1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h> 5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 8a0845e3aSMatthew G. Knepley 95f0b18bfSMatthew G. Knepley PetscBool Clementcite = PETSC_FALSE; 105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n" 115f0b18bfSMatthew G. Knepley " title = {Approximation by finite element functions using local regularization},\n" 125f0b18bfSMatthew G. Knepley " author = {Philippe Cl{\\'e}ment},\n" 135f0b18bfSMatthew G. Knepley " journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n" 145f0b18bfSMatthew G. Knepley " volume = {9},\n" 155f0b18bfSMatthew G. Knepley " number = {R2},\n" 165f0b18bfSMatthew G. Knepley " pages = {77--84},\n" 175f0b18bfSMatthew G. Knepley " year = {1975}\n}\n"; 185f0b18bfSMatthew G. Knepley 19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 20d71ae5a4SJacob Faibussowitsch { 212f856554SMatthew G. Knepley PetscBool isPlex; 222f856554SMatthew G. Knepley 232f856554SMatthew G. Knepley PetscFunctionBegin; 249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 252f856554SMatthew G. Knepley if (isPlex) { 262f856554SMatthew G. Knepley *plex = dm; 279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 282f856554SMatthew G. Knepley } else { 299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 302f856554SMatthew G. Knepley if (!*plex) { 319566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 33cbf8eb3cSStefano Zampini } else { 34cbf8eb3cSStefano Zampini PetscCall(PetscObjectReference((PetscObject)*plex)); 35cbf8eb3cSStefano Zampini } 362f856554SMatthew G. Knepley if (copy) { 372f856554SMatthew G. Knepley DMSubDomainHookLink link; 389a2a23afSMatthew G. Knepley 39bb4b53efSMatthew G. Knepley PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, *plex)); 409566063dSJacob Faibussowitsch PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 419a2a23afSMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 422f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 439566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx)); 442f856554SMatthew G. Knepley } 452f856554SMatthew G. Knepley } 462f856554SMatthew G. Knepley } 473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 482f856554SMatthew G. Knepley } 492f856554SMatthew G. Knepley 5049abdd8aSBarry Smith static PetscErrorCode PetscContainerCtxDestroy_PetscFEGeom(void **ctx) 51d71ae5a4SJacob Faibussowitsch { 5249abdd8aSBarry Smith PetscFEGeom *geom = (PetscFEGeom *)*ctx; 539b6f715bSMatthew G. Knepley 549b6f715bSMatthew G. Knepley PetscFunctionBegin; 559566063dSJacob Faibussowitsch PetscCall(PetscFEGeomDestroy(&geom)); 563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 579b6f715bSMatthew G. Knepley } 589b6f715bSMatthew G. Knepley 59ac9d17c7SMatthew G. Knepley static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscFEGeomMode mode, PetscFEGeom **geom) 60d71ae5a4SJacob Faibussowitsch { 619b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 629b6f715bSMatthew G. Knepley PetscObjectId id; 639b6f715bSMatthew G. Knepley PetscContainer container; 649b6f715bSMatthew G. Knepley 659b6f715bSMatthew G. Knepley PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 6763a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id)); 689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 699b6f715bSMatthew G. Knepley if (container) { 709566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 719b6f715bSMatthew G. Knepley } else { 72ac9d17c7SMatthew G. Knepley PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, mode, geom)); 739566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 749566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 7549abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, PetscContainerCtxDestroy_PetscFEGeom)); 769566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 779566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 789b6f715bSMatthew G. Knepley } 793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 809b6f715bSMatthew G. Knepley } 819b6f715bSMatthew G. Knepley 82ac9d17c7SMatthew G. Knepley static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscFEGeomMode mode, PetscFEGeom **geom) 83d71ae5a4SJacob Faibussowitsch { 849b6f715bSMatthew G. Knepley PetscFunctionBegin; 859b6f715bSMatthew G. Knepley *geom = NULL; 863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 879b6f715bSMatthew G. Knepley } 889b6f715bSMatthew G. Knepley 8946fa42a0SMatthew G. Knepley /*@ 9046fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9146fa42a0SMatthew G. Knepley 9220f4b53cSBarry Smith Not Collective 9346fa42a0SMatthew G. Knepley 944165533cSJose E. Roman Input Parameters: 95a1cb98faSBarry Smith + dm - the `DM` 9646fa42a0SMatthew G. Knepley - unit - The SI unit 9746fa42a0SMatthew G. Knepley 984165533cSJose E. Roman Output Parameter: 9946fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 10046fa42a0SMatthew G. Knepley 10146fa42a0SMatthew G. Knepley Level: advanced 10246fa42a0SMatthew G. Knepley 1031cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit` 10446fa42a0SMatthew G. Knepley @*/ 105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 106d71ae5a4SJacob Faibussowitsch { 107cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 108cb1e1211SMatthew G Knepley 109cb1e1211SMatthew G Knepley PetscFunctionBegin; 110cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1114f572ea9SToby Isaac PetscAssertPointer(scale, 3); 112cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 1133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 114cb1e1211SMatthew G Knepley } 115cb1e1211SMatthew G Knepley 11646fa42a0SMatthew G. Knepley /*@ 11746fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11846fa42a0SMatthew G. Knepley 11920f4b53cSBarry Smith Not Collective 12046fa42a0SMatthew G. Knepley 1214165533cSJose E. Roman Input Parameters: 122a1cb98faSBarry Smith + dm - the `DM` 12346fa42a0SMatthew G. Knepley . unit - The SI unit 12446fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12546fa42a0SMatthew G. Knepley 12646fa42a0SMatthew G. Knepley Level: advanced 12746fa42a0SMatthew G. Knepley 1281cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit` 12946fa42a0SMatthew G. Knepley @*/ 130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 131d71ae5a4SJacob Faibussowitsch { 132cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 133cb1e1211SMatthew G Knepley 134cb1e1211SMatthew G Knepley PetscFunctionBegin; 135cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 136cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 1373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138cb1e1211SMatthew G Knepley } 139cb1e1211SMatthew G Knepley 140d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed_Plex(DM dm, PetscBool *useCeed) 141d2b2dc1eSMatthew G. Knepley { 142d2b2dc1eSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 143d2b2dc1eSMatthew G. Knepley 144d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 145d2b2dc1eSMatthew G. Knepley *useCeed = mesh->useCeed; 146d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 147d2b2dc1eSMatthew G. Knepley } 148d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed_Plex(DM dm, PetscBool useCeed) 149d2b2dc1eSMatthew G. Knepley { 150d2b2dc1eSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 151d2b2dc1eSMatthew G. Knepley 152d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 153d2b2dc1eSMatthew G. Knepley mesh->useCeed = useCeed; 154d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 155d2b2dc1eSMatthew G. Knepley } 156d2b2dc1eSMatthew G. Knepley 157d2b2dc1eSMatthew G. Knepley /*@ 158d2b2dc1eSMatthew G. Knepley DMPlexGetUseCeed - Get flag for using the LibCEED backend 159d2b2dc1eSMatthew G. Knepley 160d2b2dc1eSMatthew G. Knepley Not collective 161d2b2dc1eSMatthew G. Knepley 162d2b2dc1eSMatthew G. Knepley Input Parameter: 163d2b2dc1eSMatthew G. Knepley . dm - The `DM` 164d2b2dc1eSMatthew G. Knepley 165d2b2dc1eSMatthew G. Knepley Output Parameter: 166d2b2dc1eSMatthew G. Knepley . useCeed - The flag 167d2b2dc1eSMatthew G. Knepley 168d2b2dc1eSMatthew G. Knepley Level: intermediate 169d2b2dc1eSMatthew G. Knepley 170d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetUseCeed()` 171d2b2dc1eSMatthew G. Knepley @*/ 172d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexGetUseCeed(DM dm, PetscBool *useCeed) 173d2b2dc1eSMatthew G. Knepley { 174d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 175d2b2dc1eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 176d2b2dc1eSMatthew G. Knepley PetscAssertPointer(useCeed, 2); 177d2b2dc1eSMatthew G. Knepley *useCeed = PETSC_FALSE; 178d2b2dc1eSMatthew G. Knepley PetscTryMethod(dm, "DMPlexGetUseCeed_C", (DM, PetscBool *), (dm, useCeed)); 179d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 180d2b2dc1eSMatthew G. Knepley } 181d2b2dc1eSMatthew G. Knepley 182d2b2dc1eSMatthew G. Knepley /*@ 183d2b2dc1eSMatthew G. Knepley DMPlexSetUseCeed - Set flag for using the LibCEED backend 184d2b2dc1eSMatthew G. Knepley 185d2b2dc1eSMatthew G. Knepley Not collective 186d2b2dc1eSMatthew G. Knepley 187d2b2dc1eSMatthew G. Knepley Input Parameters: 188d2b2dc1eSMatthew G. Knepley + dm - The `DM` 189d2b2dc1eSMatthew G. Knepley - useCeed - The flag 190d2b2dc1eSMatthew G. Knepley 191d2b2dc1eSMatthew G. Knepley Level: intermediate 192d2b2dc1eSMatthew G. Knepley 193fe8e7dddSPierre Jolivet .seealso: `DMPlexGetUseCeed()` 194d2b2dc1eSMatthew G. Knepley @*/ 195d2b2dc1eSMatthew G. Knepley PetscErrorCode DMPlexSetUseCeed(DM dm, PetscBool useCeed) 196d2b2dc1eSMatthew G. Knepley { 197d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 198d2b2dc1eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 199d2b2dc1eSMatthew G. Knepley PetscValidLogicalCollectiveBool(dm, useCeed, 2); 200d2b2dc1eSMatthew G. Knepley PetscUseMethod(dm, "DMPlexSetUseCeed_C", (DM, PetscBool), (dm, useCeed)); 201d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 202d2b2dc1eSMatthew G. Knepley } 203d2b2dc1eSMatthew G. Knepley 204e8e188d2SZach Atkins /*@ 205e8e188d2SZach Atkins DMPlexGetUseMatClosurePermutation - Get flag for using a closure permutation for matrix insertion 206e8e188d2SZach Atkins 207e8e188d2SZach Atkins Not collective 208e8e188d2SZach Atkins 209e8e188d2SZach Atkins Input Parameter: 210e8e188d2SZach Atkins . dm - The `DM` 211e8e188d2SZach Atkins 212e8e188d2SZach Atkins Output Parameter: 213e8e188d2SZach Atkins . useClPerm - The flag 214e8e188d2SZach Atkins 215e8e188d2SZach Atkins Level: intermediate 216e8e188d2SZach Atkins 217e8e188d2SZach Atkins .seealso: `DMPlexSetUseMatClosurePermutation()` 218e8e188d2SZach Atkins @*/ 219e8e188d2SZach Atkins PetscErrorCode DMPlexGetUseMatClosurePermutation(DM dm, PetscBool *useClPerm) 220e8e188d2SZach Atkins { 221e8e188d2SZach Atkins DM_Plex *mesh = (DM_Plex *)dm->data; 222e8e188d2SZach Atkins 223e8e188d2SZach Atkins PetscFunctionBegin; 224e8e188d2SZach Atkins PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 225e8e188d2SZach Atkins PetscAssertPointer(useClPerm, 2); 226e8e188d2SZach Atkins *useClPerm = mesh->useMatClPerm; 227e8e188d2SZach Atkins PetscFunctionReturn(PETSC_SUCCESS); 228e8e188d2SZach Atkins } 229e8e188d2SZach Atkins 230e8e188d2SZach Atkins /*@ 231e8e188d2SZach Atkins DMPlexSetUseMatClosurePermutation - Set flag for using a closure permutation for matrix insertion 232e8e188d2SZach Atkins 233e8e188d2SZach Atkins Not collective 234e8e188d2SZach Atkins 235e8e188d2SZach Atkins Input Parameters: 236e8e188d2SZach Atkins + dm - The `DM` 237e8e188d2SZach Atkins - useClPerm - The flag 238e8e188d2SZach Atkins 239e8e188d2SZach Atkins Level: intermediate 240e8e188d2SZach Atkins 241e8e188d2SZach Atkins .seealso: `DMPlexGetUseMatClosurePermutation()` 242e8e188d2SZach Atkins @*/ 243e8e188d2SZach Atkins PetscErrorCode DMPlexSetUseMatClosurePermutation(DM dm, PetscBool useClPerm) 244e8e188d2SZach Atkins { 245e8e188d2SZach Atkins DM_Plex *mesh = (DM_Plex *)dm->data; 246e8e188d2SZach Atkins 247e8e188d2SZach Atkins PetscFunctionBegin; 248e8e188d2SZach Atkins PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 249e8e188d2SZach Atkins PetscValidLogicalCollectiveBool(dm, useClPerm, 2); 250e8e188d2SZach Atkins mesh->useMatClPerm = useClPerm; 251e8e188d2SZach Atkins PetscFunctionReturn(PETSC_SUCCESS); 252e8e188d2SZach Atkins } 253e8e188d2SZach Atkins 254d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx) 255d71ae5a4SJacob Faibussowitsch { 2569371c9d4SSatish Balay const PetscInt eps[3][3][3] = { 2579371c9d4SSatish Balay {{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, 2589371c9d4SSatish Balay {{0, 0, -1}, {0, 0, 0}, {1, 0, 0} }, 2599371c9d4SSatish Balay {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0} } 2609371c9d4SSatish Balay }; 261026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *)ctx; 262ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 263026175e5SToby Isaac PetscInt d = ctxInt[1]; 264026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 265026175e5SToby Isaac 266ad917190SMatthew G. Knepley PetscFunctionBegin; 26763a3b9bcSJacob Faibussowitsch PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2); 268026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 269026175e5SToby Isaac if (d < dim) { 27012adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 271ad917190SMatthew G. Knepley } else { 272026175e5SToby Isaac for (i = 0; i < dim; i++) { 2739371c9d4SSatish Balay for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ } 274026175e5SToby Isaac } 275026175e5SToby Isaac } 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277026175e5SToby Isaac } 278026175e5SToby Isaac 279cc4e42d9SMartin Diehl /*@ 28012adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 281cb1e1211SMatthew G Knepley 28220f4b53cSBarry Smith Collective 283cb1e1211SMatthew G Knepley 2844165533cSJose E. Roman Input Parameters: 285a1cb98faSBarry Smith + dm - the `DM` 28656cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default 287cb1e1211SMatthew G Knepley 2884165533cSJose E. Roman Output Parameter: 289cb1e1211SMatthew G Knepley . sp - the null space 290cb1e1211SMatthew G Knepley 291cb1e1211SMatthew G Knepley Level: advanced 292cb1e1211SMatthew G Knepley 293a1cb98faSBarry Smith Note: 294a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 295a1cb98faSBarry Smith 2961cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG` 297cb1e1211SMatthew G Knepley @*/ 298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp) 299d71ae5a4SJacob Faibussowitsch { 30056cf3b9cSMatthew G. Knepley PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *); 301cb1e1211SMatthew G Knepley MPI_Comm comm; 302026175e5SToby Isaac Vec mode[6]; 303026175e5SToby Isaac PetscSection section, globalSection; 30456cf3b9cSMatthew G. Knepley PetscInt dim, dimEmbed, Nf, n, m, mmin, d, i, j; 305db14aad5SMatthew G. Knepley void **ctxs; 306cb1e1211SMatthew G Knepley 307cb1e1211SMatthew G Knepley PetscFunctionBegin; 3089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3099566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3109566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 3119566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 31263a3b9bcSJacob Faibussowitsch PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf); 31356cf3b9cSMatthew G. Knepley if (dim == 1 && Nf < 2) { 3149566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp)); 3153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 316cb1e1211SMatthew G Knepley } 3179566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 3189566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 3199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 320db14aad5SMatthew G. Knepley PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs)); 321b247467aSMatthew G. Knepley m = (dim * (dim + 1)) / 2; 3229566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 3239566063dSJacob Faibussowitsch PetscCall(VecSetType(mode[0], dm->vectype)); 3249566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 3259566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 3269566063dSJacob Faibussowitsch PetscCall(VecGetSize(mode[0], &n)); 327b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 32856cf3b9cSMatthew G. Knepley func[field] = DMPlexProjectRigidBody_Private; 3299566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 330026175e5SToby Isaac for (d = 0; d < m; d++) { 331330485fdSToby Isaac PetscInt ctx[2]; 332cb1e1211SMatthew G Knepley 333db14aad5SMatthew G. Knepley ctxs[field] = (void *)(&ctx[0]); 3349d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 335330485fdSToby Isaac ctx[1] = d; 336db14aad5SMatthew G. Knepley PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d])); 337cb1e1211SMatthew G Knepley } 3383b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 339b50a2c0aSJacob Faibussowitsch for (i = 0; i < mmin; ++i) { 340b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 341b50a2c0aSJacob Faibussowitsch 3429566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 3439566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1)); 344b50a2c0aSJacob Faibussowitsch for (j = i + 1; j < mmin; ++j) { 345b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 3469566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 347b50a2c0aSJacob Faibussowitsch } 348cb1e1211SMatthew G Knepley } 3499566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp)); 3509566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 351db14aad5SMatthew G. Knepley PetscCall(PetscFree2(func, ctxs)); 3523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 353cb1e1211SMatthew G Knepley } 354cb1e1211SMatthew G Knepley 355cc4e42d9SMartin Diehl /*@ 35612adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 35712adca46SMatthew G. Knepley 35820f4b53cSBarry Smith Collective 35912adca46SMatthew G. Knepley 3604165533cSJose E. Roman Input Parameters: 361a1cb98faSBarry Smith + dm - the `DM` 36212adca46SMatthew G. Knepley . nb - The number of bodies 363a1cb98faSBarry Smith . label - The `DMLabel` marking each domain 36412adca46SMatthew G. Knepley . nids - The number of ids per body 36512adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 36612adca46SMatthew G. Knepley 3674165533cSJose E. Roman Output Parameter: 36812adca46SMatthew G. Knepley . sp - the null space 36912adca46SMatthew G. Knepley 37012adca46SMatthew G. Knepley Level: advanced 37112adca46SMatthew G. Knepley 372a1cb98faSBarry Smith Note: 373a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 374a1cb98faSBarry Smith 3751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()` 37612adca46SMatthew G. Knepley @*/ 377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 378d71ae5a4SJacob Faibussowitsch { 37912adca46SMatthew G. Knepley MPI_Comm comm; 38012adca46SMatthew G. Knepley PetscSection section, globalSection; 38112adca46SMatthew G. Knepley Vec *mode; 38212adca46SMatthew G. Knepley PetscScalar *dots; 38312adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 38412adca46SMatthew G. Knepley 38512adca46SMatthew G. Knepley PetscFunctionBegin; 3869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3889566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 3899566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 3909566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 3919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 39212adca46SMatthew G. Knepley m = nb * (dim * (dim + 1)) / 2; 3939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &mode, m, &dots)); 3949566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 3959566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 3969566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 3979566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 39812adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 39912adca46SMatthew G. Knepley for (d = 0; d < m / nb; ++d) { 40012adca46SMatthew G. Knepley PetscInt ctx[2]; 40112adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 40212adca46SMatthew G. Knepley void *voidctx = (void *)(&ctx[0]); 40312adca46SMatthew G. Knepley 40412adca46SMatthew G. Knepley ctx[0] = dimEmbed; 40512adca46SMatthew G. Knepley ctx[1] = d; 4069566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d])); 40712adca46SMatthew G. Knepley off += nids[b]; 40812adca46SMatthew G. Knepley } 40912adca46SMatthew G. Knepley } 4103b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 411606c1a1cSJacob Faibussowitsch for (i = 0; i < m; ++i) { 412b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 4135a0e29b9SJacob Faibussowitsch 4149566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 4159566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1)); 4165a0e29b9SJacob Faibussowitsch for (j = i + 1; j < m; ++j) { 417b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 4189566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 4195a0e29b9SJacob Faibussowitsch } 42012adca46SMatthew G. Knepley } 4219566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp)); 4229566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 4239566063dSJacob Faibussowitsch PetscCall(PetscFree2(mode, dots)); 4243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42512adca46SMatthew G. Knepley } 42612adca46SMatthew G. Knepley 427b29cfa1cSToby Isaac /*@ 428b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 429b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 430a4e35b19SJacob Faibussowitsch evaluating the dual space basis of that point. 431b29cfa1cSToby Isaac 432b29cfa1cSToby Isaac Input Parameters: 433a1cb98faSBarry Smith + dm - the `DMPLEX` object 434b29cfa1cSToby Isaac - height - the maximum projection height >= 0 435b29cfa1cSToby Isaac 436b29cfa1cSToby Isaac Level: advanced 437b29cfa1cSToby Isaac 438a4e35b19SJacob Faibussowitsch Notes: 439a4e35b19SJacob Faibussowitsch A basis function is associated with the point in its transitively-closed support whose mesh 440a4e35b19SJacob Faibussowitsch height is highest (w.r.t. DAG height), but not greater than the maximum projection height, 441a4e35b19SJacob Faibussowitsch which is set with this function. By default, the maximum projection height is zero, which 442a4e35b19SJacob Faibussowitsch means that only mesh cells are used to project basis functions. A height of one, for 443a4e35b19SJacob Faibussowitsch example, evaluates a cell-interior basis functions using its cells dual space basis, but all 444a4e35b19SJacob Faibussowitsch other basis functions with the dual space basis of a face. 445a4e35b19SJacob Faibussowitsch 4461cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 447b29cfa1cSToby Isaac @*/ 448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 449d71ae5a4SJacob Faibussowitsch { 450b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 451b29cfa1cSToby Isaac 452b29cfa1cSToby Isaac PetscFunctionBegin; 453b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 454b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 4553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 456b29cfa1cSToby Isaac } 457b29cfa1cSToby Isaac 458b29cfa1cSToby Isaac /*@ 459b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 460b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 461b29cfa1cSToby Isaac 4622fe279fdSBarry Smith Input Parameter: 463a1cb98faSBarry Smith . dm - the `DMPLEX` object 464b29cfa1cSToby Isaac 4652fe279fdSBarry Smith Output Parameter: 466b29cfa1cSToby Isaac . height - the maximum projection height 467b29cfa1cSToby Isaac 468b29cfa1cSToby Isaac Level: intermediate 469b29cfa1cSToby Isaac 4701cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 471b29cfa1cSToby Isaac @*/ 472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 473d71ae5a4SJacob Faibussowitsch { 474b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 475b29cfa1cSToby Isaac 476b29cfa1cSToby Isaac PetscFunctionBegin; 477b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 478b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 4793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 480b29cfa1cSToby Isaac } 481b29cfa1cSToby Isaac 482ca3d3a14SMatthew G. Knepley typedef struct { 483ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 484ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 485ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 486ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 487ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 488ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 489ca3d3a14SMatthew G. Knepley } RotCtx; 490ca3d3a14SMatthew G. Knepley 491ca3d3a14SMatthew G. Knepley /* 492ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 493ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 494ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 495ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 496ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 497ca3d3a14SMatthew G. Knepley */ 498d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 499d71ae5a4SJacob Faibussowitsch { 500ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 501ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 502ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 503ca3d3a14SMatthew G. Knepley 504ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT)); 506ca3d3a14SMatthew G. Knepley switch (dim) { 507ca3d3a14SMatthew G. Knepley case 2: 5089371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 5099371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 5109371c9d4SSatish Balay rc->R[0] = c1; 5119371c9d4SSatish Balay rc->R[1] = s1; 5129371c9d4SSatish Balay rc->R[2] = -s1; 5139371c9d4SSatish Balay rc->R[3] = c1; 5149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 515b458e8f1SJose E. Roman DMPlex_Transpose2D_Internal(rc->RT); 516ca3d3a14SMatthew G. Knepley break; 517ca3d3a14SMatthew G. Knepley case 3: 5189371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 5199371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 5209371c9d4SSatish Balay c2 = PetscCosReal(rc->beta); 5219371c9d4SSatish Balay s2 = PetscSinReal(rc->beta); 5229371c9d4SSatish Balay c3 = PetscCosReal(rc->gamma); 5239371c9d4SSatish Balay s3 = PetscSinReal(rc->gamma); 5249371c9d4SSatish Balay rc->R[0] = c1 * c3 - c2 * s1 * s3; 5259371c9d4SSatish Balay rc->R[1] = c3 * s1 + c1 * c2 * s3; 5269371c9d4SSatish Balay rc->R[2] = s2 * s3; 5279371c9d4SSatish Balay rc->R[3] = -c1 * s3 - c2 * c3 * s1; 5289371c9d4SSatish Balay rc->R[4] = c1 * c2 * c3 - s1 * s3; 5299371c9d4SSatish Balay rc->R[5] = c3 * s2; 5309371c9d4SSatish Balay rc->R[6] = s1 * s2; 5319371c9d4SSatish Balay rc->R[7] = -c1 * s2; 5329371c9d4SSatish Balay rc->R[8] = c2; 5339566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 534b458e8f1SJose E. Roman DMPlex_Transpose3D_Internal(rc->RT); 535ca3d3a14SMatthew G. Knepley break; 536d71ae5a4SJacob Faibussowitsch default: 537d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim); 538ca3d3a14SMatthew G. Knepley } 5393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 540ca3d3a14SMatthew G. Knepley } 541ca3d3a14SMatthew G. Knepley 542d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 543d71ae5a4SJacob Faibussowitsch { 544ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 545ca3d3a14SMatthew G. Knepley 546ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(PetscFree2(rc->R, rc->RT)); 5489566063dSJacob Faibussowitsch PetscCall(PetscFree(rc)); 5493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 550ca3d3a14SMatthew G. Knepley } 551ca3d3a14SMatthew G. Knepley 552d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 553d71ae5a4SJacob Faibussowitsch { 554ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 555ca3d3a14SMatthew G. Knepley 556ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5574f572ea9SToby Isaac PetscAssertPointer(ctx, 5); 5589371c9d4SSatish Balay if (l2g) { 5599371c9d4SSatish Balay *A = rc->R; 5609371c9d4SSatish Balay } else { 5619371c9d4SSatish Balay *A = rc->RT; 5629371c9d4SSatish Balay } 5633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 564ca3d3a14SMatthew G. Knepley } 565ca3d3a14SMatthew G. Knepley 566d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 567d71ae5a4SJacob Faibussowitsch { 568ec277c0fSMatthew G. Knepley PetscFunctionBegin; 569ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 570ab6a9622SMatthew G. Knepley switch (dim) { 5719371c9d4SSatish Balay case 2: { 57227104ee2SJacob Faibussowitsch PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0}; 573ab6a9622SMatthew G. Knepley 5749566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 5759371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 5769371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 5779371c9d4SSatish Balay } break; 5789371c9d4SSatish Balay case 3: { 57927104ee2SJacob Faibussowitsch PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0}; 580ab6a9622SMatthew G. Knepley 5819566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 5829371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 5839371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 5849371c9d4SSatish Balay z[2] = PetscRealPart(zt[2]); 5859371c9d4SSatish Balay } break; 586ab6a9622SMatthew G. Knepley } 587ab6a9622SMatthew G. Knepley #else 5889566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx)); 589ab6a9622SMatthew G. Knepley #endif 5903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 591ab6a9622SMatthew G. Knepley } 592ab6a9622SMatthew G. Knepley 593d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 594d71ae5a4SJacob Faibussowitsch { 595ca3d3a14SMatthew G. Knepley const PetscScalar *A; 596ca3d3a14SMatthew G. Knepley 597ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5989566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx)); 599ca3d3a14SMatthew G. Knepley switch (dim) { 600d71ae5a4SJacob Faibussowitsch case 2: 601d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(A, 1, y, z); 602d71ae5a4SJacob Faibussowitsch break; 603d71ae5a4SJacob Faibussowitsch case 3: 604d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(A, 1, y, z); 605d71ae5a4SJacob Faibussowitsch break; 606ca3d3a14SMatthew G. Knepley } 6073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 608ca3d3a14SMatthew G. Knepley } 609ca3d3a14SMatthew G. Knepley 610d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 611d71ae5a4SJacob Faibussowitsch { 612ca3d3a14SMatthew G. Knepley PetscSection ts; 613ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 614ca3d3a14SMatthew G. Knepley PetscInt dof; 615ca3d3a14SMatthew G. Knepley 616ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 6179566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 6199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 6209566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva)); 621ca3d3a14SMatthew G. Knepley if (l2g) { 622ca3d3a14SMatthew G. Knepley switch (dof) { 623d71ae5a4SJacob Faibussowitsch case 4: 624d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(tva, 1, a, a); 625d71ae5a4SJacob Faibussowitsch break; 626d71ae5a4SJacob Faibussowitsch case 9: 627d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(tva, 1, a, a); 628d71ae5a4SJacob Faibussowitsch break; 629ca3d3a14SMatthew G. Knepley } 630ca3d3a14SMatthew G. Knepley } else { 631ca3d3a14SMatthew G. Knepley switch (dof) { 632d71ae5a4SJacob Faibussowitsch case 4: 633d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose2D_Internal(tva, 1, a, a); 634d71ae5a4SJacob Faibussowitsch break; 635d71ae5a4SJacob Faibussowitsch case 9: 636d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose3D_Internal(tva, 1, a, a); 637d71ae5a4SJacob Faibussowitsch break; 638ca3d3a14SMatthew G. Knepley } 639ca3d3a14SMatthew G. Knepley } 6409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 6413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 642ca3d3a14SMatthew G. Knepley } 643ca3d3a14SMatthew G. Knepley 644d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 645d71ae5a4SJacob Faibussowitsch { 646ca3d3a14SMatthew G. Knepley PetscSection s, ts; 647ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 648ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 649ca3d3a14SMatthew G. Knepley 650ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 6519566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6529566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof)); 6549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof)); 6559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof)); 6569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof)); 6579566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 6589566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf)); 6599566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag)); 660ca3d3a14SMatthew G. Knepley if (l2g) { 661ca3d3a14SMatthew G. Knepley switch (fdof) { 662d71ae5a4SJacob Faibussowitsch case 4: 663d71ae5a4SJacob Faibussowitsch DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a); 664d71ae5a4SJacob Faibussowitsch break; 665d71ae5a4SJacob Faibussowitsch case 9: 666d71ae5a4SJacob Faibussowitsch DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a); 667d71ae5a4SJacob Faibussowitsch break; 668ca3d3a14SMatthew G. Knepley } 669ca3d3a14SMatthew G. Knepley switch (gdof) { 670d71ae5a4SJacob Faibussowitsch case 4: 671d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a); 672d71ae5a4SJacob Faibussowitsch break; 673d71ae5a4SJacob Faibussowitsch case 9: 674d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a); 675d71ae5a4SJacob Faibussowitsch break; 676ca3d3a14SMatthew G. Knepley } 677ca3d3a14SMatthew G. Knepley } else { 678ca3d3a14SMatthew G. Knepley switch (fdof) { 679d71ae5a4SJacob Faibussowitsch case 4: 680d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a); 681d71ae5a4SJacob Faibussowitsch break; 682d71ae5a4SJacob Faibussowitsch case 9: 683d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a); 684d71ae5a4SJacob Faibussowitsch break; 685ca3d3a14SMatthew G. Knepley } 686ca3d3a14SMatthew G. Knepley switch (gdof) { 687d71ae5a4SJacob Faibussowitsch case 4: 688d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a); 689d71ae5a4SJacob Faibussowitsch break; 690d71ae5a4SJacob Faibussowitsch case 9: 691d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a); 692d71ae5a4SJacob Faibussowitsch break; 693ca3d3a14SMatthew G. Knepley } 694ca3d3a14SMatthew G. Knepley } 6959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 6963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 697ca3d3a14SMatthew G. Knepley } 698ca3d3a14SMatthew G. Knepley 699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 700d71ae5a4SJacob Faibussowitsch { 701ca3d3a14SMatthew G. Knepley PetscSection s; 702ca3d3a14SMatthew G. Knepley PetscSection clSection; 703ca3d3a14SMatthew G. Knepley IS clPoints; 704ca3d3a14SMatthew G. Knepley const PetscInt *clp; 705ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 706ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 707ca3d3a14SMatthew G. Knepley 708ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 7099566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 7109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 71107218a29SMatthew G. Knepley PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp)); 712ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 713ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np * 2; cp += 2) { 7149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof)); 715ca3d3a14SMatthew G. Knepley if (!dof) continue; 7169566063dSJacob Faibussowitsch if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d])); 717ca3d3a14SMatthew G. Knepley d += dof; 718ca3d3a14SMatthew G. Knepley } 719ca3d3a14SMatthew G. Knepley } 7209566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 7213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 722ca3d3a14SMatthew G. Knepley } 723ca3d3a14SMatthew G. Knepley 724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 725d71ae5a4SJacob Faibussowitsch { 726ca3d3a14SMatthew G. Knepley PetscSection s; 727ca3d3a14SMatthew G. Knepley PetscSection clSection; 728ca3d3a14SMatthew G. Knepley IS clPoints; 729ca3d3a14SMatthew G. Knepley const PetscInt *clp; 730ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 7318bdb3c71SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0; 732ca3d3a14SMatthew G. Knepley 733ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 7349566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 7359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 73607218a29SMatthew G. Knepley PetscCall(DMPlexGetCompressedClosure(dm, s, p, 0, &Np, &points, &clSection, &clPoints, &clp)); 737ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 738ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np * 2; cpf += 2) { 7399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof)); 740ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 741ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np * 2; cpg += 2) { 7429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof)); 7439566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c])); 744ca3d3a14SMatthew G. Knepley c += gdof; 745ca3d3a14SMatthew G. Knepley } 746ca3d3a14SMatthew G. Knepley } 74763a3b9bcSJacob Faibussowitsch PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 748ca3d3a14SMatthew G. Knepley r += fdof; 749ca3d3a14SMatthew G. Knepley } 750ca3d3a14SMatthew G. Knepley } 75163a3b9bcSJacob Faibussowitsch PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 7529566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 7533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 754ca3d3a14SMatthew G. Knepley } 755ca3d3a14SMatthew G. Knepley 756d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 757d71ae5a4SJacob Faibussowitsch { 758ca3d3a14SMatthew G. Knepley DM tdm; 759ca3d3a14SMatthew G. Knepley Vec tv; 760ca3d3a14SMatthew G. Knepley PetscSection ts, s; 761ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 762ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 763ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 764ca3d3a14SMatthew G. Knepley 765ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 7669566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 7679566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 7689566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 7699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 7709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 7719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 7729566063dSJacob Faibussowitsch PetscCall(VecGetArray(lv, &a)); 7739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 774ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 775ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 7769566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va)); 7779566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va)); 778ca3d3a14SMatthew G. Knepley } 779ca3d3a14SMatthew G. Knepley } 7809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lv, &a)); 7819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 7823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 783ca3d3a14SMatthew G. Knepley } 784ca3d3a14SMatthew G. Knepley 785ca3d3a14SMatthew G. Knepley /*@ 786ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 787ca3d3a14SMatthew G. Knepley 788ca3d3a14SMatthew G. Knepley Input Parameters: 789a1cb98faSBarry Smith + dm - The `DM` 790ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 791ca3d3a14SMatthew G. Knepley 7922fe279fdSBarry Smith Output Parameter: 793ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 794ca3d3a14SMatthew G. Knepley 795ca3d3a14SMatthew G. Knepley Level: developer 796ca3d3a14SMatthew G. Knepley 797a1cb98faSBarry Smith Note: 798a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 799a1cb98faSBarry Smith 8001cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 801ca3d3a14SMatthew G. Knepley @*/ 802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 803d71ae5a4SJacob Faibussowitsch { 804ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 805ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 806ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 8079566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE)); 8083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 809ca3d3a14SMatthew G. Knepley } 810ca3d3a14SMatthew G. Knepley 811ca3d3a14SMatthew G. Knepley /*@ 812ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 813ca3d3a14SMatthew G. Knepley 814ca3d3a14SMatthew G. Knepley Input Parameters: 815a1cb98faSBarry Smith + dm - The `DM` 816ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 817ca3d3a14SMatthew G. Knepley 8182fe279fdSBarry Smith Output Parameter: 819ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 820ca3d3a14SMatthew G. Knepley 821ca3d3a14SMatthew G. Knepley Level: developer 822ca3d3a14SMatthew G. Knepley 823a1cb98faSBarry Smith Note: 824a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 825a1cb98faSBarry Smith 8261cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 827ca3d3a14SMatthew G. Knepley @*/ 828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 829d71ae5a4SJacob Faibussowitsch { 830ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 831ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 832ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 8339566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE)); 8343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 835ca3d3a14SMatthew G. Knepley } 836ca3d3a14SMatthew G. Knepley 837ca3d3a14SMatthew G. Knepley /*@ 838ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 839ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 840ca3d3a14SMatthew G. Knepley 841ca3d3a14SMatthew G. Knepley Input Parameters: 842a1cb98faSBarry Smith + dm - The `DM` 843ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 844ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 845f0fc11ceSJed Brown - gamma - The third Euler angle 846ca3d3a14SMatthew G. Knepley 847ca3d3a14SMatthew G. Knepley Level: developer 848ca3d3a14SMatthew G. Knepley 849a1cb98faSBarry Smith Note: 850a1cb98faSBarry Smith Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 851a1cb98faSBarry Smith we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows 852a1cb98faSBarry Smith .vb 853a1cb98faSBarry Smith The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 854a1cb98faSBarry Smith The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 855a1cb98faSBarry Smith The XYZ system rotates a third time about the z axis by gamma. 856a1cb98faSBarry Smith .ve 857a1cb98faSBarry Smith 8581cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()` 859ca3d3a14SMatthew G. Knepley @*/ 860d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 861d71ae5a4SJacob Faibussowitsch { 862ca3d3a14SMatthew G. Knepley RotCtx *rc; 863ca3d3a14SMatthew G. Knepley PetscInt cdim; 864ca3d3a14SMatthew G. Knepley 865362febeeSStefano Zampini PetscFunctionBegin; 8669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 8679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &rc)); 868ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 869ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 870ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 871ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 872ca3d3a14SMatthew G. Knepley rc->dim = cdim; 873ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 874ca3d3a14SMatthew G. Knepley rc->beta = beta; 875ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 8769566063dSJacob Faibussowitsch PetscCall((*dm->transformSetUp)(dm, dm->transformCtx)); 8779566063dSJacob Faibussowitsch PetscCall(DMConstructBasisTransform_Internal(dm)); 8783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 879ca3d3a14SMatthew G. Knepley } 880ca3d3a14SMatthew G. Knepley 881b278463cSMatthew G. Knepley /*@C 882ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates 883b278463cSMatthew G. Knepley 884b278463cSMatthew G. Knepley Input Parameters: 885a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 886b278463cSMatthew G. Knepley . time - The time 887b278463cSMatthew G. Knepley . field - The field to constrain 8881c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 88920f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 890a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 891a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 892b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 893b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 894b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 895b278463cSMatthew G. Knepley 896b278463cSMatthew G. Knepley Output Parameter: 897b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 898b278463cSMatthew G. Knepley 899b278463cSMatthew G. Knepley Level: developer 900b278463cSMatthew G. Knepley 9011cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 902b278463cSMatthew G. Knepley @*/ 903d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 904d71ae5a4SJacob Faibussowitsch { 9050163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 90655f2e967SMatthew G. Knepley void **ctxs; 907d7ddef95SMatthew G. Knepley PetscInt numFields; 908d7ddef95SMatthew G. Knepley 909d7ddef95SMatthew G. Knepley PetscFunctionBegin; 9109566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 9119566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 912d7ddef95SMatthew G. Knepley funcs[field] = func; 913d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 9149566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX)); 9159566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917d7ddef95SMatthew G. Knepley } 918d7ddef95SMatthew G. Knepley 919b278463cSMatthew G. Knepley /*@C 920ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data 921b278463cSMatthew G. Knepley 922b278463cSMatthew G. Knepley Input Parameters: 923a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 924b278463cSMatthew G. Knepley . time - The time 925b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 926b278463cSMatthew G. Knepley . field - The field to constrain 9271c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 92820f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 929a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 930a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 931b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 932b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 933b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 934b278463cSMatthew G. Knepley 935b278463cSMatthew G. Knepley Output Parameter: 936b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 937b278463cSMatthew G. Knepley 938b278463cSMatthew G. Knepley Level: developer 939b278463cSMatthew G. Knepley 9401cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 941b278463cSMatthew G. Knepley @*/ 942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 943d71ae5a4SJacob Faibussowitsch { 9449371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 945c60e475cSMatthew G. Knepley void **ctxs; 946c60e475cSMatthew G. Knepley PetscInt numFields; 947c60e475cSMatthew G. Knepley 948c60e475cSMatthew G. Knepley PetscFunctionBegin; 9499566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 9509566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 951c60e475cSMatthew G. Knepley funcs[field] = func; 952c60e475cSMatthew G. Knepley ctxs[field] = ctx; 9539566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 9549566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 9553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 956c60e475cSMatthew G. Knepley } 957c60e475cSMatthew G. Knepley 958b278463cSMatthew G. Knepley /*@C 959d5b43468SJose E. Roman DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data 960ece3a9fcSMatthew G. Knepley 96120f4b53cSBarry Smith Collective 962ece3a9fcSMatthew G. Knepley 963ece3a9fcSMatthew G. Knepley Input Parameters: 964a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 965ece3a9fcSMatthew G. Knepley . time - The time 966ece3a9fcSMatthew G. Knepley . locU - A local vector with the input solution values 967ece3a9fcSMatthew G. Knepley . field - The field to constrain 968ece3a9fcSMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 96920f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 970a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 971a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 972ece3a9fcSMatthew G. Knepley . ids - An array of ids for constrained points 97320f4b53cSBarry Smith . func - A pointwise function giving boundary values, the calling sequence is given in `DMProjectBdFieldLabelLocal()` 97420f4b53cSBarry Smith - ctx - An optional user context for `func` 975ece3a9fcSMatthew G. Knepley 976ece3a9fcSMatthew G. Knepley Output Parameter: 977ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values 978ece3a9fcSMatthew G. Knepley 979ece3a9fcSMatthew G. Knepley Level: developer 980ece3a9fcSMatthew G. Knepley 9811cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 982ece3a9fcSMatthew G. Knepley @*/ 983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 984d71ae5a4SJacob Faibussowitsch { 9859371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 986ece3a9fcSMatthew G. Knepley void **ctxs; 987ece3a9fcSMatthew G. Knepley PetscInt numFields; 988ece3a9fcSMatthew G. Knepley 989ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 9909566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 9919566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 992ece3a9fcSMatthew G. Knepley funcs[field] = func; 993ece3a9fcSMatthew G. Knepley ctxs[field] = ctx; 9949566063dSJacob Faibussowitsch PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 9959566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 9963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 997ece3a9fcSMatthew G. Knepley } 998ece3a9fcSMatthew G. Knepley 999ece3a9fcSMatthew G. Knepley /*@C 1000b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 1001b278463cSMatthew G. Knepley 1002b278463cSMatthew G. Knepley Input Parameters: 1003a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 1004b278463cSMatthew G. Knepley . time - The time 1005b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 1006b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 1007b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 1008b278463cSMatthew G. Knepley . field - The field to constrain 10091c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 101020f4b53cSBarry Smith . comps - An array of constrained component numbers, or `NULL` for all components 1011a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 1012a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 