xref: /petsc/src/dm/impls/plex/plexfem.c (revision 7a1a1bd46a498008fce343367ab18bd499510e89)
1cb1e1211SMatthew G Knepley #include <petsc-private/dmpleximpl.h>   /*I      "petscdmplex.h"   I*/
2cb1e1211SMatthew G Knepley 
30f2d7e86SMatthew G. Knepley #include <petsc-private/petscfeimpl.h>
415496722SMatthew G. Knepley #include <petsc-private/petscfvimpl.h>
5a0845e3aSMatthew G. Knepley 
6cb1e1211SMatthew G Knepley #undef __FUNCT__
7cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexGetScale"
8cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
9cb1e1211SMatthew G Knepley {
10cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex*) dm->data;
11cb1e1211SMatthew G Knepley 
12cb1e1211SMatthew G Knepley   PetscFunctionBegin;
13cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14cb1e1211SMatthew G Knepley   PetscValidPointer(scale, 3);
15cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
16cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
17cb1e1211SMatthew G Knepley }
18cb1e1211SMatthew G Knepley 
19cb1e1211SMatthew G Knepley #undef __FUNCT__
20cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexSetScale"
21cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
22cb1e1211SMatthew G Knepley {
23cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex*) dm->data;
24cb1e1211SMatthew G Knepley 
25cb1e1211SMatthew G Knepley   PetscFunctionBegin;
26cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
28cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
29cb1e1211SMatthew G Knepley }
30cb1e1211SMatthew G Knepley 
31cb1e1211SMatthew G Knepley PETSC_STATIC_INLINE PetscInt epsilon(PetscInt i, PetscInt j, PetscInt k)
32cb1e1211SMatthew G Knepley {
33cb1e1211SMatthew G Knepley   switch (i) {
34cb1e1211SMatthew G Knepley   case 0:
35cb1e1211SMatthew G Knepley     switch (j) {
36cb1e1211SMatthew G Knepley     case 0: return 0;
37cb1e1211SMatthew G Knepley     case 1:
38cb1e1211SMatthew G Knepley       switch (k) {
39cb1e1211SMatthew G Knepley       case 0: return 0;
40cb1e1211SMatthew G Knepley       case 1: return 0;
41cb1e1211SMatthew G Knepley       case 2: return 1;
42cb1e1211SMatthew G Knepley       }
43cb1e1211SMatthew G Knepley     case 2:
44cb1e1211SMatthew G Knepley       switch (k) {
45cb1e1211SMatthew G Knepley       case 0: return 0;
46cb1e1211SMatthew G Knepley       case 1: return -1;
47cb1e1211SMatthew G Knepley       case 2: return 0;
48cb1e1211SMatthew G Knepley       }
49cb1e1211SMatthew G Knepley     }
50cb1e1211SMatthew G Knepley   case 1:
51cb1e1211SMatthew G Knepley     switch (j) {
52cb1e1211SMatthew G Knepley     case 0:
53cb1e1211SMatthew G Knepley       switch (k) {
54cb1e1211SMatthew G Knepley       case 0: return 0;
55cb1e1211SMatthew G Knepley       case 1: return 0;
56cb1e1211SMatthew G Knepley       case 2: return -1;
57cb1e1211SMatthew G Knepley       }
58cb1e1211SMatthew G Knepley     case 1: return 0;
59cb1e1211SMatthew G Knepley     case 2:
60cb1e1211SMatthew G Knepley       switch (k) {
61cb1e1211SMatthew G Knepley       case 0: return 1;
62cb1e1211SMatthew G Knepley       case 1: return 0;
63cb1e1211SMatthew G Knepley       case 2: return 0;
64cb1e1211SMatthew G Knepley       }
65cb1e1211SMatthew G Knepley     }
66cb1e1211SMatthew G Knepley   case 2:
67cb1e1211SMatthew G Knepley     switch (j) {
68cb1e1211SMatthew G Knepley     case 0:
69cb1e1211SMatthew G Knepley       switch (k) {
70cb1e1211SMatthew G Knepley       case 0: return 0;
71cb1e1211SMatthew G Knepley       case 1: return 1;
72cb1e1211SMatthew G Knepley       case 2: return 0;
73cb1e1211SMatthew G Knepley       }
74cb1e1211SMatthew G Knepley     case 1:
75cb1e1211SMatthew G Knepley       switch (k) {
76cb1e1211SMatthew G Knepley       case 0: return -1;
77cb1e1211SMatthew G Knepley       case 1: return 0;
78cb1e1211SMatthew G Knepley       case 2: return 0;
79cb1e1211SMatthew G Knepley       }
80cb1e1211SMatthew G Knepley     case 2: return 0;
81cb1e1211SMatthew G Knepley     }
82cb1e1211SMatthew G Knepley   }
83cb1e1211SMatthew G Knepley   return 0;
84cb1e1211SMatthew G Knepley }
85cb1e1211SMatthew G Knepley 
86cb1e1211SMatthew G Knepley #undef __FUNCT__
87cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexCreateRigidBody"
88cb1e1211SMatthew G Knepley /*@C
89cb1e1211SMatthew G Knepley   DMPlexCreateRigidBody - create rigid body modes from coordinates
90cb1e1211SMatthew G Knepley 
91cb1e1211SMatthew G Knepley   Collective on DM
92cb1e1211SMatthew G Knepley 
93cb1e1211SMatthew G Knepley   Input Arguments:
94cb1e1211SMatthew G Knepley + dm - the DM
95cb1e1211SMatthew G Knepley . section - the local section associated with the rigid field, or NULL for the default section
96cb1e1211SMatthew G Knepley - globalSection - the global section associated with the rigid field, or NULL for the default section
97cb1e1211SMatthew G Knepley 
98cb1e1211SMatthew G Knepley   Output Argument:
99cb1e1211SMatthew G Knepley . sp - the null space
100cb1e1211SMatthew G Knepley 
101cb1e1211SMatthew G Knepley   Note: This is necessary to take account of Dirichlet conditions on the displacements
102cb1e1211SMatthew G Knepley 
103cb1e1211SMatthew G Knepley   Level: advanced
104cb1e1211SMatthew G Knepley 
105cb1e1211SMatthew G Knepley .seealso: MatNullSpaceCreate()
106cb1e1211SMatthew G Knepley @*/
107cb1e1211SMatthew G Knepley PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscSection section, PetscSection globalSection, MatNullSpace *sp)
108cb1e1211SMatthew G Knepley {
109cb1e1211SMatthew G Knepley   MPI_Comm       comm;
110cb1e1211SMatthew G Knepley   Vec            coordinates, localMode, mode[6];
111cb1e1211SMatthew G Knepley   PetscSection   coordSection;
112cb1e1211SMatthew G Knepley   PetscScalar   *coords;
113cb1e1211SMatthew G Knepley   PetscInt       dim, vStart, vEnd, v, n, m, d, i, j;
114cb1e1211SMatthew G Knepley   PetscErrorCode ierr;
115cb1e1211SMatthew G Knepley 
116cb1e1211SMatthew G Knepley   PetscFunctionBegin;
117cb1e1211SMatthew G Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
118c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
119cb1e1211SMatthew G Knepley   if (dim == 1) {
120cb1e1211SMatthew G Knepley     ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr);
121cb1e1211SMatthew G Knepley     PetscFunctionReturn(0);
122cb1e1211SMatthew G Knepley   }
123cb1e1211SMatthew G Knepley   if (!section)       {ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);}
124cb1e1211SMatthew G Knepley   if (!globalSection) {ierr = DMGetDefaultGlobalSection(dm, &globalSection);CHKERRQ(ierr);}
125cb1e1211SMatthew G Knepley   ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr);
126cb1e1211SMatthew G Knepley   ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr);
12769d8a9ceSMatthew G. Knepley   ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr);
128cb1e1211SMatthew G Knepley   ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr);
129cb1e1211SMatthew G Knepley   m    = (dim*(dim+1))/2;
130cb1e1211SMatthew G Knepley   ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr);
131cb1e1211SMatthew G Knepley   ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr);
132cb1e1211SMatthew G Knepley   ierr = VecSetUp(mode[0]);CHKERRQ(ierr);
133cb1e1211SMatthew G Knepley   for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);}
134cb1e1211SMatthew G Knepley   /* Assume P1 */
135cb1e1211SMatthew G Knepley   ierr = DMGetLocalVector(dm, &localMode);CHKERRQ(ierr);
136cb1e1211SMatthew G Knepley   for (d = 0; d < dim; ++d) {
137cb1e1211SMatthew G Knepley     PetscScalar values[3] = {0.0, 0.0, 0.0};
138cb1e1211SMatthew G Knepley 
139cb1e1211SMatthew G Knepley     values[d] = 1.0;
140cb1e1211SMatthew G Knepley     ierr      = VecSet(localMode, 0.0);CHKERRQ(ierr);
141cb1e1211SMatthew G Knepley     for (v = vStart; v < vEnd; ++v) {
142cb1e1211SMatthew G Knepley       ierr = DMPlexVecSetClosure(dm, section, localMode, v, values, INSERT_VALUES);CHKERRQ(ierr);
143cb1e1211SMatthew G Knepley     }
144cb1e1211SMatthew G Knepley     ierr = DMLocalToGlobalBegin(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr);
145cb1e1211SMatthew G Knepley     ierr = DMLocalToGlobalEnd(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr);
146cb1e1211SMatthew G Knepley   }
147cb1e1211SMatthew G Knepley   ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr);
148cb1e1211SMatthew G Knepley   for (d = dim; d < dim*(dim+1)/2; ++d) {
149cb1e1211SMatthew G Knepley     PetscInt i, j, k = dim > 2 ? d - dim : d;
150cb1e1211SMatthew G Knepley 
151cb1e1211SMatthew G Knepley     ierr = VecSet(localMode, 0.0);CHKERRQ(ierr);
152cb1e1211SMatthew G Knepley     for (v = vStart; v < vEnd; ++v) {
153cb1e1211SMatthew G Knepley       PetscScalar values[3] = {0.0, 0.0, 0.0};
154cb1e1211SMatthew G Knepley       PetscInt    off;
155cb1e1211SMatthew G Knepley 
156cb1e1211SMatthew G Knepley       ierr = PetscSectionGetOffset(coordSection, v, &off);CHKERRQ(ierr);
157cb1e1211SMatthew G Knepley       for (i = 0; i < dim; ++i) {
158cb1e1211SMatthew G Knepley         for (j = 0; j < dim; ++j) {
159cb1e1211SMatthew G Knepley           values[j] += epsilon(i, j, k)*PetscRealPart(coords[off+i]);
160cb1e1211SMatthew G Knepley         }
161cb1e1211SMatthew G Knepley       }
162cb1e1211SMatthew G Knepley       ierr = DMPlexVecSetClosure(dm, section, localMode, v, values, INSERT_VALUES);CHKERRQ(ierr);
163cb1e1211SMatthew G Knepley     }
164cb1e1211SMatthew G Knepley     ierr = DMLocalToGlobalBegin(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr);
165cb1e1211SMatthew G Knepley     ierr = DMLocalToGlobalEnd(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr);
166cb1e1211SMatthew G Knepley   }
167cb1e1211SMatthew G Knepley   ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr);
