMatthew G. Knepley DM dmGrad; 1977c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 1978338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 1979b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 1980338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 1981b7260050SToby Isaac PetscInt maxDegree; 1982c330f8ffSToby Isaac DMField coordField; 1983c330f8ffSToby Isaac IS cellIS; 198473d901b8SMatthew G. Knepley 198573d901b8SMatthew G. Knepley PetscFunctionBegin; 19869566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 19879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19889566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 19899566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1990338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 1991b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1992b5a3613cSMatthew G. Knepley PetscObject obj; 1993b5a3613cSMatthew G. Knepley PetscClassId id; 1994b5a3613cSMatthew G. Knepley 19959566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 19969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1997338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 1998338f77d5SMatthew G. Knepley } 1999338f77d5SMatthew G. Knepley /* Get local solution with boundary values */ 20009566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 20019566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 20029566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 20039566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 2004338f77d5SMatthew G. Knepley /* Read DS information */ 20059566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 20069566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 20079566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 20089566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF,numCells,cStart,1,&cellIS)); 20099566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 2010338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 20119566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 20129a2a23afSMatthew G. Knepley if (locA) { 20139566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 20149566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 20159566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 20169566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 20179566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 20189566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 2019338f77d5SMatthew G. Knepley } 2020338f77d5SMatthew G. Knepley /* Allocate data arrays */ 20219566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numCells*totDim, &u)); 20229566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells*totDimAux, &a)); 2023338f77d5SMatthew G. Knepley /* Read out geometry */ 20249566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm,&coordField)); 20259566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree)); 2026b7260050SToby Isaac if (maxDegree <= 1) { 20279566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad)); 2028c330f8ffSToby Isaac if (affineQuad) { 20299566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&cgeomFEM)); 2030338f77d5SMatthew G. Knepley } 2031b5a3613cSMatthew G. Knepley } 2032b5a3613cSMatthew G. Knepley if (useFVM) { 2033338f77d5SMatthew G. Knepley PetscFV fv = NULL; 2034b5a3613cSMatthew G. Knepley Vec grad; 2035b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 2036b5a3613cSMatthew G. Knepley PetscBool compGrad; 2037b5a3613cSMatthew G. Knepley 2038338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2039338f77d5SMatthew G. Knepley PetscObject obj; 2040338f77d5SMatthew G. Knepley PetscClassId id; 2041338f77d5SMatthew G. Knepley 20429566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 20439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2044338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) {fv = (PetscFV) obj; break;} 2045338f77d5SMatthew G. Knepley } 20469566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &compGrad)); 20479566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE)); 20489566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM)); 20499566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad)); 20509566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, compGrad)); 20519566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM)); 2052b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 20539566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 20549566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 20559566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 2056b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 20579566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 20589566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 20599566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 20609566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 2061b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 20629566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad)); 20639566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 2064b5a3613cSMatthew G. Knepley } 2065338f77d5SMatthew G. Knepley /* Read out data from inputs */ 206673d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 206773d901b8SMatthew G. Knepley PetscScalar *x = NULL; 206873d901b8SMatthew G. Knepley PetscInt i; 206973d901b8SMatthew G. Knepley 20709566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x)); 20710f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 20729566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x)); 207373d901b8SMatthew G. Knepley if (dmAux) { 20749566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x)); 20750f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 20769566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x)); 207773d901b8SMatthew G. Knepley } 207873d901b8SMatthew G. Knepley } 2079338f77d5SMatthew G. Knepley /* Do integration for each field */ 208073d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2081c1f031eeSMatthew G. Knepley PetscObject obj; 2082c1f031eeSMatthew G. Knepley PetscClassId id; 2083c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 208473d901b8SMatthew G. Knepley 20859566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 20869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2087c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2088c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 2089c1f031eeSMatthew G. Knepley PetscQuadrature q; 2090c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 2091c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 2092c1f031eeSMatthew G. Knepley 20939566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 20949566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 20959566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 20969566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 2097c1f031eeSMatthew G. Knepley blockSize = Nb*Nq; 209873d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 20999566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 210073d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 210173d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 210273d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 210373d901b8SMatthew G. Knepley offset = numCells - Nr; 2104c330f8ffSToby Isaac if (!affineQuad) { 21059566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField,cellIS,q,PETSC_FALSE,&cgeomFEM)); 2106c330f8ffSToby Isaac } 21079566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM,0,offset,&chunkGeom)); 21089566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral)); 21099566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM,offset,numCells,&chunkGeom)); 21109566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset*totDim], probAux, &a[offset*totDimAux], &cintegral[offset*Nf])); 21119566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM,offset,numCells,&chunkGeom)); 2112c330f8ffSToby Isaac if (!affineQuad) { 21139566063dSJacob Faibussowitsch PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 2114c330f8ffSToby Isaac } 2115c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 2116c1f031eeSMatthew G. Knepley PetscInt foff; 2117420e96edSMatthew G. Knepley PetscPointFunc obj_func; 2118b69edc29SMatthew G. Knepley PetscScalar lint; 2119c1f031eeSMatthew G. Knepley 21209566063dSJacob Faibussowitsch PetscCall(PetscDSGetObjective(prob, f, &obj_func)); 21219566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, f, &foff)); 2122c1f031eeSMatthew G. Knepley if (obj_func) { 2123c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 2124b5a3613cSMatthew G. Knepley PetscScalar *u_x; 2125b5a3613cSMatthew G. Knepley 21269566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x)); 2127338f77d5SMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, &a[totDimAux*c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 2128338f77d5SMatthew G. Knepley cintegral[c*Nf+f] += PetscRealPart(lint)*cgeomFVM[c].volume; 212973d901b8SMatthew G. Knepley } 2130c1f031eeSMatthew G. Knepley } 213163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 2132c1f031eeSMatthew G. Knepley } 2133338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 2134b5a3613cSMatthew G. Knepley if (useFVM) { 21359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 21369566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM)); 21379566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 21389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&faceGeometryFVM)); 21399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cellGeometryFVM)); 21409566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmGrad)); 2141b5a3613cSMatthew G. Knepley } 21429566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscFree(a)); 21439566063dSJacob Faibussowitsch PetscCall(PetscFree(u)); 2144338f77d5SMatthew G. Knepley /* Cleanup */ 2145f99c8401SToby Isaac if (affineQuad) { 21469566063dSJacob Faibussowitsch PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 2147f99c8401SToby Isaac } 21489566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 21499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 21509566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 2151338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 2152338f77d5SMatthew G. Knepley } 2153338f77d5SMatthew G. Knepley 2154338f77d5SMatthew G. Knepley /*@ 2155338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 2156338f77d5SMatthew G. Knepley 2157338f77d5SMatthew G. Knepley Input Parameters: 2158338f77d5SMatthew G. Knepley + dm - The mesh 2159338f77d5SMatthew G. Knepley . X - Global input vector 2160338f77d5SMatthew G. Knepley - user - The user context 2161338f77d5SMatthew G. Knepley 2162338f77d5SMatthew G. Knepley Output Parameter: 2163338f77d5SMatthew G. Knepley . integral - Integral for each field 2164338f77d5SMatthew G. Knepley 2165338f77d5SMatthew G. Knepley Level: developer 2166338f77d5SMatthew G. Knepley 2167db781477SPatrick Sanan .seealso: `DMPlexSNESComputeResidualFEM()` 2168338f77d5SMatthew G. Knepley @*/ 2169b8feb594SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 2170338f77d5SMatthew G. Knepley { 2171338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 2172b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 2173412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 2174338f77d5SMatthew G. Knepley 2175338f77d5SMatthew G. Knepley PetscFunctionBegin; 2176338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2177338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2178dadcf809SJacob Faibussowitsch PetscValidScalarPointer(integral, 3); 21799566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0)); 21809566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 21819566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 21829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2183338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 21849566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd-cStart)*Nf, &cintegral)); 21859566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user)); 2186338f77d5SMatthew G. Knepley /* Sum up values */ 2187338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2188338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2189338f77d5SMatthew G. Knepley 21909566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf])); 2191b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c*Nf+f]; 2192338f77d5SMatthew G. Knepley } 21931c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject) dm))); 219473d901b8SMatthew G. Knepley if (mesh->printFEM) { 21959566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject) dm), "Integral:")); 21969566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", (double) PetscRealPart(integral[f]))); 21979566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject) dm), "\n")); 219873d901b8SMatthew G. Knepley } 21999566063dSJacob Faibussowitsch PetscCall(PetscFree2(lintegral, cintegral)); 22009566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0)); 2201338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 2202338f77d5SMatthew G. Knepley } 2203338f77d5SMatthew G. Knepley 2204338f77d5SMatthew G. Knepley /*@ 2205338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 2206338f77d5SMatthew G. Knepley 2207338f77d5SMatthew G. Knepley Input Parameters: 2208338f77d5SMatthew G. Knepley + dm - The mesh 2209338f77d5SMatthew G. Knepley . X - Global input vector 2210338f77d5SMatthew G. Knepley - user - The user context 2211338f77d5SMatthew G. Knepley 2212338f77d5SMatthew G. Knepley Output Parameter: 2213338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field 2214338f77d5SMatthew G. Knepley 2215338f77d5SMatthew G. Knepley Level: developer 2216338f77d5SMatthew G. Knepley 2217db781477SPatrick Sanan .seealso: `DMPlexSNESComputeResidualFEM()` 2218338f77d5SMatthew G. Knepley @*/ 2219338f77d5SMatthew G. Knepley PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 2220338f77d5SMatthew G. Knepley { 2221338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 2222338f77d5SMatthew G. Knepley DM dmF; 2223338f77d5SMatthew G. Knepley PetscSection sectionF; 2224338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 2225412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 2226338f77d5SMatthew G. Knepley 2227338f77d5SMatthew G. Knepley PetscFunctionBegin; 2228338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2229338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2230338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 22319566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0)); 22329566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 22339566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 22349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2235338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 22369566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((cEnd-cStart)*Nf, &cintegral)); 22379566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user)); 2238338f77d5SMatthew G. Knepley /* Put values in F*/ 22399566063dSJacob Faibussowitsch PetscCall(VecGetDM(F, &dmF)); 22409566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmF, §ionF)); 22419566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &af)); 2242338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2243338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2244338f77d5SMatthew G. Knepley PetscInt dof, off; 2245338f77d5SMatthew G. Knepley 22469566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf])); 22479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionF, cell, &dof)); 22489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionF, cell, &off)); 224963a3b9bcSJacob Faibussowitsch PetscCheck(dof == Nf,PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf); 2250338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off+f] = cintegral[c*Nf+f]; 2251338f77d5SMatthew G. Knepley } 22529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &af)); 22539566063dSJacob Faibussowitsch PetscCall(PetscFree(cintegral)); 22549566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0)); 225573d901b8SMatthew G. Knepley PetscFunctionReturn(0); 225673d901b8SMatthew G. Knepley } 225773d901b8SMatthew G. Knepley 22589b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, 22599b6f715bSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 226064c72086SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 226164c72086SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 226264c72086SMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 226364c72086SMatthew G. Knepley PetscScalar *fintegral, void *user) 226464c72086SMatthew G. Knepley { 22659b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 2266a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 22679b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 22689b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 22699b6f715bSMatthew G. Knepley Vec locA = NULL; 22709b6f715bSMatthew G. Knepley DMField coordField; 22719b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 22729b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 22739b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 227464c72086SMatthew G. Knepley const PetscScalar *constants; 22759b6f715bSMatthew G. Knepley PetscInt numConstants, f; 227664c72086SMatthew G. Knepley 227764c72086SMatthew G. Knepley PetscFunctionBegin; 22789566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 22799566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 22809566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 22819566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 22829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 228364c72086SMatthew G. Knepley /* Determine which discretizations we have */ 22849b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 228564c72086SMatthew G. Knepley PetscObject obj; 228664c72086SMatthew G. Knepley PetscClassId id; 228764c72086SMatthew G. Knepley 22889566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 22899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 229063a3b9bcSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID,PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f); 229164c72086SMatthew G. Knepley } 229264c72086SMatthew G. Knepley /* Read DS information */ 22939566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 22949566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 22959566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 22969566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 229764c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 22989566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 22999b6f715bSMatthew G. Knepley if (locA) { 23009b6f715bSMatthew G. Knepley DM dmAux; 23019b6f715bSMatthew G. Knepley 23029566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 23039566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 23049566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 23059566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 23069566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 23079566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 23089566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 23099566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 231064c72086SMatthew G. Knepley } 23119b6f715bSMatthew G. Knepley /* Integrate over points */ 23129b6f715bSMatthew G. Knepley { 23139b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 2314b7260050SToby Isaac PetscInt maxDegree; 23159b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 23169b6f715bSMatthew G. Knepley const PetscInt *points; 23179b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 23189b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 231964c72086SMatthew G. Knepley 23209566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 23219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 23229566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFaces*totDim, &u, locA ? numFaces*totDimAux : 0, &a)); 23239566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 232464c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 232564c72086SMatthew G. Knepley PetscFE fe; 232664c72086SMatthew G. Knepley 23279566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *) &fe)); 23289566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 23299b6f715bSMatthew G. Knepley if (!qGeom) { 23309566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 23319566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) qGeom)); 23329b6f715bSMatthew G. Knepley } 23339566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 23349566063dSJacob Faibussowitsch PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 23359b6f715bSMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 2336f15274beSMatthew Knepley const PetscInt point = points[face], *support; 23379b6f715bSMatthew G. Knepley PetscScalar *x = NULL; 2338f15274beSMatthew Knepley PetscInt i; 23399b6f715bSMatthew G. Knepley 23409566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 23419566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 23429b6f715bSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face*totDim+i] = x[i]; 23439566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 23449b6f715bSMatthew G. Knepley if (locA) { 23459b6f715bSMatthew G. Knepley PetscInt subp; 23469566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 23479566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 23489b6f715bSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[f*totDimAux+i] = x[i]; 23499566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 23509b6f715bSMatthew G. Knepley } 23519b6f715bSMatthew G. Knepley } 23529b6f715bSMatthew G. Knepley /* Get blocking */ 23539b6f715bSMatthew G. Knepley { 23549b6f715bSMatthew G. Knepley PetscQuadrature q; 23559b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 23569b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 23579b6f715bSMatthew G. Knepley 23589566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 23599566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 23609566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 23619566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 236264c72086SMatthew G. Knepley blockSize = Nb*Nq; 236364c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 23649b6f715bSMatthew G. Knepley chunkSize = numBatches*batchSize; 23659566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 23669b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 23679b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 236864c72086SMatthew G. Knepley offset = numFaces - Nr; 236964c72086SMatthew G. Knepley } 23709b6f715bSMatthew G. Knepley /* Do integration for each field */ 23719b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 23729566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, chunk*chunkSize, (chunk+1)*chunkSize, &chunkGeom)); 23739566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral)); 23749566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 237564c72086SMatthew G. Knepley } 23769566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 23779566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset*totDim], probAux, a ? &a[offset*totDimAux] : NULL, &fintegral[offset*Nf])); 23789566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 237964c72086SMatthew G. Knepley /* Cleanup data arrays */ 23809566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 23819566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 23829566063dSJacob Faibussowitsch PetscCall(PetscFree2(u, a)); 23839566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 238464c72086SMatthew G. Knepley } 238564c72086SMatthew G. Knepley } 23869566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 23879566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 23889b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 23899b6f715bSMatthew G. Knepley } 23909b6f715bSMatthew G. Knepley 23919b6f715bSMatthew G. Knepley /*@ 23929b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 23939b6f715bSMatthew G. Knepley 23949b6f715bSMatthew G. Knepley Input Parameters: 23959b6f715bSMatthew G. Knepley + dm - The mesh 23969b6f715bSMatthew G. Knepley . X - Global input vector 23979b6f715bSMatthew G. Knepley . label - The boundary DMLabel 23989b6f715bSMatthew G. Knepley . numVals - The number of label values to use, or PETSC_DETERMINE for all values 23999b6f715bSMatthew G. Knepley . vals - The label values to use, or PETSC_NULL for all values 240067b8a455SSatish Balay . func - The function to integrate along the boundary 24019b6f715bSMatthew G. Knepley - user - The user context 24029b6f715bSMatthew G. Knepley 24039b6f715bSMatthew G. Knepley Output Parameter: 24049b6f715bSMatthew G. Knepley . integral - Integral for each field 24059b6f715bSMatthew G. Knepley 24069b6f715bSMatthew G. Knepley Level: developer 24079b6f715bSMatthew G. Knepley 2408db781477SPatrick Sanan .seealso: `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()` 24099b6f715bSMatthew G. Knepley @*/ 24109b6f715bSMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], 24119b6f715bSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 24129b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 24139b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 24149b6f715bSMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 24159b6f715bSMatthew G. Knepley PetscScalar *integral, void *user) 24169b6f715bSMatthew G. Knepley { 24179b6f715bSMatthew G. Knepley Vec locX; 24189b6f715bSMatthew G. Knepley PetscSection section; 24199b6f715bSMatthew G. Knepley DMLabel depthLabel; 24209b6f715bSMatthew G. Knepley IS facetIS; 24219b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 24229b6f715bSMatthew G. Knepley 24239b6f715bSMatthew G. Knepley PetscFunctionBegin; 24249b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24259b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 24269b6f715bSMatthew G. Knepley PetscValidPointer(label, 3); 2427dadcf809SJacob Faibussowitsch if (vals) PetscValidIntPointer(vals, 5); 2428dadcf809SJacob Faibussowitsch PetscValidScalarPointer(integral, 7); 24299566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0)); 24309566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 24319566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24329566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim-1, &facetIS)); 24339566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 24349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 24359b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 24369566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 24379566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 24389566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 24399566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 24409b6f715bSMatthew G. Knepley /* Loop over label values */ 24419566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(integral, Nf)); 24429b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 24439b6f715bSMatthew G. Knepley IS pointIS; 24449b6f715bSMatthew G. Knepley PetscInt numFaces, face; 24459b6f715bSMatthew G. Knepley PetscScalar *fintegral; 24469b6f715bSMatthew G. Knepley 24479566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS)); 24489b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 24499b6f715bSMatthew G. Knepley { 24509b6f715bSMatthew G. Knepley IS isectIS; 24519b6f715bSMatthew G. Knepley 24529b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 24539566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 24549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 24559b6f715bSMatthew G. Knepley pointIS = isectIS; 24569b6f715bSMatthew G. Knepley } 24579566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 24589566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numFaces*Nf, &fintegral)); 24599566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user)); 24609b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 24619b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face*Nf+f]; 24629566063dSJacob Faibussowitsch PetscCall(PetscFree(fintegral)); 24639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 24649b6f715bSMatthew G. Knepley } 24659566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 24669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 