1013b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 1014b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 1015b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 1016b278463cSMatthew G. Knepley 1017b278463cSMatthew G. Knepley Output Parameter: 1018b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 1019b278463cSMatthew G. Knepley 1020b278463cSMatthew G. Knepley Level: developer 1021b278463cSMatthew G. Knepley 1022a1cb98faSBarry Smith Note: 1023a1cb98faSBarry Smith This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()` 1024a1cb98faSBarry Smith 10251cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 1026b278463cSMatthew G. Knepley @*/ 1027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX) 1028d71ae5a4SJacob Faibussowitsch { 102961f58d28SMatthew G. Knepley PetscDS prob; 1030da97024aSMatthew G. Knepley PetscSF sf; 1031d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 103220369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 1033da97024aSMatthew G. Knepley const PetscInt *leaves; 1034d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 1035520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 10363ba16761SJacob Faibussowitsch PetscErrorCode ierru = PETSC_SUCCESS; 1037d7ddef95SMatthew G. Knepley 1038d7ddef95SMatthew G. Knepley PetscFunctionBegin; 10399566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 10409566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 1041da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 10429566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 10439566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 10449566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10459566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 10469566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 104720369375SToby Isaac if (cellGeometry) { 10489566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 10499566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 105020369375SToby Isaac } 1051d7ddef95SMatthew G. Knepley if (Grad) { 1052c0a6632aSMatthew G. Knepley PetscFV fv; 1053c0a6632aSMatthew G. Knepley 10549566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv)); 10559566063dSJacob Faibussowitsch PetscCall(VecGetDM(Grad, &dmGrad)); 10569566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Grad, &grad)); 10579566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 10589566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 1059d7ddef95SMatthew G. Knepley } 10609566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX, &x)); 1061d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 1062d7ddef95SMatthew G. Knepley IS faceIS; 1063d7ddef95SMatthew G. Knepley const PetscInt *faces; 1064d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 1065d7ddef95SMatthew G. Knepley 10669566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS)); 1067d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 10689566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 10699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 1070d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 1071d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 1072640bce14SSatish Balay PetscFVFaceGeom *fg; 1073d7ddef95SMatthew G. Knepley 1074d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 10759566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc)); 1076da97024aSMatthew G. Knepley if (loc >= 0) continue; 10779566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 10789566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 1079d7ddef95SMatthew G. Knepley if (Grad) { 1080640bce14SSatish Balay PetscFVCellGeom *cg; 1081640bce14SSatish Balay PetscScalar *cx, *cgrad; 1082d7ddef95SMatthew G. Knepley PetscScalar *xG; 1083d7ddef95SMatthew G. Knepley PetscReal dx[3]; 1084d7ddef95SMatthew G. Knepley PetscInt d; 1085d7ddef95SMatthew G. Knepley 10869566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg)); 10879566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx)); 10889566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad)); 10899566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 1090d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 1091d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx); 10929566063dSJacob Faibussowitsch PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx)); 1093d7ddef95SMatthew G. Knepley } else { 1094640bce14SSatish Balay PetscScalar *xI; 1095d7ddef95SMatthew G. Knepley PetscScalar *xG; 1096d7ddef95SMatthew G. Knepley 10979566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI)); 10989566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 1099e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 1100e735a8a9SMatthew G. Knepley if (ierru) { 11019566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 11029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 1103e735a8a9SMatthew G. Knepley goto cleanup; 1104e735a8a9SMatthew G. Knepley } 1105d7ddef95SMatthew G. Knepley } 1106d7ddef95SMatthew G. Knepley } 11079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 11089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 1109d7ddef95SMatthew G. Knepley } 1110e735a8a9SMatthew G. Knepley cleanup: 11119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX, &x)); 1112d7ddef95SMatthew G. Knepley if (Grad) { 11139566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 11149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Grad, &grad)); 1115d7ddef95SMatthew G. Knepley } 11169566063dSJacob Faibussowitsch if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 11179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 11189566063dSJacob Faibussowitsch PetscCall(ierru); 11193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1120d7ddef95SMatthew G. Knepley } 1121d7ddef95SMatthew G. Knepley 1122d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 1123d71ae5a4SJacob Faibussowitsch { 11240c364540SMatthew G. Knepley PetscInt c; 11250c364540SMatthew G. Knepley for (c = 0; c < Nc; ++c) u[c] = 0.0; 11263ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 11270c364540SMatthew G. Knepley } 11280c364540SMatthew G. Knepley 1129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1130d71ae5a4SJacob Faibussowitsch { 11310c364540SMatthew G. Knepley PetscObject isZero; 1132e5e52638SMatthew G. Knepley PetscDS prob; 1133d7ddef95SMatthew G. Knepley PetscInt numBd, b; 113455f2e967SMatthew G. Knepley 113555f2e967SMatthew G. Knepley PetscFunctionBegin; 11369566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 11379566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 11389566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 1139450c7a9fSMatthew G. Knepley PetscCall(PetscDSUpdateBoundaryLabels(prob, dm)); 114055f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 114145480ffeSMatthew G. Knepley PetscWeakForm wf; 1142f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 114345480ffeSMatthew G. Knepley const char *name; 1144d7ddef95SMatthew G. Knepley DMLabel label; 11451c531cf8SMatthew G. Knepley PetscInt field, Nc; 11461c531cf8SMatthew G. Knepley const PetscInt *comps; 1147d7ddef95SMatthew G. Knepley PetscObject obj; 1148d7ddef95SMatthew G. Knepley PetscClassId id; 114945480ffeSMatthew G. Knepley void (*bvfunc)(void); 1150d7ddef95SMatthew G. Knepley PetscInt numids; 1151d7ddef95SMatthew G. Knepley const PetscInt *ids; 115255f2e967SMatthew G. Knepley void *ctx; 115355f2e967SMatthew G. Knepley 11549566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 1155f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 11569566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 11579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1158d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1159c60e475cSMatthew G. Knepley switch (type) { 1160c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 11619371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 11628434afd1SBarry Smith PetscSimplePointFn *func = (PetscSimplePointFn *)bvfunc; 116345480ffeSMatthew G. Knepley 116445480ffeSMatthew G. Knepley if (isZero) func = zero; 11659566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11669566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX)); 11679566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11689371c9d4SSatish Balay } break; 11699371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 11702192575eSBarry Smith PetscPointFn *func = (PetscPointFn *)bvfunc; 117145480ffeSMatthew G. Knepley 11729566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11739566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX)); 11749566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11759371c9d4SSatish Balay } break; 1176d71ae5a4SJacob Faibussowitsch default: 1177d71ae5a4SJacob Faibussowitsch break; 1178c60e475cSMatthew G. Knepley } 1179d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 118045480ffeSMatthew G. Knepley { 118145480ffeSMatthew G. Knepley PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode (*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc; 118245480ffeSMatthew G. Knepley 118343ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 11849566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX)); 118545480ffeSMatthew G. Knepley } 118663a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 118755f2e967SMatthew G. Knepley } 11883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 118955f2e967SMatthew G. Knepley } 119055f2e967SMatthew G. Knepley 1191d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1192d71ae5a4SJacob Faibussowitsch { 119356cf3b9cSMatthew G. Knepley PetscObject isZero; 119456cf3b9cSMatthew G. Knepley PetscDS prob; 119556cf3b9cSMatthew G. Knepley PetscInt numBd, b; 119656cf3b9cSMatthew G. Knepley 119756cf3b9cSMatthew G. Knepley PetscFunctionBegin; 11983ba16761SJacob Faibussowitsch if (!locX) PetscFunctionReturn(PETSC_SUCCESS); 11999566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 12009566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 12019566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 120256cf3b9cSMatthew G. Knepley for (b = 0; b < numBd; ++b) { 120345480ffeSMatthew G. Knepley PetscWeakForm wf; 120456cf3b9cSMatthew G. Knepley DMBoundaryConditionType type; 120545480ffeSMatthew G. Knepley const char *name; 120656cf3b9cSMatthew G. Knepley DMLabel label; 120756cf3b9cSMatthew G. Knepley PetscInt field, Nc; 120856cf3b9cSMatthew G. Knepley const PetscInt *comps; 120956cf3b9cSMatthew G. Knepley PetscObject obj; 121056cf3b9cSMatthew G. Knepley PetscClassId id; 121156cf3b9cSMatthew G. Knepley PetscInt numids; 121256cf3b9cSMatthew G. Knepley const PetscInt *ids; 121345480ffeSMatthew G. Knepley void (*bvfunc)(void); 121456cf3b9cSMatthew G. Knepley void *ctx; 121556cf3b9cSMatthew G. Knepley 12169566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx)); 121756cf3b9cSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 12189566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 122056cf3b9cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 122156cf3b9cSMatthew G. Knepley switch (type) { 122256cf3b9cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 12239371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 12248434afd1SBarry Smith PetscSimplePointFn *func_t = (PetscSimplePointFn *)bvfunc; 122545480ffeSMatthew G. Knepley 122645480ffeSMatthew G. Knepley if (isZero) func_t = zero; 12279566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 12289566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 12299566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 12309371c9d4SSatish Balay } break; 12319371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 12322192575eSBarry Smith PetscPointFn *func_t = (PetscPointFn *)bvfunc; 123345480ffeSMatthew G. Knepley 12349566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 12359566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 12369566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 12379371c9d4SSatish Balay } break; 1238d71ae5a4SJacob Faibussowitsch default: 1239d71ae5a4SJacob Faibussowitsch break; 124056cf3b9cSMatthew G. Knepley } 124163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 124256cf3b9cSMatthew G. Knepley } 12433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 124456cf3b9cSMatthew G. Knepley } 124556cf3b9cSMatthew G. Knepley 124601468941SMatthew G. Knepley PetscErrorCode DMPlexInsertBounds_Plex(DM dm, PetscBool lower, PetscReal time, Vec locB) 124701468941SMatthew G. Knepley { 124801468941SMatthew G. Knepley PetscDS ds; 124901468941SMatthew G. Knepley PetscInt numBd; 125001468941SMatthew G. Knepley 125101468941SMatthew G. Knepley PetscFunctionBegin; 125201468941SMatthew G. Knepley PetscCall(DMGetDS(dm, &ds)); 125301468941SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(ds, &numBd)); 125401468941SMatthew G. Knepley PetscCall(PetscDSUpdateBoundaryLabels(ds, dm)); 125501468941SMatthew G. Knepley for (PetscInt b = 0; b < numBd; ++b) { 125601468941SMatthew G. Knepley PetscWeakForm wf; 125701468941SMatthew G. Knepley DMBoundaryConditionType type; 125801468941SMatthew G. Knepley const char *name; 125901468941SMatthew G. Knepley DMLabel label; 126001468941SMatthew G. Knepley PetscInt numids; 126101468941SMatthew G. Knepley const PetscInt *ids; 126201468941SMatthew G. Knepley PetscInt field, Nc; 126301468941SMatthew G. Knepley const PetscInt *comps; 126401468941SMatthew G. Knepley void (*bvfunc)(void); 126501468941SMatthew G. Knepley void *ctx; 126601468941SMatthew G. Knepley 126701468941SMatthew G. Knepley PetscCall(PetscDSGetBoundary(ds, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 126801468941SMatthew G. Knepley if (lower && type != DM_BC_LOWER_BOUND) continue; 126901468941SMatthew G. Knepley if (!lower && type != DM_BC_UPPER_BOUND) continue; 127001468941SMatthew G. Knepley PetscCall(DMPlexLabelAddCells(dm, label)); 127101468941SMatthew G. Knepley { 127201468941SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 127301468941SMatthew G. Knepley void **ctxs; 127401468941SMatthew G. Knepley PetscInt Nf; 127501468941SMatthew G. Knepley 127601468941SMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 127701468941SMatthew G. Knepley PetscCall(PetscCalloc2(Nf, &funcs, Nf, &ctxs)); 127801468941SMatthew G. Knepley funcs[field] = (PetscSimplePointFn *)bvfunc; 127901468941SMatthew G. Knepley ctxs[field] = ctx; 128001468941SMatthew G. Knepley PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_ALL_VALUES, locB)); 128101468941SMatthew G. Knepley PetscCall(PetscFree2(funcs, ctxs)); 128201468941SMatthew G. Knepley } 128301468941SMatthew G. Knepley PetscCall(DMPlexLabelClearCells(dm, label)); 128401468941SMatthew G. Knepley } 128501468941SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 128601468941SMatthew G. Knepley } 128701468941SMatthew G. Knepley 1288f1d73a7aSMatthew G. Knepley /*@ 1289f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 1290f1d73a7aSMatthew G. Knepley 1291ed808b8fSJed Brown Not Collective 1292ed808b8fSJed Brown 1293f1d73a7aSMatthew G. Knepley Input Parameters: 1294a1cb98faSBarry Smith + dm - The `DM` 1295f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 1296f1d73a7aSMatthew G. Knepley . time - The time 1297f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 1298f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 1299f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 1300f1d73a7aSMatthew G. Knepley 13012fe279fdSBarry Smith Output Parameter: 1302f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 1303f1d73a7aSMatthew G. Knepley 1304ed808b8fSJed Brown Level: intermediate 1305f1d73a7aSMatthew G. Knepley 13061cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()` 1307f1d73a7aSMatthew G. Knepley @*/ 1308d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1309d71ae5a4SJacob Faibussowitsch { 1310f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1311f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1312064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 1313ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1314ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1315ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 1316cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM)); 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1318f1d73a7aSMatthew G. Knepley } 1319f1d73a7aSMatthew G. Knepley 132056cf3b9cSMatthew G. Knepley /*@ 1321a5b23f4aSJose E. Roman DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector 132256cf3b9cSMatthew G. Knepley 132356cf3b9cSMatthew G. Knepley Input Parameters: 1324a1cb98faSBarry Smith + dm - The `DM` 132556cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 132656cf3b9cSMatthew G. Knepley . time - The time 132756cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 132856cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 132956cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 133056cf3b9cSMatthew G. Knepley 13312fe279fdSBarry Smith Output Parameter: 133256cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values 133356cf3b9cSMatthew G. Knepley 133456cf3b9cSMatthew G. Knepley Level: developer 133556cf3b9cSMatthew G. Knepley 13361cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()` 133756cf3b9cSMatthew G. Knepley @*/ 1338d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1339d71ae5a4SJacob Faibussowitsch { 134056cf3b9cSMatthew G. Knepley PetscFunctionBegin; 134156cf3b9cSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1342ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3); 1343ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1344ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1345ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 13466c51210dSStefano Zampini PetscTryMethod(dm, "DMPlexInsertTimeDerivativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM)); 13473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 134856cf3b9cSMatthew G. Knepley } 134956cf3b9cSMatthew G. Knepley 135001468941SMatthew G. Knepley /*@ 135101468941SMatthew G. Knepley DMPlexInsertBounds - Puts coefficients which represent solution bounds into the local bounds vector 135201468941SMatthew G. Knepley 135301468941SMatthew G. Knepley Not Collective 135401468941SMatthew G. Knepley 135501468941SMatthew G. Knepley Input Parameters: 135601468941SMatthew G. Knepley + dm - The `DM` 135701468941SMatthew G. Knepley . lower - If `PETSC_TRUE` use `DM_BC_LOWER_BOUND` conditions, otherwise use `DM_BC_UPPER_BOUND` 135801468941SMatthew G. Knepley - time - The time 135901468941SMatthew G. Knepley 136001468941SMatthew G. Knepley Output Parameter: 136101468941SMatthew G. Knepley . locB - Bounds vector updated with new bounds 136201468941SMatthew G. Knepley 136301468941SMatthew G. Knepley Level: intermediate 136401468941SMatthew G. Knepley 136501468941SMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `PetscDSAddBoundary()` 136601468941SMatthew G. Knepley @*/ 136701468941SMatthew G. Knepley PetscErrorCode DMPlexInsertBounds(DM dm, PetscBool lower, PetscReal time, Vec locB) 136801468941SMatthew G. Knepley { 136901468941SMatthew G. Knepley PetscFunctionBegin; 137001468941SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 137101468941SMatthew G. Knepley PetscValidHeaderSpecific(locB, VEC_CLASSID, 4); 137201468941SMatthew G. Knepley PetscTryMethod(dm, "DMPlexInsertBounds_C", (DM, PetscBool, PetscReal, Vec), (dm, lower, time, locB)); 137301468941SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 137401468941SMatthew G. Knepley } 137501468941SMatthew G. Knepley 13765962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values 13775962854dSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesFVM(DM dm, PetscFV fv, Vec locX, PetscReal time, Vec *locGradient) 13785962854dSMatthew G. Knepley { 13795962854dSMatthew G. Knepley DM dmGrad; 13805962854dSMatthew G. Knepley Vec cellGeometryFVM, faceGeometryFVM, locGrad = NULL; 13815962854dSMatthew G. Knepley 13825962854dSMatthew G. Knepley PetscFunctionBegin; 13835962854dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13845962854dSMatthew G. Knepley PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2); 13855962854dSMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 13865962854dSMatthew G. Knepley if (locGradient) { 13875962854dSMatthew G. Knepley PetscAssertPointer(locGradient, 5); 13885962854dSMatthew G. Knepley *locGradient = NULL; 13895962854dSMatthew G. Knepley } 13905962854dSMatthew G. Knepley PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 13915962854dSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 13925962854dSMatthew G. Knepley PetscCall(DMPlexGetGradientDM(dm, fv, &dmGrad)); 13935962854dSMatthew G. Knepley if (dmGrad) { 13945962854dSMatthew G. Knepley Vec grad; 13955962854dSMatthew G. Knepley PetscInt fStart, fEnd; 13965962854dSMatthew G. Knepley 13975962854dSMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 13985962854dSMatthew G. Knepley PetscCall(DMGetGlobalVector(dmGrad, &grad)); 13995962854dSMatthew G. Knepley PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 14005962854dSMatthew G. Knepley /* Communicate gradient values */ 14015962854dSMatthew G. Knepley PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 14025962854dSMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 14035962854dSMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 14045962854dSMatthew G. Knepley PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 14055962854dSMatthew G. Knepley } 14065962854dSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad)); 14075962854dSMatthew G. Knepley if (locGradient) *locGradient = locGrad; 14085962854dSMatthew G. Knepley else if (locGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 14095962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 14105962854dSMatthew G. Knepley } 14115962854dSMatthew G. Knepley 1412d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1413d71ae5a4SJacob Faibussowitsch { 1414574a98acSMatthew G. Knepley Vec localX; 1415574a98acSMatthew G. Knepley 1416574a98acSMatthew G. Knepley PetscFunctionBegin; 14179566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 14189566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL)); 14199566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 14209566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 14219566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff)); 14229566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1424574a98acSMatthew G. Knepley } 1425574a98acSMatthew G. Knepley 1426574a98acSMatthew G. Knepley /*@C 142760225df5SJacob Faibussowitsch DMPlexComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1428574a98acSMatthew G. Knepley 142920f4b53cSBarry Smith Collective 1430c0f8e1fdSMatthew G. Knepley 1431574a98acSMatthew G. Knepley Input Parameters: 1432a1cb98faSBarry Smith + dm - The `DM` 1433574a98acSMatthew G. Knepley . time - The time 1434574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 143520f4b53cSBarry Smith . ctxs - Optional array of contexts to pass to each function, or `NULL`. 1436574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1437574a98acSMatthew G. Knepley 1438574a98acSMatthew G. Knepley Output Parameter: 1439574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1440574a98acSMatthew G. Knepley 1441574a98acSMatthew G. Knepley Level: developer 1442574a98acSMatthew G. Knepley 14431cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1444574a98acSMatthew G. Knepley @*/ 1445d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1446d71ae5a4SJacob Faibussowitsch { 14470f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1448ca3d3a14SMatthew G. Knepley DM tdm; 1449ca3d3a14SMatthew G. Knepley Vec tv; 1450cb1e1211SMatthew G Knepley PetscSection section; 1451c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 14524bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 145315496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 14544bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 1455cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 14567318780aSToby Isaac const PetscReal *quadWeights; 1457412e9a14SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset; 1458ca3d3a14SMatthew G. Knepley PetscBool transform; 1459cb1e1211SMatthew G Knepley 1460cb1e1211SMatthew G Knepley PetscFunctionBegin; 14619566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 14629566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 14632a4e142eSMatthew G. Knepley fegeom.dimEmbed = coordDim; 14649566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 14659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 14669566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 14679566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 14689566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1469eae3dc7dSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 1470cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 147115496722SMatthew G. Knepley PetscObject obj; 147215496722SMatthew G. Knepley PetscClassId id; 1473c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1474c5bbbd5bSMatthew G. Knepley 14759566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 14769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 147715496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 147815496722SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 147915496722SMatthew G. Knepley 14809566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 14819566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 148215496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 148315496722SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 148415496722SMatthew G. Knepley 14859566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 14869566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 148763a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1488c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1489cb1e1211SMatthew G Knepley } 14909566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 149163a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 1492c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 14939566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 14949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 1495cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1496a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1497cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 14989c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1499cb1e1211SMatthew G Knepley 15009566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 1501e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x)); 1502cb1e1211SMatthew G Knepley 150315496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 150415496722SMatthew G. Knepley PetscObject obj; 150515496722SMatthew G. Knepley PetscClassId id; 1506c110b1eeSGeoffrey Irving void *const ctx = ctxs ? ctxs[field] : NULL; 150715496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1508cb1e1211SMatthew G Knepley 15099566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 15109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 15119371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 15129371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 15139371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 15149371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 15159371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 15169371c9d4SSatish Balay Nb = 1; 15179371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1518cb1e1211SMatthew G Knepley if (debug) { 1519cb1e1211SMatthew G Knepley char title[1024]; 152063a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 15219566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1522cb1e1211SMatthew G Knepley } 15237318780aSToby Isaac for (q = 0; q < Nq; ++q) { 15242a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1525d0609cedSBarry Smith PetscErrorCode ierr; 15262a4e142eSMatthew G. Knepley 15272a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 15282a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 15292a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 15302a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 153163a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1532d3a7d86cSMatthew G. Knepley if (transform) { 1533d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 15349566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1535d3a7d86cSMatthew G. Knepley } else { 1536d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1537d3a7d86cSMatthew G. Knepley } 15389566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 1539ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1540e735a8a9SMatthew G. Knepley if (ierr) { 15419566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 15429566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 15439566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1544e735a8a9SMatthew G. Knepley } 15459566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 15469566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 15479566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 15482df84da0SMatthew G. Knepley else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 154915496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1550beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 15519371c9d4SSatish Balay if (debug) 1552835f2295SStefano Zampini PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0), 15539371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc]))); 15544bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1555cb1e1211SMatthew G Knepley } 1556cb1e1211SMatthew G Knepley } 15579c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1558beaa55a6SMatthew G. Knepley qc += Nc; 1559cb1e1211SMatthew G Knepley } 15609566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 15619566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 1562cb1e1211SMatthew G Knepley localDiff += elemDiff; 1563cb1e1211SMatthew G Knepley } 15649566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1565462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 1566cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 15673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1568cb1e1211SMatthew G Knepley } 1569cb1e1211SMatthew G Knepley 1570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1571d71ae5a4SJacob Faibussowitsch { 15720f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1573ca3d3a14SMatthew G. Knepley DM tdm; 1574cb1e1211SMatthew G Knepley PetscSection section; 157540e14135SMatthew G. Knepley PetscQuadrature quad; 1576ca3d3a14SMatthew G. Knepley Vec localX, tv; 15779c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 15782a4e142eSMatthew G. Knepley const PetscReal *quadWeights; 15794bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 15804bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 158140e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 1582485ad865SMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset; 1583ca3d3a14SMatthew G. Knepley PetscBool transform; 1584cb1e1211SMatthew G Knepley 1585cb1e1211SMatthew G Knepley PetscFunctionBegin; 15869566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 15879566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 15884bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 15899566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 15909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 15919566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 15929566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 15939566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 15949566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 15959566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 15969566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1597652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 15980f2d7e86SMatthew G. Knepley PetscFE fe; 159940e14135SMatthew G. Knepley PetscInt Nc; 1600652b88e8SMatthew G. Knepley 16019566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 16029566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 16039566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 160440e14135SMatthew G. Knepley numComponents += Nc; 1605652b88e8SMatthew G. Knepley } 16069566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 160763a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 16089566063dSJacob Faibussowitsch /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */ 1609c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ)); 16109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 161140e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 161240e14135SMatthew G. Knepley PetscScalar *x = NULL; 161340e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 16149c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1615652b88e8SMatthew G. Knepley 16169566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 1617e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x)); 161840e14135SMatthew G. Knepley 16199c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 16200f2d7e86SMatthew G. Knepley PetscFE fe; 162151259fa3SMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 16229c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 162340e14135SMatthew G. Knepley 16249566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 16259566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 16269566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 162740e14135SMatthew G. Knepley if (debug) { 162840e14135SMatthew G. Knepley char title[1024]; 16299566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 16309566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1631652b88e8SMatthew G. Knepley } 16329c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 16332a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1634d0609cedSBarry Smith PetscErrorCode ierr; 16352a4e142eSMatthew G. Knepley 16362a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 16372a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 16382a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 16392a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 16402df84da0SMatthew G. Knepley PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1641d3a7d86cSMatthew G. Knepley if (transform) { 1642d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 16439566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1644d3a7d86cSMatthew G. Knepley } else { 1645d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1646d3a7d86cSMatthew G. Knepley } 16479566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 16484bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx); 1649e735a8a9SMatthew G. Knepley if (ierr) { 16509566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 16519566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 16529566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 1653e735a8a9SMatthew G. Knepley } 16549566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 16559566063dSJacob Faibussowitsch PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant)); 16564bee2e38SMatthew G. Knepley /* Overwrite with the dot product if the normal is given */ 16574bee2e38SMatthew G. Knepley if (n) { 16584bee2e38SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 16594bee2e38SMatthew G. Knepley PetscScalar sum = 0.0; 16604bee2e38SMatthew G. Knepley PetscInt d; 16614bee2e38SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d]; 16624bee2e38SMatthew G. Knepley interpolant[fc] = sum; 16634bee2e38SMatthew G. Knepley } 16644bee2e38SMatthew G. Knepley } 16659c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1666beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 166763a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 16684bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 166940e14135SMatthew G. Knepley } 167040e14135SMatthew G. Knepley } 16719c3cf19fSMatthew G. Knepley fieldOffset += Nb; 16729c3cf19fSMatthew G. Knepley qc += Nc; 167340e14135SMatthew G. Knepley } 16749566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 167563a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 167640e14135SMatthew G. Knepley localDiff += elemDiff; 167740e14135SMatthew G. Knepley } 16789566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 16799566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1680462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 168140e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 16823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1683cb1e1211SMatthew G Knepley } 1684cb1e1211SMatthew G Knepley 1685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1686d71ae5a4SJacob Faibussowitsch { 16870f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1688ca3d3a14SMatthew G. Knepley DM tdm; 1689083401c6SMatthew G. Knepley DMLabel depthLabel; 169073d901b8SMatthew G. Knepley PetscSection section; 1691ca3d3a14SMatthew G. Knepley Vec localX, tv; 169273d901b8SMatthew G. Knepley PetscReal *localDiff; 1693083401c6SMatthew G. Knepley PetscInt dim, depth, dE, Nf, f, Nds, s; 1694ca3d3a14SMatthew G. Knepley PetscBool transform; 169573d901b8SMatthew G. Knepley 169673d901b8SMatthew G. Knepley PetscFunctionBegin; 16979566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16989566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 16999566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 17009566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 17019566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 17029566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 17039566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 17049566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 17059566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 17069566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(depthLabel, &depth)); 1707083401c6SMatthew G. Knepley 17089566063dSJacob Faibussowitsch PetscCall(VecSet(localX, 0.0)); 17099566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 17109566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 17119566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 17129566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 17139566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nf, &localDiff)); 1714083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1715083401c6SMatthew G. Knepley PetscDS ds; 1716083401c6SMatthew G. Knepley DMLabel label; 1717083401c6SMatthew G. Knepley IS fieldIS, pointIS; 1718083401c6SMatthew G. Knepley const PetscInt *fields, *points = NULL; 1719083401c6SMatthew G. Knepley PetscQuadrature quad; 1720083401c6SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1721083401c6SMatthew G. Knepley PetscFEGeom fegeom; 1722083401c6SMatthew G. Knepley PetscReal *coords, *gcoords; 1723083401c6SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 17245fedec97SMatthew G. Knepley PetscBool isCohesive; 1725083401c6SMatthew G. Knepley PetscInt qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf; 172673d901b8SMatthew G. Knepley 172707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 17289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 17299566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 17309566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 17319566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(ds, &totNc)); 17329566063dSJacob Faibussowitsch PetscCall(PetscDSGetQuadrature(ds, &quad)); 17339566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 173463a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc); 17359566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ)); 1736083401c6SMatthew G. Knepley if (!label) { 17379566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1738083401c6SMatthew G. Knepley } else { 17399566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 17409566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &cEnd)); 17419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 1742083401c6SMatthew G. Knepley } 174373d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1744083401c6SMatthew G. Knepley const PetscInt cell = points ? points[c] : c; 174573d901b8SMatthew G. Knepley PetscScalar *x = NULL; 17465fedec97SMatthew G. Knepley const PetscInt *cone; 17475fedec97SMatthew G. Knepley PetscInt qc = 0, fOff = 0, dep; 174873d901b8SMatthew G. Knepley 17499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, cell, &dep)); 1750083401c6SMatthew G. Knepley if (dep != depth - 1) continue; 17515fedec97SMatthew G. Knepley if (isCohesive) { 17529566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 17539566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 175496959cd1SMatthew G. Knepley } else { 17559566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 175696959cd1SMatthew G. Knepley } 1757e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, cell, 0, NULL, &x)); 17585fedec97SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 175915496722SMatthew G. Knepley PetscObject obj; 176015496722SMatthew G. Knepley PetscClassId id; 1761083401c6SMatthew G. Knepley void *const ctx = ctxs ? ctxs[fields[f]] : NULL; 176215496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 176315496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 17645fedec97SMatthew G. Knepley PetscBool cohesive; 176515496722SMatthew G. Knepley 17669566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 17679566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 17689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 17699371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 17709371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 17719371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 17729371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 17739371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 17749371c9d4SSatish Balay Nb = 1; 17759371c9d4SSatish Balay } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 1776c82db6dbSMatthew G. Knepley if (isCohesive && !cohesive) { 1777c82db6dbSMatthew G. Knepley fOff += Nb * 2; 1778c82db6dbSMatthew G. Knepley qc += Nc; 1779c82db6dbSMatthew G. Knepley continue; 1780c82db6dbSMatthew G. Knepley } 178173d901b8SMatthew G. Knepley if (debug) { 178273d901b8SMatthew G. Knepley char title[1024]; 178363a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f])); 17849566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff])); 178573d901b8SMatthew G. Knepley } 17867318780aSToby Isaac for (q = 0; q < Nq; ++q) { 17872a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1788d0609cedSBarry Smith PetscErrorCode ierr; 17892a4e142eSMatthew G. Knepley 17902a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 1791083401c6SMatthew G. Knepley qgeom.J = &fegeom.J[q * dE * dE]; 1792083401c6SMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * dE * dE]; 17932a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 179463a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 1795d3a7d86cSMatthew G. Knepley if (transform) { 1796083401c6SMatthew G. Knepley gcoords = &coords[dE * Nq]; 17979566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx)); 1798d3a7d86cSMatthew G. Knepley } else { 1799083401c6SMatthew G. Knepley gcoords = &coords[dE * q]; 1800d3a7d86cSMatthew G. Knepley } 18012df84da0SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.; 1802083401c6SMatthew G. Knepley ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx); 1803e735a8a9SMatthew G. Knepley if (ierr) { 18049566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 18059566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 18069566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1807e735a8a9SMatthew G. Knepley } 18089566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 180996959cd1SMatthew G. Knepley /* Call once for each face, except for lagrange field */ 18109566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant)); 18119566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant)); 181263a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 181315496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1814beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 18159371c9d4SSatish Balay if (debug) 1816835f2295SStefano Zampini PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0), (double)(dE > 1 ? coords[dE * q + 1] : 0), (double)(dE > 2 ? coords[dE * q + 2] : 0), 18179371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 18184bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 181973d901b8SMatthew G. Knepley } 182073d901b8SMatthew G. Knepley } 1821083401c6SMatthew G. Knepley fOff += Nb; 18229c3cf19fSMatthew G. Knepley qc += Nc; 1823083401c6SMatthew G. Knepley localDiff[fields[f]] += elemDiff; 182463a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]])); 182573d901b8SMatthew G. Knepley } 18269566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 1827083401c6SMatthew G. Knepley } 1828083401c6SMatthew G. Knepley if (label) { 18299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 18309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1831083401c6SMatthew G. Knepley } 18329566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 18339566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 183473d901b8SMatthew G. Knepley } 18359566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1836e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 18379566063dSJacob Faibussowitsch PetscCall(PetscFree(localDiff)); 1838083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]); 18393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 184073d901b8SMatthew G. Knepley } 184173d901b8SMatthew G. Knepley 1842e729f68cSMatthew G. Knepley /*@C 1843e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1844e729f68cSMatthew G. Knepley 184520f4b53cSBarry Smith Collective 1846c0f8e1fdSMatthew G. Knepley 1847e729f68cSMatthew G. Knepley Input Parameters: 1848a1cb98faSBarry Smith + dm - The `DM` 18490163fd50SMatthew G. Knepley . time - The time 185020f4b53cSBarry Smith . funcs - The functions to evaluate for each field component: `NULL` means that component does not contribute to error calculation 185120f4b53cSBarry Smith . ctxs - Optional array of contexts to pass to each function, or `NULL`. 1852e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1853e729f68cSMatthew G. Knepley 1854e729f68cSMatthew G. Knepley Output Parameter: 185520f4b53cSBarry Smith . D - A `Vec` which holds the difference ||u - u_h||_2 for each cell 1856e729f68cSMatthew G. Knepley 1857e729f68cSMatthew G. Knepley Level: developer 1858e729f68cSMatthew G. Knepley 18591cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1860e729f68cSMatthew G. Knepley @*/ 1861d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1862d71ae5a4SJacob Faibussowitsch { 1863e729f68cSMatthew G. Knepley PetscSection section; 1864e729f68cSMatthew G. Knepley PetscQuadrature quad; 1865e729f68cSMatthew G. Knepley Vec localX; 18664bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 1867e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 18684bee2e38SMatthew G. Knepley PetscReal *coords; 1869e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1870485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset; 1871e729f68cSMatthew G. Knepley 1872e729f68cSMatthew G. Knepley PetscFunctionBegin; 18739566063dSJacob Faibussowitsch PetscCall(VecSet(D, 0.0)); 18749566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18759566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 18769566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 18779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 18789566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 18799566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 18809566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 18819566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 1882e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1883e729f68cSMatthew G. Knepley PetscObject obj; 1884e729f68cSMatthew G. Knepley PetscClassId id; 1885e729f68cSMatthew G. Knepley PetscInt Nc; 1886e729f68cSMatthew G. Knepley 18879566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 18889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1889e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1890e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 1891e729f68cSMatthew G. Knepley 18929566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 18939566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 1894e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1895e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 1896e729f68cSMatthew G. Knepley 18979566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 18989566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 189963a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1900e729f68cSMatthew G. Knepley numComponents += Nc; 1901e729f68cSMatthew G. Knepley } 19029566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 190363a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 19049566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 19059566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1906e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1907e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 19086f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 19099c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1910e729f68cSMatthew G. Knepley 19119566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 1912e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(dm, NULL, PETSC_FALSE, localX, c, 0, NULL, &x)); 1913e729f68cSMatthew G. Knepley 1914e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1915e729f68cSMatthew G. Knepley PetscObject obj; 1916e729f68cSMatthew G. Knepley PetscClassId id; 1917e729f68cSMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 1918e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1919e729f68cSMatthew G. Knepley 19209566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 19219566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19229371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 19239371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 19249371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 19259371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 19269371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 19279371c9d4SSatish Balay Nb = 1; 19289371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 192923f34ed2SToby Isaac if (funcs[field]) { 19307318780aSToby Isaac for (q = 0; q < Nq; ++q) { 19312a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 19322a4e142eSMatthew G. Knepley 19332a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 19342a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 19352a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 19362a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 193763a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 19389566063dSJacob Faibussowitsch PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx)); 1939c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument) 1940e735a8a9SMatthew G. Knepley if (ierr) { 19419566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 19429566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 19439566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1944e735a8a9SMatthew G. Knepley } 1945c3e24edfSBarry Smith #endif 19469566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 19479566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 194863a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1949e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1950beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 19514bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1952e729f68cSMatthew G. Knepley } 1953e729f68cSMatthew G. Knepley } 195423f34ed2SToby Isaac } 1955beaa55a6SMatthew G. Knepley fieldOffset += Nb; 19569c3cf19fSMatthew G. Knepley qc += Nc; 1957e729f68cSMatthew G. Knepley } 19589566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 19599566063dSJacob Faibussowitsch PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES)); 1960e729f68cSMatthew G. Knepley } 19619566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 19629566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 19639566063dSJacob Faibussowitsch PetscCall(VecSqrtAbs(D)); 19643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1965e729f68cSMatthew G. Knepley } 1966e729f68cSMatthew G. Knepley 19675f0b18bfSMatthew G. Knepley /*@ 19682353bfffSMatthew G. Knepley DMPlexComputeL2FluxDiffVecLocal - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu` 19692353bfffSMatthew G. Knepley 19702353bfffSMatthew G. Knepley Collective 19712353bfffSMatthew G. Knepley 19722353bfffSMatthew G. Knepley Input Parameters: 19732353bfffSMatthew G. Knepley + lu - The local `Vec` containing the primal solution 19742353bfffSMatthew G. Knepley . f - The field number for the potential 19752353bfffSMatthew G. Knepley . lmu - The local `Vec` containing the mixed solution 19762353bfffSMatthew G. Knepley - mf - The field number for the flux 19772353bfffSMatthew G. Knepley 19782353bfffSMatthew G. Knepley Output Parameter: 19792353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$ 19802353bfffSMatthew G. Knepley 19812353bfffSMatthew G. Knepley Level: advanced 19822353bfffSMatthew G. Knepley 19832353bfffSMatthew G. Knepley Notes: 19842353bfffSMatthew G. Knepley We assume that the `DM` for each solution has the same topology, geometry, and quadrature. 