1cb1e1211SMatthew G Knepley #include <petsc-private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2cb1e1211SMatthew G Knepley 30f2d7e86SMatthew G. Knepley #include <petsc-private/petscfeimpl.h> 415496722SMatthew G. Knepley #include <petsc-private/petscfvimpl.h> 5a0845e3aSMatthew G. Knepley 6cb1e1211SMatthew G Knepley #undef __FUNCT__ 7cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexGetScale" 8cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 9cb1e1211SMatthew G Knepley { 10cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 11cb1e1211SMatthew G Knepley 12cb1e1211SMatthew G Knepley PetscFunctionBegin; 13cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14cb1e1211SMatthew G Knepley PetscValidPointer(scale, 3); 15cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 16cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 17cb1e1211SMatthew G Knepley } 18cb1e1211SMatthew G Knepley 19cb1e1211SMatthew G Knepley #undef __FUNCT__ 20cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexSetScale" 21cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 22cb1e1211SMatthew G Knepley { 23cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 24cb1e1211SMatthew G Knepley 25cb1e1211SMatthew G Knepley PetscFunctionBegin; 26cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 28cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 29cb1e1211SMatthew G Knepley } 30cb1e1211SMatthew G Knepley 31cb1e1211SMatthew G Knepley PETSC_STATIC_INLINE PetscInt epsilon(PetscInt i, PetscInt j, PetscInt k) 32cb1e1211SMatthew G Knepley { 33cb1e1211SMatthew G Knepley switch (i) { 34cb1e1211SMatthew G Knepley case 0: 35cb1e1211SMatthew G Knepley switch (j) { 36cb1e1211SMatthew G Knepley case 0: return 0; 37cb1e1211SMatthew G Knepley case 1: 38cb1e1211SMatthew G Knepley switch (k) { 39cb1e1211SMatthew G Knepley case 0: return 0; 40cb1e1211SMatthew G Knepley case 1: return 0; 41cb1e1211SMatthew G Knepley case 2: return 1; 42cb1e1211SMatthew G Knepley } 43cb1e1211SMatthew G Knepley case 2: 44cb1e1211SMatthew G Knepley switch (k) { 45cb1e1211SMatthew G Knepley case 0: return 0; 46cb1e1211SMatthew G Knepley case 1: return -1; 47cb1e1211SMatthew G Knepley case 2: return 0; 48cb1e1211SMatthew G Knepley } 49cb1e1211SMatthew G Knepley } 50cb1e1211SMatthew G Knepley case 1: 51cb1e1211SMatthew G Knepley switch (j) { 52cb1e1211SMatthew G Knepley case 0: 53cb1e1211SMatthew G Knepley switch (k) { 54cb1e1211SMatthew G Knepley case 0: return 0; 55cb1e1211SMatthew G Knepley case 1: return 0; 56cb1e1211SMatthew G Knepley case 2: return -1; 57cb1e1211SMatthew G Knepley } 58cb1e1211SMatthew G Knepley case 1: return 0; 59cb1e1211SMatthew G Knepley case 2: 60cb1e1211SMatthew G Knepley switch (k) { 61cb1e1211SMatthew G Knepley case 0: return 1; 62cb1e1211SMatthew G Knepley case 1: return 0; 63cb1e1211SMatthew G Knepley case 2: return 0; 64cb1e1211SMatthew G Knepley } 65cb1e1211SMatthew G Knepley } 66cb1e1211SMatthew G Knepley case 2: 67cb1e1211SMatthew G Knepley switch (j) { 68cb1e1211SMatthew G Knepley case 0: 69cb1e1211SMatthew G Knepley switch (k) { 70cb1e1211SMatthew G Knepley case 0: return 0; 71cb1e1211SMatthew G Knepley case 1: return 1; 72cb1e1211SMatthew G Knepley case 2: return 0; 73cb1e1211SMatthew G Knepley } 74cb1e1211SMatthew G Knepley case 1: 75cb1e1211SMatthew G Knepley switch (k) { 76cb1e1211SMatthew G Knepley case 0: return -1; 77cb1e1211SMatthew G Knepley case 1: return 0; 78cb1e1211SMatthew G Knepley case 2: return 0; 79cb1e1211SMatthew G Knepley } 80cb1e1211SMatthew G Knepley case 2: return 0; 81cb1e1211SMatthew G Knepley } 82cb1e1211SMatthew G Knepley } 83cb1e1211SMatthew G Knepley return 0; 84cb1e1211SMatthew G Knepley } 85cb1e1211SMatthew G Knepley 86cb1e1211SMatthew G Knepley #undef __FUNCT__ 87cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexCreateRigidBody" 88cb1e1211SMatthew G Knepley /*@C 89cb1e1211SMatthew G Knepley DMPlexCreateRigidBody - create rigid body modes from coordinates 90cb1e1211SMatthew G Knepley 91cb1e1211SMatthew G Knepley Collective on DM 92cb1e1211SMatthew G Knepley 93cb1e1211SMatthew G Knepley Input Arguments: 94cb1e1211SMatthew G Knepley + dm - the DM 95cb1e1211SMatthew G Knepley . section - the local section associated with the rigid field, or NULL for the default section 96cb1e1211SMatthew G Knepley - globalSection - the global section associated with the rigid field, or NULL for the default section 97cb1e1211SMatthew G Knepley 98cb1e1211SMatthew G Knepley Output Argument: 99cb1e1211SMatthew G Knepley . sp - the null space 100cb1e1211SMatthew G Knepley 101cb1e1211SMatthew G Knepley Note: This is necessary to take account of Dirichlet conditions on the displacements 102cb1e1211SMatthew G Knepley 103cb1e1211SMatthew G Knepley Level: advanced 104cb1e1211SMatthew G Knepley 105cb1e1211SMatthew G Knepley .seealso: MatNullSpaceCreate() 106cb1e1211SMatthew G Knepley @*/ 107cb1e1211SMatthew G Knepley PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscSection section, PetscSection globalSection, MatNullSpace *sp) 108cb1e1211SMatthew G Knepley { 109cb1e1211SMatthew G Knepley MPI_Comm comm; 110cb1e1211SMatthew G Knepley Vec coordinates, localMode, mode[6]; 111cb1e1211SMatthew G Knepley PetscSection coordSection; 112cb1e1211SMatthew G Knepley PetscScalar *coords; 113cb1e1211SMatthew G Knepley PetscInt dim, vStart, vEnd, v, n, m, d, i, j; 114cb1e1211SMatthew G Knepley PetscErrorCode ierr; 115cb1e1211SMatthew G Knepley 116cb1e1211SMatthew G Knepley PetscFunctionBegin; 117cb1e1211SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 118c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 119cb1e1211SMatthew G Knepley if (dim == 1) { 120cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr); 121cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 122cb1e1211SMatthew G Knepley } 123cb1e1211SMatthew G Knepley if (!section) {ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr);} 124cb1e1211SMatthew G Knepley if (!globalSection) {ierr = DMGetDefaultGlobalSection(dm, &globalSection);CHKERRQ(ierr);} 125cb1e1211SMatthew G Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 126cb1e1211SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 12769d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 128cb1e1211SMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 129cb1e1211SMatthew G Knepley m = (dim*(dim+1))/2; 130cb1e1211SMatthew G Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 131cb1e1211SMatthew G Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 132cb1e1211SMatthew G Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 133cb1e1211SMatthew G Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 134cb1e1211SMatthew G Knepley /* Assume P1 */ 135cb1e1211SMatthew G Knepley ierr = DMGetLocalVector(dm, &localMode);CHKERRQ(ierr); 136cb1e1211SMatthew G Knepley for (d = 0; d < dim; ++d) { 137cb1e1211SMatthew G Knepley PetscScalar values[3] = {0.0, 0.0, 0.0}; 138cb1e1211SMatthew G Knepley 139cb1e1211SMatthew G Knepley values[d] = 1.0; 140cb1e1211SMatthew G Knepley ierr = VecSet(localMode, 0.0);CHKERRQ(ierr); 141cb1e1211SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 142cb1e1211SMatthew G Knepley ierr = DMPlexVecSetClosure(dm, section, localMode, v, values, INSERT_VALUES);CHKERRQ(ierr); 143cb1e1211SMatthew G Knepley } 144cb1e1211SMatthew G Knepley ierr = DMLocalToGlobalBegin(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 145cb1e1211SMatthew G Knepley ierr = DMLocalToGlobalEnd(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 146cb1e1211SMatthew G Knepley } 147cb1e1211SMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 148cb1e1211SMatthew G Knepley for (d = dim; d < dim*(dim+1)/2; ++d) { 149cb1e1211SMatthew G Knepley PetscInt i, j, k = dim > 2 ? d - dim : d; 150cb1e1211SMatthew G Knepley 151cb1e1211SMatthew G Knepley ierr = VecSet(localMode, 0.0);CHKERRQ(ierr); 152cb1e1211SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 153cb1e1211SMatthew G Knepley PetscScalar values[3] = {0.0, 0.0, 0.0}; 154cb1e1211SMatthew G Knepley PetscInt off; 155cb1e1211SMatthew G Knepley 156cb1e1211SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, v, &off);CHKERRQ(ierr); 157cb1e1211SMatthew G Knepley for (i = 0; i < dim; ++i) { 158cb1e1211SMatthew G Knepley for (j = 0; j < dim; ++j) { 159cb1e1211SMatthew G Knepley values[j] += epsilon(i, j, k)*PetscRealPart(coords[off+i]); 160cb1e1211SMatthew G Knepley } 161cb1e1211SMatthew G Knepley } 162cb1e1211SMatthew G Knepley ierr = DMPlexVecSetClosure(dm, section, localMode, v, values, INSERT_VALUES);CHKERRQ(ierr); 163cb1e1211SMatthew G Knepley } 164cb1e1211SMatthew G Knepley ierr = DMLocalToGlobalBegin(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 165cb1e1211SMatthew G Knepley ierr = DMLocalToGlobalEnd(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 166cb1e1211SMatthew G Knepley } 167cb1e1211SMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 168cb1e1211SMatthew G Knepley ierr = DMRestoreLocalVector(dm, &localMode);CHKERRQ(ierr); 169cb1e1211SMatthew G Knepley for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 170cb1e1211SMatthew G Knepley /* Orthonormalize system */ 171cb1e1211SMatthew G Knepley for (i = dim; i < m; ++i) { 172cb1e1211SMatthew G Knepley PetscScalar dots[6]; 173cb1e1211SMatthew G Knepley 174cb1e1211SMatthew G Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 175cb1e1211SMatthew G Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 176cb1e1211SMatthew G Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 177cb1e1211SMatthew G Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 178cb1e1211SMatthew G Knepley } 179cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr); 180cb1e1211SMatthew G Knepley for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 181cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 182cb1e1211SMatthew G Knepley } 183cb1e1211SMatthew G Knepley 184cb1e1211SMatthew G Knepley #undef __FUNCT__ 185b29cfa1cSToby Isaac #define __FUNCT__ "DMPlexSetMaxProjectionHeight" 186b29cfa1cSToby Isaac /*@ 187b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 188b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 189b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 190b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 191b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 192b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 193b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 194b29cfa1cSToby Isaac 195b29cfa1cSToby Isaac Input Parameters: 196b29cfa1cSToby Isaac + dm - the DMPlex object 197b29cfa1cSToby Isaac - height - the maximum projection height >= 0 198b29cfa1cSToby Isaac 199b29cfa1cSToby Isaac Level: advanced 200b29cfa1cSToby Isaac 