24679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0)); 246864c72086SMatthew G. Knepley PetscFunctionReturn(0); 246964c72086SMatthew G. Knepley } 247064c72086SMatthew G. Knepley 2471d69c5d34SMatthew G. Knepley /*@ 2472cf51de39SMatthew G. Knepley DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to a uniformly refined DM. 2473d69c5d34SMatthew G. Knepley 2474d69c5d34SMatthew G. Knepley Input Parameters: 2475cf51de39SMatthew G. Knepley + dmc - The coarse mesh 2476cf51de39SMatthew G. Knepley . dmf - The fine mesh 2477cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology 2478d69c5d34SMatthew G. Knepley - user - The user context 2479d69c5d34SMatthew G. Knepley 2480d69c5d34SMatthew G. Knepley Output Parameter: 2481934789fcSMatthew G. Knepley . In - The interpolation matrix 2482d69c5d34SMatthew G. Knepley 2483d69c5d34SMatthew G. Knepley Level: developer 2484d69c5d34SMatthew G. Knepley 2485db781477SPatrick Sanan .seealso: `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 2486d69c5d34SMatthew G. Knepley @*/ 2487cf51de39SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user) 2488d69c5d34SMatthew G. Knepley { 2489d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 2490d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 2491d69c5d34SMatthew G. Knepley PetscFE *feRef; 249297c42addSMatthew G. Knepley PetscFV *fvRef; 2493d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2494d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2495d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 2496485ad865SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 24972ea9c922SToby Isaac PetscInt cTotDim = 0, rTotDim = 0; 2498d69c5d34SMatthew G. Knepley 2499d69c5d34SMatthew G. Knepley PetscFunctionBegin; 25009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0)); 25019566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 25029566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 25039566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 25049566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 25059566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 25069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 25079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 25089566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef)); 2509d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 25102ea9c922SToby Isaac PetscObject obj, objc; 25112ea9c922SToby Isaac PetscClassId id, idc; 25122ea9c922SToby Isaac PetscInt rNb = 0, Nc = 0, cNb = 0; 2513d69c5d34SMatthew G. Knepley 25149566063dSJacob Faibussowitsch PetscCall(DMGetField(dmf, f, NULL, &obj)); 25159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 251697c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 251797c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 251897c42addSMatthew G. Knepley 2519cf51de39SMatthew G. Knepley if (isRefined) { 25209566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 2521cf51de39SMatthew G. Knepley } else { 25229566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) fe)); 2523cf51de39SMatthew G. Knepley feRef[f] = fe; 2524cf51de39SMatthew G. Knepley } 25259566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &rNb)); 25269566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 252797c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 252897c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 252997c42addSMatthew G. Knepley PetscDualSpace Q; 253097c42addSMatthew G. Knepley 2531cf51de39SMatthew G. Knepley if (isRefined) { 25329566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 2533cf51de39SMatthew G. Knepley } else { 25349566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) fv)); 2535cf51de39SMatthew G. Knepley fvRef[f] = fv; 2536cf51de39SMatthew G. Knepley } 25379566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 25389566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &rNb)); 25399566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 25409566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 254197c42addSMatthew G. Knepley } 25429566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, f, NULL, &objc)); 25439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(objc, &idc)); 25442ea9c922SToby Isaac if (idc == PETSCFE_CLASSID) { 25452ea9c922SToby Isaac PetscFE fe = (PetscFE) objc; 25462ea9c922SToby Isaac 25479566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cNb)); 25482ea9c922SToby Isaac } else if (id == PETSCFV_CLASSID) { 25492ea9c922SToby Isaac PetscFV fv = (PetscFV) obj; 25502ea9c922SToby Isaac PetscDualSpace Q; 25512ea9c922SToby Isaac 25529566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 25539566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &cNb)); 2554d69c5d34SMatthew G. Knepley } 25552ea9c922SToby Isaac rTotDim += rNb; 25562ea9c922SToby Isaac cTotDim += cNb; 25572ea9c922SToby Isaac } 25589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rTotDim*cTotDim,&elemMat)); 25599566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, rTotDim*cTotDim)); 2560d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2561d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2562d69c5d34SMatthew G. Knepley PetscQuadrature f; 2563d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2564d69c5d34SMatthew G. Knepley PetscReal *points; 2565d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2566d69c5d34SMatthew G. Knepley 2567d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 256897c42addSMatthew G. Knepley if (feRef[fieldI]) { 25699566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref)); 25709566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc)); 257197c42addSMatthew G. Knepley } else { 25729566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref)); 25739566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc)); 257497c42addSMatthew G. Knepley } 25759566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim)); 2576d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 25779566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 25789566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL)); 2579d69c5d34SMatthew G. Knepley npoints += Np; 2580d69c5d34SMatthew G. Knepley } 25819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npoints*dim,&points)); 2582d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 25839566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 25849566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL)); 2585d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 2586d69c5d34SMatthew G. Knepley } 2587d69c5d34SMatthew G. Knepley 2588d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 258997c42addSMatthew G. Knepley PetscObject obj; 259097c42addSMatthew G. Knepley PetscClassId id; 25919c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 2592d69c5d34SMatthew G. Knepley 25939566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, fieldJ, NULL, &obj)); 25949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 259597c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 259697c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 2597ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 2598d69c5d34SMatthew G. Knepley 2599d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 26009566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &NcJ)); 26019566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 2602ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 2603ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 260463a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 26059566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T)); 2606d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26079566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26089566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 260963a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 2610d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 261136a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2612d172c84bSMatthew G. Knepley /* 2613d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 2614d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 2615d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 2616d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 2617d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 2618d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 2619d172c84bSMatthew G. Knepley */ 2620ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += T->T[0][k*cpdim*NcJ+j*Nc+c]*qweights[p*qNc+c]; 262136a6d9c0SMatthew G. Knepley } 2622d69c5d34SMatthew G. Knepley } 2623d69c5d34SMatthew G. Knepley } 26249566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 2625ffe73a53SMatthew G. Knepley } 262697c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 262797c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 262897c42addSMatthew G. Knepley 262997c42addSMatthew G. Knepley /* Evaluate constant function at points */ 26309566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcJ)); 263197c42addSMatthew G. Knepley cpdim = 1; 263297c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 263397c42addSMatthew G. Knepley if (fieldI == fieldJ) { 263463a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 263597c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26369566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26379566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 263863a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 263997c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 264097c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2641458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += 1.0*qweights[p*qNc+c]; 264297c42addSMatthew G. Knepley } 264397c42addSMatthew G. Knepley } 264497c42addSMatthew G. Knepley } 264597c42addSMatthew G. Knepley } 264697c42addSMatthew G. Knepley } 2647d172c84bSMatthew G. Knepley offsetJ += cpdim; 2648d69c5d34SMatthew G. Knepley } 2649d172c84bSMatthew G. Knepley offsetI += fpdim; 26509566063dSJacob Faibussowitsch PetscCall(PetscFree(points)); 2651d69c5d34SMatthew G. Knepley } 26529566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat)); 26537f5b169aSMatthew G. Knepley /* Preallocate matrix */ 26547f5b169aSMatthew G. Knepley { 2655c094ef40SMatthew G. Knepley Mat preallocator; 2656c094ef40SMatthew G. Knepley PetscScalar *vals; 2657c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 2658c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 26597f5b169aSMatthew G. Knepley 26609566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 26619566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject) In), &preallocator)); 26629566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 26639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 26649566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 26659566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices)); 26667f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2667cf51de39SMatthew G. Knepley if (isRefined) { 26689566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices)); 26699566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES)); 2670cf51de39SMatthew G. Knepley } else { 26719566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, preallocator, cell, vals, INSERT_VALUES)); 2672cf51de39SMatthew G. Knepley } 26737f5b169aSMatthew G. Knepley } 26749566063dSJacob Faibussowitsch PetscCall(PetscFree3(vals,cellCIndices,cellFIndices)); 26759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 26769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 26779566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In)); 26789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 26797f5b169aSMatthew G. Knepley } 26807f5b169aSMatthew G. Knepley /* Fill matrix */ 26819566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(In)); 2682d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2683cf51de39SMatthew G. Knepley if (isRefined) { 26849566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 2685cf51de39SMatthew G. Knepley } else { 26869566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 2687cf51de39SMatthew G. Knepley } 2688d69c5d34SMatthew G. Knepley } 26899566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f])); 26909566063dSJacob Faibussowitsch PetscCall(PetscFree2(feRef,fvRef)); 26919566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 26929566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 26939566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 26949318fe57SMatthew G. Knepley if (mesh->printFEM > 1) { 26959566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name)); 26969566063dSJacob Faibussowitsch PetscCall(MatChop(In, 1.0e-10)); 26979566063dSJacob Faibussowitsch PetscCall(MatView(In, NULL)); 2698d69c5d34SMatthew G. Knepley } 26999566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0)); 2700d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 2701d69c5d34SMatthew G. Knepley } 27026c73c22cSMatthew G. Knepley 2703bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 2704bd041c0cSMatthew G. Knepley { 2705bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dmc), PETSC_ERR_SUP, "Laziness"); 2706bd041c0cSMatthew G. Knepley } 2707bd041c0cSMatthew G. Knepley 270868132eb9SMatthew G. Knepley /*@ 270968132eb9SMatthew G. Knepley DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM. 271068132eb9SMatthew G. Knepley 271168132eb9SMatthew G. Knepley Input Parameters: 271268132eb9SMatthew G. Knepley + dmf - The fine mesh 271368132eb9SMatthew G. Knepley . dmc - The coarse mesh 271468132eb9SMatthew G. Knepley - user - The user context 271568132eb9SMatthew G. Knepley 271668132eb9SMatthew G. Knepley Output Parameter: 271768132eb9SMatthew G. Knepley . In - The interpolation matrix 271868132eb9SMatthew G. Knepley 271968132eb9SMatthew G. Knepley Level: developer 272068132eb9SMatthew G. Knepley 2721db781477SPatrick Sanan .seealso: `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 272268132eb9SMatthew G. Knepley @*/ 272368132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 27244ef9d792SMatthew G. Knepley { 272564e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 272664e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 27274ef9d792SMatthew G. Knepley PetscDS prob; 2728a0806964SMatthew G. Knepley Mat interp; 2729a0806964SMatthew G. Knepley PetscSection fsection, globalFSection; 2730a0806964SMatthew G. Knepley PetscSection csection, globalCSection; 2731a0806964SMatthew G. Knepley PetscInt locRows, locCols; 27324ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 27334ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 27344ef9d792SMatthew G. Knepley PetscScalar *elemMat; 2735a0806964SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s; 27364ef9d792SMatthew G. Knepley 27374ef9d792SMatthew G. Knepley PetscFunctionBegin; 27389566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0)); 27399566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 27409566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 27419566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 27429566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 27439566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ)); 27449566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc)); 27459566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 27469566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 27479566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 27489566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 2749a0806964SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd)); 27509566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 27519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 27524ef9d792SMatthew G. Knepley 2753a0806964SMatthew G. Knepley PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 2754a0806964SMatthew G. Knepley PetscCall(MatCreate(PetscObjectComm((PetscObject) In), &interp)); 2755a0806964SMatthew G. Knepley PetscCall(MatSetType(interp, MATPREALLOCATOR)); 2756a0806964SMatthew G. Knepley PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 2757a0806964SMatthew G. Knepley PetscCall(MatSetUp(interp)); 2758a0806964SMatthew G. Knepley for (s = 0; s < 2; ++s) { 27594ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 27604ef9d792SMatthew G. Knepley PetscObject obj; 27614ef9d792SMatthew G. Knepley PetscClassId id; 2762c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 2763ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 27644ef9d792SMatthew G. Knepley PetscQuadrature f; 27654ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2766d0f6233fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, off, i, d; 27674ef9d792SMatthew G. Knepley 2768d0f6233fSMatthew G. Knepley PetscCall(PetscDSGetFieldOffset(prob, field, &off)); 27699566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 27709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 27714ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 27724ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 27734ef9d792SMatthew G. Knepley 27749566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(fe, &Q)); 27759566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 2776a0806964SMatthew G. Knepley if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T)); 27774ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 27784ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 27794ef9d792SMatthew G. Knepley 27809566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 27814ef9d792SMatthew G. Knepley Nc = 1; 278263a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject) dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 27839566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fpdim)); 27844ef9d792SMatthew G. Knepley /* For each fine grid cell */ 27854ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 27864ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 27874ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 27884ef9d792SMatthew G. Knepley 27899566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 27909566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 2791d0f6233fSMatthew G. Knepley PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim); 27924ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 27934ef9d792SMatthew G. Knepley Vec pointVec; 27944ef9d792SMatthew G. Knepley PetscScalar *pV; 279512111d7cSToby Isaac PetscSF coarseCellSF = NULL; 27963a93e3b7SToby Isaac const PetscSFNode *coarseCells; 2797d0f6233fSMatthew G. Knepley PetscInt numCoarseCells, cpdim, row = findices[i+off], q, c, j; 27984ef9d792SMatthew G. Knepley 27994ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 28009566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Q, i, &f)); 28019566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights)); 280263a3b9bcSJacob Faibussowitsch PetscCheck(qNc == Nc,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc); 28039566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec)); 28049566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 28059566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 28064ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2807c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2808c330f8ffSToby Isaac 28094ef9d792SMatthew G. Knepley /* Transform point to real space */ 2810c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 28114ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 28124ef9d792SMatthew G. Knepley } 28139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 28144ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 28151555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 28169566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 28174ef9d792SMatthew G. Knepley /* Update preallocation info */ 28189566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 28195f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 28209566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 28214ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2822826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 2823c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2824826eb36dSMatthew G. Knepley 28259566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 2826a0806964SMatthew G. Knepley if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE) obj, &cpdim)); 2827a0806964SMatthew G. Knepley else cpdim = 1; 2828a0806964SMatthew G. Knepley 2829a0806964SMatthew G. Knepley if (s) { 28304ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 28319566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 2832e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 2833c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 28344ef9d792SMatthew G. Knepley 28354ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 28364ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 2837a0806964SMatthew G. Knepley PetscCall(PetscFEComputeTabulation((PetscFE) obj, 1, x, 0, T)); 28389566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 28394ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 28404ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2841ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j*Nc + c]*qweights[ccell*qNc + c]; 28424ef9d792SMatthew G. Knepley } 28434ef9d792SMatthew G. Knepley } else { 28444ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 28459c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*qweights[ccell*qNc + c]; 28464ef9d792SMatthew G. Knepley } 28474ef9d792SMatthew G. Knepley } 28489566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 2849a0806964SMatthew G. Knepley } 2850a0806964SMatthew G. Knepley /* Update interpolator */ 2851d0f6233fSMatthew G. Knepley PetscCheck(numCIndices == totDim,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim); 2852a0806964SMatthew G. Knepley PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES)); 28539566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 28544ef9d792SMatthew G. Knepley } 28559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 28569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 28579566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 28584ef9d792SMatthew G. Knepley } 28599566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 28604ef9d792SMatthew G. Knepley } 2861a0806964SMatthew G. Knepley if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 2862a0806964SMatthew G. Knepley } 2863a0806964SMatthew G. Knepley if (!s) { 2864a0806964SMatthew G. Knepley PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY)); 2865a0806964SMatthew G. Knepley PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY)); 2866a0806964SMatthew G. Knepley PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In)); 2867a0806964SMatthew G. Knepley PetscCall(MatDestroy(&interp)); 2868a0806964SMatthew G. Knepley interp = In; 2869a0806964SMatthew G. Knepley } 28704ef9d792SMatthew G. Knepley } 28719566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 28729566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 28739566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 28749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 28759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 28769566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0)); 28774ef9d792SMatthew G. Knepley PetscFunctionReturn(0); 28784ef9d792SMatthew G. Knepley } 28794ef9d792SMatthew G. Knepley 288046fa42a0SMatthew G. Knepley /*@ 2881bd041c0cSMatthew G. Knepley DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse DM to a non-nested fine DM. 2882bd041c0cSMatthew G. Knepley 2883bd041c0cSMatthew G. Knepley Input Parameters: 2884bd041c0cSMatthew G. Knepley + dmf - The fine mesh 2885bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 2886bd041c0cSMatthew G. Knepley - user - The user context 2887bd041c0cSMatthew G. Knepley 2888bd041c0cSMatthew G. Knepley Output Parameter: 2889bd041c0cSMatthew G. Knepley . mass - The mass matrix 2890bd041c0cSMatthew G. Knepley 2891bd041c0cSMatthew G. Knepley Level: developer 2892bd041c0cSMatthew G. Knepley 2893db781477SPatrick Sanan .seealso: `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 2894bd041c0cSMatthew G. Knepley @*/ 2895bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 2896bd041c0cSMatthew G. Knepley { 2897bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 2898bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 2899bd041c0cSMatthew G. Knepley PetscDS prob; 2900bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2901e8f14785SLisandro Dalcin PetscHSetIJ ht; 2902bd041c0cSMatthew G. Knepley PetscLayout rLayout; 2903bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 2904bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 2905bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 2906bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 2907bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 2908bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 2909bd041c0cSMatthew G. Knepley 2910bd041c0cSMatthew G. Knepley PetscFunctionBegin; 29119566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 29129566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 29139566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 29149566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 29159566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ)); 29169566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc)); 29179566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 29189566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 29199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 29209566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 29219566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd)); 29229566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 29239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 2924bd041c0cSMatthew G. Knepley 29259566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mass, &locRows, NULL)); 29269566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject) mass), &rLayout)); 29279566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(rLayout, locRows)); 29289566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(rLayout, 1)); 29299566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rLayout)); 29309566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd)); 29319566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rLayout)); 29329566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(locRows,&dnz,locRows,&onz)); 29339566063dSJacob Faibussowitsch PetscCall(PetscHSetIJCreate(&ht)); 2934bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2935bd041c0cSMatthew G. Knepley PetscObject obj; 2936bd041c0cSMatthew G. Knepley PetscClassId id; 2937bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2938bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 2939bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2940bd041c0cSMatthew G. Knepley 29419566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 29429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 29439566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE) obj, &quad)); 29449566063dSJacob Faibussowitsch else PetscCall(PetscFVGetQuadrature((PetscFV) obj, &quad)); 29459566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL)); 2946bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2947bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2948bd041c0cSMatthew G. Knepley Vec pointVec; 2949bd041c0cSMatthew G. Knepley PetscScalar *pV; 2950bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2951bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2952bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 2953bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 2954bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 2955bd041c0cSMatthew G. Knepley 29569566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 29579566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 2958bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 29599566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec)); 29609566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 29619566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 2962bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 2963c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2964c330f8ffSToby Isaac 