168cb1e1211SMatthew G Knepley   ierr = DMRestoreLocalVector(dm, &localMode);CHKERRQ(ierr);
169cb1e1211SMatthew G Knepley   for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);}
170cb1e1211SMatthew G Knepley   /* Orthonormalize system */
171cb1e1211SMatthew G Knepley   for (i = dim; i < m; ++i) {
172cb1e1211SMatthew G Knepley     PetscScalar dots[6];
173cb1e1211SMatthew G Knepley 
174cb1e1211SMatthew G Knepley     ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr);
175cb1e1211SMatthew G Knepley     for (j = 0; j < i; ++j) dots[j] *= -1.0;
176cb1e1211SMatthew G Knepley     ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr);
177cb1e1211SMatthew G Knepley     ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);
178cb1e1211SMatthew G Knepley   }
179cb1e1211SMatthew G Knepley   ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr);
180cb1e1211SMatthew G Knepley   for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);}
181cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
182cb1e1211SMatthew G Knepley }
183cb1e1211SMatthew G Knepley 
184cb1e1211SMatthew G Knepley #undef __FUNCT__
185a18a7fb9SMatthew G. Knepley #define __FUNCT__ "DMPlexProjectFunctionLabelLocal"
186bf3434eeSMatthew G. Knepley PetscErrorCode DMPlexProjectFunctionLabelLocal(DM dm, DMLabel label, PetscInt numIds, const PetscInt ids[], void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX)
187a18a7fb9SMatthew G. Knepley {
188bf3434eeSMatthew G. Knepley   PetscFE         fe;
189a18a7fb9SMatthew G. Knepley   PetscDualSpace *sp;
190a18a7fb9SMatthew G. Knepley   PetscSection    section;
191a18a7fb9SMatthew G. Knepley   PetscScalar    *values;
192ad96f515SMatthew G. Knepley   PetscBool      *fieldActive;
193*7a1a1bd4SToby Isaac   PetscInt        numFields, numComp, dim, dimEmbed, spDim, totDim = 0, numValues, cStart, cEnd, f, d, v, i, comp;
194a18a7fb9SMatthew G. Knepley   PetscErrorCode  ierr;
195a18a7fb9SMatthew G. Knepley 
196a18a7fb9SMatthew G. Knepley   PetscFunctionBegin;
19756ad4130SToby Isaac   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
19856ad4130SToby Isaac   if (cEnd <= cStart) PetscFunctionReturn(0);
199c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
200*7a1a1bd4SToby Isaac   ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr);
201a18a7fb9SMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
202a18a7fb9SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
203e1d0b1adSMatthew G. Knepley   ierr = PetscMalloc1(numFields,&sp);CHKERRQ(ierr);
204a18a7fb9SMatthew G. Knepley   for (f = 0; f < numFields; ++f) {
205bf3434eeSMatthew G. Knepley     ierr = DMGetField(dm, f, (PetscObject *) &fe);CHKERRQ(ierr);
206bf3434eeSMatthew G. Knepley     ierr = PetscFEGetDualSpace(fe, &sp[f]);CHKERRQ(ierr);
207bf3434eeSMatthew G. Knepley     ierr = PetscFEGetNumComponents(fe, &numComp);CHKERRQ(ierr);
208a18a7fb9SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr);
209a18a7fb9SMatthew G. Knepley     totDim += spDim*numComp;
210a18a7fb9SMatthew G. Knepley   }
211a18a7fb9SMatthew G. Knepley   ierr = DMPlexVecGetClosure(dm, section, localX, cStart, &numValues, NULL);CHKERRQ(ierr);
212a18a7fb9SMatthew G. Knepley   if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section cell closure size %d != dual space dimension %d", numValues, totDim);
213a18a7fb9SMatthew G. Knepley   ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr);
214ad96f515SMatthew G. Knepley   ierr = DMGetWorkArray(dm, numFields, PETSC_BOOL, &fieldActive);CHKERRQ(ierr);
215ad96f515SMatthew G. Knepley   for (f = 0; f < numFields; ++f) fieldActive[f] = funcs[f] ? PETSC_TRUE : PETSC_FALSE;
216a18a7fb9SMatthew G. Knepley   for (i = 0; i < numIds; ++i) {
217a18a7fb9SMatthew G. Knepley     IS              pointIS;
218a18a7fb9SMatthew G. Knepley     const PetscInt *points;
219a18a7fb9SMatthew G. Knepley     PetscInt        n, p;
220a18a7fb9SMatthew G. Knepley 
221a18a7fb9SMatthew G. Knepley     ierr = DMLabelGetStratumIS(label, ids[i], &pointIS);CHKERRQ(ierr);
222a18a7fb9SMatthew G. Knepley     ierr = ISGetLocalSize(pointIS, &n);CHKERRQ(ierr);
223a18a7fb9SMatthew G. Knepley     ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr);
224a18a7fb9SMatthew G. Knepley     for (p = 0; p < n; ++p) {
225a18a7fb9SMatthew G. Knepley       const PetscInt  point = points[p];
226e1d0b1adSMatthew G. Knepley       PetscFECellGeom geom;
227a18a7fb9SMatthew G. Knepley 
228a18a7fb9SMatthew G. Knepley       if ((point < cStart) || (point >= cEnd)) continue;
229e1d0b1adSMatthew G. Knepley       ierr          = DMPlexComputeCellGeometryFEM(dm, point, NULL, geom.v0, geom.J, NULL, &geom.detJ);CHKERRQ(ierr);
230*7a1a1bd4SToby Isaac       geom.dim      = dim;
231*7a1a1bd4SToby Isaac       geom.dimEmbed = dimEmbed;
232a18a7fb9SMatthew G. Knepley       for (f = 0, v = 0; f < numFields; ++f) {
233a18a7fb9SMatthew G. Knepley         void * const ctx = ctxs ? ctxs[f] : NULL;
234bf3434eeSMatthew G. Knepley 
235bf3434eeSMatthew G. Knepley         ierr = DMGetField(dm, f, (PetscObject *) &fe);CHKERRQ(ierr);
236bf3434eeSMatthew G. Knepley         ierr = PetscFEGetNumComponents(fe, &numComp);CHKERRQ(ierr);
237a18a7fb9SMatthew G. Knepley         ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr);
238a18a7fb9SMatthew G. Knepley         for (d = 0; d < spDim; ++d) {
239a18a7fb9SMatthew G. Knepley           if (funcs[f]) {
240e1d0b1adSMatthew G. Knepley             ierr = PetscDualSpaceApply(sp[f], d, &geom, numComp, funcs[f], ctx, &values[v]);CHKERRQ(ierr);
241a18a7fb9SMatthew G. Knepley           } else {
242a18a7fb9SMatthew G. Knepley             for (comp = 0; comp < numComp; ++comp) values[v+comp] = 0.0;
243a18a7fb9SMatthew G. Knepley           }
244a18a7fb9SMatthew G. Knepley           v += numComp;
245a18a7fb9SMatthew G. Knepley         }
246a18a7fb9SMatthew G. Knepley       }
247ad96f515SMatthew G. Knepley       ierr = DMPlexVecSetFieldClosure_Internal(dm, section, localX, fieldActive, point, values, mode);CHKERRQ(ierr);
248a18a7fb9SMatthew G. Knepley     }
249a18a7fb9SMatthew G. Knepley     ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr);
250a18a7fb9SMatthew G. Knepley     ierr = ISDestroy(&pointIS);CHKERRQ(ierr);
251a18a7fb9SMatthew G. Knepley   }
252a18a7fb9SMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr);
253ad96f515SMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, numFields, PETSC_BOOL, &fieldActive);CHKERRQ(ierr);
254e1d0b1adSMatthew G. Knepley   ierr = PetscFree(sp);CHKERRQ(ierr);
255a18a7fb9SMatthew G. Knepley   PetscFunctionReturn(0);
256a18a7fb9SMatthew G. Knepley }
257a18a7fb9SMatthew G. Knepley 
258a18a7fb9SMatthew G. Knepley #undef __FUNCT__
259cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexProjectFunctionLocal"
2600f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexProjectFunctionLocal(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX)
261cb1e1211SMatthew G Knepley {
26272f94c41SMatthew G. Knepley   PetscDualSpace *sp;
26315496722SMatthew G. Knepley   PetscInt       *numComp;
26472f94c41SMatthew G. Knepley   PetscSection    section;
26572f94c41SMatthew G. Knepley   PetscScalar    *values;
266*7a1a1bd4SToby Isaac   PetscInt        numFields, dim, dimEmbed, spDim, totDim = 0, numValues, cStart, cEnd, c, f, d, v, comp;
267cb1e1211SMatthew G Knepley   PetscErrorCode  ierr;
268cb1e1211SMatthew G Knepley 
269cb1e1211SMatthew G Knepley   PetscFunctionBegin;
27056ad4130SToby Isaac   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
27156ad4130SToby Isaac   if (cEnd <= cStart) PetscFunctionReturn(0);
272cb1e1211SMatthew G Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
27372f94c41SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
27415496722SMatthew G. Knepley   ierr = PetscMalloc2(numFields, &sp, numFields, &numComp);CHKERRQ(ierr);
27572f94c41SMatthew G. Knepley   for (f = 0; f < numFields; ++f) {
27615496722SMatthew G. Knepley     PetscObject  obj;
27715496722SMatthew G. Knepley     PetscClassId id;
2780f2d7e86SMatthew G. Knepley 
27915496722SMatthew G. Knepley     ierr = DMGetField(dm, f, &obj);CHKERRQ(ierr);
28015496722SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
28115496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
28215496722SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
28315496722SMatthew G. Knepley 
28415496722SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &numComp[f]);CHKERRQ(ierr);
2850f2d7e86SMatthew G. Knepley       ierr = PetscFEGetDualSpace(fe, &sp[f]);CHKERRQ(ierr);
28615496722SMatthew G. Knepley       ierr = PetscObjectReference((PetscObject) sp[f]);CHKERRQ(ierr);
28715496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
28815496722SMatthew G. Knepley       PetscFV         fv = (PetscFV) obj;
28915496722SMatthew G. Knepley       PetscQuadrature q;
29015496722SMatthew G. Knepley 
29115496722SMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &numComp[f]);CHKERRQ(ierr);
29215496722SMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &q);CHKERRQ(ierr);
29315496722SMatthew G. Knepley       ierr = PetscDualSpaceCreate(PetscObjectComm((PetscObject) fv), &sp[f]);CHKERRQ(ierr);
29415496722SMatthew G. Knepley       ierr = PetscDualSpaceSetDM(sp[f], dm);CHKERRQ(ierr);
29515496722SMatthew G. Knepley       ierr = PetscDualSpaceSetType(sp[f], PETSCDUALSPACESIMPLE);CHKERRQ(ierr);
29615496722SMatthew G. Knepley       ierr = PetscDualSpaceSimpleSetDimension(sp[f], 1);CHKERRQ(ierr);
29715496722SMatthew G. Knepley       ierr = PetscDualSpaceSimpleSetFunctional(sp[f], 0, q);CHKERRQ(ierr);
29815496722SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f);
29972f94c41SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr);
30015496722SMatthew G. Knepley     totDim += spDim*numComp[f];