201048b7b1eSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMPlexProjectFunctionLocal(), DMPlexProjectFunctionLabelLocal() 202b29cfa1cSToby Isaac @*/ 203b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 204b29cfa1cSToby Isaac { 205b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 206b29cfa1cSToby Isaac 207b29cfa1cSToby Isaac PetscFunctionBegin; 208b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 209b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 210b29cfa1cSToby Isaac PetscFunctionReturn(0); 211b29cfa1cSToby Isaac } 212b29cfa1cSToby Isaac 213b29cfa1cSToby Isaac #undef __FUNCT__ 214b29cfa1cSToby Isaac #define __FUNCT__ "DMPlexGetMaxProjectionHeight" 215b29cfa1cSToby Isaac /*@ 216b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 217b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 218b29cfa1cSToby Isaac 219b29cfa1cSToby Isaac Input Parameters: 220b29cfa1cSToby Isaac . dm - the DMPlex object 221b29cfa1cSToby Isaac 222b29cfa1cSToby Isaac Output Parameters: 223b29cfa1cSToby Isaac . height - the maximum projection height 224b29cfa1cSToby Isaac 225b29cfa1cSToby Isaac Level: intermediate 226b29cfa1cSToby Isaac 227048b7b1eSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMPlexProjectFunctionLocal(), DMPlexProjectFunctionLabelLocal() 228b29cfa1cSToby Isaac @*/ 229b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 230b29cfa1cSToby Isaac { 231b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 232b29cfa1cSToby Isaac 233b29cfa1cSToby Isaac PetscFunctionBegin; 234b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 235b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 236b29cfa1cSToby Isaac PetscFunctionReturn(0); 237b29cfa1cSToby Isaac } 238b29cfa1cSToby Isaac 239b29cfa1cSToby Isaac #undef __FUNCT__ 240a18a7fb9SMatthew G. Knepley #define __FUNCT__ "DMPlexProjectFunctionLabelLocal" 241bf3434eeSMatthew G. Knepley PetscErrorCode DMPlexProjectFunctionLabelLocal(DM dm, DMLabel label, PetscInt numIds, const PetscInt ids[], void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 242a18a7fb9SMatthew G. Knepley { 243bf3434eeSMatthew G. Knepley PetscFE fe; 2447d1dd11eSToby Isaac PetscDualSpace *sp, *cellsp; 245a18a7fb9SMatthew G. Knepley PetscSection section; 246a18a7fb9SMatthew G. Knepley PetscScalar *values; 247ad96f515SMatthew G. Knepley PetscBool *fieldActive; 248ee2838f6SToby Isaac PetscInt numFields, numComp, dim, dimEmbed, spDim, totDim, numValues, pStart, pEnd, f, d, v, i, comp, maxHeight, h; 249a18a7fb9SMatthew G. Knepley PetscErrorCode ierr; 250a18a7fb9SMatthew G. Knepley 251a18a7fb9SMatthew G. Knepley PetscFunctionBegin; 252c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2537a1a1bd4SToby Isaac ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 254a18a7fb9SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 255a18a7fb9SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 256e1d0b1adSMatthew G. Knepley ierr = PetscMalloc1(numFields,&sp);CHKERRQ(ierr); 2577d1dd11eSToby Isaac ierr = DMPlexGetMaxProjectionHeight(dm,&maxHeight);CHKERRQ(ierr); 2587d1dd11eSToby Isaac if (maxHeight < 0 || maxHeight > dim) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"maximum projection height %d not in [0, %d)\n", maxHeight,dim);} 2597d1dd11eSToby Isaac if (maxHeight > 0) { 2607d1dd11eSToby Isaac ierr = PetscMalloc1(numFields,&cellsp);CHKERRQ(ierr); 2617d1dd11eSToby Isaac } 262048b7b1eSToby Isaac else { 263048b7b1eSToby Isaac cellsp = sp; 264048b7b1eSToby Isaac } 2657d1dd11eSToby Isaac for (h = 0; h <= maxHeight; h++) { 2667d1dd11eSToby Isaac ierr = DMPlexGetHeightStratum(dm, h, &pStart, &pEnd);CHKERRQ(ierr); 2677d1dd11eSToby Isaac if (pEnd <= pStart) continue; 2687d1dd11eSToby Isaac totDim = 0; 269a18a7fb9SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 270bf3434eeSMatthew G. Knepley ierr = DMGetField(dm, f, (PetscObject *) &fe);CHKERRQ(ierr); 2717d1dd11eSToby Isaac if (!h) { 272ee2838f6SToby Isaac ierr = PetscFEGetDualSpace(fe, &cellsp[f]);CHKERRQ(ierr); 2737d1dd11eSToby Isaac sp[f] = cellsp[f]; 2747d1dd11eSToby Isaac } 2757d1dd11eSToby Isaac else { 2767d1dd11eSToby Isaac ierr = PetscDualSpaceGetHeightSubspace(cellsp[f], h, &sp[f]);CHKERRQ(ierr); 2777d1dd11eSToby Isaac if (!sp[f]) continue; 2787d1dd11eSToby Isaac } 279bf3434eeSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &numComp);CHKERRQ(ierr); 280a18a7fb9SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 281a18a7fb9SMatthew G. Knepley totDim += spDim*numComp; 282a18a7fb9SMatthew G. Knepley } 2837d1dd11eSToby Isaac ierr = DMPlexVecGetClosure(dm, section, localX, pStart, &numValues, NULL);CHKERRQ(ierr); 2847d1dd11eSToby Isaac if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section point closure size %d != dual space dimension %d", numValues, totDim); 285d374af2bSToby Isaac if (!totDim) continue; 286a18a7fb9SMatthew G. Knepley ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 287ad96f515SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFields, PETSC_BOOL, &fieldActive);CHKERRQ(ierr); 288ee2838f6SToby Isaac for (f = 0; f < numFields; ++f) fieldActive[f] = (funcs[f] && sp[f]) ? PETSC_TRUE : PETSC_FALSE; 289a18a7fb9SMatthew G. Knepley for (i = 0; i < numIds; ++i) { 290a18a7fb9SMatthew G. Knepley IS pointIS; 291a18a7fb9SMatthew G. Knepley const PetscInt *points; 292a18a7fb9SMatthew G. Knepley PetscInt n, p; 293a18a7fb9SMatthew G. Knepley 294a18a7fb9SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &pointIS);CHKERRQ(ierr); 295a18a7fb9SMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &n);CHKERRQ(ierr); 296a18a7fb9SMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 297a18a7fb9SMatthew G. Knepley for (p = 0; p < n; ++p) { 298a18a7fb9SMatthew G. Knepley const PetscInt point = points[p]; 299e1d0b1adSMatthew G. Knepley PetscFECellGeom geom; 300a18a7fb9SMatthew G. Knepley 3017d1dd11eSToby Isaac if ((point < pStart) || (point >= pEnd)) continue; 302e1d0b1adSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, point, NULL, geom.v0, geom.J, NULL, &geom.detJ);CHKERRQ(ierr); 303ee2838f6SToby Isaac geom.dim = dim - h; 3047a1a1bd4SToby Isaac geom.dimEmbed = dimEmbed; 305a18a7fb9SMatthew G. Knepley for (f = 0, v = 0; f < numFields; ++f) { 306a18a7fb9SMatthew G. Knepley void * const ctx = ctxs ? ctxs[f] : NULL; 307bf3434eeSMatthew G. Knepley 3087d1dd11eSToby Isaac if (!sp[f]) continue; 309bf3434eeSMatthew G. Knepley ierr = DMGetField(dm, f, (PetscObject *) &fe);CHKERRQ(ierr); 310bf3434eeSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &numComp);CHKERRQ(ierr); 311a18a7fb9SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 312a18a7fb9SMatthew G. Knepley for (d = 0; d < spDim; ++d) { 313a18a7fb9SMatthew G. Knepley if (funcs[f]) { 314e1d0b1adSMatthew G. Knepley ierr = PetscDualSpaceApply(sp[f], d, &geom, numComp, funcs[f], ctx, &values[v]);CHKERRQ(ierr); 315a18a7fb9SMatthew G. Knepley } else { 316a18a7fb9SMatthew G. Knepley for (comp = 0; comp < numComp; ++comp) values[v+comp] = 0.0; 317a18a7fb9SMatthew G. Knepley } 318a18a7fb9SMatthew G. Knepley v += numComp; 319a18a7fb9SMatthew G. Knepley } 320a18a7fb9SMatthew G. Knepley } 321ad96f515SMatthew G. Knepley ierr = DMPlexVecSetFieldClosure_Internal(dm, section, localX, fieldActive, point, values, mode);CHKERRQ(ierr); 322a18a7fb9SMatthew G. Knepley } 323a18a7fb9SMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 324a18a7fb9SMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 325a18a7fb9SMatthew G. Knepley } 3267d1dd11eSToby Isaac if (h) { 3277d1dd11eSToby Isaac for (f = 0; f < numFields; ++f) {ierr = PetscDualSpaceDestroy(&sp[f]);CHKERRQ(ierr);} 3287d1dd11eSToby Isaac } 3297d1dd11eSToby Isaac } 330a18a7fb9SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 331ad96f515SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numFields, PETSC_BOOL, &fieldActive);CHKERRQ(ierr); 332e1d0b1adSMatthew G. Knepley ierr = PetscFree(sp);CHKERRQ(ierr); 3337d1dd11eSToby Isaac if (maxHeight > 0) { 3347d1dd11eSToby Isaac ierr = PetscFree(cellsp);CHKERRQ(ierr); 3357d1dd11eSToby Isaac } 336a18a7fb9SMatthew G. Knepley PetscFunctionReturn(0); 337a18a7fb9SMatthew G. Knepley } 338a18a7fb9SMatthew G. Knepley 339a18a7fb9SMatthew G. Knepley #undef __FUNCT__ 340cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexProjectFunctionLocal" 3410f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexProjectFunctionLocal(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 342cb1e1211SMatthew G Knepley { 3437d1dd11eSToby Isaac PetscDualSpace *sp, *cellsp; 34415496722SMatthew G. Knepley PetscInt *numComp; 34572f94c41SMatthew G. Knepley PetscSection section; 34672f94c41SMatthew G. Knepley PetscScalar *values; 34731383a9bSToby Isaac PetscInt numFields, dim, dimEmbed, spDim, totDim, numValues, pStart, pEnd, p, f, d, v, comp, h, maxHeight; 348cb1e1211SMatthew G Knepley PetscErrorCode ierr; 349cb1e1211SMatthew G Knepley 350cb1e1211SMatthew G Knepley PetscFunctionBegin; 351cb1e1211SMatthew G Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 35272f94c41SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 35315496722SMatthew G. Knepley ierr = PetscMalloc2(numFields, &sp, numFields, &numComp);CHKERRQ(ierr); 3547d1dd11eSToby Isaac ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 355ee2838f6SToby Isaac ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 3567d1dd11eSToby Isaac ierr = DMPlexGetMaxProjectionHeight(dm,&maxHeight);CHKERRQ(ierr); 3577d1dd11eSToby Isaac if (maxHeight < 0 || maxHeight > dim) {SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"maximum projection height %d not in [0, %d)\n", maxHeight,dim);} 3587d1dd11eSToby Isaac if (maxHeight > 0) { 3597d1dd11eSToby Isaac ierr = PetscMalloc1(numFields,&cellsp);CHKERRQ(ierr); 3607d1dd11eSToby Isaac } 361048b7b1eSToby Isaac else { 362048b7b1eSToby Isaac cellsp = sp; 363048b7b1eSToby Isaac } 3647d1dd11eSToby Isaac for (h = 0; h <= maxHeight; h++) { 3657d1dd11eSToby Isaac ierr = DMPlexGetHeightStratum(dm, h, &pStart, &pEnd);CHKERRQ(ierr); 366048b7b1eSToby Isaac if (pEnd <= pStart) continue; 3677d1dd11eSToby Isaac totDim = 0; 36872f94c41SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 36915496722SMatthew G. Knepley PetscObject obj; 37015496722SMatthew G. Knepley PetscClassId id; 3710f2d7e86SMatthew G. Knepley 37215496722SMatthew G. Knepley ierr = DMGetField(dm, f, &obj);CHKERRQ(ierr); 37315496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 37415496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 37515496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 37615496722SMatthew G. Knepley 37715496722SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &numComp[f]);CHKERRQ(ierr); 3787d1dd11eSToby Isaac if (!h) { 3797d1dd11eSToby Isaac ierr = PetscFEGetDualSpace(fe, &cellsp[f]);CHKERRQ(ierr); 