2965bd041c0cSMatthew G. Knepley /* Transform point to real space */ 2966c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 2967bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 2968bd041c0cSMatthew G. Knepley } 29699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 2970bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 29719566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 29729566063dSJacob Faibussowitsch PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view")); 2973bd041c0cSMatthew G. Knepley /* Update preallocation info */ 29749566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 29755f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 2976bd041c0cSMatthew G. Knepley { 2977e8f14785SLisandro Dalcin PetscHashIJKey key; 2978e8f14785SLisandro Dalcin PetscBool missing; 2979bd041c0cSMatthew G. Knepley 2980bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2981e8f14785SLisandro Dalcin key.i = findices[i]; 2982e8f14785SLisandro Dalcin if (key.i >= 0) { 2983bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 2984bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 29859566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 2986bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 2987e8f14785SLisandro Dalcin key.j = cindices[c]; 2988e8f14785SLisandro Dalcin if (key.j < 0) continue; 29899566063dSJacob Faibussowitsch PetscCall(PetscHSetIJQueryAdd(ht, key, &missing)); 2990bd041c0cSMatthew G. Knepley if (missing) { 2991e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i-rStart]; 2992e8f14785SLisandro Dalcin else ++onz[key.i-rStart]; 2993bd041c0cSMatthew G. Knepley } 2994bd041c0cSMatthew G. Knepley } 29959566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 2996bd041c0cSMatthew G. Knepley } 2997bd041c0cSMatthew G. Knepley } 2998bd041c0cSMatthew G. Knepley } 2999bd041c0cSMatthew G. Knepley } 30009566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 30019566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 30029566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3003bd041c0cSMatthew G. Knepley } 3004bd041c0cSMatthew G. Knepley } 30059566063dSJacob Faibussowitsch PetscCall(PetscHSetIJDestroy(&ht)); 30069566063dSJacob Faibussowitsch PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL)); 30079566063dSJacob Faibussowitsch PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE)); 30089566063dSJacob Faibussowitsch PetscCall(PetscFree2(dnz,onz)); 3009bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3010bd041c0cSMatthew G. Knepley PetscObject obj; 3011bd041c0cSMatthew G. Knepley PetscClassId id; 3012ef0bb6c7SMatthew G. Knepley PetscTabulation T, Tfine; 3013bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3014bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 3015bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3016bd041c0cSMatthew G. Knepley 30179566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 30189566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 3019ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 30209566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature((PetscFE) obj, &quad)); 30219566063dSJacob Faibussowitsch PetscCall(PetscFEGetCellTabulation((PetscFE) obj, 1, &Tfine)); 30229566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation((PetscFE) obj, 1, 1, x, 0, &T)); 3023ef0bb6c7SMatthew G. Knepley } else { 30249566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature((PetscFV) obj, &quad)); 3025ef0bb6c7SMatthew G. Knepley } 30269566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights)); 3027bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3028bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3029bd041c0cSMatthew G. Knepley Vec pointVec; 3030bd041c0cSMatthew G. Knepley PetscScalar *pV; 3031bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3032bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3033bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 3034bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3035bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3036bd041c0cSMatthew G. Knepley 30379566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 30389566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3039bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 30409566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec)); 30419566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 30429566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3043bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3044c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3045c330f8ffSToby Isaac 3046bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3047c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 3048bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 3049bd041c0cSMatthew G. Knepley } 30509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3051bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 30529566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 3053bd041c0cSMatthew G. Knepley /* Update matrix */ 30549566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 30555f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 30569566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3057bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3058bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 3059c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3060c330f8ffSToby Isaac 30619566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3062bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 30639566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3064bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 3065c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 3066bd041c0cSMatthew G. Knepley 3067bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 3068bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 3069bd041c0cSMatthew G. Knepley 3070bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 30719566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 30729566063dSJacob Faibussowitsch PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T)); 3073bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 3074bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 30759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3076bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3077ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j*Nc + c]*Tfine->T[0][(ccell*numFIndices + i)*Nc + c]*qweights[ccell*Nc + c]*detJ; 3078bd041c0cSMatthew G. Knepley } 3079bd041c0cSMatthew G. Knepley /* Update interpolator */ 30809566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 308163a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 30829566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3083bd041c0cSMatthew G. Knepley } 3084bd041c0cSMatthew G. Knepley } else { 3085bd041c0cSMatthew G. Knepley cpdim = 1; 3086bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 30879566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3088bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3089bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*1.0*qweights[ccell*Nc + c]*detJ; 3090bd041c0cSMatthew G. Knepley } 3091bd041c0cSMatthew G. Knepley /* Update interpolator */ 30929566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 309363a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices)); 309463a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 30959566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3096bd041c0cSMatthew G. Knepley } 3097bd041c0cSMatthew G. Knepley } 30989566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3099bd041c0cSMatthew G. Knepley } 31009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 31019566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 31029566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 31039566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3104bd041c0cSMatthew G. Knepley } 31059566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3106bd041c0cSMatthew G. Knepley } 31079566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0,J,invJ)); 31089566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c,Jc,invJc)); 31099566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 31109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY)); 31119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY)); 3112bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 3113bd041c0cSMatthew G. Knepley } 3114bd041c0cSMatthew G. Knepley 3115bd041c0cSMatthew G. Knepley /*@ 311646fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 311746fa42a0SMatthew G. Knepley 311846fa42a0SMatthew G. Knepley Input Parameters: 311946fa42a0SMatthew G. Knepley + dmc - The coarse mesh 312046fa42a0SMatthew G. Knepley - dmf - The fine mesh 312146fa42a0SMatthew G. Knepley - user - The user context 312246fa42a0SMatthew G. Knepley 312346fa42a0SMatthew G. Knepley Output Parameter: 312446fa42a0SMatthew G. Knepley . sc - The mapping 312546fa42a0SMatthew G. Knepley 312646fa42a0SMatthew G. Knepley Level: developer 312746fa42a0SMatthew G. Knepley 3128db781477SPatrick Sanan .seealso: `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 312946fa42a0SMatthew G. Knepley @*/ 31307c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 31317c927364SMatthew G. Knepley { 3132e9d4ef1bSMatthew G. Knepley PetscDS prob; 31337c927364SMatthew G. Knepley PetscFE *feRef; 313497c42addSMatthew G. Knepley PetscFV *fvRef; 31357c927364SMatthew G. Knepley Vec fv, cv; 31367c927364SMatthew G. Knepley IS fis, cis; 31377c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 31387c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 3139485ad865SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m; 31406f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 31417c927364SMatthew G. Knepley 31427c927364SMatthew G. Knepley PetscFunctionBegin; 31439566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0)); 31449566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 31459566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 31469566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 31479566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 31489566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 31499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 31509566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 31519566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 31529566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nf,&feRef,Nf,&fvRef,Nf,&needAvg)); 31537c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 315497c42addSMatthew G. Knepley PetscObject obj; 315597c42addSMatthew G. Knepley PetscClassId id; 3156aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 31577c927364SMatthew G. Knepley 31589566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 31599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 316097c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 316197c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 31626f3d3cbcSMatthew G. Knepley PetscSpace sp; 31639b2fc754SMatthew G. Knepley PetscInt maxDegree; 316497c42addSMatthew G. Knepley 31659566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 31669566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &fNb)); 31679566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 31689566063dSJacob Faibussowitsch PetscCall(PetscFEGetBasisSpace(fe, &sp)); 31699566063dSJacob Faibussowitsch PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree)); 31709b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 317197c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 317297c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 317397c42addSMatthew G. Knepley PetscDualSpace Q; 317497c42addSMatthew G. Knepley 31759566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 31769566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 31779566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fNb)); 31789566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 31796f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 318097c42addSMatthew G. Knepley } 3181d172c84bSMatthew G. Knepley fTotDim += fNb; 31827c927364SMatthew G. Knepley } 31839566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &cTotDim)); 31849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cTotDim,&cmap)); 31857c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 31867c927364SMatthew G. Knepley PetscFE feC; 318797c42addSMatthew G. Knepley PetscFV fvC; 31887c927364SMatthew G. Knepley PetscDualSpace QF, QC; 3189d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 31907c927364SMatthew G. Knepley 319197c42addSMatthew G. Knepley if (feRef[field]) { 31929566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *) &feC)); 31939566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feC, &NcC)); 31949566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[field], &NcF)); 31959566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[field], &QF)); 31969566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetOrder(QF, &order)); 31979566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 31989566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feC, &QC)); 31999566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 320097c42addSMatthew G. Knepley } else { 32019566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC)); 32029566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvC, &NcC)); 32039566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF)); 32049566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[field], &QF)); 32059566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 32069566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvC, &QC)); 32079566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 320897c42addSMatthew G. Knepley } 320963a3b9bcSJacob Faibussowitsch PetscCheck(NcF == NcC,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC); 32107c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 32117c927364SMatthew G. Knepley PetscQuadrature cfunc; 3212d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 3213d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 321497c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 32157c927364SMatthew G. Knepley 32169566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc)); 32179566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights)); 321863a3b9bcSJacob Faibussowitsch PetscCheck(NqcC == NcC,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC); 32191dca8a05SBarry Smith PetscCheck(NpC == 1 || !feRef[field],PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 32207c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 32217c927364SMatthew G. Knepley PetscQuadrature ffunc; 3222d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 32237c927364SMatthew G. Knepley PetscReal sum = 0.0; 3224d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 32257c927364SMatthew G. Knepley 32269566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc)); 32279566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights)); 322863a3b9bcSJacob Faibussowitsch PetscCheck(NqcF == NcF,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF); 32297c927364SMatthew G. Knepley if (NpC != NpF) continue; 32307c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 32317c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 3232d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d]*fqweights[d]); 3233d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 3234d172c84bSMatthew G. Knepley cmap[offsetC+c] = offsetF+f; 323597c42addSMatthew G. Knepley found = PETSC_TRUE; 32367c927364SMatthew G. Knepley break; 32377c927364SMatthew G. Knepley } 323897c42addSMatthew G. Knepley if (!found) { 323997c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 3240d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 3241d172c84bSMatthew G. Knepley cmap[offsetC+c] = offsetF+0; 324297c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 324397c42addSMatthew G. Knepley } 32447c927364SMatthew G. Knepley } 3245d172c84bSMatthew G. Knepley offsetC += cpdim; 3246d172c84bSMatthew G. Knepley offsetF += fpdim; 32477c927364SMatthew G. Knepley } 32489566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) {PetscCall(PetscFEDestroy(&feRef[f]));PetscCall(PetscFVDestroy(&fvRef[f]));} 32499566063dSJacob Faibussowitsch PetscCall(PetscFree3(feRef,fvRef,needAvg)); 32507c927364SMatthew G. Knepley 32519566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmf, &fv)); 32529566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmc, &cv)); 32539566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(cv, &startC, &endC)); 32549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m)); 32559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices)); 32569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&cindices)); 32579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&findices)); 32587c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 32597c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 32609566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices)); 32617c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 32620bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 326363a3b9bcSJacob Faibussowitsch PetscCheck(!(findices[cellCIndices[d]-startC] >= 0) || !(findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]]),PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 32647c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 32657c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 32667c927364SMatthew G. Knepley } 32677c927364SMatthew G. Knepley } 32689566063dSJacob Faibussowitsch PetscCall(PetscFree(cmap)); 32699566063dSJacob Faibussowitsch PetscCall(PetscFree2(cellCIndices,cellFIndices)); 32707c927364SMatthew G. Knepley 32719566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis)); 32729566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis)); 32739566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(cv, cis, fv, fis, sc)); 32749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cis)); 32759566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fis)); 32769566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmf, &fv)); 32779566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmc, &cv)); 32789566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0)); 3279cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 3280cb1e1211SMatthew G Knepley } 3281a1cf66bbSMatthew G. Knepley 32822f856554SMatthew G. Knepley /*@C 32832f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 32842f856554SMatthew G. Knepley 32852f856554SMatthew G. Knepley Input Parameters: 32862f856554SMatthew G. Knepley + dm - The DM 32872f856554SMatthew G. Knepley . cellIS - The cells to include 32882f856554SMatthew G. Knepley . locX - A local vector with the solution fields 32892f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 32902f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 32912f856554SMatthew G. Knepley 32922f856554SMatthew G. Knepley Output Parameters: 32932f856554SMatthew G. Knepley + u - The field coefficients 32942f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 32952f856554SMatthew G. Knepley - a - The auxiliary field coefficients 32962f856554SMatthew G. Knepley 32972f856554SMatthew G. Knepley Level: developer 32982f856554SMatthew G. Knepley 3299db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()` 33002f856554SMatthew G. Knepley @*/ 33012f856554SMatthew G. Knepley PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 33022f856554SMatthew G. Knepley { 33032f856554SMatthew G. Knepley DM plex, plexA = NULL; 3304a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 33052f856554SMatthew G. Knepley PetscSection section, sectionAux; 33062f856554SMatthew G. Knepley PetscDS prob; 33072f856554SMatthew G. Knepley const PetscInt *cells; 33082f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 33092f856554SMatthew G. Knepley 33102f856554SMatthew G. Knepley PetscFunctionBegin; 33112f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3312064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 3313064a246eSJacob Faibussowitsch if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4);} 3314064a246eSJacob Faibussowitsch if (locA) {PetscValidHeaderSpecific(locA, VEC_CLASSID, 5);} 3315064a246eSJacob Faibussowitsch PetscValidPointer(u, 6); 3316064a246eSJacob Faibussowitsch PetscValidPointer(u_t, 7); 3317064a246eSJacob Faibussowitsch PetscValidPointer(a, 8); 33189566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 33199566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 33209566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 33219566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob)); 33229566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 33232f856554SMatthew G. Knepley if (locA) { 33242f856554SMatthew G. Knepley DM dmAux; 33252f856554SMatthew G. Knepley PetscDS probAux; 33262f856554SMatthew G. Knepley 33279566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 33289566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 33299566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 33309566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 33319566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 33329566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 33332f856554SMatthew G. Knepley } 33342f856554SMatthew G. Knepley numCells = cEnd - cStart; 33359566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u)); 33369566063dSJacob Faibussowitsch if (locX_t) PetscCall(DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u_t)); else {*u_t = NULL;} 33379566063dSJacob Faibussowitsch if (locA) PetscCall(DMGetWorkArray(dm, numCells*totDimAux, MPIU_SCALAR, a)); else {*a = NULL;} 33382f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 33392f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 33402f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 33412f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 33422f856554SMatthew G. Knepley PetscInt i; 33432f856554SMatthew G. Knepley 33449566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x)); 33452f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind*totDim+i] = x[i]; 33469566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x)); 33472f856554SMatthew G. Knepley if (locX_t) { 33489566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t)); 33492f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind*totDim+i] = x_t[i]; 33509566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t)); 33512f856554SMatthew G. Knepley } 33522f856554SMatthew G. Knepley if (locA) { 33532f856554SMatthew G. Knepley PetscInt subcell; 33549566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 33559566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 33562f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind*totDimAux+i] = x[i]; 33579566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 33582f856554SMatthew G. Knepley } 33592f856554SMatthew G. Knepley } 33609566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 33619566063dSJacob Faibussowitsch if (locA) PetscCall(DMDestroy(&plexA)); 33629566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 33632f856554SMatthew G. Knepley PetscFunctionReturn(0); 33642f856554SMatthew G. Knepley } 33652f856554SMatthew G. Knepley 33662f856554SMatthew G. Knepley /*@C 33672f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 33682f856554SMatthew G. Knepley 33692f856554SMatthew G. Knepley Input Parameters: 33702f856554SMatthew G. Knepley + dm - The DM 33712f856554SMatthew G. Knepley . cellIS - The cells to include 33722f856554SMatthew G. Knepley . locX - A local vector with the solution fields 33732f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 33742f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 33752f856554SMatthew G. Knepley 33762f856554SMatthew G. Knepley Output Parameters: 33772f856554SMatthew G. Knepley + u - The field coefficients 33782f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 33792f856554SMatthew G. Knepley - a - The auxiliary field coefficients 33802f856554SMatthew G. Knepley 33812f856554SMatthew G. Knepley Level: developer 33822f856554SMatthew G. Knepley 3383db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()` 33842f856554SMatthew G. Knepley @*/ 33852f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 33862f856554SMatthew G. Knepley { 33872f856554SMatthew G. Knepley PetscFunctionBegin; 33889566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u)); 33899566063dSJacob Faibussowitsch if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t)); 33909566063dSJacob Faibussowitsch if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a)); 33912f856554SMatthew G. Knepley PetscFunctionReturn(0); 33922f856554SMatthew G. Knepley } 33932f856554SMatthew G. Knepley 3394faff4f7fSMatthew G. Knepley /* 3395faff4f7fSMatthew G. Knepley Get the auxiliary field vectors for the negative side (s = 0) and positive side (s = 1) of the interfaace 3396faff4f7fSMatthew G. Knepley */ 3397148442b3SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridAuxFields(DM dm, DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[]) 33986528b96dSMatthew G. Knepley { 339904c51a94SMatthew G. Knepley DM plexA[2]; 3400148442b3SMatthew G. Knepley DMEnclosureType encAux[2]; 340104c51a94SMatthew G. Knepley PetscSection sectionAux[2]; 34026528b96dSMatthew G. Knepley const PetscInt *cells; 3403148442b3SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, s, totDimAux[2]; 34046528b96dSMatthew G. Knepley 34056528b96dSMatthew G. Knepley PetscFunctionBegin; 3406148442b3SMatthew G. Knepley PetscValidPointer(locA, 5); 340704c51a94SMatthew G. Knepley if (!locA[0] || !locA[1]) PetscFunctionReturn(0); 3408148442b3SMatthew G. Knepley PetscValidPointer(dmAux, 2); 3409148442b3SMatthew G. Knepley PetscValidPointer(dsAux, 3); 3410148442b3SMatthew G. Knepley PetscValidPointer(a, 6); 34119566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 34126528b96dSMatthew G. Knepley numCells = cEnd - cStart; 3413148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 3414148442b3SMatthew G. Knepley PetscValidHeaderSpecific(dmAux[s], DM_CLASSID, 2); 3415148442b3SMatthew G. Knepley PetscValidHeaderSpecific(dsAux[s], PETSCDS_CLASSID, 3); 3416148442b3SMatthew G. Knepley PetscValidHeaderSpecific(locA[s], VEC_CLASSID, 5); 34179566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux[s], &plexA[s], PETSC_FALSE)); 34189566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux[s], dm, &encAux[s])); 34199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux[s], §ionAux[s])); 34209566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[s], &totDimAux[s])); 34219566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmAux[s], numCells*totDimAux[s], MPIU_SCALAR, &a[s])); 342204c51a94SMatthew G. Knepley } 3423148442b3SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 34246528b96dSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 34256528b96dSMatthew G. Knepley const PetscInt cind = c - cStart; 34266528b96dSMatthew G. Knepley const PetscInt *cone, *ornt; 34276528b96dSMatthew G. Knepley 34289566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 34299566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 3430148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 34315fedec97SMatthew G. Knepley const PetscInt *support; 3432148442b3SMatthew G. Knepley PetscScalar *x = NULL, *al = a[s]; 3433148442b3SMatthew G. Knepley const PetscInt tdA = totDimAux[s]; 34345fedec97SMatthew G. Knepley PetscInt ssize, scell; 3435148442b3SMatthew G. Knepley PetscInt subface, Na, i; 34366528b96dSMatthew G. Knepley 34379566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[s], &support)); 34389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[s], &ssize)); 343963a3b9bcSJacob Faibussowitsch PetscCheck(ssize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[s], cell, ssize); 34405fedec97SMatthew G. Knepley if (support[0] == cell) scell = support[1]; 34415fedec97SMatthew G. Knepley else if (support[1] == cell) scell = support[0]; 344263a3b9bcSJacob Faibussowitsch else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[s], cell); 34435fedec97SMatthew G. Knepley 34449566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA[s], dm, encAux[s], scell, &subface)); 