301cb1e1211SMatthew G Knepley   }
302c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
303*7a1a1bd4SToby Isaac   ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr);
30472f94c41SMatthew G. Knepley   ierr = DMPlexVecGetClosure(dm, section, localX, cStart, &numValues, NULL);CHKERRQ(ierr);
30572f94c41SMatthew G. Knepley   if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section cell closure size %d != dual space dimension %d", numValues, totDim);
30672f94c41SMatthew G. Knepley   ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr);
30772f94c41SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
308e1d0b1adSMatthew G. Knepley     PetscFECellGeom geom;
309cb1e1211SMatthew G Knepley 
310e1d0b1adSMatthew G. Knepley     ierr          = DMPlexComputeCellGeometryFEM(dm, c, NULL, geom.v0, geom.J, NULL, &geom.detJ);CHKERRQ(ierr);
311*7a1a1bd4SToby Isaac     geom.dim      = dim;
312*7a1a1bd4SToby Isaac     geom.dimEmbed = dimEmbed;
31372f94c41SMatthew G. Knepley     for (f = 0, v = 0; f < numFields; ++f) {
314c110b1eeSGeoffrey Irving       void *const ctx = ctxs ? ctxs[f] : NULL;
3150f2d7e86SMatthew G. Knepley 
31672f94c41SMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr);
31772f94c41SMatthew G. Knepley       for (d = 0; d < spDim; ++d) {
318120386c5SMatthew G. Knepley         if (funcs[f]) {
319e1d0b1adSMatthew G. Knepley           ierr = PetscDualSpaceApply(sp[f], d, &geom, numComp[f], funcs[f], ctx, &values[v]);CHKERRQ(ierr);
320120386c5SMatthew G. Knepley         } else {
32115496722SMatthew G. Knepley           for (comp = 0; comp < numComp[f]; ++comp) values[v+comp] = 0.0;
322120386c5SMatthew G. Knepley         }
32315496722SMatthew G. Knepley         v += numComp[f];
324cb1e1211SMatthew G Knepley       }
325cb1e1211SMatthew G Knepley     }
32672f94c41SMatthew G. Knepley     ierr = DMPlexVecSetClosure(dm, section, localX, c, values, mode);CHKERRQ(ierr);
327cb1e1211SMatthew G Knepley   }
32872f94c41SMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr);
32915496722SMatthew G. Knepley   for (f = 0; f < numFields; ++f) {ierr = PetscDualSpaceDestroy(&sp[f]);CHKERRQ(ierr);}
33015496722SMatthew G. Knepley   ierr = PetscFree2(sp, numComp);CHKERRQ(ierr);
331cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
332cb1e1211SMatthew G Knepley }
333cb1e1211SMatthew G Knepley 
334cb1e1211SMatthew G Knepley #undef __FUNCT__
3350f2d7e86SMatthew G. Knepley #define __FUNCT__ "DMPlexProjectFieldLocal"
3363bc3b0a0SMatthew G. Knepley PetscErrorCode DMPlexProjectFieldLocal(DM dm, Vec localU, void (**funcs)(const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscReal [], PetscScalar []), InsertMode mode, Vec localX)
3370f2d7e86SMatthew G. Knepley {
3380f2d7e86SMatthew G. Knepley   DM                dmAux;
3392764a2aaSMatthew G. Knepley   PetscDS           prob, probAux;
3400f2d7e86SMatthew G. Knepley   Vec               A;
341326413afSMatthew G. Knepley   PetscSection      section, sectionAux;
342326413afSMatthew G. Knepley   PetscScalar      *values, *u, *u_x, *a, *a_x;
3430f2d7e86SMatthew G. Knepley   PetscReal        *x, *v0, *J, *invJ, detJ, **basisField, **basisFieldDer, **basisFieldAux, **basisFieldDerAux;
344326413afSMatthew G. Knepley   PetscInt          Nf, dim, spDim, totDim, numValues, cStart, cEnd, c, f, d, v, comp;
3450f2d7e86SMatthew G. Knepley   PetscErrorCode    ierr;
3460f2d7e86SMatthew G. Knepley 
3470f2d7e86SMatthew G. Knepley   PetscFunctionBegin;
3482764a2aaSMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
349c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
3500f2d7e86SMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
3510f2d7e86SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr);
3520f2d7e86SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
3532764a2aaSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
3542764a2aaSMatthew G. Knepley   ierr = PetscDSGetTabulation(prob, &basisField, &basisFieldDer);CHKERRQ(ierr);
3552764a2aaSMatthew G. Knepley   ierr = PetscDSGetEvaluationArrays(prob, &u, NULL, &u_x);CHKERRQ(ierr);
3562764a2aaSMatthew G. Knepley   ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr);
3570f2d7e86SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr);
3580f2d7e86SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr);
3590f2d7e86SMatthew G. Knepley   if (dmAux) {
3602764a2aaSMatthew G. Knepley     ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr);
361326413afSMatthew G. Knepley     ierr = DMGetDefaultSection(dmAux, &sectionAux);CHKERRQ(ierr);
3622764a2aaSMatthew G. Knepley     ierr = PetscDSGetTabulation(prob, &basisFieldAux, &basisFieldDerAux);CHKERRQ(ierr);
3632764a2aaSMatthew G. Knepley     ierr = PetscDSGetEvaluationArrays(probAux, &a, NULL, &a_x);CHKERRQ(ierr);
3640f2d7e86SMatthew G. Knepley   }
365d7ddef95SMatthew G. Knepley   ierr = DMPlexInsertBoundaryValues(dm, localU, 0.0, NULL, NULL, NULL);CHKERRQ(ierr);
3660f2d7e86SMatthew G. Knepley   ierr = DMPlexVecGetClosure(dm, section, localX, cStart, &numValues, NULL);CHKERRQ(ierr);
3670f2d7e86SMatthew G. Knepley   if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section cell closure size %d != dual space dimension %d", numValues, totDim);
3680f2d7e86SMatthew G. Knepley   ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr);
3690f2d7e86SMatthew G. Knepley   ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr);
3700f2d7e86SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
371326413afSMatthew G. Knepley     PetscScalar *coefficients = NULL, *coefficientsAux = NULL;
372326413afSMatthew G. Knepley 
3738e0841e0SMatthew G. Knepley     ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
374326413afSMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, section, localU, c, NULL, &coefficients);CHKERRQ(ierr);
375326413afSMatthew G. Knepley     if (dmAux) {ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &coefficientsAux);CHKERRQ(ierr);}
3760f2d7e86SMatthew G. Knepley     for (f = 0, v = 0; f < Nf; ++f) {
3773113607cSMatthew G. Knepley       PetscFE        fe;
3783113607cSMatthew G. Knepley       PetscDualSpace sp;
3793113607cSMatthew G. Knepley       PetscInt       Ncf;
3803113607cSMatthew G. Knepley 
3812764a2aaSMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr);
3823113607cSMatthew G. Knepley       ierr = PetscFEGetDualSpace(fe, &sp);CHKERRQ(ierr);
3833113607cSMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Ncf);CHKERRQ(ierr);
3843113607cSMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(sp, &spDim);CHKERRQ(ierr);
3850f2d7e86SMatthew G. Knepley       for (d = 0; d < spDim; ++d) {
3860f2d7e86SMatthew G. Knepley         PetscQuadrature  quad;
3870f2d7e86SMatthew G. Knepley         const PetscReal *points, *weights;
3880f2d7e86SMatthew G. Knepley         PetscInt         numPoints, q;
3890f2d7e86SMatthew G. Knepley 
3900f2d7e86SMatthew G. Knepley         if (funcs[f]) {
3913113607cSMatthew G. Knepley           ierr = PetscDualSpaceGetFunctional(sp, d, &quad);CHKERRQ(ierr);
3920f2d7e86SMatthew G. Knepley           ierr = PetscQuadratureGetData(quad, NULL, &numPoints, &points, &weights);CHKERRQ(ierr);
3933113607cSMatthew G. Knepley           ierr = PetscFEGetTabulation(fe, numPoints, points, &basisField[f], &basisFieldDer[f], NULL);CHKERRQ(ierr);
3940f2d7e86SMatthew G. Knepley           for (q = 0; q < numPoints; ++q) {
3950f2d7e86SMatthew G. Knepley             CoordinatesRefToReal(dim, dim, v0, J, &points[q*dim], x);
396326413afSMatthew G. Knepley             ierr = EvaluateFieldJets(prob,    PETSC_FALSE, q, invJ, coefficients,    NULL, u, u_x, NULL);CHKERRQ(ierr);
397326413afSMatthew G. Knepley             ierr = EvaluateFieldJets(probAux, PETSC_FALSE, q, invJ, coefficientsAux, NULL, a, a_x, NULL);CHKERRQ(ierr);
3983bc3b0a0SMatthew G. Knepley             (*funcs[f])(u, NULL, u_x, a, NULL, a_x, x, &values[v]);
3990f2d7e86SMatthew G. Knepley           }
4003113607cSMatthew G. Knepley           ierr = PetscFERestoreTabulation(fe, numPoints, points, &basisField[f], &basisFieldDer[f], NULL);CHKERRQ(ierr);
4010f2d7e86SMatthew G. Knepley         } else {
4020f2d7e86SMatthew G. Knepley           for (comp = 0; comp < Ncf; ++comp) values[v+comp] = 0.0;
4030f2d7e86SMatthew G. Knepley         }
4040f2d7e86SMatthew G. Knepley         v += Ncf;
4050f2d7e86SMatthew G. Knepley       }
4060f2d7e86SMatthew G. Knepley     }
407326413afSMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, section, localU, c, NULL, &coefficients);CHKERRQ(ierr);
408326413afSMatthew G. Knepley     if (dmAux) {ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &coefficientsAux);CHKERRQ(ierr);}
4090f2d7e86SMatthew G. Knepley     ierr = DMPlexVecSetClosure(dm, section, localX, c, values, mode);CHKERRQ(ierr);
4100f2d7e86SMatthew G. Knepley   }
4110f2d7e86SMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr);
4120f2d7e86SMatthew G. Knepley   ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr);
4130f2d7e86SMatthew G. Knepley   PetscFunctionReturn(0);
4140f2d7e86SMatthew G. Knepley }
4150f2d7e86SMatthew G. Knepley 
4160f2d7e86SMatthew G. Knepley #undef __FUNCT__
417d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FEM_Internal"
418d7ddef95SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FEM_Internal(DM dm, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(const PetscReal[], PetscScalar *, void *), void *ctx, Vec locX)
41955f2e967SMatthew G. Knepley {
42055f2e967SMatthew G. Knepley   void        (**funcs)(const PetscReal x[], PetscScalar *u, void *ctx);
42155f2e967SMatthew G. Knepley   void         **ctxs;
422d7ddef95SMatthew G. Knepley   PetscInt       numFields;
423d7ddef95SMatthew G. Knepley   PetscErrorCode ierr;
424d7ddef95SMatthew G. Knepley 