19852353bfffSMatthew G. Knepley 19862353bfffSMatthew G. Knepley This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution. 19872353bfffSMatthew G. Knepley 19882353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVec()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 19892353bfffSMatthew G. Knepley @*/ 19902353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVecLocal(Vec lu, PetscInt f, Vec lmu, PetscInt mf, Vec eFlux) 19912353bfffSMatthew G. Knepley { 19922353bfffSMatthew G. Knepley DM dm, mdm, edm; 19932353bfffSMatthew G. Knepley PetscFE fe, mfe; 19942353bfffSMatthew G. Knepley PetscFEGeom fegeom; 19952353bfffSMatthew G. Knepley PetscQuadrature quad; 19962353bfffSMatthew G. Knepley const PetscReal *quadWeights; 19972353bfffSMatthew G. Knepley PetscReal *coords; 19982353bfffSMatthew G. Knepley PetscScalar *interpolant, *minterpolant, *earray; 19992353bfffSMatthew G. Knepley PetscInt cdim, mcdim, cStart, cEnd, Nc, mNc, qNc, Nq; 20002353bfffSMatthew G. Knepley MPI_Comm comm; 20012353bfffSMatthew G. Knepley 20022353bfffSMatthew G. Knepley PetscFunctionBegin; 20032353bfffSMatthew G. Knepley PetscCall(VecGetDM(lu, &dm)); 20042353bfffSMatthew G. Knepley PetscCall(VecGetDM(lmu, &mdm)); 20052353bfffSMatthew G. Knepley PetscCall(VecGetDM(eFlux, &edm)); 20062353bfffSMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 20072353bfffSMatthew G. Knepley PetscCall(VecSet(eFlux, 0.0)); 20082353bfffSMatthew G. Knepley 20092353bfffSMatthew G. Knepley // Check if the both problems are on the same mesh 20102353bfffSMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 20112353bfffSMatthew G. Knepley PetscCall(DMGetCoordinateDim(mdm, &mcdim)); 20122353bfffSMatthew G. Knepley PetscCheck(cdim == mcdim, comm, PETSC_ERR_ARG_SIZ, "primal coordinate Dim %" PetscInt_FMT " != %" PetscInt_FMT " mixed coordinate Dim", cdim, mcdim); 20132353bfffSMatthew G. Knepley fegeom.dimEmbed = cdim; 20142353bfffSMatthew G. Knepley 20152353bfffSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 20162353bfffSMatthew G. Knepley PetscCall(DMGetField(mdm, mf, NULL, (PetscObject *)&mfe)); 20172353bfffSMatthew G. Knepley PetscCall(PetscFEGetNumComponents(fe, &Nc)); 20182353bfffSMatthew G. Knepley PetscCall(PetscFEGetNumComponents(mfe, &mNc)); 20192353bfffSMatthew G. Knepley PetscCall(PetscFEGetQuadrature(fe, &quad)); 20202353bfffSMatthew G. Knepley PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 20212353bfffSMatthew G. Knepley PetscCheck(qNc == 1 || qNc == mNc, comm, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, mNc); 20222353bfffSMatthew G. Knepley 20232353bfffSMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 20242353bfffSMatthew G. Knepley PetscCall(VecGetArrayWrite(eFlux, &earray)); 20252353bfffSMatthew G. Knepley PetscCall(PetscMalloc6(Nc * cdim, &interpolant, mNc * cdim, &minterpolant, cdim * (Nq + 1), &coords, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ, Nq, &fegeom.detJ)); 20262353bfffSMatthew G. Knepley for (PetscInt c = cStart; c < cEnd; ++c) { 20272353bfffSMatthew G. Knepley PetscScalar *x = NULL; 20282353bfffSMatthew G. Knepley PetscScalar *mx = NULL; 20292353bfffSMatthew G. Knepley PetscScalar *eval = NULL; 20302353bfffSMatthew G. Knepley PetscReal fluxElemDiff = 0.0; 20312353bfffSMatthew G. Knepley 20322353bfffSMatthew G. Knepley PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 20332353bfffSMatthew G. Knepley PetscCall(DMPlexVecGetClosure(dm, NULL, lu, c, NULL, &x)); 20342353bfffSMatthew G. Knepley PetscCall(DMPlexVecGetClosure(mdm, NULL, lmu, c, NULL, &mx)); 20352353bfffSMatthew G. Knepley 20362353bfffSMatthew G. Knepley for (PetscInt q = 0; q < Nq; ++q) { 20372353bfffSMatthew G. Knepley PetscFEGeom qgeom; 20382353bfffSMatthew G. Knepley 20392353bfffSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 20402353bfffSMatthew G. Knepley qgeom.J = &fegeom.J[q * cdim * cdim]; 20412353bfffSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * cdim * cdim]; 20422353bfffSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 20432353bfffSMatthew G. Knepley 20442353bfffSMatthew G. Knepley PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 20452353bfffSMatthew G. Knepley 20462353bfffSMatthew G. Knepley PetscCall(PetscFEInterpolate_Static(mfe, &mx[0], &qgeom, q, minterpolant)); 20472353bfffSMatthew G. Knepley PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[0], &qgeom, q, interpolant)); 20482353bfffSMatthew G. Knepley 20492353bfffSMatthew G. Knepley /* Now take the elementwise difference and store that in a vector. */ 20502353bfffSMatthew G. Knepley for (PetscInt fc = 0; fc < mNc; ++fc) { 20512353bfffSMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : fc)]; 20522353bfffSMatthew G. Knepley fluxElemDiff += PetscSqr(PetscRealPart(interpolant[fc] - minterpolant[fc])) * wt * fegeom.detJ[q]; 20532353bfffSMatthew G. Knepley } 20542353bfffSMatthew G. Knepley } 20552353bfffSMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(dm, NULL, lu, c, NULL, &x)); 20562353bfffSMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(mdm, NULL, lmu, c, NULL, &mx)); 20572353bfffSMatthew G. Knepley PetscCall(DMPlexPointGlobalRef(edm, c, earray, (void *)&eval)); 20582353bfffSMatthew G. Knepley if (eval) eval[0] = fluxElemDiff; 20592353bfffSMatthew G. Knepley } 20602353bfffSMatthew G. Knepley PetscCall(PetscFree6(interpolant, minterpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 20612353bfffSMatthew G. Knepley PetscCall(VecRestoreArrayWrite(eFlux, &earray)); 20622353bfffSMatthew G. Knepley 20632353bfffSMatthew G. Knepley PetscCall(VecAssemblyBegin(eFlux)); 20642353bfffSMatthew G. Knepley PetscCall(VecAssemblyEnd(eFlux)); 20652353bfffSMatthew G. Knepley PetscCall(VecSqrtAbs(eFlux)); 20662353bfffSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 20672353bfffSMatthew G. Knepley } 20682353bfffSMatthew G. Knepley 20692353bfffSMatthew G. Knepley /*@ 20702353bfffSMatthew G. Knepley DMPlexComputeL2FluxDiffVec - This function computes the integral of the difference between the gradient of field `f`in `u` and field `mf` in `mu` 20712353bfffSMatthew G. Knepley 20722353bfffSMatthew G. Knepley Collective 20732353bfffSMatthew G. Knepley 20742353bfffSMatthew G. Knepley Input Parameters: 20752353bfffSMatthew G. Knepley + u - The global `Vec` containing the primal solution 20762353bfffSMatthew G. Knepley . f - The field number for the potential 20772353bfffSMatthew G. Knepley . mu - The global `Vec` containing the mixed solution 20782353bfffSMatthew G. Knepley - mf - The field number for the flux 20792353bfffSMatthew G. Knepley 20802353bfffSMatthew G. Knepley Output Parameter: 20812353bfffSMatthew G. Knepley . eFlux - A global `Vec` which holds $||\nabla u_f - \mu_{mf}||$ 20822353bfffSMatthew G. Knepley 20832353bfffSMatthew G. Knepley Level: advanced 20842353bfffSMatthew G. Knepley 20852353bfffSMatthew G. Knepley Notes: 20862353bfffSMatthew G. Knepley We assume that the `DM` for each solution has the same topology, geometry, and quadrature. 20872353bfffSMatthew G. Knepley 20882353bfffSMatthew G. Knepley This is usually used to get an error estimate for the primal solution, using the flux from a mixed solution. 20892353bfffSMatthew G. Knepley 20902353bfffSMatthew G. Knepley .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeL2FluxDiffVecLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 20912353bfffSMatthew G. Knepley @*/ 20922353bfffSMatthew G. Knepley PetscErrorCode DMPlexComputeL2FluxDiffVec(Vec u, PetscInt f, Vec mu, PetscInt mf, Vec eFlux) 20932353bfffSMatthew G. Knepley { 20942353bfffSMatthew G. Knepley DM dm, mdm; 20952353bfffSMatthew G. Knepley Vec lu, lmu; 20962353bfffSMatthew G. Knepley 20972353bfffSMatthew G. Knepley PetscFunctionBegin; 20982353bfffSMatthew G. Knepley PetscCall(VecGetDM(u, &dm)); 20992353bfffSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &lu)); 21002353bfffSMatthew G. Knepley PetscCall(DMGlobalToLocal(dm, u, INSERT_VALUES, lu)); 21012353bfffSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, lu, 0.0, NULL, NULL, NULL)); 21022353bfffSMatthew G. Knepley 21032353bfffSMatthew G. Knepley PetscCall(VecGetDM(mu, &mdm)); 21042353bfffSMatthew G. Knepley PetscCall(DMGetLocalVector(mdm, &lmu)); 21052353bfffSMatthew G. Knepley PetscCall(DMGlobalToLocal(mdm, mu, INSERT_VALUES, lmu)); 21062353bfffSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValues(mdm, PETSC_TRUE, lmu, 0.0, NULL, NULL, NULL)); 21072353bfffSMatthew G. Knepley 21082353bfffSMatthew G. Knepley PetscCall(DMPlexComputeL2FluxDiffVecLocal(lu, f, lmu, mf, eFlux)); 21092353bfffSMatthew G. Knepley 21102353bfffSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &lu)); 21112353bfffSMatthew G. Knepley PetscCall(DMRestoreLocalVector(mdm, &lmu)); 21122353bfffSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 21132353bfffSMatthew G. Knepley } 21142353bfffSMatthew G. Knepley 21152353bfffSMatthew G. Knepley /*@ 211620f4b53cSBarry Smith DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1 21175f0b18bfSMatthew G. Knepley 211820f4b53cSBarry Smith Collective 21195f0b18bfSMatthew G. Knepley 21205f0b18bfSMatthew G. Knepley Input Parameters: 2121a1cb98faSBarry Smith + dm - The `DM` 21225f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 21235f0b18bfSMatthew G. Knepley 21245f0b18bfSMatthew G. Knepley Output Parameter: 2125a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function 21265f0b18bfSMatthew G. Knepley 21275f0b18bfSMatthew G. Knepley Level: developer 21285f0b18bfSMatthew G. Knepley 2129a1cb98faSBarry Smith Note: 2130a1cb98faSBarry Smith $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 2131a1cb98faSBarry Smith 21321cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 21335f0b18bfSMatthew G. Knepley @*/ 2134d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC) 2135d71ae5a4SJacob Faibussowitsch { 21365f0b18bfSMatthew G. Knepley PetscInt debug = ((DM_Plex *)dm->data)->printFEM; 21375f0b18bfSMatthew G. Knepley DM dmc; 21385f0b18bfSMatthew G. Knepley PetscQuadrature quad; 21395f0b18bfSMatthew G. Knepley PetscScalar *interpolant, *valsum; 21405f0b18bfSMatthew G. Knepley PetscFEGeom fegeom; 21415f0b18bfSMatthew G. Knepley PetscReal *coords; 21425f0b18bfSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 21435f0b18bfSMatthew G. Knepley PetscInt dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v; 21445f0b18bfSMatthew G. Knepley 21455f0b18bfSMatthew G. Knepley PetscFunctionBegin; 21469566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 21479566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmc)); 21489566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 21499566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 21509566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 21515f0b18bfSMatthew G. Knepley fegeom.dimEmbed = cdim; 21529566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 21535f0b18bfSMatthew G. Knepley PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 21545f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 21555f0b18bfSMatthew G. Knepley PetscObject obj; 21565f0b18bfSMatthew G. Knepley PetscClassId id; 21575f0b18bfSMatthew G. Knepley PetscInt fNc; 21585f0b18bfSMatthew G. Knepley 21599566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 21609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 21615f0b18bfSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 21625f0b18bfSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 21635f0b18bfSMatthew G. Knepley 21649566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 21659566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &fNc)); 21665f0b18bfSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 21675f0b18bfSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 21685f0b18bfSMatthew G. Knepley 21699566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 21709566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &fNc)); 217163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 21725f0b18bfSMatthew G. Knepley Nc += fNc; 21735f0b18bfSMatthew G. Knepley } 21749566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 217563a3b9bcSJacob Faibussowitsch PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc); 21769566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ)); 21779566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 21789566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 21795f0b18bfSMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 21805f0b18bfSMatthew G. Knepley PetscScalar volsum = 0.0; 21815f0b18bfSMatthew G. Knepley PetscInt *star = NULL; 21825f0b18bfSMatthew G. Knepley PetscInt starSize, st, fc; 21835f0b18bfSMatthew G. Knepley 21849566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(valsum, Nc)); 21859566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 21865f0b18bfSMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 21875f0b18bfSMatthew G. Knepley const PetscInt cell = star[st]; 21885f0b18bfSMatthew G. Knepley PetscScalar *val = &valsum[Nc]; 21895f0b18bfSMatthew G. Knepley PetscScalar *x = NULL; 21905f0b18bfSMatthew G. Knepley PetscReal vol = 0.0; 21915f0b18bfSMatthew G. Knepley PetscInt foff = 0; 21925f0b18bfSMatthew G. Knepley 21935f0b18bfSMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 21949566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 21959566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 21965f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 21975f0b18bfSMatthew G. Knepley PetscObject obj; 21985f0b18bfSMatthew G. Knepley PetscClassId id; 21995f0b18bfSMatthew G. Knepley PetscInt Nb, fNc, q; 22005f0b18bfSMatthew G. Knepley 22019566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(val, Nc)); 22029566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 22039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 22049371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 22059371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc)); 22069371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 22079371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 22089371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc)); 22099371c9d4SSatish Balay Nb = 1; 22109371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 22115f0b18bfSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 22125f0b18bfSMatthew G. Knepley const PetscReal wt = quadWeights[q] * fegeom.detJ[q]; 22135f0b18bfSMatthew G. Knepley PetscFEGeom qgeom; 22145f0b18bfSMatthew G. Knepley 22155f0b18bfSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 22165f0b18bfSMatthew G. Knepley qgeom.J = &fegeom.J[q * cdim * cdim]; 22175f0b18bfSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * cdim * cdim]; 22185f0b18bfSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 221963a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 22209566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant)); 222163a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 22225f0b18bfSMatthew G. Knepley for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt; 22235f0b18bfSMatthew G. Knepley vol += wt; 22245f0b18bfSMatthew G. Knepley } 22255f0b18bfSMatthew G. Knepley foff += Nb; 22265f0b18bfSMatthew G. Knepley } 22279566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 22285f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc]; 22295f0b18bfSMatthew G. Knepley volsum += vol; 22305f0b18bfSMatthew G. Knepley if (debug) { 22319566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell)); 22325f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 22339566063dSJacob Faibussowitsch if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 22349566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc]))); 22355f0b18bfSMatthew G. Knepley } 22369566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 22375f0b18bfSMatthew G. Knepley } 22385f0b18bfSMatthew G. Knepley } 22395f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum; 22409566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 22419566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES)); 22425f0b18bfSMatthew G. Knepley } 22439566063dSJacob Faibussowitsch PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 22443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22455f0b18bfSMatthew G. Knepley } 22465f0b18bfSMatthew G. Knepley 22475f0b18bfSMatthew G. Knepley /*@ 224820f4b53cSBarry Smith DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1 22491555c271SMatthew G. Knepley 225020f4b53cSBarry Smith Collective 2251c0f8e1fdSMatthew G. Knepley 22521555c271SMatthew G. Knepley Input Parameters: 2253a1cb98faSBarry Smith + dm - The `DM` 22545f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 22551555c271SMatthew G. Knepley 22561555c271SMatthew G. Knepley Output Parameter: 2257a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient 22581555c271SMatthew G. Knepley 22591555c271SMatthew G. Knepley Level: developer 22601555c271SMatthew G. Knepley 2261a1cb98faSBarry Smith Note: 2262a1cb98faSBarry Smith $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 2263a1cb98faSBarry Smith 22641cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 22651555c271SMatthew G. Knepley @*/ 2266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 2267d71ae5a4SJacob Faibussowitsch { 2268db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2269db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 22701555c271SMatthew G. Knepley DM dmC; 22711555c271SMatthew G. Knepley PetscQuadrature quad; 22721555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 22734bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 22744bee2e38SMatthew G. Knepley PetscReal *coords; 22751555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 2276485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 22771555c271SMatthew G. Knepley 22781555c271SMatthew G. Knepley PetscFunctionBegin; 22799566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 22809566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmC)); 22819566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 22829566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 22839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 22844bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 22859566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 22865f80ce2aSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 22871555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 22881555c271SMatthew G. Knepley PetscObject obj; 22891555c271SMatthew G. Knepley PetscClassId id; 22901555c271SMatthew G. Knepley PetscInt Nc; 22911555c271SMatthew G. Knepley 22929566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 22939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 22941555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 22951555c271SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 22961555c271SMatthew G. Knepley 22979566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 22989566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 22991555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 23001555c271SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 23011555c271SMatthew G. Knepley 23029566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 23039566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 230463a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 23051555c271SMatthew G. Knepley numComponents += Nc; 23061555c271SMatthew G. Knepley } 23079566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 230863a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 23099566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 23109566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 23119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 23121555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 23131555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 23141555c271SMatthew G. Knepley PetscInt *star = NULL; 23151555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 23161555c271SMatthew G. Knepley 23179566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(gradsum, coordDim * numComponents)); 23189566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 23191555c271SMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 23201555c271SMatthew G. Knepley const PetscInt cell = star[st]; 23211555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim * numComponents]; 23221555c271SMatthew G. Knepley PetscScalar *x = NULL; 23231555c271SMatthew G. Knepley PetscReal vol = 0.0; 23241555c271SMatthew G. Knepley 23251555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 23269566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 23279566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 23281555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 23291555c271SMatthew G. Knepley PetscObject obj; 23301555c271SMatthew G. Knepley PetscClassId id; 23311555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 23321555c271SMatthew G. Knepley 23339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(grad, coordDim * numComponents)); 23349566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 23359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 23369371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 23379371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 23389371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 23399371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 23409371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 23419371c9d4SSatish Balay Nb = 1; 23429371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 23431555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 23442a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 23452a4e142eSMatthew G. Knepley 23462a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 23472a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 23482a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 23492a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 235063a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 23519566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant)); 235263a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 23531555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 235453d2db2dSJoe Wallwork const PetscReal wt = quadWeights[q * qNc + qc]; 23551555c271SMatthew G. Knepley 23564bee2e38SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q]; 23571555c271SMatthew G. Knepley } 23584bee2e38SMatthew G. Knepley vol += quadWeights[q * qNc] * fegeom.detJ[q]; 23591555c271SMatthew G. Knepley } 23601555c271SMatthew G. Knepley fieldOffset += Nb; 23611555c271SMatthew G. Knepley qc += Nc; 23621555c271SMatthew G. Knepley } 23639566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 2364f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 2365ad540459SPierre Jolivet for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d]; 2366f8527842SMatthew G. Knepley } 2367f8527842SMatthew G. Knepley volsum += vol; 2368db1066baSMatthew G. Knepley if (debug) { 23699566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell)); 23701555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 23711555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 23729566063dSJacob Faibussowitsch if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 23739566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d]))); 23741555c271SMatthew G. Knepley } 23751555c271SMatthew G. Knepley } 23769566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 2377db1066baSMatthew G. Knepley } 23781555c271SMatthew G. Knepley } 23791555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 23801555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum; 23811555c271SMatthew G. Knepley } 23829566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 23839566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 23841555c271SMatthew G. Knepley } 23859566063dSJacob Faibussowitsch PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 23863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23871555c271SMatthew G. Knepley } 23881555c271SMatthew G. Knepley 23896493148fSStefano Zampini PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec locX, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 2390d71ae5a4SJacob Faibussowitsch { 2391cbf8eb3cSStefano Zampini DM dmAux = NULL, plexA = NULL; 239261aaff12SToby Isaac PetscDS prob, probAux = NULL; 239373d901b8SMatthew G. Knepley PetscSection section, sectionAux; 23946493148fSStefano Zampini Vec locA; 2395c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 2396c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 2397338f77d5SMatthew G. Knepley /* DS */ 2398338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 2399338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 24008e3a54c0SPierre Jolivet PetscScalar *u, *a = NULL; 2401338f77d5SMatthew G. Knepley const PetscScalar *constants; 2402338f77d5SMatthew G. Knepley /* Geometry */ 2403c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 2404338f77d5SMatthew G. Knepley DM dmGrad; 2405c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 2406338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 2407b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 2408338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 2409b7260050SToby Isaac PetscInt maxDegree; 2410c330f8ffSToby Isaac DMField coordField; 2411c330f8ffSToby Isaac IS cellIS; 241273d901b8SMatthew G. Knepley 241373d901b8SMatthew G. Knepley PetscFunctionBegin; 24149566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 24159566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24169566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 24179566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 2418338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 2419b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2420b5a3613cSMatthew G. Knepley PetscObject obj; 2421b5a3613cSMatthew G. Knepley PetscClassId id; 2422b5a3613cSMatthew G. Knepley 24239566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 24249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2425338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 2426338f77d5SMatthew G. Knepley } 2427338f77d5SMatthew G. Knepley /* Read DS information */ 24289566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 24299566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 24309566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 24319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS)); 24329566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 2433338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 24349566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 24359a2a23afSMatthew G. Knepley if (locA) { 24369566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 2437cbf8eb3cSStefano Zampini PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 24389566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 24399566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 24409566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 24419566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 24429566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 2443338f77d5SMatthew G. Knepley } 2444338f77d5SMatthew G. Knepley /* Allocate data arrays */ 24459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numCells * totDim, &u)); 24469566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 2447338f77d5SMatthew G. Knepley /* Read out geometry */ 24489566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 24499566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 2450b7260050SToby Isaac if (maxDegree <= 1) { 24519566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 2452ac9d17c7SMatthew G. Knepley if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FEGEOM_BASIC, &cgeomFEM)); 2453b5a3613cSMatthew G. Knepley } 2454b5a3613cSMatthew G. Knepley if (useFVM) { 2455338f77d5SMatthew G. Knepley PetscFV fv = NULL; 2456b5a3613cSMatthew G. Knepley Vec grad; 2457b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 2458b5a3613cSMatthew G. Knepley PetscBool compGrad; 2459b5a3613cSMatthew G. Knepley 2460338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2461338f77d5SMatthew G. Knepley PetscObject obj; 2462338f77d5SMatthew G. Knepley PetscClassId id; 2463338f77d5SMatthew G. Knepley 24649566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 24659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 24669371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 24679371c9d4SSatish Balay fv = (PetscFV)obj; 24689371c9d4SSatish Balay break; 24699371c9d4SSatish Balay } 2470338f77d5SMatthew G. Knepley } 24719566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &compGrad)); 24729566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE)); 24739566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM)); 24749566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad)); 24759566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, compGrad)); 24769566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 2477b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 24789566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 24799566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 24809566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 2481b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 24829566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 24839566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 24849566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 24859566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 2486b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 24879566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad)); 24889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 2489b5a3613cSMatthew G. Knepley } 2490338f77d5SMatthew G. Knepley /* Read out data from inputs */ 249173d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 249273d901b8SMatthew G. Knepley PetscScalar *x = NULL; 249373d901b8SMatthew G. Knepley PetscInt i; 249473d901b8SMatthew G. Knepley 24959566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x)); 24960f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 24979566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x)); 249873d901b8SMatthew G. Knepley if (dmAux) { 2499cbf8eb3cSStefano Zampini PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, c, NULL, &x)); 25000f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 2501cbf8eb3cSStefano Zampini PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, c, NULL, &x)); 250273d901b8SMatthew G. Knepley } 250373d901b8SMatthew G. Knepley } 2504338f77d5SMatthew G. Knepley /* Do integration for each field */ 250573d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2506c1f031eeSMatthew G. Knepley PetscObject obj; 2507c1f031eeSMatthew G. Knepley PetscClassId id; 2508c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 250973d901b8SMatthew G. Knepley 25109566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 25119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2512c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2513c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2514c1f031eeSMatthew G. Knepley PetscQuadrature q; 2515c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 2516c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 2517c1f031eeSMatthew G. Knepley 25189566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 25199566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 25209566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 25219566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 2522c1f031eeSMatthew G. Knepley blockSize = Nb * Nq; 252373d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 25249566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 252573d901b8SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 252673d901b8SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 252773d901b8SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 252873d901b8SMatthew G. Knepley offset = numCells - Nr; 2529ac9d17c7SMatthew G. Knepley if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FEGEOM_BASIC, &cgeomFEM)); 25309566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 25319566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral)); 25329566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom)); 25338e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &cintegral[offset * Nf])); 25349566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom)); 253548a46eb9SPierre Jolivet if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 2536c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 2537c1f031eeSMatthew G. Knepley PetscInt foff; 25382192575eSBarry Smith PetscPointFn *obj_func; 2539c1f031eeSMatthew G. Knepley 25409566063dSJacob Faibussowitsch PetscCall(PetscDSGetObjective(prob, f, &obj_func)); 25419566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, f, &foff)); 2542c1f031eeSMatthew G. Knepley if (obj_func) { 2543c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 2544b5a3613cSMatthew G. Knepley PetscScalar *u_x; 2545d627b919SMatthew G. Knepley PetscScalar lint = 0.; 2546b5a3613cSMatthew G. Knepley 25479566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x)); 254855bffe1bSPierre Jolivet obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, PetscSafePointerPlusOffset(a, totDimAux * c), NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 2549338f77d5SMatthew G. Knepley cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume; 255073d901b8SMatthew G. Knepley } 2551c1f031eeSMatthew G. Knepley } 255263a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 2553c1f031eeSMatthew G. Knepley } 2554338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 2555b5a3613cSMatthew G. Knepley if (useFVM) { 25569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 25589566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 25599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&faceGeometryFVM)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cellGeometryFVM)); 25619566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmGrad)); 2562b5a3613cSMatthew G. Knepley } 25639566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscFree(a)); 2564cbf8eb3cSStefano Zampini PetscCall(DMDestroy(&plexA)); 25659566063dSJacob Faibussowitsch PetscCall(PetscFree(u)); 2566338f77d5SMatthew G. Knepley /* Cleanup */ 256748a46eb9SPierre Jolivet if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 25689566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 25699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 25703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2571338f77d5SMatthew G. Knepley } 2572338f77d5SMatthew G. Knepley 2573338f77d5SMatthew G. Knepley /*@ 2574338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 2575338f77d5SMatthew G. Knepley 2576338f77d5SMatthew G. Knepley Input Parameters: 2577338f77d5SMatthew G. Knepley + dm - The mesh 2578338f77d5SMatthew G. Knepley . X - Global input vector 2579338f77d5SMatthew G. Knepley - user - The user context 2580338f77d5SMatthew G. Knepley 2581338f77d5SMatthew G. Knepley Output Parameter: 2582338f77d5SMatthew G. Knepley . integral - Integral for each field 2583338f77d5SMatthew G. Knepley 2584338f77d5SMatthew G. Knepley Level: developer 2585338f77d5SMatthew G. Knepley 25861cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2587338f77d5SMatthew G. Knepley @*/ 2588d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 2589d71ae5a4SJacob Faibussowitsch { 2590cbf8eb3cSStefano Zampini PetscInt printFEM; 2591b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 2592412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 25936493148fSStefano Zampini Vec locX; 2594338f77d5SMatthew G. Knepley 2595338f77d5SMatthew G. Knepley PetscFunctionBegin; 2596338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2597338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 25984f572ea9SToby Isaac PetscAssertPointer(integral, 3); 25999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2600cbf8eb3cSStefano Zampini PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE)); 26019566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 26029566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 26039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2604338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 26059566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral)); 26066493148fSStefano Zampini /* Get local solution with boundary values */ 26076493148fSStefano Zampini PetscCall(DMGetLocalVector(dm, &locX)); 26086493148fSStefano Zampini PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 26096493148fSStefano Zampini PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 26106493148fSStefano Zampini PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 26116493148fSStefano Zampini PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user)); 26126493148fSStefano Zampini PetscCall(DMRestoreLocalVector(dm, &locX)); 2613cbf8eb3cSStefano Zampini printFEM = ((DM_Plex *)dm->data)->printFEM; 2614338f77d5SMatthew G. Knepley /* Sum up values */ 2615338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2616338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2617338f77d5SMatthew G. Knepley 2618cbf8eb3cSStefano Zampini if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 2619b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f]; 2620338f77d5SMatthew G. Knepley } 2621e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 2622cbf8eb3cSStefano Zampini if (printFEM) { 26239566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:")); 26249566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f]))); 26259566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n")); 262673d901b8SMatthew G. Knepley } 26279566063dSJacob Faibussowitsch PetscCall(PetscFree2(lintegral, cintegral)); 26289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2629cbf8eb3cSStefano Zampini PetscCall(DMDestroy(&dm)); 26303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2631338f77d5SMatthew G. Knepley } 2632338f77d5SMatthew G. Knepley 2633338f77d5SMatthew G. Knepley /*@ 2634338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 2635338f77d5SMatthew G. Knepley 2636338f77d5SMatthew G. Knepley Input Parameters: 2637338f77d5SMatthew G. Knepley + dm - The mesh 2638338f77d5SMatthew G. Knepley . X - Global input vector 2639338f77d5SMatthew G. Knepley - user - The user context 2640338f77d5SMatthew G. Knepley 2641338f77d5SMatthew G. Knepley Output Parameter: 264260225df5SJacob Faibussowitsch . F - Cellwise integrals for each field 2643338f77d5SMatthew G. Knepley 2644338f77d5SMatthew G. Knepley Level: developer 2645338f77d5SMatthew G. Knepley 26461cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2647338f77d5SMatthew G. Knepley @*/ 2648d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 2649d71ae5a4SJacob Faibussowitsch { 2650cbf8eb3cSStefano Zampini PetscInt printFEM; 2651338f77d5SMatthew G. Knepley DM dmF; 26529c8ab049SStefano Zampini PetscSection sectionF = NULL; 2653338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 26549c8ab049SStefano Zampini PetscInt Nf, f, cellHeight, cStart, cEnd, cell, n; 26556493148fSStefano Zampini Vec locX; 2656338f77d5SMatthew G. Knepley 2657338f77d5SMatthew G. Knepley PetscFunctionBegin; 2658338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2659338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2660338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 26619566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2662cbf8eb3cSStefano Zampini PetscCall(DMPlexConvertPlex(dm, &dm, PETSC_TRUE)); 26639566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 26649566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 26659566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2666338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 26679566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral)); 26686493148fSStefano Zampini /* Get local solution with boundary values */ 26696493148fSStefano Zampini PetscCall(DMGetLocalVector(dm, &locX)); 26706493148fSStefano Zampini PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 26716493148fSStefano Zampini PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 26726493148fSStefano Zampini PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 26736493148fSStefano Zampini PetscCall(DMPlexComputeIntegral_Internal(dm, locX, cStart, cEnd, cintegral, user)); 26746493148fSStefano Zampini PetscCall(DMRestoreLocalVector(dm, &locX)); 2675338f77d5SMatthew G. Knepley /* Put values in F */ 26769566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &af)); 26779c8ab049SStefano Zampini PetscCall(VecGetDM(F, &dmF)); 26789c8ab049SStefano Zampini if (dmF) PetscCall(DMGetLocalSection(dmF, §ionF)); 26799c8ab049SStefano Zampini PetscCall(VecGetLocalSize(F, &n)); 26809c8ab049SStefano Zampini PetscCheck(n >= (cEnd - cStart) * Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Vector size %" PetscInt_FMT " < %" PetscInt_FMT, n, (cEnd - cStart) * Nf); 2681cbf8eb3cSStefano Zampini printFEM = ((DM_Plex *)dm->data)->printFEM; 2682338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2683338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 26849c8ab049SStefano Zampini PetscInt dof = Nf, off = c * Nf; 2685338f77d5SMatthew G. Knepley 2686cbf8eb3cSStefano Zampini if (printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 26879c8ab049SStefano Zampini if (sectionF) { 26889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionF, cell, &dof)); 26899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionF, cell, &off)); 26909c8ab049SStefano Zampini } 269163a3b9bcSJacob Faibussowitsch PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf); 2692338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f]; 2693338f77d5SMatthew G. Knepley } 26949566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &af)); 26959566063dSJacob Faibussowitsch PetscCall(PetscFree(cintegral)); 26969566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2697cbf8eb3cSStefano Zampini PetscCall(DMDestroy(&dm)); 26983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 269973d901b8SMatthew G. Knepley } 270073d901b8SMatthew G. Knepley 270179ab67a3SMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user) 2702d71ae5a4SJacob Faibussowitsch { 27039b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 2704a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 27059b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 27069b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 27079b6f715bSMatthew G. Knepley Vec locA = NULL; 27089b6f715bSMatthew G. Knepley DMField coordField; 27099b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 27109b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 27119b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 271264c72086SMatthew G. Knepley const PetscScalar *constants; 27139b6f715bSMatthew G. Knepley PetscInt numConstants, f; 271464c72086SMatthew G. Knepley 271564c72086SMatthew G. Knepley PetscFunctionBegin; 27169566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 27179566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 27189566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 27199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 272164c72086SMatthew G. Knepley /* Determine which discretizations we have */ 27229b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 272364c72086SMatthew G. Knepley PetscObject obj; 272464c72086SMatthew G. Knepley PetscClassId id; 272564c72086SMatthew G. Knepley 27269566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 27279566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 272863a3b9bcSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f); 272964c72086SMatthew G. Knepley } 273064c72086SMatthew G. Knepley /* Read DS information */ 27319566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 27329566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 27339566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 27349566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 273564c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 27369566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 27379b6f715bSMatthew G. Knepley if (locA) { 27389b6f715bSMatthew G. Knepley DM dmAux; 27399b6f715bSMatthew G. Knepley 27409566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 27419566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 27429566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 27439566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 27449566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 27459566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 27469566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 27479566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 274864c72086SMatthew G. Knepley } 27499b6f715bSMatthew G. Knepley /* Integrate over points */ 27509b6f715bSMatthew G. Knepley { 27519b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 2752b7260050SToby Isaac PetscInt maxDegree; 27539b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 27549b6f715bSMatthew G. Knepley const PetscInt *points; 27559b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 27569b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 275764c72086SMatthew G. Knepley 27589566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 27599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 276032603206SJames Wright PetscCall(PetscCalloc2(numFaces * totDim, &u, (locA ? (size_t)numFaces * totDimAux : 0), &a)); 27619566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 276279ab67a3SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 276379ab67a3SMatthew G. Knepley const PetscInt point = points[face], *support; 276479ab67a3SMatthew G. Knepley PetscScalar *x = NULL; 276579ab67a3SMatthew G. Knepley 276679ab67a3SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support)); 276779ab67a3SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 276879ab67a3SMatthew G. Knepley for (PetscInt i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 276979ab67a3SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 277079ab67a3SMatthew G. Knepley if (locA) { 277179ab67a3SMatthew G. Knepley PetscInt subp; 277279ab67a3SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 277379ab67a3SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 277479ab67a3SMatthew G. Knepley for (PetscInt i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i]; 277579ab67a3SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 277679ab67a3SMatthew G. Knepley } 277779ab67a3SMatthew G. Knepley } 277864c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 277964c72086SMatthew G. Knepley PetscFE fe; 278064c72086SMatthew G. Knepley 27819566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 27829566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 27839b6f715bSMatthew G. Knepley if (!qGeom) { 27849566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 27859566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 27869b6f715bSMatthew G. Knepley } 27879566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 2788ac9d17c7SMatthew G. Knepley PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_FEGEOM_BOUNDARY, &fgeom)); 27899b6f715bSMatthew G. Knepley /* Get blocking */ 27909b6f715bSMatthew G. Knepley { 27919b6f715bSMatthew G. Knepley PetscQuadrature q; 27929b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 27939b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 27949b6f715bSMatthew G. Knepley 27959566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 27969566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 27979566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 27989566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 279964c72086SMatthew G. Knepley blockSize = Nb * Nq; 280064c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 28019b6f715bSMatthew G. Knepley chunkSize = numBatches * batchSize; 28029566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 28039b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 28049b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 280564c72086SMatthew G. Knepley offset = numFaces - Nr; 280664c72086SMatthew G. Knepley } 28079b6f715bSMatthew G. Knepley /* Do integration for each field */ 28089b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 28099566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom)); 281079ab67a3SMatthew G. Knepley PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], chunkSize, chunkGeom, &u[chunk * chunkSize * totDim], probAux, PetscSafePointerPlusOffset(a, chunk * chunkSize * totDimAux), &fintegral[chunk * chunkSize * Nf])); 28119566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 281264c72086SMatthew G. Knepley } 28139566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 281479ab67a3SMatthew G. Knepley PetscCall(PetscFEIntegrateBd(prob, field, funcs[field], Nr, chunkGeom, &u[offset * totDim], probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), &fintegral[offset * Nf])); 28159566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 281664c72086SMatthew G. Knepley /* Cleanup data arrays */ 2817ac9d17c7SMatthew G. Knepley PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_FEGEOM_BOUNDARY, &fgeom)); 28189566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 281979ab67a3SMatthew G. Knepley } 28209566063dSJacob Faibussowitsch PetscCall(PetscFree2(u, a)); 28219566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 282264c72086SMatthew G. Knepley } 28239566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 28249566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 28253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28269b6f715bSMatthew G. Knepley } 28279b6f715bSMatthew G. Knepley 282860225df5SJacob Faibussowitsch /*@C 28299b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 28309b6f715bSMatthew G. Knepley 28319b6f715bSMatthew G. Knepley Input Parameters: 28329b6f715bSMatthew G. Knepley + dm - The mesh 28339b6f715bSMatthew G. Knepley . X - Global input vector 2834a1cb98faSBarry Smith . label - The boundary `DMLabel` 2835a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values 2836a1cb98faSBarry Smith . vals - The label values to use, or NULL for all values 283779ab67a3SMatthew G. Knepley . funcs - The functions to integrate along the boundary for each field 28389b6f715bSMatthew G. Knepley - user - The user context 28399b6f715bSMatthew G. Knepley 28409b6f715bSMatthew G. Knepley Output Parameter: 28419b6f715bSMatthew G. Knepley . integral - Integral for each field 28429b6f715bSMatthew G. Knepley 28439b6f715bSMatthew G. Knepley Level: developer 28449b6f715bSMatthew G. Knepley 28451cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()` 28469b6f715bSMatthew G. Knepley @*/ 284779ab67a3SMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user) 2848d71ae5a4SJacob Faibussowitsch { 28499b6f715bSMatthew G. Knepley Vec locX; 28509b6f715bSMatthew G. Knepley PetscSection section; 28519b6f715bSMatthew G. Knepley DMLabel depthLabel; 28529b6f715bSMatthew G. Knepley IS facetIS; 28539b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 28549b6f715bSMatthew G. Knepley 28559b6f715bSMatthew G. Knepley PetscFunctionBegin; 28569b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28579b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2858292bffcbSToby Isaac PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 28594f572ea9SToby Isaac if (vals) PetscAssertPointer(vals, 5); 28604f572ea9SToby Isaac PetscAssertPointer(integral, 7); 28619566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 28629566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 28639566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 28649566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 28659566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 28669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 28679b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 28689566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 28699566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 28709566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 28719566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 28729b6f715bSMatthew G. Knepley /* Loop over label values */ 28739566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(integral, Nf)); 28749b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 28759b6f715bSMatthew G. Knepley IS pointIS; 28769b6f715bSMatthew G. Knepley PetscInt numFaces, face; 28779b6f715bSMatthew G. Knepley PetscScalar *fintegral; 28789b6f715bSMatthew G. Knepley 28799566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS)); 28809b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 28819b6f715bSMatthew G. Knepley { 28829b6f715bSMatthew G. Knepley IS isectIS; 28839b6f715bSMatthew G. Knepley 28849b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 28859566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 28869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 28879b6f715bSMatthew G. Knepley pointIS = isectIS; 28889b6f715bSMatthew G. Knepley } 28899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 28909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numFaces * Nf, &fintegral)); 289179ab67a3SMatthew G. Knepley PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, funcs, fintegral, user)); 28929b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 28939371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 28949371c9d4SSatish Balay for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f]; 28959566063dSJacob Faibussowitsch PetscCall(PetscFree(fintegral)); 28969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 28979b6f715bSMatthew G. Knepley } 28989566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 28999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 29009566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 29013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 290264c72086SMatthew G. Knepley } 290364c72086SMatthew G. Knepley 2904d69c5d34SMatthew G. Knepley /*@ 29050318f8a0SStefano Zampini DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix from the coarse `DM` to a uniformly refined `DM`. 