34459566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x)); 34466528b96dSMatthew G. Knepley for (i = 0; i < Na; ++i) al[cind*tdA+i] = x[i]; 34479566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x)); 34486528b96dSMatthew G. Knepley } 34496528b96dSMatthew G. Knepley } 34509566063dSJacob Faibussowitsch for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexA[s])); 34519566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 34526528b96dSMatthew G. Knepley PetscFunctionReturn(0); 34536528b96dSMatthew G. Knepley } 34546528b96dSMatthew G. Knepley 345504c51a94SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridAuxFields(DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[]) 34566528b96dSMatthew G. Knepley { 34576528b96dSMatthew G. Knepley PetscFunctionBegin; 345804c51a94SMatthew G. Knepley if (!locA[0] || !locA[1]) PetscFunctionReturn(0); 34599566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmAux[0], 0, MPIU_SCALAR, &a[0])); 34609566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmAux[1], 0, MPIU_SCALAR, &a[1])); 34616528b96dSMatthew G. Knepley PetscFunctionReturn(0); 34626528b96dSMatthew G. Knepley } 34636528b96dSMatthew G. Knepley 34642f856554SMatthew G. Knepley /*@C 34652f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 34662f856554SMatthew G. Knepley 34672f856554SMatthew G. Knepley Input Parameters: 34682f856554SMatthew G. Knepley + dm - The DM 34692f856554SMatthew G. Knepley . fStart - The first face to include 34702f856554SMatthew G. Knepley . fEnd - The first face to exclude 34712f856554SMatthew G. Knepley . locX - A local vector with the solution fields 34722f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 34732f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 34742f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 34752f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 34762f856554SMatthew G. Knepley 34772f856554SMatthew G. Knepley Output Parameters: 34782f856554SMatthew G. Knepley + Nface - The number of faces with field values 34792f856554SMatthew G. Knepley . uL - The field values at the left side of the face 34802f856554SMatthew G. Knepley - uR - The field values at the right side of the face 34812f856554SMatthew G. Knepley 34822f856554SMatthew G. Knepley Level: developer 34832f856554SMatthew G. Knepley 3484db781477SPatrick Sanan .seealso: `DMPlexGetCellFields()` 34852f856554SMatthew G. Knepley @*/ 34862f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 34872f856554SMatthew G. Knepley { 34882f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 34892f856554SMatthew G. Knepley PetscSection section; 34902f856554SMatthew G. Knepley PetscDS prob; 34912f856554SMatthew G. Knepley DMLabel ghostLabel; 34922f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 34932f856554SMatthew G. Knepley PetscBool *isFE; 34942f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 34952f856554SMatthew G. Knepley 34962f856554SMatthew G. Knepley PetscFunctionBegin; 34972f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 34982f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 34992f856554SMatthew G. Knepley if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);} 35002f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 35012f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 35022f856554SMatthew G. Knepley if (locGrad) {PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);} 3503064a246eSJacob Faibussowitsch PetscValidPointer(uL, 10); 3504064a246eSJacob Faibussowitsch PetscValidPointer(uR, 11); 35059566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 35069566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 35079566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 35089566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 35099566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(prob, &Nc)); 35109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &isFE)); 35112f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 35122f856554SMatthew G. Knepley PetscObject obj; 35132f856554SMatthew G. Knepley PetscClassId id; 35142f856554SMatthew G. Knepley 35159566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 35169566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 35172f856554SMatthew G. Knepley if (id == PETSCFE_CLASSID) {isFE[f] = PETSC_TRUE;} 35182f856554SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {isFE[f] = PETSC_FALSE;} 35192f856554SMatthew G. Knepley else {isFE[f] = PETSC_FALSE;} 35202f856554SMatthew G. Knepley } 35219566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 35229566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locX, &x)); 35239566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 35249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 35259566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 35269566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 35272f856554SMatthew G. Knepley if (locGrad) { 35289566063dSJacob Faibussowitsch PetscCall(VecGetDM(locGrad, &dmGrad)); 35299566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 35302f856554SMatthew G. Knepley } 35319566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uL)); 35329566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uR)); 35332f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 35342f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 35352f856554SMatthew G. Knepley const PetscInt *cells; 35362f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 35372f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 35382f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 35392f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 35402f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 35412f856554SMatthew G. Knepley 35429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 35439566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 35449566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 35452f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 35469566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 35479566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 35489566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 35499566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 35502f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 35512f856554SMatthew G. Knepley PetscInt off; 35522f856554SMatthew G. Knepley 35539566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffset(prob, f, &off)); 35542f856554SMatthew G. Knepley if (isFE[f]) { 35552f856554SMatthew G. Knepley const PetscInt *cone; 35562f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 35572f856554SMatthew G. Knepley 35582f856554SMatthew G. Knepley xL = xR = NULL; 35599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 35609566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL)); 35619566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR)); 35629566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[0], &cone)); 35639566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL)); 35642f856554SMatthew G. Knepley for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) if (cone[faceLocL] == face) break; 35659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[1], &cone)); 35669566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR)); 35672f856554SMatthew G. Knepley for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) if (cone[faceLocR] == face) break; 35681dca8a05SBarry Smith PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]); 35692f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 35702f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 35712f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 35729566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface*Nc+off])); 35739566063dSJacob Faibussowitsch if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface*Nc+off])); 35742f856554SMatthew G. Knepley else {for (d = 0; d < comp; ++d) uRl[iface*Nc+off+d] = uLl[iface*Nc+off+d];} 35752f856554SMatthew G. Knepley } 35762f856554SMatthew G. Knepley else { 35779566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface*Nc+off])); 35789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 35792f856554SMatthew G. Knepley for (d = 0; d < comp; ++d) uLl[iface*Nc+off+d] = uRl[iface*Nc+off+d]; 35802f856554SMatthew G. Knepley } 35819566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL)); 35829566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR)); 35832f856554SMatthew G. Knepley } else { 35842f856554SMatthew G. Knepley PetscFV fv; 35852f856554SMatthew G. Knepley PetscInt numComp, c; 35862f856554SMatthew G. Knepley 35879566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *) &fv)); 35889566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &numComp)); 35899566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL)); 35909566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR)); 35912f856554SMatthew G. Knepley if (dmGrad) { 35922f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 35932f856554SMatthew G. Knepley 35949566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL)); 35959566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR)); 35962f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 35972f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 35982f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 35992f856554SMatthew G. Knepley uLl[iface*Nc+off+c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c*dim], dxL); 36002f856554SMatthew G. Knepley uRl[iface*Nc+off+c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c*dim], dxR); 36012f856554SMatthew G. Knepley } 36022f856554SMatthew G. Knepley } else { 36032f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 36042f856554SMatthew G. Knepley uLl[iface*Nc+off+c] = xL[c]; 36052f856554SMatthew G. Knepley uRl[iface*Nc+off+c] = xR[c]; 36062f856554SMatthew G. Knepley } 36072f856554SMatthew G. Knepley } 36082f856554SMatthew G. Knepley } 36092f856554SMatthew G. Knepley } 36102f856554SMatthew G. Knepley ++iface; 36112f856554SMatthew G. Knepley } 36122f856554SMatthew G. Knepley *Nface = iface; 36139566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locX, &x)); 36149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 36159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 36162f856554SMatthew G. Knepley if (locGrad) { 36179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 36182f856554SMatthew G. Knepley } 36199566063dSJacob Faibussowitsch PetscCall(PetscFree(isFE)); 36202f856554SMatthew G. Knepley PetscFunctionReturn(0); 36212f856554SMatthew G. Knepley } 36222f856554SMatthew G. Knepley 36232f856554SMatthew G. Knepley /*@C 36242f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 36252f856554SMatthew G. Knepley 36262f856554SMatthew G. Knepley Input Parameters: 36272f856554SMatthew G. Knepley + dm - The DM 36282f856554SMatthew G. Knepley . fStart - The first face to include 36292f856554SMatthew G. Knepley . fEnd - The first face to exclude 36302f856554SMatthew G. Knepley . locX - A local vector with the solution fields 36312f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 36322f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 36332f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 36342f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 36352f856554SMatthew G. Knepley 36362f856554SMatthew G. Knepley Output Parameters: 36372f856554SMatthew G. Knepley + Nface - The number of faces with field values 36382f856554SMatthew G. Knepley . uL - The field values at the left side of the face 36392f856554SMatthew G. Knepley - uR - The field values at the right side of the face 36402f856554SMatthew G. Knepley 36412f856554SMatthew G. Knepley Level: developer 36422f856554SMatthew G. Knepley 3643db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()` 36442f856554SMatthew G. Knepley @*/ 36452f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 36462f856554SMatthew G. Knepley { 36472f856554SMatthew G. Knepley PetscFunctionBegin; 36489566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL)); 36499566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR)); 36502f856554SMatthew G. Knepley PetscFunctionReturn(0); 36512f856554SMatthew G. Knepley } 36522f856554SMatthew G. Knepley 36532f856554SMatthew G. Knepley /*@C 36542f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 36552f856554SMatthew G. Knepley 36562f856554SMatthew G. Knepley Input Parameters: 36572f856554SMatthew G. Knepley + dm - The DM 36582f856554SMatthew G. Knepley . fStart - The first face to include 36592f856554SMatthew G. Knepley . fEnd - The first face to exclude 36602f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 36612f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 36622f856554SMatthew G. Knepley 36632f856554SMatthew G. Knepley Output Parameters: 36642f856554SMatthew G. Knepley + Nface - The number of faces with field values 36652f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 36662f856554SMatthew G. Knepley - vol - The cell volume 36672f856554SMatthew G. Knepley 36682f856554SMatthew G. Knepley Level: developer 36692f856554SMatthew G. Knepley 3670db781477SPatrick Sanan .seealso: `DMPlexGetCellFields()` 36712f856554SMatthew G. Knepley @*/ 36722f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 36732f856554SMatthew G. Knepley { 36742f856554SMatthew G. Knepley DM dmFace, dmCell; 36752f856554SMatthew G. Knepley DMLabel ghostLabel; 36762f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 36772f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 36782f856554SMatthew G. Knepley 36792f856554SMatthew G. Knepley PetscFunctionBegin; 36802f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36812f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 36822f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 3683064a246eSJacob Faibussowitsch PetscValidPointer(fgeom, 7); 3684064a246eSJacob Faibussowitsch PetscValidPointer(vol, 8); 36859566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 36869566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 36879566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 36889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 36899566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 36909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 36919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFaces, fgeom)); 36929566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces*2, MPIU_SCALAR, vol)); 36932f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 36942f856554SMatthew G. Knepley const PetscInt *cells; 36952f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 36962f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 36972f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 36982f856554SMatthew G. Knepley PetscReal *voll = *vol; 36992f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 37002f856554SMatthew G. Knepley 37019566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 37029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 37039566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 37042f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 37059566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 37069566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 37079566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 37089566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 37092f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 37102f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 37112f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 37122f856554SMatthew G. Knepley } 37132f856554SMatthew G. Knepley voll[iface*2+0] = cgL->volume; 37142f856554SMatthew G. Knepley voll[iface*2+1] = cgR->volume; 37152f856554SMatthew G. Knepley ++iface; 37162f856554SMatthew G. Knepley } 37172f856554SMatthew G. Knepley *Nface = iface; 37189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 37199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 37202f856554SMatthew G. Knepley PetscFunctionReturn(0); 37212f856554SMatthew G. Knepley } 37222f856554SMatthew G. Knepley 37232f856554SMatthew G. Knepley /*@C 37242f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 37252f856554SMatthew G. Knepley 37262f856554SMatthew G. Knepley Input Parameters: 37272f856554SMatthew G. Knepley + dm - The DM 37282f856554SMatthew G. Knepley . fStart - The first face to include 37292f856554SMatthew G. Knepley . fEnd - The first face to exclude 37302f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 37312f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 37322f856554SMatthew G. Knepley 37332f856554SMatthew G. Knepley Output Parameters: 37342f856554SMatthew G. Knepley + Nface - The number of faces with field values 37352f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 37362f856554SMatthew G. Knepley - vol - The cell volume 37372f856554SMatthew G. Knepley 37382f856554SMatthew G. Knepley Level: developer 37392f856554SMatthew G. Knepley 3740db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()` 37412f856554SMatthew G. Knepley @*/ 37422f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 37432f856554SMatthew G. Knepley { 37442f856554SMatthew G. Knepley PetscFunctionBegin; 37459566063dSJacob Faibussowitsch PetscCall(PetscFree(*fgeom)); 37469566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol)); 37472f856554SMatthew G. Knepley PetscFunctionReturn(0); 37482f856554SMatthew G. Knepley } 37492f856554SMatthew G. Knepley 3750a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3751a1cf66bbSMatthew G. Knepley { 3752a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 3753a1cf66bbSMatthew G. Knepley PetscObjectId id; 3754a1cf66bbSMatthew G. Knepley PetscContainer container; 3755a1cf66bbSMatthew G. Knepley 3756a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 37579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad,&id)); 375863a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id)); 37599566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container)); 3760a1cf66bbSMatthew G. Knepley if (container) { 37619566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **) geom)); 3762a1cf66bbSMatthew G. Knepley } else { 37639566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 37649566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF,&container)); 37659566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *) *geom)); 37669566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 37679566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container)); 37689566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 3769a1cf66bbSMatthew G. Knepley } 3770a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3771a1cf66bbSMatthew G. Knepley } 3772a1cf66bbSMatthew G. Knepley 3773a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3774a1cf66bbSMatthew G. Knepley { 3775a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3776a1cf66bbSMatthew G. Knepley *geom = NULL; 3777a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3778a1cf66bbSMatthew G. Knepley } 3779a1cf66bbSMatthew G. Knepley 378092d50984SMatthew G. Knepley PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 378192d50984SMatthew G. Knepley { 378292d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 378392d50984SMatthew G. Knepley const char *name = "Residual"; 378492d50984SMatthew G. Knepley DM dmAux = NULL; 378592d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 378692d50984SMatthew G. Knepley PetscDS prob = NULL; 378792d50984SMatthew G. Knepley PetscDS probAux = NULL; 378892d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 378992d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 379092d50984SMatthew G. Knepley DMField coordField = NULL; 3791c0006e53SPatrick Farrell Vec locA; 3792c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 379392d50984SMatthew G. Knepley IS chunkIS; 379492d50984SMatthew G. Knepley const PetscInt *cells; 379592d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 3796364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 379792d50984SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 379806ad1575SMatthew G. Knepley PetscFormKey key; 379992d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 380092d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 380192d50984SMatthew G. Knepley 380292d50984SMatthew G. Knepley PetscFunctionBegin; 38039566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM,dm,0,0,0)); 380492d50984SMatthew G. Knepley /* FEM+FVM */ 380592d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 38069566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 38079566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 38089566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 38099566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 38109566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 381192d50984SMatthew G. Knepley if (locA) { 38129566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 38139566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 38149566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 381592d50984SMatthew G. Knepley } 381692d50984SMatthew G. Knepley /* 2: Get geometric data */ 381792d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 381892d50984SMatthew G. Knepley PetscObject obj; 381992d50984SMatthew G. Knepley PetscClassId id; 382092d50984SMatthew G. Knepley PetscBool fimp; 382192d50984SMatthew G. Knepley 38229566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 382392d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 38249566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 38259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 382692d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) {useFEM = PETSC_TRUE;} 38275f80ce2aSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Use of FVM with PCPATCH not yet implemented"); 382892d50984SMatthew G. Knepley } 382992d50984SMatthew G. Knepley if (useFEM) { 38309566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 38319566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree)); 383292d50984SMatthew G. Knepley if (maxDegree <= 1) { 38339566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad)); 383492d50984SMatthew G. Knepley if (affineQuad) { 38359566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom)); 383692d50984SMatthew G. Knepley } 383792d50984SMatthew G. Knepley } else { 38389566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf,&quads,Nf,&geoms)); 383992d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 384092d50984SMatthew G. Knepley PetscObject obj; 384192d50984SMatthew G. Knepley PetscClassId id; 384292d50984SMatthew G. Knepley PetscBool fimp; 384392d50984SMatthew G. Knepley 38449566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 384592d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 38469566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 38479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 384892d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 384992d50984SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 385092d50984SMatthew G. Knepley 38519566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 38529566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 38539566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f])); 385492d50984SMatthew G. Knepley } 385592d50984SMatthew G. Knepley } 385692d50984SMatthew G. Knepley } 385792d50984SMatthew G. Knepley } 385892d50984SMatthew G. Knepley /* Loop over chunks */ 38599566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 38609566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 38619566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 386292d50984SMatthew G. Knepley numCells = cEnd - cStart; 386392d50984SMatthew G. Knepley numChunks = 1; 386492d50984SMatthew G. Knepley cellChunkSize = numCells/numChunks; 386592d50984SMatthew G. Knepley numChunks = PetscMin(1,numCells); 38666528b96dSMatthew G. Knepley key.label = NULL; 38676528b96dSMatthew G. Knepley key.value = 0; 386806ad1575SMatthew G. Knepley key.part = 0; 386992d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 3870c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 3871c0006e53SPatrick Farrell PetscReal *vol = NULL; 3872c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 387392d50984SMatthew G. Knepley PetscInt cS = cStart+chunk*cellChunkSize, cE = PetscMin(cS+cellChunkSize, cEnd), numCells = cE - cS, c; 3874c0006e53SPatrick Farrell PetscInt numFaces = 0; 387592d50984SMatthew G. Knepley 387692d50984SMatthew G. Knepley /* Extract field coefficients */ 387792d50984SMatthew G. Knepley if (useFEM) { 38789566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 38799566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 38809566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec)); 38819566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells*totDim)); 388292d50984SMatthew G. Knepley } 388392d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 388492d50984SMatthew G. Knepley /* Loop over fields */ 388592d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 388692d50984SMatthew G. Knepley PetscObject obj; 388792d50984SMatthew G. Knepley PetscClassId id; 388892d50984SMatthew G. Knepley PetscBool fimp; 388992d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 389092d50984SMatthew G. Knepley 38916528b96dSMatthew G. Knepley key.field = f; 38929566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 389392d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 38949566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 38959566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 389692d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 389792d50984SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 389892d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 389992d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 390092d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 390192d50984SMatthew G. Knepley PetscInt Nq, Nb; 390292d50984SMatthew G. Knepley 39039566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 39049566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 39059566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 390692d50984SMatthew G. Knepley blockSize = Nb; 390792d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 39089566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 390992d50984SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 391092d50984SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 391192d50984SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 391292d50984SMatthew G. Knepley offset = numCells - Nr; 391392d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 391492d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 39159566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom,0,offset,&chunkGeom)); 39169566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 39179566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom,offset,numCells,&chunkGeom)); 39189566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, &elemVec[offset*totDim])); 39199566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom,offset,numCells,&chunkGeom)); 392092d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 392192d50984SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 392292d50984SMatthew G. Knepley 392392d50984SMatthew G. Knepley Ne = numFaces; 392492d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 392592d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 39269566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 392763a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 392892d50984SMatthew G. Knepley } 392992d50984SMatthew G. Knepley /* Loop over domain */ 393092d50984SMatthew G. Knepley if (useFEM) { 393192d50984SMatthew G. Knepley /* Add elemVec to locX */ 393292d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 393392d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 393492d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 393592d50984SMatthew G. Knepley 39369566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind*totDim])); 393792d50984SMatthew G. Knepley if (ghostLabel) { 393892d50984SMatthew G. Knepley PetscInt ghostVal; 393992d50984SMatthew G. Knepley 39409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel,cell,&ghostVal)); 394192d50984SMatthew