425d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
426d7ddef95SMatthew G. Knepley   ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr);
427d7ddef95SMatthew G. Knepley   ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr);
428d7ddef95SMatthew G. Knepley   funcs[field] = func;
429d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
430d7ddef95SMatthew G. Knepley   ierr = DMPlexProjectFunctionLabelLocal(dm, label, numids, ids, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr);
431d7ddef95SMatthew G. Knepley   ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr);
432d7ddef95SMatthew G. Knepley   PetscFunctionReturn(0);
433d7ddef95SMatthew G. Knepley }
434d7ddef95SMatthew G. Knepley 
435d7ddef95SMatthew G. Knepley #undef __FUNCT__
436d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FVM_Internal"
437d7ddef95SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FVM_Internal(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad,
438d7ddef95SMatthew G. Knepley                                                               PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX)
439d7ddef95SMatthew G. Knepley {
440d7ddef95SMatthew G. Knepley   PetscFV            fv;
441d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
442d7ddef95SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *grad;
443d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
444d7ddef95SMatthew G. Knepley   PetscInt           dim, fStart, fEnd, pdim, i;
445d7ddef95SMatthew G. Knepley   PetscErrorCode     ierr;
446d7ddef95SMatthew G. Knepley 
447d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
448d7ddef95SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
449d7ddef95SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr);
450d7ddef95SMatthew G. Knepley   ierr = DMGetField(dm, field, (PetscObject *) &fv);CHKERRQ(ierr);
451d7ddef95SMatthew G. Knepley   ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr);
452d7ddef95SMatthew G. Knepley   ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
453d7ddef95SMatthew G. Knepley   ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr);
454d7ddef95SMatthew G. Knepley   ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);
455d7ddef95SMatthew G. Knepley   if (Grad) {
456d7ddef95SMatthew G. Knepley     ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr);
457d7ddef95SMatthew G. Knepley     ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr);
458d7ddef95SMatthew G. Knepley     ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr);
459d7ddef95SMatthew G. Knepley     ierr = DMGetWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr);
460d7ddef95SMatthew G. Knepley   }
461d7ddef95SMatthew G. Knepley   ierr = VecGetArray(locX, &x);CHKERRQ(ierr);
462d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
463d7ddef95SMatthew G. Knepley     IS              faceIS;
464d7ddef95SMatthew G. Knepley     const PetscInt *faces;
465d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
466d7ddef95SMatthew G. Knepley 
467d7ddef95SMatthew G. Knepley     ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr);
468d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
469d7ddef95SMatthew G. Knepley     ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr);
470d7ddef95SMatthew G. Knepley     ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr);
471d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
472d7ddef95SMatthew G. Knepley       const PetscInt         face = faces[f], *cells;
473d7ddef95SMatthew G. Knepley       const PetscFVFaceGeom *fg;
474d7ddef95SMatthew G. Knepley 
475d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
476d7ddef95SMatthew G. Knepley       ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr);
477d7ddef95SMatthew G. Knepley       ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr);
478d7ddef95SMatthew G. Knepley       if (Grad) {
479d7ddef95SMatthew G. Knepley         const PetscFVCellGeom *cg;
480d7ddef95SMatthew G. Knepley         const PetscScalar     *cx, *cgrad;
481d7ddef95SMatthew G. Knepley         PetscScalar           *xG;
482d7ddef95SMatthew G. Knepley         PetscReal              dx[3];
483d7ddef95SMatthew G. Knepley         PetscInt               d;
484d7ddef95SMatthew G. Knepley 
485d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr);
486d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr);
487d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr);
488d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRef(dm, cells[1], x, &xG);CHKERRQ(ierr);
489d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
490d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx);
491d7ddef95SMatthew G. Knepley         ierr = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx);CHKERRQ(ierr);
492d7ddef95SMatthew G. Knepley       } else {
493d7ddef95SMatthew G. Knepley         const PetscScalar *xI;
494d7ddef95SMatthew G. Knepley         PetscScalar       *xG;
495d7ddef95SMatthew G. Knepley 
496d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr);
497d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRef(dm, cells[1], x, &xG);CHKERRQ(ierr);
498d7ddef95SMatthew G. Knepley         ierr = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);CHKERRQ(ierr);
499d7ddef95SMatthew G. Knepley       }
500d7ddef95SMatthew G. Knepley     }
501d7ddef95SMatthew G. Knepley     ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr);
502d7ddef95SMatthew G. Knepley     ierr = ISDestroy(&faceIS);CHKERRQ(ierr);
503d7ddef95SMatthew G. Knepley   }
504d7ddef95SMatthew G. Knepley   ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr);
505d7ddef95SMatthew G. Knepley   if (Grad) {
506d7ddef95SMatthew G. Knepley     ierr = DMRestoreWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr);
507d7ddef95SMatthew G. Knepley     ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr);
508d7ddef95SMatthew G. Knepley   }
509d7ddef95SMatthew G. Knepley   ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);
510d7ddef95SMatthew G. Knepley   ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
511d7ddef95SMatthew G. Knepley   PetscFunctionReturn(0);
512d7ddef95SMatthew G. Knepley }
513d7ddef95SMatthew G. Knepley 
514d7ddef95SMatthew G. Knepley #undef __FUNCT__
515d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues"
516d7ddef95SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues(DM dm, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
517d7ddef95SMatthew G. Knepley {
518d7ddef95SMatthew G. Knepley   PetscInt       numBd, b;
51955f2e967SMatthew G. Knepley   PetscErrorCode ierr;
52055f2e967SMatthew G. Knepley 
52155f2e967SMatthew G. Knepley   PetscFunctionBegin;
52255f2e967SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
523d7ddef95SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 2);
524d7ddef95SMatthew G. Knepley   if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);}
525d7ddef95SMatthew G. Knepley   if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);}
526d7ddef95SMatthew G. Knepley   if (gradFVM)     {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);}
52755f2e967SMatthew G. Knepley   ierr = DMPlexGetNumBoundary(dm, &numBd);CHKERRQ(ierr);
52855f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
52955f2e967SMatthew G. Knepley     PetscBool       isEssential;
530d7ddef95SMatthew G. Knepley     const char     *labelname;
531d7ddef95SMatthew G. Knepley     DMLabel         label;
532d7ddef95SMatthew G. Knepley     PetscInt        field;
533d7ddef95SMatthew G. Knepley     PetscObject     obj;
534d7ddef95SMatthew G. Knepley     PetscClassId    id;
53555f2e967SMatthew G. Knepley     void          (*func)();
536d7ddef95SMatthew G. Knepley     PetscInt        numids;
537d7ddef95SMatthew G. Knepley     const PetscInt *ids;
53855f2e967SMatthew G. Knepley     void           *ctx;
53955f2e967SMatthew G. Knepley 
54063d5297fSMatthew G. Knepley     ierr = DMPlexGetBoundary(dm, b, &isEssential, NULL, &labelname, &field, &func, &numids, &ids, &ctx);CHKERRQ(ierr);
541d7ddef95SMatthew G. Knepley     if (!isEssential) continue;
54263d5297fSMatthew G. Knepley     ierr = DMPlexGetLabel(dm, labelname, &label);CHKERRQ(ierr);
543d7ddef95SMatthew G. Knepley     ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
544d7ddef95SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
545d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
546d7ddef95SMatthew G. Knepley       ierr = DMPlexInsertBoundaryValues_FEM_Internal(dm, field, label, numids, ids, (void (*)(const PetscReal[], PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr);
547d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
548d7ddef95SMatthew G. Knepley       ierr = DMPlexInsertBoundaryValues_FVM_Internal(dm, time, faceGeomFVM, cellGeomFVM, gradFVM,
549d7ddef95SMatthew G. Knepley                                                      field, label, numids, ids, (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr);
550d7ddef95SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
55155f2e967SMatthew G. Knepley   }
55255f2e967SMatthew G. Knepley   PetscFunctionReturn(0);
55355f2e967SMatthew G. Knepley }
55455f2e967SMatthew G. Knepley 
555cb1e1211SMatthew G Knepley #undef __FUNCT__
556cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexComputeL2Diff"
557cb1e1211SMatthew G Knepley /*@C
558cb1e1211SMatthew G Knepley   DMPlexComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
559cb1e1211SMatthew G Knepley 
560cb1e1211SMatthew G Knepley   Input Parameters:
561cb1e1211SMatthew G Knepley + dm    - The DM
562cb1e1211SMatthew G Knepley . funcs - The functions to evaluate for each field component
56351259fa3SMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each function, or NULL.
