xref: /petsc/src/dm/impls/plex/plexfem.c (revision ab6a962237c2b51fbabf9ba5e8c82bd4a18c2736)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>   /*I      "petscdmplex.h"   I*/
2da97024aSMatthew G. Knepley #include <petscsf.h>
3bfabdd78SPatrick Farrell #include <petscsnes.h>
4cb1e1211SMatthew G Knepley 
5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h>
6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
8a0845e3aSMatthew G. Knepley 
92f856554SMatthew G. Knepley static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy)
102f856554SMatthew G. Knepley {
112f856554SMatthew G. Knepley   PetscBool      isPlex;
122f856554SMatthew G. Knepley   PetscErrorCode ierr;
132f856554SMatthew G. Knepley 
142f856554SMatthew G. Knepley   PetscFunctionBegin;
152f856554SMatthew G. Knepley   ierr = PetscObjectTypeCompare((PetscObject) dm, DMPLEX, &isPlex);CHKERRQ(ierr);
162f856554SMatthew G. Knepley   if (isPlex) {
172f856554SMatthew G. Knepley     *plex = dm;
182f856554SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
192f856554SMatthew G. Knepley   } else {
202f856554SMatthew G. Knepley     ierr = PetscObjectQuery((PetscObject) dm, "dm_plex", (PetscObject *) plex);CHKERRQ(ierr);
212f856554SMatthew G. Knepley     if (!*plex) {
222f856554SMatthew G. Knepley       ierr = DMConvert(dm,DMPLEX,plex);CHKERRQ(ierr);
232f856554SMatthew G. Knepley       ierr = PetscObjectCompose((PetscObject) dm, "dm_plex", (PetscObject) *plex);CHKERRQ(ierr);
242f856554SMatthew G. Knepley       if (copy) {
252f856554SMatthew G. Knepley         const char *comps[3] = {"A", "dmAux"};
262f856554SMatthew G. Knepley         PetscObject obj;
272f856554SMatthew G. Knepley         PetscInt    i;
282f856554SMatthew G. Knepley 
292f856554SMatthew G. Knepley         {
302f856554SMatthew G. Knepley           /* Run the subdomain hook (this will copy the DMSNES/DMTS) */
312f856554SMatthew G. Knepley           DMSubDomainHookLink link;
322f856554SMatthew G. Knepley           for (link = dm->subdomainhook; link; link = link->next) {
332f856554SMatthew G. Knepley             if (link->ddhook) {ierr = (*link->ddhook)(dm, *plex, link->ctx);CHKERRQ(ierr);}
342f856554SMatthew G. Knepley           }
352f856554SMatthew G. Knepley         }
362f856554SMatthew G. Knepley         for (i = 0; i < 3; i++) {
372f856554SMatthew G. Knepley           ierr = PetscObjectQuery((PetscObject) dm, comps[i], &obj);CHKERRQ(ierr);
382f856554SMatthew G. Knepley           ierr = PetscObjectCompose((PetscObject) *plex, comps[i], obj);CHKERRQ(ierr);
392f856554SMatthew G. Knepley         }
402f856554SMatthew G. Knepley       }
412f856554SMatthew G. Knepley     } else {
422f856554SMatthew G. Knepley       ierr = PetscObjectReference((PetscObject) *plex);CHKERRQ(ierr);
432f856554SMatthew G. Knepley     }
442f856554SMatthew G. Knepley   }
452f856554SMatthew G. Knepley   PetscFunctionReturn(0);
462f856554SMatthew G. Knepley }
472f856554SMatthew G. Knepley 
489b6f715bSMatthew G. Knepley static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom (void *ctx)
499b6f715bSMatthew G. Knepley {
509b6f715bSMatthew G. Knepley   PetscFEGeom *geom = (PetscFEGeom *) ctx;
519b6f715bSMatthew G. Knepley   PetscErrorCode ierr;
529b6f715bSMatthew G. Knepley 
539b6f715bSMatthew G. Knepley   PetscFunctionBegin;
549b6f715bSMatthew G. Knepley   ierr = PetscFEGeomDestroy(&geom);CHKERRQ(ierr);
559b6f715bSMatthew G. Knepley   PetscFunctionReturn(0);
569b6f715bSMatthew G. Knepley }
579b6f715bSMatthew G. Knepley 
589b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
599b6f715bSMatthew G. Knepley {
609b6f715bSMatthew G. Knepley   char            composeStr[33] = {0};
619b6f715bSMatthew G. Knepley   PetscObjectId   id;
629b6f715bSMatthew G. Knepley   PetscContainer  container;
639b6f715bSMatthew G. Knepley   PetscErrorCode  ierr;
649b6f715bSMatthew G. Knepley 
659b6f715bSMatthew G. Knepley   PetscFunctionBegin;
669b6f715bSMatthew G. Knepley   ierr = PetscObjectGetId((PetscObject)quad,&id);CHKERRQ(ierr);
679b6f715bSMatthew G. Knepley   ierr = PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%x\n", id);CHKERRQ(ierr);
689b6f715bSMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container);CHKERRQ(ierr);
699b6f715bSMatthew G. Knepley   if (container) {
709b6f715bSMatthew G. Knepley     ierr = PetscContainerGetPointer(container, (void **) geom);CHKERRQ(ierr);
719b6f715bSMatthew G. Knepley   } else {
729b6f715bSMatthew G. Knepley     ierr = DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom);CHKERRQ(ierr);
739b6f715bSMatthew G. Knepley     ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr);
749b6f715bSMatthew G. Knepley     ierr = PetscContainerSetPointer(container, (void *) *geom);CHKERRQ(ierr);
759b6f715bSMatthew G. Knepley     ierr = PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom);CHKERRQ(ierr);
769b6f715bSMatthew G. Knepley     ierr = PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container);CHKERRQ(ierr);
779b6f715bSMatthew G. Knepley     ierr = PetscContainerDestroy(&container);CHKERRQ(ierr);
789b6f715bSMatthew G. Knepley   }
799b6f715bSMatthew G. Knepley   PetscFunctionReturn(0);
809b6f715bSMatthew G. Knepley }
819b6f715bSMatthew G. Knepley 
829b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
839b6f715bSMatthew G. Knepley {
849b6f715bSMatthew G. Knepley   PetscFunctionBegin;
859b6f715bSMatthew G. Knepley   *geom = NULL;
869b6f715bSMatthew G. Knepley   PetscFunctionReturn(0);
879b6f715bSMatthew G. Knepley }
889b6f715bSMatthew G. Knepley 
8946fa42a0SMatthew G. Knepley /*@
9046fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
9146fa42a0SMatthew G. Knepley 
9246fa42a0SMatthew G. Knepley   Not collective
9346fa42a0SMatthew G. Knepley 
9446fa42a0SMatthew G. Knepley   Input Arguments:
9546fa42a0SMatthew G. Knepley + dm   - the DM
9646fa42a0SMatthew G. Knepley - unit - The SI unit
9746fa42a0SMatthew G. Knepley 
9846fa42a0SMatthew G. Knepley   Output Argument:
9946fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
10046fa42a0SMatthew G. Knepley 
10146fa42a0SMatthew G. Knepley   Level: advanced
10246fa42a0SMatthew G. Knepley 
10346fa42a0SMatthew G. Knepley .seealso: DMPlexSetScale(), PetscUnit
10446fa42a0SMatthew G. Knepley @*/
105cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
106cb1e1211SMatthew G Knepley {
107cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex*) dm->data;
108cb1e1211SMatthew G Knepley 
109cb1e1211SMatthew G Knepley   PetscFunctionBegin;
110cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
111cb1e1211SMatthew G Knepley   PetscValidPointer(scale, 3);
112cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
113cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
114cb1e1211SMatthew G Knepley }
115cb1e1211SMatthew G Knepley 
11646fa42a0SMatthew G. Knepley /*@
11746fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
11846fa42a0SMatthew G. Knepley 
11946fa42a0SMatthew G. Knepley   Not collective
12046fa42a0SMatthew G. Knepley 
12146fa42a0SMatthew G. Knepley   Input Arguments:
12246fa42a0SMatthew G. Knepley + dm   - the DM
12346fa42a0SMatthew G. Knepley . unit - The SI unit
12446fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
12546fa42a0SMatthew G. Knepley 
12646fa42a0SMatthew G. Knepley   Level: advanced
12746fa42a0SMatthew G. Knepley 
12846fa42a0SMatthew G. Knepley .seealso: DMPlexGetScale(), PetscUnit
12946fa42a0SMatthew G. Knepley @*/
130cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
131cb1e1211SMatthew G Knepley {
132cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex*) dm->data;
133cb1e1211SMatthew G Knepley 
134cb1e1211SMatthew G Knepley   PetscFunctionBegin;
135cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
136cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
137cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
138cb1e1211SMatthew G Knepley }
139cb1e1211SMatthew G Knepley 
140d1828a1cSMatthew G. Knepley static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nf, PetscScalar *mode, void *ctx)
141026175e5SToby Isaac {
14212adca46SMatthew G. Knepley   const PetscInt eps[3][3][3] = {{{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, {{0, 0, -1}, {0, 0, 0}, {1, 0, 0}}, {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0}}};
143026175e5SToby Isaac   PetscInt *ctxInt  = (PetscInt *) ctx;
144ad917190SMatthew G. Knepley   PetscInt  dim2    = ctxInt[0];
145026175e5SToby Isaac   PetscInt  d       = ctxInt[1];
146026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
147026175e5SToby Isaac 
148ad917190SMatthew G. Knepley   PetscFunctionBegin;
149ad917190SMatthew G. Knepley   if (dim != dim2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %d does not match context dimension %d", dim, dim2);
150026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
151026175e5SToby Isaac   if (d < dim) {
15212adca46SMatthew G. Knepley     mode[d] = 1.; /* Translation along axis d */
153ad917190SMatthew G. Knepley   } else {
154026175e5SToby Isaac     for (i = 0; i < dim; i++) {
155026175e5SToby Isaac       for (j = 0; j < dim; j++) {
15612adca46SMatthew G. Knepley         mode[j] += eps[i][j][k]*X[i]; /* Rotation about axis d */
157026175e5SToby Isaac       }
158026175e5SToby Isaac     }
159026175e5SToby Isaac   }
160ad917190SMatthew G. Knepley   PetscFunctionReturn(0);
161026175e5SToby Isaac }
162026175e5SToby Isaac 
163cc4e42d9SMartin Diehl /*@
16412adca46SMatthew G. Knepley   DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation
165cb1e1211SMatthew G Knepley 
166cb1e1211SMatthew G Knepley   Collective on DM
167cb1e1211SMatthew G Knepley 
168cb1e1211SMatthew G Knepley   Input Arguments:
169026175e5SToby Isaac . dm - the DM
170cb1e1211SMatthew G Knepley 
171cb1e1211SMatthew G Knepley   Output Argument:
172cb1e1211SMatthew G Knepley . sp - the null space
173cb1e1211SMatthew G Knepley 
17412adca46SMatthew G. Knepley   Note: This is necessary to provide a suitable coarse space for algebraic multigrid
175cb1e1211SMatthew G Knepley 
176cb1e1211SMatthew G Knepley   Level: advanced
177cb1e1211SMatthew G Knepley 
17812adca46SMatthew G. Knepley .seealso: MatNullSpaceCreate(), PCGAMG
179cb1e1211SMatthew G Knepley @*/
180026175e5SToby Isaac PetscErrorCode DMPlexCreateRigidBody(DM dm, MatNullSpace *sp)
181cb1e1211SMatthew G Knepley {
182cb1e1211SMatthew G Knepley   MPI_Comm       comm;
183026175e5SToby Isaac   Vec            mode[6];
184026175e5SToby Isaac   PetscSection   section, globalSection;
185b247467aSMatthew G. Knepley   PetscInt       dim, dimEmbed, n, m, mmin, d, i, j;
186cb1e1211SMatthew G Knepley   PetscErrorCode ierr;
187cb1e1211SMatthew G Knepley 
188cb1e1211SMatthew G Knepley   PetscFunctionBegin;
189cb1e1211SMatthew G Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
190c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
1919d8fbdeaSMatthew G. Knepley   ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr);
192cb1e1211SMatthew G Knepley   if (dim == 1) {
193cb1e1211SMatthew G Knepley     ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr);
194cb1e1211SMatthew G Knepley     PetscFunctionReturn(0);
195cb1e1211SMatthew G Knepley   }
196e87a4003SBarry Smith   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
197e87a4003SBarry Smith   ierr = DMGetGlobalSection(dm, &globalSection);CHKERRQ(ierr);
198cb1e1211SMatthew G Knepley   ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr);
199b247467aSMatthew G. Knepley   m    = (dim*(dim+1))/2;
200cb1e1211SMatthew G Knepley   ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr);
201cb1e1211SMatthew G Knepley   ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr);
202cb1e1211SMatthew G Knepley   ierr = VecSetUp(mode[0]);CHKERRQ(ierr);
203b247467aSMatthew G. Knepley   ierr = VecGetSize(mode[0], &n);CHKERRQ(ierr);
204b247467aSMatthew G. Knepley   mmin = PetscMin(m, n);
205cb1e1211SMatthew G Knepley   for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);}
206026175e5SToby Isaac   for (d = 0; d < m; d++) {
207330485fdSToby Isaac     PetscInt         ctx[2];
208d1828a1cSMatthew G. Knepley     PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
209026175e5SToby Isaac     void            *voidctx = (void *) (&ctx[0]);
210cb1e1211SMatthew G Knepley 
2119d8fbdeaSMatthew G. Knepley     ctx[0] = dimEmbed;
212330485fdSToby Isaac     ctx[1] = d;
2130709b2feSToby Isaac     ierr = DMProjectFunction(dm, 0.0, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr);
214cb1e1211SMatthew G Knepley   }
215b247467aSMatthew G. Knepley   for (i = 0; i < PetscMin(dim, mmin); ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);}
216cb1e1211SMatthew G Knepley   /* Orthonormalize system */
217b247467aSMatthew G. Knepley   for (i = dim; i < mmin; ++i) {
218cb1e1211SMatthew G Knepley     PetscScalar dots[6];
219cb1e1211SMatthew G Knepley 
220cb1e1211SMatthew G Knepley     ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr);
221cb1e1211SMatthew G Knepley     for (j = 0; j < i; ++j) dots[j] *= -1.0;
222cb1e1211SMatthew G Knepley     ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr);
223cb1e1211SMatthew G Knepley     ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);
224cb1e1211SMatthew G Knepley   }
225b247467aSMatthew G. Knepley   ierr = MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp);CHKERRQ(ierr);
226b247467aSMatthew G. Knepley   for (i = 0; i < m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);}
227cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
228cb1e1211SMatthew G Knepley }
229cb1e1211SMatthew G Knepley 
230cc4e42d9SMartin Diehl /*@
23112adca46SMatthew G. Knepley   DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation
23212adca46SMatthew G. Knepley 
23312adca46SMatthew G. Knepley   Collective on DM
23412adca46SMatthew G. Knepley 
23512adca46SMatthew G. Knepley   Input Arguments:
23612adca46SMatthew G. Knepley + dm    - the DM
23712adca46SMatthew G. Knepley . nb    - The number of bodies
23812adca46SMatthew G. Knepley . label - The DMLabel marking each domain
23912adca46SMatthew G. Knepley . nids  - The number of ids per body
24012adca46SMatthew G. Knepley - ids   - An array of the label ids in sequence for each domain
24112adca46SMatthew G. Knepley 
24212adca46SMatthew G. Knepley   Output Argument:
24312adca46SMatthew G. Knepley . sp - the null space
24412adca46SMatthew G. Knepley 
24512adca46SMatthew G. Knepley   Note: This is necessary to provide a suitable coarse space for algebraic multigrid
24612adca46SMatthew G. Knepley 
24712adca46SMatthew G. Knepley   Level: advanced
24812adca46SMatthew G. Knepley 
24912adca46SMatthew G. Knepley .seealso: MatNullSpaceCreate()
25012adca46SMatthew G. Knepley @*/
25112adca46SMatthew G. Knepley PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp)
25212adca46SMatthew G. Knepley {
25312adca46SMatthew G. Knepley   MPI_Comm       comm;
25412adca46SMatthew G. Knepley   PetscSection   section, globalSection;
25512adca46SMatthew G. Knepley   Vec           *mode;
25612adca46SMatthew G. Knepley   PetscScalar   *dots;
25712adca46SMatthew G. Knepley   PetscInt       dim, dimEmbed, n, m, b, d, i, j, off;
25812adca46SMatthew G. Knepley   PetscErrorCode ierr;
25912adca46SMatthew G. Knepley 
26012adca46SMatthew G. Knepley   PetscFunctionBegin;
26112adca46SMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
26212adca46SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
26312adca46SMatthew G. Knepley   ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr);
264e87a4003SBarry Smith   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
265e87a4003SBarry Smith   ierr = DMGetGlobalSection(dm, &globalSection);CHKERRQ(ierr);
26612adca46SMatthew G. Knepley   ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr);
26712adca46SMatthew G. Knepley   m    = nb * (dim*(dim+1))/2;
26812adca46SMatthew G. Knepley   ierr = PetscMalloc2(m, &mode, m, &dots);CHKERRQ(ierr);
26912adca46SMatthew G. Knepley   ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr);
27012adca46SMatthew G. Knepley   ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr);
27112adca46SMatthew G. Knepley   ierr = VecSetUp(mode[0]);CHKERRQ(ierr);
27212adca46SMatthew G. Knepley   for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);}
27312adca46SMatthew G. Knepley   for (b = 0, off = 0; b < nb; ++b) {
27412adca46SMatthew G. Knepley     for (d = 0; d < m/nb; ++d) {
27512adca46SMatthew G. Knepley       PetscInt         ctx[2];
27612adca46SMatthew G. Knepley       PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
27712adca46SMatthew G. Knepley       void            *voidctx = (void *) (&ctx[0]);
27812adca46SMatthew G. Knepley 
27912adca46SMatthew G. Knepley       ctx[0] = dimEmbed;
28012adca46SMatthew G. Knepley       ctx[1] = d;
28112adca46SMatthew G. Knepley       ierr = DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr);
28212adca46SMatthew G. Knepley       off   += nids[b];
28312adca46SMatthew G. Knepley     }
28412adca46SMatthew G. Knepley   }
28512adca46SMatthew G. Knepley   for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);}
28612adca46SMatthew G. Knepley   /* Orthonormalize system */
28712adca46SMatthew G. Knepley   for (i = 0; i < m; ++i) {
28812adca46SMatthew G. Knepley     ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr);
28912adca46SMatthew G. Knepley     for (j = 0; j < i; ++j) dots[j] *= -1.0;
29012adca46SMatthew G. Knepley     ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr);
29112adca46SMatthew G. Knepley     ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);
29212adca46SMatthew G. Knepley   }
29312adca46SMatthew G. Knepley   ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr);
29412adca46SMatthew G. Knepley   for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);}
29512adca46SMatthew G. Knepley   ierr = PetscFree2(mode, dots);CHKERRQ(ierr);
29612adca46SMatthew G. Knepley   PetscFunctionReturn(0);
29712adca46SMatthew G. Knepley }
29812adca46SMatthew G. Knepley 
299b29cfa1cSToby Isaac /*@
300b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
301b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
302b29cfa1cSToby Isaac   evaluating the dual space basis of that point.  A basis function is associated with the point in its
303b29cfa1cSToby Isaac   transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum
304b29cfa1cSToby Isaac   projection height, which is set with this function.  By default, the maximum projection height is zero, which means
305b29cfa1cSToby Isaac   that only mesh cells are used to project basis functions.  A height of one, for example, evaluates a cell-interior
306b29cfa1cSToby Isaac   basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face.