3807d1dd11eSToby Isaac sp[f] = cellsp[f]; 38115496722SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) sp[f]);CHKERRQ(ierr); 3827d1dd11eSToby Isaac } 3837d1dd11eSToby Isaac else { 3847d1dd11eSToby Isaac ierr = PetscDualSpaceGetHeightSubspace(cellsp[f], h, &sp[f]);CHKERRQ(ierr); 3857d1dd11eSToby Isaac if (!sp[f]) { 3867d1dd11eSToby Isaac continue; 3877d1dd11eSToby Isaac } 3887d1dd11eSToby Isaac } 38915496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 39015496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 39115496722SMatthew G. Knepley PetscQuadrature q; 39215496722SMatthew G. Knepley 393ee2838f6SToby Isaac if (h) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP, "Projection height > 0 not supported for finite volume"); 39415496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &numComp[f]);CHKERRQ(ierr); 39515496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &q);CHKERRQ(ierr); 39615496722SMatthew G. Knepley ierr = PetscDualSpaceCreate(PetscObjectComm((PetscObject) fv), &sp[f]);CHKERRQ(ierr); 39715496722SMatthew G. Knepley ierr = PetscDualSpaceSetDM(sp[f], dm);CHKERRQ(ierr); 39815496722SMatthew G. Knepley ierr = PetscDualSpaceSetType(sp[f], PETSCDUALSPACESIMPLE);CHKERRQ(ierr); 39915496722SMatthew G. Knepley ierr = PetscDualSpaceSimpleSetDimension(sp[f], 1);CHKERRQ(ierr); 40015496722SMatthew G. Knepley ierr = PetscDualSpaceSimpleSetFunctional(sp[f], 0, q);CHKERRQ(ierr); 40115496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 40272f94c41SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 40315496722SMatthew G. Knepley totDim += spDim*numComp[f]; 404cb1e1211SMatthew G Knepley } 4057d1dd11eSToby Isaac ierr = DMPlexVecGetClosure(dm, section, localX, pStart, &numValues, NULL);CHKERRQ(ierr); 4067d1dd11eSToby Isaac if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section point closure size %d != dual space dimension %d", numValues, totDim); 407d374af2bSToby Isaac if (!totDim) continue; 40872f94c41SMatthew G. Knepley ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 4097d1dd11eSToby Isaac for (p = pStart; p < pEnd; ++p) { 410e1d0b1adSMatthew G. Knepley PetscFECellGeom geom; 411cb1e1211SMatthew G Knepley 41231383a9bSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, p, NULL, geom.v0, geom.J, NULL, &geom.detJ);CHKERRQ(ierr); 413910c25dcSToby Isaac geom.dim = dim - h; 4147a1a1bd4SToby Isaac geom.dimEmbed = dimEmbed; 41572f94c41SMatthew G. Knepley for (f = 0, v = 0; f < numFields; ++f) { 416c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[f] : NULL; 4170f2d7e86SMatthew G. Knepley 4187d1dd11eSToby Isaac if (!sp[f]) continue; 41972f94c41SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 42072f94c41SMatthew G. Knepley for (d = 0; d < spDim; ++d) { 421120386c5SMatthew G. Knepley if (funcs[f]) { 422e1d0b1adSMatthew G. Knepley ierr = PetscDualSpaceApply(sp[f], d, &geom, numComp[f], funcs[f], ctx, &values[v]);CHKERRQ(ierr); 423120386c5SMatthew G. Knepley } else { 42415496722SMatthew G. Knepley for (comp = 0; comp < numComp[f]; ++comp) values[v+comp] = 0.0; 425120386c5SMatthew G. Knepley } 42615496722SMatthew G. Knepley v += numComp[f]; 427cb1e1211SMatthew G Knepley } 428cb1e1211SMatthew G Knepley } 4297d1dd11eSToby Isaac ierr = DMPlexVecSetClosure(dm, section, localX, p, values, mode);CHKERRQ(ierr); 430cb1e1211SMatthew G Knepley } 43172f94c41SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 432ee2838f6SToby Isaac if (h || !maxHeight) { 4337d1dd11eSToby Isaac for (f = 0; f < numFields; f++) {ierr = PetscDualSpaceDestroy(&sp[f]);CHKERRQ(ierr);} 4347d1dd11eSToby Isaac } 4357d1dd11eSToby Isaac } 43615496722SMatthew G. Knepley ierr = PetscFree2(sp, numComp);CHKERRQ(ierr); 4377d1dd11eSToby Isaac if (maxHeight > 0) { 438ee2838f6SToby Isaac for (f = 0; f < numFields; f++) {ierr = PetscDualSpaceDestroy(&cellsp[f]);CHKERRQ(ierr);} 4397d1dd11eSToby Isaac ierr = PetscFree(cellsp);CHKERRQ(ierr); 4407d1dd11eSToby Isaac } 441cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 442cb1e1211SMatthew G Knepley } 443cb1e1211SMatthew G Knepley 444cb1e1211SMatthew G Knepley #undef __FUNCT__ 445*8040c1f3SToby Isaac #define __FUNCT__ "DMPlexProjectFunction" 446*8040c1f3SToby Isaac /*@C 447*8040c1f3SToby Isaac DMPlexProjectFunction - This projects the given function into the function space provided. 448*8040c1f3SToby Isaac 449*8040c1f3SToby Isaac Input Parameters: 450*8040c1f3SToby Isaac + dm - The DM 451*8040c1f3SToby Isaac . funcs - The coordinate functions to evaluate, one per field 452*8040c1f3SToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 453*8040c1f3SToby Isaac - mode - The insertion mode for values 454*8040c1f3SToby Isaac 455*8040c1f3SToby Isaac Output Parameter: 456*8040c1f3SToby Isaac . X - vector 457*8040c1f3SToby Isaac 458*8040c1f3SToby Isaac Level: developer 459*8040c1f3SToby Isaac 460*8040c1f3SToby Isaac .seealso: DMPlexComputeL2Diff() 461*8040c1f3SToby Isaac @*/ 462*8040c1f3SToby Isaac PetscErrorCode DMPlexProjectFunction(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X) 463*8040c1f3SToby Isaac { 464*8040c1f3SToby Isaac Vec localX; 465*8040c1f3SToby Isaac PetscErrorCode ierr; 466*8040c1f3SToby Isaac 467*8040c1f3SToby Isaac PetscFunctionBegin; 468*8040c1f3SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 469*8040c1f3SToby Isaac ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 470*8040c1f3SToby Isaac ierr = DMPlexProjectFunctionLocal(dm, funcs, ctxs, mode, localX);CHKERRQ(ierr); 471*8040c1f3SToby Isaac ierr = DMLocalToGlobalBegin(dm, localX, mode, X);CHKERRQ(ierr); 472*8040c1f3SToby Isaac ierr = DMLocalToGlobalEnd(dm, localX, mode, X);CHKERRQ(ierr); 473*8040c1f3SToby Isaac ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 474*8040c1f3SToby Isaac PetscFunctionReturn(0); 475*8040c1f3SToby Isaac } 476*8040c1f3SToby Isaac 477*8040c1f3SToby Isaac #undef __FUNCT__ 4780f2d7e86SMatthew G. Knepley #define __FUNCT__ "DMPlexProjectFieldLocal" 4793bc3b0a0SMatthew G. Knepley PetscErrorCode DMPlexProjectFieldLocal(DM dm, Vec localU, void (**funcs)(const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscReal [], PetscScalar []), InsertMode mode, Vec localX) 4800f2d7e86SMatthew G. Knepley { 4810f2d7e86SMatthew G. Knepley DM dmAux; 4822764a2aaSMatthew G. Knepley PetscDS prob, probAux; 4830f2d7e86SMatthew G. Knepley Vec A; 484326413afSMatthew G. Knepley PetscSection section, sectionAux; 485326413afSMatthew G. Knepley PetscScalar *values, *u, *u_x, *a, *a_x; 4860f2d7e86SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ, **basisField, **basisFieldDer, **basisFieldAux, **basisFieldDerAux; 487048b7b1eSToby Isaac PetscInt Nf, dim, spDim, totDim, numValues, cStart, cEnd, c, f, d, v, comp, maxHeight; 4880f2d7e86SMatthew G. Knepley PetscErrorCode ierr; 4890f2d7e86SMatthew G. Knepley 4900f2d7e86SMatthew G. Knepley PetscFunctionBegin; 491048b7b1eSToby Isaac ierr = DMPlexGetMaxProjectionHeight(dm,&maxHeight);CHKERRQ(ierr); 492048b7b1eSToby Isaac if (maxHeight > 0) {SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Field projection for height > 0 not supported yet");} 4932764a2aaSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 494c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 4950f2d7e86SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 4960f2d7e86SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 4970f2d7e86SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 4982764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 4992764a2aaSMatthew G. Knepley ierr = PetscDSGetTabulation(prob, &basisField, &basisFieldDer);CHKERRQ(ierr); 5002764a2aaSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(prob, &u, NULL, &u_x);CHKERRQ(ierr); 5012764a2aaSMatthew G. Knepley ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr); 5020f2d7e86SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 5030f2d7e86SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 5040f2d7e86SMatthew G. Knepley if (dmAux) { 5052764a2aaSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 506326413afSMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 5072764a2aaSMatthew G. Knepley ierr = PetscDSGetTabulation(prob, &basisFieldAux, &basisFieldDerAux);CHKERRQ(ierr); 5082764a2aaSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(probAux, &a, NULL, &a_x);CHKERRQ(ierr); 5090f2d7e86SMatthew G. Knepley } 510d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, localU, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 5110f2d7e86SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, cStart, &numValues, NULL);CHKERRQ(ierr); 5120f2d7e86SMatthew G. Knepley if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section cell closure size %d != dual space dimension %d", numValues, totDim); 5130f2d7e86SMatthew G. Knepley ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 5140f2d7e86SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 5150f2d7e86SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 516326413afSMatthew G. Knepley PetscScalar *coefficients = NULL, *coefficientsAux = NULL; 517326413afSMatthew G. Knepley 5188e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 519326413afSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localU, c, NULL, &coefficients);CHKERRQ(ierr); 520326413afSMatthew G. Knepley if (dmAux) {ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &coefficientsAux);CHKERRQ(ierr);} 5210f2d7e86SMatthew G. Knepley for (f = 0, v = 0; f < Nf; ++f) { 5223113607cSMatthew G. Knepley PetscFE fe; 5233113607cSMatthew G. Knepley PetscDualSpace sp; 5243113607cSMatthew G. Knepley PetscInt Ncf; 5253113607cSMatthew G. Knepley 5262764a2aaSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr); 5273113607cSMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &sp);CHKERRQ(ierr); 5283113607cSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Ncf);CHKERRQ(ierr); 5293113607cSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp, &spDim);CHKERRQ(ierr); 5300f2d7e86SMatthew G. Knepley for (d = 0; d < spDim; ++d) { 5310f2d7e86SMatthew G. Knepley PetscQuadrature quad; 5320f2d7e86SMatthew G. Knepley const PetscReal *points, *weights; 5330f2d7e86SMatthew G. Knepley PetscInt numPoints, q; 5340f2d7e86SMatthew G. Knepley 5350f2d7e86SMatthew G. Knepley if (funcs[f]) { 5363113607cSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(sp, d, &quad);CHKERRQ(ierr); 5370f2d7e86SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numPoints, &points, &weights);CHKERRQ(ierr); 5383113607cSMatthew G. Knepley ierr = PetscFEGetTabulation(fe, numPoints, points, &basisField[f], &basisFieldDer[f], NULL);CHKERRQ(ierr); 5390f2d7e86SMatthew G. Knepley for (q = 0; q < numPoints; ++q) { 5400f2d7e86SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &points[q*dim], x); 