564cb1e1211SMatthew G Knepley - X     - The coefficient vector u_h
565cb1e1211SMatthew G Knepley 
566cb1e1211SMatthew G Knepley   Output Parameter:
567cb1e1211SMatthew G Knepley . diff - The diff ||u - u_h||_2
568cb1e1211SMatthew G Knepley 
569cb1e1211SMatthew G Knepley   Level: developer
570cb1e1211SMatthew G Knepley 
57115496722SMatthew G. Knepley .seealso: DMPlexProjectFunction(), DMPlexComputeL2FieldDiff(), DMPlexComputeL2GradientDiff()
572878cb397SSatish Balay @*/
5730f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeL2Diff(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
574cb1e1211SMatthew G Knepley {
575cb1e1211SMatthew G Knepley   const PetscInt   debug = 0;
576cb1e1211SMatthew G Knepley   PetscSection     section;
577c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
578cb1e1211SMatthew G Knepley   Vec              localX;
57915496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
580cb1e1211SMatthew G Knepley   PetscReal       *coords, *v0, *J, *invJ, detJ;
581cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
58215496722SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
58315496722SMatthew G. Knepley   PetscInt         dim, numFields, numComponents = 0, numQuadPoints, cStart, cEnd, c, field, fieldOffset;
584cb1e1211SMatthew G Knepley   PetscErrorCode   ierr;
585cb1e1211SMatthew G Knepley 
586cb1e1211SMatthew G Knepley   PetscFunctionBegin;
587c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
588cb1e1211SMatthew G Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
589cb1e1211SMatthew G Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
590cb1e1211SMatthew G Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
591cb1e1211SMatthew G Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
592cb1e1211SMatthew G Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
593cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
59415496722SMatthew G. Knepley     PetscObject  obj;
59515496722SMatthew G. Knepley     PetscClassId id;
596c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
597c5bbbd5bSMatthew G. Knepley 
59815496722SMatthew G. Knepley     ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
59915496722SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
60015496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
60115496722SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
60215496722SMatthew G. Knepley 
6030f2d7e86SMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
6040f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
60515496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
60615496722SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
60715496722SMatthew G. Knepley 
60815496722SMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr);
60915496722SMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
61015496722SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
611c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
612cb1e1211SMatthew G Knepley   }
61315496722SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr);
6140f2d7e86SMatthew G. Knepley   ierr = DMPlexProjectFunctionLocal(dm, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr);
61515496722SMatthew G. Knepley   ierr = PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,dim,&coords,dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr);
616cb1e1211SMatthew G Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
617cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
618a1e44745SMatthew G. Knepley     PetscScalar *x = NULL;
619cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
620cb1e1211SMatthew G Knepley 
6218e0841e0SMatthew G. Knepley     ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
622cb1e1211SMatthew G Knepley     if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c);
623cb1e1211SMatthew G Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
624cb1e1211SMatthew G Knepley 
62515496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
62615496722SMatthew G. Knepley       PetscObject  obj;
62715496722SMatthew G. Knepley       PetscClassId id;
628c110b1eeSGeoffrey Irving       void * const ctx = ctxs ? ctxs[field] : NULL;
62915496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
630cb1e1211SMatthew G Knepley 
63115496722SMatthew G. Knepley       ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
63215496722SMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
63315496722SMatthew G. Knepley       if (id == PETSCFE_CLASSID)      {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);}
63415496722SMatthew G. Knepley       else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;}
63515496722SMatthew G. Knepley       else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
636cb1e1211SMatthew G Knepley       if (debug) {
637cb1e1211SMatthew G Knepley         char title[1024];
638cb1e1211SMatthew G Knepley         ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr);
63915496722SMatthew G. Knepley         ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr);
640cb1e1211SMatthew G Knepley       }
641cb1e1211SMatthew G Knepley       for (q = 0; q < numQuadPoints; ++q) {
64215496722SMatthew G. Knepley         CoordinatesRefToReal(dim, dim, v0, J, &quadPoints[q*dim], coords);
643c110b1eeSGeoffrey Irving         (*funcs[field])(coords, funcVal, ctx);
64415496722SMatthew G. Knepley         if (id == PETSCFE_CLASSID)      {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
64515496722SMatthew G. Knepley         else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
64615496722SMatthew G. Knepley         else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
64715496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
64815496722SMatthew G. Knepley           if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "    elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);}
64915496722SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ;
650cb1e1211SMatthew G Knepley         }
651cb1e1211SMatthew G Knepley       }
65215496722SMatthew G. Knepley       fieldOffset += Nb*Nc;
653cb1e1211SMatthew G Knepley     }
654cb1e1211SMatthew G Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
655cb1e1211SMatthew G Knepley     if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);}
656cb1e1211SMatthew G Knepley     localDiff += elemDiff;
657cb1e1211SMatthew G Knepley   }
65815496722SMatthew G. Knepley   ierr  = PetscFree6(funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr);
659cb1e1211SMatthew G Knepley   ierr  = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
66086a74ee0SMatthew G. Knepley   ierr  = MPI_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
661cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
662cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
663cb1e1211SMatthew G Knepley }
664cb1e1211SMatthew G Knepley 
665cb1e1211SMatthew G Knepley #undef __FUNCT__
66640e14135SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeL2GradientDiff"
66740e14135SMatthew G. Knepley /*@C
66840e14135SMatthew G. Knepley   DMPlexComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
66940e14135SMatthew G. Knepley 
67040e14135SMatthew G. Knepley   Input Parameters:
67140e14135SMatthew G. Knepley + dm    - The DM
67240e14135SMatthew G. Knepley . funcs - The gradient functions to evaluate for each field component
67351259fa3SMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each function, or NULL.
67440e14135SMatthew G. Knepley . X     - The coefficient vector u_h
67540e14135SMatthew G. Knepley - n     - The vector to project along
67640e14135SMatthew G. Knepley 
67740e14135SMatthew G. Knepley   Output Parameter:
67840e14135SMatthew G. Knepley . diff - The diff ||(grad u - grad u_h) . n||_2
67940e14135SMatthew G. Knepley 
68040e14135SMatthew G. Knepley   Level: developer
68140e14135SMatthew G. Knepley 
68240e14135SMatthew G. Knepley .seealso: DMPlexProjectFunction(), DMPlexComputeL2Diff()
68340e14135SMatthew G. Knepley @*/
6840f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeL2GradientDiff(DM dm, void (**funcs)(const PetscReal [], const PetscReal [], PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
685cb1e1211SMatthew G Knepley {
68640e14135SMatthew G. Knepley   const PetscInt  debug = 0;
687cb1e1211SMatthew G Knepley   PetscSection    section;
68840e14135SMatthew G. Knepley   PetscQuadrature quad;
68940e14135SMatthew G. Knepley   Vec             localX;
69040e14135SMatthew G. Knepley   PetscScalar    *funcVal, *interpolantVec;
69140e14135SMatthew G. Knepley   PetscReal      *coords, *realSpaceDer, *v0, *J, *invJ, detJ;
69240e14135SMatthew G. Knepley   PetscReal       localDiff = 0.0;
69340e14135SMatthew G. Knepley   PetscInt        dim, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset, comp;
694cb1e1211SMatthew G Knepley   PetscErrorCode  ierr;
695cb1e1211SMatthew G Knepley 
696cb1e1211SMatthew G Knepley   PetscFunctionBegin;
697c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
69840e14135SMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
69940e14135SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
70040e14135SMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
70140e14135SMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
70240e14135SMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
703652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
7040f2d7e86SMatthew G. Knepley     PetscFE  fe;
70540e14135SMatthew G. Knepley     PetscInt Nc;
706652b88e8SMatthew G. Knepley 
7070f2d7e86SMatthew G. Knepley     ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr);
7080f2d7e86SMatthew G. Knepley     ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
7090f2d7e86SMatthew G. Knepley     ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
71040e14135SMatthew G. Knepley     numComponents += Nc;
711652b88e8SMatthew G. Knepley   }
71240e14135SMatthew G. Knepley   /* ierr = DMPlexProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */
71340e14135SMatthew G. Knepley   ierr = PetscMalloc7(numComponents,&funcVal,dim,&coords,dim,&realSpaceDer,dim,&v0,dim*dim,&J,dim*dim,&invJ,dim,&interpolantVec);CHKERRQ(ierr);
71440e14135SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
71540e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
71640e14135SMatthew G. Knepley     PetscScalar *x = NULL;
71740e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
718652b88e8SMatthew G. Knepley 
7198e0841e0SMatthew G. Knepley     ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
72040e14135SMatthew G. Knepley     if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c);
72140e14135SMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
72240e14135SMatthew G. Knepley 
72340e14135SMatthew G. Knepley     for (field = 0, comp = 0, fieldOffset = 0; field < numFields; ++field) {
7240f2d7e86SMatthew G. Knepley       PetscFE          fe;
72551259fa3SMatthew G. Knepley       void * const     ctx = ctxs ? ctxs[field] : NULL;
72621454ff5SMatthew G. Knepley       const PetscReal *quadPoints, *quadWeights;
72740e14135SMatthew G. Knepley       PetscReal       *basisDer;
72821454ff5SMatthew G. Knepley       PetscInt         numQuadPoints, Nb, Ncomp, q, d, e, fc, f, g;
72940e14135SMatthew G. Knepley 
7300f2d7e86SMatthew G. Knepley       ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr);
73121454ff5SMatthew G. Knepley       ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr);
7320f2d7e86SMatthew G. Knepley       ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr);
7330f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Ncomp);CHKERRQ(ierr);
7340f2d7e86SMatthew G. Knepley       ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr);
73540e14135SMatthew G. Knepley       if (debug) {
73640e14135SMatthew G. Knepley         char title[1024];
73740e14135SMatthew G. Knepley         ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr);
73840e14135SMatthew G. Knepley         ierr = DMPrintCellVector(c, title, Nb*Ncomp, &x[fieldOffset]);CHKERRQ(ierr);
739652b88e8SMatthew G. Knepley       }
74040e14135SMatthew G. Knepley       for (q = 0; q < numQuadPoints; ++q) {
74140e14135SMatthew G. Knepley         for (d = 0; d < dim; d++) {
74240e14135SMatthew G. Knepley           coords[d] = v0[d];
74340e14135SMatthew G. Knepley           for (e = 0; e < dim; e++) {
74440e14135SMatthew G. Knepley             coords[d] += J[d*dim+e]*(quadPoints[q*dim+e] + 1.0);
745652b88e8SMatthew G. Knepley           }
74640e14135SMatthew G. Knepley         }
74751259fa3SMatthew G. Knepley         (*funcs[field])(coords, n, funcVal, ctx);
74840e14135SMatthew G. Knepley         for (fc = 0; fc < Ncomp; ++fc) {
74940e14135SMatthew G. Knepley           PetscScalar interpolant = 0.0;
75040e14135SMatthew G. Knepley 
75140e14135SMatthew G. Knepley           for (d = 0; d < dim; ++d) interpolantVec[d] = 0.0;
75240e14135SMatthew G. Knepley           for (f = 0; f < Nb; ++f) {
75340e14135SMatthew G. Knepley             const PetscInt fidx = f*Ncomp+fc;
75440e14135SMatthew G. Knepley 
75540e14135SMatthew G. Knepley             for (d = 0; d < dim; ++d) {
75640e14135SMatthew G. Knepley               realSpaceDer[d] = 0.0;
75740e14135SMatthew G. Knepley               for (g = 0; g < dim; ++g) {
75840e14135SMatthew G. Knepley                 realSpaceDer[d] += invJ[g*dim+d]*basisDer[(q*Nb*Ncomp+fidx)*dim+g];
75940e14135SMatthew G. Knepley               }
76040e14135SMatthew G. Knepley               interpolantVec[d] += x[fieldOffset+fidx]*realSpaceDer[d];
76140e14135SMatthew G. Knepley             }
76240e14135SMatthew G. Knepley           }
76340e14135SMatthew G. Knepley           for (d = 0; d < dim; ++d) interpolant += interpolantVec[d]*n[d];
76440e14135SMatthew G. Knepley           if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "    elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);}
76540e14135SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ;
76640e14135SMatthew G. Knepley         }
76740e14135SMatthew G. Knepley       }
76840e14135SMatthew G. Knepley       comp        += Ncomp;
76940e14135SMatthew G. Knepley       fieldOffset += Nb*Ncomp;
77040e14135SMatthew G. Knepley     }
77140e14135SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
77240e14135SMatthew G. Knepley     if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);}
77340e14135SMatthew G. Knepley     localDiff += elemDiff;
77440e14135SMatthew G. Knepley   }
77540e14135SMatthew G. Knepley   ierr  = PetscFree7(funcVal,coords,realSpaceDer,v0,J,invJ,interpolantVec);CHKERRQ(ierr);
77640e14135SMatthew G. Knepley   ierr  = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
77740e14135SMatthew G. Knepley   ierr  = MPI_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
77840e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
779cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
780cb1e1211SMatthew G Knepley }
781cb1e1211SMatthew G Knepley 
782a0845e3aSMatthew G. Knepley #undef __FUNCT__
78373d901b8SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeL2FieldDiff"
78415496722SMatthew G. Knepley /*@C
78515496722SMatthew G. Knepley   DMPlexComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
78615496722SMatthew G. Knepley 
78715496722SMatthew G. Knepley   Input Parameters:
78815496722SMatthew G. Knepley + dm    - The DM
78915496722SMatthew G. Knepley . funcs - The functions to evaluate for each field component
79015496722SMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each function, or NULL.