2906d69c5d34SMatthew G. Knepley 2907d69c5d34SMatthew G. Knepley Input Parameters: 2908cf51de39SMatthew G. Knepley + dmc - The coarse mesh 2909cf51de39SMatthew G. Knepley . dmf - The fine mesh 2910cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology 2911d69c5d34SMatthew G. Knepley - user - The user context 2912d69c5d34SMatthew G. Knepley 2913d69c5d34SMatthew G. Knepley Output Parameter: 2914934789fcSMatthew G. Knepley . In - The interpolation matrix 2915d69c5d34SMatthew G. Knepley 2916d69c5d34SMatthew G. Knepley Level: developer 2917d69c5d34SMatthew G. Knepley 2918ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()` 2919d69c5d34SMatthew G. Knepley @*/ 2920d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user) 2921d71ae5a4SJacob Faibussowitsch { 2922d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmc->data; 2923d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 2924d69c5d34SMatthew G. Knepley PetscFE *feRef; 292597c42addSMatthew G. Knepley PetscFV *fvRef; 2926d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2927d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2928d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 2929485ad865SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 29302ea9c922SToby Isaac PetscInt cTotDim = 0, rTotDim = 0; 2931d69c5d34SMatthew G. Knepley 2932d69c5d34SMatthew G. Knepley PetscFunctionBegin; 29339566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 29349566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 29359566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 29369566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 29379566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 29389566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 29399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 29409566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 29419566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef)); 2942d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 29432ea9c922SToby Isaac PetscObject obj, objc; 29442ea9c922SToby Isaac PetscClassId id, idc; 29452ea9c922SToby Isaac PetscInt rNb = 0, Nc = 0, cNb = 0; 2946d69c5d34SMatthew G. Knepley 29479566063dSJacob Faibussowitsch PetscCall(DMGetField(dmf, f, NULL, &obj)); 29489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 294997c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 295097c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 295197c42addSMatthew G. Knepley 2952cf51de39SMatthew G. Knepley if (isRefined) { 29539566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 2954cf51de39SMatthew G. Knepley } else { 29559566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fe)); 2956cf51de39SMatthew G. Knepley feRef[f] = fe; 2957cf51de39SMatthew G. Knepley } 29589566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &rNb)); 29599566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 296097c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 296197c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 296297c42addSMatthew G. Knepley PetscDualSpace Q; 296397c42addSMatthew G. Knepley 2964cf51de39SMatthew G. Knepley if (isRefined) { 29659566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 2966cf51de39SMatthew G. Knepley } else { 29679566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fv)); 2968cf51de39SMatthew G. Knepley fvRef[f] = fv; 2969cf51de39SMatthew G. Knepley } 29709566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 29719566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &rNb)); 29729566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 29739566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 297497c42addSMatthew G. Knepley } 29759566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, f, NULL, &objc)); 29769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(objc, &idc)); 29772ea9c922SToby Isaac if (idc == PETSCFE_CLASSID) { 29782ea9c922SToby Isaac PetscFE fe = (PetscFE)objc; 29792ea9c922SToby Isaac 29809566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cNb)); 29812ea9c922SToby Isaac } else if (id == PETSCFV_CLASSID) { 29822ea9c922SToby Isaac PetscFV fv = (PetscFV)obj; 29832ea9c922SToby Isaac PetscDualSpace Q; 29842ea9c922SToby Isaac 29859566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 29869566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &cNb)); 2987d69c5d34SMatthew G. Knepley } 29882ea9c922SToby Isaac rTotDim += rNb; 29892ea9c922SToby Isaac cTotDim += cNb; 29902ea9c922SToby Isaac } 29919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat)); 29929566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim)); 2993d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2994d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2995d69c5d34SMatthew G. Knepley PetscQuadrature f; 2996d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2997d69c5d34SMatthew G. Knepley PetscReal *points; 2998d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2999d69c5d34SMatthew G. Knepley 3000d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 300197c42addSMatthew G. Knepley if (feRef[fieldI]) { 30029566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref)); 30039566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc)); 300497c42addSMatthew G. Knepley } else { 30059566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref)); 30069566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc)); 300797c42addSMatthew G. Knepley } 30089566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim)); 3009d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 30109566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 30119566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL)); 3012d69c5d34SMatthew G. Knepley npoints += Np; 3013d69c5d34SMatthew G. Knepley } 30149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npoints * dim, &points)); 3015d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 30169566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 30179566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL)); 30189371c9d4SSatish Balay for (p = 0; p < Np; ++p, ++k) 30199371c9d4SSatish Balay for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d]; 3020d69c5d34SMatthew G. Knepley } 3021d69c5d34SMatthew G. Knepley 3022d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 302397c42addSMatthew G. Knepley PetscObject obj; 302497c42addSMatthew G. Knepley PetscClassId id; 30259c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 3026d69c5d34SMatthew G. Knepley 30279566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, fieldJ, NULL, &obj)); 30289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 302997c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 303097c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 3031ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 3032d69c5d34SMatthew G. Knepley 3033d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 30349566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &NcJ)); 30359566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 3036ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 3037ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 303863a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 30399566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T)); 3040d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 30419566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 30429566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 304363a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 3044d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 304536a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3046d172c84bSMatthew G. Knepley /* 3047d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 3048d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 3049d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 3050d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 3051d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 3052d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 3053d172c84bSMatthew G. Knepley */ 3054ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c]; 305536a6d9c0SMatthew G. Knepley } 3056d69c5d34SMatthew G. Knepley } 3057d69c5d34SMatthew G. Knepley } 30589566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 3059ffe73a53SMatthew G. Knepley } 306097c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 306197c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 306297c42addSMatthew G. Knepley 306397c42addSMatthew G. Knepley /* Evaluate constant function at points */ 30649566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcJ)); 306597c42addSMatthew G. Knepley cpdim = 1; 306697c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 306797c42addSMatthew G. Knepley if (fieldI == fieldJ) { 306863a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 306997c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 30709566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 30719566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 307263a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 307397c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 307497c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3075458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c]; 307697c42addSMatthew G. Knepley } 307797c42addSMatthew G. Knepley } 307897c42addSMatthew G. Knepley } 307997c42addSMatthew G. Knepley } 308097c42addSMatthew G. Knepley } 3081d172c84bSMatthew G. Knepley offsetJ += cpdim; 3082d69c5d34SMatthew G. Knepley } 3083d172c84bSMatthew G. Knepley offsetI += fpdim; 30849566063dSJacob Faibussowitsch PetscCall(PetscFree(points)); 3085d69c5d34SMatthew G. Knepley } 30869566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat)); 30877f5b169aSMatthew G. Knepley /* Preallocate matrix */ 30887f5b169aSMatthew G. Knepley { 3089c094ef40SMatthew G. Knepley Mat preallocator; 3090c094ef40SMatthew G. Knepley PetscScalar *vals; 3091c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 3092c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 30937f5b169aSMatthew G. Knepley 30949566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 30959566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator)); 30969566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 30979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 30989566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 30999566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices)); 31007f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3101cf51de39SMatthew G. Knepley if (isRefined) { 31029566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices)); 31039566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES)); 3104cf51de39SMatthew G. Knepley } else { 3105e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, preallocator, cell, vals, INSERT_VALUES)); 3106cf51de39SMatthew G. Knepley } 31077f5b169aSMatthew G. Knepley } 31089566063dSJacob Faibussowitsch PetscCall(PetscFree3(vals, cellCIndices, cellFIndices)); 31099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 31109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 31119566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In)); 31129566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 31137f5b169aSMatthew G. Knepley } 31147f5b169aSMatthew G. Knepley /* Fill matrix */ 31159566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(In)); 3116d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 3117cf51de39SMatthew G. Knepley if (isRefined) { 31189566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 3119cf51de39SMatthew G. Knepley } else { 3120e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, PETSC_FALSE, dmc, csection, cglobalSection, PETSC_FALSE, In, c, elemMat, INSERT_VALUES)); 3121cf51de39SMatthew G. Knepley } 3122d69c5d34SMatthew G. Knepley } 31239566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f])); 31249566063dSJacob Faibussowitsch PetscCall(PetscFree2(feRef, fvRef)); 31259566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 31269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 31279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 31289318fe57SMatthew G. Knepley if (mesh->printFEM > 1) { 31299566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name)); 31302ce66baaSPierre Jolivet PetscCall(MatFilter(In, 1.0e-10, PETSC_FALSE, PETSC_FALSE)); 31319566063dSJacob Faibussowitsch PetscCall(MatView(In, NULL)); 3132d69c5d34SMatthew G. Knepley } 31339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 31343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3135d69c5d34SMatthew G. Knepley } 31366c73c22cSMatthew G. Knepley 3137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 3138d71ae5a4SJacob Faibussowitsch { 3139bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness"); 3140bd041c0cSMatthew G. Knepley } 3141bd041c0cSMatthew G. Knepley 314268132eb9SMatthew G. Knepley /*@ 31430318f8a0SStefano Zampini DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix from the coarse `DM` to a non-nested fine `DM`. 314468132eb9SMatthew G. Knepley 314568132eb9SMatthew G. Knepley Input Parameters: 314668132eb9SMatthew G. Knepley + dmf - The fine mesh 314768132eb9SMatthew G. Knepley . dmc - The coarse mesh 314868132eb9SMatthew G. Knepley - user - The user context 314968132eb9SMatthew G. Knepley 315068132eb9SMatthew G. Knepley Output Parameter: 315168132eb9SMatthew G. Knepley . In - The interpolation matrix 315268132eb9SMatthew G. Knepley 315368132eb9SMatthew G. Knepley Level: developer 315468132eb9SMatthew G. Knepley 3155ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()` 315668132eb9SMatthew G. Knepley @*/ 3157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 3158d71ae5a4SJacob Faibussowitsch { 315964e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 316064e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 31614ef9d792SMatthew G. Knepley PetscDS prob; 3162a0806964SMatthew G. Knepley Mat interp; 3163a0806964SMatthew G. Knepley PetscSection fsection, globalFSection; 3164a0806964SMatthew G. Knepley PetscSection csection, globalCSection; 3165a0806964SMatthew G. Knepley PetscInt locRows, locCols; 31664ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 31674ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 31684ef9d792SMatthew G. Knepley PetscScalar *elemMat; 3169a0806964SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s; 31704ef9d792SMatthew G. Knepley 31714ef9d792SMatthew G. Knepley PetscFunctionBegin; 31729566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 31739566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 31749566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 31759566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 31769566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 31779566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 31789566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 31799566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 31809566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 31819566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 31829566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 3183a0806964SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd)); 31849566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 31859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 31864ef9d792SMatthew G. Knepley 3187a0806964SMatthew G. Knepley PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 3188a0806964SMatthew G. Knepley PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp)); 3189a0806964SMatthew G. Knepley PetscCall(MatSetType(interp, MATPREALLOCATOR)); 3190a0806964SMatthew G. Knepley PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 3191a0806964SMatthew G. Knepley PetscCall(MatSetUp(interp)); 3192a0806964SMatthew G. Knepley for (s = 0; s < 2; ++s) { 31934ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 31944ef9d792SMatthew G. Knepley PetscObject obj; 31954ef9d792SMatthew G. Knepley PetscClassId id; 3196c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 3197ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 31984ef9d792SMatthew G. Knepley PetscQuadrature f; 31994ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 3200d0f6233fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, off, i, d; 32014ef9d792SMatthew G. Knepley 3202d0f6233fSMatthew G. Knepley PetscCall(PetscDSGetFieldOffset(prob, field, &off)); 32039566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 32049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 32054ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 32064ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 32074ef9d792SMatthew G. Knepley 32089566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(fe, &Q)); 32099566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 3210a0806964SMatthew G. Knepley if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T)); 32114ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 32124ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 32134ef9d792SMatthew G. Knepley 32149566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 32154ef9d792SMatthew G. Knepley Nc = 1; 321663a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 32179566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fpdim)); 32184ef9d792SMatthew G. Knepley /* For each fine grid cell */ 32194ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 32204ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 32214ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 32224ef9d792SMatthew G. Knepley 32239566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 32249566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3225d0f6233fSMatthew G. Knepley PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim); 32264ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 32274ef9d792SMatthew G. Knepley Vec pointVec; 32284ef9d792SMatthew G. Knepley PetscScalar *pV; 322912111d7cSToby Isaac PetscSF coarseCellSF = NULL; 32303a93e3b7SToby Isaac const PetscSFNode *coarseCells; 3231d0f6233fSMatthew G. Knepley PetscInt numCoarseCells, cpdim, row = findices[i + off], q, c, j; 32324ef9d792SMatthew G. Knepley 32334ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 32349566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Q, i, &f)); 32359566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights)); 323663a3b9bcSJacob Faibussowitsch PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc); 32379566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec)); 32389566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 32399566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 32404ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 3241c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3242c330f8ffSToby Isaac 32434ef9d792SMatthew G. Knepley /* Transform point to real space */ 3244c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 32454ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 32464ef9d792SMatthew G. Knepley } 32479566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 32484ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 32491555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 32509566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 32514ef9d792SMatthew G. Knepley /* Update preallocation info */ 32529566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 32535f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 32549566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 32554ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3256826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 3257c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3258826eb36dSMatthew G. Knepley 32599566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3260a0806964SMatthew G. Knepley if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim)); 3261a0806964SMatthew G. Knepley else cpdim = 1; 3262a0806964SMatthew G. Knepley 3263a0806964SMatthew G. Knepley if (s) { 32644ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 32659566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3266e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 3267c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 32684ef9d792SMatthew G. Knepley 32694ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 32704ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 3271a0806964SMatthew G. Knepley PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T)); 32729566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 32734ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 32744ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3275ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c]; 32764ef9d792SMatthew G. Knepley } 32774ef9d792SMatthew G. Knepley } else { 32784ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 32799c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c]; 32804ef9d792SMatthew G. Knepley } 32814ef9d792SMatthew G. Knepley } 32829566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 3283a0806964SMatthew G. Knepley } 3284a0806964SMatthew G. Knepley /* Update interpolator */ 3285d0f6233fSMatthew G. Knepley PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim); 3286a0806964SMatthew G. Knepley PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES)); 32879566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 32884ef9d792SMatthew G. Knepley } 32899566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 32909566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 32919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 32924ef9d792SMatthew G. Knepley } 32939566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 32944ef9d792SMatthew G. Knepley } 3295a0806964SMatthew G. Knepley if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3296a0806964SMatthew G. Knepley } 3297a0806964SMatthew G. Knepley if (!s) { 3298a0806964SMatthew G. Knepley PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY)); 3299a0806964SMatthew G. Knepley PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY)); 3300a0806964SMatthew G. Knepley PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In)); 3301a0806964SMatthew G. Knepley PetscCall(MatDestroy(&interp)); 3302a0806964SMatthew G. Knepley interp = In; 3303a0806964SMatthew G. Knepley } 33044ef9d792SMatthew G. Knepley } 33059566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 33069566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 33079566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 33089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 33099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 33109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 33113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33124ef9d792SMatthew G. Knepley } 33134ef9d792SMatthew G. Knepley 331446fa42a0SMatthew G. Knepley /*@ 33150318f8a0SStefano Zampini DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix from the coarse `DM` to a non-nested fine `DM`. 3316bd041c0cSMatthew G. Knepley 3317bd041c0cSMatthew G. Knepley Input Parameters: 3318bd041c0cSMatthew G. Knepley + dmf - The fine mesh 3319bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 3320bd041c0cSMatthew G. Knepley - user - The user context 3321bd041c0cSMatthew G. Knepley 3322bd041c0cSMatthew G. Knepley Output Parameter: 3323bd041c0cSMatthew G. Knepley . mass - The mass matrix 3324bd041c0cSMatthew G. Knepley 3325bd041c0cSMatthew G. Knepley Level: developer 3326bd041c0cSMatthew G. Knepley 3327ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()` 3328bd041c0cSMatthew G. Knepley @*/ 3329d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 3330d71ae5a4SJacob Faibussowitsch { 3331bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 3332bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 3333bd041c0cSMatthew G. Knepley PetscDS prob; 3334bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 3335e8f14785SLisandro Dalcin PetscHSetIJ ht; 3336bd041c0cSMatthew G. Knepley PetscLayout rLayout; 3337bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 3338bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 3339bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 3340bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 3341bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 3342bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 3343bd041c0cSMatthew G. Knepley 3344bd041c0cSMatthew G. Knepley PetscFunctionBegin; 33459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 33469566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 33479566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 33489566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 33499566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 33509566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 33519566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 33529566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 33539566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 33549566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 33559566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd)); 33569566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 33579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 3358bd041c0cSMatthew G. Knepley 33599566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mass, &locRows, NULL)); 33609566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout)); 33619566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(rLayout, locRows)); 33629566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(rLayout, 1)); 33639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rLayout)); 33649566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd)); 33659566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rLayout)); 33669566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz)); 33679566063dSJacob Faibussowitsch PetscCall(PetscHSetIJCreate(&ht)); 3368bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3369bd041c0cSMatthew G. Knepley PetscObject obj; 3370bd041c0cSMatthew G. Knepley PetscClassId id; 3371bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3372bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 3373bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3374bd041c0cSMatthew G. Knepley 33759566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 33769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 33779566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 33789566063dSJacob Faibussowitsch else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 33799566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL)); 3380bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3381bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3382bd041c0cSMatthew G. Knepley Vec pointVec; 3383bd041c0cSMatthew G. Knepley PetscScalar *pV; 3384bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3385bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3386bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 3387bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3388bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3389bd041c0cSMatthew G. Knepley 33909566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 33919566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3392bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 33939566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 33949566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 33959566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3396bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3397c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3398c330f8ffSToby Isaac 3399bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3400c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3401bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3402bd041c0cSMatthew G. Knepley } 34039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3404bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 34059566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 34069566063dSJacob Faibussowitsch PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view")); 3407bd041c0cSMatthew G. Knepley /* Update preallocation info */ 34089566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 34095f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 3410bd041c0cSMatthew G. Knepley { 3411e8f14785SLisandro Dalcin PetscHashIJKey key; 3412e8f14785SLisandro Dalcin PetscBool missing; 3413bd041c0cSMatthew G. Knepley 3414bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 3415e8f14785SLisandro Dalcin key.i = findices[i]; 3416e8f14785SLisandro Dalcin if (key.i >= 0) { 3417bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 3418bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 34199566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3420bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 3421e8f14785SLisandro Dalcin key.j = cindices[c]; 3422e8f14785SLisandro Dalcin if (key.j < 0) continue; 34239566063dSJacob Faibussowitsch PetscCall(PetscHSetIJQueryAdd(ht, key, &missing)); 3424bd041c0cSMatthew G. Knepley if (missing) { 3425e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart]; 3426e8f14785SLisandro Dalcin else ++onz[key.i - rStart]; 3427bd041c0cSMatthew G. Knepley } 3428bd041c0cSMatthew G. Knepley } 34299566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3430bd041c0cSMatthew G. Knepley } 3431bd041c0cSMatthew G. Knepley } 3432bd041c0cSMatthew G. Knepley } 3433bd041c0cSMatthew G. Knepley } 34349566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 34359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 34369566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3437bd041c0cSMatthew G. Knepley } 3438bd041c0cSMatthew G. Knepley } 34399566063dSJacob Faibussowitsch PetscCall(PetscHSetIJDestroy(&ht)); 34409566063dSJacob Faibussowitsch PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL)); 34419566063dSJacob Faibussowitsch PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 34429566063dSJacob Faibussowitsch PetscCall(PetscFree2(dnz, onz)); 3443bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3444bd041c0cSMatthew G. Knepley PetscObject obj; 3445bd041c0cSMatthew G. Knepley PetscClassId id; 3446ef0bb6c7SMatthew G. Knepley PetscTabulation T, Tfine; 3447bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3448bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 3449bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3450bd041c0cSMatthew G. Knepley 34519566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 34529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 3453ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 34549566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 34559566063dSJacob Faibussowitsch PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine)); 34569566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T)); 3457ef0bb6c7SMatthew G. Knepley } else { 34589566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 3459ef0bb6c7SMatthew G. Knepley } 34609566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights)); 3461bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3462bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3463bd041c0cSMatthew G. Knepley Vec pointVec; 3464bd041c0cSMatthew G. Knepley PetscScalar *pV; 3465bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3466bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3467bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 3468bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3469bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3470bd041c0cSMatthew G. Knepley 34719566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 34729566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3473bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 34749566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 34759566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 34769566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3477bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3478c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3479c330f8ffSToby Isaac 3480bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3481c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3482bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3483bd041c0cSMatthew G. Knepley } 34849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3485bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 34869566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 3487bd041c0cSMatthew G. Knepley /* Update matrix */ 34889566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 34895f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 34909566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3491bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3492bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 3493c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3494c330f8ffSToby Isaac 34959566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3496bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 34979566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3498bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 3499c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 3500bd041c0cSMatthew G. Knepley 3501bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 3502bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 3503bd041c0cSMatthew G. Knepley 3504bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 35059566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 35069566063dSJacob Faibussowitsch PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T)); 3507bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 3508bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 35099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3510bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3511ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ; 3512bd041c0cSMatthew G. Knepley } 3513bd041c0cSMatthew G. Knepley /* Update interpolator */ 35149566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 351563a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 35169566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3517bd041c0cSMatthew G. Knepley } 3518bd041c0cSMatthew G. Knepley } else { 3519bd041c0cSMatthew G. Knepley cpdim = 1; 3520bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 35219566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3522bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3523bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ; 3524bd041c0cSMatthew G. Knepley } 3525bd041c0cSMatthew G. Knepley /* Update interpolator */ 35269566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 352763a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices)); 352863a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 35299566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3530bd041c0cSMatthew G. Knepley } 3531bd041c0cSMatthew G. Knepley } 35329566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3533bd041c0cSMatthew G. Knepley } 35349566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 35359566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 35369566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 35379566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3538bd041c0cSMatthew G. Knepley } 35399566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3540bd041c0cSMatthew G. Knepley } 35419566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 35429566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 35439566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 35449566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY)); 35459566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY)); 35463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3547bd041c0cSMatthew G. Knepley } 3548bd041c0cSMatthew G. Knepley 3549bd041c0cSMatthew G. Knepley /*@ 355046fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 355146fa42a0SMatthew G. Knepley 355246fa42a0SMatthew G. Knepley Input Parameters: 355346fa42a0SMatthew G. Knepley + dmc - The coarse mesh 355460225df5SJacob Faibussowitsch . dmf - The fine mesh 355546fa42a0SMatthew G. Knepley - user - The user context 355646fa42a0SMatthew G. Knepley 355746fa42a0SMatthew G. Knepley Output Parameter: 355846fa42a0SMatthew G. Knepley . sc - The mapping 355946fa42a0SMatthew G. Knepley 356046fa42a0SMatthew G. Knepley Level: developer 356146fa42a0SMatthew G. Knepley 3562ae3cf2c1SStefano Zampini .