541326413afSMatthew G. Knepley ierr = EvaluateFieldJets(prob, PETSC_FALSE, q, invJ, coefficients, NULL, u, u_x, NULL);CHKERRQ(ierr); 542326413afSMatthew G. Knepley ierr = EvaluateFieldJets(probAux, PETSC_FALSE, q, invJ, coefficientsAux, NULL, a, a_x, NULL);CHKERRQ(ierr); 5433bc3b0a0SMatthew G. Knepley (*funcs[f])(u, NULL, u_x, a, NULL, a_x, x, &values[v]); 5440f2d7e86SMatthew G. Knepley } 5453113607cSMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, numPoints, points, &basisField[f], &basisFieldDer[f], NULL);CHKERRQ(ierr); 5460f2d7e86SMatthew G. Knepley } else { 5470f2d7e86SMatthew G. Knepley for (comp = 0; comp < Ncf; ++comp) values[v+comp] = 0.0; 5480f2d7e86SMatthew G. Knepley } 5490f2d7e86SMatthew G. Knepley v += Ncf; 5500f2d7e86SMatthew G. Knepley } 5510f2d7e86SMatthew G. Knepley } 552326413afSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, localU, c, NULL, &coefficients);CHKERRQ(ierr); 553326413afSMatthew G. Knepley if (dmAux) {ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &coefficientsAux);CHKERRQ(ierr);} 5540f2d7e86SMatthew G. Knepley ierr = DMPlexVecSetClosure(dm, section, localX, c, values, mode);CHKERRQ(ierr); 5550f2d7e86SMatthew G. Knepley } 5560f2d7e86SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 5570f2d7e86SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 5580f2d7e86SMatthew G. Knepley PetscFunctionReturn(0); 5590f2d7e86SMatthew G. Knepley } 5600f2d7e86SMatthew G. Knepley 5610f2d7e86SMatthew G. Knepley #undef __FUNCT__ 562d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FEM_Internal" 563d7ddef95SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FEM_Internal(DM dm, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(const PetscReal[], PetscScalar *, void *), void *ctx, Vec locX) 5640f2d7e86SMatthew G. Knepley { 56555f2e967SMatthew G. Knepley void (**funcs)(const PetscReal x[], PetscScalar *u, void *ctx); 56655f2e967SMatthew G. Knepley void **ctxs; 567d7ddef95SMatthew G. Knepley PetscInt numFields; 568cb1e1211SMatthew G Knepley PetscErrorCode ierr; 569cb1e1211SMatthew G Knepley 57072f94c41SMatthew G. Knepley PetscFunctionBegin; 571d7ddef95SMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 572d7ddef95SMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 573d7ddef95SMatthew G. Knepley funcs[field] = func; 574d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 575d7ddef95SMatthew G. Knepley ierr = DMPlexProjectFunctionLabelLocal(dm, label, numids, ids, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 576d7ddef95SMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 577cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 578cb1e1211SMatthew G Knepley } 57955f2e967SMatthew G. Knepley 58055f2e967SMatthew G. Knepley #undef __FUNCT__ 581d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FVM_Internal" 582d7ddef95SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FVM_Internal(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, 583d7ddef95SMatthew G. Knepley PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 58455f2e967SMatthew G. Knepley { 585d7ddef95SMatthew G. Knepley PetscFV fv; 586d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 587d7ddef95SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *grad; 588d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 589d7ddef95SMatthew G. Knepley PetscInt dim, fStart, fEnd, pdim, i; 590d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 591d7ddef95SMatthew G. Knepley 592d7ddef95SMatthew G. Knepley PetscFunctionBegin; 593d7ddef95SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 594d7ddef95SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 595d7ddef95SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fv);CHKERRQ(ierr); 596d7ddef95SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 597d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 598d7ddef95SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 599d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 600d7ddef95SMatthew G. Knepley if (Grad) { 601d7ddef95SMatthew G. Knepley ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr); 602d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr); 603d7ddef95SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 604d7ddef95SMatthew G. Knepley ierr = DMGetWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 605d7ddef95SMatthew G. Knepley } 606d7ddef95SMatthew G. Knepley ierr = VecGetArray(locX, &x);CHKERRQ(ierr); 607d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 608d7ddef95SMatthew G. Knepley IS faceIS; 609d7ddef95SMatthew G. Knepley const PetscInt *faces; 610d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 611d7ddef95SMatthew G. Knepley 612d7ddef95SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr); 613d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 614d7ddef95SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 615d7ddef95SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 616d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 617d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 618d7ddef95SMatthew G. Knepley const PetscFVFaceGeom *fg; 619d7ddef95SMatthew G. Knepley 620d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 621d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 622d7ddef95SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 623d7ddef95SMatthew G. Knepley if (Grad) { 624d7ddef95SMatthew G. Knepley const PetscFVCellGeom *cg; 625d7ddef95SMatthew G. Knepley const PetscScalar *cx, *cgrad; 626d7ddef95SMatthew G. Knepley PetscScalar *xG; 627d7ddef95SMatthew G. Knepley PetscReal dx[3]; 628d7ddef95SMatthew G. Knepley PetscInt d; 629d7ddef95SMatthew G. Knepley 630d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr); 631d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr); 632d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr); 633d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRef(dm, cells[1], x, &xG);CHKERRQ(ierr); 634d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 635d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 636d7ddef95SMatthew G. Knepley ierr = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx);CHKERRQ(ierr); 637d7ddef95SMatthew G. Knepley } else { 638d7ddef95SMatthew G. Knepley const PetscScalar *xI; 639d7ddef95SMatthew G. Knepley PetscScalar *xG; 640d7ddef95SMatthew G. Knepley 641d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr); 642d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRef(dm, cells[1], x, &xG);CHKERRQ(ierr); 643d7ddef95SMatthew G. Knepley ierr = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);CHKERRQ(ierr); 644d7ddef95SMatthew G. Knepley } 645d7ddef95SMatthew G. Knepley } 646d7ddef95SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 647d7ddef95SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 648d7ddef95SMatthew G. Knepley } 649d7ddef95SMatthew G. Knepley ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr); 650d7ddef95SMatthew G. Knepley if (Grad) { 651d7ddef95SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 652d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr); 653d7ddef95SMatthew G. Knepley } 654d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 655d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 656d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 657d7ddef95SMatthew G. Knepley } 658d7ddef95SMatthew G. Knepley 659d7ddef95SMatthew G. Knepley #undef __FUNCT__ 660d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues" 661d7ddef95SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues(DM dm, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 662d7ddef95SMatthew G. Knepley { 663d7ddef95SMatthew G. Knepley PetscInt numBd, b; 66455f2e967SMatthew G. Knepley PetscErrorCode ierr; 66555f2e967SMatthew G. Knepley 66655f2e967SMatthew G. Knepley PetscFunctionBegin; 66755f2e967SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 668d7ddef95SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 2); 669d7ddef95SMatthew G. Knepley if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);} 670d7ddef95SMatthew G. Knepley if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);} 671d7ddef95SMatthew G. Knepley if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);} 67255f2e967SMatthew G. Knepley ierr = DMPlexGetNumBoundary(dm, &numBd);CHKERRQ(ierr); 67355f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 67455f2e967SMatthew G. Knepley PetscBool isEssential; 675d7ddef95SMatthew G. Knepley const char *labelname; 676d7ddef95SMatthew G. Knepley DMLabel label; 677d7ddef95SMatthew G. Knepley PetscInt field; 678d7ddef95SMatthew G. Knepley PetscObject obj; 679d7ddef95SMatthew G. Knepley PetscClassId id; 68055f2e967SMatthew G. Knepley void (*func)(); 681d7ddef95SMatthew G. Knepley PetscInt numids; 682d7ddef95SMatthew G. Knepley const PetscInt *ids; 68355f2e967SMatthew G. Knepley void *ctx; 68455f2e967SMatthew G. Knepley 68563d5297fSMatthew G. Knepley ierr = DMPlexGetBoundary(dm, b, &isEssential, NULL, &labelname, &field, &func, &numids, &ids, &ctx);CHKERRQ(ierr); 686d7ddef95SMatthew G. Knepley if (!isEssential) continue; 68763d5297fSMatthew G. Knepley ierr = DMPlexGetLabel(dm, labelname, &label);CHKERRQ(ierr); 688d7ddef95SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 689d7ddef95SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 690d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 691d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FEM_Internal(dm, field, label, numids, ids, (void (*)(const PetscReal[], PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr); 692d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 693d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FVM_Internal(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, 694d7ddef95SMatthew G. Knepley field, label, numids, ids, (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr); 695d7ddef95SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 69655f2e967SMatthew G. Knepley } 69755f2e967SMatthew G. Knepley PetscFunctionReturn(0); 69855f2e967SMatthew G. Knepley } 69955f2e967SMatthew G. Knepley 700cb1e1211SMatthew G Knepley #undef __FUNCT__ 701cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexComputeL2Diff" 702cb1e1211SMatthew G Knepley /*@C 703cb1e1211SMatthew G Knepley DMPlexComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 704cb1e1211SMatthew G Knepley 705cb1e1211SMatthew G Knepley Input Parameters: 706cb1e1211SMatthew G Knepley + dm - The DM 707cb1e1211SMatthew G Knepley . funcs - The functions to evaluate for each field component 70851259fa3SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 709cb1e1211SMatthew G Knepley - X - The coefficient vector u_h 