307b29cfa1cSToby Isaac 
308b29cfa1cSToby Isaac   Input Parameters:
309b29cfa1cSToby Isaac + dm - the DMPlex object
310b29cfa1cSToby Isaac - height - the maximum projection height >= 0
311b29cfa1cSToby Isaac 
312b29cfa1cSToby Isaac   Level: advanced
313b29cfa1cSToby Isaac 
3144d6f44ffSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal()
315b29cfa1cSToby Isaac @*/
316b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
317b29cfa1cSToby Isaac {
318b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *) dm->data;
319b29cfa1cSToby Isaac 
320b29cfa1cSToby Isaac   PetscFunctionBegin;
321b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
322b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
323b29cfa1cSToby Isaac   PetscFunctionReturn(0);
324b29cfa1cSToby Isaac }
325b29cfa1cSToby Isaac 
326b29cfa1cSToby Isaac /*@
327b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
328b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
329b29cfa1cSToby Isaac 
330b29cfa1cSToby Isaac   Input Parameters:
331b29cfa1cSToby Isaac . dm - the DMPlex object
332b29cfa1cSToby Isaac 
333b29cfa1cSToby Isaac   Output Parameters:
334b29cfa1cSToby Isaac . height - the maximum projection height
335b29cfa1cSToby Isaac 
336b29cfa1cSToby Isaac   Level: intermediate
337b29cfa1cSToby Isaac 
3384d6f44ffSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal()
339b29cfa1cSToby Isaac @*/
340b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
341b29cfa1cSToby Isaac {
342b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *) dm->data;
343b29cfa1cSToby Isaac 
344b29cfa1cSToby Isaac   PetscFunctionBegin;
345b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
346b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
347b29cfa1cSToby Isaac   PetscFunctionReturn(0);
348b29cfa1cSToby Isaac }
349b29cfa1cSToby Isaac 
350ca3d3a14SMatthew G. Knepley typedef struct {
351ca3d3a14SMatthew G. Knepley   PetscReal    alpha; /* The first Euler angle, and in 2D the only one */
352ca3d3a14SMatthew G. Knepley   PetscReal    beta;  /* The second Euler angle */
353ca3d3a14SMatthew G. Knepley   PetscReal    gamma; /* The third Euler angle */
354ca3d3a14SMatthew G. Knepley   PetscInt     dim;   /* The dimension of R */
355ca3d3a14SMatthew G. Knepley   PetscScalar *R;     /* The rotation matrix, transforming a vector in the local basis to the global basis */
356ca3d3a14SMatthew G. Knepley   PetscScalar *RT;    /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */
357ca3d3a14SMatthew G. Knepley } RotCtx;
358ca3d3a14SMatthew G. Knepley 
359ca3d3a14SMatthew G. Knepley /*
360ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
361ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
362ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
363ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
364ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
365ca3d3a14SMatthew G. Knepley */
366ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx)
367ca3d3a14SMatthew G. Knepley {
368ca3d3a14SMatthew G. Knepley   RotCtx        *rc  = (RotCtx *) ctx;
369ca3d3a14SMatthew G. Knepley   PetscInt       dim = rc->dim;
370ca3d3a14SMatthew G. Knepley   PetscReal      c1, s1, c2, s2, c3, s3;
371ca3d3a14SMatthew G. Knepley   PetscErrorCode ierr;
372ca3d3a14SMatthew G. Knepley 
373ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
374ca3d3a14SMatthew G. Knepley   ierr = PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT);CHKERRQ(ierr);
375ca3d3a14SMatthew G. Knepley   switch (dim) {
376ca3d3a14SMatthew G. Knepley   case 2:
377ca3d3a14SMatthew G. Knepley     c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha);
378ca3d3a14SMatthew G. Knepley     rc->R[0] =  c1;rc->R[1] = s1;
379ca3d3a14SMatthew G. Knepley     rc->R[2] = -s1;rc->R[3] = c1;
380ca3d3a14SMatthew G. Knepley     ierr = PetscMemcpy(rc->RT, rc->R, PetscSqr(dim) * sizeof(PetscScalar));CHKERRQ(ierr);
381ca3d3a14SMatthew G. Knepley     DMPlex_Transpose2D_Internal(rc->RT);break;
382ca3d3a14SMatthew G. Knepley     break;
383ca3d3a14SMatthew G. Knepley   case 3:
384ca3d3a14SMatthew G. Knepley     c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha);
385ca3d3a14SMatthew G. Knepley     c2 = PetscCosReal(rc->beta); s2 = PetscSinReal(rc->beta);
386ca3d3a14SMatthew G. Knepley     c3 = PetscCosReal(rc->gamma);s3 = PetscSinReal(rc->gamma);
387ca3d3a14SMatthew G. Knepley     rc->R[0] =  c1*c3 - c2*s1*s3;rc->R[1] =  c3*s1    + c1*c2*s3;rc->R[2] = s2*s3;
388ca3d3a14SMatthew G. Knepley     rc->R[3] = -c1*s3 - c2*c3*s1;rc->R[4] =  c1*c2*c3 - s1*s3;   rc->R[5] = c3*s2;
389ca3d3a14SMatthew G. Knepley     rc->R[6] =  s1*s2;           rc->R[7] = -c1*s2;              rc->R[8] = c2;
390ca3d3a14SMatthew G. Knepley     ierr = PetscMemcpy(rc->RT, rc->R, PetscSqr(dim) * sizeof(PetscScalar));CHKERRQ(ierr);
391ca3d3a14SMatthew G. Knepley     DMPlex_Transpose3D_Internal(rc->RT);break;
392ca3d3a14SMatthew G. Knepley     break;
393ca3d3a14SMatthew G. Knepley   default: SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim);
394ca3d3a14SMatthew G. Knepley   }
395ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
396ca3d3a14SMatthew G. Knepley }
397ca3d3a14SMatthew G. Knepley 
398ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx)
399ca3d3a14SMatthew G. Knepley {
400ca3d3a14SMatthew G. Knepley   RotCtx        *rc = (RotCtx *) ctx;
401ca3d3a14SMatthew G. Knepley   PetscErrorCode ierr;
402ca3d3a14SMatthew G. Knepley 
403ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
404ca3d3a14SMatthew G. Knepley   ierr = PetscFree2(rc->R, rc->RT);CHKERRQ(ierr);
405ca3d3a14SMatthew G. Knepley   ierr = PetscFree(rc);CHKERRQ(ierr);
406ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
407ca3d3a14SMatthew G. Knepley }
408ca3d3a14SMatthew G. Knepley 
409ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx)
410ca3d3a14SMatthew G. Knepley {
411ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *) ctx;
412ca3d3a14SMatthew G. Knepley 
413ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
414ca3d3a14SMatthew G. Knepley   PetscValidPointer(ctx, 5);
415ca3d3a14SMatthew G. Knepley   if (l2g) {*A = rc->R;}
416ca3d3a14SMatthew G. Knepley   else     {*A = rc->RT;}
417ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
418ca3d3a14SMatthew G. Knepley }
419ca3d3a14SMatthew G. Knepley 
420*ab6a9622SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
421*ab6a9622SMatthew G. Knepley {
422*ab6a9622SMatthew G. Knepley   #if defined(PETSC_USE_COMPLEX)
423*ab6a9622SMatthew G. Knepley   switch (dim) {
424*ab6a9622SMatthew G. Knepley     case 2:
425*ab6a9622SMatthew G. Knepley     {
426*ab6a9622SMatthew G. Knepley       PetscScalar yt[2], zt[2];
427*ab6a9622SMatthew G. Knepley 
428*ab6a9622SMatthew G. Knepley       yt[0] = y[0]; yt[1] = y[1];
429*ab6a9622SMatthew G. Knepley       ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx);CHKERRQ(ierr);
430*ab6a9622SMatthew G. Knepley       z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]);
431*ab6a9622SMatthew G. Knepley     }
432*ab6a9622SMatthew G. Knepley     case 3:
433*ab6a9622SMatthew G. Knepley     {
434*ab6a9622SMatthew G. Knepley       PetscScalar yt[3], zt[3];
435*ab6a9622SMatthew G. Knepley 
436*ab6a9622SMatthew G. Knepley       yt[0] = y[0]; yt[1] = y[1]; yt[2] = y[2];
437*ab6a9622SMatthew G. Knepley       ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx);CHKERRQ(ierr);
438*ab6a9622SMatthew G. Knepley       z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]); z[2] = PetscRealPart(zt[2]);
439*ab6a9622SMatthew G. Knepley     }
440*ab6a9622SMatthew G. Knepley   }
441*ab6a9622SMatthew G. Knepley   #else
442*ab6a9622SMatthew G. Knepley   ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx);CHKERRQ(ierr);
443*ab6a9622SMatthew G. Knepley   #endif
444*ab6a9622SMatthew G. Knepley }
445*ab6a9622SMatthew G. Knepley 
446277523beSMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
447ca3d3a14SMatthew G. Knepley {
448ca3d3a14SMatthew G. Knepley   const PetscScalar *A;
449ca3d3a14SMatthew G. Knepley   PetscErrorCode     ierr;
450ca3d3a14SMatthew G. Knepley 
451ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
452ca3d3a14SMatthew G. Knepley   ierr = (*dm->transformGetMatrix)(dm, x, l2g, &A, ctx);CHKERRQ(ierr);
453ca3d3a14SMatthew G. Knepley   switch (dim) {
454ca3d3a14SMatthew G. Knepley   case 2: DMPlex_Mult2D_Internal(A, y, z);break;
455ca3d3a14SMatthew G. Knepley   case 3: DMPlex_Mult3D_Internal(A, y, z);break;
456ca3d3a14SMatthew G. Knepley   }
457ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
458ca3d3a14SMatthew G. Knepley }
459ca3d3a14SMatthew G. Knepley 
460ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a)
461ca3d3a14SMatthew G. Knepley {
462ca3d3a14SMatthew G. Knepley   PetscSection       ts;
463ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tva;
464ca3d3a14SMatthew G. Knepley   PetscInt           dof;
465ca3d3a14SMatthew G. Knepley   PetscErrorCode     ierr;
466ca3d3a14SMatthew G. Knepley 
467ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
468ca3d3a14SMatthew G. Knepley   ierr = DMGetSection(tdm, &ts);CHKERRQ(ierr);
469ca3d3a14SMatthew G. Knepley   ierr = PetscSectionGetFieldDof(ts, p, f, &dof);CHKERRQ(ierr);
470ca3d3a14SMatthew G. Knepley   ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr);
471ca3d3a14SMatthew G. Knepley   ierr = DMPlexPointLocalFieldRead(tdm, p, f, ta, (void *) &tva);CHKERRQ(ierr);
472ca3d3a14SMatthew G. Knepley   if (l2g) {
473ca3d3a14SMatthew G. Knepley     switch (dof) {
474ca3d3a14SMatthew G. Knepley     case 4: DMPlex_Mult2D_Internal(tva, a, a);break;
475ca3d3a14SMatthew G. Knepley     case 9: DMPlex_Mult3D_Internal(tva, a, a);break;
476ca3d3a14SMatthew G. Knepley     }
477ca3d3a14SMatthew G. Knepley   } else {
478ca3d3a14SMatthew G. Knepley     switch (dof) {
479ca3d3a14SMatthew G. Knepley     case 4: DMPlex_MultTranspose2D_Internal(tva, a, a);break;
480ca3d3a14SMatthew G. Knepley     case 9: DMPlex_MultTranspose3D_Internal(tva, a, a);break;
481ca3d3a14SMatthew G. Knepley     }
482ca3d3a14SMatthew G. Knepley   }
483ca3d3a14SMatthew G. Knepley   ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr);
484ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
485ca3d3a14SMatthew G. Knepley }
486ca3d3a14SMatthew G. Knepley 
487ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a)
488ca3d3a14SMatthew G. Knepley {
489ca3d3a14SMatthew G. Knepley   PetscSection       s, ts;
490ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tvaf, *tvag;
491ca3d3a14SMatthew G. Knepley   PetscInt           fdof, gdof, fpdof, gpdof;
492ca3d3a14SMatthew G. Knepley   PetscErrorCode     ierr;
493ca3d3a14SMatthew G. Knepley 
494ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
495ca3d3a14SMatthew G. Knepley   ierr = DMGetSection(dm, &s);CHKERRQ(ierr);
496ca3d3a14SMatthew G. Knepley   ierr = DMGetSection(tdm, &ts);CHKERRQ(ierr);
497ca3d3a14SMatthew G. Knepley   ierr = PetscSectionGetFieldDof(s, pf, f, &fpdof);CHKERRQ(ierr);
498ca3d3a14SMatthew G. Knepley   ierr = PetscSectionGetFieldDof(s, pg, g, &gpdof);CHKERRQ(ierr);
499ca3d3a14SMatthew G. Knepley   ierr = PetscSectionGetFieldDof(ts, pf, f, &fdof);CHKERRQ(ierr);
500ca3d3a14SMatthew G. Knepley   ierr = PetscSectionGetFieldDof(ts, pg, g, &gdof);CHKERRQ(ierr);
501ca3d3a14SMatthew G. Knepley   ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr);
502ca3d3a14SMatthew G. Knepley   ierr = DMPlexPointLocalFieldRead(tdm, pf, f, ta, (void *) &tvaf);CHKERRQ(ierr);
503ca3d3a14SMatthew G. Knepley   ierr = DMPlexPointLocalFieldRead(tdm, pg, g, ta, (void *) &tvag);CHKERRQ(ierr);
504ca3d3a14SMatthew G. Knepley   if (l2g) {
505ca3d3a14SMatthew G. Knepley     switch (fdof) {
506ca3d3a14SMatthew G. Knepley     case 4: DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);break;
507ca3d3a14SMatthew G. Knepley     case 9: DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);break;
508ca3d3a14SMatthew G. Knepley     }
509ca3d3a14SMatthew G. Knepley     switch (gdof) {
510ca3d3a14SMatthew G. Knepley     case 4: DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);break;
511ca3d3a14SMatthew G. Knepley     case 9: DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);break;
512ca3d3a14SMatthew G. Knepley     }
513ca3d3a14SMatthew G. Knepley   } else {
514ca3d3a14SMatthew G. Knepley     switch (fdof) {
515ca3d3a14SMatthew G. Knepley     case 4: DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);break;
516ca3d3a14SMatthew G. Knepley     case 9: DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);break;
517ca3d3a14SMatthew G. Knepley     }
518ca3d3a14SMatthew G. Knepley     switch (gdof) {
519ca3d3a14SMatthew G. Knepley     case 4: DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);break;
520ca3d3a14SMatthew G. Knepley     case 9: DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);break;
521ca3d3a14SMatthew G. Knepley     }
522ca3d3a14SMatthew G. Knepley   }
523ca3d3a14SMatthew G. Knepley   ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr);
524ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
525ca3d3a14SMatthew G. Knepley }
526ca3d3a14SMatthew G. Knepley 
527ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a)
528ca3d3a14SMatthew G. Knepley {
529ca3d3a14SMatthew G. Knepley   PetscSection    s;
530ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
531ca3d3a14SMatthew G. Knepley   IS              clPoints;
532ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
533ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
534ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, Np, cp, dof, d = 0;
535ca3d3a14SMatthew G. Knepley   PetscErrorCode  ierr;
536ca3d3a14SMatthew G. Knepley 
537ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
538ca3d3a14SMatthew G. Knepley   ierr = DMGetSection(dm, &s);CHKERRQ(ierr);
539ca3d3a14SMatthew G. Knepley   ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr);
540ca3d3a14SMatthew G. Knepley   ierr = DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr);
541ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
542ca3d3a14SMatthew G. Knepley     for (cp = 0; cp < Np*2; cp += 2) {
543ca3d3a14SMatthew G. Knepley       ierr = PetscSectionGetFieldDof(s, points[cp], f, &dof);CHKERRQ(ierr);
544ca3d3a14SMatthew G. Knepley       if (!dof) continue;
545ca3d3a14SMatthew G. Knepley       if (fieldActive[f]) {ierr = DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]);CHKERRQ(ierr);}
546ca3d3a14SMatthew G. Knepley       d += dof;
547ca3d3a14SMatthew G. Knepley     }
548ca3d3a14SMatthew G. Knepley   }
549ca3d3a14SMatthew G. Knepley   ierr = DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr);
550ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
551ca3d3a14SMatthew G. Knepley }
552ca3d3a14SMatthew G. Knepley 
553ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a)
554ca3d3a14SMatthew G. Knepley {
555ca3d3a14SMatthew G. Knepley   PetscSection    s;
556ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
557ca3d3a14SMatthew G. Knepley   IS              clPoints;
558ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
559ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
560ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c;
561ca3d3a14SMatthew G. Knepley   PetscErrorCode  ierr;
562ca3d3a14SMatthew G. Knepley 
563ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
564ca3d3a14SMatthew G. Knepley   ierr = DMGetSection(dm, &s);CHKERRQ(ierr);
565ca3d3a14SMatthew G. Knepley   ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr);
566ca3d3a14SMatthew G. Knepley   ierr = DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr);
567ca3d3a14SMatthew G. Knepley   for (f = 0, r = 0; f < Nf; ++f) {
568ca3d3a14SMatthew G. Knepley     for (cpf = 0; cpf < Np*2; cpf += 2) {
569ca3d3a14SMatthew G. Knepley       ierr = PetscSectionGetFieldDof(s, points[cpf], f, &fdof);CHKERRQ(ierr);
570ca3d3a14SMatthew G. Knepley       for (g = 0, c = 0; g < Nf; ++g) {
571ca3d3a14SMatthew G. Knepley         for (cpg = 0; cpg < Np*2; cpg += 2) {
572ca3d3a14SMatthew G. Knepley           ierr = PetscSectionGetFieldDof(s, points[cpg], g, &gdof);CHKERRQ(ierr);
573ca3d3a14SMatthew G. Knepley           ierr = DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r*lda+c]);CHKERRQ(ierr);
574ca3d3a14SMatthew G. Knepley           c += gdof;
575ca3d3a14SMatthew G. Knepley         }
576ca3d3a14SMatthew G. Knepley       }
577ca3d3a14SMatthew G. Knepley       if (c != lda) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %D should be %D", c, lda);
578ca3d3a14SMatthew G. Knepley       r += fdof;
579ca3d3a14SMatthew G. Knepley     }
580ca3d3a14SMatthew G. Knepley   }
581ca3d3a14SMatthew G. Knepley   if (r != lda) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %D should be %D", c, lda);
582ca3d3a14SMatthew G. Knepley   ierr = DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr);
583ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
584ca3d3a14SMatthew G. Knepley }
585ca3d3a14SMatthew G. Knepley 
586ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g)
587ca3d3a14SMatthew G. Knepley {
588ca3d3a14SMatthew G. Knepley   DM                 tdm;
589ca3d3a14SMatthew G. Knepley   Vec                tv;
590ca3d3a14SMatthew G. Knepley   PetscSection       ts, s;
591ca3d3a14SMatthew G. Knepley   const PetscScalar *ta;
592ca3d3a14SMatthew G. Knepley   PetscScalar       *a, *va;
593ca3d3a14SMatthew G. Knepley   PetscInt           pStart, pEnd, p, Nf, f;
594ca3d3a14SMatthew G. Knepley   PetscErrorCode     ierr;
595ca3d3a14SMatthew G. Knepley 
596ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
597ca3d3a14SMatthew G. Knepley   ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr);
598ca3d3a14SMatthew G. Knepley   ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr);
599ca3d3a14SMatthew G. Knepley   ierr = DMGetSection(tdm, &ts);CHKERRQ(ierr);
600ca3d3a14SMatthew G. Knepley   ierr = DMGetSection(dm, &s);CHKERRQ(ierr);
601ca3d3a14SMatthew G. Knepley   ierr = PetscSectionGetChart(s, &pStart, &pEnd);CHKERRQ(ierr);
602ca3d3a14SMatthew G. Knepley   ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr);
603ca3d3a14SMatthew G. Knepley   ierr = VecGetArray(lv, &a);CHKERRQ(ierr);
604ca3d3a14SMatthew G. Knepley   ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr);
605ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
606ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
607ca3d3a14SMatthew G. Knepley       ierr = DMPlexPointLocalFieldRef(dm, p, f, a, (void *) &va);CHKERRQ(ierr);
608ca3d3a14SMatthew G. Knepley       ierr = DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va);CHKERRQ(ierr);
609ca3d3a14SMatthew G. Knepley     }
610ca3d3a14SMatthew G. Knepley   }
611ca3d3a14SMatthew G. Knepley   ierr = VecRestoreArray(lv, &a);CHKERRQ(ierr);
612ca3d3a14SMatthew G. Knepley   ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr);
613ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
614ca3d3a14SMatthew G. Knepley }
615ca3d3a14SMatthew G. Knepley 
616ca3d3a14SMatthew G. Knepley /*@
617ca3d3a14SMatthew G. Knepley   DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis
618ca3d3a14SMatthew G. Knepley 
619ca3d3a14SMatthew G. Knepley   Input Parameters:
620ca3d3a14SMatthew G. Knepley + dm - The DM
621ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis
622ca3d3a14SMatthew G. Knepley 
623ca3d3a14SMatthew G. Knepley   Output Parameters:
624ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis
625ca3d3a14SMatthew G. Knepley 
626ca3d3a14SMatthew G. Knepley   Level: developer
627ca3d3a14SMatthew G. Knepley 
628ca3d3a14SMatthew G. Knepley .seealso: DMPlexLocalToGlobalBasis(), DMGetSection()
629ca3d3a14SMatthew G. Knepley @*/
630ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv)
631ca3d3a14SMatthew G. Knepley {
632ca3d3a14SMatthew G. Knepley   PetscErrorCode ierr;
633ca3d3a14SMatthew G. Knepley 
634ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
635ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
636ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
637ca3d3a14SMatthew G. Knepley   ierr = DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE);CHKERRQ(ierr);
638ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
639ca3d3a14SMatthew G. Knepley }
640ca3d3a14SMatthew G. Knepley 
641ca3d3a14SMatthew G. Knepley /*@
642ca3d3a14SMatthew G. Knepley   DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis
643ca3d3a14SMatthew G. Knepley 
644ca3d3a14SMatthew G. Knepley   Input Parameters:
645ca3d3a14SMatthew G. Knepley + dm - The DM
646ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis
647ca3d3a14SMatthew G. Knepley 
648ca3d3a14SMatthew G. Knepley   Output Parameters:
649ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis
650ca3d3a14SMatthew G. Knepley 
651ca3d3a14SMatthew G. Knepley   Level: developer
652ca3d3a14SMatthew G. Knepley 
653ca3d3a14SMatthew G. Knepley .seealso: DMPlexGlobalToLocalBasis(), DMGetSection()
654ca3d3a14SMatthew G. Knepley @*/
655ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv)
656ca3d3a14SMatthew G. Knepley {
657ca3d3a14SMatthew G. Knepley   PetscErrorCode ierr;
658ca3d3a14SMatthew G. Knepley 
659ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
660ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
661ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
662ca3d3a14SMatthew G. Knepley   ierr = DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE);CHKERRQ(ierr);
663ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
664ca3d3a14SMatthew G. Knepley }
665ca3d3a14SMatthew G. Knepley 
666ca3d3a14SMatthew G. Knepley /*@
667ca3d3a14SMatthew G. Knepley   DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions
668ca3d3a14SMatthew G. Knepley     and global solutions, to a local basis, appropriate for discretization integrals and assembly.