79115496722SMatthew G. Knepley - X     - The coefficient vector u_h
79215496722SMatthew G. Knepley 
79315496722SMatthew G. Knepley   Output Parameter:
79415496722SMatthew G. Knepley . diff - The array of differences, ||u^f - u^f_h||_2
79515496722SMatthew G. Knepley 
79615496722SMatthew G. Knepley   Level: developer
79715496722SMatthew G. Knepley 
79815496722SMatthew G. Knepley .seealso: DMPlexProjectFunction(), DMPlexComputeL2Diff(), DMPlexComputeL2GradientDiff()
79915496722SMatthew G. Knepley @*/
8000f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeL2FieldDiff(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
80173d901b8SMatthew G. Knepley {
80273d901b8SMatthew G. Knepley   const PetscInt   debug = 0;
80373d901b8SMatthew G. Knepley   PetscSection     section;
80473d901b8SMatthew G. Knepley   PetscQuadrature  quad;
80573d901b8SMatthew G. Knepley   Vec              localX;
80615496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
80773d901b8SMatthew G. Knepley   PetscReal       *coords, *v0, *J, *invJ, detJ;
80873d901b8SMatthew G. Knepley   PetscReal       *localDiff;
80915496722SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
81015496722SMatthew G. Knepley   PetscInt         dim, numFields, numComponents = 0, numQuadPoints, cStart, cEnd, c, field, fieldOffset;
81173d901b8SMatthew G. Knepley   PetscErrorCode   ierr;
81273d901b8SMatthew G. Knepley 
81373d901b8SMatthew G. Knepley   PetscFunctionBegin;
814c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
81573d901b8SMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
81673d901b8SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
81773d901b8SMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
81873d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
81973d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
82073d901b8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
82115496722SMatthew G. Knepley     PetscObject  obj;
82215496722SMatthew G. Knepley     PetscClassId id;
82373d901b8SMatthew G. Knepley     PetscInt     Nc;
82473d901b8SMatthew G. Knepley 
82515496722SMatthew G. Knepley     ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
82615496722SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
82715496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
82815496722SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
82915496722SMatthew G. Knepley 
8300f2d7e86SMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
8310f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
83215496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
83315496722SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
83415496722SMatthew G. Knepley 
83515496722SMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr);
83615496722SMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
83715496722SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
83873d901b8SMatthew G. Knepley     numComponents += Nc;
83973d901b8SMatthew G. Knepley   }
84015496722SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr);
8410f2d7e86SMatthew G. Knepley   ierr = DMPlexProjectFunctionLocal(dm, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr);
84215496722SMatthew G. Knepley   ierr = PetscCalloc7(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,dim,&coords,dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr);
84373d901b8SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
84473d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
84573d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
84673d901b8SMatthew G. Knepley 
8478e0841e0SMatthew G. Knepley     ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
84873d901b8SMatthew G. Knepley     if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c);
84973d901b8SMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
85073d901b8SMatthew G. Knepley 
85115496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
85215496722SMatthew G. Knepley       PetscObject  obj;
85315496722SMatthew G. Knepley       PetscClassId id;
85473d901b8SMatthew G. Knepley       void * const ctx = ctxs ? ctxs[field] : NULL;
85515496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
85673d901b8SMatthew G. Knepley 
85715496722SMatthew G. Knepley       PetscReal       elemDiff = 0.0;
85815496722SMatthew G. Knepley 
85915496722SMatthew G. Knepley       ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr);
86015496722SMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
86115496722SMatthew G. Knepley       if (id == PETSCFE_CLASSID)      {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);}
86215496722SMatthew G. Knepley       else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;}
86315496722SMatthew G. Knepley       else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
86473d901b8SMatthew G. Knepley       if (debug) {
86573d901b8SMatthew G. Knepley         char title[1024];
86673d901b8SMatthew G. Knepley         ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr);
86715496722SMatthew G. Knepley         ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr);
86873d901b8SMatthew G. Knepley       }
86973d901b8SMatthew G. Knepley       for (q = 0; q < numQuadPoints; ++q) {
87015496722SMatthew G. Knepley         CoordinatesRefToReal(dim, dim, v0, J, &quadPoints[q*dim], coords);
87173d901b8SMatthew G. Knepley         (*funcs[field])(coords, funcVal, ctx);
87215496722SMatthew G. Knepley         if (id == PETSCFE_CLASSID)      {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
87315496722SMatthew G. Knepley         else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
87415496722SMatthew G. Knepley         else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
87515496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
87615496722SMatthew G. Knepley           if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "    elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);}
87715496722SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ;
87873d901b8SMatthew G. Knepley         }
87973d901b8SMatthew G. Knepley       }
88015496722SMatthew G. Knepley       fieldOffset += Nb*Nc;
88173d901b8SMatthew G. Knepley       localDiff[field] += elemDiff;
88273d901b8SMatthew G. Knepley     }
88373d901b8SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
88473d901b8SMatthew G. Knepley   }
88573d901b8SMatthew G. Knepley   ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
88673d901b8SMatthew G. Knepley   ierr = MPI_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
88773d901b8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]);
88815496722SMatthew G. Knepley   ierr = PetscFree7(localDiff,funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr);
88973d901b8SMatthew G. Knepley   PetscFunctionReturn(0);
89073d901b8SMatthew G. Knepley }
89173d901b8SMatthew G. Knepley 
89273d901b8SMatthew G. Knepley #undef __FUNCT__
89373d901b8SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeIntegralFEM"
89473d901b8SMatthew G. Knepley /*@
89573d901b8SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the local integral F from the local input X using pointwise functions specified by the user
89673d901b8SMatthew G. Knepley 
89773d901b8SMatthew G. Knepley   Input Parameters:
89873d901b8SMatthew G. Knepley + dm - The mesh
89973d901b8SMatthew G. Knepley . X  - Local input vector
90073d901b8SMatthew G. Knepley - user - The user context
90173d901b8SMatthew G. Knepley 
90273d901b8SMatthew G. Knepley   Output Parameter:
90373d901b8SMatthew G. Knepley . integral - Local integral for each field
90473d901b8SMatthew G. Knepley 
90573d901b8SMatthew G. Knepley   Level: developer
90673d901b8SMatthew G. Knepley 
90773d901b8SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM()
90873d901b8SMatthew G. Knepley @*/
9090f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscReal *integral, void *user)
91073d901b8SMatthew G. Knepley {
91173d901b8SMatthew G. Knepley   DM_Plex          *mesh  = (DM_Plex *) dm->data;
91273d901b8SMatthew G. Knepley   DM                dmAux;
91373d901b8SMatthew G. Knepley   Vec               localX, A;
9142764a2aaSMatthew G. Knepley   PetscDS           prob, probAux = NULL;
91573d901b8SMatthew G. Knepley   PetscQuadrature   q;
91673d901b8SMatthew G. Knepley   PetscSection      section, sectionAux;
917bbce034cSMatthew G. Knepley   PetscFECellGeom  *cgeom;
91873d901b8SMatthew G. Knepley   PetscScalar      *u, *a = NULL;
9190f2d7e86SMatthew G. Knepley   PetscInt          dim, Nf, f, numCells, cStart, cEnd, c;
9200f2d7e86SMatthew G. Knepley   PetscInt          totDim, totDimAux;
92173d901b8SMatthew G. Knepley   PetscErrorCode    ierr;
92273d901b8SMatthew G. Knepley 
92373d901b8SMatthew G. Knepley   PetscFunctionBegin;
92473d901b8SMatthew G. Knepley   /*ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);*/
92573d901b8SMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
92673d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
92773d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
928c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
92973d901b8SMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
9302764a2aaSMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
9312764a2aaSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
93273d901b8SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr);
93373d901b8SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
93473d901b8SMatthew G. Knepley   numCells = cEnd - cStart;
9350f2d7e86SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {integral[f]    = 0.0;}
93673d901b8SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr);
93773d901b8SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr);
93873d901b8SMatthew G. Knepley   if (dmAux) {
93973d901b8SMatthew G. Knepley     ierr = DMGetDefaultSection(dmAux, &sectionAux);CHKERRQ(ierr);
9402764a2aaSMatthew G. Knepley     ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr);
9412764a2aaSMatthew G. Knepley     ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);
94273d901b8SMatthew G. Knepley   }
943d7ddef95SMatthew G. Knepley   ierr = DMPlexInsertBoundaryValues(dm, localX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr);
944bbce034cSMatthew G. Knepley   ierr = PetscMalloc2(numCells*totDim,&u,numCells,&cgeom);CHKERRQ(ierr);
9450f2d7e86SMatthew G. Knepley   if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);}
94673d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
94773d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
94873d901b8SMatthew G. Knepley     PetscInt     i;
94973d901b8SMatthew G. Knepley 
950bbce034cSMatthew G. Knepley     ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, cgeom[c].v0, cgeom[c].J, cgeom[c].invJ, &cgeom[c].detJ);CHKERRQ(ierr);
951bbce034cSMatthew G. Knepley     if (cgeom[c].detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", cgeom[c].detJ, c);
95273d901b8SMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr);
9530f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i];
95473d901b8SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr);
95573d901b8SMatthew G. Knepley     if (dmAux) {
95673d901b8SMatthew G. Knepley       ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr);
9570f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i];