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()` 356346fa42a0SMatthew G. Knepley @*/ 3564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 3565d71ae5a4SJacob Faibussowitsch { 3566e9d4ef1bSMatthew G. Knepley PetscDS prob; 35677c927364SMatthew G. Knepley PetscFE *feRef; 356897c42addSMatthew G. Knepley PetscFV *fvRef; 35697c927364SMatthew G. Knepley Vec fv, cv; 35707c927364SMatthew G. Knepley IS fis, cis; 35717c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 35727c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 3573485ad865SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m; 35746f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 35757c927364SMatthew G. Knepley 35767c927364SMatthew G. Knepley PetscFunctionBegin; 35779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 35789566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 35799566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 35809566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 35819566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 35829566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 35839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 35849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 35859566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 35869566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg)); 35877c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 358897c42addSMatthew G. Knepley PetscObject obj; 358997c42addSMatthew G. Knepley PetscClassId id; 3590aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 35917c927364SMatthew G. Knepley 35929566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 35939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 359497c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 359597c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 35966f3d3cbcSMatthew G. Knepley PetscSpace sp; 35979b2fc754SMatthew G. Knepley PetscInt maxDegree; 359897c42addSMatthew G. Knepley 35999566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 36009566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &fNb)); 36019566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 36029566063dSJacob Faibussowitsch PetscCall(PetscFEGetBasisSpace(fe, &sp)); 36039566063dSJacob Faibussowitsch PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree)); 36049b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 360597c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 360697c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 360797c42addSMatthew G. Knepley PetscDualSpace Q; 360897c42addSMatthew G. Knepley 36099566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 36109566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 36119566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fNb)); 36129566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 36136f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 361497c42addSMatthew G. Knepley } 3615d172c84bSMatthew G. Knepley fTotDim += fNb; 36167c927364SMatthew G. Knepley } 36179566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &cTotDim)); 36189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cTotDim, &cmap)); 36197c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 36207c927364SMatthew G. Knepley PetscFE feC; 362197c42addSMatthew G. Knepley PetscFV fvC; 36227c927364SMatthew G. Knepley PetscDualSpace QF, QC; 3623d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 36247c927364SMatthew G. Knepley 362597c42addSMatthew G. Knepley if (feRef[field]) { 36269566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC)); 36279566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feC, &NcC)); 36289566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[field], &NcF)); 36299566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[field], &QF)); 36309566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetOrder(QF, &order)); 36319566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 36329566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feC, &QC)); 36339566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 363497c42addSMatthew G. Knepley } else { 36359566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC)); 36369566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvC, &NcC)); 36379566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF)); 36389566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[field], &QF)); 36399566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 36409566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvC, &QC)); 36419566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 364297c42addSMatthew G. Knepley } 364363a3b9bcSJacob Faibussowitsch PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC); 36447c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 36457c927364SMatthew G. Knepley PetscQuadrature cfunc; 3646d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 3647d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 364897c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 36497c927364SMatthew G. Knepley 36509566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc)); 36519566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights)); 365263a3b9bcSJacob Faibussowitsch PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC); 36531dca8a05SBarry Smith PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 36547c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 36557c927364SMatthew G. Knepley PetscQuadrature ffunc; 3656d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 36577c927364SMatthew G. Knepley PetscReal sum = 0.0; 3658d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 36597c927364SMatthew G. Knepley 36609566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc)); 36619566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights)); 366263a3b9bcSJacob Faibussowitsch PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF); 36637c927364SMatthew G. Knepley if (NpC != NpF) continue; 36647c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 36657c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 3666d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]); 3667d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 3668d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + f; 366997c42addSMatthew G. Knepley found = PETSC_TRUE; 36707c927364SMatthew G. Knepley break; 36717c927364SMatthew G. Knepley } 367297c42addSMatthew G. Knepley if (!found) { 367397c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 3674d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 3675d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + 0; 367697c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 367797c42addSMatthew G. Knepley } 36787c927364SMatthew G. Knepley } 3679d172c84bSMatthew G. Knepley offsetC += cpdim; 3680d172c84bSMatthew G. Knepley offsetF += fpdim; 36817c927364SMatthew G. Knepley } 36829371c9d4SSatish Balay for (f = 0; f < Nf; ++f) { 36839371c9d4SSatish Balay PetscCall(PetscFEDestroy(&feRef[f])); 36849371c9d4SSatish Balay PetscCall(PetscFVDestroy(&fvRef[f])); 36859371c9d4SSatish Balay } 36869566063dSJacob Faibussowitsch PetscCall(PetscFree3(feRef, fvRef, needAvg)); 36877c927364SMatthew G. Knepley 36889566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmf, &fv)); 36899566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmc, &cv)); 36909566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(cv, &startC, &endC)); 36919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m)); 36929566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices)); 36939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &cindices)); 36949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &findices)); 36957c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 36967c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 36979566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices)); 36987c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 36990bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 3700d2457c26SMatthew G. Knepley PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, c, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]); 37017c927364SMatthew G. Knepley cindices[cellCIndices[d] - startC] = cellCIndices[d]; 37027c927364SMatthew G. Knepley findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]]; 37037c927364SMatthew G. Knepley } 37047c927364SMatthew G. Knepley } 37059566063dSJacob Faibussowitsch PetscCall(PetscFree(cmap)); 37069566063dSJacob Faibussowitsch PetscCall(PetscFree2(cellCIndices, cellFIndices)); 37077c927364SMatthew G. Knepley 37089566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis)); 37099566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis)); 37109566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(cv, cis, fv, fis, sc)); 37119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cis)); 37129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fis)); 37139566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmf, &fv)); 37149566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmc, &cv)); 37159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 37163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3717cb1e1211SMatthew G Knepley } 3718a1cf66bbSMatthew G. Knepley 37192f856554SMatthew G. Knepley /*@C 37202f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 37212f856554SMatthew G. Knepley 37222f856554SMatthew G. Knepley Input Parameters: 3723a1cb98faSBarry Smith + dm - The `DM` 37242f856554SMatthew G. Knepley . cellIS - The cells to include 37252f856554SMatthew G. Knepley . locX - A local vector with the solution fields 3726ce78bad3SBarry Smith . locX_t - A local vector with solution field time derivatives, or `NULL` 3727ce78bad3SBarry Smith - locA - A local vector with auxiliary fields, or `NULL` 37282f856554SMatthew G. Knepley 37292f856554SMatthew G. Knepley Output Parameters: 37302f856554SMatthew G. Knepley + u - The field coefficients 37312f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 37322f856554SMatthew G. Knepley - a - The auxiliary field coefficients 37332f856554SMatthew G. Knepley 37342f856554SMatthew G. Knepley Level: developer 37352f856554SMatthew G. Knepley 37361cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 37372f856554SMatthew G. Knepley @*/ 3738ce78bad3SBarry Smith PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, PeOp Vec locX_t, PeOp Vec locA, PetscScalar *u[], PetscScalar *u_t[], PetscScalar *a[]) 3739d71ae5a4SJacob Faibussowitsch { 37402f856554SMatthew G. Knepley DM plex, plexA = NULL; 3741a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 37422f856554SMatthew G. Knepley PetscSection section, sectionAux; 37432f856554SMatthew G. Knepley PetscDS prob; 37442f856554SMatthew G. Knepley const PetscInt *cells; 37452f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 37462f856554SMatthew G. Knepley 37472f856554SMatthew G. Knepley PetscFunctionBegin; 37482f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3749064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 3750ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); 3751ad540459SPierre Jolivet if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); 37524f572ea9SToby Isaac PetscAssertPointer(u, 6); 37534f572ea9SToby Isaac PetscAssertPointer(u_t, 7); 37544f572ea9SToby Isaac PetscAssertPointer(a, 8); 37559566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 37569566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 37579566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 375807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 37599566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 37602f856554SMatthew G. Knepley if (locA) { 37612f856554SMatthew G. Knepley DM dmAux; 37622f856554SMatthew G. Knepley PetscDS probAux; 37632f856554SMatthew G. Knepley 37649566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 37659566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 37669566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 37679566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 37689566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 37699566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 37702f856554SMatthew G. Knepley } 37712f856554SMatthew G. Knepley numCells = cEnd - cStart; 37729566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 37739371c9d4SSatish Balay if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 3774ad540459SPierre Jolivet else *u_t = NULL; 37759371c9d4SSatish Balay if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 3776ad540459SPierre Jolivet else *a = NULL; 37772f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 37782f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 37792f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 37802f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 37812f856554SMatthew G. Knepley PetscInt i; 37822f856554SMatthew G. Knepley 37839566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x)); 37842f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i]; 37859566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x)); 37862f856554SMatthew G. Knepley if (locX_t) { 37879566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t)); 37882f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i]; 37899566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t)); 37902f856554SMatthew G. Knepley } 37912f856554SMatthew G. Knepley if (locA) { 37922f856554SMatthew G. Knepley PetscInt subcell; 37939566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 37949566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 37952f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i]; 37969566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 37972f856554SMatthew G. Knepley } 37982f856554SMatthew G. Knepley } 37999566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 38009566063dSJacob Faibussowitsch if (locA) PetscCall(DMDestroy(&plexA)); 38019566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 38023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38032f856554SMatthew G. Knepley } 38042f856554SMatthew G. Knepley 38052f856554SMatthew G. Knepley /*@C 38062f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 38072f856554SMatthew G. Knepley 38082f856554SMatthew G. Knepley Input Parameters: 3809a1cb98faSBarry Smith + dm - The `DM` 38102f856554SMatthew G. Knepley . cellIS - The cells to include 38112f856554SMatthew G. Knepley . locX - A local vector with the solution fields 3812ce78bad3SBarry Smith . locX_t - A local vector with solution field time derivatives, or `NULL` 3813ce78bad3SBarry Smith - locA - A local vector with auxiliary fields, or `NULL` 38142f856554SMatthew G. Knepley 38152f856554SMatthew G. Knepley Output Parameters: 38162f856554SMatthew G. Knepley + u - The field coefficients 38172f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 38182f856554SMatthew G. Knepley - a - The auxiliary field coefficients 38192f856554SMatthew G. Knepley 38202f856554SMatthew G. Knepley Level: developer 38212f856554SMatthew G. Knepley 38221cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 38232f856554SMatthew G. Knepley @*/ 3824ce78bad3SBarry Smith PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, PeOp Vec locX_t, PeOp Vec locA, PetscScalar *u[], PetscScalar *u_t[], PetscScalar *a[]) 3825d71ae5a4SJacob Faibussowitsch { 38262f856554SMatthew G. Knepley PetscFunctionBegin; 38279566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u)); 38289566063dSJacob Faibussowitsch if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t)); 38299566063dSJacob Faibussowitsch if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a)); 38303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38312f856554SMatthew G. Knepley } 38322f856554SMatthew G. Knepley 3833a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3834d71ae5a4SJacob Faibussowitsch { 383507218a29SMatthew G. Knepley DM plex, plexA = NULL; 383607218a29SMatthew G. Knepley DMEnclosureType encAux; 383707218a29SMatthew G. Knepley PetscSection section, sectionAux; 383807218a29SMatthew G. Knepley PetscDS ds, dsIn; 38396528b96dSMatthew G. Knepley const PetscInt *cells; 384007218a29SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, totDim, totDimAux, Nf, f; 38416528b96dSMatthew G. Knepley 38426528b96dSMatthew G. Knepley PetscFunctionBegin; 384307218a29SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 384407218a29SMatthew G. Knepley PetscValidHeaderSpecific(cellIS, IS_CLASSID, 2); 384507218a29SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 384607218a29SMatthew G. Knepley if (locX_t) { PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); } 384707218a29SMatthew G. Knepley if (locA) { PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); } 38484f572ea9SToby Isaac PetscAssertPointer(u, 6); 38494f572ea9SToby Isaac PetscAssertPointer(u_t, 7); 38504f572ea9SToby Isaac PetscAssertPointer(a, 8); 385107218a29SMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 385207218a29SMatthew G. Knepley numCells = cEnd - cStart; 385307218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 385407218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dm, §ion)); 385507218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 385607218a29SMatthew G. Knepley PetscCall(PetscDSGetNumFields(dsIn, &Nf)); 385707218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDim)); 385807218a29SMatthew G. Knepley if (locA) { 385907218a29SMatthew G. Knepley DM dmAux; 386007218a29SMatthew G. Knepley PetscDS probAux; 386107218a29SMatthew G. Knepley 386207218a29SMatthew G. Knepley PetscCall(VecGetDM(locA, &dmAux)); 386307218a29SMatthew G. Knepley PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 386407218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 386507218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dmAux, §ionAux)); 386607218a29SMatthew G. Knepley PetscCall(DMGetDS(dmAux, &probAux)); 386707218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 386807218a29SMatthew G. Knepley } 386907218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 387007218a29SMatthew G. Knepley if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 387107218a29SMatthew G. Knepley else { 387207218a29SMatthew G. Knepley *u_t = NULL; 387307218a29SMatthew G. Knepley } 387407218a29SMatthew G. Knepley if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 387507218a29SMatthew G. Knepley else { 387607218a29SMatthew G. Knepley *a = NULL; 387707218a29SMatthew G. Knepley } 387807218a29SMatthew G. Knepley // Loop over cohesive cells 387907218a29SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 388007218a29SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 388107218a29SMatthew G. Knepley const PetscInt cind = c - cStart; 388274a0c561SMatthew G. Knepley PetscScalar *xf = NULL, *xc = NULL, *x = NULL, *xf_t = NULL, *xc_t = NULL; 38838e3a54c0SPierre Jolivet PetscScalar *ul = &(*u)[cind * totDim], *ul_t = PetscSafePointerPlusOffset(*u_t, cind * totDim); 388407218a29SMatthew G. Knepley const PetscInt *cone, *ornt; 388507218a29SMatthew G. Knepley PetscInt Nx = 0, Nxf, s; 388607218a29SMatthew G. Knepley 388707218a29SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cell, &cone)); 388807218a29SMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 388907218a29SMatthew G. Knepley // Put in cohesive unknowns 389007218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, &Nxf, &xf)); 389174a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &xf_t)); 389207218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 389307218a29SMatthew G. Knepley PetscInt fdofIn, foff, foffIn; 389407218a29SMatthew G. Knepley PetscBool cohesive; 389507218a29SMatthew G. Knepley 389607218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive)); 389707218a29SMatthew G. Knepley if (!cohesive) continue; 389807218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn)); 389907218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(ds, f, &foff)); 390007218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn)); 390107218a29SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + i] = xf[foff + i]; 390274a0c561SMatthew G. Knepley if (locX_t) 390374a0c561SMatthew G. Knepley for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + i] = xf_t[foff + i]; 390407218a29SMatthew G. Knepley Nx += fdofIn; 390507218a29SMatthew G. Knepley } 390607218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, &Nxf, &xf)); 390774a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &xf_t)); 390807218a29SMatthew G. Knepley // Loop over sides of surface 390907218a29SMatthew G. Knepley for (s = 0; s < 2; ++s) { 391007218a29SMatthew G. Knepley const PetscInt *support; 391107218a29SMatthew G. Knepley const PetscInt face = cone[s]; 3912989fa639SBrad Aagaard PetscDS dsC; 391307218a29SMatthew G. Knepley PetscInt ssize, ncell, Nxc; 391407218a29SMatthew G. Knepley 391507218a29SMatthew G. Knepley // I don't think I need the face to have 0 orientation in the hybrid cell 391607218a29SMatthew G. Knepley //PetscCheck(!ornt[s], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", face, cell, ornt[s]); 391707218a29SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, face, &support)); 391807218a29SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, face, &ssize)); 391907218a29SMatthew G. Knepley if (support[0] == cell) ncell = support[1]; 392007218a29SMatthew G. Knepley else if (support[1] == cell) ncell = support[0]; 392107218a29SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell); 392207218a29SMatthew G. Knepley // Get closure of both face and cell, stick in cell for normal fields and face for cohesive fields 3923989fa639SBrad Aagaard PetscCall(DMGetCellDS(dm, ncell, &dsC, NULL)); 392407218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, ncell, &Nxc, &xc)); 392574a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecGetClosure(plex, section, locX_t, ncell, NULL, &xc_t)); 392607218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 3927989fa639SBrad Aagaard PetscInt fdofIn, foffIn, foff; 392807218a29SMatthew G. Knepley PetscBool cohesive; 392907218a29SMatthew G. Knepley 393007218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(dsIn, f, &cohesive)); 393107218a29SMatthew G. Knepley if (cohesive) continue; 393207218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsIn, f, &fdofIn)); 3933989fa639SBrad Aagaard PetscCall(PetscDSGetFieldOffset(dsC, f, &foff)); 393407218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldOffsetCohesive(dsIn, f, &foffIn)); 3935989fa639SBrad Aagaard for (PetscInt i = 0; i < fdofIn; ++i) ul[foffIn + s * fdofIn + i] = xc[foff + i]; 393674a0c561SMatthew G. Knepley if (locX_t) 3937989fa639SBrad Aagaard for (PetscInt i = 0; i < fdofIn; ++i) ul_t[foffIn + s * fdofIn + i] = xc_t[foff + i]; 393807218a29SMatthew G. Knepley Nx += fdofIn; 393907218a29SMatthew G. Knepley } 394007218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, ncell, &Nxc, &xc)); 394174a0c561SMatthew G. Knepley if (locX_t) PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, ncell, NULL, &xc_t)); 394207218a29SMatthew G. Knepley } 394307218a29SMatthew G. Knepley PetscCheck(Nx == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for cell %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, cell, totDim); 394407218a29SMatthew G. Knepley 394507218a29SMatthew G. Knepley if (locA) { 394607218a29SMatthew G. Knepley PetscScalar *al = &(*a)[cind * totDimAux]; 394707218a29SMatthew G. Knepley PetscInt subcell; 394807218a29SMatthew G. Knepley 394907218a29SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 395007218a29SMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, &Nx, &x)); 395107218a29SMatthew G. Knepley PetscCheck(Nx == totDimAux, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subcell %" PetscInt_FMT "does not match DS size %" PetscInt_FMT, Nx, subcell, totDimAux); 395207218a29SMatthew G. Knepley for (PetscInt i = 0; i < totDimAux; ++i) al[i] = x[i]; 395307218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, &Nx, &x)); 395407218a29SMatthew G. Knepley } 395507218a29SMatthew G. Knepley } 395607218a29SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 395707218a29SMatthew G. Knepley PetscCall(DMDestroy(&plexA)); 395807218a29SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 395907218a29SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 396007218a29SMatthew G. Knepley } 396107218a29SMatthew G. Knepley 396207218a29SMatthew G. Knepley /* 39633e2b0218SMatthew G. Knepley DMPlexGetHybridFields - Get the field values for the negative side (s = 0) and positive side (s = 1) of the interface 396407218a29SMatthew G. Knepley 396507218a29SMatthew G. Knepley Input Parameters: 396607218a29SMatthew G. Knepley + dm - The full domain DM 396707218a29SMatthew G. Knepley . dmX - An array of DM for the field, say an auxiliary DM, indexed by s 396807218a29SMatthew G. Knepley . dsX - An array of PetscDS for the field, indexed by s 396907218a29SMatthew G. Knepley . cellIS - The interface cells for which we want values 397007218a29SMatthew G. Knepley . locX - An array of local vectors with the field values, indexed by s 397107218a29SMatthew G. Knepley - useCell - Flag to have values come from neighboring cell rather than endcap face 397207218a29SMatthew G. Knepley 397307218a29SMatthew G. Knepley Output Parameter: 397407218a29SMatthew G. Knepley . x - An array of field values, indexed by s 397507218a29SMatthew G. Knepley 397607218a29SMatthew G. Knepley Note: 397776fbde31SPierre Jolivet The arrays in `x` will be allocated using `DMGetWorkArray()`, and must be returned using `DMPlexRestoreHybridFields()`. 397807218a29SMatthew G. Knepley 397907218a29SMatthew G. Knepley Level: advanced 398007218a29SMatthew G. Knepley 398176fbde31SPierre Jolivet .seealso: `DMPlexRestoreHybridFields()`, `DMGetWorkArray()` 398207218a29SMatthew G. Knepley */ 398307218a29SMatthew G. Knepley static PetscErrorCode DMPlexGetHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[]) 398407218a29SMatthew G. Knepley { 398507218a29SMatthew G. Knepley DM plexX[2]; 398607218a29SMatthew G. Knepley DMEnclosureType encX[2]; 398707218a29SMatthew G. Knepley PetscSection sectionX[2]; 398807218a29SMatthew G. Knepley const PetscInt *cells; 398907218a29SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, s, totDimX[2]; 399007218a29SMatthew G. Knepley 399107218a29SMatthew G. Knepley PetscFunctionBegin; 39924f572ea9SToby Isaac PetscAssertPointer(locX, 5); 399307218a29SMatthew G. Knepley if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS); 39944f572ea9SToby Isaac PetscAssertPointer(dmX, 2); 39954f572ea9SToby Isaac PetscAssertPointer(dsX, 3); 399607218a29SMatthew G. Knepley PetscValidHeaderSpecific(cellIS, IS_CLASSID, 4); 39974f572ea9SToby Isaac PetscAssertPointer(x, 7); 39989566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 39996528b96dSMatthew G. Knepley numCells = cEnd - cStart; 4000148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 400107218a29SMatthew G. Knepley PetscValidHeaderSpecific(dmX[s], DM_CLASSID, 2); 400207218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsX[s], PETSCDS_CLASSID, 3); 400307218a29SMatthew G. Knepley PetscValidHeaderSpecific(locX[s], VEC_CLASSID, 5); 400407218a29SMatthew G. Knepley PetscCall(DMPlexConvertPlex(dmX[s], &plexX[s], PETSC_FALSE)); 400507218a29SMatthew G. Knepley PetscCall(DMGetEnclosureRelation(dmX[s], dm, &encX[s])); 400607218a29SMatthew G. Knepley PetscCall(DMGetLocalSection(dmX[s], §ionX[s])); 400707218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsX[s], &totDimX[s])); 400807218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dmX[s], numCells * totDimX[s], MPIU_SCALAR, &x[s])); 400904c51a94SMatthew G. Knepley } 4010148442b3SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 40116528b96dSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 40126528b96dSMatthew G. Knepley const PetscInt cind = c - cStart; 40136528b96dSMatthew G. Knepley const PetscInt *cone, *ornt; 40146528b96dSMatthew G. Knepley 40159566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 40169566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 401707218a29SMatthew G. Knepley //PetscCheck(!ornt[0], PETSC_COMM_SELF, PETSC_ERR_SUP, "Face %" PetscInt_FMT " in hybrid cell %" PetscInt_FMT " has orientation %" PetscInt_FMT " != 0", cone[0], cell, ornt[0]); 4018148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 401907218a29SMatthew G. Knepley const PetscInt tdX = totDimX[s]; 402007218a29SMatthew G. Knepley PetscScalar *closure = NULL, *xl = &x[s][cind * tdX]; 402107218a29SMatthew G. Knepley PetscInt face = cone[s], point = face, subpoint, Nx, i; 402207218a29SMatthew G. Knepley 402307218a29SMatthew G. Knepley if (useCell) { 40245fedec97SMatthew G. Knepley const PetscInt *support; 402507218a29SMatthew G. Knepley PetscInt ssize; 40266528b96dSMatthew G. Knepley 402707218a29SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, face, &support)); 402807218a29SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, face, &ssize)); 402907218a29SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", face, cell, ssize); 403007218a29SMatthew G. Knepley if (support[0] == cell) point = support[1]; 403107218a29SMatthew G. Knepley else if (support[1] == cell) point = support[0]; 403207218a29SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", face, cell); 403307218a29SMatthew G. Knepley } 403407218a29SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(plexX[s], dm, encX[s], point, &subpoint)); 4035e8e188d2SZach Atkins PetscCall(DMPlexVecGetOrientedClosure_Internal(plexX[s], sectionX[s], PETSC_FALSE, locX[s], subpoint, ornt[s], &Nx, &closure)); 403607218a29SMatthew G. Knepley PetscCheck(Nx == tdX, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Closure size %" PetscInt_FMT " for subpoint %" PetscInt_FMT " does not match DS size %" PetscInt_FMT, Nx, subpoint, tdX); 403707218a29SMatthew G. Knepley for (i = 0; i < Nx; ++i) xl[i] = closure[i]; 403807218a29SMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plexX[s], sectionX[s], locX[s], subpoint, &Nx, &closure)); 40396528b96dSMatthew G. Knepley } 40406528b96dSMatthew G. Knepley } 404107218a29SMatthew G. Knepley for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexX[s])); 40429566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 40433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 40446528b96dSMatthew G. Knepley } 40456528b96dSMatthew G. Knepley 404607218a29SMatthew G. Knepley static PetscErrorCode DMPlexRestoreHybridFields(DM dm, DM dmX[], PetscDS dsX[], IS cellIS, Vec locX[], PetscBool useCell, PetscScalar *x[]) 4047d71ae5a4SJacob Faibussowitsch { 40486528b96dSMatthew G. Knepley PetscFunctionBegin; 404907218a29SMatthew G. Knepley if (!locX[0] || !locX[1]) PetscFunctionReturn(PETSC_SUCCESS); 405007218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dmX[0], 0, MPIU_SCALAR, &x[0])); 405107218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dmX[1], 0, MPIU_SCALAR, &x[1])); 40523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 40536528b96dSMatthew G. Knepley } 40546528b96dSMatthew G. Knepley 40552f856554SMatthew G. Knepley /*@C 40562f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 40572f856554SMatthew G. Knepley 40582f856554SMatthew G. Knepley Input Parameters: 4059a1cb98faSBarry Smith + dm - The `DM` 40602f856554SMatthew G. Knepley . fStart - The first face to include 40612f856554SMatthew G. Knepley . fEnd - The first face to exclude 40622f856554SMatthew G. Knepley . locX - A local vector with the solution fields 4063ce78bad3SBarry Smith . locX_t - A local vector with solution field time derivatives, or `NULL` 40642f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 40652f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 4066ce78bad3SBarry Smith - locGrad - A local vector with field gradients, or `NULL` 40672f856554SMatthew G. Knepley 40682f856554SMatthew G. Knepley Output Parameters: 40692f856554SMatthew G. Knepley + Nface - The number of faces with field values 40702f856554SMatthew G. Knepley . uL - The field values at the left side of the face 40712f856554SMatthew G. Knepley - uR - The field values at the right side of the face 40722f856554SMatthew G. Knepley 40732f856554SMatthew G. Knepley Level: developer 40742f856554SMatthew G. Knepley 40751cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 40762f856554SMatthew G. Knepley @*/ 4077ce78bad3SBarry Smith PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, PeOp Vec locX_t, Vec faceGeometry, Vec cellGeometry, PeOp Vec locGrad, PetscInt *Nface, PetscScalar *uL[], PetscScalar *uR[]) 4078d71ae5a4SJacob Faibussowitsch { 40792f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 40802f856554SMatthew G. Knepley PetscSection section; 40812f856554SMatthew G. Knepley PetscDS prob; 40822f856554SMatthew G. Knepley DMLabel ghostLabel; 40832f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 40842f856554SMatthew G. Knepley PetscBool *isFE; 40852f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 40862f856554SMatthew G. Knepley 40872f856554SMatthew G. Knepley PetscFunctionBegin; 40882f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40892f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 4090ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5); 40912f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 40922f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 4093ad540459SPierre Jolivet if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8); 40944f572ea9SToby Isaac PetscAssertPointer(uL, 10); 40954f572ea9SToby Isaac PetscAssertPointer(uR, 11); 40969566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 40979566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 40989566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 40999566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 41009566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(prob, &Nc)); 41019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &isFE)); 41022f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 41032f856554SMatthew G. Knepley PetscObject obj; 41042f856554SMatthew G. Knepley PetscClassId id; 41052f856554SMatthew G. Knepley 41069566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 41079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 41089371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 41099371c9d4SSatish Balay isFE[f] = PETSC_TRUE; 41109371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 41119371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 41129371c9d4SSatish Balay } else { 41139371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 41149371c9d4SSatish Balay } 41152f856554SMatthew G. Knepley } 41169566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 41179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locX, &x)); 41189566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 41199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 41209566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 41219566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 41222f856554SMatthew G. Knepley if (locGrad) { 41239566063dSJacob Faibussowitsch PetscCall(VecGetDM(locGrad, &dmGrad)); 41249566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 41252f856554SMatthew G. Knepley } 41269566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL)); 41279566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR)); 41282f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 41292f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 41302f856554SMatthew G. Knepley const PetscInt *cells; 41312f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 41322f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 41332f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 41342f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 41352f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 41362f856554SMatthew G. Knepley 41379566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 41389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 41399566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 41402f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 41419566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 41429566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 41439566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 41449566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 41452f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 41462f856554SMatthew G. Knepley PetscInt off; 41472f856554SMatthew G. Knepley 41489566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffset(prob, f, &off)); 41492f856554SMatthew G. Knepley if (isFE[f]) { 41502f856554SMatthew G. Knepley const PetscInt *cone; 41512f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 41522f856554SMatthew G. Knepley 41532f856554SMatthew G. Knepley xL = xR = NULL; 41549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 4155835f2295SStefano Zampini PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, &xL)); 4156835f2295SStefano Zampini PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, &xR)); 41579566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[0], &cone)); 41589566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL)); 41599371c9d4SSatish Balay for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) 41609371c9d4SSatish Balay if (cone[faceLocL] == face) break; 41619566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[1], &cone)); 41629566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR)); 41639371c9d4SSatish Balay for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) 41649371c9d4SSatish Balay if (cone[faceLocR] == face) break; 41651dca8a05SBarry Smith PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]); 41662f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 41672f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 41682f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 41699566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off])); 41709566063dSJacob Faibussowitsch if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 41712f856554SMatthew G. Knepley else { 41729371c9d4SSatish Balay for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d]; 41739371c9d4SSatish Balay } 41749371c9d4SSatish Balay } else { 41759566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 41769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 41772f856554SMatthew G. Knepley for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d]; 41782f856554SMatthew G. Knepley } 4179835f2295SStefano Zampini PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, &xL)); 4180835f2295SStefano Zampini PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, &xR)); 41812f856554SMatthew G. Knepley } else { 41822f856554SMatthew G. Knepley PetscFV fv; 41832f856554SMatthew G. Knepley PetscInt numComp, c; 41842f856554SMatthew G. Knepley 41859566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv)); 41869566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &numComp)); 41879566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL)); 41889566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR)); 41892f856554SMatthew G. Knepley if (dmGrad) { 41902f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 41912f856554SMatthew G. Knepley 41929566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL)); 41939566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR)); 41942f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 41952f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 41962f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 41972f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL); 41982f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR); 41992f856554SMatthew G. Knepley } 42002f856554SMatthew G. Knepley } else { 42012f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 42022f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c]; 42032f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c]; 42042f856554SMatthew G. Knepley } 42052f856554SMatthew G. Knepley } 42062f856554SMatthew G. Knepley } 42072f856554SMatthew G. Knepley } 42082f856554SMatthew G. Knepley ++iface; 42092f856554SMatthew G. Knepley } 42102f856554SMatthew G. Knepley *Nface = iface; 42119566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locX, &x)); 42129566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 42139566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 421448a46eb9SPierre Jolivet if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 42159566063dSJacob Faibussowitsch PetscCall(PetscFree(isFE)); 42163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42172f856554SMatthew G. Knepley } 42182f856554SMatthew G. Knepley 42192f856554SMatthew G. Knepley /*@C 42202f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 42212f856554SMatthew G. Knepley 42222f856554SMatthew G. Knepley Input Parameters: 4223a1cb98faSBarry Smith + dm - The `DM` 42242f856554SMatthew G. Knepley . fStart - The first face to include 42252f856554SMatthew G. Knepley . fEnd - The first face to exclude 42262f856554SMatthew G. Knepley . locX - A local vector with the solution fields 4227ce78bad3SBarry Smith . locX_t - A local vector with solution field time derivatives, or `NULL` 42282f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 42292f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 4230ce78bad3SBarry Smith - locGrad - A local vector with field gradients, or `NULL` 42312f856554SMatthew G. Knepley 42322f856554SMatthew G. Knepley Output Parameters: 42332f856554SMatthew G. Knepley + Nface - The number of faces with field values 42342f856554SMatthew G. Knepley . uL - The field values at the left side of the face 42352f856554SMatthew G. Knepley - uR - The field values at the right side of the face 42362f856554SMatthew G. Knepley 42372f856554SMatthew G. Knepley Level: developer 42382f856554SMatthew G. Knepley 42391cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 42402f856554SMatthew G. Knepley @*/ 4241ce78bad3SBarry Smith PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, PeOp Vec locX_t, Vec faceGeometry, Vec cellGeometry, PeOp Vec locGrad, PetscInt *Nface, PetscScalar *uL[], PetscScalar *uR[]) 4242d71ae5a4SJacob Faibussowitsch { 42432f856554SMatthew G. Knepley PetscFunctionBegin; 42449566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL)); 42459566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR)); 42463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42472f856554SMatthew G. Knepley } 42482f856554SMatthew G. Knepley 42492f856554SMatthew G. Knepley /*@C 42502f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 42512f856554SMatthew G. Knepley 42522f856554SMatthew G. Knepley Input Parameters: 4253a1cb98faSBarry Smith + dm - The `DM` 42542f856554SMatthew G. Knepley . fStart - The first face to include 42552f856554SMatthew G. Knepley . fEnd - The first face to exclude 42562f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 42572f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 42582f856554SMatthew G. Knepley 42592f856554SMatthew G. Knepley Output Parameters: 42602f856554SMatthew G. Knepley + Nface - The number of faces with field values 4261ce78bad3SBarry Smith . fgeom - The face centroid and normals 4262ce78bad3SBarry Smith - vol - The cell volumes 42632f856554SMatthew G. Knepley 42642f856554SMatthew G. Knepley Level: developer 42652f856554SMatthew G. Knepley 42661cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 42672f856554SMatthew G. Knepley @*/ 4268ce78bad3SBarry Smith PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom *fgeom[], PetscReal *vol[]) 4269d71ae5a4SJacob Faibussowitsch { 42702f856554SMatthew G. Knepley DM dmFace, dmCell; 42712f856554SMatthew G. Knepley DMLabel ghostLabel; 42722f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 42732f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 42742f856554SMatthew G. Knepley 42752f856554SMatthew G. Knepley PetscFunctionBegin; 42762f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42772f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 42782f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 42794f572ea9SToby Isaac PetscAssertPointer(fgeom, 7); 42804f572ea9SToby Isaac PetscAssertPointer(vol, 8); 42819566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 42829566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 42839566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 42849566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 42859566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 42869566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 42879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFaces, fgeom)); 42889566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol)); 42892f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 42902f856554SMatthew G. Knepley const PetscInt *cells; 42912f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 42922f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 42932f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 42942f856554SMatthew G. Knepley PetscReal *voll = *vol; 42952f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 42962f856554SMatthew G. Knepley 42979566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 42989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 42999566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 43002f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 43019566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 43029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 43039566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 43049566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 43052f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 43062f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 43072f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 43082f856554SMatthew G. Knepley } 43092f856554SMatthew G. Knepley voll[iface * 2 + 0] = cgL->volume; 43102f856554SMatthew G. Knepley voll[iface * 2 + 1] = cgR->volume; 43112f856554SMatthew G. Knepley ++iface; 43122f856554SMatthew G. Knepley } 43132f856554SMatthew G. Knepley *Nface = iface; 43149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 43159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 43163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43172f856554SMatthew G. Knepley } 43182f856554SMatthew G. Knepley 43192f856554SMatthew G. Knepley /*@C 43202f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 43212f856554SMatthew G. Knepley 43222f856554SMatthew G. Knepley Input Parameters: 4323a1cb98faSBarry Smith + dm - The `DM` 43242f856554SMatthew G. Knepley . fStart - The first face to include 43252f856554SMatthew G. Knepley . fEnd - The first face to exclude 43262f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 43272f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 43282f856554SMatthew G. Knepley 43292f856554SMatthew G. Knepley Output Parameters: 43302f856554SMatthew G. Knepley + Nface - The number of faces with field values 4331ce78bad3SBarry Smith . fgeom - The face centroid and normals 4332ce78bad3SBarry Smith - vol - The cell volumes 43332f856554SMatthew G. Knepley 43342f856554SMatthew G. Knepley Level: developer 43352f856554SMatthew G. Knepley 43361cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 43372f856554SMatthew G. Knepley @*/ 4338ce78bad3SBarry Smith PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom *fgeom[], PetscReal *vol[]) 4339d71ae5a4SJacob Faibussowitsch { 43402f856554SMatthew G. Knepley PetscFunctionBegin; 43419566063dSJacob Faibussowitsch PetscCall(PetscFree(*fgeom)); 43429566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol)); 43433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43442f856554SMatthew G. Knepley } 43452f856554SMatthew G. Knepley 4346ac9d17c7SMatthew G. Knepley PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscFEGeomMode mode, PetscFEGeom **geom) 4347d71ae5a4SJacob Faibussowitsch { 4348a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 4349a1cf66bbSMatthew G. Knepley PetscObjectId id; 4350a1cf66bbSMatthew G. Knepley PetscContainer container; 4351a1cf66bbSMatthew G. Knepley 4352a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 43539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 435463a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id)); 43559566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 4356a1cf66bbSMatthew G. Knepley if (container) { 43579566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 4358a1cf66bbSMatthew G. Knepley } else { 4359ac9d17c7SMatthew G. Knepley PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, mode, geom)); 43609566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 43619566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 436249abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, PetscContainerCtxDestroy_PetscFEGeom)); 43639566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 43649566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 4365a1cf66bbSMatthew G. Knepley } 43663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4367a1cf66bbSMatthew G. Knepley } 4368a1cf66bbSMatthew G. Knepley 4369d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 4370d71ae5a4SJacob Faibussowitsch { 4371a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 4372a1cf66bbSMatthew G. Knepley *geom = NULL; 43733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4374a1cf66bbSMatthew G. Knepley } 4375a1cf66bbSMatthew G. Knepley 4376d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 4377d71ae5a4SJacob Faibussowitsch { 437892d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 437992d50984SMatthew G. Knepley const char *name = "Residual"; 438092d50984SMatthew G. Knepley DM dmAux = NULL; 438192d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 438292d50984SMatthew G. Knepley PetscDS prob = NULL; 438392d50984SMatthew G. Knepley PetscDS probAux = NULL; 438492d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 438592d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 438692d50984SMatthew G. Knepley DMField coordField = NULL; 4387c0006e53SPatrick Farrell Vec locA; 4388c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 438992d50984SMatthew G. Knepley IS chunkIS; 439092d50984SMatthew G. Knepley const PetscInt *cells; 439192d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 4392364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 43931690c2aeSBarry Smith PetscInt maxDegree = PETSC_INT_MAX; 439406ad1575SMatthew G. Knepley PetscFormKey key; 439592d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 439692d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 439792d50984SMatthew G. Knepley 439892d50984SMatthew G. Knepley PetscFunctionBegin; 43999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 440092d50984SMatthew G. Knepley /* FEM+FVM */ 440192d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 44029566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 44039566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 44049566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 44059566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 44069566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 440792d50984SMatthew G. Knepley if (locA) { 44089566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 44099566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 44109566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 441192d50984SMatthew G. Knepley } 441292d50984SMatthew G. Knepley /* 2: Get geometric data */ 441392d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 441492d50984SMatthew G. Knepley PetscObject obj; 441592d50984SMatthew G. Knepley PetscClassId id; 441692d50984SMatthew G. Knepley PetscBool fimp; 441792d50984SMatthew G. Knepley 44189566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 441992d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 44209566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 44219566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 4422ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 44235f80ce2aSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented"); 442492d50984SMatthew G. Knepley } 442592d50984SMatthew G. Knepley if (useFEM) { 44269566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 44279566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 442892d50984SMatthew G. Knepley if (maxDegree <= 1) { 44299566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 4430ac9d17c7SMatthew G. Knepley if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FEGEOM_BASIC, &affineGeom)); 443192d50984SMatthew G. Knepley } else { 44329566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 443392d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 443492d50984SMatthew G. Knepley PetscObject obj; 443592d50984SMatthew G. Knepley PetscClassId id; 443692d50984SMatthew G. Knepley PetscBool fimp; 443792d50984SMatthew G. Knepley 44389566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 443992d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 44409566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 44419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 444292d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 444392d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 444492d50984SMatthew G. Knepley 44459566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 44469566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 4447ac9d17c7SMatthew G. Knepley PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FEGEOM_BASIC, &geoms[f])); 444892d50984SMatthew G. Knepley } 444992d50984SMatthew G. Knepley } 445092d50984SMatthew G. Knepley } 445192d50984SMatthew G. Knepley } 445292d50984SMatthew G. Knepley /* Loop over chunks */ 44539566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 44549566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 44559566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 445692d50984SMatthew G. Knepley numCells = cEnd - cStart; 445792d50984SMatthew G. Knepley numChunks = 1; 445892d50984SMatthew G. Knepley cellChunkSize = numCells / numChunks; 445992d50984SMatthew G. Knepley numChunks = PetscMin(1, numCells); 44606528b96dSMatthew G. Knepley key.label = NULL; 44616528b96dSMatthew G. Knepley key.value = 0; 446206ad1575SMatthew G. Knepley key.part = 0; 446392d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 4464c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 4465c0006e53SPatrick Farrell PetscReal *vol = NULL; 4466c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 446792d50984SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 4468c0006e53SPatrick Farrell PetscInt numFaces = 0; 446992d50984SMatthew G. Knepley 447092d50984SMatthew G. Knepley /* Extract field coefficients */ 447192d50984SMatthew G. Knepley if (useFEM) { 44729566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 44739566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 44749566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 44759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 447692d50984SMatthew G. Knepley } 447792d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 447892d50984SMatthew G. Knepley /* Loop over fields */ 447992d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 448092d50984SMatthew G. Knepley PetscObject obj; 448192d50984SMatthew G. Knepley PetscClassId id; 448292d50984SMatthew G. Knepley PetscBool fimp; 448392d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 448492d50984SMatthew G. Knepley 44856528b96dSMatthew G. Knepley key.field = f; 44869566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 448792d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 44889566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 44899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 449092d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 449192d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 449292d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 449392d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 449492d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 449592d50984SMatthew G. Knepley PetscInt Nq, Nb; 449692d50984SMatthew G. Knepley 44979566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 44989566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 44999566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 450092d50984SMatthew G. Knepley blockSize = Nb; 450192d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 45029566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 450392d50984SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 450492d50984SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 450592d50984SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 450692d50984SMatthew G. Knepley offset = numCells - Nr; 450792d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 450892d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 45099566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 45109566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 45119566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 45128e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim])); 45139566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 451492d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 451592d50984SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 