669ca3d3a14SMatthew G. Knepley 
670ca3d3a14SMatthew G. Knepley   Input Parameters:
671ca3d3a14SMatthew G. Knepley + dm    - The DM
672ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one
673ca3d3a14SMatthew G. Knepley . beta  - The second Euler angle
674ca3d3a14SMatthew G. Knepley . gamma - The third Euler angle
675ca3d3a14SMatthew G. Knepley 
676ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
677ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
678ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
679ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
680ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
681ca3d3a14SMatthew G. Knepley 
682ca3d3a14SMatthew G. Knepley   Level: developer
683ca3d3a14SMatthew G. Knepley 
684ca3d3a14SMatthew G. Knepley .seealso: DMPlexGlobalToLocalBasis(), DMPlexLocalToGlobalBasis()
685ca3d3a14SMatthew G. Knepley @*/
686ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma)
687ca3d3a14SMatthew G. Knepley {
688ca3d3a14SMatthew G. Knepley   RotCtx        *rc;
689ca3d3a14SMatthew G. Knepley   PetscInt       cdim;
690ca3d3a14SMatthew G. Knepley   PetscErrorCode ierr;
691ca3d3a14SMatthew G. Knepley 
692ca3d3a14SMatthew G. Knepley   ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr);
693ca3d3a14SMatthew G. Knepley   ierr = PetscMalloc1(1, &rc);CHKERRQ(ierr);
694ca3d3a14SMatthew G. Knepley   dm->transformCtx       = rc;
695ca3d3a14SMatthew G. Knepley   dm->transformSetUp     = DMPlexBasisTransformSetUp_Rotation_Internal;
696ca3d3a14SMatthew G. Knepley   dm->transformDestroy   = DMPlexBasisTransformDestroy_Rotation_Internal;
697ca3d3a14SMatthew G. Knepley   dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal;
698ca3d3a14SMatthew G. Knepley   rc->dim   = cdim;
699ca3d3a14SMatthew G. Knepley   rc->alpha = alpha;
700ca3d3a14SMatthew G. Knepley   rc->beta  = beta;
701ca3d3a14SMatthew G. Knepley   rc->gamma = gamma;
702ca3d3a14SMatthew G. Knepley   ierr = (*dm->transformSetUp)(dm, dm->transformCtx);CHKERRQ(ierr);
703ca3d3a14SMatthew G. Knepley   ierr = DMConstructBasisTransform_Internal(dm);CHKERRQ(ierr);
704ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
705ca3d3a14SMatthew G. Knepley }
706ca3d3a14SMatthew G. Knepley 
707b278463cSMatthew G. Knepley /*@C
708b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector
709b278463cSMatthew G. Knepley 
710b278463cSMatthew G. Knepley   Input Parameters:
711b278463cSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
712b278463cSMatthew G. Knepley . time   - The time
713b278463cSMatthew G. Knepley . field  - The field to constrain
7141c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
7151c531cf8SMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
716b278463cSMatthew G. Knepley . label  - The DMLabel defining constrained points
717b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
718b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
719b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
720b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
721b278463cSMatthew G. Knepley 
722b278463cSMatthew G. Knepley   Output Parameter:
723b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
724b278463cSMatthew G. Knepley 
725b278463cSMatthew G. Knepley   Level: developer
726b278463cSMatthew G. Knepley 
727b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary()
728b278463cSMatthew G. Knepley @*/
7291c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
73055f2e967SMatthew G. Knepley {
7310163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
73255f2e967SMatthew G. Knepley   void            **ctxs;
733d7ddef95SMatthew G. Knepley   PetscInt          numFields;
734d7ddef95SMatthew G. Knepley   PetscErrorCode    ierr;
735d7ddef95SMatthew G. Knepley 
736d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
737d7ddef95SMatthew G. Knepley   ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr);
738d7ddef95SMatthew G. Knepley   ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr);
739d7ddef95SMatthew G. Knepley   funcs[field] = func;
740d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
7411c531cf8SMatthew G. Knepley   ierr = DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr);
742d7ddef95SMatthew G. Knepley   ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr);
743d7ddef95SMatthew G. Knepley   PetscFunctionReturn(0);
744d7ddef95SMatthew G. Knepley }
745d7ddef95SMatthew G. Knepley 
746b278463cSMatthew G. Knepley /*@C
747b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector
748b278463cSMatthew G. Knepley 
749b278463cSMatthew G. Knepley   Input Parameters:
750b278463cSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
751b278463cSMatthew G. Knepley . time   - The time
752b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
753b278463cSMatthew G. Knepley . field  - The field to constrain
7541c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
7551c531cf8SMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
756b278463cSMatthew G. Knepley . label  - The DMLabel defining constrained points
757b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
758b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
759b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
760b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
761b278463cSMatthew G. Knepley 
762b278463cSMatthew G. Knepley   Output Parameter:
763b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
764b278463cSMatthew G. Knepley 
765b278463cSMatthew G. Knepley   Level: developer
766b278463cSMatthew G. Knepley 
767b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMAddBoundary()
768b278463cSMatthew G. Knepley @*/
7691c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[],
770c60e475cSMatthew G. Knepley                                                         void (*func)(PetscInt, PetscInt, PetscInt,
771c60e475cSMatthew G. Knepley                                                                      const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
772c60e475cSMatthew G. Knepley                                                                      const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
77397b6e6e8SMatthew G. Knepley                                                                      PetscReal, const PetscReal[], PetscInt, const PetscScalar[],
774b278463cSMatthew G. Knepley                                                                      PetscScalar[]),
775b278463cSMatthew G. Knepley                                                         void *ctx, Vec locX)
776c60e475cSMatthew G. Knepley {
777c60e475cSMatthew G. Knepley   void (**funcs)(PetscInt, PetscInt, PetscInt,
778c60e475cSMatthew G. Knepley                  const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
779c60e475cSMatthew G. Knepley                  const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
78097b6e6e8SMatthew G. Knepley                  PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
781c60e475cSMatthew G. Knepley   void            **ctxs;
782c60e475cSMatthew G. Knepley   PetscInt          numFields;
783c60e475cSMatthew G. Knepley   PetscErrorCode    ierr;
784c60e475cSMatthew G. Knepley 
785c60e475cSMatthew G. Knepley   PetscFunctionBegin;
786c60e475cSMatthew G. Knepley   ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr);
787c60e475cSMatthew G. Knepley   ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr);
788c60e475cSMatthew G. Knepley   funcs[field] = func;
789c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
7901c531cf8SMatthew G. Knepley   ierr = DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX);CHKERRQ(ierr);
791c60e475cSMatthew G. Knepley   ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr);
792c60e475cSMatthew G. Knepley   PetscFunctionReturn(0);
793c60e475cSMatthew G. Knepley }
794c60e475cSMatthew G. Knepley 
795b278463cSMatthew G. Knepley /*@C
796b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
797b278463cSMatthew G. Knepley 
798b278463cSMatthew G. Knepley   Input Parameters:
799b278463cSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
800b278463cSMatthew G. Knepley . time   - The time
801b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
802b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
803b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
804b278463cSMatthew G. Knepley . field  - The field to constrain
8051c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
8061c531cf8SMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
807b278463cSMatthew G. Knepley . label  - The DMLabel defining constrained points
808b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
809b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
810b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
811b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
812b278463cSMatthew G. Knepley 
813b278463cSMatthew G. Knepley   Output Parameter:
814b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
815b278463cSMatthew G. Knepley 
816b278463cSMatthew G. Knepley   Note: This implementation currently ignores the numcomps/comps argument from DMAddBoundary()
817b278463cSMatthew G. Knepley 
818b278463cSMatthew G. Knepley   Level: developer
819b278463cSMatthew G. Knepley 
820b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary()
821b278463cSMatthew G. Knepley @*/
8221c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[],
823b278463cSMatthew G. Knepley                                                  PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX)
824d7ddef95SMatthew G. Knepley {
82561f58d28SMatthew G. Knepley   PetscDS            prob;
826da97024aSMatthew G. Knepley   PetscSF            sf;
827d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
82820369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
829da97024aSMatthew G. Knepley   const PetscInt    *leaves;
830d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
831520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
832e735a8a9SMatthew G. Knepley   PetscErrorCode     ierr, ierru = 0;
833d7ddef95SMatthew G. Knepley 
834d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
835da97024aSMatthew G. Knepley   ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr);
836da97024aSMatthew G. Knepley   ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr);
837da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
838d7ddef95SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
839d7ddef95SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr);
84061f58d28SMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
841d7ddef95SMatthew G. Knepley   ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr);
842d7ddef95SMatthew G. Knepley   ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
84320369375SToby Isaac   if (cellGeometry) {
844d7ddef95SMatthew G. Knepley     ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr);
845d7ddef95SMatthew G. Knepley     ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);
84620369375SToby Isaac   }
847d7ddef95SMatthew G. Knepley   if (Grad) {
848c0a6632aSMatthew G. Knepley     PetscFV fv;
849c0a6632aSMatthew G. Knepley 
850c0a6632aSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fv);CHKERRQ(ierr);
851d7ddef95SMatthew G. Knepley     ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr);
852d7ddef95SMatthew G. Knepley     ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr);
853d7ddef95SMatthew G. Knepley     ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr);
85469291d52SBarry Smith     ierr = DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx);CHKERRQ(ierr);
855d7ddef95SMatthew G. Knepley   }
856d7ddef95SMatthew G. Knepley   ierr = VecGetArray(locX, &x);CHKERRQ(ierr);
857d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
858d7ddef95SMatthew G. Knepley     IS              faceIS;
859d7ddef95SMatthew G. Knepley     const PetscInt *faces;
860d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
861d7ddef95SMatthew G. Knepley 
862d7ddef95SMatthew G. Knepley     ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr);
863d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
864d7ddef95SMatthew G. Knepley     ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr);
865d7ddef95SMatthew G. Knepley     ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr);
866d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
867d7ddef95SMatthew G. Knepley       const PetscInt         face = faces[f], *cells;
868640bce14SSatish Balay       PetscFVFaceGeom        *fg;
869d7ddef95SMatthew G. Knepley 
870d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
871da97024aSMatthew G. Knepley       ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr);
872da97024aSMatthew G. Knepley       if (loc >= 0) continue;
873d7ddef95SMatthew G. Knepley       ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr);
874d7ddef95SMatthew G. Knepley       ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr);
875d7ddef95SMatthew G. Knepley       if (Grad) {
876640bce14SSatish Balay         PetscFVCellGeom       *cg;
877640bce14SSatish Balay         PetscScalar           *cx, *cgrad;
878d7ddef95SMatthew G. Knepley         PetscScalar           *xG;
879d7ddef95SMatthew G. Knepley         PetscReal              dx[3];
880d7ddef95SMatthew G. Knepley         PetscInt               d;
881d7ddef95SMatthew G. Knepley 
882d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr);
883d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr);
884d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr);
885520b3818SMatthew G. Knepley         ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr);
886d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
887d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx);
888e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx);
889e735a8a9SMatthew G. Knepley         if (ierru) {
890e735a8a9SMatthew G. Knepley           ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr);
891e735a8a9SMatthew G. Knepley           ierr = ISDestroy(&faceIS);CHKERRQ(ierr);
892e735a8a9SMatthew G. Knepley           goto cleanup;
893e735a8a9SMatthew G. Knepley         }
894d7ddef95SMatthew G. Knepley       } else {
895640bce14SSatish Balay         PetscScalar       *xI;
896d7ddef95SMatthew G. Knepley         PetscScalar       *xG;
897d7ddef95SMatthew G. Knepley 
898d7ddef95SMatthew G. Knepley         ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr);
899520b3818SMatthew G. Knepley         ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr);
900e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
901e735a8a9SMatthew G. Knepley         if (ierru) {
902e735a8a9SMatthew G. Knepley           ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr);
903e735a8a9SMatthew G. Knepley           ierr = ISDestroy(&faceIS);CHKERRQ(ierr);
904e735a8a9SMatthew G. Knepley           goto cleanup;
905e735a8a9SMatthew G. Knepley         }
906d7ddef95SMatthew G. Knepley       }
907d7ddef95SMatthew G. Knepley     }
908d7ddef95SMatthew G. Knepley     ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr);
909d7ddef95SMatthew G. Knepley     ierr = ISDestroy(&faceIS);CHKERRQ(ierr);
910d7ddef95SMatthew G. Knepley   }
911e735a8a9SMatthew G. Knepley   cleanup:
912d7ddef95SMatthew G. Knepley   ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr);
913d7ddef95SMatthew G. Knepley   if (Grad) {
91469291d52SBarry Smith     ierr = DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx);CHKERRQ(ierr);
915d7ddef95SMatthew G. Knepley     ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr);
916d7ddef95SMatthew G. Knepley   }
917e735a8a9SMatthew G. Knepley   if (cellGeometry) {ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);}
918d7ddef95SMatthew G. Knepley   ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
919e735a8a9SMatthew G. Knepley   CHKERRQ(ierru);
920d7ddef95SMatthew G. Knepley   PetscFunctionReturn(0);
921d7ddef95SMatthew G. Knepley }
922d7ddef95SMatthew G. Knepley 
923f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
924d7ddef95SMatthew G. Knepley {
925e5e52638SMatthew G. Knepley   PetscDS        prob;
926d7ddef95SMatthew G. Knepley   PetscInt       numBd, b;
92755f2e967SMatthew G. Knepley   PetscErrorCode ierr;
92855f2e967SMatthew G. Knepley 
92955f2e967SMatthew G. Knepley   PetscFunctionBegin;
930e5e52638SMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
931e5e52638SMatthew G. Knepley   ierr = PetscDSGetNumBoundary(prob, &numBd);CHKERRQ(ierr);
93255f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
933f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
934648eda8cSMatthew G. Knepley     const char             *name, *labelname;
935d7ddef95SMatthew G. Knepley     DMLabel                 label;
9361c531cf8SMatthew G. Knepley     PetscInt                field, Nc;
9371c531cf8SMatthew G. Knepley     const PetscInt         *comps;
938d7ddef95SMatthew G. Knepley     PetscObject             obj;
939d7ddef95SMatthew G. Knepley     PetscClassId            id;
940a30ec4eaSSatish Balay     void                    (*func)(void);
941d7ddef95SMatthew G. Knepley     PetscInt                numids;
942d7ddef95SMatthew G. Knepley     const PetscInt         *ids;
94355f2e967SMatthew G. Knepley     void                   *ctx;
94455f2e967SMatthew G. Knepley 
945648eda8cSMatthew G. Knepley     ierr = DMGetBoundary(dm, b, &type, &name, &labelname, &field, &Nc, &comps, &func, &numids, &ids, &ctx);CHKERRQ(ierr);
946f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
947c58f1c22SToby Isaac     ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr);
948648eda8cSMatthew G. Knepley     if (!label) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONGSTATE, "Label %s for boundary condition %s does not exist in the DM", labelname, name);
94944a7f3ddSMatthew G. Knepley     ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr);
950d7ddef95SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
951d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
952c60e475cSMatthew G. Knepley       switch (type) {
953c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
954c60e475cSMatthew G. Knepley       case DM_BC_ESSENTIAL:
955092e5057SToby Isaac         ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr);
9561c531cf8SMatthew G. Knepley         ierr = DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, (PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr);
957092e5057SToby Isaac         ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr);
958c60e475cSMatthew G. Knepley         break;
959c60e475cSMatthew G. Knepley       case DM_BC_ESSENTIAL_FIELD:
960c60e475cSMatthew G. Knepley         ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr);
9611c531cf8SMatthew G. Knepley         ierr = DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids,
962b278463cSMatthew G. Knepley                                                         (void (*)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
963c60e475cSMatthew G. Knepley                                                                   const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
96497b6e6e8SMatthew G. Knepley                                                                   PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[])) func, ctx, locX);CHKERRQ(ierr);
965c60e475cSMatthew G. Knepley         ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr);
966c60e475cSMatthew G. Knepley         break;
967c60e475cSMatthew G. Knepley       default: break;
968c60e475cSMatthew G. Knepley       }
969d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
97043ea7facSMatthew G. Knepley       if (!faceGeomFVM) continue;
9711c531cf8SMatthew G. Knepley       ierr = DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids,
972b278463cSMatthew G. Knepley                                                (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr);
973d7ddef95SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
97455f2e967SMatthew G. Knepley   }
97555f2e967SMatthew G. Knepley   PetscFunctionReturn(0);
97655f2e967SMatthew G. Knepley }
97755f2e967SMatthew G. Knepley 
978f1d73a7aSMatthew G. Knepley /*@
979f1d73a7aSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
980f1d73a7aSMatthew G. Knepley 
981f1d73a7aSMatthew G. Knepley   Input Parameters:
982f1d73a7aSMatthew G. Knepley + dm - The DM
983f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
984f1d73a7aSMatthew G. Knepley . time - The time
985f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations
986f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations
987f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations
988f1d73a7aSMatthew G. Knepley 
989f1d73a7aSMatthew G. Knepley   Output Parameters:
990f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values
991f1d73a7aSMatthew G. Knepley 
992f1d73a7aSMatthew G. Knepley   Level: developer
993f1d73a7aSMatthew G. Knepley 
994f1d73a7aSMatthew G. Knepley .seealso: DMProjectFunctionLabelLocal()
995f1d73a7aSMatthew G. Knepley @*/
996f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
997f1d73a7aSMatthew G. Knepley {
998f1d73a7aSMatthew G. Knepley   PetscErrorCode ierr;
999f1d73a7aSMatthew G. Knepley 
1000f1d73a7aSMatthew G. Knepley   PetscFunctionBegin;
1001f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1002f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 2);
1003f1d73a7aSMatthew G. Knepley   if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);}
1004f1d73a7aSMatthew G. Knepley   if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);}
1005f1d73a7aSMatthew G. Knepley   if (gradFVM)     {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);}
1006f1d73a7aSMatthew G. Knepley   ierr = PetscTryMethod(dm,"DMPlexInsertBoundaryValues_C",(DM,PetscBool,Vec,PetscReal,Vec,Vec,Vec),(dm,insertEssential,locX,time,faceGeomFVM,cellGeomFVM,gradFVM));CHKERRQ(ierr);
1007f1d73a7aSMatthew G. Knepley   PetscFunctionReturn(0);
1008f1d73a7aSMatthew G. Knepley }
1009f1d73a7aSMatthew G. Knepley 
10100709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1011cb1e1211SMatthew G Knepley {
1012574a98acSMatthew G. Knepley   Vec              localX;
1013574a98acSMatthew G. Knepley   PetscErrorCode   ierr;
1014574a98acSMatthew G. Knepley 
1015574a98acSMatthew G. Knepley   PetscFunctionBegin;
1016574a98acSMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
10175d42b983SMatthew G. Knepley   ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL);CHKERRQ(ierr);
1018574a98acSMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
1019574a98acSMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
1020574a98acSMatthew G. Knepley   ierr = DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff);CHKERRQ(ierr);
1021574a98acSMatthew G. Knepley   ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
1022574a98acSMatthew G. Knepley   PetscFunctionReturn(0);
1023574a98acSMatthew G. Knepley }
1024574a98acSMatthew G. Knepley 
1025574a98acSMatthew G. Knepley /*@C
1026ca3d3a14SMatthew G. Knepley   DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
1027574a98acSMatthew G. Knepley 
1028574a98acSMatthew G. Knepley   Input Parameters:
1029574a98acSMatthew G. Knepley + dm     - The DM
1030574a98acSMatthew G. Knepley . time   - The time
1031574a98acSMatthew G. Knepley . funcs  - The functions to evaluate for each field component
1032574a98acSMatthew G. Knepley . ctxs   - Optional array of contexts to pass to each function, or NULL.
1033574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector
1034574a98acSMatthew G. Knepley 
1035574a98acSMatthew G. Knepley   Output Parameter:
1036574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2
1037574a98acSMatthew G. Knepley 
1038574a98acSMatthew G. Knepley   Level: developer
1039574a98acSMatthew G. Knepley 
1040574a98acSMatthew G. Knepley .seealso: DMProjectFunction(), DMComputeL2FieldDiff(), DMComputeL2GradientDiff()
1041574a98acSMatthew G. Knepley @*/
1042574a98acSMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff)
1043574a98acSMatthew G. Knepley {
10440f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex*)dm->data)->printL2;
1045ca3d3a14SMatthew G. Knepley   DM               tdm;
1046ca3d3a14SMatthew G. Knepley   Vec              tv;
1047cb1e1211SMatthew G Knepley   PetscSection     section;
1048c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
104915496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
1050ca3d3a14SMatthew G. Knepley   PetscReal       *coords, *gcoords, *detJ, *J;
1051cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
10527318780aSToby Isaac   const PetscReal *quadWeights;
1053aed3cbd0SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, cEndInterior, c, field, fieldOffset;
1054ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1055cb1e1211SMatthew G Knepley   PetscErrorCode   ierr;
1056cb1e1211SMatthew G Knepley 
1057cb1e1211SMatthew G Knepley   PetscFunctionBegin;
1058c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
10597318780aSToby Isaac   ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr);
1060e87a4003SBarry Smith   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
1061cb1e1211SMatthew G Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
1062ca3d3a14SMatthew G. Knepley   ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr);
1063ca3d3a14SMatthew G. Knepley   ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr);
1064ca3d3a14SMatthew G. Knepley   ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr);
1065cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
106615496722SMatthew G. Knepley     PetscObject  obj;
106715496722SMatthew G. Knepley     PetscClassId id;
1068c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
1069c5bbbd5bSMatthew G. Knepley 
107044a7f3ddSMatthew G. Knepley     ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr);
107115496722SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
107215496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
107315496722SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
107415496722SMatthew G. Knepley 
10750f2d7e86SMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
10760f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
107715496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
107815496722SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
107915496722SMatthew G. Knepley 
108015496722SMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr);
108115496722SMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
108215496722SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
1083c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
1084cb1e1211SMatthew G Knepley   }
10859c3cf19fSMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights);CHKERRQ(ierr);
1086beaa55a6SMatthew G. Knepley   if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents);
10877318780aSToby Isaac   ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr);
1088aed3cbd0SMatthew G. Knepley   ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr);
1089aed3cbd0SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr);
10909ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
10919ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
1092cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
1093a1e44745SMatthew G. Knepley     PetscScalar *x = NULL;
1094cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
10959c3cf19fSMatthew G. Knepley     PetscInt     qc = 0;
1096cb1e1211SMatthew G Knepley 
10977318780aSToby Isaac     ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr);
1098cb1e1211SMatthew G Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
1099cb1e1211SMatthew G Knepley 
110015496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
110115496722SMatthew G. Knepley       PetscObject  obj;
110215496722SMatthew G. Knepley       PetscClassId id;
1103c110b1eeSGeoffrey Irving       void * const ctx = ctxs ? ctxs[field] : NULL;
110415496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1105cb1e1211SMatthew G Knepley 
110644a7f3ddSMatthew G. Knepley       ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr);
110715496722SMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
110815496722SMatthew G. Knepley       if (id == PETSCFE_CLASSID)      {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);}
110915496722SMatthew G. Knepley       else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;}
111015496722SMatthew G. Knepley       else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
1111cb1e1211SMatthew G Knepley       if (debug) {
1112cb1e1211SMatthew G Knepley         char title[1024];
1113cb1e1211SMatthew G Knepley         ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr);
11144c848028SMatthew G. Knepley         ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr);
1115cb1e1211SMatthew G Knepley       }
11167318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
11177318780aSToby Isaac         if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, point %D", detJ[q], c, q);
1118ca3d3a14SMatthew G. Knepley         if (transform) {gcoords = &coords[coordDim*Nq];
1119*ab6a9622SMatthew G. Knepley                         ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr);}
1120ca3d3a14SMatthew G. Knepley         else           {gcoords = &coords[coordDim*q];}
1121ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx);