G. Knepley if (ghostVal > 0) continue; 394292d50984SMatthew G. Knepley } 39439566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind*totDim], ADD_ALL_VALUES)); 394492d50984SMatthew G. Knepley } 394592d50984SMatthew G. Knepley } 394692d50984SMatthew G. Knepley /* Handle time derivative */ 394792d50984SMatthew G. Knepley if (locX_t) { 394892d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 394992d50984SMatthew G. Knepley 39509566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 39519566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 395292d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 395392d50984SMatthew G. Knepley PetscFV fv; 395492d50984SMatthew G. Knepley PetscObject obj; 395592d50984SMatthew G. Knepley PetscClassId id; 395692d50984SMatthew G. Knepley PetscInt pdim, d; 395792d50984SMatthew G. Knepley 39589566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 39599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 396092d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 396192d50984SMatthew G. Knepley fv = (PetscFV) obj; 39629566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 396392d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 396492d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 396592d50984SMatthew G. Knepley PetscScalar *u_t, *r; 396692d50984SMatthew G. Knepley 396792d50984SMatthew G. Knepley if (ghostLabel) { 396892d50984SMatthew G. Knepley PetscInt ghostVal; 396992d50984SMatthew G. Knepley 39709566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 397192d50984SMatthew G. Knepley if (ghostVal > 0) continue; 397292d50984SMatthew G. Knepley } 39739566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 39749566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 397592d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 397692d50984SMatthew G. Knepley } 397792d50984SMatthew G. Knepley } 39789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 39799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 398092d50984SMatthew G. Knepley } 398192d50984SMatthew G. Knepley if (useFEM) { 39829566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 39839566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec)); 398492d50984SMatthew G. Knepley } 398592d50984SMatthew G. Knepley } 39869566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 39879566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 398892d50984SMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */ 398992d50984SMatthew G. Knepley if (useFEM) { 399092d50984SMatthew G. Knepley if (maxDegree <= 1) { 39919566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom)); 39929566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 399392d50984SMatthew G. Knepley } else { 399492d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 39959566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f])); 39969566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 399792d50984SMatthew G. Knepley } 39989566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads,geoms)); 399992d50984SMatthew G. Knepley } 400092d50984SMatthew G. Knepley } 40019566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM,dm,0,0,0)); 400292d50984SMatthew G. Knepley PetscFunctionReturn(0); 400392d50984SMatthew G. Knepley } 400492d50984SMatthew G. Knepley 4005a1cf66bbSMatthew G. Knepley /* 4006a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 4007a1cf66bbSMatthew G. Knepley 4008a1cf66bbSMatthew G. Knepley X - The local solution vector 4009a5b23f4aSJose E. Roman X_t - The local solution time derivative vector, or NULL 4010a1cf66bbSMatthew G. Knepley */ 4011a1cf66bbSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, 4012a1cf66bbSMatthew G. Knepley PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 4013a1cf66bbSMatthew G. Knepley { 4014a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 4015a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 4016a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 4017a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 4018a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 4019a1cf66bbSMatthew G. Knepley Vec A; 4020a1cf66bbSMatthew G. Knepley DMField coordField; 4021a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 4022a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 4023a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 4024a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 4025e432b41dSStefano Zampini PetscBool hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE; 4026a1cf66bbSMatthew G. Knepley const PetscInt *cells; 402706ad1575SMatthew G. Knepley PetscFormKey key; 40289b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 4029a1cf66bbSMatthew G. Knepley 4030a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 40319566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 40329566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 40339566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM,dm,0,0,0)); 40349566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 40359566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A)); 40369a2a23afSMatthew G. Knepley if (A) { 40379566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 40389566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 40399566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 4040a1cf66bbSMatthew G. Knepley } 4041a1cf66bbSMatthew G. Knepley /* Get flags */ 40429566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 40439566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 4044a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4045a1cf66bbSMatthew G. Knepley PetscObject disc; 4046a1cf66bbSMatthew G. Knepley PetscClassId id; 40479566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc)); 40489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 4049a1cf66bbSMatthew G. Knepley if (id == PETSCFE_CLASSID) {isFE[fieldI] = PETSC_TRUE;} 4050a1cf66bbSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {hasFV = PETSC_TRUE; isFE[fieldI] = PETSC_FALSE;} 4051a1cf66bbSMatthew G. Knepley } 40529566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 40539566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 40549566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 4055a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 4056a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 40579566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */ 40589566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 40599566063dSJacob Faibussowitsch if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 4060a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 4061a1cf66bbSMatthew G. Knepley if (isFE[0]) { 4062a1cf66bbSMatthew G. Knepley PetscFE fe; 4063a1cf66bbSMatthew G. Knepley PetscQuadrature q; 4064a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 4065a1cf66bbSMatthew G. Knepley 40669566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe)); 40679566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 40689566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL)); 40699566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 40709566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 4071a1cf66bbSMatthew G. Knepley blockSize = Nb*numQuadPoints; 4072a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 4073a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 4074a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 40759566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 4076a1cf66bbSMatthew G. Knepley } else { 4077a1cf66bbSMatthew G. Knepley chunkSize = numCells; 4078a1cf66bbSMatthew G. Knepley numChunks = 1; 4079a1cf66bbSMatthew G. Knepley } 4080a1cf66bbSMatthew G. Knepley /* Get work space */ 4081a1cf66bbSMatthew G. Knepley wsz = (((X?1:0) + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize; 40829566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work)); 40839566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(work, wsz)); 4084a1cf66bbSMatthew G. Knepley off = 0; 4085a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize*totDim, off += sz, work+off-sz) : NULL; 4086a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize*totDim, off += sz, work+off-sz) : NULL; 4087a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize*totDimAux, off += sz, work+off-sz) : NULL; 4088a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 4089a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 4090a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 409163a3b9bcSJacob Faibussowitsch PetscCheck(off == wsz,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz); 4092a1cf66bbSMatthew G. Knepley /* Setup geometry */ 40939566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 40949566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 40959566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 4096a1cf66bbSMatthew G. Knepley if (!qGeom) { 4097a1cf66bbSMatthew G. Knepley PetscFE fe; 4098a1cf66bbSMatthew G. Knepley 40999566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe)); 41009566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 41019566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) qGeom)); 4102a1cf66bbSMatthew G. Knepley } 41039566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 4104a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 41059566063dSJacob Faibussowitsch if (assembleJac) PetscCall(MatZeroEntries(J)); 41069566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(JP)); 41076528b96dSMatthew G. Knepley key.label = NULL; 41086528b96dSMatthew G. Knepley key.value = 0; 410906ad1575SMatthew G. Knepley key.part = 0; 4110a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 4111a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 4112a1cf66bbSMatthew G. Knepley PetscInt c; 4113a1cf66bbSMatthew G. Knepley 4114a1cf66bbSMatthew G. Knepley /* Extract values */ 4115a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4116a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c+offCell] : c+offCell; 4117a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 4118a1cf66bbSMatthew G. Knepley PetscInt i; 4119a1cf66bbSMatthew G. Knepley 4120a1cf66bbSMatthew G. Knepley if (X) { 41219566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 4122a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 41239566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 4124a1cf66bbSMatthew G. Knepley } 4125a1cf66bbSMatthew G. Knepley if (X_t) { 41269566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 4127a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c*totDim+i] = x_t[i]; 41289566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 4129a1cf66bbSMatthew G. Knepley } 4130a1cf66bbSMatthew G. Knepley if (dmAux) { 41319566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4132a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 41339566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4134a1cf66bbSMatthew G. Knepley } 4135a1cf66bbSMatthew G. Knepley } 4136a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4137a1cf66bbSMatthew G. Knepley PetscFE fe; 41389566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fe)); 4139a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 41406528b96dSMatthew G. Knepley key.field = fieldI*Nf + fieldJ; 41419566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat)); 41429566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP)); 41439566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD)); 4144a1cf66bbSMatthew G. Knepley } 4145a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 4146a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 4147a1cf66bbSMatthew G. Knepley PetscFV fv; 4148a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 4149a1cf66bbSMatthew G. Knepley 41509566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff)); 41519566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fv)); 41529566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 4153a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim*totDim) { 4154a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 4155a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 4156a1cf66bbSMatthew G. Knepley if (hasJac) {elemMat [eOffset+i*totDim+i] = 1.0;} 4157a1cf66bbSMatthew G. Knepley if (hasPrec) {elemMatP[eOffset+i*totDim+i] = 1.0;} 4158a1cf66bbSMatthew G. Knepley } 4159a1cf66bbSMatthew G. Knepley } 4160a1cf66bbSMatthew G. Knepley } 4161a1cf66bbSMatthew G. Knepley } 4162a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 4163a1cf66bbSMatthew G. Knepley if (hasDyn) {for (c = 0; c < chunkSize*totDim*totDim; ++c) elemMat[c] += X_tShift*elemMatD[c];} 4164a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 4165a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4166a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c+offCell] : c+offCell; 4167a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 41689566063dSJacob Faibussowitsch if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c-cStart)*totDim*totDim])); 41699566063dSJacob Faibussowitsch if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c-cStart)*totDim*totDim])); 4170a1cf66bbSMatthew G. Knepley } 41719566063dSJacob Faibussowitsch if (assembleJac) PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES)); 41729566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES)); 4173a1cf66bbSMatthew G. Knepley } 4174a1cf66bbSMatthew G. Knepley } 4175a1cf66bbSMatthew G. Knepley /* Cleanup */ 41769566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 41779566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 41789566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 41799566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 41809566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize, MPIU_SCALAR, &work)); 4181a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 41829566063dSJacob Faibussowitsch /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */ 4183a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 41849566063dSJacob Faibussowitsch if (assembleJac) {PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));} 41859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 41869566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM,dm,0,0,0)); 4187a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 4188a1cf66bbSMatthew G. Knepley } 41893e9753d6SMatthew G. Knepley 41903e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/ 41913e9753d6SMatthew G. Knepley 41923e9753d6SMatthew G. Knepley static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy) 41933e9753d6SMatthew G. Knepley { 41943e9753d6SMatthew G. Knepley PetscBool isPlex; 41953e9753d6SMatthew G. Knepley 41963e9753d6SMatthew G. Knepley PetscFunctionBegin; 41979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) dm, DMPLEX, &isPlex)); 41983e9753d6SMatthew G. Knepley if (isPlex) { 41993e9753d6SMatthew G. Knepley *plex = dm; 42009566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dm)); 42013e9753d6SMatthew G. Knepley } else { 42029566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) dm, "dm_plex", (PetscObject *) plex)); 42033e9753d6SMatthew G. Knepley if (!*plex) { 42049566063dSJacob Faibussowitsch PetscCall(DMConvert(dm,DMPLEX,plex)); 42059566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) dm, "dm_plex", (PetscObject) *plex)); 42061baa6e33SBarry Smith if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 42073e9753d6SMatthew G. Knepley } else { 42089566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) *plex)); 42093e9753d6SMatthew G. Knepley } 42103e9753d6SMatthew G. Knepley } 42113e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 42123e9753d6SMatthew G. Knepley } 42133e9753d6SMatthew G. Knepley 42143e9753d6SMatthew G. Knepley /*@ 42153e9753d6SMatthew G. Knepley DMPlexGetGeometryFVM - Return precomputed geometric data 42163e9753d6SMatthew G. Knepley 42173e9753d6SMatthew G. Knepley Collective on DM 42183e9753d6SMatthew G. Knepley 42193e9753d6SMatthew G. Knepley Input Parameter: 42203e9753d6SMatthew G. Knepley . dm - The DM 42213e9753d6SMatthew G. Knepley 42223e9753d6SMatthew G. Knepley Output Parameters: 42233e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry 42243e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry 42253e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell 42263e9753d6SMatthew G. Knepley 42273e9753d6SMatthew G. Knepley Level: developer 42283e9753d6SMatthew G. Knepley 4229db781477SPatrick Sanan .seealso: `DMTSSetRHSFunctionLocal()` 42303e9753d6SMatthew G. Knepley @*/ 42313e9753d6SMatthew G. Knepley PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius) 42323e9753d6SMatthew G. Knepley { 42333e9753d6SMatthew G. Knepley DM plex; 42343e9753d6SMatthew G. Knepley 42353e9753d6SMatthew G. Knepley PetscFunctionBegin; 42363e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 42379566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm,&plex,PETSC_TRUE)); 42389566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL)); 42399566063dSJacob Faibussowitsch if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius)); 42409566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 42413e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 42423e9753d6SMatthew G. Knepley } 42433e9753d6SMatthew G. Knepley 42443e9753d6SMatthew G. Knepley /*@ 42453e9753d6SMatthew G. Knepley DMPlexGetGradientDM - Return gradient data layout 42463e9753d6SMatthew G. Knepley 42473e9753d6SMatthew G. Knepley Collective on DM 42483e9753d6SMatthew G. Knepley 42493e9753d6SMatthew G. Knepley Input Parameters: 42503e9753d6SMatthew G. Knepley + dm - The DM 42513e9753d6SMatthew G. Knepley - fv - The PetscFV 42523e9753d6SMatthew G. Knepley 42533e9753d6SMatthew G. Knepley Output Parameter: 42543e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values 42553e9753d6SMatthew G. Knepley 42563e9753d6SMatthew G. Knepley Level: developer 42573e9753d6SMatthew G. Knepley 4258db781477SPatrick Sanan .seealso: `DMPlexGetGeometryFVM()` 42593e9753d6SMatthew G. Knepley @*/ 42603e9753d6SMatthew G. Knepley PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad) 42613e9753d6SMatthew G. Knepley { 42623e9753d6SMatthew G. Knepley DM plex; 42633e9753d6SMatthew G. Knepley PetscBool computeGradients; 42643e9753d6SMatthew G. Knepley 42653e9753d6SMatthew G. Knepley PetscFunctionBegin; 42663e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 42673e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(fv,PETSCFV_CLASSID,2); 42683e9753d6SMatthew G. Knepley PetscValidPointer(dmGrad,3); 42699566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &computeGradients)); 42703e9753d6SMatthew G. Knepley if (!computeGradients) {*dmGrad = NULL; PetscFunctionReturn(0);} 42719566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm,&plex,PETSC_TRUE)); 42729566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad)); 42739566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 42743e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 42753e9753d6SMatthew G. Knepley } 42763e9753d6SMatthew G. Knepley 42770c290148SMatthew G. Knepley static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS) 42783e9753d6SMatthew G. Knepley { 42793e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 42803e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL; 42813e9753d6SMatthew G. Knepley DMEnclosureType encAux; 42823e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 42833e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 42843e9753d6SMatthew G. Knepley Vec locA = NULL; 42853e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL; 42863e9753d6SMatthew G. Knepley PetscInt totDim, totDimAux = 0; 42873e9753d6SMatthew G. Knepley 42883e9753d6SMatthew G. Knepley PetscFunctionBegin; 42899566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 42909566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 42919566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 42929566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 42939566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 42943e9753d6SMatthew G. Knepley if (locA) { 42953e9753d6SMatthew G. Knepley DM dmAux; 42963e9753d6SMatthew G. Knepley 42979566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 42989566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 42999566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 43009566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 43019566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 43029566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 43033e9753d6SMatthew G. Knepley } 43040c290148SMatthew G. Knepley { 43053e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 43063e9753d6SMatthew G. Knepley PetscInt maxDegree; 43073e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 43083e9753d6SMatthew G. Knepley IS pointIS; 43093e9753d6SMatthew G. Knepley const PetscInt *points; 43103e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 43113e9753d6SMatthew G. Knepley 43129566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 43130c290148SMatthew G. Knepley if (!pointIS) goto end; /* No points with that id on this process */ 43143e9753d6SMatthew G. Knepley { 43153e9753d6SMatthew G. Knepley IS isectIS; 43163e9753d6SMatthew G. Knepley 43173e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 43189566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS,pointIS,&isectIS)); 43199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 43203e9753d6SMatthew G. Knepley pointIS = isectIS; 43213e9753d6SMatthew G. Knepley } 43229566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS,&numFaces)); 43239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS,&points)); 43249566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces*totDim, &u, locX_t ? numFaces*totDim : 0, &u_t, numFaces*totDim, &elemVec, locA ? numFaces*totDimAux : 0, &a)); 43259566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField,pointIS,NULL,&maxDegree)); 43263e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 43279566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField,pointIS,&qGeom)); 43283e9753d6SMatthew G. Knepley } 43293e9753d6SMatthew G. Knepley if (!qGeom) { 43303e9753d6SMatthew G. Knepley PetscFE fe; 43313e9753d6SMatthew G. Knepley 43329566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *) &fe)); 43339566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 43349566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 43353e9753d6SMatthew G. Knepley } 43369566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 43379566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField,pointIS,qGeom,PETSC_TRUE,&fgeom)); 43383e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 4339f15274beSMatthew Knepley const PetscInt point = points[face], *support; 43403e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 4341f15274beSMatthew Knepley PetscInt i; 43423e9753d6SMatthew G. Knepley 43439566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 43449566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 43453e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face*totDim+i] = x[i]; 43469566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 43473e9753d6SMatthew G. Knepley if (locX_t) { 43489566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 43493e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face*totDim+i] = x[i]; 43509566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 43513e9753d6SMatthew G. Knepley } 43523e9753d6SMatthew G. Knepley if (locA) { 43533e9753d6SMatthew G. Knepley PetscInt subp; 43543e9753d6SMatthew G. Knepley 43559566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 43569566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 43573e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face*totDimAux+i] = x[i]; 43589566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 43593e9753d6SMatthew G. Knepley } 43603e9753d6SMatthew G. Knepley } 43619566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numFaces*totDim)); 43623e9753d6SMatthew G. Knepley { 43633e9753d6SMatthew G. Knepley PetscFE fe; 43643e9753d6SMatthew G. Knepley PetscInt Nb; 43653e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 43663e9753d6SMatthew G. Knepley /* Conforming batches */ 43673e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 43683e9753d6SMatthew G. Knepley /* Remainder */ 43693e9753d6SMatthew G. Knepley PetscInt Nr, offset; 43703e9753d6SMatthew G. Knepley 43719566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *) &fe)); 43729566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 43739566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 43743e9753d6SMatthew G. Knepley /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */ 43753e9753d6SMatthew G. Knepley blockSize = Nb; 43763e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 43779566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 43783e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches*batchSize); 43793e9753d6SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 43803e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches*batchSize); 43813e9753d6SMatthew G. Knepley offset = numFaces - Nr; 43829566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom,0,offset,&chunkGeom)); 43839566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 43849566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 43859566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom,offset,numFaces,&chunkGeom)); 43869566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, a ? &a[offset*totDimAux] : NULL, t, &elemVec[offset*totDim])); 43879566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom,offset,numFaces,&chunkGeom)); 43883e9753d6SMatthew G. Knepley } 43893e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 43903e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 43913e9753d6SMatthew G. Knepley 43929566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, "BdResidual", totDim, &elemVec[face*totDim])); 43939566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 43949566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face*totDim], ADD_ALL_VALUES)); 43953e9753d6SMatthew G. Knepley } 43969566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,pointIS,qGeom,PETSC_TRUE,&fgeom)); 43979566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 43989566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 43999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 44009566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemVec, a)); 44013e9753d6SMatthew G. Knepley } 44020c290148SMatthew G. Knepley end: 44039566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 44049566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 44053e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 44063e9753d6SMatthew G. Knepley } 44073e9753d6SMatthew G. Knepley 44080c290148SMatthew G. Knepley PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF) 44093e9753d6SMatthew G. Knepley { 44103e9753d6SMatthew G. Knepley DMField coordField; 44113e9753d6SMatthew G. Knepley DMLabel depthLabel; 44123e9753d6SMatthew G. Knepley IS facetIS; 44133e9753d6SMatthew G. Knepley PetscInt dim; 44143e9753d6SMatthew G. Knepley 44153e9753d6SMatthew G. Knepley PetscFunctionBegin; 44169566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 44179566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 44189566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim-1, &facetIS)); 44199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 44209566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 44219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 44223e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 44233e9753d6SMatthew G. Knepley } 44243e9753d6SMatthew G. Knepley 44253e9753d6SMatthew G. Knepley PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 44263e9753d6SMatthew G. Knepley { 44273e9753d6SMatthew G. Knepley PetscDS prob; 44283e9753d6SMatthew G. Knepley PetscInt numBd, bd; 44293e9753d6SMatthew G. Knepley DMField coordField = NULL; 44303e9753d6SMatthew G. Knepley IS facetIS = NULL; 44313e9753d6SMatthew G. Knepley DMLabel depthLabel; 44323e9753d6SMatthew G. Knepley PetscInt dim; 44333e9753d6SMatthew G. Knepley 44343e9753d6SMatthew G. Knepley PetscFunctionBegin; 44359566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 44369566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 