95873d901b8SMatthew G. Knepley       ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr);
95973d901b8SMatthew G. Knepley     }
96073d901b8SMatthew G. Knepley   }
96173d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
9620f2d7e86SMatthew G. Knepley     PetscFE  fe;
96373d901b8SMatthew G. Knepley     PetscInt numQuadPoints, Nb;
96473d901b8SMatthew G. Knepley     /* Conforming batches */
96573d901b8SMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
96673d901b8SMatthew G. Knepley     /* Remainder */
96773d901b8SMatthew G. Knepley     PetscInt Nr, offset;
96873d901b8SMatthew G. Knepley 
9692764a2aaSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr);
9700f2d7e86SMatthew G. Knepley     ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr);
9710f2d7e86SMatthew G. Knepley     ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr);
9720f2d7e86SMatthew G. Knepley     ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr);
97373d901b8SMatthew G. Knepley     ierr = PetscQuadratureGetData(q, NULL, &numQuadPoints, NULL, NULL);CHKERRQ(ierr);
97473d901b8SMatthew G. Knepley     blockSize = Nb*numQuadPoints;
97573d901b8SMatthew G. Knepley     batchSize = numBlocks * blockSize;
9760f2d7e86SMatthew G. Knepley     ierr =  PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr);
97773d901b8SMatthew G. Knepley     numChunks = numCells / (numBatches*batchSize);
97873d901b8SMatthew G. Knepley     Ne        = numChunks*numBatches*batchSize;
97973d901b8SMatthew G. Knepley     Nr        = numCells % (numBatches*batchSize);
98073d901b8SMatthew G. Knepley     offset    = numCells - Nr;
981bbce034cSMatthew G. Knepley     ierr = PetscFEIntegrate(fe, prob, f, Ne, cgeom, u, probAux, a, integral);CHKERRQ(ierr);
982bbce034cSMatthew G. Knepley     ierr = PetscFEIntegrate(fe, prob, f, Nr, &cgeom[offset], &u[offset*totDim], probAux, &a[offset*totDimAux], integral);CHKERRQ(ierr);
98373d901b8SMatthew G. Knepley   }
984bbce034cSMatthew G. Knepley   ierr = PetscFree2(u,cgeom);CHKERRQ(ierr);
98573d901b8SMatthew G. Knepley   if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);}
98673d901b8SMatthew G. Knepley   if (mesh->printFEM) {
98773d901b8SMatthew G. Knepley     ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Local integral:");CHKERRQ(ierr);
98873d901b8SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", integral[f]);CHKERRQ(ierr);}
98973d901b8SMatthew G. Knepley     ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr);
99073d901b8SMatthew G. Knepley   }
99173d901b8SMatthew G. Knepley   ierr  = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
99273d901b8SMatthew G. Knepley   /* TODO: Allreduce for integral */
99373d901b8SMatthew G. Knepley   /*ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);*/
99473d901b8SMatthew G. Knepley   PetscFunctionReturn(0);
99573d901b8SMatthew G. Knepley }
99673d901b8SMatthew G. Knepley 
99773d901b8SMatthew G. Knepley #undef __FUNCT__
998d69c5d34SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInterpolatorFEM"
999d69c5d34SMatthew G. Knepley /*@
1000d69c5d34SMatthew G. Knepley   DMPlexComputeInterpolatorFEM - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM.
1001d69c5d34SMatthew G. Knepley 
1002d69c5d34SMatthew G. Knepley   Input Parameters:
1003d69c5d34SMatthew G. Knepley + dmf  - The fine mesh
1004d69c5d34SMatthew G. Knepley . dmc  - The coarse mesh
1005d69c5d34SMatthew G. Knepley - user - The user context
1006d69c5d34SMatthew G. Knepley 
1007d69c5d34SMatthew G. Knepley   Output Parameter:
1008934789fcSMatthew G. Knepley . In  - The interpolation matrix
1009d69c5d34SMatthew G. Knepley 
1010d69c5d34SMatthew G. Knepley   Note:
1011d69c5d34SMatthew G. Knepley   The first member of the user context must be an FEMContext.
1012d69c5d34SMatthew G. Knepley 
1013d69c5d34SMatthew G. Knepley   We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator,
1014d69c5d34SMatthew G. Knepley   like a GPU, or vectorize on a multicore machine.
1015d69c5d34SMatthew G. Knepley 
1016d69c5d34SMatthew G. Knepley   Level: developer
1017d69c5d34SMatthew G. Knepley 
1018d69c5d34SMatthew G. Knepley .seealso: DMPlexComputeJacobianFEM()
1019d69c5d34SMatthew G. Knepley @*/
1020934789fcSMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorFEM(DM dmc, DM dmf, Mat In, void *user)
1021d69c5d34SMatthew G. Knepley {
1022d69c5d34SMatthew G. Knepley   DM_Plex          *mesh  = (DM_Plex *) dmc->data;
1023d69c5d34SMatthew G. Knepley   const char       *name  = "Interpolator";
10242764a2aaSMatthew G. Knepley   PetscDS           prob;
1025d69c5d34SMatthew G. Knepley   PetscFE          *feRef;
1026d69c5d34SMatthew G. Knepley   PetscSection      fsection, fglobalSection;
1027d69c5d34SMatthew G. Knepley   PetscSection      csection, cglobalSection;
1028d69c5d34SMatthew G. Knepley   PetscScalar      *elemMat;
1029942a7a06SMatthew G. Knepley   PetscInt          dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c;
10300f2d7e86SMatthew G. Knepley   PetscInt          cTotDim, rTotDim = 0;
1031d69c5d34SMatthew G. Knepley   PetscErrorCode    ierr;
1032d69c5d34SMatthew G. Knepley 
1033d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
1034d69c5d34SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
1035c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr);
1036d69c5d34SMatthew G. Knepley   ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr);
1037d69c5d34SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr);
1038d69c5d34SMatthew G. Knepley   ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr);
1039d69c5d34SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr);
1040d69c5d34SMatthew G. Knepley   ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr);
1041d69c5d34SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr);
10422764a2aaSMatthew G. Knepley   ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr);
1043d69c5d34SMatthew G. Knepley   ierr = PetscMalloc1(Nf,&feRef);CHKERRQ(ierr);
1044d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
10450f2d7e86SMatthew G. Knepley     PetscFE  fe;
10460f2d7e86SMatthew G. Knepley     PetscInt rNb, Nc;
1047d69c5d34SMatthew G. Knepley 
10482764a2aaSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr);
10490f2d7e86SMatthew G. Knepley     ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr);
1050d69c5d34SMatthew G. Knepley     ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr);
10510f2d7e86SMatthew G. Knepley     ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
10520f2d7e86SMatthew G. Knepley     rTotDim += rNb*Nc;
1053d69c5d34SMatthew G. Knepley   }
10542764a2aaSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr);
10550f2d7e86SMatthew G. Knepley   ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr);
10560f2d7e86SMatthew G. Knepley   ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr);
1057d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
1058d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
1059d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
1060d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
1061d69c5d34SMatthew G. Knepley     PetscReal       *points;
1062d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
1063d69c5d34SMatthew G. Knepley 
1064d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
1065d69c5d34SMatthew G. Knepley     ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr);
10660f2d7e86SMatthew G. Knepley     ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr);
1067d69c5d34SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr);
1068d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
1069d69c5d34SMatthew G. Knepley       ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
1070d69c5d34SMatthew G. Knepley       ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, NULL);CHKERRQ(ierr);
1071d69c5d34SMatthew G. Knepley       npoints += Np;
1072d69c5d34SMatthew G. Knepley     }
1073d69c5d34SMatthew G. Knepley     ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr);
1074d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
1075d69c5d34SMatthew G. Knepley       ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
1076d69c5d34SMatthew G. Knepley       ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr);
1077d69c5d34SMatthew G. Knepley       for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d];
1078d69c5d34SMatthew G. Knepley     }
1079d69c5d34SMatthew G. Knepley 
1080d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
10810f2d7e86SMatthew G. Knepley       PetscFE    fe;
1082d69c5d34SMatthew G. Knepley       PetscReal *B;
108336a6d9c0SMatthew G. Knepley       PetscInt   NcJ, cpdim, j;
1084d69c5d34SMatthew G. Knepley 
1085d69c5d34SMatthew G. Knepley       /* Evaluate basis at points */
10862764a2aaSMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, fieldJ, (PetscObject *) &fe);CHKERRQ(ierr);
10870f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr);
10880f2d7e86SMatthew G. Knepley       ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr);
1089ffe73a53SMatthew G. Knepley       /* For now, fields only interpolate themselves */
1090ffe73a53SMatthew G. Knepley       if (fieldI == fieldJ) {
10917c927364SMatthew G. Knepley         if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ);
10920f2d7e86SMatthew G. Knepley         ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);
1093d69c5d34SMatthew G. Knepley         for (i = 0, k = 0; i < fpdim; ++i) {
1094d69c5d34SMatthew G. Knepley           ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
1095d69c5d34SMatthew G. Knepley           ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr);
1096d69c5d34SMatthew G. Knepley           for (p = 0; p < Np; ++p, ++k) {
109736a6d9c0SMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
10980f2d7e86SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p];
109936a6d9c0SMatthew G. Knepley             }
1100d69c5d34SMatthew G. Knepley           }
1101d69c5d34SMatthew G. Knepley         }
11020f2d7e86SMatthew G. Knepley         ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr);
1103ffe73a53SMatthew G. Knepley       }
110436a6d9c0SMatthew G. Knepley       offsetJ += cpdim*NcJ;
1105d69c5d34SMatthew G. Knepley     }
1106d69c5d34SMatthew G. Knepley     offsetI += fpdim*Nc;
1107549a8adaSMatthew G. Knepley     ierr = PetscFree(points);CHKERRQ(ierr);
1108d69c5d34SMatthew G. Knepley   }
11090f2d7e86SMatthew G. Knepley   if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);}
11107f5b169aSMatthew G. Knepley   /* Preallocate matrix */
11117f5b169aSMatthew G. Knepley   {
11127f5b169aSMatthew G. Knepley     PetscHashJK ht;
11137f5b169aSMatthew G. Knepley     PetscLayout rLayout;
11147f5b169aSMatthew G. Knepley     PetscInt   *dnz, *onz, *cellCIndices, *cellFIndices;
11157f5b169aSMatthew G. Knepley     PetscInt    locRows, rStart, rEnd, cell, r;
11167f5b169aSMatthew G. Knepley 
11177f5b169aSMatthew G. Knepley     ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr);
11187f5b169aSMatthew G. Knepley     ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr);
11197f5b169aSMatthew G. Knepley     ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr);
11207f5b169aSMatthew G. Knepley     ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr);
11217f5b169aSMatthew G. Knepley     ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr);