1122e735a8a9SMatthew G. Knepley         if (ierr) {
1123e735a8a9SMatthew G. Knepley           PetscErrorCode ierr2;
1124e735a8a9SMatthew G. Knepley           ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2);
1125e735a8a9SMatthew G. Knepley           ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2);
11267318780aSToby Isaac           ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2);
1127e735a8a9SMatthew G. Knepley           CHKERRQ(ierr);
1128e735a8a9SMatthew G. Knepley         }
1129ca3d3a14SMatthew G. Knepley         if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);}
113015496722SMatthew G. Knepley         if (id == PETSCFE_CLASSID)      {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
113115496722SMatthew G. Knepley         else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
113215496722SMatthew G. Knepley         else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
113315496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1134beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)];
1135beaa55a6SMatthew G. Knepley           if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "    elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]);CHKERRQ(ierr);}
1136beaa55a6SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q];
1137cb1e1211SMatthew G Knepley         }
1138cb1e1211SMatthew G Knepley       }
11399c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
1140beaa55a6SMatthew G. Knepley       qc += Nc;
1141cb1e1211SMatthew G Knepley     }
1142cb1e1211SMatthew G Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
1143cb1e1211SMatthew G Knepley     if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);}
1144cb1e1211SMatthew G Knepley     localDiff += elemDiff;
1145cb1e1211SMatthew G Knepley   }
11467318780aSToby Isaac   ierr  = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr);
1147b2566f29SBarry Smith   ierr  = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
1148cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
1149cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
1150cb1e1211SMatthew G Knepley }
1151cb1e1211SMatthew G Knepley 
1152b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
1153cb1e1211SMatthew G Knepley {
11540f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex*)dm->data)->printL2;
1155ca3d3a14SMatthew G. Knepley   DM               tdm;
1156cb1e1211SMatthew G Knepley   PetscSection     section;
115740e14135SMatthew G. Knepley   PetscQuadrature  quad;
1158ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
11599c3cf19fSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
11609c3cf19fSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1161ca3d3a14SMatthew G. Knepley   PetscReal       *coords, *gcoords, *realSpaceDer, *J, *invJ, *detJ;
116240e14135SMatthew G. Knepley   PetscReal        localDiff = 0.0;
11639c3cf19fSMatthew G. Knepley   PetscInt         dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, cEndInterior, c, field, fieldOffset;
1164ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1165cb1e1211SMatthew G Knepley   PetscErrorCode   ierr;
1166cb1e1211SMatthew G Knepley 
1167cb1e1211SMatthew G Knepley   PetscFunctionBegin;
1168c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
11697318780aSToby Isaac   ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr);
1170e87a4003SBarry Smith   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
117140e14135SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
117240e14135SMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
117340e14135SMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
117440e14135SMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
1175ca3d3a14SMatthew G. Knepley   ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr);
1176ca3d3a14SMatthew G. Knepley   ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr);
1177ca3d3a14SMatthew G. Knepley   ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr);
1178652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
11790f2d7e86SMatthew G. Knepley     PetscFE  fe;
118040e14135SMatthew G. Knepley     PetscInt Nc;
1181652b88e8SMatthew G. Knepley 
118244a7f3ddSMatthew G. Knepley     ierr = DMGetField(dm, field, NULL, (PetscObject *) &fe);CHKERRQ(ierr);
11830f2d7e86SMatthew G. Knepley     ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
11840f2d7e86SMatthew G. Knepley     ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
118540e14135SMatthew G. Knepley     numComponents += Nc;
1186652b88e8SMatthew G. Knepley   }
11879c3cf19fSMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
1188beaa55a6SMatthew G. Knepley   if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents);
11894d6f44ffSToby Isaac   /* ierr = DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */
11909c3cf19fSMatthew G. Knepley   ierr = PetscMalloc7(numComponents,&funcVal,coordDim*Nq,&coords,coordDim*Nq,&realSpaceDer,coordDim*coordDim*Nq,&J,coordDim*coordDim*Nq,&invJ,numComponents,&interpolant,Nq,&detJ);CHKERRQ(ierr);
119140e14135SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
11929ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
11939ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
119440e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
119540e14135SMatthew G. Knepley     PetscScalar *x = NULL;
119640e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
11979c3cf19fSMatthew G. Knepley     PetscInt     qc = 0;
1198652b88e8SMatthew G. Knepley 
11997318780aSToby Isaac     ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, invJ, detJ);CHKERRQ(ierr);
120040e14135SMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
120140e14135SMatthew G. Knepley 
12029c3cf19fSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
12030f2d7e86SMatthew G. Knepley       PetscFE          fe;
120451259fa3SMatthew G. Knepley       void * const     ctx = ctxs ? ctxs[field] : NULL;
120540e14135SMatthew G. Knepley       PetscReal       *basisDer;
12069c3cf19fSMatthew G. Knepley       PetscInt         Nb, Nc, q, fc;
120740e14135SMatthew G. Knepley 
120844a7f3ddSMatthew G. Knepley       ierr = DMGetField(dm, field, NULL, (PetscObject *) &fe);CHKERRQ(ierr);
12090f2d7e86SMatthew G. Knepley       ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr);
12109c3cf19fSMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
12110f2d7e86SMatthew G. Knepley       ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr);
121240e14135SMatthew G. Knepley       if (debug) {
121340e14135SMatthew G. Knepley         char title[1024];
121440e14135SMatthew G. Knepley         ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr);
12159c3cf19fSMatthew G. Knepley         ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr);
1216652b88e8SMatthew G. Knepley       }
12179c3cf19fSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
12187318780aSToby Isaac         if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q);
1219ca3d3a14SMatthew G. Knepley         if (transform) {gcoords = &coords[coordDim*Nq];
1220*ab6a9622SMatthew G. Knepley                         ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr);}
1221ca3d3a14SMatthew G. Knepley         else           {gcoords = &coords[coordDim*q];}
12227318780aSToby Isaac         ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], n, numFields, funcVal, ctx);
1223e735a8a9SMatthew G. Knepley         if (ierr) {
1224e735a8a9SMatthew G. Knepley           PetscErrorCode ierr2;
1225e735a8a9SMatthew G. Knepley           ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2);
1226e735a8a9SMatthew G. Knepley           ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2);
12279c3cf19fSMatthew G. Knepley           ierr2 = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolant,detJ);CHKERRQ(ierr2);
1228e735a8a9SMatthew G. Knepley           CHKERRQ(ierr);
1229e735a8a9SMatthew G. Knepley         }
1230ca3d3a14SMatthew G. Knepley         if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);}
12319c3cf19fSMatthew G. Knepley         ierr = PetscFEInterpolateGradient_Static(fe, &x[fieldOffset], coordDim, invJ, n, q, interpolant);CHKERRQ(ierr);
12329c3cf19fSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1233beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)];
1234beaa55a6SMatthew G. Knepley           if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "    elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]);CHKERRQ(ierr);}
1235beaa55a6SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q];
123640e14135SMatthew G. Knepley         }
123740e14135SMatthew G. Knepley       }
12389c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
12399c3cf19fSMatthew G. Knepley       qc          += Nc;
124040e14135SMatthew G. Knepley     }
124140e14135SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
124240e14135SMatthew G. Knepley     if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);}
124340e14135SMatthew G. Knepley     localDiff += elemDiff;
124440e14135SMatthew G. Knepley   }
12459c3cf19fSMatthew G. Knepley   ierr  = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolant,detJ);CHKERRQ(ierr);
124640e14135SMatthew G. Knepley   ierr  = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
1247b2566f29SBarry Smith   ierr  = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
124840e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
1249cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
1250cb1e1211SMatthew G Knepley }
1251cb1e1211SMatthew G Knepley 
1252c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
125373d901b8SMatthew G. Knepley {
12540f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex*)dm->data)->printL2;
1255ca3d3a14SMatthew G. Knepley   DM               tdm;
125673d901b8SMatthew G. Knepley   PetscSection     section;
125773d901b8SMatthew G. Knepley   PetscQuadrature  quad;
1258ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
125915496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
1260ca3d3a14SMatthew G. Knepley   PetscReal       *coords, *gcoords, *detJ, *J;
126173d901b8SMatthew G. Knepley   PetscReal       *localDiff;
126215496722SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
12639c3cf19fSMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset;
1264ca3d3a14SMatthew G. Knepley   PetscBool        transform;
126573d901b8SMatthew G. Knepley   PetscErrorCode   ierr;
126673d901b8SMatthew G. Knepley 
126773d901b8SMatthew G. Knepley   PetscFunctionBegin;
1268c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
12697318780aSToby Isaac   ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr);
1270e87a4003SBarry Smith   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
127173d901b8SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
127273d901b8SMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
1273ca3d3a14SMatthew G. Knepley   ierr = VecSet(localX, 0.0);CHKERRQ(ierr);
127473d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
127573d901b8SMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
1276ca3d3a14SMatthew G. Knepley   ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr);
1277ca3d3a14SMatthew G. Knepley   ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr);
1278ca3d3a14SMatthew G. Knepley   ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr);
1279ca3d3a14SMatthew G. Knepley   ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr);
128073d901b8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
128115496722SMatthew G. Knepley     PetscObject  obj;
128215496722SMatthew G. Knepley     PetscClassId id;
128373d901b8SMatthew G. Knepley     PetscInt     Nc;
128473d901b8SMatthew G. Knepley 
128544a7f3ddSMatthew G. Knepley     ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr);
128615496722SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
128715496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
128815496722SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
128915496722SMatthew G. Knepley 
12900f2d7e86SMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
12910f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
129215496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
129315496722SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
129415496722SMatthew G. Knepley 
129515496722SMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr);
129615496722SMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
129715496722SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
129873d901b8SMatthew G. Knepley     numComponents += Nc;
129973d901b8SMatthew G. Knepley   }
13009c3cf19fSMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
1301beaa55a6SMatthew G. Knepley   if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents);
1302ca3d3a14SMatthew G. Knepley   ierr = PetscCalloc6(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,coordDim*(Nq+1),&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr);
130373d901b8SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
13049ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
13059ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
130673d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
130773d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
13089c3cf19fSMatthew G. Knepley     PetscInt     qc = 0;
130973d901b8SMatthew G. Knepley 
13107318780aSToby Isaac     ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr);
131173d901b8SMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
131273d901b8SMatthew G. Knepley 
131315496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
131415496722SMatthew G. Knepley       PetscObject  obj;
131515496722SMatthew G. Knepley       PetscClassId id;
131673d901b8SMatthew G. Knepley       void * const ctx = ctxs ? ctxs[field] : NULL;
131715496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
131873d901b8SMatthew G. Knepley 
131915496722SMatthew G. Knepley       PetscReal       elemDiff = 0.0;
132015496722SMatthew G. Knepley 
132144a7f3ddSMatthew G. Knepley       ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr);
132215496722SMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
132315496722SMatthew G. Knepley       if (id == PETSCFE_CLASSID)      {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);}
132415496722SMatthew G. Knepley       else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;}
132515496722SMatthew G. Knepley       else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
132673d901b8SMatthew G. Knepley       if (debug) {
132773d901b8SMatthew G. Knepley         char title[1024];
132873d901b8SMatthew G. Knepley         ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr);
1329ca3d3a14SMatthew G. Knepley         ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr);
133073d901b8SMatthew G. Knepley       }
13317318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
13327318780aSToby Isaac         if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature point %D", detJ, c, q);
1333ca3d3a14SMatthew G. Knepley         if (transform) {gcoords = &coords[coordDim*Nq];
1334*ab6a9622SMatthew G. Knepley                         ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr);}
1335ca3d3a14SMatthew G. Knepley         else           {gcoords = &coords[coordDim*q];}
1336ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, numFields, funcVal, ctx);
1337e735a8a9SMatthew G. Knepley         if (ierr) {
1338e735a8a9SMatthew G. Knepley           PetscErrorCode ierr2;
1339e735a8a9SMatthew G. Knepley           ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2);
1340e735a8a9SMatthew G. Knepley           ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2);
13417318780aSToby Isaac           ierr2 = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2);
1342e735a8a9SMatthew G. Knepley           CHKERRQ(ierr);
1343e735a8a9SMatthew G. Knepley         }
1344ca3d3a14SMatthew G. Knepley         if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);}
134515496722SMatthew G. Knepley         if (id == PETSCFE_CLASSID)      {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
134615496722SMatthew G. Knepley         else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
134715496722SMatthew G. Knepley         else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
134815496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1349beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)];
1350ca3d3a14SMatthew G. Knepley           if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "    elem %d field %d point %g %g %g diff %g\n", c, field, coordDim > 0 ? coords[coordDim*q] : 0., coordDim > 1 ? coords[coordDim*q+1] : 0., coordDim > 2 ? coords[coordDim*q+2] : 0., PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]);CHKERRQ(ierr);}
1351beaa55a6SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q];
135273d901b8SMatthew G. Knepley         }
135373d901b8SMatthew G. Knepley       }
1354beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
13559c3cf19fSMatthew G. Knepley       qc          += Nc;
135673d901b8SMatthew G. Knepley       localDiff[field] += elemDiff;
1357ca3d3a14SMatthew G. Knepley       if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, "  elem %d field %d cum diff %g\n", c, field, localDiff[field]);CHKERRQ(ierr);}
135873d901b8SMatthew G. Knepley     }
135973d901b8SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
136073d901b8SMatthew G. Knepley   }
136173d901b8SMatthew G. Knepley   ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
1362b2566f29SBarry Smith   ierr = MPIU_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr);
136373d901b8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]);
13647318780aSToby Isaac   ierr = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr);
136573d901b8SMatthew G. Knepley   PetscFunctionReturn(0);
136673d901b8SMatthew G. Knepley }
136773d901b8SMatthew G. Knepley 
1368e729f68cSMatthew G. Knepley /*@C
1369e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
1370e729f68cSMatthew G. Knepley 
1371e729f68cSMatthew G. Knepley   Input Parameters:
1372e729f68cSMatthew G. Knepley + dm    - The DM
13730163fd50SMatthew G. Knepley . time  - The time
1374ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation
1375e729f68cSMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each function, or NULL.
1376e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
1377e729f68cSMatthew G. Knepley 
1378e729f68cSMatthew G. Knepley   Output Parameter:
1379e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell
1380e729f68cSMatthew G. Knepley 
1381e729f68cSMatthew G. Knepley   Level: developer
1382e729f68cSMatthew G. Knepley 
1383b698f381SToby Isaac .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff()
1384e729f68cSMatthew G. Knepley @*/
13850163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
1386e729f68cSMatthew G. Knepley {
1387e729f68cSMatthew G. Knepley   PetscSection     section;
1388e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
1389e729f68cSMatthew G. Knepley   Vec              localX;
1390e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
13917318780aSToby Isaac   PetscReal       *coords, *detJ, *J;
1392e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
13939c3cf19fSMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset;
1394e729f68cSMatthew G. Knepley   PetscErrorCode   ierr;
1395e729f68cSMatthew G. Knepley 
1396e729f68cSMatthew G. Knepley   PetscFunctionBegin;
1397e729f68cSMatthew G. Knepley   ierr = VecSet(D, 0.0);CHKERRQ(ierr);
1398e729f68cSMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
13997318780aSToby Isaac   ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr);
1400e87a4003SBarry Smith   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
1401e729f68cSMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
1402e729f68cSMatthew G. Knepley   ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr);
1403bdd6f66aSToby Isaac   ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr);
1404e729f68cSMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
1405e729f68cSMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr);
1406e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
1407e729f68cSMatthew G. Knepley     PetscObject  obj;
1408e729f68cSMatthew G. Knepley     PetscClassId id;
1409e729f68cSMatthew G. Knepley     PetscInt     Nc;
1410e729f68cSMatthew G. Knepley 
141144a7f3ddSMatthew G. Knepley     ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr);
1412e729f68cSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
1413e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1414e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
1415e729f68cSMatthew G. Knepley 
1416e729f68cSMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
1417e729f68cSMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
1418e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1419e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
1420e729f68cSMatthew G. Knepley 
1421e729f68cSMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr);
1422e729f68cSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
1423e729f68cSMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
1424e729f68cSMatthew G. Knepley     numComponents += Nc;
1425e729f68cSMatthew G. Knepley   }
14269c3cf19fSMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
1427beaa55a6SMatthew G. Knepley   if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents);
14287318780aSToby Isaac   ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr);
1429e729f68cSMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
1430e729f68cSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
1431e729f68cSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
1432e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1433e729f68cSMatthew G. Knepley     PetscScalar *x = NULL;
14346f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
14359c3cf19fSMatthew G. Knepley     PetscInt     qc = 0;
1436e729f68cSMatthew G. Knepley 
14377318780aSToby Isaac     ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr);
1438e729f68cSMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
1439e729f68cSMatthew G. Knepley 
1440e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
1441e729f68cSMatthew G. Knepley       PetscObject  obj;
1442e729f68cSMatthew G. Knepley       PetscClassId id;
1443e729f68cSMatthew G. Knepley       void * const ctx = ctxs ? ctxs[field] : NULL;
1444e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1445e729f68cSMatthew G. Knepley 
144644a7f3ddSMatthew G. Knepley       ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr);
1447e729f68cSMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
1448e729f68cSMatthew G. Knepley       if (id == PETSCFE_CLASSID)      {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);}
1449e729f68cSMatthew G. Knepley       else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;}
1450e729f68cSMatthew G. Knepley       else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
145123f34ed2SToby Isaac       if (funcs[field]) {
14527318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
14537f79407eSBarry Smith           if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", (double)detJ[q], c, q);
1454274e8aaeSMatthew G. Knepley           ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], Nc, funcVal, ctx);
1455e735a8a9SMatthew G. Knepley           if (ierr) {
1456e735a8a9SMatthew G. Knepley             PetscErrorCode ierr2;
1457e735a8a9SMatthew G. Knepley             ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2);
14587f79407eSBarry Smith             ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2);
1459e735a8a9SMatthew G. Knepley             ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2);
1460e735a8a9SMatthew G. Knepley             CHKERRQ(ierr);
1461e735a8a9SMatthew G. Knepley           }
1462e729f68cSMatthew G. Knepley           if (id == PETSCFE_CLASSID)      {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
1463e729f68cSMatthew G. Knepley           else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);}
1464e729f68cSMatthew G. Knepley           else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
1465e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1466beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)];
1467beaa55a6SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q];
1468e729f68cSMatthew G. Knepley           }
1469e729f68cSMatthew G. Knepley         }
147023f34ed2SToby Isaac       }
1471beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
14729c3cf19fSMatthew G. Knepley       qc          += Nc;
1473e729f68cSMatthew G. Knepley     }
1474e729f68cSMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr);
147523f34ed2SToby Isaac     ierr = VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES);CHKERRQ(ierr);
1476e729f68cSMatthew G. Knepley   }
14777318780aSToby Isaac   ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr);
1478e729f68cSMatthew G. Knepley   ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr);
1479e729f68cSMatthew G. Knepley   ierr = VecSqrtAbs(D);CHKERRQ(ierr);
1480e729f68cSMatthew G. Knepley   PetscFunctionReturn(0);
1481e729f68cSMatthew G. Knepley }
1482e729f68cSMatthew G. Knepley 
14831555c271SMatthew G. Knepley /*@C
14841555c271SMatthew G. Knepley   DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1, and stores it in a Vec.
14851555c271SMatthew G. Knepley 
14861555c271SMatthew G. Knepley   Input Parameters:
14871555c271SMatthew G. Knepley + dm - The DM
14881555c271SMatthew G. Knepley - LocX  - The coefficient vector u_h
14891555c271SMatthew G. Knepley 
14901555c271SMatthew G. Knepley   Output Parameter:
14911555c271SMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the gradient
14921555c271SMatthew G. Knepley 
149395452b02SPatrick Sanan   Notes:
149495452b02SPatrick Sanan     Add citation to (Clement, 1975) and definition of the interpolant
14951555c271SMatthew G. Knepley   \nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume
14961555c271SMatthew G. Knepley 
14971555c271SMatthew G. Knepley   Level: developer
14981555c271SMatthew G. Knepley 
14991555c271SMatthew G. Knepley .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff()
15001555c271SMatthew G. Knepley @*/
15011555c271SMatthew G. Knepley PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC)
15021555c271SMatthew G. Knepley {
1503db1066baSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *) dm->data;
1504db1066baSMatthew G. Knepley   PetscInt         debug = mesh->printFEM;
15051555c271SMatthew G. Knepley   DM               dmC;
15061555c271SMatthew G. Knepley   PetscSection     section;
15071555c271SMatthew G. Knepley   PetscQuadrature  quad;
15081555c271SMatthew G. Knepley   PetscScalar     *interpolant, *gradsum;
15091555c271SMatthew G. Knepley   PetscReal       *coords, *detJ, *J, *invJ;
15101555c271SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
15111555c271SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, cEndInterior, vStart, vEnd, v, field, fieldOffset;
15121555c271SMatthew G. Knepley   PetscErrorCode   ierr;
15131555c271SMatthew G. Knepley 
15141555c271SMatthew G. Knepley   PetscFunctionBegin;
15151555c271SMatthew G. Knepley   ierr = VecGetDM(locC, &dmC);CHKERRQ(ierr);
15161555c271SMatthew G. Knepley   ierr = VecSet(locC, 0.0);CHKERRQ(ierr);
15171555c271SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
15181555c271SMatthew G. Knepley   ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr);
1519e87a4003SBarry Smith   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
15201555c271SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr);
15211555c271SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
15221555c271SMatthew G. Knepley     PetscObject  obj;
15231555c271SMatthew G. Knepley     PetscClassId id;
15241555c271SMatthew G. Knepley     PetscInt     Nc;
15251555c271SMatthew G. Knepley 
152644a7f3ddSMatthew G. Knepley     ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr);
15271555c271SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
15281555c271SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
15291555c271SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
15301555c271SMatthew G. Knepley 
15311555c271SMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr);
15321555c271SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
15331555c271SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
15341555c271SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
15351555c271SMatthew G. Knepley 
15361555c271SMatthew G. Knepley       ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr);
15371555c271SMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
15381555c271SMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
15391555c271SMatthew G. Knepley     numComponents += Nc;
15401555c271SMatthew G. Knepley   }
15411555c271SMatthew G. Knepley   ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr);
15421555c271SMatthew G. Knepley   if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents);
15431555c271SMatthew G. Knepley   ierr = PetscMalloc6(coordDim*numComponents*2,&gradsum,coordDim*numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J,coordDim*coordDim*Nq,&invJ);CHKERRQ(ierr);
15441555c271SMatthew G. Knepley   ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr);
15451555c271SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