451692d50984SMatthew G. Knepley 451792d50984SMatthew G. Knepley Ne = numFaces; 451892d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 451992d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 45209566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 452163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 452292d50984SMatthew G. Knepley } 452392d50984SMatthew G. Knepley /* Loop over domain */ 452492d50984SMatthew G. Knepley if (useFEM) { 452592d50984SMatthew G. Knepley /* Add elemVec to locX */ 452692d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 452792d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 452892d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 452992d50984SMatthew G. Knepley 45309566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 453192d50984SMatthew G. Knepley if (ghostLabel) { 453292d50984SMatthew G. Knepley PetscInt ghostVal; 453392d50984SMatthew G. Knepley 45349566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 453592d50984SMatthew G. Knepley if (ghostVal > 0) continue; 453692d50984SMatthew G. Knepley } 45379566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 453892d50984SMatthew G. Knepley } 453992d50984SMatthew G. Knepley } 454092d50984SMatthew G. Knepley /* Handle time derivative */ 454192d50984SMatthew G. Knepley if (locX_t) { 454292d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 454392d50984SMatthew G. Knepley 45449566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 45459566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 454692d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 454792d50984SMatthew G. Knepley PetscFV fv; 454892d50984SMatthew G. Knepley PetscObject obj; 454992d50984SMatthew G. Knepley PetscClassId id; 455092d50984SMatthew G. Knepley PetscInt pdim, d; 455192d50984SMatthew G. Knepley 45529566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 45539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 455492d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 455592d50984SMatthew G. Knepley fv = (PetscFV)obj; 45569566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 455792d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 455892d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 455992d50984SMatthew G. Knepley PetscScalar *u_t, *r; 456092d50984SMatthew G. Knepley 456192d50984SMatthew G. Knepley if (ghostLabel) { 456292d50984SMatthew G. Knepley PetscInt ghostVal; 456392d50984SMatthew G. Knepley 45649566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 456592d50984SMatthew G. Knepley if (ghostVal > 0) continue; 456692d50984SMatthew G. Knepley } 45679566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 45689566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 456992d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 457092d50984SMatthew G. Knepley } 457192d50984SMatthew G. Knepley } 45729566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 45739566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 457492d50984SMatthew G. Knepley } 457592d50984SMatthew G. Knepley if (useFEM) { 45769566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 45779566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 457892d50984SMatthew G. Knepley } 457992d50984SMatthew G. Knepley } 45809566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 45819566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 4582754e4fbaSMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidualByKey) */ 458392d50984SMatthew G. Knepley if (useFEM) { 458492d50984SMatthew G. Knepley if (maxDegree <= 1) { 45859566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 45869566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 458792d50984SMatthew G. Knepley } else { 458892d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 45899566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 45909566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 459192d50984SMatthew G. Knepley } 45929566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 459392d50984SMatthew G. Knepley } 459492d50984SMatthew G. Knepley } 45959566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 45963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 459792d50984SMatthew G. Knepley } 459892d50984SMatthew G. Knepley 4599a1cf66bbSMatthew G. Knepley /* 4600a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 4601a1cf66bbSMatthew G. Knepley 4602a1cf66bbSMatthew G. Knepley X - The local solution vector 4603a5b23f4aSJose E. Roman X_t - The local solution time derivative vector, or NULL 4604a1cf66bbSMatthew G. Knepley */ 4605d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 4606d71ae5a4SJacob Faibussowitsch { 4607a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 4608a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 4609a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 4610a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 4611a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 4612a1cf66bbSMatthew G. Knepley Vec A; 4613a1cf66bbSMatthew G. Knepley DMField coordField; 4614a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 4615a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 4616a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 4617a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 4618e432b41dSStefano Zampini PetscBool hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE; 4619a1cf66bbSMatthew G. Knepley const PetscInt *cells; 462006ad1575SMatthew G. Knepley PetscFormKey key; 46219b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 4622a1cf66bbSMatthew G. Knepley 4623a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 46249566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 46259566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 46269566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 46279566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 46289566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A)); 46299a2a23afSMatthew G. Knepley if (A) { 46309566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 46319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 46329566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 4633a1cf66bbSMatthew G. Knepley } 4634a1cf66bbSMatthew G. Knepley /* Get flags */ 46359566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 46369566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 4637a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4638a1cf66bbSMatthew G. Knepley PetscObject disc; 4639a1cf66bbSMatthew G. Knepley PetscClassId id; 46409566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc)); 46419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 46429371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 46439371c9d4SSatish Balay isFE[fieldI] = PETSC_TRUE; 46449371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 46459371c9d4SSatish Balay hasFV = PETSC_TRUE; 46469371c9d4SSatish Balay isFE[fieldI] = PETSC_FALSE; 46479371c9d4SSatish Balay } 4648a1cf66bbSMatthew G. Knepley } 46499566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 46509566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 46519566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 4652a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 4653a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 46549566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */ 46559566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 46569566063dSJacob Faibussowitsch if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 4657a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 4658a1cf66bbSMatthew G. Knepley if (isFE[0]) { 4659a1cf66bbSMatthew G. Knepley PetscFE fe; 4660a1cf66bbSMatthew G. Knepley PetscQuadrature q; 4661a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 4662a1cf66bbSMatthew G. Knepley 46639566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 46649566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 46659566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL)); 46669566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 46679566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 4668a1cf66bbSMatthew G. Knepley blockSize = Nb * numQuadPoints; 4669a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 4670a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 4671a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 46729566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 4673a1cf66bbSMatthew G. Knepley } else { 4674a1cf66bbSMatthew G. Knepley chunkSize = numCells; 4675a1cf66bbSMatthew G. Knepley numChunks = 1; 4676a1cf66bbSMatthew G. Knepley } 4677a1cf66bbSMatthew G. Knepley /* Get work space */ 4678a1cf66bbSMatthew G. Knepley wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize; 46799566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work)); 46809566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(work, wsz)); 4681a1cf66bbSMatthew G. Knepley off = 0; 4682a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4683a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4684a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL; 4685a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4686a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4687a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 468863a3b9bcSJacob Faibussowitsch PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz); 4689a1cf66bbSMatthew G. Knepley /* Setup geometry */ 46909566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 46919566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 46929566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 4693a1cf66bbSMatthew G. Knepley if (!qGeom) { 4694a1cf66bbSMatthew G. Knepley PetscFE fe; 4695a1cf66bbSMatthew G. Knepley 46969566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 46979566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 46989566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 4699a1cf66bbSMatthew G. Knepley } 4700ac9d17c7SMatthew G. Knepley PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FEGEOM_BASIC, &cgeomFEM)); 4701a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 47029566063dSJacob Faibussowitsch if (assembleJac) PetscCall(MatZeroEntries(J)); 47039566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(JP)); 47046528b96dSMatthew G. Knepley key.label = NULL; 47056528b96dSMatthew G. Knepley key.value = 0; 470606ad1575SMatthew G. Knepley key.part = 0; 4707a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 4708a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 4709a1cf66bbSMatthew G. Knepley PetscInt c; 4710a1cf66bbSMatthew G. Knepley 4711a1cf66bbSMatthew G. Knepley /* Extract values */ 4712a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4713a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4714a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 4715a1cf66bbSMatthew G. Knepley PetscInt i; 4716a1cf66bbSMatthew G. Knepley 4717a1cf66bbSMatthew G. Knepley if (X) { 47189566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 4719a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 47209566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 4721a1cf66bbSMatthew G. Knepley } 4722a1cf66bbSMatthew G. Knepley if (X_t) { 47239566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 4724a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i]; 47259566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 4726a1cf66bbSMatthew G. Knepley } 4727a1cf66bbSMatthew G. Knepley if (dmAux) { 47289566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4729a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 47309566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4731a1cf66bbSMatthew G. Knepley } 4732a1cf66bbSMatthew G. Knepley } 4733a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4734a1cf66bbSMatthew G. Knepley PetscFE fe; 47359566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 4736a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 47376528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 47389566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat)); 47399566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP)); 47409566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD)); 4741a1cf66bbSMatthew G. Knepley } 4742a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 4743a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 4744a1cf66bbSMatthew G. Knepley PetscFV fv; 4745a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 4746a1cf66bbSMatthew G. Knepley 47479566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff)); 47489566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 47499566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 4750a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) { 4751a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 4752a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 4753ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 4754ad540459SPierre Jolivet if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0; 4755a1cf66bbSMatthew G. Knepley } 4756a1cf66bbSMatthew G. Knepley } 4757a1cf66bbSMatthew G. Knepley } 4758a1cf66bbSMatthew G. Knepley } 4759a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 47609371c9d4SSatish Balay if (hasDyn) { 47619371c9d4SSatish Balay for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 47629371c9d4SSatish Balay } 4763a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 4764a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4765a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4766a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 47679566063dSJacob Faibussowitsch if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim])); 47689566063dSJacob Faibussowitsch if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim])); 4769a1cf66bbSMatthew G. Knepley } 4770e8e188d2SZach Atkins if (assembleJac) PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 4771e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 4772a1cf66bbSMatthew G. Knepley } 4773a1cf66bbSMatthew G. Knepley } 4774a1cf66bbSMatthew G. Knepley /* Cleanup */ 47759566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 47769566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 47779566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 47789566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 47799566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work)); 4780a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 47819566063dSJacob Faibussowitsch /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */ 4782a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 47839371c9d4SSatish Balay if (assembleJac) { 47849371c9d4SSatish Balay PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 47859371c9d4SSatish Balay PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 47869371c9d4SSatish Balay } 47879371c9d4SSatish Balay PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 47889371c9d4SSatish Balay PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 47899566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 47903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4791a1cf66bbSMatthew G. Knepley } 47923e9753d6SMatthew G. Knepley 47934ee01570SBarry Smith /* FEM Assembly Function */ 47943e9753d6SMatthew G. Knepley 4795d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy) 4796d71ae5a4SJacob Faibussowitsch { 47973e9753d6SMatthew G. Knepley PetscBool isPlex; 47983e9753d6SMatthew G. Knepley 47993e9753d6SMatthew G. Knepley PetscFunctionBegin; 48009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 48013e9753d6SMatthew G. Knepley if (isPlex) { 48023e9753d6SMatthew G. Knepley *plex = dm; 48039566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 48043e9753d6SMatthew G. Knepley } else { 48059566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 48063e9753d6SMatthew G. Knepley if (!*plex) { 48079566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 48089566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 48093e9753d6SMatthew G. Knepley } else { 48109566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 48113e9753d6SMatthew G. Knepley } 4812cbf8eb3cSStefano Zampini if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 48133e9753d6SMatthew G. Knepley } 48143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48153e9753d6SMatthew G. Knepley } 48163e9753d6SMatthew G. Knepley 48173e9753d6SMatthew G. Knepley /*@ 48183e9753d6SMatthew G. Knepley DMPlexGetGeometryFVM - Return precomputed geometric data 48193e9753d6SMatthew G. Knepley 482020f4b53cSBarry Smith Collective 48213e9753d6SMatthew G. Knepley 48223e9753d6SMatthew G. Knepley Input Parameter: 4823a1cb98faSBarry Smith . dm - The `DM` 48243e9753d6SMatthew G. Knepley 48253e9753d6SMatthew G. Knepley Output Parameters: 48263e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry 48273e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry 4828ce78bad3SBarry Smith - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell, or `NULL` if not needed 48293e9753d6SMatthew G. Knepley 48303e9753d6SMatthew G. Knepley Level: developer 48313e9753d6SMatthew G. Knepley 48321cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()` 48333e9753d6SMatthew G. Knepley @*/ 4834ce78bad3SBarry Smith PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PeOp PetscReal *minRadius) 4835d71ae5a4SJacob Faibussowitsch { 48363e9753d6SMatthew G. Knepley DM plex; 48373e9753d6SMatthew G. Knepley 48383e9753d6SMatthew G. Knepley PetscFunctionBegin; 48393e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48409566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 48419566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL)); 48429566063dSJacob Faibussowitsch if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius)); 48439566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 48443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48453e9753d6SMatthew G. Knepley } 48463e9753d6SMatthew G. Knepley 48473e9753d6SMatthew G. Knepley /*@ 48483e9753d6SMatthew G. Knepley DMPlexGetGradientDM - Return gradient data layout 48493e9753d6SMatthew G. Knepley 485020f4b53cSBarry Smith Collective 48513e9753d6SMatthew G. Knepley 48523e9753d6SMatthew G. Knepley Input Parameters: 4853a1cb98faSBarry Smith + dm - The `DM` 485420f4b53cSBarry Smith - fv - The `PetscFV` 48553e9753d6SMatthew G. Knepley 48563e9753d6SMatthew G. Knepley Output Parameter: 48573e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values 48583e9753d6SMatthew G. Knepley 48593e9753d6SMatthew G. Knepley Level: developer 48603e9753d6SMatthew G. Knepley 48611cc06b55SBarry Smith .seealso: [](ch_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()` 48623e9753d6SMatthew G. Knepley @*/ 4863d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad) 4864d71ae5a4SJacob Faibussowitsch { 48653e9753d6SMatthew G. Knepley DM plex; 48663e9753d6SMatthew G. Knepley PetscBool computeGradients; 48673e9753d6SMatthew G. Knepley 48683e9753d6SMatthew G. Knepley PetscFunctionBegin; 48693e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48703e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2); 48714f572ea9SToby Isaac PetscAssertPointer(dmGrad, 3); 48729566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &computeGradients)); 48739371c9d4SSatish Balay if (!computeGradients) { 48749371c9d4SSatish Balay *dmGrad = NULL; 48753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48769371c9d4SSatish Balay } 48779566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 48789566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad)); 48799566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 48803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48813e9753d6SMatthew G. Knepley } 48823e9753d6SMatthew G. Knepley 4883*997bf629SMatthew G. Knepley /*@ 4884*997bf629SMatthew G. Knepley DMPlexComputeBdResidualSingleByKey - Compute the local boundary residual for terms matching the input key 4885*997bf629SMatthew G. Knepley 4886*997bf629SMatthew G. Knepley Not collective 4887*997bf629SMatthew G. Knepley 4888*997bf629SMatthew G. Knepley Input Parameters: 4889*997bf629SMatthew G. Knepley + dm - The output `DM` 4890*997bf629SMatthew G. Knepley . wf - The `PetscWeakForm` holding forms on this boundary 4891*997bf629SMatthew G. Knepley . key - The `PetscFormKey` indicating what should be integrated 4892*997bf629SMatthew G. Knepley . facetIS - The `IS` giving a set of faces to integrate over 4893*997bf629SMatthew G. Knepley . locX - The local solution 4894*997bf629SMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems 4895*997bf629SMatthew G. Knepley . t - The time 4896*997bf629SMatthew G. Knepley - coordField - The `DMField` object with coordinates for these faces 4897*997bf629SMatthew G. Knepley 4898*997bf629SMatthew G. Knepley Output Parameter: 4899*997bf629SMatthew G. Knepley . locF - The local residual 4900*997bf629SMatthew G. Knepley 4901*997bf629SMatthew G. Knepley Level: developer 4902*997bf629SMatthew G. Knepley 4903*997bf629SMatthew G. Knepley .seealso: `DMPlexComputeBdResidualSingle()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey` 4904*997bf629SMatthew G. Knepley @*/ 4905*997bf629SMatthew G. Knepley PetscErrorCode DMPlexComputeBdResidualSingleByKey(DM dm, PetscWeakForm wf, PetscFormKey key, IS facetIS, Vec locX, Vec locX_t, PetscReal t, DMField coordField, Vec locF) 4906d71ae5a4SJacob Faibussowitsch { 49073e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 49083e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL; 4909673019faSMatthew G. Knepley const char *name = "BdResidual"; 49103e9753d6SMatthew G. Knepley DMEnclosureType encAux; 49113e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 49123e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 49133e9753d6SMatthew G. Knepley Vec locA = NULL; 49143e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL; 49153e9753d6SMatthew G. Knepley PetscInt totDim, totDimAux = 0; 49163e9753d6SMatthew G. Knepley 49173e9753d6SMatthew G. Knepley PetscFunctionBegin; 49189566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 49199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 49209566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 49219566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 49229566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 49233e9753d6SMatthew G. Knepley if (locA) { 49243e9753d6SMatthew G. Knepley DM dmAux; 49253e9753d6SMatthew G. Knepley 49269566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 49279566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 49289566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 49299566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 49309566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 49319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 49323e9753d6SMatthew G. Knepley } 49330c290148SMatthew G. Knepley { 49343e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 49353e9753d6SMatthew G. Knepley PetscInt maxDegree; 49363e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 49373e9753d6SMatthew G. Knepley IS pointIS; 49383e9753d6SMatthew G. Knepley const PetscInt *points; 49393e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 49403e9753d6SMatthew G. Knepley 49419566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 49420c290148SMatthew G. Knepley if (!pointIS) goto end; /* No points with that id on this process */ 49433e9753d6SMatthew G. Knepley { 49443e9753d6SMatthew G. Knepley IS isectIS; 49453e9753d6SMatthew G. Knepley 49463e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 49479566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 49489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 49493e9753d6SMatthew G. Knepley pointIS = isectIS; 49503e9753d6SMatthew G. Knepley } 49519566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 49529566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 495332603206SJames Wright PetscCall(PetscMalloc4(numFaces * totDim, &u, (locX_t ? (size_t)numFaces * totDim : 0), &u_t, numFaces * totDim, &elemVec, (locA ? (size_t)numFaces * totDimAux : 0), &a)); 49549566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 495548a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 49563e9753d6SMatthew G. Knepley if (!qGeom) { 49573e9753d6SMatthew G. Knepley PetscFE fe; 49583e9753d6SMatthew G. Knepley 49599566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 49609566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 49619566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 49623e9753d6SMatthew G. Knepley } 49639566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 4964ac9d17c7SMatthew G. Knepley PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_FEGEOM_BOUNDARY, &fgeom)); 49653e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 4966f15274beSMatthew Knepley const PetscInt point = points[face], *support; 49673e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 4968f15274beSMatthew Knepley PetscInt i; 49693e9753d6SMatthew G. Knepley 49709566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 49719566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 49723e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 49739566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 49743e9753d6SMatthew G. Knepley if (locX_t) { 49759566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 49763e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 49779566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 49783e9753d6SMatthew G. Knepley } 49793e9753d6SMatthew G. Knepley if (locA) { 49803e9753d6SMatthew G. Knepley PetscInt subp; 49813e9753d6SMatthew G. Knepley 49829566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 49839566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 49843e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 49859566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 49863e9753d6SMatthew G. Knepley } 49873e9753d6SMatthew G. Knepley } 49889566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numFaces * totDim)); 49893e9753d6SMatthew G. Knepley { 49903e9753d6SMatthew G. Knepley PetscFE fe; 49913e9753d6SMatthew G. Knepley PetscInt Nb; 49923e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 49933e9753d6SMatthew G. Knepley /* Conforming batches */ 49943e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 49953e9753d6SMatthew G. Knepley /* Remainder */ 49963e9753d6SMatthew G. Knepley PetscInt Nr, offset; 49973e9753d6SMatthew G. Knepley 49989566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 49999566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 50009566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 50013e9753d6SMatthew G. Knepley /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */ 50023e9753d6SMatthew G. Knepley blockSize = Nb; 50033e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 50049566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 50053e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 50063e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 50073e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 50083e9753d6SMatthew G. Knepley offset = numFaces - Nr; 50099566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 50109566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 50119566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 50129566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 50138e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim])); 50149566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 50153e9753d6SMatthew G. Knepley } 50163e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 50173e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 50183e9753d6SMatthew G. Knepley 5019673019faSMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, name, totDim, &elemVec[face * totDim])); 50209566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 50219566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES)); 50223e9753d6SMatthew G. Knepley } 50239566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 50249566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 50259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 50269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 50279566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemVec, a)); 50283e9753d6SMatthew G. Knepley } 50290c290148SMatthew G. Knepley end: 5030673019faSMatthew G. Knepley if (mesh->printFEM) { 5031673019faSMatthew G. Knepley PetscSection s; 5032673019faSMatthew G. Knepley Vec locFbc; 5033673019faSMatthew G. Knepley PetscInt pStart, pEnd, maxDof; 5034673019faSMatthew G. Knepley PetscScalar *zeroes; 5035673019faSMatthew G. Knepley 5036673019faSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 5037673019faSMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 5038673019faSMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 5039673019faSMatthew G. Knepley PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 5040673019faSMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(s, &maxDof)); 5041673019faSMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 5042673019faSMatthew G. Knepley for (PetscInt p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, s, p, zeroes, INSERT_BC_VALUES)); 5043673019faSMatthew G. Knepley PetscCall(PetscFree(zeroes)); 5044673019faSMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 5045673019faSMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 5046673019faSMatthew G. Knepley } 50479566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 50489566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 50493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50503e9753d6SMatthew G. Knepley } 50513e9753d6SMatthew G. Knepley 5052*997bf629SMatthew G. Knepley /*@ 5053*997bf629SMatthew G. Knepley DMPlexComputeBdResidualSingle - Compute the local boundary residual 5054*997bf629SMatthew G. Knepley 5055*997bf629SMatthew G. Knepley Not collective 5056*997bf629SMatthew G. Knepley 5057*997bf629SMatthew G. Knepley Input Parameters: 5058*997bf629SMatthew G. Knepley + dm - The output `DM` 5059*997bf629SMatthew G. Knepley . wf - The `PetscWeakForm` holding forms on this boundary 5060*997bf629SMatthew G. Knepley . key - The `PetscFormKey` indicating what should be integrated 5061*997bf629SMatthew G. Knepley . locX - The local solution 5062*997bf629SMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems 5063*997bf629SMatthew G. Knepley - t - The time 5064*997bf629SMatthew G. Knepley 5065*997bf629SMatthew G. Knepley Output Parameter: 5066*997bf629SMatthew G. Knepley . locF - The local residual 5067*997bf629SMatthew G. Knepley 5068*997bf629SMatthew G. Knepley Level: developer 5069*997bf629SMatthew G. Knepley 5070*997bf629SMatthew G. Knepley .seealso: `DMPlexComputeBdResidualSingleByKey()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey` 5071*997bf629SMatthew G. Knepley @*/ 5072*997bf629SMatthew G. Knepley PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, PetscReal t, Vec locF) 5073d71ae5a4SJacob Faibussowitsch { 50743e9753d6SMatthew G. Knepley DMField coordField; 50753e9753d6SMatthew G. Knepley DMLabel depthLabel; 50763e9753d6SMatthew G. Knepley IS facetIS; 50773e9753d6SMatthew G. Knepley PetscInt dim; 50783e9753d6SMatthew G. Knepley 50793e9753d6SMatthew G. Knepley PetscFunctionBegin; 50809566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 50819566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 50829566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 50839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 5084*997bf629SMatthew G. Knepley PetscCall(DMPlexComputeBdResidualSingleByKey(dm, wf, key, facetIS, locX, locX_t, t, coordField, locF)); 50859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 50863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50873e9753d6SMatthew G. Knepley } 50883e9753d6SMatthew G. Knepley 5089a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 5090d71ae5a4SJacob Faibussowitsch { 50913e9753d6SMatthew G. Knepley PetscDS prob; 50923e9753d6SMatthew G. Knepley PetscInt numBd, bd; 50933e9753d6SMatthew G. Knepley DMField coordField = NULL; 50943e9753d6SMatthew G. Knepley IS facetIS = NULL; 50953e9753d6SMatthew G. Knepley DMLabel depthLabel; 50963e9753d6SMatthew G. Knepley PetscInt dim; 50973e9753d6SMatthew G. Knepley 50983e9753d6SMatthew G. Knepley PetscFunctionBegin; 50999566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 51009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 51019566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 51029566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 51039566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 51043e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 510545480ffeSMatthew G. Knepley PetscWeakForm wf; 51063e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 51073e9753d6SMatthew G. Knepley DMLabel label; 51083e9753d6SMatthew G. Knepley const PetscInt *values; 51090c290148SMatthew G. Knepley PetscInt field, numValues, v; 51103e9753d6SMatthew G. Knepley PetscObject obj; 51113e9753d6SMatthew G. Knepley PetscClassId id; 51120c290148SMatthew G. Knepley PetscFormKey key; 51133e9753d6SMatthew G. Knepley 51149566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL)); 51153d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 51169566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 51179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 51183d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 51193e9753d6SMatthew G. Knepley if (!facetIS) { 51203e9753d6SMatthew G. Knepley DMLabel depthLabel; 51213e9753d6SMatthew G. Knepley PetscInt dim; 51223e9753d6SMatthew G. Knepley 51239566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 51249566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 51259566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 51263e9753d6SMatthew G. Knepley } 51279566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 51280c290148SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 51290c290148SMatthew G. Knepley key.label = label; 51300c290148SMatthew G. Knepley key.value = values[v]; 51310c290148SMatthew G. Knepley key.field = field; 51320c290148SMatthew G. Knepley key.part = 0; 5133*997bf629SMatthew G. Knepley PetscCall(DMPlexComputeBdResidualSingleByKey(dm, wf, key, facetIS, locX, locX_t, t, coordField, locF)); 51340c290148SMatthew G. Knepley } 51353e9753d6SMatthew G. Knepley } 51369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 51373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51383e9753d6SMatthew G. Knepley } 51393e9753d6SMatthew G. Knepley 5140754e4fbaSMatthew G. Knepley /*@ 5141754e4fbaSMatthew G. Knepley DMPlexComputeResidualByKey - Compute the local residual for terms matching the input key 5142754e4fbaSMatthew G. Knepley 5143754e4fbaSMatthew G. Knepley Collective 5144754e4fbaSMatthew G. Knepley 5145754e4fbaSMatthew G. Knepley Input Parameters: 5146754e4fbaSMatthew G. Knepley + dm - The output `DM` 5147754e4fbaSMatthew G. Knepley . key - The `PetscFormKey` indicating what should be integrated 5148754e4fbaSMatthew G. Knepley . cellIS - The `IS` giving a set of cells to integrate over 5149754e4fbaSMatthew G. Knepley . time - The time, or `PETSC_MIN_REAL` to include implicit terms in a time-independent problems 5150754e4fbaSMatthew G. Knepley . locX - The local solution 5151754e4fbaSMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems 5152754e4fbaSMatthew G. Knepley . t - The time 5153754e4fbaSMatthew G. Knepley - user - An optional user context, passed to the pointwise functions 5154754e4fbaSMatthew G. Knepley 5155754e4fbaSMatthew G. Knepley Output Parameter: 5156754e4fbaSMatthew G. Knepley . locF - The local residual 5157754e4fbaSMatthew G. Knepley 5158754e4fbaSMatthew G. Knepley Level: developer 5159754e4fbaSMatthew G. Knepley 5160754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey` 5161754e4fbaSMatthew G. Knepley @*/ 5162754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeResidualByKey(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 5163d71ae5a4SJacob Faibussowitsch { 51643e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 51653e9753d6SMatthew G. Knepley const char *name = "Residual"; 51663e9753d6SMatthew G. Knepley DM dmAux = NULL; 51673e9753d6SMatthew G. Knepley DM dmGrad = NULL; 51683e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 51696528b96dSMatthew G. Knepley PetscDS ds = NULL; 51706528b96dSMatthew G. Knepley PetscDS dsAux = NULL; 51713e9753d6SMatthew G. Knepley PetscSection section = NULL; 51723e9753d6SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 51733e9753d6SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 51743e9753d6SMatthew G. Knepley PetscBool isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 51753e9753d6SMatthew G. Knepley PetscFV fvm = NULL; 51763e9753d6SMatthew G. Knepley DMField coordField = NULL; 51775962854dSMatthew G. Knepley Vec locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 51783e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a, *uL, *uR; 51793e9753d6SMatthew G. Knepley IS chunkIS; 51803e9753d6SMatthew G. Knepley const PetscInt *cells; 51813e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 51823e9753d6SMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd; 51831690c2aeSBarry Smith PetscInt maxDegree = PETSC_INT_MAX; 51843e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 51853e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 51863e9753d6SMatthew G. Knepley 51873e9753d6SMatthew G. Knepley PetscFunctionBegin; 51889566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 51893cc88e6aSStefano Zampini if (!cellIS) goto end; 51903cc88e6aSStefano Zampini PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 51913cc88e6aSStefano Zampini if (cStart >= cEnd) goto end; 51923e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 51933e9753d6SMatthew G. Knepley /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */ 51943e9753d6SMatthew G. Knepley /* FEM+FVM */ 51959566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 51963e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 51979566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 51989566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 519907218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, NULL)); 52009566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 52019566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 52029566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 52033e9753d6SMatthew G. Knepley if (locA) { 52043e9753d6SMatthew G. Knepley PetscInt subcell; 52059566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 52061059d808SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell)); 520707218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux, subcell, &dsAux, NULL)); 52089566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 52093e9753d6SMatthew G. Knepley } 52103e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 52113e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 52123e9753d6SMatthew G. Knepley PetscObject obj; 52133e9753d6SMatthew G. Knepley PetscClassId id; 52143e9753d6SMatthew G. Knepley PetscBool fimp; 52153e9753d6SMatthew G. Knepley 52169566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 52173e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 52189566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 52199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5220ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 52219371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 52229371c9d4SSatish Balay useFVM = PETSC_TRUE; 52239371c9d4SSatish Balay fvm = (PetscFV)obj; 52249371c9d4SSatish Balay } 52253e9753d6SMatthew G. Knepley } 52263e9753d6SMatthew G. Knepley if (useFEM) { 52279566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 52289566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 52293e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 52309566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 5231ac9d17c7SMatthew G. Knepley if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FEGEOM_BASIC, &affineGeom)); 52323e9753d6SMatthew G. Knepley } else { 52339566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 52343e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 52353e9753d6SMatthew G. Knepley PetscObject obj; 52363e9753d6SMatthew G. Knepley PetscClassId id; 52373e9753d6SMatthew G. Knepley PetscBool fimp; 52383e9753d6SMatthew G. Knepley 52399566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 52403e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 52419566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 52429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 52433e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 52443e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 52453e9753d6SMatthew G. Knepley 52469566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 52479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 5248ac9d17c7SMatthew G. Knepley PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FEGEOM_BASIC, &geoms[f])); 52493e9753d6SMatthew G. Knepley } 52503e9753d6SMatthew G. Knepley } 52513e9753d6SMatthew G. Knepley } 52523e9753d6SMatthew G. Knepley } 52535962854dSMatthew G. Knepley // Handle non-essential (e.g. outflow) boundary values 52543e9753d6SMatthew G. Knepley if (useFVM) { 52555962854dSMatthew G. Knepley PetscCall(DMPlexInsertBoundaryValuesFVM(dm, fvm, locX, time, &locGrad)); 52569566063dSJacob Faibussowitsch PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 52579566063dSJacob Faibussowitsch PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad)); 52583e9753d6SMatthew G. Knepley } 52593e9753d6SMatthew G. Knepley /* Loop over chunks */ 52609566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 52613e9753d6SMatthew G. Knepley numCells = cEnd - cStart; 52623e9753d6SMatthew G. Knepley numChunks = 1; 52633e9753d6SMatthew G. Knepley cellChunkSize = numCells / numChunks; 52643e9753d6SMatthew G. Knepley faceChunkSize = (fEnd - fStart) / numChunks; 52653e9753d6SMatthew G. Knepley numChunks = PetscMin(1, numCells); 52663e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 52673e9753d6SMatthew G. Knepley PetscScalar *elemVec, *fluxL, *fluxR; 52683e9753d6SMatthew G. Knepley PetscReal *vol; 52693e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeom; 52703e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 52713e9753d6SMatthew G. Knepley PetscInt fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face; 52723e9753d6SMatthew G. Knepley 52733e9753d6SMatthew G. Knepley /* Extract field coefficients */ 52743e9753d6SMatthew G. Knepley if (useFEM) { 52759566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 52769566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 52779566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 52789566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 52793e9753d6SMatthew G. Knepley } 52803e9753d6SMatthew G. Knepley if (useFVM) { 52819566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 52829566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 52839566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 52849566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 52859566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxL, numFaces * totDim)); 52869566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxR, numFaces * totDim)); 52873e9753d6SMatthew G. Knepley } 52883e9753d6SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 52893e9753d6SMatthew G. Knepley /* Loop over fields */ 52903e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 52913e9753d6SMatthew G. Knepley PetscObject obj; 52923e9753d6SMatthew G. Knepley PetscClassId id; 52933e9753d6SMatthew G. Knepley PetscBool fimp; 52943e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 52953e9753d6SMatthew G. Knepley 52966528b96dSMatthew G. Knepley key.field = f; 52979566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 52983e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 52999566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 53009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 53013e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 53023e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 53033e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 53043e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 53053e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 53063e9753d6SMatthew G. Knepley PetscInt Nq, Nb; 53073e9753d6SMatthew G. Knepley 53089566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 53099566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 53109566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 53113e9753d6SMatthew G. Knepley blockSize = Nb; 53123e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 53139566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 53143e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 53153e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 53163e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 53173e9753d6SMatthew G. Knepley offset = numCells - Nr; 53183e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 53193e9753d6SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 53209566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 53219566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec)); 53229566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 53238e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, &elemVec[offset * totDim])); 53249566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 53253e9753d6SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 53263e9753d6SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 53273e9753d6SMatthew G. Knepley 53283e9753d6SMatthew G. Knepley Ne = numFaces; 53293e9753d6SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 53303e9753d6SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 53319566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 533263a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 53333e9753d6SMatthew G. Knepley } 53343e9753d6SMatthew G. Knepley /* Loop over domain */ 53353e9753d6SMatthew G. Knepley if (useFEM) { 53363e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 53373e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 53383e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 53393e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 53403e9753d6SMatthew G. Knepley 53419566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 53423e9753d6SMatthew G. Knepley if (ghostLabel) { 53433e9753d6SMatthew G. Knepley PetscInt ghostVal; 53443e9753d6SMatthew G. Knepley 53459566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 53463e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 53473e9753d6SMatthew G. Knepley } 53489566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 53493e9753d6SMatthew G. Knepley } 53503e9753d6SMatthew G. Knepley } 53513e9753d6SMatthew G. Knepley if (useFVM) { 53523e9753d6SMatthew G. Knepley PetscScalar *fa; 53533e9753d6SMatthew G. Knepley PetscInt iface; 53543e9753d6SMatthew G. Knepley 53559566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 53563e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 53573e9753d6SMatthew G. Knepley PetscFV fv; 53583e9753d6SMatthew G. Knepley PetscObject obj; 53593e9753d6SMatthew G. Knepley PetscClassId id; 53605962854dSMatthew G. Knepley PetscInt cdim, foff, pdim; 53613e9753d6SMatthew G. Knepley 53625962854dSMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 53639566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 53649566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(ds, f, &foff)); 53659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 53663e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 53673e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 53689566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 53693e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 53703e9753d6SMatthew G. Knepley for (face = fS, iface = 0; face < fE; ++face) { 53713e9753d6SMatthew G. Knepley const PetscInt *scells; 53723e9753d6SMatthew G. Knepley PetscScalar *fL = NULL, *fR = NULL; 53733e9753d6SMatthew G. Knepley PetscInt ghost, d, nsupp, nchild; 53743e9753d6SMatthew G. Knepley 53759566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 53769566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 53779566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 53783e9753d6SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 53799566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &scells)); 53809566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost)); 53819566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL)); 53829566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost)); 53839566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR)); 53845962854dSMatthew G. Knepley if (mesh->printFVM > 1) { 53855962854dSMatthew G. Knepley PetscCall(DMPrintCellVectorReal(face, "Residual: normal", cdim, fgeom[iface].normal)); 53865962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: left state", pdim, &uL[iface * totDim + foff])); 53875962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: right state", pdim, &uR[iface * totDim + foff])); 53885962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: left flux", pdim, &fluxL[iface * totDim + foff])); 53895962854dSMatthew G. Knepley PetscCall(DMPrintCellVector(face, "Residual: right flux", pdim, &fluxR[iface * totDim + foff])); 53905962854dSMatthew G. Knepley } 53913e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) { 53923e9753d6SMatthew G. Knepley if (fL) fL[d] -= fluxL[iface * totDim + foff + d]; 53933e9753d6SMatthew G. Knepley if (fR) fR[d] += fluxR[iface * totDim + foff + d]; 53943e9753d6SMatthew G. Knepley } 53953e9753d6SMatthew G. Knepley ++iface; 53963e9753d6SMatthew G. Knepley } 53973e9753d6SMatthew G. Knepley } 53989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 53993e9753d6SMatthew G. Knepley } 54003e9753d6SMatthew G. Knepley /* Handle time derivative */ 54013e9753d6SMatthew G. Knepley if (locX_t) { 54023e9753d6SMatthew G. Knepley PetscScalar *x_t, *fa; 54033e9753d6SMatthew G. Knepley 54049566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 54059566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 54063e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 54073e9753d6SMatthew