44379566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 44389566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel,dim - 1,&facetIS)); 44399566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 44403e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 444145480ffeSMatthew G. Knepley PetscWeakForm wf; 44423e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 44433e9753d6SMatthew G. Knepley DMLabel label; 44443e9753d6SMatthew G. Knepley const PetscInt *values; 44450c290148SMatthew G. Knepley PetscInt field, numValues, v; 44463e9753d6SMatthew G. Knepley PetscObject obj; 44473e9753d6SMatthew G. Knepley PetscClassId id; 44480c290148SMatthew G. Knepley PetscFormKey key; 44493e9753d6SMatthew G. Knepley 44509566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL)); 44519566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 44529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 44533e9753d6SMatthew G. Knepley if ((id != PETSCFE_CLASSID) || (type & DM_BC_ESSENTIAL)) continue; 44543e9753d6SMatthew G. Knepley if (!facetIS) { 44553e9753d6SMatthew G. Knepley DMLabel depthLabel; 44563e9753d6SMatthew G. Knepley PetscInt dim; 44573e9753d6SMatthew G. Knepley 44589566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 44599566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 44609566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 44613e9753d6SMatthew G. Knepley } 44629566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 44630c290148SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 44640c290148SMatthew G. Knepley key.label = label; 44650c290148SMatthew G. Knepley key.value = values[v]; 44660c290148SMatthew G. Knepley key.field = field; 44670c290148SMatthew G. Knepley key.part = 0; 44689566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 44690c290148SMatthew G. Knepley } 44703e9753d6SMatthew G. Knepley } 44719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 44723e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 44733e9753d6SMatthew G. Knepley } 44743e9753d6SMatthew G. Knepley 447506ad1575SMatthew G. Knepley PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 44763e9753d6SMatthew G. Knepley { 44773e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 44783e9753d6SMatthew G. Knepley const char *name = "Residual"; 44793e9753d6SMatthew G. Knepley DM dmAux = NULL; 44803e9753d6SMatthew G. Knepley DM dmGrad = NULL; 44813e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 44826528b96dSMatthew G. Knepley PetscDS ds = NULL; 44836528b96dSMatthew G. Knepley PetscDS dsAux = NULL; 44843e9753d6SMatthew G. Knepley PetscSection section = NULL; 44853e9753d6SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 44863e9753d6SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 44873e9753d6SMatthew G. Knepley PetscBool isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 44883e9753d6SMatthew G. Knepley PetscFV fvm = NULL; 44893e9753d6SMatthew G. Knepley PetscFVCellGeom *cgeomFVM = NULL; 44903e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeomFVM = NULL; 44913e9753d6SMatthew G. Knepley DMField coordField = NULL; 44923e9753d6SMatthew G. Knepley Vec locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, grad, locGrad = NULL; 44933e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a, *uL, *uR; 44943e9753d6SMatthew G. Knepley IS chunkIS; 44953e9753d6SMatthew G. Knepley const PetscInt *cells; 44963e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 44973e9753d6SMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd; 44983e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 44993e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 45003e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 45013e9753d6SMatthew G. Knepley 45023e9753d6SMatthew G. Knepley PetscFunctionBegin; 4503e04ae0b4SMatthew G. Knepley if (!cellIS) PetscFunctionReturn(0); 45049566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM,dm,0,0,0)); 45053e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 45063e9753d6SMatthew G. Knepley /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */ 45073e9753d6SMatthew G. Knepley /* FEM+FVM */ 45089566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 45099566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 45103e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 45119566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 45129566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 45139566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds)); 45149566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 45159566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 45169566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 45173e9753d6SMatthew G. Knepley if (locA) { 45183e9753d6SMatthew G. Knepley PetscInt subcell; 45199566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 45201059d808SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell)); 45219566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dmAux, subcell, &dsAux)); 45229566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 45233e9753d6SMatthew G. Knepley } 45243e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 45253e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 45263e9753d6SMatthew G. Knepley PetscObject obj; 45273e9753d6SMatthew G. Knepley PetscClassId id; 45283e9753d6SMatthew G. Knepley PetscBool fimp; 45293e9753d6SMatthew G. Knepley 45309566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 45313e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 45329566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 45339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 45343e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) {useFEM = PETSC_TRUE;} 45353e9753d6SMatthew G. Knepley if (id == PETSCFV_CLASSID) {useFVM = PETSC_TRUE; fvm = (PetscFV) obj;} 45363e9753d6SMatthew G. Knepley } 45373e9753d6SMatthew G. Knepley if (useFEM) { 45389566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 45399566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree)); 45403e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 45419566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad)); 45423e9753d6SMatthew G. Knepley if (affineQuad) { 45439566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom)); 45443e9753d6SMatthew G. Knepley } 45453e9753d6SMatthew G. Knepley } else { 45469566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf,&quads,Nf,&geoms)); 45473e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 45483e9753d6SMatthew G. Knepley PetscObject obj; 45493e9753d6SMatthew G. Knepley PetscClassId id; 45503e9753d6SMatthew G. Knepley PetscBool fimp; 45513e9753d6SMatthew G. Knepley 45529566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 45533e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 45549566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 45559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 45563e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 45573e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 45583e9753d6SMatthew G. Knepley 45599566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 45609566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 45619566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f])); 45623e9753d6SMatthew G. Knepley } 45633e9753d6SMatthew G. Knepley } 45643e9753d6SMatthew G. Knepley } 45653e9753d6SMatthew G. Knepley } 45663e9753d6SMatthew G. Knepley if (useFVM) { 45679566063dSJacob Faibussowitsch PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 45689566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM)); 45699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM)); 45703e9753d6SMatthew G. Knepley /* Reconstruct and limit cell gradients */ 45719566063dSJacob Faibussowitsch PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad)); 45723e9753d6SMatthew G. Knepley if (dmGrad) { 45739566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 45749566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 45759566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 45763e9753d6SMatthew G. Knepley /* Communicate gradient values */ 45779566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 45789566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 45799566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 45809566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 45813e9753d6SMatthew G. Knepley } 45823e9753d6SMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 45839566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad)); 45843e9753d6SMatthew G. Knepley } 45853e9753d6SMatthew G. Knepley /* Loop over chunks */ 45869566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 45873e9753d6SMatthew G. Knepley numCells = cEnd - cStart; 45883e9753d6SMatthew G. Knepley numChunks = 1; 45893e9753d6SMatthew G. Knepley cellChunkSize = numCells/numChunks; 45903e9753d6SMatthew G. Knepley faceChunkSize = (fEnd - fStart)/numChunks; 45913e9753d6SMatthew G. Knepley numChunks = PetscMin(1,numCells); 45923e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 45933e9753d6SMatthew G. Knepley PetscScalar *elemVec, *fluxL, *fluxR; 45943e9753d6SMatthew G. Knepley PetscReal *vol; 45953e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeom; 45963e9753d6SMatthew G. Knepley PetscInt cS = cStart+chunk*cellChunkSize, cE = PetscMin(cS+cellChunkSize, cEnd), numCells = cE - cS, c; 45973e9753d6SMatthew G. Knepley PetscInt fS = fStart+chunk*faceChunkSize, fE = PetscMin(fS+faceChunkSize, fEnd), numFaces = 0, face; 45983e9753d6SMatthew G. Knepley 45993e9753d6SMatthew G. Knepley /* Extract field coefficients */ 46003e9753d6SMatthew G. Knepley if (useFEM) { 46019566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 46029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 46039566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec)); 46049566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells*totDim)); 46053e9753d6SMatthew G. Knepley } 46063e9753d6SMatthew G. Knepley if (useFVM) { 46079566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 46089566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 46099566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces*totDim, MPIU_SCALAR, &fluxL)); 46109566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces*totDim, MPIU_SCALAR, &fluxR)); 46119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxL, numFaces*totDim)); 46129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxR, numFaces*totDim)); 46133e9753d6SMatthew G. Knepley } 46143e9753d6SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 46153e9753d6SMatthew G. Knepley /* Loop over fields */ 46163e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 46173e9753d6SMatthew G. Knepley PetscObject obj; 46183e9753d6SMatthew G. Knepley PetscClassId id; 46193e9753d6SMatthew G. Knepley PetscBool fimp; 46203e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 46213e9753d6SMatthew G. Knepley 46226528b96dSMatthew G. Knepley key.field = f; 46239566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 46243e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 46259566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 46269566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 46273e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 46283e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 46293e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 46303e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 46313e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 46323e9753d6SMatthew G. Knepley PetscInt Nq, Nb; 46333e9753d6SMatthew G. Knepley 46349566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 46359566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 46369566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 46373e9753d6SMatthew G. Knepley blockSize = Nb; 46383e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 46399566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 46403e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 46413e9753d6SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 46423e9753d6SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 46433e9753d6SMatthew G. Knepley offset = numCells - Nr; 46443e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 46453e9753d6SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 46469566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom,0,offset,&chunkGeom)); 46479566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec)); 46489566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom,offset,numCells,&chunkGeom)); 46499566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux, &a[offset*totDimAux], t, &elemVec[offset*totDim])); 46509566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom,offset,numCells,&chunkGeom)); 46513e9753d6SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 46523e9753d6SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 46533e9753d6SMatthew G. Knepley 46543e9753d6SMatthew G. Knepley Ne = numFaces; 46553e9753d6SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 46563e9753d6SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 46579566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 465863a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 46593e9753d6SMatthew G. Knepley } 46603e9753d6SMatthew G. Knepley /* Loop over domain */ 46613e9753d6SMatthew G. Knepley if (useFEM) { 46623e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 46633e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 46643e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 46653e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 46663e9753d6SMatthew G. Knepley 46679566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind*totDim])); 46683e9753d6SMatthew G. Knepley if (ghostLabel) { 46693e9753d6SMatthew G. Knepley PetscInt ghostVal; 46703e9753d6SMatthew G. Knepley 46719566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel,cell,&ghostVal)); 46723e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 46733e9753d6SMatthew G. Knepley } 46749566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind*totDim], ADD_ALL_VALUES)); 46753e9753d6SMatthew G. Knepley } 46763e9753d6SMatthew G. Knepley } 46773e9753d6SMatthew G. Knepley if (useFVM) { 46783e9753d6SMatthew G. Knepley PetscScalar *fa; 46793e9753d6SMatthew G. Knepley PetscInt iface; 46803e9753d6SMatthew G. Knepley 46819566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 46823e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 46833e9753d6SMatthew G. Knepley PetscFV fv; 46843e9753d6SMatthew G. Knepley PetscObject obj; 46853e9753d6SMatthew G. Knepley PetscClassId id; 46863e9753d6SMatthew G. Knepley PetscInt foff, pdim; 46873e9753d6SMatthew G. Knepley 46889566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 46899566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(ds, f, &foff)); 46909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 46913e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 46923e9753d6SMatthew G. Knepley fv = (PetscFV) obj; 46939566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 46943e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 46953e9753d6SMatthew G. Knepley for (face = fS, iface = 0; face < fE; ++face) { 46963e9753d6SMatthew G. Knepley const PetscInt *scells; 46973e9753d6SMatthew G. Knepley PetscScalar *fL = NULL, *fR = NULL; 46983e9753d6SMatthew G. Knepley PetscInt ghost, d, nsupp, nchild; 46993e9753d6SMatthew G. Knepley 47009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 47019566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 47029566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 47033e9753d6SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 47049566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &scells)); 47059566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel,scells[0],&ghost)); 47069566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL)); 47079566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel,scells[1],&ghost)); 47089566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR)); 47093e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) { 47103e9753d6SMatthew G. Knepley if (fL) fL[d] -= fluxL[iface*totDim+foff+d]; 47113e9753d6SMatthew G. Knepley if (fR) fR[d] += fluxR[iface*totDim+foff+d]; 47123e9753d6SMatthew G. Knepley } 47133e9753d6SMatthew G. Knepley ++iface; 47143e9753d6SMatthew G. Knepley } 47153e9753d6SMatthew G. Knepley } 47169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 47173e9753d6SMatthew G. Knepley } 47183e9753d6SMatthew G. Knepley /* Handle time derivative */ 47193e9753d6SMatthew G. Knepley if (locX_t) { 47203e9753d6SMatthew G. Knepley PetscScalar *x_t, *fa; 47213e9753d6SMatthew G. Knepley 47229566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 47239566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 47243e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 47253e9753d6SMatthew G. Knepley PetscFV fv; 47263e9753d6SMatthew G. Knepley PetscObject obj; 47273e9753d6SMatthew G. Knepley PetscClassId id; 47283e9753d6SMatthew G. Knepley PetscInt pdim, d; 47293e9753d6SMatthew G. Knepley 47309566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 47319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 47323e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 47333e9753d6SMatthew G. Knepley fv = (PetscFV) obj; 47349566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 47353e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 47363e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 47373e9753d6SMatthew G. Knepley PetscScalar *u_t, *r; 47383e9753d6SMatthew G. Knepley 47393e9753d6SMatthew G. Knepley if (ghostLabel) { 47403e9753d6SMatthew G. Knepley PetscInt ghostVal; 47413e9753d6SMatthew G. Knepley 47429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 47433e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 47443e9753d6SMatthew G. Knepley } 47459566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 47469566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 47473e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 47483e9753d6SMatthew G. Knepley } 47493e9753d6SMatthew G. Knepley } 47509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 47519566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 47523e9753d6SMatthew G. Knepley } 47533e9753d6SMatthew G. Knepley if (useFEM) { 47549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 47559566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec)); 47563e9753d6SMatthew G. Knepley } 47573e9753d6SMatthew G. Knepley if (useFVM) { 47589566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 47599566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 47609566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces*totDim, MPIU_SCALAR, &fluxL)); 47619566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces*totDim, MPIU_SCALAR, &fluxR)); 47629566063dSJacob Faibussowitsch if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 47633e9753d6SMatthew G. Knepley } 47643e9753d6SMatthew G. Knepley } 47659566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 47669566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 47673e9753d6SMatthew G. Knepley 47683e9753d6SMatthew G. Knepley if (useFEM) { 47699566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user)); 47703e9753d6SMatthew G. Knepley 47713e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 47729566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom)); 47739566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 47743e9753d6SMatthew G. Knepley } else { 47753e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 47769566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f])); 47779566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 47783e9753d6SMatthew G. Knepley } 47799566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads,geoms)); 47803e9753d6SMatthew G. Knepley } 47813e9753d6SMatthew G. Knepley } 47823e9753d6SMatthew G. Knepley 47833e9753d6SMatthew G. Knepley /* FEM */ 47843e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 47853e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 47863e9753d6SMatthew G. Knepley /* 3: Handle boundary values */ 47873e9753d6SMatthew G. Knepley /* 4: Loop over domain */ 47883e9753d6SMatthew G. Knepley /* Extract coefficients */ 47893e9753d6SMatthew G. Knepley /* Loop over fields */ 47903e9753d6SMatthew G. Knepley /* Set tiling for FE*/ 47913e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec */ 47923e9753d6SMatthew G. Knepley /* Loop over subdomain */ 47933e9753d6SMatthew G. Knepley /* Loop over quad points */ 47943e9753d6SMatthew G. Knepley /* Transform coords to real space */ 47953e9753d6SMatthew G. Knepley /* Evaluate field and aux fields at point */ 47963e9753d6SMatthew G. Knepley /* Evaluate residual at point */ 47973e9753d6SMatthew G. Knepley /* Transform residual to real space */ 47983e9753d6SMatthew G. Knepley /* Add residual to elemVec */ 47993e9753d6SMatthew G. Knepley /* Loop over domain */ 48003e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 48013e9753d6SMatthew G. Knepley 48023e9753d6SMatthew G. Knepley /* FVM */ 48033e9753d6SMatthew G. Knepley /* Get geometric data */ 48043e9753d6SMatthew G. Knepley /* If using gradients */ 48053e9753d6SMatthew G. Knepley /* Compute gradient data */ 48063e9753d6SMatthew G. Knepley /* Loop over domain faces */ 48073e9753d6SMatthew G. Knepley /* Count computational faces */ 48083e9753d6SMatthew G. Knepley /* Reconstruct cell gradient */ 48093e9753d6SMatthew G. Knepley /* Loop over domain cells */ 48103e9753d6SMatthew G. Knepley /* Limit cell gradients */ 48113e9753d6SMatthew G. Knepley /* Handle boundary values */ 48123e9753d6SMatthew G. Knepley /* Loop over domain faces */ 48133e9753d6SMatthew G. Knepley /* Read out field, centroid, normal, volume for each side of face */ 48143e9753d6SMatthew G. Knepley /* Riemann solve over faces */ 48153e9753d6SMatthew G. Knepley /* Loop over domain faces */ 48163e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 48173e9753d6SMatthew G. Knepley /* TODO Change printFEM to printDisc here */ 48183e9753d6SMatthew G. Knepley if (mesh->printFEM) { 48193e9753d6SMatthew G. Knepley Vec locFbc; 48203e9753d6SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 48213e9753d6SMatthew G. Knepley PetscScalar *zeroes; 48223e9753d6SMatthew G. Knepley 48239566063dSJacob Faibussowitsch PetscCall(VecDuplicate(locF,&locFbc)); 48249566063dSJacob Faibussowitsch PetscCall(VecCopy(locF,locFbc)); 48259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section,&pStart,&pEnd)); 48269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(section,&maxDof)); 48279566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(maxDof,&zeroes)); 48283e9753d6SMatthew G. Knepley for (p = pStart; p < pEnd; p++) { 48299566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(locFbc,section,p,zeroes,INSERT_BC_VALUES)); 48303e9753d6SMatthew G. Knepley } 48319566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroes)); 48329566063dSJacob Faibussowitsch PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 48339566063dSJacob Faibussowitsch PetscCall(VecDestroy(&locFbc)); 48343e9753d6SMatthew G. Knepley } 48359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM,dm,0,0,0)); 48363e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 48373e9753d6SMatthew G. Knepley } 48383e9753d6SMatthew G. Knepley 48396528b96dSMatthew G. Knepley /* 48406528b96dSMatthew G. Knepley 1) Allow multiple kernels for BdResidual for hybrid DS 48416528b96dSMatthew G. Knepley 48426528b96dSMatthew G. Knepley DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux 48436528b96dSMatthew G. Knepley 48446528b96dSMatthew G. Knepley DONE 3) Change DMGetCellFields() to get different aux data a[] for each side 48456528b96dSMatthew G. Knepley - I think I just need to replace a[] with the closure from each face 48466528b96dSMatthew G. Knepley 48476528b96dSMatthew G. Knepley 4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before 48486528b96dSMatthew G. Knepley */ 484906ad1575SMatthew G. Knepley PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 48503e9753d6SMatthew G. Knepley { 48513e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 48523e9753d6SMatthew G. Knepley const char *name = "Hybrid Residual"; 485304c51a94SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 48543e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 48556528b96dSMatthew G. Knepley PetscDS ds = NULL; 48566528b96dSMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 485704c51a94SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 48583e9753d6SMatthew G. Knepley PetscSection section = NULL; 48593e9753d6SMatthew G. Knepley DMField coordField = NULL; 48606528b96dSMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a[3]; 48613e9753d6SMatthew G. Knepley PetscScalar *elemVec; 48623e9753d6SMatthew G. Knepley IS chunkIS; 48633e9753d6SMatthew G. Knepley const PetscInt *cells; 48643e9753d6SMatthew G. Knepley PetscInt *faces; 48653e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 48666528b96dSMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux[3], numChunks, cellChunkSize, chunk; 48673e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 48683e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 48693e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 48703e9753d6SMatthew G. Knepley 48713e9753d6SMatthew G. Knepley PetscFunctionBegin; 48725fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 48735fedec97SMatthew G. Knepley const char *name; 48749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) key[0].label, &name)); 487563a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 48765fedec97SMatthew G. Knepley } 48779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM,dm,0,0,0)); 48783e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 48793e9753d6SMatthew G. Knepley /* FEM */ 48809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 48819566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 48823e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 48839566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 48849566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 48851059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds)); 48869566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 48879566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 48889566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 488904c51a94SMatthew G. Knepley if (locA[2]) { 48901059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 48911059d808SMatthew G. Knepley 48929566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 48931059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2])); 48949566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 48956528b96dSMatthew G. Knepley { 48966528b96dSMatthew G. Knepley const PetscInt *cone; 48976528b96dSMatthew G. Knepley PetscInt c; 48986528b96dSMatthew G. Knepley 48991059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 49006528b96dSMatthew G. Knepley for (c = 0; c < 2; ++c) { 49016528b96dSMatthew G. Knepley const PetscInt *support; 49026528b96dSMatthew G. Knepley PetscInt ssize, s; 49036528b96dSMatthew G. Knepley 49049566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 49059566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 49061059d808SMatthew G. Knepley PetscCheck(ssize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 49071059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 49081059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 49091059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 49109566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 49119566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 491204c51a94SMatthew G. Knepley else {dmAux[c] = dmAux[2];} 49139566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c])); 49149566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 49156528b96dSMatthew G. Knepley } 49166528b96dSMatthew G. Knepley } 49173e9753d6SMatthew G. Knepley } 49183e9753d6SMatthew G. Knepley /* 2: Setup geometric data */ 49199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 49209566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 49213e9753d6SMatthew G. Knepley if (maxDegree > 1) { 