15461555c271SMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
15471555c271SMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
15481555c271SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
15491555c271SMatthew G. Knepley     PetscScalar volsum = 0.0;
15501555c271SMatthew G. Knepley     PetscInt   *star = NULL;
15511555c271SMatthew G. Knepley     PetscInt    starSize, st, d, fc;
15521555c271SMatthew G. Knepley 
15531555c271SMatthew G. Knepley     ierr = PetscMemzero(gradsum, coordDim*numComponents * sizeof(PetscScalar));CHKERRQ(ierr);
15541555c271SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr);
15551555c271SMatthew G. Knepley     for (st = 0; st < starSize*2; st += 2) {
15561555c271SMatthew G. Knepley       const PetscInt cell = star[st];
15571555c271SMatthew G. Knepley       PetscScalar   *grad = &gradsum[coordDim*numComponents];
15581555c271SMatthew G. Knepley       PetscScalar   *x    = NULL;
15591555c271SMatthew G. Knepley       PetscReal      vol  = 0.0;
15601555c271SMatthew G. Knepley 
15611555c271SMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
15621555c271SMatthew G. Knepley       ierr = DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, J, invJ, detJ);CHKERRQ(ierr);
15631555c271SMatthew G. Knepley       ierr = DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr);
15641555c271SMatthew G. Knepley       for (field = 0, fieldOffset = 0; field < numFields; ++field) {
15651555c271SMatthew G. Knepley         PetscObject  obj;
15661555c271SMatthew G. Knepley         PetscClassId id;
15671555c271SMatthew G. Knepley         PetscInt     Nb, Nc, q, qc = 0;
15681555c271SMatthew G. Knepley 
15691555c271SMatthew G. Knepley         ierr = PetscMemzero(grad, coordDim*numComponents * sizeof(PetscScalar));CHKERRQ(ierr);
157044a7f3ddSMatthew G. Knepley         ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr);
15711555c271SMatthew G. Knepley         ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
15721555c271SMatthew G. Knepley         if (id == PETSCFE_CLASSID)      {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);}
15731555c271SMatthew G. Knepley         else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;}
15741555c271SMatthew G. Knepley         else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
15751555c271SMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
15761555c271SMatthew G. Knepley           if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", (double)detJ[q], cell, q);
15771555c271SMatthew G. Knepley           if (ierr) {
15781555c271SMatthew G. Knepley             PetscErrorCode ierr2;
15791555c271SMatthew G. Knepley             ierr2 = DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr2);
15801555c271SMatthew G. Knepley             ierr2 = DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr2);
15811555c271SMatthew G. Knepley             ierr2 = PetscFree4(interpolant,coords,detJ,J);CHKERRQ(ierr2);
15821555c271SMatthew G. Knepley             CHKERRQ(ierr);
15831555c271SMatthew G. Knepley           }
15841555c271SMatthew G. Knepley           if (id == PETSCFE_CLASSID)      {ierr = PetscFEInterpolateGradient_Static((PetscFE) obj, &x[fieldOffset], coordDim, invJ, NULL, q, interpolant);CHKERRQ(ierr);}
15851555c271SMatthew G. Knepley           else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field);
15861555c271SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
15871555c271SMatthew G. Knepley             const PetscReal wt = quadWeights[q*qNc+qc+fc];
15881555c271SMatthew G. Knepley 
15891555c271SMatthew G. Knepley             for (d = 0; d < coordDim; ++d) grad[fc*coordDim+d] += interpolant[fc*dim+d]*wt*detJ[q];
15901555c271SMatthew G. Knepley           }
15911555c271SMatthew G. Knepley           vol += quadWeights[q*qNc]*detJ[q];
15921555c271SMatthew G. Knepley         }
15931555c271SMatthew G. Knepley         fieldOffset += Nb;
15941555c271SMatthew G. Knepley         qc          += Nc;
15951555c271SMatthew G. Knepley       }
15961555c271SMatthew G. Knepley       ierr = DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr);
1597f8527842SMatthew G. Knepley       for (fc = 0; fc < numComponents; ++fc) {
1598f8527842SMatthew G. Knepley         for (d = 0; d < coordDim; ++d) {
1599f8527842SMatthew G. Knepley           gradsum[fc*coordDim+d] += grad[fc*coordDim+d];
1600f8527842SMatthew G. Knepley         }
1601f8527842SMatthew G. Knepley       }
1602f8527842SMatthew G. Knepley       volsum += vol;
1603db1066baSMatthew G. Knepley       if (debug) {
16046d20ae03SJed Brown         ierr = PetscPrintf(PETSC_COMM_SELF, "Cell %D gradient: [", cell);CHKERRQ(ierr);
16051555c271SMatthew G. Knepley         for (fc = 0; fc < numComponents; ++fc) {
16061555c271SMatthew G. Knepley           for (d = 0; d < coordDim; ++d) {
16071555c271SMatthew G. Knepley             if (fc || d > 0) {ierr = PetscPrintf(PETSC_COMM_SELF, ", ");CHKERRQ(ierr);}
16086d20ae03SJed Brown             ierr = PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc*coordDim+d]));CHKERRQ(ierr);
16091555c271SMatthew G. Knepley           }
16101555c271SMatthew G. Knepley         }
16111555c271SMatthew G. Knepley         ierr = PetscPrintf(PETSC_COMM_SELF, "]\n");CHKERRQ(ierr);
1612db1066baSMatthew G. Knepley       }
16131555c271SMatthew G. Knepley     }
16141555c271SMatthew G. Knepley     for (fc = 0; fc < numComponents; ++fc) {
16151555c271SMatthew G. Knepley       for (d = 0; d < coordDim; ++d) gradsum[fc*coordDim+d] /= volsum;
16161555c271SMatthew G. Knepley     }
16171555c271SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr);
16181555c271SMatthew G. Knepley     ierr = DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES);CHKERRQ(ierr);
16191555c271SMatthew G. Knepley   }
16201555c271SMatthew G. Knepley   ierr = PetscFree6(gradsum,interpolant,coords,detJ,J,invJ);CHKERRQ(ierr);
16211555c271SMatthew G. Knepley   PetscFunctionReturn(0);
16221555c271SMatthew G. Knepley }
16231555c271SMatthew G. Knepley 
1624338f77d5SMatthew G. Knepley static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user)
162573d901b8SMatthew G. Knepley {
1626338f77d5SMatthew G. Knepley   DM                 dmAux = NULL;
162761aaff12SToby Isaac   PetscDS            prob,    probAux = NULL;
162873d901b8SMatthew G. Knepley   PetscSection       section, sectionAux;
1629338f77d5SMatthew G. Knepley   Vec                locX,    locA;
1630c330f8ffSToby Isaac   PetscInt           dim, numCells = cEnd - cStart, c, f;
1631c330f8ffSToby Isaac   PetscBool          useFVM = PETSC_FALSE;
1632338f77d5SMatthew G. Knepley   /* DS */
1633338f77d5SMatthew G. Knepley   PetscInt           Nf,    totDim,    *uOff, *uOff_x, numConstants;
1634338f77d5SMatthew G. Knepley   PetscInt           NfAux, totDimAux, *aOff;
1635338f77d5SMatthew G. Knepley   PetscScalar       *u, *a;
1636338f77d5SMatthew G. Knepley   const PetscScalar *constants;
1637338f77d5SMatthew G. Knepley   /* Geometry */
1638c330f8ffSToby Isaac   PetscFEGeom       *cgeomFEM;
1639338f77d5SMatthew G. Knepley   DM                 dmGrad;
1640c330f8ffSToby Isaac   PetscQuadrature    affineQuad = NULL;
1641338f77d5SMatthew G. Knepley   Vec                cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
1642b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
1643338f77d5SMatthew G. Knepley   const PetscScalar *lgrad;
1644b7260050SToby Isaac   PetscInt           maxDegree;
1645c330f8ffSToby Isaac   DMField            coordField;
1646c330f8ffSToby Isaac   IS                 cellIS;
164773d901b8SMatthew G. Knepley   PetscErrorCode     ierr;
164873d901b8SMatthew G. Knepley 
164973d901b8SMatthew G. Knepley   PetscFunctionBegin;
1650338f77d5SMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
1651c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
1652e87a4003SBarry Smith   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
165373d901b8SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr);
1654338f77d5SMatthew G. Knepley   /* Determine which discretizations we have */
1655b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
1656b5a3613cSMatthew G. Knepley     PetscObject  obj;
1657b5a3613cSMatthew G. Knepley     PetscClassId id;
1658b5a3613cSMatthew G. Knepley 
1659b5a3613cSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
1660b5a3613cSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
1661338f77d5SMatthew G. Knepley     if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE;
1662338f77d5SMatthew G. Knepley   }
1663338f77d5SMatthew G. Knepley   /* Get local solution with boundary values */
1664338f77d5SMatthew G. Knepley   ierr = DMGetLocalVector(dm, &locX);CHKERRQ(ierr);
1665338f77d5SMatthew G. Knepley   ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr);
1666338f77d5SMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr);
1667338f77d5SMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr);
1668338f77d5SMatthew G. Knepley   /* Read DS information */
1669338f77d5SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
1670338f77d5SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr);
1671338f77d5SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr);
1672c330f8ffSToby Isaac   ierr = ISCreateStride(PETSC_COMM_SELF,numCells,cStart,1,&cellIS);CHKERRQ(ierr);
1673338f77d5SMatthew G. Knepley   ierr = PetscDSGetConstants(prob, &numConstants, &constants);CHKERRQ(ierr);
1674338f77d5SMatthew G. Knepley   /* Read Auxiliary DS information */
1675338f77d5SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr);
1676338f77d5SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr);
1677338f77d5SMatthew G. Knepley   if (dmAux) {
1678338f77d5SMatthew G. Knepley     ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr);
1679338f77d5SMatthew G. Knepley     ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr);
1680e87a4003SBarry Smith     ierr = DMGetSection(dmAux, &sectionAux);CHKERRQ(ierr);
1681338f77d5SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);
1682338f77d5SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr);
1683338f77d5SMatthew G. Knepley   }
1684338f77d5SMatthew G. Knepley   /* Allocate data  arrays */
1685338f77d5SMatthew G. Knepley   ierr = PetscCalloc1(numCells*totDim, &u);CHKERRQ(ierr);
1686338f77d5SMatthew G. Knepley   if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);}
1687338f77d5SMatthew G. Knepley   /* Read out geometry */
1688c330f8ffSToby Isaac   ierr = DMGetCoordinateField(dm,&coordField);CHKERRQ(ierr);
1689b7260050SToby Isaac   ierr = DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree);CHKERRQ(ierr);
1690b7260050SToby Isaac   if (maxDegree <= 1) {
1691c330f8ffSToby Isaac     ierr = DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad);CHKERRQ(ierr);
1692c330f8ffSToby Isaac     if (affineQuad) {
1693c330f8ffSToby Isaac       ierr = DMFieldCreateFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&cgeomFEM);CHKERRQ(ierr);
1694338f77d5SMatthew G. Knepley     }
1695b5a3613cSMatthew G. Knepley   }
1696b5a3613cSMatthew G. Knepley   if (useFVM) {
1697338f77d5SMatthew G. Knepley     PetscFV   fv = NULL;
1698b5a3613cSMatthew G. Knepley     Vec       grad;
1699b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
1700b5a3613cSMatthew G. Knepley     PetscBool compGrad;
1701b5a3613cSMatthew G. Knepley 
1702338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
1703338f77d5SMatthew G. Knepley       PetscObject  obj;
1704338f77d5SMatthew G. Knepley       PetscClassId id;
1705338f77d5SMatthew G. Knepley 
1706338f77d5SMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
1707338f77d5SMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
1708338f77d5SMatthew G. Knepley       if (id == PETSCFV_CLASSID) {fv = (PetscFV) obj; break;}
1709338f77d5SMatthew G. Knepley     }
1710338f77d5SMatthew G. Knepley     ierr = PetscFVGetComputeGradients(fv, &compGrad);CHKERRQ(ierr);
1711338f77d5SMatthew G. Knepley     ierr = PetscFVSetComputeGradients(fv, PETSC_TRUE);CHKERRQ(ierr);
1712b5a3613cSMatthew G. Knepley     ierr = DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM);CHKERRQ(ierr);
1713338f77d5SMatthew G. Knepley     ierr = DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad);CHKERRQ(ierr);
1714338f77d5SMatthew G. Knepley     ierr = PetscFVSetComputeGradients(fv, compGrad);CHKERRQ(ierr);
1715b5a3613cSMatthew G. Knepley     ierr = VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr);
1716b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
1717b5a3613cSMatthew G. Knepley     ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr);
1718b5a3613cSMatthew G. Knepley     ierr = DMGetGlobalVector(dmGrad, &grad);CHKERRQ(ierr);
1719338f77d5SMatthew G. Knepley     ierr = DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad);CHKERRQ(ierr);
1720b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
1721b5a3613cSMatthew G. Knepley     ierr = DMGetLocalVector(dmGrad, &locGrad);CHKERRQ(ierr);
1722b5a3613cSMatthew G. Knepley     ierr = DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr);
1723b5a3613cSMatthew G. Knepley     ierr = DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr);
1724b5a3613cSMatthew G. Knepley     ierr = DMRestoreGlobalVector(dmGrad, &grad);CHKERRQ(ierr);
1725b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
1726338f77d5SMatthew G. Knepley     ierr = DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad);CHKERRQ(ierr);
1727b5a3613cSMatthew G. Knepley     ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr);
1728b5a3613cSMatthew G. Knepley   }
1729338f77d5SMatthew G. Knepley   /* Read out data from inputs */
173073d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
173173d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
173273d901b8SMatthew G. Knepley     PetscInt     i;
173373d901b8SMatthew G. Knepley 
1734338f77d5SMatthew G. Knepley     ierr = DMPlexVecGetClosure(dm, section, locX, c, NULL, &x);CHKERRQ(ierr);
17350f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i];
1736338f77d5SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x);CHKERRQ(ierr);
173773d901b8SMatthew G. Knepley     if (dmAux) {
1738338f77d5SMatthew G. Knepley       ierr = DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x);CHKERRQ(ierr);
17390f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i];
1740338f77d5SMatthew G. Knepley       ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x);CHKERRQ(ierr);
174173d901b8SMatthew G. Knepley     }
174273d901b8SMatthew G. Knepley   }
1743338f77d5SMatthew G. Knepley   /* Do integration for each field */
174473d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
1745c1f031eeSMatthew G. Knepley     PetscObject  obj;
1746c1f031eeSMatthew G. Knepley     PetscClassId id;
1747c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
174873d901b8SMatthew G. Knepley 
1749c1f031eeSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
1750c1f031eeSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
1751c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1752c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE) obj;
1753c1f031eeSMatthew G. Knepley       PetscQuadrature q;
1754c330f8ffSToby Isaac       PetscFEGeom     *chunkGeom = NULL;
1755c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
1756c1f031eeSMatthew G. Knepley 
17570f2d7e86SMatthew G. Knepley       ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr);
1758c1f031eeSMatthew G. Knepley       ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr);
17599c3cf19fSMatthew G. Knepley       ierr = PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr);
1760c1f031eeSMatthew G. Knepley       ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr);
1761c1f031eeSMatthew G. Knepley       blockSize = Nb*Nq;
176273d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
17630f2d7e86SMatthew G. Knepley       ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr);
176473d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches*batchSize);
176573d901b8SMatthew G. Knepley       Ne        = numChunks*numBatches*batchSize;
176673d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches*batchSize);
176773d901b8SMatthew G. Knepley       offset    = numCells - Nr;
1768c330f8ffSToby Isaac       if (!affineQuad) {
1769c330f8ffSToby Isaac         ierr = DMFieldCreateFEGeom(coordField,cellIS,q,PETSC_FALSE,&cgeomFEM);CHKERRQ(ierr);
1770c330f8ffSToby Isaac       }
1771c330f8ffSToby Isaac       ierr = PetscFEGeomGetChunk(cgeomFEM,0,offset,&chunkGeom);CHKERRQ(ierr);
1772c330f8ffSToby Isaac       ierr = PetscFEIntegrate(fe, prob, f, Ne, chunkGeom, u, probAux, a, cintegral);CHKERRQ(ierr);
1773c330f8ffSToby Isaac       ierr = PetscFEGeomGetChunk(cgeomFEM,offset,numCells,&chunkGeom);CHKERRQ(ierr);
1774c330f8ffSToby Isaac       ierr = PetscFEIntegrate(fe, prob, f, Nr, chunkGeom, &u[offset*totDim], probAux, &a[offset*totDimAux], &cintegral[offset*Nf]);CHKERRQ(ierr);
1775c330f8ffSToby Isaac       ierr = PetscFEGeomRestoreChunk(cgeomFEM,offset,numCells,&chunkGeom);CHKERRQ(ierr);
1776c330f8ffSToby Isaac       if (!affineQuad) {
1777c330f8ffSToby Isaac         ierr = PetscFEGeomDestroy(&cgeomFEM);CHKERRQ(ierr);
1778c330f8ffSToby Isaac       }
1779c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1780c1f031eeSMatthew G. Knepley       PetscInt       foff;
1781420e96edSMatthew G. Knepley       PetscPointFunc obj_func;
1782b69edc29SMatthew G. Knepley       PetscScalar    lint;
1783c1f031eeSMatthew G. Knepley 
1784c1f031eeSMatthew G. Knepley       ierr = PetscDSGetObjective(prob, f, &obj_func);CHKERRQ(ierr);
1785c1f031eeSMatthew G. Knepley       ierr = PetscDSGetFieldOffset(prob, f, &foff);CHKERRQ(ierr);
1786c1f031eeSMatthew G. Knepley       if (obj_func) {
1787c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
1788b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
1789b5a3613cSMatthew G. Knepley 
1790b5a3613cSMatthew G. Knepley           ierr = DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x);CHKERRQ(ierr);
1791338f77d5SMatthew G. Knepley           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, &a[totDimAux*c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint);
1792338f77d5SMatthew G. Knepley           cintegral[c*Nf+f] += PetscRealPart(lint)*cgeomFVM[c].volume;
179373d901b8SMatthew G. Knepley         }
1794c1f031eeSMatthew G. Knepley       }
1795c1f031eeSMatthew G. Knepley     } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f);
1796c1f031eeSMatthew G. Knepley   }
1797338f77d5SMatthew G. Knepley   /* Cleanup data arrays */
1798b5a3613cSMatthew G. Knepley   if (useFVM) {
1799b5a3613cSMatthew G. Knepley     ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr);
1800b5a3613cSMatthew G. Knepley     ierr = VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr);
1801b5a3613cSMatthew G. Knepley     ierr = DMRestoreLocalVector(dmGrad, &locGrad);CHKERRQ(ierr);
1802b5a3613cSMatthew G. Knepley     ierr = VecDestroy(&faceGeometryFVM);CHKERRQ(ierr);
1803b5a3613cSMatthew G. Knepley     ierr = VecDestroy(&cellGeometryFVM);CHKERRQ(ierr);
1804b5a3613cSMatthew G. Knepley     ierr = DMDestroy(&dmGrad);CHKERRQ(ierr);
1805b5a3613cSMatthew G. Knepley   }
180673d901b8SMatthew G. Knepley   if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);}
1807338f77d5SMatthew G. Knepley   ierr = PetscFree(u);CHKERRQ(ierr);
1808338f77d5SMatthew G. Knepley   /* Cleanup */
1809f99c8401SToby Isaac   if (affineQuad) {
1810f99c8401SToby Isaac     ierr = PetscFEGeomDestroy(&cgeomFEM);CHKERRQ(ierr);
1811f99c8401SToby Isaac   }
1812f99c8401SToby Isaac   ierr = PetscQuadratureDestroy(&affineQuad);CHKERRQ(ierr);
1813c330f8ffSToby Isaac   ierr = ISDestroy(&cellIS);CHKERRQ(ierr);
1814338f77d5SMatthew G. Knepley   ierr = DMRestoreLocalVector(dm, &locX);CHKERRQ(ierr);
1815338f77d5SMatthew G. Knepley   PetscFunctionReturn(0);
1816338f77d5SMatthew G. Knepley }
1817338f77d5SMatthew G. Knepley 
1818338f77d5SMatthew G. Knepley /*@
1819338f77d5SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user
1820338f77d5SMatthew G. Knepley 
1821338f77d5SMatthew G. Knepley   Input Parameters:
1822338f77d5SMatthew G. Knepley + dm - The mesh
1823338f77d5SMatthew G. Knepley . X  - Global input vector
1824338f77d5SMatthew G. Knepley - user - The user context
1825338f77d5SMatthew G. Knepley 
1826338f77d5SMatthew G. Knepley   Output Parameter:
1827338f77d5SMatthew G. Knepley . integral - Integral for each field
1828338f77d5SMatthew G. Knepley 
1829338f77d5SMatthew G. Knepley   Level: developer
1830338f77d5SMatthew G. Knepley 
1831338f77d5SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM()
1832338f77d5SMatthew G. Knepley @*/
1833b8feb594SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user)
1834338f77d5SMatthew G. Knepley {
1835338f77d5SMatthew G. Knepley   DM_Plex       *mesh = (DM_Plex *) dm->data;
1836b8feb594SMatthew G. Knepley   PetscScalar   *cintegral, *lintegral;
1837338f77d5SMatthew G. Knepley   PetscInt       Nf, f, cellHeight, cStart, cEnd, cEndInterior[4], cell;
1838338f77d5SMatthew G. Knepley   PetscErrorCode ierr;
1839338f77d5SMatthew G. Knepley 
1840338f77d5SMatthew G. Knepley   PetscFunctionBegin;
1841338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1842338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
1843338f77d5SMatthew G. Knepley   PetscValidPointer(integral, 3);
1844338f77d5SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);
1845338f77d5SMatthew G. Knepley   ierr = DMGetNumFields(dm, &Nf);CHKERRQ(ierr);
1846338f77d5SMatthew G. Knepley   ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr);
1847338f77d5SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr);
1848338f77d5SMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior[0], &cEndInterior[1], &cEndInterior[2], &cEndInterior[3]);CHKERRQ(ierr);
1849338f77d5SMatthew G. Knepley   cEnd = cEndInterior[cellHeight] < 0 ? cEnd : cEndInterior[cellHeight];
1850338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
1851338f77d5SMatthew G. Knepley   ierr = PetscCalloc2(Nf, &lintegral, (cEnd-cStart)*Nf, &cintegral);CHKERRQ(ierr);
1852338f77d5SMatthew G. Knepley   ierr = DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user);CHKERRQ(ierr);
1853338f77d5SMatthew G. Knepley   /* Sum up values */
1854338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
1855338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
1856338f77d5SMatthew G. Knepley 
1857338f77d5SMatthew G. Knepley     if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf]);CHKERRQ(ierr);}
1858b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c*Nf+f];
1859338f77d5SMatthew G. Knepley   }
1860b8feb594SMatthew G. Knepley   ierr = MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject) dm));CHKERRQ(ierr);
186173d901b8SMatthew G. Knepley   if (mesh->printFEM) {
1862338f77d5SMatthew G. Knepley     ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Integral:");CHKERRQ(ierr);
1863b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", (double) PetscRealPart(integral[f]));CHKERRQ(ierr);}
186473d901b8SMatthew G. Knepley     ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr);
186573d901b8SMatthew G. Knepley   }
1866338f77d5SMatthew G. Knepley   ierr = PetscFree2(lintegral, cintegral);CHKERRQ(ierr);
1867338f77d5SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);
1868338f77d5SMatthew G. Knepley   PetscFunctionReturn(0);
1869338f77d5SMatthew G. Knepley }
1870338f77d5SMatthew G. Knepley 
1871338f77d5SMatthew G. Knepley /*@
1872338f77d5SMatthew G. Knepley   DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user
1873338f77d5SMatthew G. Knepley 
1874338f77d5SMatthew G. Knepley   Input Parameters:
1875338f77d5SMatthew G. Knepley + dm - The mesh
1876338f77d5SMatthew G. Knepley . X  - Global input vector
1877338f77d5SMatthew G. Knepley - user - The user context
1878338f77d5SMatthew G. Knepley 
1879338f77d5SMatthew G. Knepley   Output Parameter:
1880338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field
1881338f77d5SMatthew G. Knepley 
1882338f77d5SMatthew G. Knepley   Level: developer
1883338f77d5SMatthew G. Knepley 
1884338f77d5SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM()
1885338f77d5SMatthew G. Knepley @*/
1886338f77d5SMatthew G. Knepley PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user)
1887338f77d5SMatthew G. Knepley {
1888338f77d5SMatthew G. Knepley   DM_Plex       *mesh = (DM_Plex *) dm->data;
1889338f77d5SMatthew G. Knepley   DM             dmF;
1890338f77d5SMatthew G. Knepley   PetscSection   sectionF;
1891338f77d5SMatthew G. Knepley   PetscScalar   *cintegral, *af;
1892338f77d5SMatthew G. Knepley   PetscInt       Nf, f, cellHeight, cStart, cEnd, cEndInterior[4], cell;
1893338f77d5SMatthew G. Knepley   PetscErrorCode ierr;
1894338f77d5SMatthew G. Knepley 
1895338f77d5SMatthew G. Knepley   PetscFunctionBegin;
1896338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1897338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
1898338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(F, VEC_CLASSID, 3);
1899338f77d5SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);
1900338f77d5SMatthew G. Knepley   ierr = DMGetNumFields(dm, &Nf);CHKERRQ(ierr);
1901338f77d5SMatthew G. Knepley   ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr);
1902338f77d5SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr);
1903338f77d5SMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dm, &cEndInterior[0], &cEndInterior[1], &cEndInterior[2], &cEndInterior[3]);CHKERRQ(ierr);
1904338f77d5SMatthew G. Knepley   cEnd = cEndInterior[cellHeight] < 0 ? cEnd : cEndInterior[cellHeight];
1905338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
1906338f77d5SMatthew G. Knepley   ierr = PetscCalloc1((cEnd-cStart)*Nf, &cintegral);CHKERRQ(ierr);
1907338f77d5SMatthew G. Knepley   ierr = DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user);CHKERRQ(ierr);
1908338f77d5SMatthew G. Knepley   /* Put values in F*/
1909338f77d5SMatthew G. Knepley   ierr = VecGetDM(F, &dmF);CHKERRQ(ierr);
1910e87a4003SBarry Smith   ierr = DMGetSection(dmF, &sectionF);CHKERRQ(ierr);
1911338f77d5SMatthew G. Knepley   ierr = VecGetArray(F, &af);CHKERRQ(ierr);
1912338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
1913338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
1914338f77d5SMatthew G. Knepley     PetscInt       dof, off;
1915338f77d5SMatthew G. Knepley 
1916338f77d5SMatthew G. Knepley     if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf]);CHKERRQ(ierr);}
1917338f77d5SMatthew G. Knepley     ierr = PetscSectionGetDof(sectionF, cell, &dof);CHKERRQ(ierr);
1918338f77d5SMatthew G. Knepley     ierr = PetscSectionGetOffset(sectionF, cell, &off);CHKERRQ(ierr);
1919338f77d5SMatthew G. Knepley     if (dof != Nf) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %D != %D", dof, Nf);
1920338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) af[off+f] = cintegral[c*Nf+f];
1921338f77d5SMatthew G. Knepley   }
1922338f77d5SMatthew G. Knepley   ierr = VecRestoreArray(F, &af);CHKERRQ(ierr);
1923338f77d5SMatthew G. Knepley   ierr = PetscFree(cintegral);CHKERRQ(ierr);
1924c1f031eeSMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);
192573d901b8SMatthew G. Knepley   PetscFunctionReturn(0);
192673d901b8SMatthew G. Knepley }
192773d901b8SMatthew G. Knepley 
19289b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS,
19299b6f715bSMatthew G. Knepley                                                        void (*func)(PetscInt, PetscInt, PetscInt,
193064c72086SMatthew G. Knepley                                                                     const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
193164c72086SMatthew G. Knepley                                                                     const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
193264c72086SMatthew G. Knepley                                                                     PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]),
193364c72086SMatthew G. Knepley                                                        PetscScalar *fintegral, void *user)
193464c72086SMatthew G. Knepley {
19359b6f715bSMatthew G. Knepley   DM                 plex = NULL, plexA = NULL;
19369b6f715bSMatthew G. Knepley   PetscDS            prob, probAux = NULL;
19379b6f715bSMatthew G. Knepley   PetscSection       section, sectionAux = NULL;
19389b6f715bSMatthew G. Knepley   Vec                locA = NULL;
19399b6f715bSMatthew G. Knepley   DMField            coordField;
19409b6f715bSMatthew G. Knepley   PetscInt           Nf,        totDim,        *uOff, *uOff_x;
19419b6f715bSMatthew G. Knepley   PetscInt           NfAux = 0, totDimAux = 0, *aOff = NULL;
19429b6f715bSMatthew G. Knepley   PetscScalar       *u, *a = NULL;
194364c72086SMatthew G. Knepley   const PetscScalar *constants;
19449b6f715bSMatthew G. Knepley   PetscInt           numConstants, f;
194564c72086SMatthew G. Knepley   PetscErrorCode     ierr;
194664c72086SMatthew G. Knepley 
194764c72086SMatthew G. Knepley   PetscFunctionBegin;
19489b6f715bSMatthew G. Knepley   ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr);
19499b6f715bSMatthew G. Knepley   ierr = DMConvert(dm, DMPLEX, &plex);CHKERRQ(ierr);
195064c72086SMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
195164c72086SMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
195264c72086SMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr);
195364c72086SMatthew G. Knepley   /* Determine which discretizations we have */