710cb1e1211SMatthew G Knepley 711cb1e1211SMatthew G Knepley Output Parameter: 712cb1e1211SMatthew G Knepley . diff - The diff ||u - u_h||_2 713cb1e1211SMatthew G Knepley 714cb1e1211SMatthew G Knepley Level: developer 715cb1e1211SMatthew G Knepley 71615496722SMatthew G. Knepley .seealso: DMPlexProjectFunction(), DMPlexComputeL2FieldDiff(), DMPlexComputeL2GradientDiff() 717878cb397SSatish Balay @*/ 7180f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeL2Diff(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 719cb1e1211SMatthew G Knepley { 720cb1e1211SMatthew G Knepley const PetscInt debug = 0; 721cb1e1211SMatthew G Knepley PetscSection section; 722c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 723cb1e1211SMatthew G Knepley Vec localX; 72415496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 725cb1e1211SMatthew G Knepley PetscReal *coords, *v0, *J, *invJ, detJ; 726cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 72715496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 72815496722SMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, numQuadPoints, cStart, cEnd, c, field, fieldOffset; 729cb1e1211SMatthew G Knepley PetscErrorCode ierr; 730cb1e1211SMatthew G Knepley 731cb1e1211SMatthew G Knepley PetscFunctionBegin; 732c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 733cb1e1211SMatthew G Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 734cb1e1211SMatthew G Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 735cb1e1211SMatthew G Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 736cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 737cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 738cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 73915496722SMatthew G. Knepley PetscObject obj; 74015496722SMatthew G. Knepley PetscClassId id; 741c5bbbd5bSMatthew G. Knepley PetscInt Nc; 742c5bbbd5bSMatthew G. Knepley 74315496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 74415496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 74515496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 74615496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 74715496722SMatthew G. Knepley 7480f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 7490f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 75015496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 75115496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 75215496722SMatthew G. Knepley 75315496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 75415496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 75515496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 756c5bbbd5bSMatthew G. Knepley numComponents += Nc; 757cb1e1211SMatthew G Knepley } 75815496722SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 7590f2d7e86SMatthew G. Knepley ierr = DMPlexProjectFunctionLocal(dm, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 76015496722SMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,dim,&coords,dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 761cb1e1211SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 762cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 763a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 764cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 765cb1e1211SMatthew G Knepley 7668e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 767cb1e1211SMatthew G Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 768cb1e1211SMatthew G Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 769cb1e1211SMatthew G Knepley 77015496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 77115496722SMatthew G. Knepley PetscObject obj; 77215496722SMatthew G. Knepley PetscClassId id; 773c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 77415496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 775cb1e1211SMatthew G Knepley 77615496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 77715496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 77815496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 77915496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 78015496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 781cb1e1211SMatthew G Knepley if (debug) { 782cb1e1211SMatthew G Knepley char title[1024]; 783cb1e1211SMatthew G Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 78415496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 785cb1e1211SMatthew G Knepley } 786cb1e1211SMatthew G Knepley for (q = 0; q < numQuadPoints; ++q) { 78715496722SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &quadPoints[q*dim], coords); 788c110b1eeSGeoffrey Irving (*funcs[field])(coords, funcVal, ctx); 78915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 79015496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 79115496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 79215496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 79315496722SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);} 79415496722SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ; 795cb1e1211SMatthew G Knepley } 796cb1e1211SMatthew G Knepley } 79715496722SMatthew G. Knepley fieldOffset += Nb*Nc; 798cb1e1211SMatthew G Knepley } 799cb1e1211SMatthew G Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 800cb1e1211SMatthew G Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 801cb1e1211SMatthew G Knepley localDiff += elemDiff; 802cb1e1211SMatthew G Knepley } 80315496722SMatthew G. Knepley ierr = PetscFree6(funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr); 804cb1e1211SMatthew G Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 80586a74ee0SMatthew G. Knepley ierr = MPI_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 806cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 807cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 808cb1e1211SMatthew G Knepley } 809cb1e1211SMatthew G Knepley 810cb1e1211SMatthew G Knepley #undef __FUNCT__ 81140e14135SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeL2GradientDiff" 81240e14135SMatthew G. Knepley /*@C 81340e14135SMatthew G. Knepley DMPlexComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 81440e14135SMatthew G. Knepley 81540e14135SMatthew G. Knepley Input Parameters: 81640e14135SMatthew G. Knepley + dm - The DM 81740e14135SMatthew G. Knepley . funcs - The gradient functions to evaluate for each field component 81851259fa3SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 81940e14135SMatthew G. Knepley . X - The coefficient vector u_h 82040e14135SMatthew G. Knepley - n - The vector to project along 82140e14135SMatthew G. Knepley 82240e14135SMatthew G. Knepley Output Parameter: 82340e14135SMatthew G. Knepley . diff - The diff ||(grad u - grad u_h) . n||_2 82440e14135SMatthew G. Knepley 82540e14135SMatthew G. Knepley Level: developer 82640e14135SMatthew G. Knepley 82740e14135SMatthew G. Knepley .seealso: DMPlexProjectFunction(), DMPlexComputeL2Diff() 82840e14135SMatthew G. Knepley @*/ 8290f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeL2GradientDiff(DM dm, void (**funcs)(const PetscReal [], const PetscReal [], PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 830cb1e1211SMatthew G Knepley { 83140e14135SMatthew G. Knepley const PetscInt debug = 0; 832cb1e1211SMatthew G Knepley PetscSection section; 83340e14135SMatthew G. Knepley PetscQuadrature quad; 83440e14135SMatthew G. Knepley Vec localX; 83540e14135SMatthew G. Knepley PetscScalar *funcVal, *interpolantVec; 83640e14135SMatthew G. Knepley PetscReal *coords, *realSpaceDer, *v0, *J, *invJ, detJ; 83740e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 83840e14135SMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset, comp; 839cb1e1211SMatthew G Knepley PetscErrorCode ierr; 840cb1e1211SMatthew G Knepley 841cb1e1211SMatthew G Knepley PetscFunctionBegin; 842c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 84340e14135SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 84440e14135SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 84540e14135SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 84640e14135SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 84740e14135SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 848652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 8490f2d7e86SMatthew G. Knepley PetscFE fe; 85040e14135SMatthew G. Knepley PetscInt Nc; 851652b88e8SMatthew G. Knepley 8520f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 8530f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 8540f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 85540e14135SMatthew G. Knepley numComponents += Nc; 856652b88e8SMatthew G. Knepley } 85740e14135SMatthew G. Knepley /* ierr = DMPlexProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */ 85840e14135SMatthew G. Knepley ierr = PetscMalloc7(numComponents,&funcVal,dim,&coords,dim,&realSpaceDer,dim,&v0,dim*dim,&J,dim*dim,&invJ,dim,&interpolantVec);CHKERRQ(ierr); 85940e14135SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 86040e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 86140e14135SMatthew G. Knepley PetscScalar *x = NULL; 86240e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 863652b88e8SMatthew G. Knepley 8648e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 86540e14135SMatthew G. Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 86640e14135SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 86740e14135SMatthew G. Knepley 86840e14135SMatthew G. Knepley for (field = 0, comp = 0, fieldOffset = 0; field < numFields; ++field) { 8690f2d7e86SMatthew G. Knepley PetscFE fe; 87051259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 87121454ff5SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 87240e14135SMatthew G. Knepley PetscReal *basisDer; 87321454ff5SMatthew G. Knepley PetscInt numQuadPoints, Nb, Ncomp, q, d, e, fc, f, g; 87440e14135SMatthew G. Knepley 8750f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 87621454ff5SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 8770f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 8780f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Ncomp);CHKERRQ(ierr); 8790f2d7e86SMatthew G. Knepley ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr); 88040e14135SMatthew G. Knepley if (debug) { 88140e14135SMatthew G. Knepley char title[1024]; 88240e14135SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 88340e14135SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Ncomp, &x[fieldOffset]);CHKERRQ(ierr); 884652b88e8SMatthew G. Knepley } 88540e14135SMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 88640e14135SMatthew G. Knepley for (d = 0; d < dim; d++) { 88740e14135SMatthew G. Knepley coords[d] = v0[d]; 88840e14135SMatthew G. Knepley for (e = 0; e < dim; e++) { 88940e14135SMatthew G. Knepley coords[d] += J[d*dim+e]*(quadPoints[q*dim+e] + 1.0); 890652b88e8SMatthew G. Knepley } 89140e14135SMatthew G. Knepley } 89251259fa3SMatthew G. Knepley (*funcs[field])(coords, n, funcVal, ctx); 89340e14135SMatthew G. Knepley for (fc = 0; fc < Ncomp; ++fc) { 89440e14135SMatthew G. Knepley PetscScalar interpolant = 0.0; 89540e14135SMatthew G. Knepley 89640e14135SMatthew G. Knepley for (d = 0; d < dim; ++d) interpolantVec[d] = 0.0; 89740e14135SMatthew G. Knepley for (f = 0; f < Nb; ++f) { 89840e14135SMatthew G. Knepley const PetscInt fidx = f*Ncomp+fc; 89940e14135SMatthew G. Knepley 90040e14135SMatthew G. Knepley for (d = 0; d < dim; ++d) { 90140e14135SMatthew G. Knepley realSpaceDer[d] = 0.0; 90240e14135SMatthew G. Knepley for (g = 0; g < dim; ++g) { 90340e14135SMatthew G. Knepley realSpaceDer[d] += invJ[g*dim+d]*basisDer[(q*Nb*Ncomp+fidx)*dim+g]; 90440e14135SMatthew G. Knepley } 90540e14135SMatthew G. Knepley interpolantVec[d] += x[fieldOffset+fidx]*realSpaceDer[d]; 90640e14135SMatthew G. Knepley } 90740e14135SMatthew G. Knepley } 90840e14135SMatthew G. Knepley for (d = 0; d < dim; ++d) interpolant += interpolantVec[d]*n[d]; 90940e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);} 91040e14135SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ; 91140e14135SMatthew G. Knepley } 91240e14135SMatthew G. Knepley } 91340e14135SMatthew G. Knepley comp += Ncomp; 91440e14135SMatthew G. Knepley fieldOffset += Nb*Ncomp; 91540e14135SMatthew G. Knepley } 91640e14135SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 91740e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 91840e14135SMatthew G. Knepley localDiff += elemDiff; 91940e14135SMatthew G. Knepley } 92040e14135SMatthew G. Knepley ierr = PetscFree7(funcVal,coords,realSpaceDer,v0,J,invJ,interpolantVec);CHKERRQ(ierr); 92140e14135SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 92240e14135SMatthew G. Knepley ierr = MPI_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 92340e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 924cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 925cb1e1211SMatthew G Knepley } 926cb1e1211SMatthew G Knepley 927a0845e3aSMatthew G. Knepley #undef __FUNCT__ 92873d901b8SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeL2FieldDiff" 92915496722SMatthew G. Knepley /*@C 93015496722SMatthew G. Knepley DMPlexComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 93115496722SMatthew G. Knepley 93215496722SMatthew G. Knepley Input Parameters: 93315496722SMatthew G. Knepley + dm - The DM 93415496722SMatthew G. Knepley . funcs - The functions to evaluate for each field component 93515496722SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 93615496722SMatthew G. Knepley - X - The coefficient vector u_h 93715496722SMatthew G. Knepley 93815496722SMatthew G. Knepley Output Parameter: 93915496722SMatthew G. Knepley . diff - The array of differences, ||u^f - u^f_h||_2 94015496722SMatthew G. Knepley 94115496722SMatthew G. Knepley Level: developer 94215496722SMatthew G. Knepley 94315496722SMatthew G. Knepley .seealso: DMPlexProjectFunction(), DMPlexComputeL2Diff(), DMPlexComputeL2GradientDiff() 94415496722SMatthew G. Knepley @*/ 9450f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeL2FieldDiff(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 94673d901b8SMatthew G. Knepley { 94773d901b8SMatthew G. Knepley const PetscInt debug = 0; 94873d901b8SMatthew G. Knepley PetscSection section; 94973d901b8SMatthew G. Knepley PetscQuadrature quad; 95073d901b8SMatthew G. Knepley Vec localX; 95115496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 95273d901b8SMatthew G. Knepley PetscReal *coords, *v0, *J, *invJ, detJ; 95373d901b8SMatthew G. Knepley PetscReal *localDiff; 95415496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 95515496722SMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, numQuadPoints, cStart, cEnd, c, field, fieldOffset; 95673d901b8SMatthew G. Knepley PetscErrorCode ierr; 95773d901b8SMatthew G. Knepley 95873d901b8SMatthew G. Knepley PetscFunctionBegin; 959c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 96073d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 96173d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 96273d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 96373d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 96473d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 96573d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 96615496722SMatthew G. Knepley PetscObject obj; 96715496722SMatthew G. Knepley PetscClassId id; 96873d901b8SMatthew G. Knepley PetscInt Nc; 96973d901b8SMatthew G. Knepley 97015496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 97115496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 97215496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 97315496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 97415496722SMatthew G. Knepley 9750f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 9760f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 97715496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 97815496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 97915496722SMatthew G. Knepley 98015496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 98115496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 98215496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 98373d901b8SMatthew G. Knepley numComponents += Nc; 98473d901b8SMatthew G. Knepley } 98515496722SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 9860f2d7e86SMatthew G. Knepley ierr = DMPlexProjectFunctionLocal(dm, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 98715496722SMatthew G. Knepley ierr = PetscCalloc7(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,dim,&coords,dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 98873d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 98973d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 99073d901b8SMatthew G. Knepley PetscScalar *x = NULL; 99173d901b8SMatthew G. Knepley 9928e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 99373d901b8SMatthew G. Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 99473d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 99573d901b8SMatthew G. Knepley 99615496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 99715496722SMatthew G. Knepley PetscObject obj; 99815496722SMatthew G. Knepley PetscClassId id; 99973d901b8SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 100015496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 100173d901b8SMatthew G. Knepley 100215496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 100315496722SMatthew G. Knepley 100415496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 100515496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 100615496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 100715496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 100815496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 100973d901b8SMatthew G. Knepley if (debug) { 101073d901b8SMatthew G. Knepley char title[1024]; 101173d901b8SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 101215496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 101373d901b8SMatthew G. Knepley } 101473d901b8SMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 101515496722SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &quadPoints[q*dim], coords); 101673d901b8SMatthew G. Knepley (*funcs[field])(coords, funcVal, ctx); 101715496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 101815496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 101915496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 102015496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 102115496722SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);} 102215496722SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ; 102373d901b8SMatthew G. Knepley } 102473d901b8SMatthew G. Knepley } 102515496722SMatthew G. Knepley fieldOffset += Nb*Nc; 102673d901b8SMatthew G. Knepley localDiff[field] += elemDiff; 102773d901b8SMatthew G. Knepley } 102873d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 102973d901b8SMatthew G. Knepley } 103073d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 103173d901b8SMatthew G. Knepley ierr = MPI_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 103273d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]); 103315496722SMatthew G. Knepley ierr = PetscFree7(localDiff,funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr); 103473d901b8SMatthew G. Knepley PetscFunctionReturn(0); 103573d901b8SMatthew G. Knepley } 103673d901b8SMatthew G. Knepley 103773d901b8SMatthew G. Knepley #undef __FUNCT__ 103873d901b8SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeIntegralFEM" 103973d901b8SMatthew G. Knepley /*@ 104073d901b8SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the local integral F from the local input X using pointwise functions specified by the user 104173d901b8SMatthew G. Knepley 104273d901b8SMatthew G. Knepley Input Parameters: 104373d901b8SMatthew G. Knepley + dm - The mesh 104473d901b8SMatthew G. Knepley . X - Local input vector 104573d901b8SMatthew G. Knepley - user - The user context 104673d901b8SMatthew G. Knepley 104773d901b8SMatthew G. Knepley Output Parameter: 104873d901b8SMatthew G. Knepley . integral - Local integral for each field 104973d901b8SMatthew G. Knepley 105073d901b8SMatthew G. Knepley Level: developer 105173d901b8SMatthew G. Knepley 105273d901b8SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 105373d901b8SMatthew G. Knepley @*/ 10540f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscReal *integral, void *user) 105573d901b8SMatthew G. Knepley { 105673d901b8SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 105773d901b8SMatthew G. Knepley DM dmAux; 105873d901b8SMatthew G. Knepley Vec localX, A; 10592764a2aaSMatthew G. Knepley PetscDS prob, probAux = NULL; 106073d901b8SMatthew G. Knepley PetscQuadrature q; 106173d901b8SMatthew G. Knepley PetscSection section, sectionAux; 1062bbce034cSMatthew G. Knepley PetscFECellGeom *cgeom; 106373d901b8SMatthew G. Knepley PetscScalar *u, *a = NULL; 10640f2d7e86SMatthew G. Knepley PetscInt dim, Nf, f, numCells, cStart, cEnd, c; 10650f2d7e86SMatthew G. Knepley PetscInt totDim, totDimAux; 106673d901b8SMatthew G. Knepley PetscErrorCode ierr; 106773d901b8SMatthew G. Knepley 106873d901b8SMatthew G. Knepley PetscFunctionBegin; 106973d901b8SMatthew G. Knepley /*ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);*/ 107073d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 107173d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 