49229566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 49233e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49243e9753d6SMatthew G. Knepley PetscFE fe; 49253e9753d6SMatthew G. Knepley 49269566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *) &fe)); 49273e9753d6SMatthew G. Knepley if (fe) { 49289566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 49299566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) quads[f])); 49303e9753d6SMatthew G. Knepley } 49313e9753d6SMatthew G. Knepley } 49323e9753d6SMatthew G. Knepley } 49333e9753d6SMatthew G. Knepley /* Loop over chunks */ 49343e9753d6SMatthew G. Knepley cellChunkSize = numCells; 49353e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal) numCells)/cellChunkSize); 4936a4158a15SMatthew G. Knepley PetscCall(PetscCalloc1(1*cellChunkSize, &faces)); 4937a4158a15SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1*cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 49383e9753d6SMatthew G. Knepley /* Extract field coefficients */ 49393e9753d6SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 49409566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 49419566063dSJacob Faibussowitsch PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a)); 49429566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, cellChunkSize*totDim, MPIU_SCALAR, &elemVec)); 49433e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 49443e9753d6SMatthew G. Knepley PetscInt cS = cStart+chunk*cellChunkSize, cE = PetscMin(cS+cellChunkSize, cEnd), numCells = cE - cS, c; 49453e9753d6SMatthew G. Knepley 49469566063dSJacob Faibussowitsch PetscCall(PetscMemzero(elemVec, cellChunkSize*totDim * sizeof(PetscScalar))); 49473e9753d6SMatthew G. Knepley /* Get faces */ 49483e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 49493e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 49503e9753d6SMatthew G. Knepley const PetscInt *cone; 49519566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 4952a4158a15SMatthew G. Knepley faces[0*cellChunkSize+(c-cS)] = cone[0]; 4953a4158a15SMatthew G. Knepley /*faces[1*cellChunkSize+(c-cS)] = cone[1];*/ 49543e9753d6SMatthew G. Knepley } 4955a4158a15SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 1*cellChunkSize, faces, PETSC_USE_POINTER)); 49563e9753d6SMatthew G. Knepley /* Get geometric data */ 49573e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 49589566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 49599566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 49603e9753d6SMatthew G. Knepley } else { 49613e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49629566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 49633e9753d6SMatthew G. Knepley } 49643e9753d6SMatthew G. Knepley } 49653e9753d6SMatthew G. Knepley /* Loop over fields */ 49663e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49673e9753d6SMatthew G. Knepley PetscFE fe; 49683e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 4969148442b3SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 49703e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 49713e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 49725fedec97SMatthew G. Knepley PetscBool isCohesiveField; 49733e9753d6SMatthew G. Knepley 49749566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *) &fe)); 49753e9753d6SMatthew G. Knepley if (!fe) continue; 49769566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 49779566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 49789566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 49793e9753d6SMatthew G. Knepley blockSize = Nb; 49803e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 49819566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 49823e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 49833e9753d6SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 49843e9753d6SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 49853e9753d6SMatthew G. Knepley offset = numCells - Nr; 49869566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom,0,offset,&chunkGeom)); 49879566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom,offset,numCells,&remGeom)); 49889566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 49895fedec97SMatthew G. Knepley chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE; 49906528b96dSMatthew G. Knepley key[0].field = f; 49916528b96dSMatthew G. Knepley key[1].field = f; 49925fedec97SMatthew G. Knepley key[2].field = f; 49939566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVec)); 49949566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux[0], &a[0][offset*totDimAux[0]], t, &elemVec[offset*totDim])); 49959566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVec)); 49969566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux[1], &a[1][offset*totDimAux[1]], t, &elemVec[offset*totDim])); 49979566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVec)); 49989566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux[2], &a[2][offset*totDimAux[2]], t, &elemVec[offset*totDim])); 49999566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom,offset,numCells,&remGeom)); 50009566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom,0,offset,&chunkGeom)); 50013e9753d6SMatthew G. Knepley } 50023e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 50033e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 50043e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 50053e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 50063e9753d6SMatthew G. Knepley 50079566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind*totDim])); 50083e9753d6SMatthew G. Knepley if (ghostLabel) { 50093e9753d6SMatthew G. Knepley PetscInt ghostVal; 50103e9753d6SMatthew G. Knepley 50119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel,cell,&ghostVal)); 50123e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 50133e9753d6SMatthew G. Knepley } 50149566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind*totDim], ADD_ALL_VALUES)); 50153e9753d6SMatthew G. Knepley } 50163e9753d6SMatthew G. Knepley } 50179566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 50189566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a)); 50199566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec)); 50209566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 50219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 50229566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 50233e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 50249566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom)); 50259566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 50263e9753d6SMatthew G. Knepley } else { 50273e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50289566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f])); 50299566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 50303e9753d6SMatthew G. Knepley } 50319566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads,geoms)); 50323e9753d6SMatthew G. Knepley } 50339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM,dm,0,0,0)); 50343e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 50353e9753d6SMatthew G. Knepley } 50363e9753d6SMatthew G. Knepley 503745480ffeSMatthew G. Knepley PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS) 50383e9753d6SMatthew G. Knepley { 50393e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 50403e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL, tdm; 50413e9753d6SMatthew G. Knepley DMEnclosureType encAux; 50423e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 50433e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 5044e432b41dSStefano Zampini PetscSection globalSection; 50453e9753d6SMatthew G. Knepley Vec locA = NULL, tv; 50463e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL; 50473e9753d6SMatthew G. Knepley PetscInt v; 50483e9753d6SMatthew G. Knepley PetscInt Nf, totDim, totDimAux = 0; 5049e432b41dSStefano Zampini PetscBool transform; 50503e9753d6SMatthew G. Knepley 50513e9753d6SMatthew G. Knepley PetscFunctionBegin; 50529566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 50539566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 50549566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 50559566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 50569566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 50579566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 50589566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 50599566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 50609566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA)); 50613e9753d6SMatthew G. Knepley if (locA) { 50623e9753d6SMatthew G. Knepley DM dmAux; 50633e9753d6SMatthew G. Knepley 50649566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 50659566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 50669566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 50679566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 50689566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 50699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 50703e9753d6SMatthew G. Knepley } 50713e9753d6SMatthew G. Knepley 50729566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 50733e9753d6SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 50743e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 50753e9753d6SMatthew G. Knepley PetscInt maxDegree; 50763e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 50773e9753d6SMatthew G. Knepley IS pointIS; 50783e9753d6SMatthew G. Knepley const PetscInt *points; 507906ad1575SMatthew G. Knepley PetscFormKey key; 50803e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 50813e9753d6SMatthew G. Knepley 508245480ffeSMatthew G. Knepley key.label = label; 508345480ffeSMatthew G. Knepley key.value = values[v]; 508406ad1575SMatthew G. Knepley key.part = 0; 50859566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 50863e9753d6SMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 50873e9753d6SMatthew G. Knepley { 50883e9753d6SMatthew G. Knepley IS isectIS; 50893e9753d6SMatthew G. Knepley 50903e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */ 50919566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS,pointIS,&isectIS)); 50929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 50933e9753d6SMatthew G. Knepley pointIS = isectIS; 50943e9753d6SMatthew G. Knepley } 50959566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 50969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 50979566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces*totDim, &u, locX_t ? numFaces*totDim : 0, &u_t, numFaces*totDim*totDim, &elemMat, locA ? numFaces*totDimAux : 0, &a)); 50989566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField,pointIS,NULL,&maxDegree)); 50993e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 51009566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField,pointIS,&qGeom)); 51013e9753d6SMatthew G. Knepley } 51023e9753d6SMatthew G. Knepley if (!qGeom) { 51033e9753d6SMatthew G. Knepley PetscFE fe; 51043e9753d6SMatthew G. Knepley 51059566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fe)); 51069566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 51079566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 51083e9753d6SMatthew G. Knepley } 51099566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 51109566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField,pointIS,qGeom,PETSC_TRUE,&fgeom)); 51113e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 5112f15274beSMatthew Knepley const PetscInt point = points[face], *support; 51133e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 5114f15274beSMatthew Knepley PetscInt i; 51153e9753d6SMatthew G. Knepley 51169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 51179566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 51183e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face*totDim+i] = x[i]; 51199566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 51203e9753d6SMatthew G. Knepley if (locX_t) { 51219566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 51223e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face*totDim+i] = x[i]; 51239566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 51243e9753d6SMatthew G. Knepley } 51253e9753d6SMatthew G. Knepley if (locA) { 51263e9753d6SMatthew G. Knepley PetscInt subp; 51279566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 51289566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 51293e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face*totDimAux+i] = x[i]; 51309566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 51313e9753d6SMatthew G. Knepley } 51323e9753d6SMatthew G. Knepley } 51339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numFaces*totDim*totDim)); 51343e9753d6SMatthew G. Knepley { 51353e9753d6SMatthew G. Knepley PetscFE fe; 51363e9753d6SMatthew G. Knepley PetscInt Nb; 51373e9753d6SMatthew G. Knepley /* Conforming batches */ 51383e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 51393e9753d6SMatthew G. Knepley /* Remainder */ 51403e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 51413e9753d6SMatthew G. Knepley PetscInt fieldJ, Nr, offset; 51423e9753d6SMatthew G. Knepley 51439566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fe)); 51449566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 51459566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 51463e9753d6SMatthew G. Knepley blockSize = Nb; 51473e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 51489566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 51493e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches*batchSize); 51503e9753d6SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 51513e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches*batchSize); 51523e9753d6SMatthew G. Knepley offset = numFaces - Nr; 51539566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom,0,offset,&chunkGeom)); 51543e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 515545480ffeSMatthew G. Knepley key.field = fieldI*Nf+fieldJ; 51569566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 51573e9753d6SMatthew G. Knepley } 51589566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom,offset,numFaces,&chunkGeom)); 51593e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 516045480ffeSMatthew G. Knepley key.field = fieldI*Nf+fieldJ; 51619566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Nr, chunkGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, a ? &a[offset*totDimAux] : NULL, t, X_tShift, &elemMat[offset*totDim*totDim])); 51623e9753d6SMatthew G. Knepley } 51639566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom,offset,numFaces,&chunkGeom)); 51643e9753d6SMatthew G. Knepley } 51653e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 51663e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 51673e9753d6SMatthew G. Knepley 51683e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 51699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 51709566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face*totDim*totDim])); 51719566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face*totDim*totDim])); 51729566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, support[0], &elemMat[face*totDim*totDim], ADD_VALUES)); 51733e9753d6SMatthew G. Knepley } 51749566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,pointIS,qGeom,PETSC_TRUE,&fgeom)); 51759566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 51769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 51779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 51789566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemMat, a)); 51793e9753d6SMatthew G. Knepley } 51809566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 51819566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 51823e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 51833e9753d6SMatthew G. Knepley } 51843e9753d6SMatthew G. Knepley 518545480ffeSMatthew G. Knepley PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP) 51863e9753d6SMatthew G. Knepley { 51873e9753d6SMatthew G. Knepley DMField coordField; 51883e9753d6SMatthew G. Knepley DMLabel depthLabel; 51893e9753d6SMatthew G. Knepley IS facetIS; 51903e9753d6SMatthew G. Knepley PetscInt dim; 51913e9753d6SMatthew G. Knepley 51923e9753d6SMatthew G. Knepley PetscFunctionBegin; 51939566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 51949566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 51959566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim-1, &facetIS)); 51969566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 51979566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 51989566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 51993e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 52003e9753d6SMatthew G. Knepley } 52013e9753d6SMatthew G. Knepley 52023e9753d6SMatthew G. Knepley PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user) 52033e9753d6SMatthew G. Knepley { 52043e9753d6SMatthew G. Knepley PetscDS prob; 52053e9753d6SMatthew G. Knepley PetscInt dim, numBd, bd; 52063e9753d6SMatthew G. Knepley DMLabel depthLabel; 52073e9753d6SMatthew G. Knepley DMField coordField = NULL; 52083e9753d6SMatthew G. Knepley IS facetIS; 52093e9753d6SMatthew G. Knepley 52103e9753d6SMatthew G. Knepley PetscFunctionBegin; 52119566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 52129566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 52139566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 52149566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim-1, &facetIS)); 52159566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 52169566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 52173e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 521845480ffeSMatthew G. Knepley PetscWeakForm wf; 52193e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 52203e9753d6SMatthew G. Knepley DMLabel label; 52213e9753d6SMatthew G. Knepley const PetscInt *values; 52223e9753d6SMatthew G. Knepley PetscInt fieldI, numValues; 52233e9753d6SMatthew G. Knepley PetscObject obj; 52243e9753d6SMatthew G. Knepley PetscClassId id; 52253e9753d6SMatthew G. Knepley 52269566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL)); 52279566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj)); 52289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 52293e9753d6SMatthew G. Knepley if ((id != PETSCFE_CLASSID) || (type & DM_BC_ESSENTIAL)) continue; 52309566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 52313e9753d6SMatthew G. Knepley } 52329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 52333e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 52343e9753d6SMatthew G. Knepley } 52353e9753d6SMatthew G. Knepley 523606ad1575SMatthew G. Knepley PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP,void *user) 52373e9753d6SMatthew G. Knepley { 52383e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 52393e9753d6SMatthew G. Knepley const char *name = "Jacobian"; 52409a2a23afSMatthew G. Knepley DM dmAux = NULL, plex, tdm; 52413e9753d6SMatthew G. Knepley DMEnclosureType encAux; 52423e9753d6SMatthew G. Knepley Vec A, tv; 52433e9753d6SMatthew G. Knepley DMField coordField; 52443e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 5245e432b41dSStefano Zampini PetscSection section, globalSection, sectionAux; 52463e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL; 52473e9753d6SMatthew G. Knepley const PetscInt *cells; 52483e9753d6SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 524928351e22SJed Brown PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 5250e04ae0b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform; 52513e9753d6SMatthew G. Knepley 52523e9753d6SMatthew G. Knepley PetscFunctionBegin; 5253e04ae0b4SMatthew G. Knepley if (!cellIS) goto end; 52549566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM,dm,0,0,0)); 52559566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 52569566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 52579566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 52589566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 52599566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 52609566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 52619566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 52629566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob)); 52639566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 52649566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 52659566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 52669566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 52673e9753d6SMatthew G. Knepley /* user passed in the same matrix, avoid double contributions and 52683e9753d6SMatthew G. Knepley only assemble the Jacobian */ 52693e9753d6SMatthew G. Knepley if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE; 52709566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 52713e9753d6SMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 52729566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 52739a2a23afSMatthew G. Knepley if (A) { 52749566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 52759566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 52769566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plex)); 52779566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex, §ionAux)); 52789566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 52799566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 52803e9753d6SMatthew G. Knepley } 52819566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(numCells*totDim,&u,X_t ? numCells*totDim : 0,&u_t,hasJac ? numCells*totDim*totDim : 0,&elemMat,hasPrec ? numCells*totDim*totDim : 0, &elemMatP,hasDyn ? numCells*totDim*totDim : 0, &elemMatD)); 52829566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells*totDimAux, &a)); 52839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 52843e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 52853e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 52863e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 52873e9753d6SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 52883e9753d6SMatthew G. Knepley PetscInt i; 52893e9753d6SMatthew G. Knepley 52909566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 52913e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind*totDim+i] = x[i]; 52929566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 52933e9753d6SMatthew G. Knepley if (X_t) { 52949566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 52953e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind*totDim+i] = x_t[i]; 52969566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 52973e9753d6SMatthew G. Knepley } 52983e9753d6SMatthew G. Knepley if (dmAux) { 52993e9753d6SMatthew G. Knepley PetscInt subcell; 53009566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 53019566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x)); 53023e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind*totDimAux+i] = x[i]; 53039566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x)); 53043e9753d6SMatthew G. Knepley } 53053e9753d6SMatthew G. Knepley } 53069566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells*totDim*totDim)); 53079566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells*totDim*totDim)); 53089566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells*totDim*totDim)); 53093e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 53103e9753d6SMatthew G. Knepley PetscClassId id; 53113e9753d6SMatthew G. Knepley PetscFE fe; 53123e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 53133e9753d6SMatthew G. Knepley PetscInt Nb; 53143e9753d6SMatthew G. Knepley /* Conforming batches */ 53153e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 53163e9753d6SMatthew G. Knepley /* Remainder */ 53173e9753d6SMatthew G. Knepley PetscInt Nr, offset, Nq; 53183e9753d6SMatthew G. Knepley PetscInt maxDegree; 53193e9753d6SMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 53203e9753d6SMatthew G. Knepley 53219566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fe)); 53229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject) fe, &id)); 53233e9753d6SMatthew G. Knepley if (id == PETSCFV_CLASSID) {hasFV = PETSC_TRUE; continue;} 53249566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 53259566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 53269566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree)); 53273e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 53289566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField,cellIS,&qGeom)); 53293e9753d6SMatthew G. Knepley } 53303e9753d6SMatthew G. Knepley if (!qGeom) { 53319566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe,&qGeom)); 53329566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 53333e9753d6SMatthew G. Knepley } 53349566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 53359566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField,cellIS,qGeom,PETSC_FALSE,&cgeomFEM)); 53363e9753d6SMatthew G. Knepley blockSize = Nb; 53373e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 53389566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 53393e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 53403e9753d6SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 53413e9753d6SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 53423e9753d6SMatthew G. Knepley offset = numCells - Nr; 53439566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM,0,offset,&chunkGeom)); 53449566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM,offset,numCells,&remGeom)); 53453e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 53466528b96dSMatthew G. Knepley key.field = fieldI*Nf+fieldJ; 53473e9753d6SMatthew G. Knepley if (hasJac) { 53489566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 53499566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, X_tShift, &elemMat[offset*totDim*totDim])); 53503e9753d6SMatthew G. Knepley } 53513e9753d6SMatthew G. Knepley if (hasPrec) { 53529566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP)); 53539566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, X_tShift, &elemMatP[offset*totDim*totDim])); 53543e9753d6SMatthew G. Knepley } 53553e9753d6SMatthew G. Knepley if (hasDyn) { 53569566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 53579566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, X_tShift, &elemMatD[offset*totDim*totDim])); 53583e9753d6SMatthew G. Knepley } 53593e9753d6SMatthew G. Knepley } 53609566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM,offset,numCells,&remGeom)); 53619566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM,0,offset,&chunkGeom)); 53629566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,qGeom,PETSC_FALSE,&cgeomFEM)); 53639566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 53643e9753d6SMatthew G. Knepley } 53653e9753d6SMatthew G. Knepley /* Add contribution from X_t */ 53663e9753d6SMatthew G. Knepley if (hasDyn) {for (c = 0; c < numCells*totDim*totDim; ++c) elemMat[c] += X_tShift*elemMatD[c];} 53673e9753d6SMatthew G. Knepley if (hasFV) { 53683e9753d6SMatthew G. Knepley PetscClassId id; 53693e9753d6SMatthew G. Knepley PetscFV fv; 53703e9753d6SMatthew G. Knepley PetscInt offsetI, NcI, NbI = 1, fc, f; 53713e9753d6SMatthew G. Knepley 53723e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 53739566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fv)); 53749566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI)); 53759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject) fv, &id)); 53763e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 53773e9753d6SMatthew G. Knepley /* Put in the identity */ 53789566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcI)); 53793e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 53803e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 53813e9753d6SMatthew G. Knepley const PetscInt eOffset = cind*totDim*totDim; 53823e9753d6SMatthew G. Knepley for (fc = 0; fc < NcI; ++fc) { 53833e9753d6SMatthew G. Knepley for (f = 0; f < NbI; ++f) { 53843e9753d6SMatthew G. Knepley const PetscInt i = offsetI + f*NcI+fc; 53853e9753d6SMatthew G. Knepley if (hasPrec) { 53863e9753d6SMatthew G. Knepley if (hasJac) {elemMat[eOffset+i*totDim+i] = 1.0;} 53873e9753d6SMatthew G. Knepley elemMatP[eOffset+i*totDim+i] = 1.0; 53883e9753d6SMatthew G. Knepley } else {elemMat[eOffset+i*totDim+i] = 1.0;} 53893e9753d6SMatthew G. Knepley } 53903e9753d6SMatthew G. Knepley } 53913e9753d6SMatthew G. Knepley } 53923e9753d6SMatthew G. Knepley } 53933e9753d6SMatthew G. Knepley /* No allocated space for FV stuff, so ignore the zero entries */ 53949566063dSJacob Faibussowitsch PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); 53953e9753d6SMatthew G. Knepley } 53963e9753d6SMatthew G. Knepley /* Insert values into matrix */ 53973e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 53983e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 53993e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 54003e9753d6SMatthew G. Knepley 54013e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 54029566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind*totDim*totDim])); 54033e9753d6SMatthew G. Knepley if (hasPrec) { 54043e9753d6SMatthew G. Knepley if (hasJac) { 54059566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind*totDim*totDim])); 54069566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[cind*totDim*totDim], ADD_VALUES)); 54073e9753d6SMatthew G. Knepley } 54089566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind*totDim*totDim])); 54099566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMatP[cind*totDim*totDim], ADD_VALUES)); 54103e9753d6SMatthew G. Knepley } else { 54113e9753d6SMatthew G. Knepley if (hasJac) { 54129566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind*totDim*totDim])); 54139566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMat[cind*totDim*totDim], ADD_VALUES)); 54143e9753d6SMatthew G. Knepley } 54153e9753d6SMatthew G. Knepley } 54163e9753d6SMatthew G. Knepley } 54179566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 54189566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 54199566063dSJacob Faibussowitsch PetscCall(PetscFree5(u,u_t,elemMat,elemMatP,elemMatD)); 54203e9753d6SMatthew G. Knepley if (dmAux) { 54219566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 54229566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 54233e9753d6SMatthew G. Knepley } 54243e9753d6SMatthew G. Knepley /* Compute boundary integrals */ 54259566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user)); 54263e9753d6SMatthew G. Knepley /* Assemble matrix */ 5427e04ae0b4SMatthew G. Knepley end: 5428e04ae0b4SMatthew G. Knepley { 5429e04ae0b4SMatthew G. Knepley PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp; 5430e04ae0b4SMatthew G. Knepley 5431e04ae0b4SMatthew G. Knepley PetscCallMPI(MPI_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject) dm))); 54323e9753d6SMatthew G. Knepley if (hasJac && hasPrec) { 54339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 54349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 54353e9753d6SMatthew G. Knepley } 5436e04ae0b4SMatthew G. Knepley } 54379566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 54389566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 54399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM,dm,0,0,0)); 54403e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 54413e9753d6SMatthew G. Knepley } 54423e9753d6SMatthew G. Knepley 544306ad1575SMatthew G. Knepley PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user) 54443e9753d6SMatthew G. Knepley { 54453e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 54463e9753d6SMatthew G. Knepley const char *name = "Hybrid Jacobian"; 5447148442b3SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 5448148442b3SMatthew G. Knepley DMLabel ghostLabel = NULL; 54493e9753d6SMatthew G. Knepley DM plex = NULL; 54503e9753d6SMatthew G. Knepley DM plexA = NULL; 5451148442b3SMatthew G. Knepley PetscDS ds = NULL; 5452148442b3SMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 5453148442b3SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 54543e9753d6SMatthew G. Knepley PetscSection section = NULL; 5455148442b3SMatthew G. Knepley PetscSection sectionAux[3] = {NULL, NULL, NULL}; 54563e9753d6SMatthew G. Knepley DMField coordField = NULL; 5457148442b3SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a[3]; 54583e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP; 5459e432b41dSStefano Zampini PetscSection globalSection; 54603e9753d6SMatthew G. Knepley IS chunkIS; 54613e9753d6SMatthew G. Knepley const PetscInt *cells; 54623e9753d6SMatthew G. Knepley PetscInt *faces; 54633e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 5464148442b3SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, totDim, totDimAux[3], numChunks, cellChunkSize, chunk; 54653e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 54663e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 54673e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 5468e432b41dSStefano Zampini PetscBool hasBdJac, hasBdPrec; 54693e9753d6SMatthew G. Knepley 54703e9753d6SMatthew G. Knepley PetscFunctionBegin; 54715fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 54725fedec97SMatthew G. Knepley const char *name; 54739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) key[0].label, &name)); 547463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 54755fedec97SMatthew G. Knepley } 54769566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM,dm,0,0,0)); 54779566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 54789566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 54799566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 54809566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 54819566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 54829566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 54831059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds)); 54849566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 54859566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 54869566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac)); 54879566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec)); 54889566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 5489148442b3SMatthew G. Knepley if (locA[2]) { 54901059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 54911059d808SMatthew G. Knepley 54929566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 54939566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA)); 54949566063dSJacob Faibussowitsch PetscCall(DMGetSection(dmAux[2], §ionAux[2])); 54951059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2])); 54969566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 5497148442b3SMatthew G. Knepley { 5498148442b3SMatthew G. Knepley const PetscInt *cone; 5499148442b3SMatthew G. Knepley PetscInt c; 5500148442b3SMatthew G. Knepley 55011059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 5502148442b3SMatthew G. Knepley for (c = 0; c < 2; ++c) { 5503148442b3SMatthew G. Knepley const PetscInt *support; 5504148442b3SMatthew G. Knepley PetscInt ssize, s; 5505148442b3SMatthew G. Knepley 55069566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 55079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 55081059d808SMatthew G. Knepley PetscCheck(ssize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 55091059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 55101059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 55111059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 55129566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 55139566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 5514148442b3SMatthew G. Knepley else {dmAux[c] = dmAux[2];} 55159566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c])); 55169566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 5517148442b3SMatthew G. Knepley } 5518148442b3SMatthew G. Knepley } 55193e9753d6SMatthew G. Knepley } 55209566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 55219566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 55223e9753d6SMatthew G. Knepley if (maxDegree > 1) { 55233e9753d6SMatthew G. Knepley PetscInt f; 55249566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 55253e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 55263e9753d6SMatthew G. Knepley PetscFE fe; 55273e9753d6SMatthew G. Knepley 55289566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *) &fe)); 55293e9753d6SMatthew G. Knepley if (fe) { 55309566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 55319566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) quads[f])); 55323e9753d6SMatthew G. Knepley } 55333e9753d6SMatthew G. Knepley } 55343e9753d6SMatthew G. Knepley } 55353e9753d6SMatthew G. Knepley cellChunkSize = numCells; 55363e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal) numCells)/cellChunkSize); 5537a4158a15SMatthew G. Knepley PetscCall(PetscCalloc1(1*cellChunkSize, &faces)); 5538a4158a15SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1*cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 55399566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 55409566063dSJacob Faibussowitsch PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a)); 55419566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize*totDim*totDim : 0, MPIU_SCALAR, &elemMat)); 55429566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize*totDim*totDim : 0, MPIU_SCALAR, &elemMatP)); 55433e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 55443e9753d6SMatthew G. Knepley PetscInt cS = cStart+chunk*cellChunkSize, cE = PetscMin(cS+cellChunkSize, cEnd), numCells = cE - cS, c; 55453e9753d6SMatthew G. Knepley 55469566063dSJacob Faibussowitsch if (hasBdJac) PetscCall(PetscMemzero(elemMat, numCells*totDim*totDim * sizeof(PetscScalar))); 55479566063dSJacob Faibussowitsch if (hasBdPrec) PetscCall(PetscMemzero(elemMatP, numCells*totDim*totDim * sizeof(PetscScalar))); 55483e9753d6SMatthew G. Knepley /* Get faces */ 55493e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 55503e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 55513e9753d6SMatthew G. Knepley const PetscInt *cone; 55529566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex, cell, &cone)); 5553a4158a15SMatthew G. Knepley faces[0*cellChunkSize+(c-cS)] = cone[0]; 5554a4158a15SMatthew G. Knepley /*faces[2*cellChunkSize+(c-cS)] = cone[1];*/ 55553e9753d6SMatthew G. Knepley } 5556a4158a15SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 1*cellChunkSize, faces, PETSC_USE_POINTER)); 55573e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 55589566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 55599566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 55603e9753d6SMatthew G. Knepley } else { 55613e9753d6SMatthew G. Knepley PetscInt f; 55623e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 55639566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 55643e9753d6SMatthew G. Knepley } 55653e9753d6SMatthew G. Knepley } 55663e9753d6SMatthew G. Knepley 55673e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 55683e9753d6SMatthew G. Knepley PetscFE feI; 55693e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[fieldI]; 55703e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 55713e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI]; 55723e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 55735fedec97SMatthew G. Knepley PetscBool isCohesiveField; 55743e9753d6SMatthew G. Knepley 55759566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *) &feI)); 55763e9753d6SMatthew G. Knepley if (!feI) continue; 55779566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches)); 55789566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 55799566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feI, &Nb)); 55803e9753d6SMatthew G. Knepley blockSize = Nb; 55813e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 55829566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches)); 55833e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 55843e9753d6SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 55853e9753d6SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 55863e9753d6SMatthew G. Knepley offset = numCells - Nr; 55879566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom,0,offset,&chunkGeom)); 55889566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom,offset,numCells,&remGeom)); 55899566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField)); 55903e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 55913e9753d6SMatthew G. Knepley PetscFE feJ; 55923e9753d6SMatthew G. Knepley 55939566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *) &feJ)); 55943e9753d6SMatthew G. Knepley if (!feJ) continue; 5595148442b3SMatthew G. Knepley key[0].field = fieldI*Nf+fieldJ; 5596148442b3SMatthew G. Knepley key[1].field = fieldI*Nf+fieldJ; 55975fedec97SMatthew G. Knepley key[2].field = fieldI*Nf+fieldJ; 5598148442b3SMatthew G. Knepley if (hasBdJac) { 55999566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMat)); 56009566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux[0], &a[0][offset*totDimAux[0]], t, X_tShift, &elemMat[offset*totDim*totDim])); 56019566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMat)); 56029566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux[1], &a[1][offset*totDimAux[1]], t, X_tShift, &elemMat[offset*totDim*totDim])); 5603148442b3SMatthew G. Knepley } 5604148442b3SMatthew G. Knepley if (hasBdPrec) { 56059566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatP)); 56069566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux[0], &a[0][offset*totDimAux[0]], t, X_tShift, &elemMatP[offset*totDim*totDim])); 56079566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatP)); 56089566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux[1], &a[1][offset*totDimAux[1]], t, X_tShift, &elemMatP[offset*totDim*totDim])); 5609148442b3SMatthew G. Knepley } 56105fedec97SMatthew G. Knepley if (hasBdJac) { 56119566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMat)); 56129566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux[2], &a[2][offset*totDimAux[2]], t, X_tShift, &elemMat[offset*totDim*totDim])); 5613148442b3SMatthew G. Knepley } 56145fedec97SMatthew G. Knepley if (hasBdPrec) { 56159566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatP)); 56169566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, dsAux[2], &a[2][offset*totDimAux[2]], t, X_tShift, &elemMatP[offset*totDim*totDim])); 56173e9753d6SMatthew G. Knepley } 56183e9753d6SMatthew G. Knepley } 56199566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom,offset,numCells,&remGeom)); 56209566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom,0,offset,&chunkGeom)); 56213e9753d6SMatthew G. Knepley } 56223e9753d6SMatthew G. Knepley /* Insert values into matrix */ 56233e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 56243e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 56253e9753d6SMatthew G. Knepley const PetscInt cind = c - cS; 56263e9753d6SMatthew G. Knepley 56273e9753d6SMatthew G. Knepley if (hasBdPrec) { 56283e9753d6SMatthew G. Knepley if (hasBdJac) { 56299566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind*totDim*totDim])); 56309566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, Jac, cell, &elemMat[cind*totDim*totDim], ADD_VALUES)); 56313e9753d6SMatthew G. Knepley } 56329566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind*totDim*totDim])); 56339566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatP[cind*totDim*totDim], ADD_VALUES)); 56343e9753d6SMatthew G. Knepley } else if (hasBdJac) { 56359566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind*totDim*totDim])); 56369566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMat[cind*totDim*totDim], ADD_VALUES)); 56373e9753d6SMatthew G. Knepley } 56383e9753d6SMatthew G. Knepley } 56393e9753d6SMatthew G. Knepley } 56409566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 56419566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a)); 56429566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize*totDim*totDim : 0, MPIU_SCALAR, &elemMat)); 56439566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize*totDim*totDim : 0, MPIU_SCALAR, &elemMatP)); 56449566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 56459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 56469566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 56473e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 56489566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom)); 56499566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 56503e9753d6SMatthew G. Knepley } else { 56513e9753d6SMatthew G. Knepley PetscInt f; 56523e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 56539566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,quads[f],PETSC_FALSE, &geoms[f])); 56549566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 56553e9753d6SMatthew G. Knepley } 56569566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads,geoms)); 56573e9753d6SMatthew G. Knepley } 56589566063dSJacob Faibussowitsch if (dmAux[2]) PetscCall(DMDestroy(&plexA)); 56599566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 56609566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM,dm,0,0,0)); 56613e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 56623e9753d6SMatthew G. Knepley } 56638e3a2eefSMatthew G. Knepley 56648e3a2eefSMatthew G. Knepley /* 56658e3a2eefSMatthew G. Knepley DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user. 56668e3a2eefSMatthew G. Knepley 56678e3a2eefSMatthew G. Knepley Input Parameters: 56688e3a2eefSMatthew G. Knepley + dm - The mesh 56698e3a2eefSMatthew G. Knepley . key - The PetscWeakFormKey indcating where integration should happen 567006ad1575SMatthew G. Knepley . cellIS - The cells to integrate over 56718e3a2eefSMatthew G. Knepley . t - The time 56728e3a2eefSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with repsect to X_t 56738e3a2eefSMatthew G. Knepley . X - Local solution vector 56748e3a2eefSMatthew G. Knepley . X_t - Time-derivative of the local solution vector 56758e3a2eefSMatthew G. Knepley . Y - Local input vector 567606ad1575SMatthew G. Knepley - user - the user context 56778e3a2eefSMatthew G. Knepley 56788e3a2eefSMatthew G. Knepley Output Parameter: 56798e3a2eefSMatthew G. Knepley . Z - Local output vector 56808e3a2eefSMatthew G. Knepley 56818e3a2eefSMatthew G. Knepley Note: 56828e3a2eefSMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 56838e3a2eefSMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 56848e3a2eefSMatthew G. Knepley */ 568506ad1575SMatthew G. Knepley PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user) 56868e3a2eefSMatthew G. Knepley { 56878e3a2eefSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 56888e3a2eefSMatthew G. Knepley const char *name = "Jacobian"; 56898e3a2eefSMatthew G. Knepley DM dmAux = NULL, plex, plexAux = NULL; 56908e3a2eefSMatthew G. Knepley DMEnclosureType encAux; 56918e3a2eefSMatthew G. Knepley Vec A; 56928e3a2eefSMatthew G. Knepley DMField coordField; 56938e3a2eefSMatthew G. Knepley PetscDS prob, probAux = NULL; 56948e3a2eefSMatthew G. Knepley PetscQuadrature quad; 56958e3a2eefSMatthew G. Knepley PetscSection section, globalSection, sectionAux; 56968e3a2eefSMatthew G. Knepley PetscScalar *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z; 56978e3a2eefSMatthew G. Knepley const PetscInt *cells; 56988e3a2eefSMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 56998e3a2eefSMatthew G. Knepley PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 57008e3a2eefSMatthew G. Knepley PetscBool hasDyn; 57018e3a2eefSMatthew G. Knepley 57028e3a2eefSMatthew G. Knepley PetscFunctionBegin; 57039566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM,dm,0,0,0)); 57049566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 57058e3a2eefSMatthew G. Knepley if (!cellIS) { 57068e3a2eefSMatthew G. Knepley PetscInt depth; 57078e3a2eefSMatthew G. Knepley 57089566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 57099566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &cellIS)); 57109566063dSJacob Faibussowitsch if (!cellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &cellIS)); 57118e3a2eefSMatthew G. Knepley } else { 57129566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) cellIS)); 57138e3a2eefSMatthew G. Knepley } 57149566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 57159566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 57169566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 57179566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 57189566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob)); 57199566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 57209566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 57219566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 57228e3a2eefSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 57239566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 57248e3a2eefSMatthew G. Knepley if (A) { 57259566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 57269566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 57279566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexAux)); 57289566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexAux, §ionAux)); 57299566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 57309566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 57318e3a2eefSMatthew G. Knepley } 57329566063dSJacob Faibussowitsch PetscCall(VecSet(Z, 0.0)); 57339566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numCells*totDim,&u,X_t ? numCells*totDim : 0,&u_t,numCells*totDim*totDim,&elemMat,hasDyn ? numCells*totDim*totDim : 0, &elemMatD,numCells*totDim,&y,totDim,&z)); 57349566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells*totDimAux, &a)); 57359566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 57368e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 57378e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 57388e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 57398e3a2eefSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 57408e3a2eefSMatthew G. Knepley PetscInt i; 57418e3a2eefSMatthew G. Knepley 57429566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x)); 57438e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind*totDim+i] = x[i]; 57449566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x)); 57458e3a2eefSMatthew G. Knepley if (X_t) { 57469566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t)); 57478e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind*totDim+i] = x_t[i]; 57489566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t)); 57498e3a2eefSMatthew G. Knepley } 57508e3a2eefSMatthew G. Knepley if (dmAux) { 57518e3a2eefSMatthew G. Knepley PetscInt subcell; 57529566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 57539566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 57548e3a2eefSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind*totDimAux+i] = x[i]; 57559566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 57568e3a2eefSMatthew G. Knepley } 57579566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x)); 57588e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) y[cind*totDim+i] = x[i]; 57599566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x)); 57608e3a2eefSMatthew G. Knepley } 57619566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numCells*totDim*totDim)); 57629566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells*totDim*totDim)); 57638e3a2eefSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 57648e3a2eefSMatthew G. Knepley PetscFE fe; 57658e3a2eefSMatthew G. Knepley PetscInt Nb; 57668e3a2eefSMatthew G. Knepley /* Conforming batches */ 57678e3a2eefSMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 57688e3a2eefSMatthew G. Knepley /* Remainder */ 57698e3a2eefSMatthew G. Knepley PetscInt Nr, offset, Nq; 57708e3a2eefSMatthew G. Knepley PetscQuadrature qGeom = NULL; 57718e3a2eefSMatthew G. Knepley PetscInt maxDegree; 57728e3a2eefSMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 57738e3a2eefSMatthew G. Knepley 57749566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fe)); 57759566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 57769566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 57779566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 57789566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree)); 57799566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField,cellIS,&qGeom)); 57808e3a2eefSMatthew G. Knepley if (!qGeom) { 57819566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe,&qGeom)); 57829566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 57838e3a2eefSMatthew G. Knepley } 57849566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 57859566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField,cellIS,qGeom,PETSC_FALSE,&cgeomFEM)); 57868e3a2eefSMatthew G. Knepley blockSize = Nb; 57878e3a2eefSMatthew G. Knepley batchSize = numBlocks * blockSize; 57889566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 57898e3a2eefSMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 57908e3a2eefSMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 57918e3a2eefSMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 57928e3a2eefSMatthew G. Knepley offset = numCells - Nr; 57939566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM,0,offset,&chunkGeom)); 57949566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM,offset,numCells,&remGeom)); 57958e3a2eefSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 57968e3a2eefSMatthew G. Knepley key.field = fieldI*Nf + fieldJ; 57979566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 57989566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, X_tShift, &elemMat[offset*totDim*totDim])); 57998e3a2eefSMatthew G. Knepley if (hasDyn) { 58009566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 58019566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, X_tShift, &elemMatD[offset*totDim*totDim])); 58028e3a2eefSMatthew G. Knepley } 58038e3a2eefSMatthew G. Knepley } 58049566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM,offset,numCells,&remGeom)); 58059566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM,0,offset,&chunkGeom)); 58069566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField,cellIS,qGeom,PETSC_FALSE,&cgeomFEM)); 58079566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 58088e3a2eefSMatthew G. Knepley } 58098e3a2eefSMatthew G. Knepley if (hasDyn) { 58108e3a2eefSMatthew G. Knepley for (c = 0; c < numCells*totDim*totDim; ++c) elemMat[c] += X_tShift*elemMatD[c]; 58118e3a2eefSMatthew G. Knepley } 58128e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 58138e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 58148e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 58158e3a2eefSMatthew G. Knepley const PetscBLASInt M = totDim, one = 1; 58168e3a2eefSMatthew G. Knepley const PetscScalar a = 1.0, b = 0.0; 58178e3a2eefSMatthew G. Knepley 5818*792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind*totDim*totDim], &M, &y[cind*totDim], &one, &b, z, &one)); 58198e3a2eefSMatthew G. Knepley if (mesh->printFEM > 1) { 58209566063dSJacob Faibussowitsch PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind*totDim*totDim])); 58219566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind*totDim])); 58229566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Z", totDim, z)); 58238e3a2eefSMatthew G. Knepley } 58249566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES)); 58258e3a2eefSMatthew G. Knepley } 58269566063dSJacob Faibussowitsch PetscCall(PetscFree6(u,u_t,elemMat,elemMatD,y,z)); 58278e3a2eefSMatthew G. Knepley if (mesh->printFEM) { 58289566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n")); 58299566063dSJacob Faibussowitsch PetscCall(VecView(Z, NULL)); 58308e3a2eefSMatthew G. Knepley } 58311059d808SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 58329566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 58339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 58349566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexAux)); 58359566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 58369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM,dm,0,0,0)); 58378e3a2eefSMatthew G. Knepley PetscFunctionReturn(0); 58388e3a2eefSMatthew G. Knepley } 5839