19549b6f715bSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
195564c72086SMatthew G. Knepley     PetscObject  obj;
195664c72086SMatthew G. Knepley     PetscClassId id;
195764c72086SMatthew G. Knepley 
19589b6f715bSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
195964c72086SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
19609b6f715bSMatthew G. Knepley     if (id == PETSCFV_CLASSID) SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Not supported for FVM (field %D)", f);
196164c72086SMatthew G. Knepley   }
196264c72086SMatthew G. Knepley   /* Read DS information */
196364c72086SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
196464c72086SMatthew G. Knepley   ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr);
196564c72086SMatthew G. Knepley   ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr);
196664c72086SMatthew G. Knepley   ierr = PetscDSGetConstants(prob, &numConstants, &constants);CHKERRQ(ierr);
196764c72086SMatthew G. Knepley   /* Read Auxiliary DS information */
196864c72086SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr);
19699b6f715bSMatthew G. Knepley   if (locA) {
19709b6f715bSMatthew G. Knepley     DM dmAux;
19719b6f715bSMatthew G. Knepley 
19729b6f715bSMatthew G. Knepley     ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr);
19739b6f715bSMatthew G. Knepley     ierr = DMConvert(dmAux, DMPLEX, &plexA);CHKERRQ(ierr);
197464c72086SMatthew G. Knepley     ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr);
197564c72086SMatthew G. Knepley     ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr);
197664c72086SMatthew G. Knepley     ierr = DMGetDefaultSection(dmAux, &sectionAux);CHKERRQ(ierr);
197764c72086SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);
197864c72086SMatthew G. Knepley     ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr);
197964c72086SMatthew G. Knepley   }
19809b6f715bSMatthew G. Knepley   /* Integrate over points */
19819b6f715bSMatthew G. Knepley   {
19829b6f715bSMatthew G. Knepley     PetscFEGeom    *fgeom, *chunkGeom = NULL;
1983b7260050SToby Isaac     PetscInt        maxDegree;
19849b6f715bSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
19859b6f715bSMatthew G. Knepley     const PetscInt *points;
19869b6f715bSMatthew G. Knepley     PetscInt        numFaces, face, Nq, field;
19879b6f715bSMatthew G. Knepley     PetscInt        numChunks, chunkSize, chunk, Nr, offset;
198864c72086SMatthew G. Knepley 
19899b6f715bSMatthew G. Knepley     ierr = ISGetLocalSize(pointIS, &numFaces);CHKERRQ(ierr);
19909b6f715bSMatthew G. Knepley     ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr);
19919b6f715bSMatthew G. Knepley     ierr = PetscCalloc2(numFaces*totDim, &u, locA ? numFaces*totDimAux : 0, &a);CHKERRQ(ierr);
1992b7260050SToby Isaac     ierr = DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree);CHKERRQ(ierr);
199364c72086SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
199464c72086SMatthew G. Knepley       PetscFE fe;
199564c72086SMatthew G. Knepley 
199664c72086SMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fe);CHKERRQ(ierr);
1997b7260050SToby Isaac       if (maxDegree <= 1) {ierr = DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom);CHKERRQ(ierr);}
19989b6f715bSMatthew G. Knepley       if (!qGeom) {
19999b6f715bSMatthew G. Knepley         ierr = PetscFEGetFaceQuadrature(fe, &qGeom);CHKERRQ(ierr);
20009b6f715bSMatthew G. Knepley         ierr = PetscObjectReference((PetscObject) qGeom);CHKERRQ(ierr);
20019b6f715bSMatthew G. Knepley       }
20029b6f715bSMatthew G. Knepley       ierr = PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr);
20039b6f715bSMatthew G. Knepley       ierr = DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom);CHKERRQ(ierr);
20049b6f715bSMatthew G. Knepley       for (face = 0; face < numFaces; ++face) {
20059b6f715bSMatthew G. Knepley         const PetscInt point = points[face], *support, *cone;
20069b6f715bSMatthew G. Knepley         PetscScalar    *x    = NULL;
20079b6f715bSMatthew G. Knepley         PetscInt       i, coneSize, faceLoc;
20089b6f715bSMatthew G. Knepley 
20099b6f715bSMatthew G. Knepley         ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr);
20109b6f715bSMatthew G. Knepley         ierr = DMPlexGetConeSize(dm, support[0], &coneSize);CHKERRQ(ierr);
20119b6f715bSMatthew G. Knepley         ierr = DMPlexGetCone(dm, support[0], &cone);CHKERRQ(ierr);
20129b6f715bSMatthew G. Knepley         for (faceLoc = 0; faceLoc < coneSize; ++faceLoc) if (cone[faceLoc] == point) break;
20139b6f715bSMatthew G. Knepley         if (faceLoc == coneSize) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %D in cone of support[0] %D", face, support[0]);
20149b6f715bSMatthew G. Knepley         fgeom->face[face][0] = faceLoc;
20159b6f715bSMatthew G. Knepley         ierr = DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x);CHKERRQ(ierr);
20169b6f715bSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[face*totDim+i] = x[i];
20179b6f715bSMatthew G. Knepley         ierr = DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x);CHKERRQ(ierr);
20189b6f715bSMatthew G. Knepley         if (locA) {
20199b6f715bSMatthew G. Knepley           PetscInt subp;
20209b6f715bSMatthew G. Knepley           ierr = DMPlexGetSubpoint(plexA, support[0], &subp);CHKERRQ(ierr);
20219b6f715bSMatthew G. Knepley           ierr = DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x);CHKERRQ(ierr);
20229b6f715bSMatthew G. Knepley           for (i = 0; i < totDimAux; ++i) a[f*totDimAux+i] = x[i];
20239b6f715bSMatthew G. Knepley           ierr = DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x);CHKERRQ(ierr);
20249b6f715bSMatthew G. Knepley         }
20259b6f715bSMatthew G. Knepley       }
20269b6f715bSMatthew G. Knepley       /* Get blocking */
20279b6f715bSMatthew G. Knepley       {
20289b6f715bSMatthew G. Knepley         PetscQuadrature q;
20299b6f715bSMatthew G. Knepley         PetscInt        numBatches, batchSize, numBlocks, blockSize;
20309b6f715bSMatthew G. Knepley         PetscInt        Nq, Nb;
20319b6f715bSMatthew G. Knepley 
203264c72086SMatthew G. Knepley         ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr);
203364c72086SMatthew G. Knepley         ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr);
203464c72086SMatthew G. Knepley         ierr = PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr);
203564c72086SMatthew G. Knepley         ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr);
203664c72086SMatthew G. Knepley         blockSize = Nb*Nq;
203764c72086SMatthew G. Knepley         batchSize = numBlocks * blockSize;
20389b6f715bSMatthew G. Knepley         chunkSize = numBatches*batchSize;
203964c72086SMatthew G. Knepley         ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr);
20409b6f715bSMatthew G. Knepley         numChunks = numFaces / chunkSize;
20419b6f715bSMatthew G. Knepley         Nr        = numFaces % chunkSize;
204264c72086SMatthew G. Knepley         offset    = numFaces - Nr;
204364c72086SMatthew G. Knepley       }
20449b6f715bSMatthew G. Knepley       /* Do integration for each field */
20459b6f715bSMatthew G. Knepley       for (chunk = 0; chunk < numChunks; ++chunk) {
20469b6f715bSMatthew G. Knepley         ierr = PetscFEGeomGetChunk(fgeom, chunk*chunkSize, (chunk+1)*chunkSize, &chunkGeom);CHKERRQ(ierr);
20479b6f715bSMatthew G. Knepley         ierr = PetscFEIntegrateBd(fe, prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral);CHKERRQ(ierr);
20489b6f715bSMatthew G. Knepley         ierr = PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom);CHKERRQ(ierr);
204964c72086SMatthew G. Knepley       }
20509b6f715bSMatthew G. Knepley       ierr = PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom);CHKERRQ(ierr);
20519b6f715bSMatthew G. Knepley       ierr = PetscFEIntegrateBd(fe, prob, field, func, Nr, chunkGeom, &u[offset*totDim], probAux, a ? &a[offset*totDimAux] : NULL, &fintegral[offset*Nf]);CHKERRQ(ierr);
20529b6f715bSMatthew G. Knepley       ierr = PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom);CHKERRQ(ierr);
205364c72086SMatthew G. Knepley       /* Cleanup data arrays */
20549b6f715bSMatthew G. Knepley       ierr = DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom);CHKERRQ(ierr);
20559b6f715bSMatthew G. Knepley       ierr = PetscQuadratureDestroy(&qGeom);CHKERRQ(ierr);
20569b6f715bSMatthew G. Knepley       ierr = PetscFree2(u, a);CHKERRQ(ierr);
20579b6f715bSMatthew G. Knepley       ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr);
205864c72086SMatthew G. Knepley     }
205964c72086SMatthew G. Knepley   }
20609b6f715bSMatthew G. Knepley   if (plex)  {ierr = DMDestroy(&plex);CHKERRQ(ierr);}
20619b6f715bSMatthew G. Knepley   if (plexA) {ierr = DMDestroy(&plexA);CHKERRQ(ierr);}
20629b6f715bSMatthew G. Knepley   PetscFunctionReturn(0);
20639b6f715bSMatthew G. Knepley }
20649b6f715bSMatthew G. Knepley 
20659b6f715bSMatthew G. Knepley /*@
20669b6f715bSMatthew G. Knepley   DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user
20679b6f715bSMatthew G. Knepley 
20689b6f715bSMatthew G. Knepley   Input Parameters:
20699b6f715bSMatthew G. Knepley + dm      - The mesh
20709b6f715bSMatthew G. Knepley . X       - Global input vector
20719b6f715bSMatthew G. Knepley . label   - The boundary DMLabel
20729b6f715bSMatthew G. Knepley . numVals - The number of label values to use, or PETSC_DETERMINE for all values
20739b6f715bSMatthew G. Knepley . vals    - The label values to use, or PETSC_NULL for all values
20749b6f715bSMatthew G. Knepley . func    = The function to integrate along the boundary
20759b6f715bSMatthew G. Knepley - user    - The user context
20769b6f715bSMatthew G. Knepley 
20779b6f715bSMatthew G. Knepley   Output Parameter:
20789b6f715bSMatthew G. Knepley . integral - Integral for each field
20799b6f715bSMatthew G. Knepley 
20809b6f715bSMatthew G. Knepley   Level: developer
20819b6f715bSMatthew G. Knepley 
20829b6f715bSMatthew G. Knepley .seealso: DMPlexComputeIntegralFEM(), DMPlexComputeBdResidualFEM()
20839b6f715bSMatthew G. Knepley @*/
20849b6f715bSMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[],
20859b6f715bSMatthew G. Knepley                                        void (*func)(PetscInt, PetscInt, PetscInt,
20869b6f715bSMatthew G. Knepley                                                     const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
20879b6f715bSMatthew G. Knepley                                                     const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
20889b6f715bSMatthew G. Knepley                                                     PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]),
20899b6f715bSMatthew G. Knepley                                        PetscScalar *integral, void *user)
20909b6f715bSMatthew G. Knepley {
20919b6f715bSMatthew G. Knepley   Vec            locX;
20929b6f715bSMatthew G. Knepley   PetscSection   section;
20939b6f715bSMatthew G. Knepley   DMLabel        depthLabel;
20949b6f715bSMatthew G. Knepley   IS             facetIS;
20959b6f715bSMatthew G. Knepley   PetscInt       dim, Nf, f, v;
20969b6f715bSMatthew G. Knepley   PetscErrorCode ierr;
20979b6f715bSMatthew G. Knepley 
20989b6f715bSMatthew G. Knepley   PetscFunctionBegin;
20999b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21009b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
21019b6f715bSMatthew G. Knepley   PetscValidPointer(label, 3);
21029b6f715bSMatthew G. Knepley   if (vals) PetscValidPointer(vals, 5);
21039b6f715bSMatthew G. Knepley   PetscValidPointer(integral, 6);
21049b6f715bSMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);
21059b6f715bSMatthew G. Knepley   ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr);
21069b6f715bSMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
21079b6f715bSMatthew G. Knepley   ierr = DMLabelGetStratumIS(depthLabel, dim-1, &facetIS);CHKERRQ(ierr);
21089b6f715bSMatthew G. Knepley   ierr = DMGetDefaultSection(dm, &section);CHKERRQ(ierr);
21099b6f715bSMatthew G. Knepley   ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr);
21109b6f715bSMatthew G. Knepley   /* Get local solution with boundary values */
21119b6f715bSMatthew G. Knepley   ierr = DMGetLocalVector(dm, &locX);CHKERRQ(ierr);
21129b6f715bSMatthew G. Knepley   ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr);
21139b6f715bSMatthew G. Knepley   ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr);
21149b6f715bSMatthew G. Knepley   ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr);
21159b6f715bSMatthew G. Knepley   /* Loop over label values */
21169b6f715bSMatthew G. Knepley   ierr = PetscMemzero(integral, Nf * sizeof(PetscScalar));CHKERRQ(ierr);
21179b6f715bSMatthew G. Knepley   for (v = 0; v < numVals; ++v) {
21189b6f715bSMatthew G. Knepley     IS           pointIS;
21199b6f715bSMatthew G. Knepley     PetscInt     numFaces, face;
21209b6f715bSMatthew G. Knepley     PetscScalar *fintegral;
21219b6f715bSMatthew G. Knepley 
21229b6f715bSMatthew G. Knepley     ierr = DMLabelGetStratumIS(label, vals[v], &pointIS);CHKERRQ(ierr);
21239b6f715bSMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
21249b6f715bSMatthew G. Knepley     {
21259b6f715bSMatthew G. Knepley       IS isectIS;
21269b6f715bSMatthew G. Knepley 
21279b6f715bSMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
21289b6f715bSMatthew G. Knepley       ierr = ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS);CHKERRQ(ierr);
21299b6f715bSMatthew G. Knepley       ierr = ISDestroy(&pointIS);CHKERRQ(ierr);
21309b6f715bSMatthew G. Knepley       pointIS = isectIS;
21319b6f715bSMatthew G. Knepley     }
21329b6f715bSMatthew G. Knepley     ierr = ISGetLocalSize(pointIS, &numFaces);CHKERRQ(ierr);
21339b6f715bSMatthew G. Knepley     ierr = PetscCalloc1(numFaces*Nf, &fintegral);CHKERRQ(ierr);
21349b6f715bSMatthew G. Knepley     ierr = DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user);CHKERRQ(ierr);
21359b6f715bSMatthew G. Knepley     /* Sum point contributions into integral */
21369b6f715bSMatthew G. Knepley     for (f = 0; f < Nf; ++f) for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face*Nf+f];
21379b6f715bSMatthew G. Knepley     ierr = PetscFree(fintegral);CHKERRQ(ierr);
21389b6f715bSMatthew G. Knepley     ierr = ISDestroy(&pointIS);CHKERRQ(ierr);
21399b6f715bSMatthew G. Knepley   }
214064c72086SMatthew G. Knepley   ierr = DMRestoreLocalVector(dm, &locX);CHKERRQ(ierr);
21419b6f715bSMatthew G. Knepley   ierr = ISDestroy(&facetIS);CHKERRQ(ierr);
21429b6f715bSMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);
214364c72086SMatthew G. Knepley   PetscFunctionReturn(0);
214464c72086SMatthew G. Knepley }
214564c72086SMatthew G. Knepley 
2146d69c5d34SMatthew G. Knepley /*@
214768132eb9SMatthew G. Knepley   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM.
2148d69c5d34SMatthew G. Knepley 
2149d69c5d34SMatthew G. Knepley   Input Parameters:
2150d69c5d34SMatthew G. Knepley + dmf  - The fine mesh
2151d69c5d34SMatthew G. Knepley . dmc  - The coarse mesh
2152d69c5d34SMatthew G. Knepley - user - The user context
2153d69c5d34SMatthew G. Knepley 
2154d69c5d34SMatthew G. Knepley   Output Parameter:
2155934789fcSMatthew G. Knepley . In  - The interpolation matrix
2156d69c5d34SMatthew G. Knepley 
2157d69c5d34SMatthew G. Knepley   Level: developer
2158d69c5d34SMatthew G. Knepley 
215968132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM()
2160d69c5d34SMatthew G. Knepley @*/
216168132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, Mat In, void *user)
2162d69c5d34SMatthew G. Knepley {
2163d69c5d34SMatthew G. Knepley   DM_Plex          *mesh  = (DM_Plex *) dmc->data;
2164d69c5d34SMatthew G. Knepley   const char       *name  = "Interpolator";
21652764a2aaSMatthew G. Knepley   PetscDS           prob;
2166d69c5d34SMatthew G. Knepley   PetscFE          *feRef;
216797c42addSMatthew G. Knepley   PetscFV          *fvRef;
2168d69c5d34SMatthew G. Knepley   PetscSection      fsection, fglobalSection;
2169d69c5d34SMatthew G. Knepley   PetscSection      csection, cglobalSection;
2170d69c5d34SMatthew G. Knepley   PetscScalar      *elemMat;
21719ac3fadcSMatthew G. Knepley   PetscInt          dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, cEndInterior, c;
21720f2d7e86SMatthew G. Knepley   PetscInt          cTotDim, rTotDim = 0;
2173d69c5d34SMatthew G. Knepley   PetscErrorCode    ierr;
2174d69c5d34SMatthew G. Knepley 
2175d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
2176d69c5d34SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
2177c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr);
2178e87a4003SBarry Smith   ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr);
2179e87a4003SBarry Smith   ierr = DMGetGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr);
2180e87a4003SBarry Smith   ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr);
2181e87a4003SBarry Smith   ierr = DMGetGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr);
2182d69c5d34SMatthew G. Knepley   ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr);
2183d69c5d34SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr);
21849ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
21859ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
21862764a2aaSMatthew G. Knepley   ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr);
218797c42addSMatthew G. Knepley   ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr);
2188d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
218997c42addSMatthew G. Knepley     PetscObject  obj;
219097c42addSMatthew G. Knepley     PetscClassId id;
2191aa7890ccSMatthew G. Knepley     PetscInt     rNb = 0, Nc = 0;
2192d69c5d34SMatthew G. Knepley 
219397c42addSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
219497c42addSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
219597c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
219697c42addSMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
219797c42addSMatthew G. Knepley 
21980f2d7e86SMatthew G. Knepley       ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr);
2199d69c5d34SMatthew G. Knepley       ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr);
22000f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
220197c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
220297c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV) obj;
220397c42addSMatthew G. Knepley       PetscDualSpace Q;
220497c42addSMatthew G. Knepley 
220597c42addSMatthew G. Knepley       ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr);
220697c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr);
220797c42addSMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(Q, &rNb);CHKERRQ(ierr);
220897c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
220997c42addSMatthew G. Knepley     }
22109c3cf19fSMatthew G. Knepley     rTotDim += rNb;
2211d69c5d34SMatthew G. Knepley   }
22122764a2aaSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr);
22130f2d7e86SMatthew G. Knepley   ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr);
22140f2d7e86SMatthew G. Knepley   ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr);
2215d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
2216d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
2217d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
2218d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2219d69c5d34SMatthew G. Knepley     PetscReal       *points;
2220d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
2221d69c5d34SMatthew G. Knepley 
2222d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
222397c42addSMatthew G. Knepley     if (feRef[fieldI]) {
2224d69c5d34SMatthew G. Knepley       ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr);
22250f2d7e86SMatthew G. Knepley       ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr);
222697c42addSMatthew G. Knepley     } else {
222797c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvRef[fieldI], &Qref);CHKERRQ(ierr);
222897c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fvRef[fieldI], &Nc);CHKERRQ(ierr);
222997c42addSMatthew G. Knepley     }
2230d69c5d34SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr);
2231d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
2232d69c5d34SMatthew G. Knepley       ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
22339c3cf19fSMatthew G. Knepley       ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL);CHKERRQ(ierr);
2234d69c5d34SMatthew G. Knepley       npoints += Np;
2235d69c5d34SMatthew G. Knepley     }
2236d69c5d34SMatthew G. Knepley     ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr);
2237d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
2238d69c5d34SMatthew G. Knepley       ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
22399c3cf19fSMatthew G. Knepley       ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr);
2240d69c5d34SMatthew G. Knepley       for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d];
2241d69c5d34SMatthew G. Knepley     }
2242d69c5d34SMatthew G. Knepley 
2243d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
224497c42addSMatthew G. Knepley       PetscObject  obj;
224597c42addSMatthew G. Knepley       PetscClassId id;
2246d69c5d34SMatthew G. Knepley       PetscReal   *B;
22479c3cf19fSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j, qNc;
2248d69c5d34SMatthew G. Knepley 
224997c42addSMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, fieldJ, &obj);CHKERRQ(ierr);
225097c42addSMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
225197c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
225297c42addSMatthew G. Knepley         PetscFE fe = (PetscFE) obj;
2253d69c5d34SMatthew G. Knepley 
2254d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
22550f2d7e86SMatthew G. Knepley         ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr);
22560f2d7e86SMatthew G. Knepley         ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr);
2257ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
2258ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
22599c3cf19fSMatthew G. Knepley           if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %D does not match coarse field %D", Nc, NcJ);
22600f2d7e86SMatthew G. Knepley           ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);
2261d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
2262d69c5d34SMatthew G. Knepley             ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
22639c3cf19fSMatthew G. Knepley             ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights);CHKERRQ(ierr);
22649c3cf19fSMatthew G. Knepley             if (qNc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, NcJ);
2265d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
226636a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2267d172c84bSMatthew G. Knepley                 /*
2268d172c84bSMatthew G. Knepley                    cTotDim:            Total columns in element interpolation matrix, sum of number of dual basis functionals in each field
2269d172c84bSMatthew G. Knepley                    offsetI, offsetJ:   Offsets into the larger element interpolation matrix for different fields
2270d172c84bSMatthew G. Knepley                    fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals
2271d172c84bSMatthew G. Knepley                    qNC, Nc, Ncj, c:    Number of components in this field
2272d172c84bSMatthew G. Knepley                    Np, p:              Number of quad points in the fine grid functional i
2273d172c84bSMatthew G. Knepley                    k:                  i*Np + p, overall point number for the interpolation
2274d172c84bSMatthew G. Knepley                 */
22759c3cf19fSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p*qNc+c];
227636a6d9c0SMatthew G. Knepley               }
2277d69c5d34SMatthew G. Knepley             }
2278d69c5d34SMatthew G. Knepley           }
22790f2d7e86SMatthew G. Knepley           ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr);
2280ffe73a53SMatthew G. Knepley         }
228197c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
228297c42addSMatthew G. Knepley         PetscFV        fv = (PetscFV) obj;
228397c42addSMatthew G. Knepley 
228497c42addSMatthew G. Knepley         /* Evaluate constant function at points */
228597c42addSMatthew G. Knepley         ierr = PetscFVGetNumComponents(fv, &NcJ);CHKERRQ(ierr);
228697c42addSMatthew G. Knepley         cpdim = 1;
228797c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
228897c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
228997c42addSMatthew G. Knepley           if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ);
229097c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
229197c42addSMatthew G. Knepley             ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr);
22929c3cf19fSMatthew G. Knepley             ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights);CHKERRQ(ierr);
22939c3cf19fSMatthew G. Knepley             if (qNc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, NcJ);
229497c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
229597c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2296458eb97cSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += 1.0*qweights[p*qNc+c];
229797c42addSMatthew G. Knepley               }
229897c42addSMatthew G. Knepley             }
229997c42addSMatthew G. Knepley           }
230097c42addSMatthew G. Knepley         }
230197c42addSMatthew G. Knepley       }
2302d172c84bSMatthew G. Knepley       offsetJ += cpdim;
2303d69c5d34SMatthew G. Knepley     }
2304d172c84bSMatthew G. Knepley     offsetI += fpdim;
2305549a8adaSMatthew G. Knepley     ierr = PetscFree(points);CHKERRQ(ierr);
2306d69c5d34SMatthew G. Knepley   }
23070f2d7e86SMatthew G. Knepley   if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);}
23087f5b169aSMatthew G. Knepley   /* Preallocate matrix */
23097f5b169aSMatthew G. Knepley   {
2310c094ef40SMatthew G. Knepley     Mat          preallocator;
2311c094ef40SMatthew G. Knepley     PetscScalar *vals;
2312c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
2313c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
23147f5b169aSMatthew G. Knepley 
2315c094ef40SMatthew G. Knepley     ierr = MatGetLocalSize(In, &locRows, &locCols);CHKERRQ(ierr);
2316c094ef40SMatthew G. Knepley     ierr = MatCreate(PetscObjectComm((PetscObject) In), &preallocator);CHKERRQ(ierr);
2317c094ef40SMatthew G. Knepley     ierr = MatSetType(preallocator, MATPREALLOCATOR);CHKERRQ(ierr);
2318c094ef40SMatthew G. Knepley     ierr = MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr);
2319c094ef40SMatthew G. Knepley     ierr = MatSetUp(preallocator);CHKERRQ(ierr);
2320c094ef40SMatthew G. Knepley     ierr = PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr);
23217f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
23227f5b169aSMatthew G. Knepley       ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr);
2323c094ef40SMatthew G. Knepley       ierr = MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES);CHKERRQ(ierr);
23247f5b169aSMatthew G. Knepley     }
2325c094ef40SMatthew G. Knepley     ierr = PetscFree3(vals,cellCIndices,cellFIndices);CHKERRQ(ierr);
2326c094ef40SMatthew G. Knepley     ierr = MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2327c094ef40SMatthew G. Knepley     ierr = MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2328c094ef40SMatthew G. Knepley     ierr = MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In);CHKERRQ(ierr);
2329c094ef40SMatthew G. Knepley     ierr = MatDestroy(&preallocator);CHKERRQ(ierr);
23307f5b169aSMatthew G. Knepley   }
23317f5b169aSMatthew G. Knepley   /* Fill matrix */
23327f5b169aSMatthew G. Knepley   ierr = MatZeroEntries(In);CHKERRQ(ierr);
2333d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
2334934789fcSMatthew G. Knepley     ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr);
2335d69c5d34SMatthew G. Knepley   }
2336549a8adaSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);}
233797c42addSMatthew G. Knepley   ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr);
2338549a8adaSMatthew G. Knepley   ierr = PetscFree(elemMat);CHKERRQ(ierr);
2339934789fcSMatthew G. Knepley   ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2340934789fcSMatthew G. Knepley   ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2341d69c5d34SMatthew G. Knepley   if (mesh->printFEM) {
2342825f8a23SLisandro Dalcin     ierr = PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name);CHKERRQ(ierr);
2343934789fcSMatthew G. Knepley     ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr);
2344825f8a23SLisandro Dalcin     ierr = MatView(In, NULL);CHKERRQ(ierr);
2345d69c5d34SMatthew G. Knepley   }
2346d69c5d34SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
2347d69c5d34SMatthew G. Knepley   PetscFunctionReturn(0);
2348d69c5d34SMatthew G. Knepley }
23496c73c22cSMatthew G. Knepley 
2350bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user)
2351bd041c0cSMatthew G. Knepley {
2352bd041c0cSMatthew G. Knepley   SETERRQ(PetscObjectComm((PetscObject) dmc), PETSC_ERR_SUP, "Laziness");
2353bd041c0cSMatthew G. Knepley }
2354bd041c0cSMatthew G. Knepley 
235568132eb9SMatthew G. Knepley /*@
235668132eb9SMatthew G. Knepley   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM.