11227f5b169aSMatthew G. Knepley     ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr);
11237f5b169aSMatthew G. Knepley     ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr);
11247f5b169aSMatthew G. Knepley     ierr = PetscCalloc4(locRows,&dnz,locRows,&onz,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr);
11257f5b169aSMatthew G. Knepley     ierr = PetscHashJKCreate(&ht);CHKERRQ(ierr);
11267f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
11277f5b169aSMatthew G. Knepley       ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr);
11287f5b169aSMatthew G. Knepley       for (r = 0; r < rTotDim; ++r) {
11297f5b169aSMatthew G. Knepley         PetscHashJKKey  key;
11307f5b169aSMatthew G. Knepley         PetscHashJKIter missing, iter;
11317f5b169aSMatthew G. Knepley 
11327f5b169aSMatthew G. Knepley         key.j = cellFIndices[r];
11337f5b169aSMatthew G. Knepley         if (key.j < 0) continue;
11347f5b169aSMatthew G. Knepley         for (c = 0; c < cTotDim; ++c) {
11357f5b169aSMatthew G. Knepley           key.k = cellCIndices[c];
11367f5b169aSMatthew G. Knepley           if (key.k < 0) continue;
11377f5b169aSMatthew G. Knepley           ierr = PetscHashJKPut(ht, key, &missing, &iter);CHKERRQ(ierr);
11387f5b169aSMatthew G. Knepley           if (missing) {
11397f5b169aSMatthew G. Knepley             ierr = PetscHashJKSet(ht, iter, 1);CHKERRQ(ierr);
11407f5b169aSMatthew G. Knepley             if ((key.k >= rStart) && (key.k < rEnd)) ++dnz[key.j-rStart];
11417f5b169aSMatthew G. Knepley             else                                     ++onz[key.j-rStart];
11427f5b169aSMatthew G. Knepley           }
11437f5b169aSMatthew G. Knepley         }
11447f5b169aSMatthew G. Knepley       }
11457f5b169aSMatthew G. Knepley     }
11467f5b169aSMatthew G. Knepley     ierr = PetscHashJKDestroy(&ht);CHKERRQ(ierr);
11477f5b169aSMatthew G. Knepley     ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr);
11487f5b169aSMatthew G. Knepley     ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
11497f5b169aSMatthew G. Knepley     ierr = PetscFree4(dnz,onz,cellCIndices,cellFIndices);CHKERRQ(ierr);
11507f5b169aSMatthew G. Knepley   }
11517f5b169aSMatthew G. Knepley   /* Fill matrix */
11527f5b169aSMatthew G. Knepley   ierr = MatZeroEntries(In);CHKERRQ(ierr);
1153d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1154934789fcSMatthew G. Knepley     ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr);
1155d69c5d34SMatthew G. Knepley   }
1156549a8adaSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);}
1157d69c5d34SMatthew G. Knepley   ierr = PetscFree(feRef);CHKERRQ(ierr);
1158549a8adaSMatthew G. Knepley   ierr = PetscFree(elemMat);CHKERRQ(ierr);
1159934789fcSMatthew G. Knepley   ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1160934789fcSMatthew G. Knepley   ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1161d69c5d34SMatthew G. Knepley   if (mesh->printFEM) {
1162d69c5d34SMatthew G. Knepley     ierr = PetscPrintf(PETSC_COMM_WORLD, "%s:\n", name);CHKERRQ(ierr);
1163934789fcSMatthew G. Knepley     ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr);
1164934789fcSMatthew G. Knepley     ierr = MatView(In, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
1165d69c5d34SMatthew G. Knepley   }
1166d69c5d34SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
1167d69c5d34SMatthew G. Knepley   PetscFunctionReturn(0);
1168d69c5d34SMatthew G. Knepley }
11696c73c22cSMatthew G. Knepley 
11706c73c22cSMatthew G. Knepley #undef __FUNCT__
11717c927364SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInjectorFEM"
11727c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
11737c927364SMatthew G. Knepley {
1174e9d4ef1bSMatthew G. Knepley   PetscDS        prob;
11757c927364SMatthew G. Knepley   PetscFE       *feRef;
11767c927364SMatthew G. Knepley   Vec            fv, cv;
11777c927364SMatthew G. Knepley   IS             fis, cis;
11787c927364SMatthew G. Knepley   PetscSection   fsection, fglobalSection, csection, cglobalSection;
11797c927364SMatthew G. Knepley   PetscInt      *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
11807c927364SMatthew G. Knepley   PetscInt       cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, offsetC, offsetF, m;
11817c927364SMatthew G. Knepley   PetscErrorCode ierr;
11827c927364SMatthew G. Knepley 
11837c927364SMatthew G. Knepley   PetscFunctionBegin;
118475a69067SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
1185c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr);
11867c927364SMatthew G. Knepley   ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr);
11877c927364SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr);
11887c927364SMatthew G. Knepley   ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr);
11897c927364SMatthew G. Knepley   ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr);
11907c927364SMatthew G. Knepley   ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr);
11917c927364SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr);
1192e9d4ef1bSMatthew G. Knepley   ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr);
11937c927364SMatthew G. Knepley   ierr = PetscMalloc1(Nf,&feRef);CHKERRQ(ierr);
11947c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
11957c927364SMatthew G. Knepley     PetscFE  fe;
11967c927364SMatthew G. Knepley     PetscInt fNb, Nc;
11977c927364SMatthew G. Knepley 
1198e9d4ef1bSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr);
11997c927364SMatthew G. Knepley     ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr);
12007c927364SMatthew G. Knepley     ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr);
12017c927364SMatthew G. Knepley     ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
12027c927364SMatthew G. Knepley     fTotDim += fNb*Nc;
12037c927364SMatthew G. Knepley   }
1204e9d4ef1bSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr);
12057c927364SMatthew G. Knepley   ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr);
12067c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
12077c927364SMatthew G. Knepley     PetscFE        feC;
12087c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
12097c927364SMatthew G. Knepley     PetscInt       NcF, NcC, fpdim, cpdim;
12107c927364SMatthew G. Knepley 
1211e9d4ef1bSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr);
12127c927364SMatthew G. Knepley     ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr);
12137c927364SMatthew G. Knepley     ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr);
12147c927364SMatthew G. Knepley     if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC);
12157c927364SMatthew G. Knepley     ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr);
12167c927364SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr);
12177c927364SMatthew G. Knepley     ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr);
12187c927364SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr);
12197c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
12207c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
12217c927364SMatthew G. Knepley       const PetscReal *cqpoints;
12227c927364SMatthew G. Knepley       PetscInt         NpC;
12237c927364SMatthew G. Knepley 
12247c927364SMatthew G. Knepley       ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr);
12257c927364SMatthew G. Knepley       ierr = PetscQuadratureGetData(cfunc, NULL, &NpC, &cqpoints, NULL);CHKERRQ(ierr);
12267c927364SMatthew G. Knepley       if (NpC != 1) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
12277c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
12287c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
12297c927364SMatthew G. Knepley         const PetscReal *fqpoints;
12307c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
12317c927364SMatthew G. Knepley         PetscInt         NpF, comp;
12327c927364SMatthew G. Knepley 
12337c927364SMatthew G. Knepley         ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr);
12347c927364SMatthew G. Knepley         ierr = PetscQuadratureGetData(ffunc, NULL, &NpF, &fqpoints, NULL);CHKERRQ(ierr);
12357c927364SMatthew G. Knepley         if (NpC != NpF) continue;
12367c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
12377c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
12387c927364SMatthew G. Knepley         for (comp = 0; comp < NcC; ++comp) {
12397c927364SMatthew G. Knepley           cmap[(offsetC+c)*NcC+comp] = (offsetF+f)*NcF+comp;
12407c927364SMatthew G. Knepley         }
12417c927364SMatthew G. Knepley         break;
12427c927364SMatthew G. Knepley       }
12437c927364SMatthew G. Knepley     }
12447c927364SMatthew G. Knepley     offsetC += cpdim*NcC;
12457c927364SMatthew G. Knepley     offsetF += fpdim*NcF;
12467c927364SMatthew G. Knepley   }
12477c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);}
12487c927364SMatthew G. Knepley   ierr = PetscFree(feRef);CHKERRQ(ierr);
12497c927364SMatthew G. Knepley 
12507c927364SMatthew G. Knepley   ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr);
12517c927364SMatthew G. Knepley   ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr);
12527c927364SMatthew G. Knepley   ierr = VecGetOwnershipRange(cv, &startC, NULL);CHKERRQ(ierr);
12537c927364SMatthew G. Knepley   ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr);
12547c927364SMatthew G. Knepley   ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr);
1255aa7da3c4SMatthew G. Knepley   ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr);
1256aa7da3c4SMatthew G. Knepley   ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr);
12577c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
12587c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
12597c927364SMatthew G. Knepley     ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr);
12607c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
12617c927364SMatthew G. Knepley       if (cellCIndices[d] < 0) continue;
12627c927364SMatthew G. Knepley       if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]);
12637c927364SMatthew G. Knepley       cindices[cellCIndices[d]-startC] = cellCIndices[d];
12647c927364SMatthew G. Knepley       findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]];
12657c927364SMatthew G. Knepley     }
12667c927364SMatthew G. Knepley   }
12677c927364SMatthew G. Knepley   ierr = PetscFree(cmap);CHKERRQ(ierr);
12687c927364SMatthew G. Knepley   ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr);
12697c927364SMatthew G. Knepley 
12707c927364SMatthew G. Knepley   ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr);
12717c927364SMatthew G. Knepley   ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr);
12727c927364SMatthew G. Knepley   ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr);
12737c927364SMatthew G. Knepley   ierr = ISDestroy(&cis);CHKERRQ(ierr);
12747c927364SMatthew G. Knepley   ierr = ISDestroy(&fis);CHKERRQ(ierr);
12757c927364SMatthew G. Knepley   ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr);
12767c927364SMatthew G. Knepley   ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr);
127775a69067SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
1278cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
1279cb1e1211SMatthew G Knepley }
1280