G. Knepley PetscFV fv; 54083e9753d6SMatthew G. Knepley PetscObject obj; 54093e9753d6SMatthew G. Knepley PetscClassId id; 54103e9753d6SMatthew G. Knepley PetscInt pdim, d; 54113e9753d6SMatthew G. Knepley 54129566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 54139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 54143e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 54153e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 54169566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 54173e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 54183e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 54193e9753d6SMatthew G. Knepley PetscScalar *u_t, *r; 54203e9753d6SMatthew G. Knepley 54213e9753d6SMatthew G. Knepley if (ghostLabel) { 54223e9753d6SMatthew G. Knepley PetscInt ghostVal; 54233e9753d6SMatthew G. Knepley 54249566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 54253e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 54263e9753d6SMatthew G. Knepley } 54279566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 54289566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 54293e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 54303e9753d6SMatthew G. Knepley } 54313e9753d6SMatthew G. Knepley } 54329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 54339566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 54343e9753d6SMatthew G. Knepley } 54353e9753d6SMatthew G. Knepley if (useFEM) { 54369566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 54379566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 54383e9753d6SMatthew G. Knepley } 54393e9753d6SMatthew G. Knepley if (useFVM) { 54409566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 54419566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 54429566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 54439566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 54449566063dSJacob Faibussowitsch if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 54453e9753d6SMatthew G. Knepley } 54463e9753d6SMatthew G. Knepley } 54479566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 54489566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 54493e9753d6SMatthew G. Knepley 54503e9753d6SMatthew G. Knepley if (useFEM) { 54519566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user)); 54523e9753d6SMatthew G. Knepley 54533e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 54549566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 54559566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 54563e9753d6SMatthew G. Knepley } else { 54573e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 54589566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 54599566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 54603e9753d6SMatthew G. Knepley } 54619566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 54623e9753d6SMatthew G. Knepley } 54633e9753d6SMatthew G. Knepley } 54643e9753d6SMatthew G. Knepley 54653e9753d6SMatthew G. Knepley /* FEM */ 54663e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 54673e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 54683e9753d6SMatthew G. Knepley /* 3: Handle boundary values */ 54693e9753d6SMatthew G. Knepley /* 4: Loop over domain */ 54703e9753d6SMatthew G. Knepley /* Extract coefficients */ 54713e9753d6SMatthew G. Knepley /* Loop over fields */ 54723e9753d6SMatthew G. Knepley /* Set tiling for FE*/ 54733e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec */ 54743e9753d6SMatthew G. Knepley /* Loop over subdomain */ 54753e9753d6SMatthew G. Knepley /* Loop over quad points */ 54763e9753d6SMatthew G. Knepley /* Transform coords to real space */ 54773e9753d6SMatthew G. Knepley /* Evaluate field and aux fields at point */ 54783e9753d6SMatthew G. Knepley /* Evaluate residual at point */ 54793e9753d6SMatthew G. Knepley /* Transform residual to real space */ 54803e9753d6SMatthew G. Knepley /* Add residual to elemVec */ 54813e9753d6SMatthew G. Knepley /* Loop over domain */ 54823e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 54833e9753d6SMatthew G. Knepley 54843e9753d6SMatthew G. Knepley /* FVM */ 54853e9753d6SMatthew G. Knepley /* Get geometric data */ 54863e9753d6SMatthew G. Knepley /* If using gradients */ 54873e9753d6SMatthew G. Knepley /* Compute gradient data */ 54883e9753d6SMatthew G. Knepley /* Loop over domain faces */ 54893e9753d6SMatthew G. Knepley /* Count computational faces */ 54903e9753d6SMatthew G. Knepley /* Reconstruct cell gradient */ 54913e9753d6SMatthew G. Knepley /* Loop over domain cells */ 54923e9753d6SMatthew G. Knepley /* Limit cell gradients */ 54933e9753d6SMatthew G. Knepley /* Handle boundary values */ 54943e9753d6SMatthew G. Knepley /* Loop over domain faces */ 54953e9753d6SMatthew G. Knepley /* Read out field, centroid, normal, volume for each side of face */ 54963e9753d6SMatthew G. Knepley /* Riemann solve over faces */ 54973e9753d6SMatthew G. Knepley /* Loop over domain faces */ 54983e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 54993e9753d6SMatthew G. Knepley /* TODO Change printFEM to printDisc here */ 55003e9753d6SMatthew G. Knepley if (mesh->printFEM) { 55013e9753d6SMatthew G. Knepley Vec locFbc; 55023e9753d6SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 55033e9753d6SMatthew G. Knepley PetscScalar *zeroes; 55043e9753d6SMatthew G. Knepley 55059566063dSJacob Faibussowitsch PetscCall(VecDuplicate(locF, &locFbc)); 55069566063dSJacob Faibussowitsch PetscCall(VecCopy(locF, locFbc)); 55079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 55089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 55099566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(maxDof, &zeroes)); 551048a46eb9SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 55119566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroes)); 55129566063dSJacob Faibussowitsch PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 55139566063dSJacob Faibussowitsch PetscCall(VecDestroy(&locFbc)); 55143e9753d6SMatthew G. Knepley } 55153cc88e6aSStefano Zampini end: 55169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 55173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55183e9753d6SMatthew G. Knepley } 55193e9753d6SMatthew G. Knepley 5520754e4fbaSMatthew G. Knepley /*@ 5521754e4fbaSMatthew G. Knepley DMPlexComputeResidualHybridByKey - Compute the local residual over hybrid cells for terms matching the input key 55226528b96dSMatthew G. Knepley 5523754e4fbaSMatthew G. Knepley Collective 55246528b96dSMatthew G. Knepley 5525754e4fbaSMatthew G. Knepley Input Parameters: 5526754e4fbaSMatthew G. Knepley + dm - The output `DM` 5527754e4fbaSMatthew G. Knepley . key - The `PetscFormKey` array (left cell, right cell, cohesive cell) indicating what should be integrated 5528754e4fbaSMatthew G. Knepley . cellIS - The `IS` give a set of cells to integrate over 5529754e4fbaSMatthew G. Knepley . time - The time, or `PETSC_MIN_REAL` to include implicit terms in a time-independent problems 5530754e4fbaSMatthew G. Knepley . locX - The local solution 5531754e4fbaSMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems 5532754e4fbaSMatthew G. Knepley . t - The time 5533754e4fbaSMatthew G. Knepley - user - An optional user context, passed to the pointwise functions 55346528b96dSMatthew G. Knepley 5535754e4fbaSMatthew G. Knepley Output Parameter: 5536754e4fbaSMatthew G. Knepley . locF - The local residual 5537754e4fbaSMatthew G. Knepley 5538754e4fbaSMatthew G. Knepley Level: developer 5539754e4fbaSMatthew G. Knepley 5540754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeResidualByKey()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey` 5541754e4fbaSMatthew G. Knepley @*/ 5542754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeResidualHybridByKey(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 5543d71ae5a4SJacob Faibussowitsch { 55443e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 55453e9753d6SMatthew G. Knepley const char *name = "Hybrid Residual"; 554604c51a94SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 55473e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 55486528b96dSMatthew G. Knepley PetscDS ds = NULL; 554907218a29SMatthew G. Knepley PetscDS dsIn = NULL; 55506528b96dSMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 555104c51a94SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 555207218a29SMatthew G. Knepley DM dmScale[3] = {NULL, NULL, NULL}; 555307218a29SMatthew G. Knepley PetscDS dsScale[3] = {NULL, NULL, NULL}; 555407218a29SMatthew G. Knepley Vec locS[3] = {NULL, NULL, NULL}; 55553e9753d6SMatthew G. Knepley PetscSection section = NULL; 55563e9753d6SMatthew G. Knepley DMField coordField = NULL; 555707218a29SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 555807218a29SMatthew G. Knepley PetscScalar *s[3] = {NULL, NULL, NULL}; 5559b2ab40e6SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 556007218a29SMatthew G. Knepley PetscScalar *elemVecNeg, *elemVecPos, *elemVecCoh; 5561989fa639SBrad Aagaard IS chunkISF, chunkISN; 55623e9753d6SMatthew G. Knepley const PetscInt *cells; 5563989fa639SBrad Aagaard PetscInt *faces, *neighbors; 55643e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 55653e2b0218SMatthew G. Knepley PetscInt Nf, f, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk; 55661690c2aeSBarry Smith PetscInt maxDegree = PETSC_INT_MAX; 5567989fa639SBrad Aagaard PetscQuadrature affineQuadF = NULL, *quadsF = NULL; 5568989fa639SBrad Aagaard PetscFEGeom *affineGeomF = NULL, **geomsF = NULL; 5569989fa639SBrad Aagaard PetscQuadrature affineQuadN = NULL, *quadsN = NULL; 5570989fa639SBrad Aagaard PetscFEGeom *affineGeomN = NULL, **geomsN = NULL; 55713e9753d6SMatthew G. Knepley 55723e9753d6SMatthew G. Knepley PetscFunctionBegin; 55733cc88e6aSStefano Zampini PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 55743cc88e6aSStefano Zampini if (!cellIS) goto end; 5575437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5576437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 55773cc88e6aSStefano Zampini if (cStart >= cEnd) goto end; 55785fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 55795fedec97SMatthew G. Knepley const char *name; 55809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 558163a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 55825fedec97SMatthew G. Knepley } 55833e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 55843e9753d6SMatthew G. Knepley /* FEM */ 55853e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 5586b98a7184SJames Wright PetscCall(DMGetLocalSection(dm, §ion)); 55879566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 558807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 55899566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 55909566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 559107218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn)); 55929566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 559304c51a94SMatthew G. Knepley if (locA[2]) { 55941059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 55951059d808SMatthew G. Knepley 55969566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 559707218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL)); 55989566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 55996528b96dSMatthew G. Knepley { 56006528b96dSMatthew G. Knepley const PetscInt *cone; 56016528b96dSMatthew G. Knepley PetscInt c; 56026528b96dSMatthew G. Knepley 56031059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 56046528b96dSMatthew G. Knepley for (c = 0; c < 2; ++c) { 56056528b96dSMatthew G. Knepley const PetscInt *support; 56066528b96dSMatthew G. Knepley PetscInt ssize, s; 56076528b96dSMatthew G. Knepley 56089566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 56099566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 56101059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 56111059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 56121059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 56131059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 56149566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 5615c75bfeddSPierre Jolivet PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part); 56169566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 5617ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 561807218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL)); 56199566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 56206528b96dSMatthew G. Knepley } 56216528b96dSMatthew G. Knepley } 56223e9753d6SMatthew G. Knepley } 562307218a29SMatthew G. Knepley /* Handle mass matrix scaling 562407218a29SMatthew G. Knepley The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */ 562507218a29SMatthew G. Knepley PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2])); 562607218a29SMatthew G. Knepley if (locS[2]) { 56273e2b0218SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 562807218a29SMatthew G. Knepley PetscInt Nb, Nbs; 562907218a29SMatthew G. Knepley 563007218a29SMatthew G. Knepley PetscCall(VecGetDM(locS[2], &dmScale[2])); 56313e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[2], cellStart, &dsScale[2], NULL)); 56323e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2])); 563307218a29SMatthew G. Knepley // BRAD: This is not set correctly 563407218a29SMatthew G. Knepley key[2].field = 2; 563507218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb)); 563607218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs)); 563707218a29SMatthew G. Knepley PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs); 56383e2b0218SMatthew G. Knepley { 56393e2b0218SMatthew G. Knepley const PetscInt *cone; 56403e2b0218SMatthew G. Knepley PetscInt c; 56413e2b0218SMatthew G. Knepley 56423e2b0218SMatthew G. Knepley locS[1] = locS[0] = locS[2]; 56433e2b0218SMatthew G. Knepley dmScale[1] = dmScale[0] = dmScale[2]; 56443e2b0218SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 56453e2b0218SMatthew G. Knepley for (c = 0; c < 2; ++c) { 56463e2b0218SMatthew G. Knepley const PetscInt *support; 56473e2b0218SMatthew G. Knepley PetscInt ssize, s; 56483e2b0218SMatthew G. Knepley 56493e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 56503e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 56513e2b0218SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 56523e2b0218SMatthew G. Knepley if (support[0] == cellStart) s = 1; 56533e2b0218SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 56543e2b0218SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 56553e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL)); 56563e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c])); 56573e2b0218SMatthew G. Knepley } 56583e2b0218SMatthew G. Knepley } 565907218a29SMatthew G. Knepley } 56603e9753d6SMatthew G. Knepley /* 2: Setup geometric data */ 56619566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 56629566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 56633e9753d6SMatthew G. Knepley if (maxDegree > 1) { 5664989fa639SBrad Aagaard PetscCall(PetscCalloc4(Nf, &quadsF, Nf, &geomsF, Nf, &quadsN, Nf, &geomsN)); 56653e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 56663e9753d6SMatthew G. Knepley PetscFE fe; 5667989fa639SBrad Aagaard PetscBool isCohesiveField; 56683e9753d6SMatthew G. Knepley 56699566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 56703e9753d6SMatthew G. Knepley if (fe) { 5671989fa639SBrad Aagaard PetscCall(PetscFEGetQuadrature(fe, &quadsF[f])); 5672989fa639SBrad Aagaard PetscCall(PetscObjectReference((PetscObject)quadsF[f])); 5673989fa639SBrad Aagaard } 5674989fa639SBrad Aagaard PetscCall(PetscDSGetDiscretization(dsIn, f, (PetscObject *)&fe)); 5675989fa639SBrad Aagaard PetscCall(PetscDSGetCohesive(dsIn, f, &isCohesiveField)); 5676989fa639SBrad Aagaard if (fe) { 5677989fa639SBrad Aagaard if (isCohesiveField) { 5678989fa639SBrad Aagaard for (PetscInt g = 0; g < Nf; ++g) { 5679989fa639SBrad Aagaard PetscCall(PetscDSGetDiscretization(dsIn, g, (PetscObject *)&fe)); 5680989fa639SBrad Aagaard PetscCall(PetscDSGetCohesive(dsIn, g, &isCohesiveField)); 5681989fa639SBrad Aagaard if (!isCohesiveField) break; 5682989fa639SBrad Aagaard } 5683989fa639SBrad Aagaard } 5684989fa639SBrad Aagaard PetscCall(PetscFEGetQuadrature(fe, &quadsN[f])); 5685989fa639SBrad Aagaard PetscCall(PetscObjectReference((PetscObject)quadsN[f])); 56863e9753d6SMatthew G. Knepley } 56873e9753d6SMatthew G. Knepley } 56883e9753d6SMatthew G. Knepley } 56893e9753d6SMatthew G. Knepley /* Loop over chunks */ 56903e9753d6SMatthew G. Knepley cellChunkSize = numCells; 56913e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 5692989fa639SBrad Aagaard PetscCall(PetscCalloc2(2 * cellChunkSize, &faces, 2 * cellChunkSize, &neighbors)); 5693989fa639SBrad Aagaard PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkISF)); 5694989fa639SBrad Aagaard PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, neighbors, PETSC_USE_POINTER, &chunkISN)); 56953e9753d6SMatthew G. Knepley /* Extract field coefficients */ 56963e9753d6SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 569707218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 569807218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 56993e2b0218SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 570007218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecNeg)); 570107218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecPos)); 570207218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVecCoh)); 57033e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 57043e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 57053e9753d6SMatthew G. Knepley 570607218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecNeg, cellChunkSize * totDim)); 570707218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecPos, cellChunkSize * totDim)); 570807218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemVecCoh, cellChunkSize * totDim)); 5709989fa639SBrad Aagaard /* Get faces and neighbors */ 57103e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 57113e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 5712989fa639SBrad Aagaard const PetscInt *cone, *support; 57139566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 571407218a29SMatthew G. Knepley faces[(c - cS) * 2 + 0] = cone[0]; 571507218a29SMatthew G. Knepley faces[(c - cS) * 2 + 1] = cone[1]; 5716989fa639SBrad Aagaard PetscCall(DMPlexGetSupport(dm, cone[0], &support)); 5717989fa639SBrad Aagaard neighbors[(c - cS) * 2 + 0] = support[0] == cell ? support[1] : support[0]; 5718989fa639SBrad Aagaard PetscCall(DMPlexGetSupport(dm, cone[1], &support)); 5719989fa639SBrad Aagaard neighbors[(c - cS) * 2 + 1] = support[0] == cell ? support[1] : support[0]; 57203e9753d6SMatthew G. Knepley } 5721989fa639SBrad Aagaard PetscCall(ISGeneralSetIndices(chunkISF, 2 * cellChunkSize, faces, PETSC_USE_POINTER)); 5722989fa639SBrad Aagaard PetscCall(ISGeneralSetIndices(chunkISN, 2 * cellChunkSize, neighbors, PETSC_USE_POINTER)); 57233e9753d6SMatthew G. Knepley /* Get geometric data */ 57243e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 5725989fa639SBrad Aagaard if (!affineQuadF) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkISF, &affineQuadF)); 5726989fa639SBrad Aagaard if (affineQuadF) PetscCall(DMSNESGetFEGeom(coordField, chunkISF, affineQuadF, PETSC_FEGEOM_COHESIVE, &affineGeomF)); 5727989fa639SBrad Aagaard if (!affineQuadN) { 5728989fa639SBrad Aagaard PetscInt dim; 5729989fa639SBrad Aagaard PetscCall(PetscQuadratureGetData(affineQuadF, &dim, NULL, NULL, NULL, NULL)); 5730989fa639SBrad Aagaard PetscCall(DMFieldCreateDefaultFaceQuadrature(coordField, chunkISN, &affineQuadN)); 5731989fa639SBrad Aagaard PetscCall(PetscQuadratureSetData(affineQuadN, dim + 1, PETSC_DECIDE, PETSC_DECIDE, NULL, NULL)); 5732989fa639SBrad Aagaard } 5733989fa639SBrad Aagaard if (affineQuadN) PetscCall(DMSNESGetFEGeom(coordField, chunkISN, affineQuadN, PETSC_FEGEOM_BASIC, &affineGeomN)); 57343e9753d6SMatthew G. Knepley } else { 57353e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5736989fa639SBrad Aagaard if (quadsF[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkISF, quadsF[f], PETSC_FEGEOM_COHESIVE, &geomsF[f])); 5737989fa639SBrad Aagaard if (quadsN[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkISN, quadsN[f], PETSC_FEGEOM_BASIC, &geomsN[f])); 57383e9753d6SMatthew G. Knepley } 57393e9753d6SMatthew G. Knepley } 57403e9753d6SMatthew G. Knepley /* Loop over fields */ 57413e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 57423e9753d6SMatthew G. Knepley PetscFE fe; 5743989fa639SBrad Aagaard PetscFEGeom *geomF = affineGeomF ? affineGeomF : geomsF[f]; 5744989fa639SBrad Aagaard PetscFEGeom *chunkGeomF = NULL, *remGeomF = NULL; 5745989fa639SBrad Aagaard PetscFEGeom *geomN = affineGeomN ? affineGeomN : geomsN[f]; 5746989fa639SBrad Aagaard PetscFEGeom *chunkGeomN = NULL, *remGeomN = NULL; 5747989fa639SBrad Aagaard PetscQuadrature quadF = affineQuadF ? affineQuadF : quadsF[f]; 57483e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 57495fedec97SMatthew G. Knepley PetscBool isCohesiveField; 57503e9753d6SMatthew G. Knepley 57519566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 57523e9753d6SMatthew G. Knepley if (!fe) continue; 57539566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 5754989fa639SBrad Aagaard PetscCall(PetscQuadratureGetData(quadF, NULL, NULL, &Nq, NULL, NULL)); 57559566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 57563e9753d6SMatthew G. Knepley blockSize = Nb; 57573e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 57589566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 57593e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 57603e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 57613e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 57623e9753d6SMatthew G. Knepley offset = numCells - Nr; 5763989fa639SBrad Aagaard PetscCall(PetscFEGeomGetChunk(geomF, 0, offset * 2, &chunkGeomF)); 5764989fa639SBrad Aagaard PetscCall(PetscFEGeomGetChunk(geomF, offset * 2, numCells * 2, &remGeomF)); 5765989fa639SBrad Aagaard PetscCall(PetscFEGeomGetChunk(geomN, 0, offset * 2, &chunkGeomN)); 5766989fa639SBrad Aagaard PetscCall(PetscFEGeomGetChunk(geomN, offset * 2, numCells * 2, &remGeomN)); 57679566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 5768989fa639SBrad Aagaard // TODO Do I need to set isCohesive on the chunks? 57696528b96dSMatthew G. Knepley key[0].field = f; 57706528b96dSMatthew G. Knepley key[1].field = f; 57715fedec97SMatthew G. Knepley key[2].field = f; 5772989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[0], a[0], t, elemVecNeg)); 5773989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[0], 0, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, &elemVecNeg[offset * totDim])); 5774989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[1], a[1], t, elemVecPos)); 5775989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[1], 1, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, &elemVecPos[offset * totDim])); 5776989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[2], a[2], t, elemVecCoh)); 5777989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridResidual(ds, dsIn, key[2], 2, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, &elemVecCoh[offset * totDim])); 5778989fa639SBrad Aagaard PetscCall(PetscFEGeomRestoreChunk(geomF, offset, numCells, &remGeomF)); 5779989fa639SBrad Aagaard PetscCall(PetscFEGeomRestoreChunk(geomF, 0, offset, &chunkGeomF)); 5780989fa639SBrad Aagaard PetscCall(PetscFEGeomRestoreChunk(geomN, offset, numCells, &remGeomN)); 5781989fa639SBrad Aagaard PetscCall(PetscFEGeomRestoreChunk(geomN, 0, offset, &chunkGeomN)); 57823e9753d6SMatthew G. Knepley } 57833e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 57843e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 57853e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 57863e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 578707218a29SMatthew G. Knepley PetscInt i; 57883e9753d6SMatthew G. Knepley 578907218a29SMatthew G. Knepley /* Scale element values */ 579007218a29SMatthew G. Knepley if (locS[0]) { 57913e2b0218SMatthew G. Knepley PetscInt Nb, off = cind * totDim, soff = cind * totDimScale[0]; 579207218a29SMatthew G. Knepley PetscBool cohesive; 579307218a29SMatthew G. Knepley 579407218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 579507218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, f, &Nb)); 579607218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 579707218a29SMatthew G. Knepley if (f == key[2].field) { 579807218a29SMatthew G. Knepley PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields"); 579907218a29SMatthew G. Knepley // No cohesive scaling field is currently input 580007218a29SMatthew G. Knepley for (i = 0; i < Nb; ++i) elemVecCoh[off + i] += s[0][soff + i] * elemVecNeg[off + i] + s[1][soff + i] * elemVecPos[off + i]; 580107218a29SMatthew G. Knepley off += Nb; 580207218a29SMatthew G. Knepley } else { 580307218a29SMatthew G. Knepley const PetscInt N = cohesive ? Nb : Nb * 2; 580407218a29SMatthew G. Knepley 580507218a29SMatthew G. Knepley for (i = 0; i < N; ++i) elemVecCoh[off + i] += elemVecNeg[off + i] + elemVecPos[off + i]; 580607218a29SMatthew G. Knepley off += N; 580707218a29SMatthew G. Knepley } 580807218a29SMatthew G. Knepley } 580907218a29SMatthew G. Knepley } else { 581007218a29SMatthew G. Knepley for (i = cind * totDim; i < (cind + 1) * totDim; ++i) elemVecCoh[i] += elemVecNeg[i] + elemVecPos[i]; 581107218a29SMatthew G. Knepley } 581207218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVecCoh[cind * totDim])); 58133e9753d6SMatthew G. Knepley if (ghostLabel) { 58143e9753d6SMatthew G. Knepley PetscInt ghostVal; 58153e9753d6SMatthew G. Knepley 58169566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 58173e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 58183e9753d6SMatthew G. Knepley } 581907218a29SMatthew G. Knepley PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVecCoh[cind * totDim], ADD_ALL_VALUES)); 58203e9753d6SMatthew G. Knepley } 58213e9753d6SMatthew G. Knepley } 58229566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 582307218a29SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 58243e2b0218SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 582507218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecNeg)); 582607218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecPos)); 582707218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVecCoh)); 5828989fa639SBrad Aagaard PetscCall(PetscFree2(faces, neighbors)); 5829989fa639SBrad Aagaard PetscCall(ISDestroy(&chunkISF)); 5830989fa639SBrad Aagaard PetscCall(ISDestroy(&chunkISN)); 58319566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 58323e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 5833989fa639SBrad Aagaard PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuadF, PETSC_FALSE, &affineGeomF)); 5834989fa639SBrad Aagaard PetscCall(PetscQuadratureDestroy(&affineQuadF)); 5835989fa639SBrad Aagaard PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuadN, PETSC_FALSE, &affineGeomN)); 5836989fa639SBrad Aagaard PetscCall(PetscQuadratureDestroy(&affineQuadN)); 58373e9753d6SMatthew G. Knepley } else { 58383e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5839989fa639SBrad Aagaard if (geomsF) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quadsF[f], PETSC_FALSE, &geomsF[f])); 5840989fa639SBrad Aagaard if (quadsF) PetscCall(PetscQuadratureDestroy(&quadsF[f])); 5841989fa639SBrad Aagaard if (geomsN) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quadsN[f], PETSC_FALSE, &geomsN[f])); 5842989fa639SBrad Aagaard if (quadsN) PetscCall(PetscQuadratureDestroy(&quadsN[f])); 58433e9753d6SMatthew G. Knepley } 5844989fa639SBrad Aagaard PetscCall(PetscFree4(quadsF, geomsF, quadsN, geomsN)); 58453e9753d6SMatthew G. Knepley } 584685cc2951SMatthew G. Knepley if (mesh->printFEM) { 584785cc2951SMatthew G. Knepley Vec locFbc; 584885cc2951SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 584985cc2951SMatthew G. Knepley PetscScalar *zeroes; 585085cc2951SMatthew G. Knepley 585185cc2951SMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 585285cc2951SMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 585385cc2951SMatthew G. Knepley PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 585485cc2951SMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 585585cc2951SMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 585685cc2951SMatthew G. Knepley for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 585785cc2951SMatthew G. Knepley PetscCall(PetscFree(zeroes)); 585885cc2951SMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 585985cc2951SMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 586085cc2951SMatthew G. Knepley } 58613cc88e6aSStefano Zampini end: 58629566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 58633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58643e9753d6SMatthew G. Knepley } 58653e9753d6SMatthew G. Knepley 5866*997bf629SMatthew G. Knepley /*@ 5867*997bf629SMatthew G. Knepley DMPlexComputeBdJacobianSingleByLabel - Compute the local boundary Jacobian for terms matching the input label 5868*997bf629SMatthew G. Knepley 5869*997bf629SMatthew G. Knepley Not collective 5870*997bf629SMatthew G. Knepley 5871*997bf629SMatthew G. Knepley Input Parameters: 5872*997bf629SMatthew G. Knepley + dm - The output `DM` 5873*997bf629SMatthew G. Knepley . wf - The `PetscWeakForm` holding forms on this boundary 5874*997bf629SMatthew G. Knepley . label - The `DMLabel` indicating what faces should be integrated over 5875*997bf629SMatthew G. Knepley . numValues - The number of label values 5876*997bf629SMatthew G. Knepley . values - The array of label values 5877*997bf629SMatthew G. Knepley . fieldI - The test field for these integrals 5878*997bf629SMatthew G. Knepley . facetIS - The `IS` giving the set of possible faces to integrate over (intersected with the label) 5879*997bf629SMatthew G. Knepley . locX - The local solution 5880*997bf629SMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems 5881*997bf629SMatthew G. Knepley . t - The time 5882*997bf629SMatthew G. Knepley . coordField - The `DMField` object with coordinates for these faces 5883*997bf629SMatthew G. Knepley - X_tShift - The multiplier for dF/dxdot 5884*997bf629SMatthew G. Knepley 5885*997bf629SMatthew G. Knepley Output Parameters: 5886*997bf629SMatthew G. Knepley + Jac - The local Jacobian 5887*997bf629SMatthew G. Knepley - JacP - The local Jacobian preconditioner 5888*997bf629SMatthew G. Knepley 5889*997bf629SMatthew G. Knepley Level: developer 5890*997bf629SMatthew G. Knepley 5891*997bf629SMatthew G. Knepley .seealso: `DMPlexComputeBdJacobianSingle()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey` 5892*997bf629SMatthew G. Knepley @*/ 5893*997bf629SMatthew G. Knepley PetscErrorCode DMPlexComputeBdJacobianSingleByLabel(DM dm, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, IS facetIS, Vec locX, Vec locX_t, PetscReal t, DMField coordField, PetscReal X_tShift, Mat Jac, Mat JacP) 5894d71ae5a4SJacob Faibussowitsch { 58953e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 58963e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL, tdm; 58973e9753d6SMatthew G. Knepley DMEnclosureType encAux; 5898be62b2b4SMatthew G. Knepley PetscDS ds, dsAux = NULL; 58993e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 5900e432b41dSStefano Zampini PetscSection globalSection; 59013e9753d6SMatthew G. Knepley Vec locA = NULL, tv; 5902be62b2b4SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL; 59033e9753d6SMatthew G. Knepley PetscInt v; 59043e9753d6SMatthew G. Knepley PetscInt Nf, totDim, totDimAux = 0; 5905be62b2b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, transform; 59063e9753d6SMatthew G. Knepley 59073e9753d6SMatthew G. Knepley PetscFunctionBegin; 59089566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 59099566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 59109566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 59119566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 5912be62b2b4SMatthew G. Knepley PetscCall(DMGetDS(dm, &ds)); 5913be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetNumFields(ds, &Nf)); 5914be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 591521a4fad8SMatthew G. Knepley PetscCall(PetscWeakFormHasBdJacobian(wf, &hasJac)); 591621a4fad8SMatthew G. Knepley PetscCall(PetscWeakFormHasBdJacobianPreconditioner(wf, &hasPrec)); 591721a4fad8SMatthew G. Knepley if (!hasJac && !hasPrec) PetscFunctionReturn(PETSC_SUCCESS); 591821a4fad8SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 59199566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA)); 59203e9753d6SMatthew G. Knepley if (locA) { 59213e9753d6SMatthew G. Knepley DM dmAux; 59223e9753d6SMatthew G. Knepley 59239566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 59249566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 59259566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 5926be62b2b4SMatthew G. Knepley PetscCall(DMGetDS(plexA, &dsAux)); 5927be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 59289566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 59293e9753d6SMatthew G. Knepley } 59303e9753d6SMatthew G. Knepley 59319566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 59323e9753d6SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 59333e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 59343e9753d6SMatthew G. Knepley PetscInt maxDegree; 59353e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 59363e9753d6SMatthew G. Knepley IS pointIS; 59373e9753d6SMatthew G. Knepley const PetscInt *points; 593806ad1575SMatthew G. Knepley PetscFormKey key; 59393e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 59403e9753d6SMatthew G. Knepley 594145480ffeSMatthew G. Knepley key.label = label; 594245480ffeSMatthew G. Knepley key.value = values[v]; 594306ad1575SMatthew G. Knepley key.part = 0; 59449566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 59453e9753d6SMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 59463e9753d6SMatthew G. Knepley { 59473e9753d6SMatthew G. Knepley IS isectIS; 59483e9753d6SMatthew G. Knepley 59493e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */ 59509566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 59519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 59523e9753d6SMatthew G. Knepley pointIS = isectIS; 59533e9753d6SMatthew G. Knepley } 59549566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 59559566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 595632603206SJames Wright PetscCall(PetscMalloc5(numFaces * totDim, &u, (locX_t ? (size_t)numFaces * totDim : 0), &u_t, (hasJac ? (size_t)numFaces * totDim * totDim : 0), &elemMat, (hasPrec ? (size_t)numFaces * totDim * totDim : 0), &elemMatP, (locA ? (size_t)numFaces * totDimAux : 0), &a)); 59579566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 595848a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 59593e9753d6SMatthew G. Knepley if (!qGeom) { 59603e9753d6SMatthew G. Knepley PetscFE fe; 59613e9753d6SMatthew G. Knepley 5962be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe)); 59639566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 59649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 59653e9753d6SMatthew G. Knepley } 59669566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 5967ac9d17c7SMatthew G. Knepley PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_FEGEOM_BOUNDARY, &fgeom)); 59683e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 5969f15274beSMatthew Knepley const PetscInt point = points[face], *support; 59703e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 5971f15274beSMatthew Knepley PetscInt i; 59723e9753d6SMatthew G. Knepley 59739566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 59749566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 59753e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 59769566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 59773e9753d6SMatthew G. Knepley if (locX_t) { 59789566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 59793e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 59809566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 59813e9753d6SMatthew G. Knepley } 59823e9753d6SMatthew G. Knepley if (locA) { 59833e9753d6SMatthew G. Knepley PetscInt subp; 59849566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 59859566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 59863e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 59879566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 59883e9753d6SMatthew G. Knepley } 59893e9753d6SMatthew G. Knepley } 599021a4fad8SMatthew G. Knepley if (elemMat) PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim)); 599121a4fad8SMatthew G. Knepley if (elemMatP) PetscCall(PetscArrayzero(elemMatP, numFaces * totDim * totDim)); 59923e9753d6SMatthew G. Knepley { 59933e9753d6SMatthew G. Knepley PetscFE fe; 59943e9753d6SMatthew G. Knepley PetscInt Nb; 59953e9753d6SMatthew G. Knepley /* Conforming batches */ 59963e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 59973e9753d6SMatthew G. Knepley /* Remainder */ 59983e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 59993e9753d6SMatthew G. Knepley PetscInt fieldJ, Nr, offset; 60003e9753d6SMatthew G. Knepley 6001be62b2b4SMatthew G. Knepley PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&fe)); 60029566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 60039566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 60043e9753d6SMatthew G. Knepley blockSize = Nb; 60053e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 60069566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 60073e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 60083e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 60093e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 60103e9753d6SMatthew G. Knepley offset = numFaces - Nr; 60119566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 60123e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 601345480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 6014be62b2b4SMatthew G. Knepley if (hasJac) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMat)); 6015be62b2b4SMatthew G. Knepley if (hasPrec) PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, dsAux, a, t, X_tShift, elemMatP)); 60163e9753d6SMatthew G. Knepley } 60179566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 60183e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 601945480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 6020be62b2b4SMatthew G. Knepley if (hasJac) 60218e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim])); 6022be62b2b4SMatthew G. Knepley if (hasPrec) 60238e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateBdJacobian(ds, wf, PETSCFE_JACOBIAN_PRE, key, Nr, chunkGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), dsAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim])); 60243e9753d6SMatthew G. Knepley } 60259566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 60263e9753d6SMatthew G. Knepley } 60273e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 60283e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 60293e9753d6SMatthew G. Knepley 60303e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 60319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 603221a4fad8SMatthew G. Knepley if (hasJac && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim])); 603321a4fad8SMatthew G. Knepley if (hasPrec && transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMatP[face * totDim * totDim])); 6034be62b2b4SMatthew G. Knepley if (hasPrec) { 6035be62b2b4SMatthew G. Knepley if (hasJac) { 60369566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim])); 603721a4fad8SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES)); 60383e9753d6SMatthew G. Knepley } 6039be62b2b4SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMatP[face * totDim * totDim])); 6040be62b2b4SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, support[0], &elemMatP[face * totDim * totDim], ADD_VALUES)); 6041be62b2b4SMatthew G. Knepley } else { 6042be62b2b4SMatthew G. Knepley if (hasJac) { 6043be62b2b4SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim])); 604421a4fad8SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, support[0], &elemMat[face * totDim * totDim], ADD_VALUES)); 6045be62b2b4SMatthew G. Knepley } 6046be62b2b4SMatthew G. Knepley } 6047be62b2b4SMatthew G. Knepley } 60489566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 60499566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 60509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 60519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 6052be62b2b4SMatthew G. Knepley PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, a)); 60533e9753d6SMatthew G. Knepley } 60549566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 60559566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 60563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60573e9753d6SMatthew G. Knepley } 60583e9753d6SMatthew G. Knepley 6059*997bf629SMatthew G. Knepley /*@ 6060*997bf629SMatthew G. Knepley DMPlexComputeBdJacobianSingle - Compute the local boundary Jacobian 6061*997bf629SMatthew G. Knepley 6062*997bf629SMatthew G. Knepley Not collective 6063*997bf629SMatthew G. Knepley 6064*997bf629SMatthew G. Knepley Input Parameters: 6065*997bf629SMatthew G. Knepley + dm - The output `DM` 6066*997bf629SMatthew G. Knepley . wf - The `PetscWeakForm` holding forms on this boundary 6067*997bf629SMatthew G. Knepley . label - The `DMLabel` indicating what faces should be integrated over 6068*997bf629SMatthew G. Knepley . numValues - The number of label values 6069*997bf629SMatthew G. Knepley . values - The array of label values 6070*997bf629SMatthew G. Knepley . fieldI - The test field for these integrals 6071*997bf629SMatthew G. Knepley . locX - The local solution 6072*997bf629SMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems 6073*997bf629SMatthew G. Knepley . t - The time 6074*997bf629SMatthew G. Knepley - X_tShift - The multiplier for dF/dxdot 6075*997bf629SMatthew G. Knepley 6076*997bf629SMatthew G. Knepley Output Parameters: 6077*997bf629SMatthew G. Knepley + Jac - The local Jacobian 6078*997bf629SMatthew G. Knepley - JacP - The local Jacobian preconditioner 6079*997bf629SMatthew G. Knepley 6080*997bf629SMatthew G. Knepley Level: developer 6081*997bf629SMatthew G. Knepley 6082*997bf629SMatthew G. Knepley .seealso: `DMPlexComputeBdJacobianSingleByLabel()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey` 6083*997bf629SMatthew G. Knepley @*/ 6084*997bf629SMatthew G. Knepley PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP) 6085d71ae5a4SJacob Faibussowitsch { 60863e9753d6SMatthew G. Knepley DMField coordField; 60873e9753d6SMatthew G. Knepley DMLabel depthLabel; 60883e9753d6SMatthew G. Knepley IS facetIS; 60893e9753d6SMatthew G. Knepley PetscInt dim; 60903e9753d6SMatthew G. Knepley 60913e9753d6SMatthew G. Knepley PetscFunctionBegin; 60929566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 60939566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 60949566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 60959566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 6096*997bf629SMatthew G. Knepley PetscCall(DMPlexComputeBdJacobianSingleByLabel(dm, wf, label, numValues, values, fieldI, facetIS, locX, locX_t, t, coordField, X_tShift, Jac, JacP)); 60979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 60983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60993e9753d6SMatthew G. Knepley } 61003e9753d6SMatthew G. Knepley 6101a4e35b19SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user) 6102d71ae5a4SJacob Faibussowitsch { 61033e9753d6SMatthew G. Knepley PetscDS prob; 61043e9753d6SMatthew G. Knepley PetscInt dim, numBd, bd; 61053e9753d6SMatthew G. Knepley DMLabel depthLabel; 61063e9753d6SMatthew G. Knepley DMField coordField = NULL; 61073e9753d6SMatthew G. Knepley IS facetIS; 61083e9753d6SMatthew G. Knepley 61093e9753d6SMatthew G. Knepley PetscFunctionBegin; 61109566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 61119566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 61129566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 61139566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 61149566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 61159566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 61163e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 611745480ffeSMatthew G. Knepley PetscWeakForm wf; 61183e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 61193e9753d6SMatthew G. Knepley DMLabel label; 61203e9753d6SMatthew G. Knepley const PetscInt *values; 61213e9753d6SMatthew G. Knepley PetscInt fieldI, numValues; 61223e9753d6SMatthew G. Knepley PetscObject obj; 61233e9753d6SMatthew G. Knepley PetscClassId id; 61243e9753d6SMatthew G. Knepley 61259566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL)); 61263d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 61279566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj)); 61289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 61293d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 6130*997bf629SMatthew G. Knepley PetscCall(DMPlexComputeBdJacobianSingleByLabel(dm, wf, label, numValues, values, fieldI, facetIS, locX, locX_t, t, coordField, X_tShift, Jac, JacP)); 61313e9753d6SMatthew G. Knepley } 61329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 61333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61343e9753d6SMatthew G. Knepley } 61353e9753d6SMatthew G. Knepley 6136754e4fbaSMatthew G. Knepley /*@ 6137754e4fbaSMatthew G. Knepley DMPlexComputeJacobianByKey - Compute the local Jacobian for terms matching the input key 6138754e4fbaSMatthew G. Knepley 6139754e4fbaSMatthew G. Knepley Collective 6140754e4fbaSMatthew G. Knepley 6141754e4fbaSMatthew G. Knepley Input Parameters: 6142754e4fbaSMatthew G. Knepley + dm - The output `DM` 6143754e4fbaSMatthew G. Knepley . key - The `PetscFormKey` indicating what should be integrated 6144754e4fbaSMatthew G. Knepley . cellIS - The `IS` give a set of cells to integrate over 6145754e4fbaSMatthew G. Knepley . t - The time 6146754e4fbaSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with respect to $X_t$ 6147754e4fbaSMatthew G. Knepley . locX - The local solution 6148754e4fbaSMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems 6149754e4fbaSMatthew G. Knepley - user - An optional user context, passed to the pointwise functions 6150754e4fbaSMatthew G. Knepley 6151754e4fbaSMatthew G. Knepley Output Parameters: 6152754e4fbaSMatthew G. Knepley + Jac - The local Jacobian 6153754e4fbaSMatthew G. Knepley - JacP - The local Jacobian preconditioner 6154754e4fbaSMatthew G. Knepley 6155754e4fbaSMatthew G. Knepley Level: developer 6156754e4fbaSMatthew G. Knepley 6157754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeResidualByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey` 6158754e4fbaSMatthew G. Knepley @*/ 6159754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobianByKey(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user) 6160d71ae5a4SJacob Faibussowitsch { 61613e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 61623e9753d6SMatthew G. Knepley const char *name = "Jacobian"; 61639a2a23afSMatthew G. Knepley DM dmAux = NULL, plex, tdm; 61643e9753d6SMatthew G. Knepley DMEnclosureType encAux; 61653e9753d6SMatthew G. Knepley Vec A, tv; 61663e9753d6SMatthew G. Knepley DMField coordField; 61673e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 6168e432b41dSStefano Zampini PetscSection section, globalSection, sectionAux; 61693e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL; 61703e9753d6SMatthew G. Knepley const PetscInt *cells; 61713e9753d6SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 617228351e22SJed Brown PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 6173e04ae0b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform; 61743e9753d6SMatthew G. Knepley 61753e9753d6SMatthew G. Knepley PetscFunctionBegin; 6176af18b51aSmarkadams4 PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 6177ae3cf2c1SStefano Zampini PetscCall(DMGetLocalSection(dm, §ion)); 6178ae3cf2c1SStefano Zampini PetscCall(DMGetGlobalSection(dm, &globalSection)); 6179ae3cf2c1SStefano Zampini PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 6180ae3cf2c1SStefano Zampini if (A) { 6181ae3cf2c1SStefano Zampini PetscCall(VecGetDM(A, &dmAux)); 6182ae3cf2c1SStefano Zampini PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 6183ae3cf2c1SStefano Zampini PetscCall(DMConvert(dmAux, DMPLEX, &plex)); 6184ae3cf2c1SStefano Zampini PetscCall(DMGetLocalSection(plex, §ionAux)); 6185ae3cf2c1SStefano Zampini PetscCall(DMGetDS(dmAux, &probAux)); 6186ae3cf2c1SStefano Zampini PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 6187ae3cf2c1SStefano Zampini } 6188ae3cf2c1SStefano Zampini PetscCall(DMGetCoordinateField(dm, &coordField)); 6189e04ae0b4SMatthew G. Knepley if (!cellIS) goto end; 61909566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 6191437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 6192437e83fbSMatthew G. Knepley if (cStart >= cEnd) goto end; 61939566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 61949566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 61959566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 619607218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 61979566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 61989566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 61999566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 62009566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 62013e9753d6SMatthew G. Knepley /* user passed in the same matrix, avoid double contributions and 62023e9753d6SMatthew G. Knepley only assemble the Jacobian */ 62033e9753d6SMatthew G. Knepley if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE; 62049566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 62053e9753d6SMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 6206754e4fbaSMatthew G. Knepley PetscCall(PetscMalloc5(numCells * totDim, &u, (locX_t ? (size_t)numCells * totDim : 0), &u_t, (hasJac ? (size_t)numCells * totDim * totDim : 0), &elemMat, (hasPrec ? (size_t)numCells * totDim * totDim : 0), &elemMatP, (hasDyn ? (size_t)numCells * totDim * totDim : 0), &elemMatD)); 62079566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 62083e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 62093e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 62103e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 62113e9753d6SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 62123e9753d6SMatthew G. Knepley PetscInt i; 62133e9753d6SMatthew G. Knepley 6214754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecGetClosure(dm, section, locX, cell, NULL, &x)); 62153e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 6216754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cell, NULL, &x)); 6217754e4fbaSMatthew G. Knepley if (locX_t) { 6218754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecGetClosure(dm, section, locX_t, cell, NULL, &x_t)); 62193e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 6220754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(dm, section, locX_t, cell, NULL, &x_t)); 62213e9753d6SMatthew G. Knepley } 62223e9753d6SMatthew G. Knepley if (dmAux) { 62233e9753d6SMatthew G. Knepley PetscInt subcell; 62249566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 62259566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x)); 62263e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 62279566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x)); 62283e9753d6SMatthew G. Knepley } 62293e9753d6SMatthew G. Knepley } 62309566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 62319566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim)); 62329566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 62333e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 62343e9753d6SMatthew G. Knepley PetscClassId id; 62353e9753d6SMatthew G. Knepley PetscFE fe; 62363e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 62373e9753d6SMatthew G. Knepley PetscInt Nb; 62383e9753d6SMatthew G. Knepley /* Conforming batches */ 62393e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 62403e9753d6SMatthew G. Knepley /* Remainder */ 62413e9753d6SMatthew G. Knepley PetscInt Nr, offset, Nq; 62423e9753d6SMatthew G. Knepley PetscInt maxDegree; 62433e9753d6SMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 62443e9753d6SMatthew G. Knepley 62459566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 62469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fe, &id)); 62479371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 62489371c9d4SSatish Balay hasFV = PETSC_TRUE; 62499371c9d4SSatish Balay continue; 62509371c9d4SSatish Balay } 62519566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 62529566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 62539566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 625448a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 62553e9753d6SMatthew G. Knepley if (!qGeom) { 62569566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 62579566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 62583e9753d6SMatthew G. Knepley } 62599566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 6260ac9d17c7SMatthew G. Knepley PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FEGEOM_BASIC, &cgeomFEM)); 62613e9753d6SMatthew G. Knepley blockSize = Nb; 62623e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 62639566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 62643e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 62653e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 62663e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 62673e9753d6SMatthew G. Knepley offset = numCells - Nr; 62689566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 62699566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 62703e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 62716528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 62723e9753d6SMatthew G. Knepley if (hasJac) { 62739566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 62748e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim])); 62753e9753d6SMatthew G. Knepley } 62763e9753d6SMatthew G. Knepley if (hasPrec) { 62779566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP)); 62788e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatP[offset * totDim * totDim])); 62793e9753d6SMatthew G. Knepley } 62803e9753d6SMatthew G. Knepley if (hasDyn) { 62819566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 62828e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMatD[offset * totDim * totDim])); 62833e9753d6SMatthew G. Knepley } 62843e9753d6SMatthew G. Knepley } 62859566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 62869566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 62879566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 62889566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 62893e9753d6SMatthew G. Knepley } 62903e9753d6SMatthew G. Knepley /* Add contribution from X_t */ 62919371c9d4SSatish Balay if (hasDyn) { 62929371c9d4SSatish Balay for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 62939371c9d4SSatish Balay } 62943e9753d6SMatthew G. Knepley if (hasFV) { 62953e9753d6SMatthew G. Knepley PetscClassId id; 62963e9753d6SMatthew G. Knepley PetscFV fv; 62973e9753d6SMatthew G. Knepley PetscInt offsetI, NcI, NbI = 1, fc, f; 62983e9753d6SMatthew G. Knepley 62993e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 63009566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 63019566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI)); 63029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fv, &id)); 63033e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 63042f86f8c5SMatthew G. Knepley /* Put in the weighted identity */ 63059566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcI)); 63063e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 63073e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 63083e9753d6SMatthew G. Knepley const PetscInt eOffset = cind * totDim * totDim; 63092f86f8c5SMatthew G. Knepley PetscReal vol; 63102f86f8c5SMatthew G. Knepley 63112f86f8c5SMatthew G. Knepley PetscCall(DMPlexComputeCellGeometryFVM(dm, c, &vol, NULL, NULL)); 63123e9753d6SMatthew G. Knepley for (fc = 0; fc < NcI; ++fc) { 63133e9753d6SMatthew G. Knepley for (f = 0; f < NbI; ++f) { 63143e9753d6SMatthew G. Knepley const PetscInt i = offsetI + f * NcI + fc; 63153e9753d6SMatthew G. Knepley if (hasPrec) { 63162f86f8c5SMatthew G. Knepley if (hasJac) elemMat[eOffset + i * totDim + i] = vol; 63172f86f8c5SMatthew G. Knepley elemMatP[eOffset + i * totDim + i] = vol; 63189371c9d4SSatish Balay } else { 63192f86f8c5SMatthew G. Knepley elemMat[eOffset + i * totDim + i] = vol; 63209371c9d4SSatish Balay } 63213e9753d6SMatthew G. Knepley } 63223e9753d6SMatthew G. Knepley } 63233e9753d6SMatthew G. Knepley } 63243e9753d6SMatthew G. Knepley } 63253e9753d6SMatthew G. Knepley /* No allocated space for FV stuff, so ignore the zero entries */ 63269566063dSJacob Faibussowitsch PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); 63273e9753d6SMatthew G. Knepley } 63283e9753d6SMatthew G. Knepley /* Insert values into matrix */ 63293e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 63303e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 63313e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 63323e9753d6SMatthew G. Knepley 63333e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 63349566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim])); 63353e9753d6SMatthew G. Knepley if (hasPrec) { 63363e9753d6SMatthew G. Knepley if (hasJac) { 63379566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 6338e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 63393e9753d6SMatthew G. Knepley } 63409566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim])); 6341be62b2b4SMatthew G. Knepley PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES)); 63423e9753d6SMatthew G. Knepley } else { 63433e9753d6SMatthew G. Knepley if (hasJac) { 63449566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 6345e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(dm, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 63463e9753d6SMatthew G. Knepley } 63473e9753d6SMatthew G. Knepley } 63483e9753d6SMatthew G. Knepley } 63499566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 63509566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 63519566063dSJacob Faibussowitsch PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD)); 6352d9302694SMatthew G. Knepley if (dmAux) PetscCall(PetscFree(a)); 63533e9753d6SMatthew G. Knepley /* Compute boundary integrals */ 6354754e4fbaSMatthew G. Knepley PetscCall(DMPlexComputeBdJacobian_Internal(dm, locX, locX_t, t, X_tShift, Jac, JacP, user)); 63553e9753d6SMatthew G. Knepley /* Assemble matrix */ 63569371c9d4SSatish Balay end: { 6357e04ae0b4SMatthew G. Knepley PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp; 6358e04ae0b4SMatthew G. Knepley 6359d9302694SMatthew G. Knepley if (dmAux) PetscCall(DMDestroy(&plex)); 6360462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 63613e9753d6SMatthew G. Knepley if (hasJac && hasPrec) { 63629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 63639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 63643e9753d6SMatthew G. Knepley } 6365e04ae0b4SMatthew G. Knepley } 63669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 63679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 63689566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 63693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 63703e9753d6SMatthew G. Knepley } 63713e9753d6SMatthew G. Knepley 6372754e4fbaSMatthew G. Knepley /*@ 6373754e4fbaSMatthew G. Knepley DMPlexComputeJacobianHybridByKey - Compute the local Jacobian over hybrid cells for terms matching the input key 6374754e4fbaSMatthew G. Knepley 6375754e4fbaSMatthew G. Knepley Collective 6376754e4fbaSMatthew G. Knepley 6377754e4fbaSMatthew G. Knepley Input Parameters: 6378754e4fbaSMatthew G. Knepley + dm - The output `DM` 6379754e4fbaSMatthew G. Knepley . key - The `PetscFormKey` array (left cell, right cell, cohesive cell) indicating what should be integrated 6380754e4fbaSMatthew G. Knepley . cellIS - The `IS` give a set of cells to integrate over 6381754e4fbaSMatthew G. Knepley . t - The time 6382754e4fbaSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with respect to $X_t$ 6383754e4fbaSMatthew G. Knepley . locX - The local solution 6384754e4fbaSMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems 6385754e4fbaSMatthew G. Knepley - user - An optional user context, passed to the pointwise functions 6386754e4fbaSMatthew G. Knepley 6387754e4fbaSMatthew G. Knepley Output Parameters: 6388754e4fbaSMatthew G. Knepley + Jac - The local Jacobian 6389754e4fbaSMatthew G. Knepley - JacP - The local Jacobian preconditioner 6390754e4fbaSMatthew G. Knepley 6391754e4fbaSMatthew G. Knepley Level: developer 6392754e4fbaSMatthew G. Knepley 6393754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeResidualByKey()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `PetscFormKey` 6394754e4fbaSMatthew G. Knepley @*/ 6395754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobianHybridByKey(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user) 6396d71ae5a4SJacob Faibussowitsch { 63973e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 63983e9753d6SMatthew G. Knepley const char *name = "Hybrid Jacobian"; 6399148442b3SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 6400148442b3SMatthew G. Knepley DMLabel ghostLabel = NULL; 64013e9753d6SMatthew G. Knepley DM plex = NULL; 64023e9753d6SMatthew G. Knepley DM plexA = NULL; 6403148442b3SMatthew G. Knepley PetscDS ds = NULL; 640407218a29SMatthew G. Knepley PetscDS dsIn = NULL; 6405148442b3SMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 6406148442b3SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 640707218a29SMatthew G. Knepley DM dmScale[3] = {NULL, NULL, NULL}; 640807218a29SMatthew G. Knepley PetscDS dsScale[3] = {NULL, NULL, NULL}; 640907218a29SMatthew G. Knepley Vec locS[3] = {NULL, NULL, NULL}; 64103e9753d6SMatthew G. Knepley PetscSection section = NULL; 6411148442b3SMatthew G. Knepley PetscSection sectionAux[3] = {NULL, NULL, NULL}; 64123e9753d6SMatthew G. Knepley DMField coordField = NULL; 641307218a29SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 641407218a29SMatthew G. Knepley PetscScalar *s[3] = {NULL, NULL, NULL}; 641507218a29SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 641607218a29SMatthew G. Knepley PetscScalar *elemMatNeg, *elemMatPos, *elemMatCoh; 641707218a29SMatthew G. Knepley PetscScalar *elemMatNegP, *elemMatPosP, *elemMatCohP; 6418e432b41dSStefano Zampini PetscSection globalSection; 6419989fa639SBrad Aagaard IS chunkISF, chunkISN; 64203e9753d6SMatthew G. Knepley const PetscInt *cells; 6421989fa639SBrad Aagaard PetscInt *faces, *neighbors; 64223e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 64233e2b0218SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, totDim, totDimIn, totDimAux[3], totDimScale[3], numChunks, cellChunkSize, chunk; 64241690c2aeSBarry Smith PetscInt maxDegree = PETSC_INT_MAX; 6425989fa639SBrad Aagaard PetscQuadrature affineQuadF = NULL, *quadsF = NULL; 6426989fa639SBrad Aagaard PetscFEGeom *affineGeomF = NULL, **geomsF = NULL; 6427989fa639SBrad Aagaard PetscQuadrature affineQuadN = NULL; 6428989fa639SBrad Aagaard PetscFEGeom *affineGeomN = NULL; 6429e432b41dSStefano Zampini PetscBool hasBdJac, hasBdPrec; 64303e9753d6SMatthew G. Knepley 64313e9753d6SMatthew G. Knepley PetscFunctionBegin; 64323cc88e6aSStefano Zampini PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 64333cc88e6aSStefano Zampini if (!cellIS) goto end; 6434437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 6435437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 64363cc88e6aSStefano Zampini if (cStart >= cEnd) goto end; 64375fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 64385fedec97SMatthew G. Knepley const char *name; 64399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 644063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 64415fedec97SMatthew G. Knepley } 64429566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 6443b98a7184SJames Wright PetscCall(DMGetLocalSection(dm, §ion)); 64449566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 64459566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 644607218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds, &dsIn)); 64479566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 64489566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 644907218a29SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsIn, &totDimIn)); 64509566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac)); 64519566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec)); 64529566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 6453148442b3SMatthew G. Knepley if (locA[2]) { 64541059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 64551059d808SMatthew G. Knepley 64569566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 64579566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA)); 6458b98a7184SJames Wright PetscCall(DMGetLocalSection(dmAux[2], §ionAux[2])); 645907218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2], NULL)); 64609566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 6461148442b3SMatthew G. Knepley { 6462148442b3SMatthew G. Knepley const PetscInt *cone; 6463148442b3SMatthew G. Knepley PetscInt c; 6464148442b3SMatthew G. Knepley 64651059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 6466148442b3SMatthew G. Knepley for (c = 0; c < 2; ++c) { 6467148442b3SMatthew G. Knepley const PetscInt *support; 6468148442b3SMatthew G. Knepley PetscInt ssize, s; 6469148442b3SMatthew G. Knepley 64709566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 64719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 64721059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 64731059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 64741059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 64751059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 64769566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 64779566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 6478ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 647907218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c], NULL)); 64809566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 6481148442b3SMatthew G. Knepley } 6482148442b3SMatthew G. Knepley } 64833e9753d6SMatthew G. Knepley } 648407218a29SMatthew G. Knepley /* Handle mass matrix scaling 648507218a29SMatthew G. Knepley The field in key[2] is the field to be scaled, and the scaling field is the first in the dsScale */ 648607218a29SMatthew G. Knepley PetscCall(DMGetAuxiliaryVec(dm, key[2].label, -key[2].value, key[2].part, &locS[2])); 648707218a29SMatthew G. Knepley if (locS[2]) { 64883e2b0218SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 648907218a29SMatthew G. Knepley PetscInt Nb, Nbs; 649007218a29SMatthew G. Knepley 649107218a29SMatthew G. Knepley PetscCall(VecGetDM(locS[2], &dmScale[2])); 649207218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[2], cells ? cells[cStart] : cStart, &dsScale[2], NULL)); 64933e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[2], &totDimScale[2])); 649407218a29SMatthew G. Knepley // BRAD: This is not set correctly 649507218a29SMatthew G. Knepley key[2].field = 2; 649607218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, key[2].field, &Nb)); 649707218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(dsScale[2], 0, &Nbs)); 649807218a29SMatthew G. Knepley PetscCheck(Nb == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Field %" PetscInt_FMT " of size %" PetscInt_FMT " cannot be scaled by field of size %" PetscInt_FMT, key[2].field, Nb, Nbs); 64993e2b0218SMatthew G. Knepley { 65003e2b0218SMatthew G. Knepley const PetscInt *cone; 65013e2b0218SMatthew G. Knepley PetscInt c; 65023e2b0218SMatthew G. Knepley 65033e2b0218SMatthew G. Knepley locS[1] = locS[0] = locS[2]; 65043e2b0218SMatthew G. Knepley dmScale[1] = dmScale[0] = dmScale[2]; 65053e2b0218SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 65063e2b0218SMatthew G. Knepley for (c = 0; c < 2; ++c) { 65073e2b0218SMatthew G. Knepley const PetscInt *support; 65083e2b0218SMatthew G. Knepley PetscInt ssize, s; 65093e2b0218SMatthew G. Knepley 65103e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 65113e2b0218SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 65123e2b0218SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 65133e2b0218SMatthew G. Knepley if (support[0] == cellStart) s = 1; 65143e2b0218SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 65153e2b0218SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 65163e2b0218SMatthew G. Knepley PetscCall(DMGetCellDS(dmScale[c], support[s], &dsScale[c], NULL)); 65173e2b0218SMatthew G. Knepley PetscCall(PetscDSGetTotalDimension(dsScale[c], &totDimScale[c])); 65183e2b0218SMatthew G. Knepley } 65193e2b0218SMatthew G. Knepley } 652007218a29SMatthew G. Knepley } 652107218a29SMatthew G. Knepley /* 2: Setup geometric data */ 65229566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 65239566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 65243e9753d6SMatthew G. Knepley if (maxDegree > 1) { 65253e9753d6SMatthew G. Knepley PetscInt f; 6526989fa639SBrad Aagaard PetscCall(PetscCalloc2(Nf, &quadsF, Nf, &geomsF)); 65273e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 65283e9753d6SMatthew G. Knepley PetscFE fe; 65293e9753d6SMatthew G. Knepley 65309566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 65313e9753d6SMatthew G. Knepley if (fe) { 6532989fa639SBrad Aagaard PetscCall(PetscFEGetQuadrature(fe, &quadsF[f])); 6533989fa639SBrad Aagaard PetscCall(PetscObjectReference((PetscObject)quadsF[f])); 65343e9753d6SMatthew G. Knepley } 65353e9753d6SMatthew G. Knepley } 65363e9753d6SMatthew G. Knepley } 653707218a29SMatthew G. Knepley /* Loop over chunks */ 65383e9753d6SMatthew G. Knepley cellChunkSize = numCells; 65393e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 6540989fa639SBrad Aagaard PetscCall(PetscCalloc2(2 * cellChunkSize, &faces, 2 * cellChunkSize, &neighbors)); 6541989fa639SBrad Aagaard PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkISF)); 6542989fa639SBrad Aagaard PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * cellChunkSize, neighbors, PETSC_USE_POINTER, &chunkISN)); 654307218a29SMatthew G. Knepley /* Extract field coefficients */ 654407218a29SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 654507218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 654607218a29SMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 65478bf0a22dSMatthew G. Knepley PetscCall(DMPlexGetHybridFields(dm, dmScale, dsScale, cellIS, locS, PETSC_TRUE, s)); 654807218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg)); 654907218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos)); 655007218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh)); 655107218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP)); 655207218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP)); 655307218a29SMatthew G. Knepley PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP)); 65543e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 65553e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 65563e9753d6SMatthew G. Knepley 655707218a29SMatthew G. Knepley if (hasBdJac) { 655807218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatNeg, cellChunkSize * totDim * totDim)); 655907218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatPos, cellChunkSize * totDim * totDim)); 656007218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatCoh, cellChunkSize * totDim * totDim)); 656107218a29SMatthew G. Knepley } 656207218a29SMatthew G. Knepley if (hasBdPrec) { 656307218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatNegP, cellChunkSize * totDim * totDim)); 656407218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatPosP, cellChunkSize * totDim * totDim)); 656507218a29SMatthew G. Knepley PetscCall(PetscArrayzero(elemMatCohP, cellChunkSize * totDim * totDim)); 656607218a29SMatthew G. Knepley } 65673e9753d6SMatthew G. Knepley /* Get faces */ 65683e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 65693e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 6570989fa639SBrad Aagaard const PetscInt *cone, *support; 65719566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex, cell, &cone)); 657207218a29SMatthew G. Knepley faces[(c - cS) * 2 + 0] = cone[0]; 657307218a29SMatthew G. Knepley faces[(c - cS) * 2 + 1] = cone[1]; 6574989fa639SBrad Aagaard PetscCall(DMPlexGetSupport(dm, cone[0], &support)); 6575989fa639SBrad Aagaard neighbors[(c - cS) * 2 + 0] = support[0] == cell ? support[1] : support[0]; 6576989fa639SBrad Aagaard PetscCall(DMPlexGetSupport(dm, cone[1], &support)); 6577989fa639SBrad Aagaard neighbors[(c - cS) * 2 + 1] = support[0] == cell ? support[1] : support[0]; 65783e9753d6SMatthew G. Knepley } 6579989fa639SBrad Aagaard PetscCall(ISGeneralSetIndices(chunkISF, 2 * cellChunkSize, faces, PETSC_USE_POINTER)); 6580989fa639SBrad Aagaard PetscCall(ISGeneralSetIndices(chunkISN, 2 * cellChunkSize, neighbors, PETSC_USE_POINTER)); 65813e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 6582989fa639SBrad Aagaard if (!affineQuadF) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkISF, &affineQuadF)); 6583989fa639SBrad Aagaard if (affineQuadF) PetscCall(DMSNESGetFEGeom(coordField, chunkISF, affineQuadF, PETSC_FEGEOM_COHESIVE, &affineGeomF)); 6584989fa639SBrad Aagaard if (!affineQuadN) { 6585989fa639SBrad Aagaard PetscInt dim; 6586989fa639SBrad Aagaard PetscCall(PetscQuadratureGetData(affineQuadF, &dim, NULL, NULL, NULL, NULL)); 6587989fa639SBrad Aagaard PetscCall(DMFieldCreateDefaultFaceQuadrature(coordField, chunkISN, &affineQuadN)); 6588989fa639SBrad Aagaard PetscCall(PetscQuadratureSetData(affineQuadN, dim + 1, PETSC_DECIDE, PETSC_DECIDE, NULL, NULL)); 6589989fa639SBrad Aagaard } 6590989fa639SBrad Aagaard if (affineQuadN) PetscCall(DMSNESGetFEGeom(coordField, chunkISN, affineQuadN, PETSC_FEGEOM_BASIC, &affineGeomN)); 65913e9753d6SMatthew G. Knepley } else { 65923e9753d6SMatthew G. Knepley PetscInt f; 65933e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 6594989fa639SBrad Aagaard if (quadsF[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkISF, quadsF[f], PETSC_FEGEOM_COHESIVE, &geomsF[f])); 65953e9753d6SMatthew G. Knepley } 65963e9753d6SMatthew G. Knepley } 65973e9753d6SMatthew G. Knepley 65983e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 65993e9753d6SMatthew G. Knepley PetscFE feI; 6600989fa639SBrad Aagaard PetscFEGeom *geomF = affineGeomF ? affineGeomF : geomsF[fieldI]; 6601989fa639SBrad Aagaard PetscFEGeom *chunkGeomF = NULL, *remGeomF = NULL; 6602989fa639SBrad Aagaard PetscFEGeom *geomN = affineGeomN ? affineGeomN : geomsF[fieldI]; 6603989fa639SBrad Aagaard PetscFEGeom *chunkGeomN = NULL, *remGeomN = NULL; 6604989fa639SBrad Aagaard PetscQuadrature quadF = affineQuadF ? affineQuadF : quadsF[fieldI]; 66053e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 66065fedec97SMatthew G. Knepley PetscBool isCohesiveField; 66073e9753d6SMatthew G. Knepley 66089566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI)); 66093e9753d6SMatthew G. Knepley if (!feI) continue; 66109566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches)); 6611989fa639SBrad Aagaard PetscCall(PetscQuadratureGetData(quadF, NULL, NULL, &Nq, NULL, NULL)); 66129566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feI, &Nb)); 66133e9753d6SMatthew G. Knepley blockSize = Nb; 66143e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 66159566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches)); 66163e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 66173e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 66183e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 66193e9753d6SMatthew G. Knepley offset = numCells - Nr; 6620989fa639SBrad Aagaard PetscCall(PetscFEGeomGetChunk(geomF, 0, offset * 2, &chunkGeomF)); 6621989fa639SBrad Aagaard PetscCall(PetscFEGeomGetChunk(geomF, offset * 2, numCells * 2, &remGeomF)); 6622989fa639SBrad Aagaard PetscCall(PetscFEGeomGetChunk(geomN, 0, offset * 2, &chunkGeomN)); 6623989fa639SBrad Aagaard PetscCall(PetscFEGeomGetChunk(geomN, offset * 2, numCells * 2, &remGeomN)); 66249566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField)); 66253e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 66263e9753d6SMatthew G. Knepley PetscFE feJ; 66273e9753d6SMatthew G. Knepley 66289566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ)); 66293e9753d6SMatthew G. Knepley if (!feJ) continue; 6630148442b3SMatthew G. Knepley key[0].field = fieldI * Nf + fieldJ; 6631148442b3SMatthew G. Knepley key[1].field = fieldI * Nf + fieldJ; 66325fedec97SMatthew G. Knepley key[2].field = fieldI * Nf + fieldJ; 6633148442b3SMatthew G. Knepley if (hasBdJac) { 6634989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNeg)); 6635989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], PetscSafePointerPlusOffset(a[0], offset * totDimAux[0]), t, X_tShift, &elemMatNeg[offset * totDim * totDim])); 6636989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPos)); 6637989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], PetscSafePointerPlusOffset(a[1], offset * totDimAux[1]), t, X_tShift, &elemMatPos[offset * totDim * totDim])); 6638148442b3SMatthew G. Knepley } 6639148442b3SMatthew G. Knepley if (hasBdPrec) { 6640989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatNegP)); 6641989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatNegP[offset * totDim * totDim])); 6642989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatPosP)); 6643989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatPosP[offset * totDim * totDim])); 6644148442b3SMatthew G. Knepley } 66455fedec97SMatthew G. Knepley if (hasBdJac) { 6646989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCoh)); 6647989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], PetscSafePointerPlusOffset(a[2], offset * totDimAux[2]), t, X_tShift, &elemMatCoh[offset * totDim * totDim])); 6648148442b3SMatthew G. Knepley } 66495fedec97SMatthew G. Knepley if (hasBdPrec) { 6650989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeomF, chunkGeomN, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatCohP)); 6651989fa639SBrad Aagaard PetscCall(PetscFEIntegrateHybridJacobian(ds, dsIn, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeomF, remGeomN, &u[offset * totDimIn], PetscSafePointerPlusOffset(u_t, offset * totDimIn), dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatCohP[offset * totDim * totDim])); 66523e9753d6SMatthew G. Knepley } 66533e9753d6SMatthew G. Knepley } 6654989fa639SBrad Aagaard PetscCall(PetscFEGeomRestoreChunk(geomF, offset, numCells, &remGeomF)); 6655989fa639SBrad Aagaard PetscCall(PetscFEGeomRestoreChunk(geomF, 0, offset, &chunkGeomF)); 6656989fa639SBrad Aagaard PetscCall(PetscFEGeomRestoreChunk(geomN, offset, numCells, &remGeomN)); 6657989fa639SBrad Aagaard PetscCall(PetscFEGeomRestoreChunk(geomN, 0, offset, &chunkGeomN)); 66583e9753d6SMatthew G. Knepley } 66593e9753d6SMatthew G. Knepley /* Insert values into matrix */ 66603e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 66613e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 666207218a29SMatthew G. Knepley const PetscInt cind = c - cS, coff = cind * totDim * totDim; 666307218a29SMatthew G. Knepley PetscInt i, j; 66643e9753d6SMatthew G. Knepley 666507218a29SMatthew G. Knepley /* Scale element values */ 666607218a29SMatthew G. Knepley if (locS[0]) { 66673e2b0218SMatthew G. Knepley PetscInt Nb, soff = cind * totDimScale[0], off = 0; 666807218a29SMatthew G. Knepley PetscBool cohesive; 666907218a29SMatthew G. Knepley 667007218a29SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 667107218a29SMatthew G. Knepley PetscCall(PetscDSGetFieldSize(ds, fieldI, &Nb)); 667207218a29SMatthew G. Knepley PetscCall(PetscDSGetCohesive(ds, fieldI, &cohesive)); 667307218a29SMatthew G. Knepley 667407218a29SMatthew G. Knepley if (fieldI == key[2].field) { 667507218a29SMatthew G. Knepley PetscCheck(cohesive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Scaling should not happen for face fields"); 66768bf0a22dSMatthew G. Knepley for (i = 0; i < Nb; ++i) { 667707218a29SMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNeg[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPos[coff + (off + i) * totDim + j]; 66788bf0a22dSMatthew G. Knepley if (hasBdPrec) 66798bf0a22dSMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += s[0][soff + i] * elemMatNegP[coff + (off + i) * totDim + j] + s[1][soff + i] * elemMatPosP[coff + (off + i) * totDim + j]; 66808bf0a22dSMatthew G. Knepley } 668107218a29SMatthew G. Knepley off += Nb; 668207218a29SMatthew G. Knepley } else { 668307218a29SMatthew G. Knepley const PetscInt N = cohesive ? Nb : Nb * 2; 668407218a29SMatthew G. Knepley 66858bf0a22dSMatthew G. Knepley for (i = 0; i < N; ++i) { 668607218a29SMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCoh[coff + (off + i) * totDim + j] += elemMatNeg[coff + (off + i) * totDim + j] + elemMatPos[coff + (off + i) * totDim + j]; 66878bf0a22dSMatthew G. Knepley if (hasBdPrec) 66888bf0a22dSMatthew G. Knepley for (j = 0; j < totDim; ++j) elemMatCohP[coff + (off + i) * totDim + j] += elemMatNegP[coff + (off + i) * totDim + j] + elemMatPosP[coff + (off + i) * totDim + j]; 66898bf0a22dSMatthew G. Knepley } 669007218a29SMatthew G. Knepley off += N; 669107218a29SMatthew G. Knepley } 669207218a29SMatthew G. Knepley } 669307218a29SMatthew G. Knepley } else { 669407218a29SMatthew G. Knepley for (i = 0; i < totDim * totDim; ++i) elemMatCoh[coff + i] += elemMatNeg[coff + i] + elemMatPos[coff + i]; 66958bf0a22dSMatthew G. Knepley if (hasBdPrec) 66968bf0a22dSMatthew G. Knepley for (i = 0; i < totDim * totDim; ++i) elemMatCohP[coff + i] += elemMatNegP[coff + i] + elemMatPosP[coff + i]; 669707218a29SMatthew G. Knepley } 66983e9753d6SMatthew G. Knepley if (hasBdPrec) { 66993e9753d6SMatthew G. Knepley if (hasBdJac) { 670007218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim])); 6701e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, Jac, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES)); 67023e9753d6SMatthew G. Knepley } 670307218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCohP[cind * totDim * totDim])); 670407218a29SMatthew G. Knepley PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatCohP[cind * totDim * totDim], ADD_VALUES)); 67053e9753d6SMatthew G. Knepley } else if (hasBdJac) { 670607218a29SMatthew G. Knepley if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatCoh[cind * totDim * totDim])); 6707e8e188d2SZach Atkins PetscCall(DMPlexMatSetClosure_Internal(plex, section, globalSection, mesh->useMatClPerm, JacP, cell, &elemMatCoh[cind * totDim * totDim], ADD_VALUES)); 67083e9753d6SMatthew G. Knepley } 67093e9753d6SMatthew G. Knepley } 67103e9753d6SMatthew G. Knepley } 67119566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 671207218a29SMatthew G. Knepley PetscCall(DMPlexRestoreHybridFields(dm, dmAux, dsAux, cellIS, locA, PETSC_TRUE, a)); 671307218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNeg)); 671407218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPos)); 671507218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCoh)); 671607218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatNegP)); 671707218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatPosP)); 671807218a29SMatthew G. Knepley PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatCohP)); 6719989fa639SBrad Aagaard PetscCall(PetscFree2(faces, neighbors)); 6720989fa639SBrad Aagaard PetscCall(ISDestroy(&chunkISF)); 6721989fa639SBrad Aagaard PetscCall(ISDestroy(&chunkISN)); 67229566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 67233e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 6724989fa639SBrad Aagaard PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuadF, PETSC_FALSE, &affineGeomF)); 6725989fa639SBrad Aagaard PetscCall(PetscQuadratureDestroy(&affineQuadF)); 6726989fa639SBrad Aagaard PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuadN, PETSC_FALSE, &affineGeomN)); 6727989fa639SBrad Aagaard PetscCall(PetscQuadratureDestroy(&affineQuadN)); 67283e9753d6SMatthew G. Knepley } else { 67293e9753d6SMatthew G. Knepley PetscInt f; 67303e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 6731989fa639SBrad Aagaard if (geomsF) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quadsF[f], PETSC_FALSE, &geomsF[f])); 6732989fa639SBrad Aagaard if (quadsF) PetscCall(PetscQuadratureDestroy(&quadsF[f])); 67333e9753d6SMatthew G. Knepley } 6734989fa639SBrad Aagaard PetscCall(PetscFree2(quadsF, geomsF)); 67353e9753d6SMatthew G. Knepley } 67369566063dSJacob Faibussowitsch if (dmAux[2]) PetscCall(DMDestroy(&plexA)); 67379566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 67383cc88e6aSStefano Zampini end: 67399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 67403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67413e9753d6SMatthew G. Knepley } 67428e3a2eefSMatthew G. Knepley 6743754e4fbaSMatthew G. Knepley /*@ 6744754e4fbaSMatthew G. Knepley DMPlexComputeJacobianActionByKey - Compute the local Jacobian for terms matching the input key 6745754e4fbaSMatthew G. Knepley 6746754e4fbaSMatthew G. Knepley Collective 67478e3a2eefSMatthew G. Knepley 67488e3a2eefSMatthew G. Knepley Input Parameters: 6749754e4fbaSMatthew G. Knepley + dm - The output `DM` 6750754e4fbaSMatthew G. Knepley . key - The `PetscFormKey` indicating what should be integrated 6751754e4fbaSMatthew G. Knepley . cellIS - The `IS` give a set of cells to integrate over 67528e3a2eefSMatthew G. Knepley . t - The time 6753754e4fbaSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with respect to $X_t$ 6754754e4fbaSMatthew G. Knepley . locX - The local solution 6755754e4fbaSMatthew G. Knepley . locX_t - The time derivative of the local solution, or `NULL` for time-independent problems 6756754e4fbaSMatthew G. Knepley . locY - The local vector acted on by J 6757754e4fbaSMatthew G. Knepley - user - An optional user context, passed to the pointwise functions 67588e3a2eefSMatthew G. Knepley 67598e3a2eefSMatthew G. Knepley Output Parameter: 6760754e4fbaSMatthew G. Knepley . locF - The local residual F = J(X) Y 67618e3a2eefSMatthew G. Knepley 6762754e4fbaSMatthew G. Knepley Level: developer 6763754e4fbaSMatthew G. Knepley 6764754e4fbaSMatthew G. Knepley .seealso: `DMPlexComputeResidualByKey()`, `DMPlexComputeJacobianByKey()`, `DMPlexComputeResidualHybridByKey()`, `DMPlexComputeJacobianHybridByKey()`, `PetscFormKey` 6765754e4fbaSMatthew G. Knepley @*/ 6766754e4fbaSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobianActionByKey(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Vec locY, Vec locF, void *user) 6767d71ae5a4SJacob Faibussowitsch { 67688e3a2eefSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 67698e3a2eefSMatthew G. Knepley const char *name = "Jacobian"; 67708e3a2eefSMatthew G. Knepley DM dmAux = NULL, plex, plexAux = NULL; 67718e3a2eefSMatthew G. Knepley DMEnclosureType encAux; 67728e3a2eefSMatthew G. Knepley Vec A; 67738e3a2eefSMatthew G. Knepley DMField coordField; 67748e3a2eefSMatthew G. Knepley PetscDS prob, probAux = NULL; 67758e3a2eefSMatthew G. Knepley PetscQuadrature quad; 67768e3a2eefSMatthew G. Knepley PetscSection section, globalSection, sectionAux; 67778e3a2eefSMatthew G. Knepley PetscScalar *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z; 67788e3a2eefSMatthew G. Knepley const PetscInt *cells; 67798e3a2eefSMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 67808e3a2eefSMatthew G. Knepley PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 67818e3a2eefSMatthew G. Knepley PetscBool hasDyn; 67828e3a2eefSMatthew G. Knepley 67838e3a2eefSMatthew G. Knepley PetscFunctionBegin; 67849566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 67859566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 67869566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 67879566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 67889566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 67899566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 679007218a29SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob, NULL)); 67919566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 67929566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 67939566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 67948e3a2eefSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 67959566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 67968e3a2eefSMatthew G. Knepley if (A) { 67979566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 67989566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 67999566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexAux)); 68009566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexAux, §ionAux)); 68019566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 68029566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 68038e3a2eefSMatthew G. Knepley } 6804754e4fbaSMatthew G. Knepley PetscCall(VecSet(locF, 0.0)); 6805754e4fbaSMatthew G. Knepley PetscCall(PetscMalloc6(numCells * totDim, &u, (locX_t ? (size_t)numCells * totDim : 0), &u_t, numCells * totDim * totDim, &elemMat, (hasDyn ? (size_t)numCells * totDim * totDim : 0), &elemMatD, numCells * totDim, &y, totDim, &z)); 68069566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 68079566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 68088e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 68098e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 68108e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 68118e3a2eefSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 68128e3a2eefSMatthew G. Knepley PetscInt i; 68138e3a2eefSMatthew G. Knepley 6814754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x)); 68158e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 6816754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x)); 6817754e4fbaSMatthew G. Knepley if (locX_t) { 6818754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t)); 68198e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 6820754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t)); 68218e3a2eefSMatthew G. Knepley } 68228e3a2eefSMatthew G. Knepley if (dmAux) { 68238e3a2eefSMatthew G. Knepley PetscInt subcell; 68249566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 68259566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 68268e3a2eefSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 68279566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 68288e3a2eefSMatthew G. Knepley } 6829754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecGetClosure(plex, section, locY, cell, NULL, &x)); 68308e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i]; 6831754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecRestoreClosure(plex, section, locY, cell, NULL, &x)); 68328e3a2eefSMatthew G. Knepley } 68339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 68349566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 68358e3a2eefSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 68368e3a2eefSMatthew G. Knepley PetscFE fe; 68378e3a2eefSMatthew G. Knepley PetscInt Nb; 68388e3a2eefSMatthew G. Knepley /* Conforming batches */ 68398e3a2eefSMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 68408e3a2eefSMatthew G. Knepley /* Remainder */ 68418e3a2eefSMatthew G. Knepley PetscInt Nr, offset, Nq; 68428e3a2eefSMatthew G. Knepley PetscQuadrature qGeom = NULL; 68438e3a2eefSMatthew G. Knepley PetscInt maxDegree; 68448e3a2eefSMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 68458e3a2eefSMatthew G. Knepley 68469566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 68479566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 68489566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 68499566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 68509566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 68519566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 68528e3a2eefSMatthew G. Knepley if (!qGeom) { 68539566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 68549566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 68558e3a2eefSMatthew G. Knepley } 68569566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 6857ac9d17c7SMatthew G. Knepley PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FEGEOM_BASIC, &cgeomFEM)); 68588e3a2eefSMatthew G. Knepley blockSize = Nb; 68598e3a2eefSMatthew G. Knepley batchSize = numBlocks * blockSize; 68609566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 68618e3a2eefSMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 68628e3a2eefSMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 68638e3a2eefSMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 68648e3a2eefSMatthew G. Knepley offset = numCells - Nr; 68659566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 68669566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 68678e3a2eefSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 68688e3a2eefSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 68699566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 68708e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, PetscSafePointerPlusOffset(a, offset * totDimAux), t, X_tShift, &elemMat[offset * totDim * totDim])); 68718e3a2eefSMatthew G. Knepley if (hasDyn) { 68729566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 68738e3a54c0SPierre Jolivet PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], PetscSafePointerPlusOffset(u_t, offset * totDim), probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim])); 68748e3a2eefSMatthew G. Knepley } 68758e3a2eefSMatthew G. Knepley } 68769566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 68779566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 68789566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 68799566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 68808e3a2eefSMatthew G. Knepley } 68818e3a2eefSMatthew G. Knepley if (hasDyn) { 68828e3a2eefSMatthew G. Knepley for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 68838e3a2eefSMatthew G. Knepley } 68848e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 68858e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 68868e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 68876497c311SBarry Smith const PetscBLASInt one = 1; 68886497c311SBarry Smith PetscBLASInt M; 68898e3a2eefSMatthew G. Knepley const PetscScalar a = 1.0, b = 0.0; 68908e3a2eefSMatthew G. Knepley 68916497c311SBarry Smith PetscCall(PetscBLASIntCast(totDim, &M)); 6892792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one)); 68938e3a2eefSMatthew G. Knepley if (mesh->printFEM > 1) { 68949566063dSJacob Faibussowitsch PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 68959566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim])); 68969566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Z", totDim, z)); 68978e3a2eefSMatthew G. Knepley } 6898754e4fbaSMatthew G. Knepley PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, z, ADD_VALUES)); 68998e3a2eefSMatthew G. Knepley } 69009566063dSJacob Faibussowitsch PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z)); 69018e3a2eefSMatthew G. Knepley if (mesh->printFEM) { 6902754e4fbaSMatthew G. Knepley PetscCall(PetscPrintf(PetscObjectComm((PetscObject)locF), "Z:\n")); 6903754e4fbaSMatthew G. Knepley PetscCall(VecView(locF, NULL)); 69048e3a2eefSMatthew G. Knepley } 69051059d808SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 69069566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 69079566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexAux)); 69089566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 69099566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 69103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 69118e3a2eefSMatthew G. Knepley } 6912d52c2f21SMatthew G. Knepley 6913d52c2f21SMatthew G. Knepley static void f0_1(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 6914d52c2f21SMatthew G. Knepley { 6915d52c2f21SMatthew G. Knepley f0[0] = u[0]; 6916d52c2f21SMatthew G. Knepley } 6917d52c2f21SMatthew G. Knepley 6918d52c2f21SMatthew G. Knepley static void f0_x(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 6919d52c2f21SMatthew G. Knepley { 6920d52c2f21SMatthew G. Knepley f0[0] = x[(int)PetscRealPart(constants[0])] * u[0]; 6921d52c2f21SMatthew G. Knepley } 6922d52c2f21SMatthew G. Knepley 6923d52c2f21SMatthew G. Knepley static void f0_x2(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 6924d52c2f21SMatthew G. Knepley { 6925d52c2f21SMatthew G. Knepley PetscInt d; 6926d52c2f21SMatthew G. Knepley 6927d52c2f21SMatthew G. Knepley f0[0] = 0.0; 6928d52c2f21SMatthew G. Knepley for (d = 0; d < dim; ++d) f0[0] += PetscSqr(x[d]) * u[0]; 6929d52c2f21SMatthew G. Knepley } 6930d52c2f21SMatthew G. Knepley 6931d52c2f21SMatthew G. Knepley /*@ 6932d52c2f21SMatthew G. Knepley DMPlexComputeMoments - Compute the first three moments for a field 6933d52c2f21SMatthew G. Knepley 6934d52c2f21SMatthew G. Knepley Noncollective 6935d52c2f21SMatthew G. Knepley 6936d52c2f21SMatthew G. Knepley Input Parameters: 6937d52c2f21SMatthew G. Knepley + dm - the `DMPLEX` 6938d52c2f21SMatthew G. Knepley - u - the field 6939d52c2f21SMatthew G. Knepley 6940d52c2f21SMatthew G. Knepley Output Parameter: 6941d52c2f21SMatthew G. Knepley . moments - the field moments 6942d52c2f21SMatthew G. Knepley 6943d52c2f21SMatthew G. Knepley Level: intermediate 6944d52c2f21SMatthew G. Knepley 6945d52c2f21SMatthew G. Knepley Note: 694617314648SMatthew G. Knepley The `moments` array should be of length cdim + 2, where cdim is the number of components for the coordinate field. 6947d52c2f21SMatthew G. Knepley 6948d52c2f21SMatthew G. Knepley .seealso: `DM`, `DMPLEX`, `DMSwarmComputeMoments()` 6949d52c2f21SMatthew G. Knepley @*/ 6950d52c2f21SMatthew G. Knepley PetscErrorCode DMPlexComputeMoments(DM dm, Vec u, PetscReal moments[]) 6951d52c2f21SMatthew G. Knepley { 6952d52c2f21SMatthew G. Knepley PetscDS ds; 6953d52c2f21SMatthew G. Knepley PetscScalar mom, constants[1]; 6954d52c2f21SMatthew G. Knepley const PetscScalar *oldConstants; 695517314648SMatthew G. Knepley PetscInt cdim, Nf, field = 0, Ncon; 6956d52c2f21SMatthew G. Knepley MPI_Comm comm; 6957d52c2f21SMatthew G. Knepley void *user; 6958d52c2f21SMatthew G. Knepley 6959d52c2f21SMatthew G. Knepley PetscFunctionBeginUser; 6960d52c2f21SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 696117314648SMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 6962d52c2f21SMatthew G. Knepley PetscCall(DMGetApplicationContext(dm, &user)); 6963d52c2f21SMatthew G. Knepley PetscCall(DMGetDS(dm, &ds)); 6964d52c2f21SMatthew G. Knepley PetscCall(PetscDSGetNumFields(ds, &Nf)); 6965d52c2f21SMatthew G. Knepley PetscCall(PetscDSGetConstants(ds, &Ncon, &oldConstants)); 6966d52c2f21SMatthew G. Knepley PetscCheck(Nf == 1, comm, PETSC_ERR_ARG_WRONG, "We currently only support 1 field, not %" PetscInt_FMT, Nf); 6967d52c2f21SMatthew G. Knepley PetscCall(PetscDSSetObjective(ds, field, &f0_1)); 6968d52c2f21SMatthew G. Knepley PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 6969d52c2f21SMatthew G. Knepley moments[0] = PetscRealPart(mom); 697017314648SMatthew G. Knepley for (PetscInt c = 0; c < cdim; ++c) { 6971d52c2f21SMatthew G. Knepley constants[0] = c; 697217314648SMatthew G. Knepley PetscCall(PetscDSSetConstants(ds, 1, constants)); 6973d52c2f21SMatthew G. Knepley PetscCall(PetscDSSetObjective(ds, field, &f0_x)); 6974d52c2f21SMatthew G. Knepley PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 6975d52c2f21SMatthew G. Knepley moments[c + 1] = PetscRealPart(mom); 6976d52c2f21SMatthew G. Knepley } 6977d52c2f21SMatthew G. Knepley PetscCall(PetscDSSetObjective(ds, field, &f0_x2)); 6978d52c2f21SMatthew G. Knepley PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 697917314648SMatthew G. Knepley moments[cdim + 1] = PetscRealPart(mom); 6980d52c2f21SMatthew G. Knepley PetscCall(PetscDSSetConstants(ds, Ncon, (PetscScalar *)oldConstants)); 6981d52c2f21SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6982d52c2f21SMatthew G. Knepley } 6983