235768132eb9SMatthew G. Knepley 
235868132eb9SMatthew G. Knepley   Input Parameters:
235968132eb9SMatthew G. Knepley + dmf  - The fine mesh
236068132eb9SMatthew G. Knepley . dmc  - The coarse mesh
236168132eb9SMatthew G. Knepley - user - The user context
236268132eb9SMatthew G. Knepley 
236368132eb9SMatthew G. Knepley   Output Parameter:
236468132eb9SMatthew G. Knepley . In  - The interpolation matrix
236568132eb9SMatthew G. Knepley 
236668132eb9SMatthew G. Knepley   Level: developer
236768132eb9SMatthew G. Knepley 
236868132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM()
236968132eb9SMatthew G. Knepley @*/
237068132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
23714ef9d792SMatthew G. Knepley {
237264e98e1dSMatthew G. Knepley   DM_Plex       *mesh = (DM_Plex *) dmf->data;
237364e98e1dSMatthew G. Knepley   const char    *name = "Interpolator";
23744ef9d792SMatthew G. Knepley   PetscDS        prob;
23754ef9d792SMatthew G. Knepley   PetscSection   fsection, csection, globalFSection, globalCSection;
2376e8f14785SLisandro Dalcin   PetscHSetIJ    ht;
23774ef9d792SMatthew G. Knepley   PetscLayout    rLayout;
23784ef9d792SMatthew G. Knepley   PetscInt      *dnz, *onz;
23794ef9d792SMatthew G. Knepley   PetscInt       locRows, rStart, rEnd;
23804ef9d792SMatthew G. Knepley   PetscReal     *x, *v0, *J, *invJ, detJ;
23814ef9d792SMatthew G. Knepley   PetscReal     *v0c, *Jc, *invJc, detJc;
23824ef9d792SMatthew G. Knepley   PetscScalar   *elemMat;
23834ef9d792SMatthew G. Knepley   PetscInt       dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
23844ef9d792SMatthew G. Knepley   PetscErrorCode ierr;
23854ef9d792SMatthew G. Knepley 
23864ef9d792SMatthew G. Knepley   PetscFunctionBegin;
238777711781SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
23884ef9d792SMatthew G. Knepley   ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr);
23894ef9d792SMatthew G. Knepley   ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr);
23904ef9d792SMatthew G. Knepley   ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr);
23914ef9d792SMatthew G. Knepley   ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr);
23924ef9d792SMatthew G. Knepley   ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr);
23934ef9d792SMatthew G. Knepley   ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr);
2394e87a4003SBarry Smith   ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr);
2395e87a4003SBarry Smith   ierr = DMGetGlobalSection(dmf, &globalFSection);CHKERRQ(ierr);
2396e87a4003SBarry Smith   ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr);
2397e87a4003SBarry Smith   ierr = DMGetGlobalSection(dmc, &globalCSection);CHKERRQ(ierr);
23984ef9d792SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr);
23994ef9d792SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
24009c3cf19fSMatthew G. Knepley   ierr = PetscMalloc1(totDim, &elemMat);CHKERRQ(ierr);
24014ef9d792SMatthew G. Knepley 
24024ef9d792SMatthew G. Knepley   ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr);
24034ef9d792SMatthew G. Knepley   ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr);
24044ef9d792SMatthew G. Knepley   ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr);
24054ef9d792SMatthew G. Knepley   ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr);
24064ef9d792SMatthew G. Knepley   ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr);
24074ef9d792SMatthew G. Knepley   ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr);
24084ef9d792SMatthew G. Knepley   ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr);
24094ef9d792SMatthew G. Knepley   ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr);
2410e8f14785SLisandro Dalcin   ierr = PetscHSetIJCreate(&ht);CHKERRQ(ierr);
24114ef9d792SMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
24124ef9d792SMatthew G. Knepley     PetscObject      obj;
24134ef9d792SMatthew G. Knepley     PetscClassId     id;
2414c0d7054bSMatthew G. Knepley     PetscDualSpace   Q = NULL;
24154ef9d792SMatthew G. Knepley     PetscQuadrature  f;
241617f047d8SMatthew G. Knepley     const PetscReal *qpoints;
241717f047d8SMatthew G. Knepley     PetscInt         Nc, Np, fpdim, i, d;
24184ef9d792SMatthew G. Knepley 
24194ef9d792SMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr);
24204ef9d792SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
24214ef9d792SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
24224ef9d792SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
24234ef9d792SMatthew G. Knepley 
24244ef9d792SMatthew G. Knepley       ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr);
24254ef9d792SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
24264ef9d792SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
24274ef9d792SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
24284ef9d792SMatthew G. Knepley 
24294ef9d792SMatthew G. Knepley       ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr);
24304ef9d792SMatthew G. Knepley       Nc   = 1;
24314ef9d792SMatthew G. Knepley     }
24324ef9d792SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr);
24334ef9d792SMatthew G. Knepley     /* For each fine grid cell */
24344ef9d792SMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
24354ef9d792SMatthew G. Knepley       PetscInt *findices,   *cindices;
24364ef9d792SMatthew G. Knepley       PetscInt  numFIndices, numCIndices;
24374ef9d792SMatthew G. Knepley 
24386ecaa68aSToby Isaac       ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
24394ef9d792SMatthew G. Knepley       ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
24409c3cf19fSMatthew G. Knepley       if (numFIndices != fpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim);
24414ef9d792SMatthew G. Knepley       for (i = 0; i < fpdim; ++i) {
24424ef9d792SMatthew G. Knepley         Vec             pointVec;
24434ef9d792SMatthew G. Knepley         PetscScalar    *pV;
24443a93e3b7SToby Isaac         PetscSF         coarseCellSF = NULL;
24453a93e3b7SToby Isaac         const PetscSFNode *coarseCells;
24469c3cf19fSMatthew G. Knepley         PetscInt        numCoarseCells, q, c;
24474ef9d792SMatthew G. Knepley 
24484ef9d792SMatthew G. Knepley         /* Get points from the dual basis functional quadrature */
24494ef9d792SMatthew G. Knepley         ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr);
24509c3cf19fSMatthew G. Knepley         ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr);
24514ef9d792SMatthew G. Knepley         ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr);
24524ef9d792SMatthew G. Knepley         ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr);
24534ef9d792SMatthew G. Knepley         ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr);
24544ef9d792SMatthew G. Knepley         for (q = 0; q < Np; ++q) {
2455c330f8ffSToby Isaac           const PetscReal xi0[3] = {-1., -1., -1.};
2456c330f8ffSToby Isaac 
24574ef9d792SMatthew G. Knepley           /* Transform point to real space */
2458c330f8ffSToby Isaac           CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x);
24594ef9d792SMatthew G. Knepley           for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d];
24604ef9d792SMatthew G. Knepley         }
24614ef9d792SMatthew G. Knepley         ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr);
24624ef9d792SMatthew G. Knepley         /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
24631555c271SMatthew G. Knepley         /* OPT: Pack all quad points from fine cell */
246462a38674SMatthew G. Knepley         ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr);
24653a93e3b7SToby Isaac         ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr);
24664ef9d792SMatthew G. Knepley         /* Update preallocation info */
24673a93e3b7SToby Isaac         ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr);
24683a93e3b7SToby Isaac         if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located");
24699c3cf19fSMatthew G. Knepley         {
2470e8f14785SLisandro Dalcin           PetscHashIJKey key;
2471e8f14785SLisandro Dalcin           PetscBool      missing;
24724ef9d792SMatthew G. Knepley 
2473e8f14785SLisandro Dalcin           key.i = findices[i];
2474e8f14785SLisandro Dalcin           if (key.i >= 0) {
24754ef9d792SMatthew G. Knepley             /* Get indices for coarse elements */
24764ef9d792SMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
24773a93e3b7SToby Isaac               ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
24784ef9d792SMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
2479e8f14785SLisandro Dalcin                 key.j = cindices[c];
2480e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
2481e8f14785SLisandro Dalcin                 ierr = PetscHSetIJQueryAdd(ht, key, &missing);CHKERRQ(ierr);
24824ef9d792SMatthew G. Knepley                 if (missing) {
2483e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i-rStart];
2484e8f14785SLisandro Dalcin                   else                                     ++onz[key.i-rStart];
24854ef9d792SMatthew G. Knepley                 }
24864ef9d792SMatthew G. Knepley               }
24873a93e3b7SToby Isaac               ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
24884ef9d792SMatthew G. Knepley             }
24894ef9d792SMatthew G. Knepley           }
24908c543595SMatthew G. Knepley         }
24913a93e3b7SToby Isaac         ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr);
24924ef9d792SMatthew G. Knepley         ierr = VecDestroy(&pointVec);CHKERRQ(ierr);
24934ef9d792SMatthew G. Knepley       }
249446bdb399SToby Isaac       ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
24954ef9d792SMatthew G. Knepley     }
24964ef9d792SMatthew G. Knepley   }
2497e8f14785SLisandro Dalcin   ierr = PetscHSetIJDestroy(&ht);CHKERRQ(ierr);
24984ef9d792SMatthew G. Knepley   ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr);
24994ef9d792SMatthew G. Knepley   ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
25004ef9d792SMatthew G. Knepley   ierr = PetscFree2(dnz,onz);CHKERRQ(ierr);
25014ef9d792SMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
25024ef9d792SMatthew G. Knepley     PetscObject      obj;
25034ef9d792SMatthew G. Knepley     PetscClassId     id;
2504c0d7054bSMatthew G. Knepley     PetscDualSpace   Q = NULL;
25054ef9d792SMatthew G. Knepley     PetscQuadrature  f;
25064ef9d792SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
25079c3cf19fSMatthew G. Knepley     PetscInt         Nc, qNc, Np, fpdim, i, d;
25084ef9d792SMatthew G. Knepley 
25094ef9d792SMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr);
25104ef9d792SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
25114ef9d792SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
25124ef9d792SMatthew G. Knepley       PetscFE fe = (PetscFE) obj;
25134ef9d792SMatthew G. Knepley 
25144ef9d792SMatthew G. Knepley       ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr);
25154ef9d792SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
25164ef9d792SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
25174ef9d792SMatthew G. Knepley       PetscFV fv = (PetscFV) obj;
25184ef9d792SMatthew G. Knepley 
25194ef9d792SMatthew G. Knepley       ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr);
25204ef9d792SMatthew G. Knepley       Nc   = 1;
252125ce1634SJed Brown     } else SETERRQ1(PetscObjectComm((PetscObject)dmc),PETSC_ERR_ARG_WRONG,"Unknown discretization type for field %d",field);
25224ef9d792SMatthew G. Knepley     ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr);
25234ef9d792SMatthew G. Knepley     /* For each fine grid cell */
25244ef9d792SMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
25254ef9d792SMatthew G. Knepley       PetscInt *findices,   *cindices;
25264ef9d792SMatthew G. Knepley       PetscInt  numFIndices, numCIndices;
25274ef9d792SMatthew G. Knepley 
25286ecaa68aSToby Isaac       ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
25294ef9d792SMatthew G. Knepley       ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
25309c3cf19fSMatthew G. Knepley       if (numFIndices != fpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim);
25314ef9d792SMatthew G. Knepley       for (i = 0; i < fpdim; ++i) {
25324ef9d792SMatthew G. Knepley         Vec             pointVec;
25334ef9d792SMatthew G. Knepley         PetscScalar    *pV;
253412111d7cSToby Isaac         PetscSF         coarseCellSF = NULL;
25353a93e3b7SToby Isaac         const PetscSFNode *coarseCells;
253617f047d8SMatthew G. Knepley         PetscInt        numCoarseCells, cpdim, q, c, j;
25374ef9d792SMatthew G. Knepley 
25384ef9d792SMatthew G. Knepley         /* Get points from the dual basis functional quadrature */
25394ef9d792SMatthew G. Knepley         ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr);
25409c3cf19fSMatthew G. Knepley         ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights);CHKERRQ(ierr);
25419c3cf19fSMatthew G. Knepley         if (qNc != Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, Nc);
25424ef9d792SMatthew G. Knepley         ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr);
25434ef9d792SMatthew G. Knepley         ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr);
25444ef9d792SMatthew G. Knepley         ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr);
25454ef9d792SMatthew G. Knepley         for (q = 0; q < Np; ++q) {
2546c330f8ffSToby Isaac           const PetscReal xi0[3] = {-1., -1., -1.};
2547c330f8ffSToby Isaac 
25484ef9d792SMatthew G. Knepley           /* Transform point to real space */
2549c330f8ffSToby Isaac           CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x);
25504ef9d792SMatthew G. Knepley           for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d];
25514ef9d792SMatthew G. Knepley         }
25524ef9d792SMatthew G. Knepley         ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr);
25534ef9d792SMatthew G. Knepley         /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
25541555c271SMatthew G. Knepley         /* OPT: Read this out from preallocation information */
255562a38674SMatthew G. Knepley         ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr);
25564ef9d792SMatthew G. Knepley         /* Update preallocation info */
25573a93e3b7SToby Isaac         ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr);
25583a93e3b7SToby Isaac         if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located");
25594ef9d792SMatthew G. Knepley         ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr);
25604ef9d792SMatthew G. Knepley         for (ccell = 0; ccell < numCoarseCells; ++ccell) {
2561826eb36dSMatthew G. Knepley           PetscReal pVReal[3];
2562c330f8ffSToby Isaac           const PetscReal xi0[3] = {-1., -1., -1.};
2563826eb36dSMatthew G. Knepley 
25643a93e3b7SToby Isaac           ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
25654ef9d792SMatthew G. Knepley           /* Transform points from real space to coarse reference space */
25663a93e3b7SToby Isaac           ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr);
2567e2d86523SMatthew G. Knepley           for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]);
2568c330f8ffSToby Isaac           CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
25694ef9d792SMatthew G. Knepley 
25704ef9d792SMatthew G. Knepley           if (id == PETSCFE_CLASSID) {
25714ef9d792SMatthew G. Knepley             PetscFE    fe = (PetscFE) obj;
25724ef9d792SMatthew G. Knepley             PetscReal *B;
25734ef9d792SMatthew G. Knepley 
25744ef9d792SMatthew G. Knepley             /* Evaluate coarse basis on contained point */
25754ef9d792SMatthew G. Knepley             ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr);
25764ef9d792SMatthew G. Knepley             ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);
25779c3cf19fSMatthew G. Knepley             ierr = PetscMemzero(elemMat, cpdim * sizeof(PetscScalar));CHKERRQ(ierr);
25784ef9d792SMatthew G. Knepley             /* Get elemMat entries by multiplying by weight */
25794ef9d792SMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
25809c3cf19fSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += B[j*Nc + c]*qweights[ccell*qNc + c];
25814ef9d792SMatthew G. Knepley             }
25824ef9d792SMatthew G. Knepley             ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr);
25834ef9d792SMatthew G. Knepley           } else {
25844ef9d792SMatthew G. Knepley             cpdim = 1;
25854ef9d792SMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
25869c3cf19fSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*qweights[ccell*qNc + c];
25874ef9d792SMatthew G. Knepley             }
25884ef9d792SMatthew G. Knepley           }
25894ef9d792SMatthew G. Knepley           /* Update interpolator */
25909c3cf19fSMatthew G. Knepley           if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);}
25919c3cf19fSMatthew G. Knepley           if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim);
25929c3cf19fSMatthew G. Knepley           ierr = MatSetValues(In, 1, &findices[i], numCIndices, cindices, elemMat, INSERT_VALUES);CHKERRQ(ierr);
25933a93e3b7SToby Isaac           ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
25944ef9d792SMatthew G. Knepley         }
25954ef9d792SMatthew G. Knepley         ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr);
25963a93e3b7SToby Isaac         ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr);
25974ef9d792SMatthew G. Knepley         ierr = VecDestroy(&pointVec);CHKERRQ(ierr);
25984ef9d792SMatthew G. Knepley       }
259946bdb399SToby Isaac       ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
26004ef9d792SMatthew G. Knepley     }
26014ef9d792SMatthew G. Knepley   }
26024ef9d792SMatthew G. Knepley   ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr);
26034ef9d792SMatthew G. Knepley   ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr);
26044ef9d792SMatthew G. Knepley   ierr = PetscFree(elemMat);CHKERRQ(ierr);
26054ef9d792SMatthew G. Knepley   ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26064ef9d792SMatthew G. Knepley   ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
260777711781SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
26084ef9d792SMatthew G. Knepley   PetscFunctionReturn(0);
26094ef9d792SMatthew G. Knepley }
26104ef9d792SMatthew G. Knepley 
261146fa42a0SMatthew G. Knepley /*@
2612bd041c0cSMatthew G. Knepley   DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse DM to a non-nested fine DM.