107273d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1073c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 107473d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 10752764a2aaSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 10762764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 107773d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 107873d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 107973d901b8SMatthew G. Knepley numCells = cEnd - cStart; 10800f2d7e86SMatthew G. Knepley for (f = 0; f < Nf; ++f) {integral[f] = 0.0;} 108173d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 108273d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 108373d901b8SMatthew G. Knepley if (dmAux) { 108473d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 10852764a2aaSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 10862764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 108773d901b8SMatthew G. Knepley } 1088d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, localX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 1089bbce034cSMatthew G. Knepley ierr = PetscMalloc2(numCells*totDim,&u,numCells,&cgeom);CHKERRQ(ierr); 10900f2d7e86SMatthew G. Knepley if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);} 109173d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 109273d901b8SMatthew G. Knepley PetscScalar *x = NULL; 109373d901b8SMatthew G. Knepley PetscInt i; 109473d901b8SMatthew G. Knepley 1095bbce034cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, cgeom[c].v0, cgeom[c].J, cgeom[c].invJ, &cgeom[c].detJ);CHKERRQ(ierr); 1096bbce034cSMatthew G. Knepley if (cgeom[c].detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", cgeom[c].detJ, c); 109773d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 10980f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 109973d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 110073d901b8SMatthew G. Knepley if (dmAux) { 110173d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 11020f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 110373d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 110473d901b8SMatthew G. Knepley } 110573d901b8SMatthew G. Knepley } 110673d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 11070f2d7e86SMatthew G. Knepley PetscFE fe; 110873d901b8SMatthew G. Knepley PetscInt numQuadPoints, Nb; 110973d901b8SMatthew G. Knepley /* Conforming batches */ 111073d901b8SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 111173d901b8SMatthew G. Knepley /* Remainder */ 111273d901b8SMatthew G. Knepley PetscInt Nr, offset; 111373d901b8SMatthew G. Knepley 11142764a2aaSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr); 11150f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 11160f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 11170f2d7e86SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 111873d901b8SMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, &numQuadPoints, NULL, NULL);CHKERRQ(ierr); 111973d901b8SMatthew G. Knepley blockSize = Nb*numQuadPoints; 112073d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 11210f2d7e86SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 112273d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 112373d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 112473d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 112573d901b8SMatthew G. Knepley offset = numCells - Nr; 1126bbce034cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Ne, cgeom, u, probAux, a, integral);CHKERRQ(ierr); 1127bbce034cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Nr, &cgeom[offset], &u[offset*totDim], probAux, &a[offset*totDimAux], integral);CHKERRQ(ierr); 112873d901b8SMatthew G. Knepley } 1129bbce034cSMatthew G. Knepley ierr = PetscFree2(u,cgeom);CHKERRQ(ierr); 113073d901b8SMatthew G. Knepley if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);} 113173d901b8SMatthew G. Knepley if (mesh->printFEM) { 113273d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Local integral:");CHKERRQ(ierr); 113373d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", integral[f]);CHKERRQ(ierr);} 113473d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr); 113573d901b8SMatthew G. Knepley } 113673d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 113773d901b8SMatthew G. Knepley /* TODO: Allreduce for integral */ 113873d901b8SMatthew G. Knepley /*ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);*/ 113973d901b8SMatthew G. Knepley PetscFunctionReturn(0); 114073d901b8SMatthew G. Knepley } 114173d901b8SMatthew G. Knepley 114273d901b8SMatthew G. Knepley #undef __FUNCT__ 1143d69c5d34SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInterpolatorFEM" 1144d69c5d34SMatthew G. Knepley /*@ 1145d69c5d34SMatthew G. Knepley DMPlexComputeInterpolatorFEM - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM. 1146d69c5d34SMatthew G. Knepley 1147d69c5d34SMatthew G. Knepley Input Parameters: 1148d69c5d34SMatthew G. Knepley + dmf - The fine mesh 1149d69c5d34SMatthew G. Knepley . dmc - The coarse mesh 1150d69c5d34SMatthew G. Knepley - user - The user context 1151d69c5d34SMatthew G. Knepley 1152d69c5d34SMatthew G. Knepley Output Parameter: 1153934789fcSMatthew G. Knepley . In - The interpolation matrix 1154d69c5d34SMatthew G. Knepley 1155d69c5d34SMatthew G. Knepley Note: 1156d69c5d34SMatthew G. Knepley The first member of the user context must be an FEMContext. 1157d69c5d34SMatthew G. Knepley 1158d69c5d34SMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 1159d69c5d34SMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 1160d69c5d34SMatthew G. Knepley 1161d69c5d34SMatthew G. Knepley Level: developer 1162d69c5d34SMatthew G. Knepley 1163d69c5d34SMatthew G. Knepley .seealso: DMPlexComputeJacobianFEM() 1164d69c5d34SMatthew G. Knepley @*/ 1165934789fcSMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorFEM(DM dmc, DM dmf, Mat In, void *user) 1166d69c5d34SMatthew G. Knepley { 1167d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 1168d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 11692764a2aaSMatthew G. Knepley PetscDS prob; 1170d69c5d34SMatthew G. Knepley PetscFE *feRef; 1171d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 1172d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 1173d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 1174942a7a06SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 11750f2d7e86SMatthew G. Knepley PetscInt cTotDim, rTotDim = 0; 1176d69c5d34SMatthew G. Knepley PetscErrorCode ierr; 1177d69c5d34SMatthew G. Knepley 1178d69c5d34SMatthew G. Knepley PetscFunctionBegin; 1179d69c5d34SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1180c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 1181d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 1182d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 1183d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 1184d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 1185d69c5d34SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 1186d69c5d34SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 11872764a2aaSMatthew G. Knepley ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr); 1188d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(Nf,&feRef);CHKERRQ(ierr); 1189d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 11900f2d7e86SMatthew G. Knepley PetscFE fe; 11910f2d7e86SMatthew G. Knepley PetscInt rNb, Nc; 1192d69c5d34SMatthew G. Knepley 11932764a2aaSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr); 11940f2d7e86SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 1195d69c5d34SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr); 11960f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 11970f2d7e86SMatthew G. Knepley rTotDim += rNb*Nc; 1198d69c5d34SMatthew G. Knepley } 11992764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 12000f2d7e86SMatthew G. Knepley ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr); 12010f2d7e86SMatthew G. Knepley ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr); 1202d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 1203d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 1204d69c5d34SMatthew G. Knepley PetscQuadrature f; 1205d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 1206d69c5d34SMatthew G. Knepley PetscReal *points; 1207d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 1208d69c5d34SMatthew G. Knepley 1209d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 1210d69c5d34SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr); 12110f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr); 1212d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr); 1213d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 1214d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1215d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, NULL);CHKERRQ(ierr); 1216d69c5d34SMatthew G. Knepley npoints += Np; 1217d69c5d34SMatthew G. Knepley } 1218d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr); 1219d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1220d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1221d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 1222d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 1223d69c5d34SMatthew G. Knepley } 1224d69c5d34SMatthew G. Knepley 1225d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 12260f2d7e86SMatthew G. Knepley PetscFE fe; 1227d69c5d34SMatthew G. Knepley PetscReal *B; 122836a6d9c0SMatthew G. Knepley PetscInt NcJ, cpdim, j; 1229d69c5d34SMatthew G. Knepley 1230d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 12312764a2aaSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldJ, (PetscObject *) &fe);CHKERRQ(ierr); 12320f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr); 12330f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 1234ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 1235ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 12367c927364SMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 12370f2d7e86SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr); 1238d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1239d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1240d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 1241d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 124236a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 12430f2d7e86SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p]; 124436a6d9c0SMatthew G. Knepley } 1245d69c5d34SMatthew G. Knepley } 1246d69c5d34SMatthew G. Knepley } 12470f2d7e86SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 1248ffe73a53SMatthew G. Knepley } 124936a6d9c0SMatthew G. Knepley offsetJ += cpdim*NcJ; 1250d69c5d34SMatthew G. Knepley } 1251d69c5d34SMatthew G. Knepley offsetI += fpdim*Nc; 1252549a8adaSMatthew G. Knepley ierr = PetscFree(points);CHKERRQ(ierr); 1253d69c5d34SMatthew G. Knepley } 12540f2d7e86SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);} 12557f5b169aSMatthew G. Knepley /* Preallocate matrix */ 12567f5b169aSMatthew G. Knepley { 12577f5b169aSMatthew G. Knepley PetscHashJK ht; 12587f5b169aSMatthew G. Knepley PetscLayout rLayout; 12597f5b169aSMatthew G. Knepley PetscInt *dnz, *onz, *cellCIndices, *cellFIndices; 12607f5b169aSMatthew G. Knepley PetscInt locRows, rStart, rEnd, cell, r; 12617f5b169aSMatthew G. Knepley 12627f5b169aSMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr); 12637f5b169aSMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr); 12647f5b169aSMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 12657f5b169aSMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 12667f5b169aSMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 12677f5b169aSMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 12687f5b169aSMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 12697f5b169aSMatthew G. Knepley ierr = PetscCalloc4(locRows,&dnz,locRows,&onz,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr); 12707f5b169aSMatthew G. Knepley ierr = PetscHashJKCreate(&ht);CHKERRQ(ierr); 12717f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 12727f5b169aSMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr); 12737f5b169aSMatthew G. Knepley for (r = 0; r < rTotDim; ++r) { 12747f5b169aSMatthew G. Knepley PetscHashJKKey key; 12757f5b169aSMatthew G. Knepley PetscHashJKIter missing, iter; 12767f5b169aSMatthew G. Knepley 12777f5b169aSMatthew G. Knepley key.j = cellFIndices[r]; 12787f5b169aSMatthew G. Knepley if (key.j < 0) continue; 12797f5b169aSMatthew G. Knepley for (c = 0; c < cTotDim; ++c) { 12807f5b169aSMatthew G. Knepley key.k = cellCIndices[c]; 12817f5b169aSMatthew G. Knepley if (key.k < 0) continue; 12827f5b169aSMatthew G. Knepley ierr = PetscHashJKPut(ht, key, &missing, &iter);CHKERRQ(ierr); 12837f5b169aSMatthew G. Knepley if (missing) { 12847f5b169aSMatthew G. Knepley ierr = PetscHashJKSet(ht, iter, 1);CHKERRQ(ierr); 12857f5b169aSMatthew G. Knepley if ((key.k >= rStart) && (key.k < rEnd)) ++dnz[key.j-rStart]; 12867f5b169aSMatthew G. Knepley else ++onz[key.j-rStart]; 12877f5b169aSMatthew G. Knepley } 12887f5b169aSMatthew G. Knepley } 12897f5b169aSMatthew G. Knepley } 12907f5b169aSMatthew G. Knepley } 12917f5b169aSMatthew G. Knepley ierr = PetscHashJKDestroy(&ht);CHKERRQ(ierr); 12927f5b169aSMatthew G. Knepley ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 12937f5b169aSMatthew G. Knepley ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 12947f5b169aSMatthew G. Knepley ierr = PetscFree4(dnz,onz,cellCIndices,cellFIndices);CHKERRQ(ierr); 12957f5b169aSMatthew G. Knepley } 12967f5b169aSMatthew G. Knepley /* Fill matrix */ 12977f5b169aSMatthew G. Knepley ierr = MatZeroEntries(In);CHKERRQ(ierr); 1298d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1299934789fcSMatthew G. Knepley ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr); 1300d69c5d34SMatthew G. Knepley } 1301549a8adaSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 1302d69c5d34SMatthew G. Knepley ierr = PetscFree(feRef);CHKERRQ(ierr); 1303549a8adaSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 1304934789fcSMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1305934789fcSMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1306d69c5d34SMatthew G. Knepley if (mesh->printFEM) { 1307d69c5d34SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_WORLD, "%s:\n", name);CHKERRQ(ierr); 1308934789fcSMatthew G. Knepley ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr); 1309934789fcSMatthew G. Knepley ierr = MatView(In, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1310d69c5d34SMatthew G. Knepley } 1311d69c5d34SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1312d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 1313d69c5d34SMatthew G. Knepley } 13146c73c22cSMatthew G. Knepley 13156c73c22cSMatthew G. Knepley #undef __FUNCT__ 13167c927364SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInjectorFEM" 13177c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 13187c927364SMatthew G. Knepley { 1319e9d4ef1bSMatthew G. Knepley PetscDS prob; 13207c927364SMatthew G. Knepley PetscFE *feRef; 13217c927364SMatthew G. Knepley Vec fv, cv; 13227c927364SMatthew G. Knepley IS fis, cis; 13237c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 13247c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 13257c927364SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, offsetC, offsetF, m; 13267c927364SMatthew G. Knepley PetscErrorCode ierr; 13277c927364SMatthew G. Knepley 13287c927364SMatthew G. Knepley PetscFunctionBegin; 132975a69067SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1330c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 13317c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 13327c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 13337c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 13347c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 13357c927364SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 13367c927364SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 1337e9d4ef1bSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 13387c927364SMatthew G. Knepley ierr = PetscMalloc1(Nf,&feRef);CHKERRQ(ierr); 13397c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 13407c927364SMatthew G. Knepley PetscFE fe; 13417c927364SMatthew G. Knepley PetscInt fNb, Nc; 13427c927364SMatthew G. Knepley 1343e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr); 13447c927364SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 13457c927364SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr); 13467c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 13477c927364SMatthew G. Knepley fTotDim += fNb*Nc; 13487c927364SMatthew G. Knepley } 1349e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 13507c927364SMatthew G. Knepley ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr); 13517c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 13527c927364SMatthew G. Knepley PetscFE feC; 13537c927364SMatthew G. Knepley PetscDualSpace QF, QC; 13547c927364SMatthew G. Knepley PetscInt NcF, NcC, fpdim, cpdim; 13557c927364SMatthew G. Knepley 1356e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr); 13577c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr); 13587c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr); 13597c927364SMatthew G. Knepley if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC); 13607c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr); 13617c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 13627c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr); 13637c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 13647c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 13657c927364SMatthew G. Knepley PetscQuadrature cfunc; 13667c927364SMatthew G. Knepley const PetscReal *cqpoints; 13677c927364SMatthew G. Knepley PetscInt NpC; 13687c927364SMatthew G. Knepley 13697c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr); 13707c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(cfunc, NULL, &NpC, &cqpoints, NULL);CHKERRQ(ierr); 13717c927364SMatthew G. Knepley if (NpC != 1) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 13727c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 13737c927364SMatthew G. Knepley PetscQuadrature ffunc; 13747c927364SMatthew G. Knepley const PetscReal *fqpoints; 13757c927364SMatthew G. Knepley PetscReal sum = 0.0; 13767c927364SMatthew G. Knepley PetscInt NpF, comp; 13777c927364SMatthew G. Knepley 13787c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr); 13797c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(ffunc, NULL, &NpF, &fqpoints, NULL);CHKERRQ(ierr); 13807c927364SMatthew G. Knepley if (NpC != NpF) continue; 13817c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 13827c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 13837c927364SMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 13847c927364SMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+f)*NcF+comp; 13857c927364SMatthew G. Knepley } 13867c927364SMatthew G. Knepley break; 13877c927364SMatthew G. Knepley } 13887c927364SMatthew G. Knepley } 13897c927364SMatthew G. Knepley offsetC += cpdim*NcC; 13907c927364SMatthew G. Knepley offsetF += fpdim*NcF; 13917c927364SMatthew G. Knepley } 13927c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 13937c927364SMatthew G. Knepley ierr = PetscFree(feRef);CHKERRQ(ierr); 13947c927364SMatthew G. Knepley 13957c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr); 13967c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr); 13977c927364SMatthew G. Knepley ierr = VecGetOwnershipRange(cv, &startC, NULL);CHKERRQ(ierr); 13987c927364SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr); 13997c927364SMatthew G. Knepley ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr); 1400aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr); 1401aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr); 14027c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 14037c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 14047c927364SMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr); 14057c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 14067c927364SMatthew G. Knepley if (cellCIndices[d] < 0) continue; 14077c927364SMatthew G. Knepley if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 14087c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 14097c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 14107c927364SMatthew G. Knepley } 14117c927364SMatthew G. Knepley } 14127c927364SMatthew G. Knepley ierr = PetscFree(cmap);CHKERRQ(ierr); 14137c927364SMatthew G. Knepley ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr); 14147c927364SMatthew G. Knepley 14157c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr); 14167c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr); 14177c927364SMatthew G. Knepley ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr); 14187c927364SMatthew G. Knepley ierr = ISDestroy(&cis);CHKERRQ(ierr); 14197c927364SMatthew G. Knepley ierr = ISDestroy(&fis);CHKERRQ(ierr); 14207c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr); 14217c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr); 142275a69067SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1423cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1424cb1e1211SMatthew G Knepley } 1425