2613bd041c0cSMatthew G. Knepley 
2614bd041c0cSMatthew G. Knepley   Input Parameters:
2615bd041c0cSMatthew G. Knepley + dmf  - The fine mesh
2616bd041c0cSMatthew G. Knepley . dmc  - The coarse mesh
2617bd041c0cSMatthew G. Knepley - user - The user context
2618bd041c0cSMatthew G. Knepley 
2619bd041c0cSMatthew G. Knepley   Output Parameter:
2620bd041c0cSMatthew G. Knepley . mass  - The mass matrix
2621bd041c0cSMatthew G. Knepley 
2622bd041c0cSMatthew G. Knepley   Level: developer
2623bd041c0cSMatthew G. Knepley 
2624bd041c0cSMatthew G. Knepley .seealso: DMPlexComputeMassMatrixNested(), DMPlexComputeInterpolatorNested(), DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM()
2625bd041c0cSMatthew G. Knepley @*/
2626bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user)
2627bd041c0cSMatthew G. Knepley {
2628bd041c0cSMatthew G. Knepley   DM_Plex       *mesh = (DM_Plex *) dmf->data;
2629bd041c0cSMatthew G. Knepley   const char    *name = "Mass Matrix";
2630bd041c0cSMatthew G. Knepley   PetscDS        prob;
2631bd041c0cSMatthew G. Knepley   PetscSection   fsection, csection, globalFSection, globalCSection;
2632e8f14785SLisandro Dalcin   PetscHSetIJ    ht;
2633bd041c0cSMatthew G. Knepley   PetscLayout    rLayout;
2634bd041c0cSMatthew G. Knepley   PetscInt      *dnz, *onz;
2635bd041c0cSMatthew G. Knepley   PetscInt       locRows, rStart, rEnd;
2636bd041c0cSMatthew G. Knepley   PetscReal     *x, *v0, *J, *invJ, detJ;
2637bd041c0cSMatthew G. Knepley   PetscReal     *v0c, *Jc, *invJc, detJc;
2638bd041c0cSMatthew G. Knepley   PetscScalar   *elemMat;
2639bd041c0cSMatthew G. Knepley   PetscInt       dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
2640bd041c0cSMatthew G. Knepley   PetscErrorCode ierr;
2641bd041c0cSMatthew G. Knepley 
2642bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
2643bd041c0cSMatthew G. Knepley   ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr);
2644bd041c0cSMatthew G. Knepley   ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr);
2645bd041c0cSMatthew G. Knepley   ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr);
2646bd041c0cSMatthew G. Knepley   ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr);
2647bd041c0cSMatthew G. Knepley   ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr);
2648bd041c0cSMatthew G. Knepley   ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr);
2649e87a4003SBarry Smith   ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr);
2650e87a4003SBarry Smith   ierr = DMGetGlobalSection(dmf, &globalFSection);CHKERRQ(ierr);
2651e87a4003SBarry Smith   ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr);
2652e87a4003SBarry Smith   ierr = DMGetGlobalSection(dmc, &globalCSection);CHKERRQ(ierr);
2653bd041c0cSMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr);
2654bd041c0cSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
2655bd041c0cSMatthew G. Knepley   ierr = PetscMalloc1(totDim, &elemMat);CHKERRQ(ierr);
2656bd041c0cSMatthew G. Knepley 
2657bd041c0cSMatthew G. Knepley   ierr = MatGetLocalSize(mass, &locRows, NULL);CHKERRQ(ierr);
2658bd041c0cSMatthew G. Knepley   ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) mass), &rLayout);CHKERRQ(ierr);
2659bd041c0cSMatthew G. Knepley   ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr);
2660bd041c0cSMatthew G. Knepley   ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr);
2661bd041c0cSMatthew G. Knepley   ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr);
2662bd041c0cSMatthew G. Knepley   ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr);
2663bd041c0cSMatthew G. Knepley   ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr);
2664bd041c0cSMatthew G. Knepley   ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr);
2665e8f14785SLisandro Dalcin   ierr = PetscHSetIJCreate(&ht);CHKERRQ(ierr);
2666bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
2667bd041c0cSMatthew G. Knepley     PetscObject      obj;
2668bd041c0cSMatthew G. Knepley     PetscClassId     id;
2669bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
2670bd041c0cSMatthew G. Knepley     const PetscReal *qpoints;
2671bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
2672bd041c0cSMatthew G. Knepley 
2673bd041c0cSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr);
2674bd041c0cSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
2675bd041c0cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {ierr = PetscFEGetQuadrature((PetscFE) obj, &quad);CHKERRQ(ierr);}
2676bd041c0cSMatthew G. Knepley     else                       {ierr = PetscFVGetQuadrature((PetscFV) obj, &quad);CHKERRQ(ierr);}
2677bd041c0cSMatthew G. Knepley     ierr = PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL);CHKERRQ(ierr);
2678bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
2679bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2680bd041c0cSMatthew G. Knepley       Vec                pointVec;
2681bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
2682bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
2683bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
2684bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, q, c;
2685bd041c0cSMatthew G. Knepley       PetscInt          *findices,   *cindices;
2686bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
2687bd041c0cSMatthew G. Knepley 
2688bd041c0cSMatthew G. Knepley       ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
2689bd041c0cSMatthew G. Knepley       ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
2690bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
2691bd041c0cSMatthew G. Knepley       ierr = VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec);CHKERRQ(ierr);
2692bd041c0cSMatthew G. Knepley       ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr);
2693bd041c0cSMatthew G. Knepley       ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr);
2694bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
2695c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
2696c330f8ffSToby Isaac 
2697bd041c0cSMatthew G. Knepley         /* Transform point to real space */
2698c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x);
2699bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d];
2700bd041c0cSMatthew G. Knepley       }
2701bd041c0cSMatthew G. Knepley       ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr);
2702bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
2703bd041c0cSMatthew G. Knepley       ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr);
2704bd041c0cSMatthew G. Knepley       ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr);
2705bd041c0cSMatthew G. Knepley       /* Update preallocation info */
2706bd041c0cSMatthew G. Knepley       ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr);
2707bd041c0cSMatthew G. Knepley       if (numCoarseCells != Nq) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located");
2708bd041c0cSMatthew G. Knepley       {
2709e8f14785SLisandro Dalcin         PetscHashIJKey key;
2710e8f14785SLisandro Dalcin         PetscBool      missing;
2711bd041c0cSMatthew G. Knepley 
2712bd041c0cSMatthew G. Knepley         for (i = 0; i < numFIndices; ++i) {
2713e8f14785SLisandro Dalcin           key.i = findices[i];
2714e8f14785SLisandro Dalcin           if (key.i >= 0) {
2715bd041c0cSMatthew G. Knepley             /* Get indices for coarse elements */
2716bd041c0cSMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
2717bd041c0cSMatthew G. Knepley               ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
2718bd041c0cSMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
2719e8f14785SLisandro Dalcin                 key.j = cindices[c];
2720e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
2721e8f14785SLisandro Dalcin                 ierr = PetscHSetIJQueryAdd(ht, key, &missing);CHKERRQ(ierr);
2722bd041c0cSMatthew G. Knepley                 if (missing) {
2723e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i-rStart];
2724e8f14785SLisandro Dalcin                   else                                     ++onz[key.i-rStart];
2725bd041c0cSMatthew G. Knepley                 }
2726bd041c0cSMatthew G. Knepley               }
2727bd041c0cSMatthew G. Knepley               ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
2728bd041c0cSMatthew G. Knepley             }
2729bd041c0cSMatthew G. Knepley           }
2730bd041c0cSMatthew G. Knepley         }
2731bd041c0cSMatthew G. Knepley       }
2732bd041c0cSMatthew G. Knepley       ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr);
2733bd041c0cSMatthew G. Knepley       ierr = VecDestroy(&pointVec);CHKERRQ(ierr);
2734bd041c0cSMatthew G. Knepley       ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
2735bd041c0cSMatthew G. Knepley     }
2736bd041c0cSMatthew G. Knepley   }
2737e8f14785SLisandro Dalcin   ierr = PetscHSetIJDestroy(&ht);CHKERRQ(ierr);
2738bd041c0cSMatthew G. Knepley   ierr = MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr);
2739bd041c0cSMatthew G. Knepley   ierr = MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2740bd041c0cSMatthew G. Knepley   ierr = PetscFree2(dnz,onz);CHKERRQ(ierr);
2741bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
2742bd041c0cSMatthew G. Knepley     PetscObject      obj;
2743bd041c0cSMatthew G. Knepley     PetscClassId     id;
2744bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
2745bd041c0cSMatthew G. Knepley     PetscReal       *Bfine;
2746bd041c0cSMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2747bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
2748bd041c0cSMatthew G. Knepley 
2749bd041c0cSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr);
2750bd041c0cSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
2751bd041c0cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {ierr = PetscFEGetQuadrature((PetscFE) obj, &quad);CHKERRQ(ierr);ierr = PetscFEGetDefaultTabulation((PetscFE) obj, &Bfine, NULL, NULL);CHKERRQ(ierr);}
2752bd041c0cSMatthew G. Knepley     else                       {ierr = PetscFVGetQuadrature((PetscFV) obj, &quad);CHKERRQ(ierr);}
2753bd041c0cSMatthew G. Knepley     ierr = PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights);CHKERRQ(ierr);
2754bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
2755bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2756bd041c0cSMatthew G. Knepley       Vec                pointVec;
2757bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
2758bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
2759bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
2760bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, cpdim, q, c, j;
2761bd041c0cSMatthew G. Knepley       PetscInt          *findices,   *cindices;
2762bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
2763bd041c0cSMatthew G. Knepley 
2764bd041c0cSMatthew G. Knepley       ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
2765bd041c0cSMatthew G. Knepley       ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr);
2766bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
2767bd041c0cSMatthew G. Knepley       ierr = VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec);CHKERRQ(ierr);
2768bd041c0cSMatthew G. Knepley       ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr);
2769bd041c0cSMatthew G. Knepley       ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr);
2770bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
2771c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
2772c330f8ffSToby Isaac 
2773bd041c0cSMatthew G. Knepley         /* Transform point to real space */
2774c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x);
2775bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d];
2776bd041c0cSMatthew G. Knepley       }
2777bd041c0cSMatthew G. Knepley       ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr);
2778bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
2779bd041c0cSMatthew G. Knepley       ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr);
2780bd041c0cSMatthew G. Knepley       /* Update matrix */
2781bd041c0cSMatthew G. Knepley       ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr);
2782bd041c0cSMatthew G. Knepley       if (numCoarseCells != Nq) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located");
2783bd041c0cSMatthew G. Knepley       ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr);
2784bd041c0cSMatthew G. Knepley       for (ccell = 0; ccell < numCoarseCells; ++ccell) {
2785bd041c0cSMatthew G. Knepley         PetscReal pVReal[3];
2786c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
2787c330f8ffSToby Isaac 
2788bd041c0cSMatthew G. Knepley 
2789bd041c0cSMatthew G. Knepley         ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
2790bd041c0cSMatthew G. Knepley         /* Transform points from real space to coarse reference space */
2791bd041c0cSMatthew G. Knepley         ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr);
2792bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]);
2793c330f8ffSToby Isaac         CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
2794bd041c0cSMatthew G. Knepley 
2795bd041c0cSMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
2796bd041c0cSMatthew G. Knepley           PetscFE    fe = (PetscFE) obj;
2797bd041c0cSMatthew G. Knepley           PetscReal *B;
2798bd041c0cSMatthew G. Knepley 
2799bd041c0cSMatthew G. Knepley           /* Evaluate coarse basis on contained point */
2800bd041c0cSMatthew G. Knepley           ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr);
2801bd041c0cSMatthew G. Knepley           ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);
2802bd041c0cSMatthew G. Knepley           /* Get elemMat entries by multiplying by weight */
2803bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
2804bd041c0cSMatthew G. Knepley             ierr = PetscMemzero(elemMat, cpdim * sizeof(PetscScalar));CHKERRQ(ierr);
2805bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
2806bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += B[j*Nc + c]*Bfine[(ccell*numFIndices + i)*Nc + c]*qweights[ccell*Nc + c]*detJ;
2807bd041c0cSMatthew G. Knepley             }
2808bd041c0cSMatthew G. Knepley             /* Update interpolator */
2809bd041c0cSMatthew G. Knepley             if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);}
2810bd041c0cSMatthew G. Knepley             if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim);
2811bd041c0cSMatthew G. Knepley             ierr = MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES);CHKERRQ(ierr);
2812bd041c0cSMatthew G. Knepley           }
2813bd041c0cSMatthew G. Knepley           ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr);
2814bd041c0cSMatthew G. Knepley         } else {
2815bd041c0cSMatthew G. Knepley           cpdim = 1;
2816bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
2817bd041c0cSMatthew G. Knepley             ierr = PetscMemzero(elemMat, cpdim * sizeof(PetscScalar));CHKERRQ(ierr);
2818bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
2819bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*1.0*qweights[ccell*Nc + c]*detJ;
2820bd041c0cSMatthew G. Knepley             }
2821bd041c0cSMatthew G. Knepley             /* Update interpolator */
2822bd041c0cSMatthew G. Knepley             if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);}
2823bd041c0cSMatthew G. Knepley             ierr = PetscPrintf(PETSC_COMM_SELF, "Nq: %d %d Nf: %d %d Nc: %d %d\n", ccell, Nq, i, numFIndices, j, numCIndices);CHKERRQ(ierr);
2824bd041c0cSMatthew G. Knepley             if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim);
2825bd041c0cSMatthew G. Knepley             ierr = MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES);CHKERRQ(ierr);
2826bd041c0cSMatthew G. Knepley           }
2827bd041c0cSMatthew G. Knepley         }
2828bd041c0cSMatthew G. Knepley         ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr);
2829bd041c0cSMatthew G. Knepley       }
2830bd041c0cSMatthew G. Knepley       ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr);
2831bd041c0cSMatthew G. Knepley       ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr);
2832bd041c0cSMatthew G. Knepley       ierr = VecDestroy(&pointVec);CHKERRQ(ierr);
2833bd041c0cSMatthew G. Knepley       ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr);
2834bd041c0cSMatthew G. Knepley     }
2835bd041c0cSMatthew G. Knepley   }
2836bd041c0cSMatthew G. Knepley   ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr);
2837bd041c0cSMatthew G. Knepley   ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr);
2838bd041c0cSMatthew G. Knepley   ierr = PetscFree(elemMat);CHKERRQ(ierr);
2839bd041c0cSMatthew G. Knepley   ierr = MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2840bd041c0cSMatthew G. Knepley   ierr = MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2841bd041c0cSMatthew G. Knepley   PetscFunctionReturn(0);
2842bd041c0cSMatthew G. Knepley }
2843bd041c0cSMatthew G. Knepley 
2844bd041c0cSMatthew G. Knepley /*@
284546fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
284646fa42a0SMatthew G. Knepley 
284746fa42a0SMatthew G. Knepley   Input Parameters:
284846fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
284946fa42a0SMatthew G. Knepley - dmf  - The fine mesh
285046fa42a0SMatthew G. Knepley - user - The user context
285146fa42a0SMatthew G. Knepley 
285246fa42a0SMatthew G. Knepley   Output Parameter:
285346fa42a0SMatthew G. Knepley . sc   - The mapping
285446fa42a0SMatthew G. Knepley 
285546fa42a0SMatthew G. Knepley   Level: developer
285646fa42a0SMatthew G. Knepley 
285746fa42a0SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM()
285846fa42a0SMatthew G. Knepley @*/
28597c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
28607c927364SMatthew G. Knepley {
2861e9d4ef1bSMatthew G. Knepley   PetscDS        prob;
28627c927364SMatthew G. Knepley   PetscFE       *feRef;
286397c42addSMatthew G. Knepley   PetscFV       *fvRef;
28647c927364SMatthew G. Knepley   Vec            fv, cv;
28657c927364SMatthew G. Knepley   IS             fis, cis;
28667c927364SMatthew G. Knepley   PetscSection   fsection, fglobalSection, csection, cglobalSection;
28677c927364SMatthew G. Knepley   PetscInt      *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
28680bd915a7SMatthew G. Knepley   PetscInt       cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, cEndInterior, c, dim, d, startC, endC, offsetC, offsetF, m;
28696f3d3cbcSMatthew G. Knepley   PetscBool     *needAvg;
28707c927364SMatthew G. Knepley   PetscErrorCode ierr;
28717c927364SMatthew G. Knepley 
28727c927364SMatthew G. Knepley   PetscFunctionBegin;
287375a69067SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
2874c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr);
2875e87a4003SBarry Smith   ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr);
2876e87a4003SBarry Smith   ierr = DMGetGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr);
2877e87a4003SBarry Smith   ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr);
2878e87a4003SBarry Smith   ierr = DMGetGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr);
28797c927364SMatthew G. Knepley   ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr);
28807c927364SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr);
28819ac3fadcSMatthew G. Knepley   ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr);
28829ac3fadcSMatthew G. Knepley   cEnd = cEndInterior < 0 ? cEnd : cEndInterior;
2883e9d4ef1bSMatthew G. Knepley   ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr);
28846f3d3cbcSMatthew G. Knepley   ierr = PetscCalloc3(Nf,&feRef,Nf,&fvRef,Nf,&needAvg);CHKERRQ(ierr);
28857c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
288697c42addSMatthew G. Knepley     PetscObject  obj;
288797c42addSMatthew G. Knepley     PetscClassId id;
2888aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
28897c927364SMatthew G. Knepley 
289097c42addSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
289197c42addSMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
289297c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
289397c42addSMatthew G. Knepley       PetscFE    fe = (PetscFE) obj;
28946f3d3cbcSMatthew G. Knepley       PetscSpace sp;
28959b2fc754SMatthew G. Knepley       PetscInt   maxDegree;
289697c42addSMatthew G. Knepley 
28977c927364SMatthew G. Knepley       ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr);
28987c927364SMatthew G. Knepley       ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr);
28997c927364SMatthew G. Knepley       ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr);
29006f3d3cbcSMatthew G. Knepley       ierr = PetscFEGetBasisSpace(fe, &sp);CHKERRQ(ierr);
29019b2fc754SMatthew G. Knepley       ierr = PetscSpaceGetDegree(sp, NULL, &maxDegree);CHKERRQ(ierr);
29029b2fc754SMatthew G. Knepley       if (!maxDegree) needAvg[f] = PETSC_TRUE;
290397c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
290497c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV) obj;
290597c42addSMatthew G. Knepley       PetscDualSpace Q;
290697c42addSMatthew G. Knepley 
290797c42addSMatthew G. Knepley       ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr);
290897c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr);
290997c42addSMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(Q, &fNb);CHKERRQ(ierr);
291097c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
29116f3d3cbcSMatthew G. Knepley       needAvg[f] = PETSC_TRUE;
291297c42addSMatthew G. Knepley     }
2913d172c84bSMatthew G. Knepley     fTotDim += fNb;
29147c927364SMatthew G. Knepley   }
2915e9d4ef1bSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr);
29167c927364SMatthew G. Knepley   ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr);
29177c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
29187c927364SMatthew G. Knepley     PetscFE        feC;
291997c42addSMatthew G. Knepley     PetscFV        fvC;
29207c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
2921d172c84bSMatthew G. Knepley     PetscInt       order = -1, NcF, NcC, fpdim, cpdim;
29227c927364SMatthew G. Knepley 
292397c42addSMatthew G. Knepley     if (feRef[field]) {
2924e9d4ef1bSMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr);
29257c927364SMatthew G. Knepley       ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr);
29267c927364SMatthew G. Knepley       ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr);
29277c927364SMatthew G. Knepley       ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr);
2928d172c84bSMatthew G. Knepley       ierr = PetscDualSpaceGetOrder(QF, &order);CHKERRQ(ierr);
29297c927364SMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr);
29307c927364SMatthew G. Knepley       ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr);
29317c927364SMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr);
293297c42addSMatthew G. Knepley     } else {
293397c42addSMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC);CHKERRQ(ierr);
293497c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fvC, &NcC);CHKERRQ(ierr);
293597c42addSMatthew G. Knepley       ierr = PetscFVGetNumComponents(fvRef[field], &NcF);CHKERRQ(ierr);
293697c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvRef[field], &QF);CHKERRQ(ierr);
293797c42addSMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr);
293897c42addSMatthew G. Knepley       ierr = PetscFVGetDualSpace(fvC, &QC);CHKERRQ(ierr);
293997c42addSMatthew G. Knepley       ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr);
294097c42addSMatthew G. Knepley     }
294197c42addSMatthew G. Knepley     if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC);
29427c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
29437c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
2944d172c84bSMatthew G. Knepley       const PetscReal *cqpoints, *cqweights;
2945d172c84bSMatthew G. Knepley       PetscInt         NqcC, NpC;
294697c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
29477c927364SMatthew G. Knepley 
29487c927364SMatthew G. Knepley       ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr);
2949d172c84bSMatthew G. Knepley       ierr = PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights);CHKERRQ(ierr);
2950d172c84bSMatthew G. Knepley       if (NqcC != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %D must match number of field components", NqcC, NcC);
295197c42addSMatthew G. Knepley       if (NpC != 1 && feRef[field]) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
29527c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
29537c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
2954d172c84bSMatthew G. Knepley         const PetscReal *fqpoints, *fqweights;
29557c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
2956d172c84bSMatthew G. Knepley         PetscInt         NqcF, NpF;
29577c927364SMatthew G. Knepley 
29587c927364SMatthew G. Knepley         ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr);
2959d172c84bSMatthew G. Knepley         ierr = PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights);CHKERRQ(ierr);
2960d172c84bSMatthew G. Knepley         if (NqcF != NcF) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %D must match number of field components", NqcF, NcF);
29617c927364SMatthew G. Knepley         if (NpC != NpF) continue;
29627c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
29637c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
2964d172c84bSMatthew G. Knepley         for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d]*fqweights[d]);
2965d172c84bSMatthew G. Knepley         if (sum < 1.0e-9) continue;
2966d172c84bSMatthew G. Knepley         cmap[offsetC+c] = offsetF+f;
296797c42addSMatthew G. Knepley         found = PETSC_TRUE;
29687c927364SMatthew G. Knepley         break;
29697c927364SMatthew G. Knepley       }
297097c42addSMatthew G. Knepley       if (!found) {
297197c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
2972d172c84bSMatthew G. Knepley         if (fvRef[field] || (feRef[field] && order == 0)) {
2973d172c84bSMatthew G. Knepley           cmap[offsetC+c] = offsetF+0;
297497c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
297597c42addSMatthew G. Knepley       }
29767c927364SMatthew G. Knepley     }
2977d172c84bSMatthew G. Knepley     offsetC += cpdim;
2978d172c84bSMatthew G. Knepley     offsetF += fpdim;
29797c927364SMatthew G. Knepley   }
298097c42addSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);ierr = PetscFVDestroy(&fvRef[f]);CHKERRQ(ierr);}
29816f3d3cbcSMatthew G. Knepley   ierr = PetscFree3(feRef,fvRef,needAvg);CHKERRQ(ierr);
29827c927364SMatthew G. Knepley 
29837c927364SMatthew G. Knepley   ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr);
29847c927364SMatthew G. Knepley   ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr);
29850bd915a7SMatthew G. Knepley   ierr = VecGetOwnershipRange(cv, &startC, &endC);CHKERRQ(ierr);
29867c927364SMatthew G. Knepley   ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr);
29877c927364SMatthew G. Knepley   ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr);
2988aa7da3c4SMatthew G. Knepley   ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr);
2989aa7da3c4SMatthew G. Knepley   ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr);
29907c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
29917c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
29927c927364SMatthew G. Knepley     ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr);
29937c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
29940bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
29957c927364SMatthew G. Knepley       if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]);
29967c927364SMatthew G. Knepley       cindices[cellCIndices[d]-startC] = cellCIndices[d];
29977c927364SMatthew G. Knepley       findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]];
29987c927364SMatthew G. Knepley     }
29997c927364SMatthew G. Knepley   }
30007c927364SMatthew G. Knepley   ierr = PetscFree(cmap);CHKERRQ(ierr);
30017c927364SMatthew G. Knepley   ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr);
30027c927364SMatthew G. Knepley 
30037c927364SMatthew G. Knepley   ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr);
30047c927364SMatthew G. Knepley   ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr);
30059448b7f1SJunchao Zhang   ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr);
30067c927364SMatthew G. Knepley   ierr = ISDestroy(&cis);CHKERRQ(ierr);
30077c927364SMatthew G. Knepley   ierr = ISDestroy(&fis);CHKERRQ(ierr);
30087c927364SMatthew G. Knepley   ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr);
30097c927364SMatthew G. Knepley   ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr);
301075a69067SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr);
3011cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
3012cb1e1211SMatthew G Knepley }
3013a1cf66bbSMatthew G. Knepley 
30142f856554SMatthew G. Knepley /*@C
30152f856554SMatthew G. Knepley   DMPlexGetCellFields - Retrieve the field values values for a chunk of cells
30162f856554SMatthew G. Knepley 
30172f856554SMatthew G. Knepley   Input Parameters:
30182f856554SMatthew G. Knepley + dm     - The DM
30192f856554SMatthew G. Knepley . cellIS - The cells to include
30202f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
30212f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
30222f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
30232f856554SMatthew G. Knepley 
30242f856554SMatthew G. Knepley   Output Parameters:
30252f856554SMatthew G. Knepley + u   - The field coefficients
30262f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
30272f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
30282f856554SMatthew G. Knepley 
30292f856554SMatthew G. Knepley   Level: developer
30302f856554SMatthew G. Knepley 
30312f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields()
30322f856554SMatthew G. Knepley @*/
30332f856554SMatthew G. Knepley PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
30342f856554SMatthew G. Knepley {
30352f856554SMatthew G. Knepley   DM              plex, plexA = NULL;
30362f856554SMatthew G. Knepley   PetscSection    section, sectionAux;
30372f856554SMatthew G. Knepley   PetscDS         prob;
30382f856554SMatthew G. Knepley   const PetscInt *cells;
30392f856554SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, totDim, totDimAux, c;
30402f856554SMatthew G. Knepley   PetscErrorCode  ierr;
30412f856554SMatthew G. Knepley 
30422f856554SMatthew G. Knepley   PetscFunctionBegin;
30432f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
30442f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
30452f856554SMatthew G. Knepley   if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);}
30462f856554SMatthew G. Knepley   if (locA)   {PetscValidHeaderSpecific(locA, VEC_CLASSID, 6);}
30472f856554SMatthew G. Knepley   PetscValidPointer(u, 7);
30482f856554SMatthew G. Knepley   PetscValidPointer(u_t, 8);
30492f856554SMatthew G. Knepley   PetscValidPointer(a, 9);
30502f856554SMatthew G. Knepley   ierr = DMPlexConvertPlex(dm, &plex, PETSC_FALSE);CHKERRQ(ierr);
30512f856554SMatthew G. Knepley   ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr);
30522f856554SMatthew G. Knepley   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
30532f856554SMatthew G. Knepley   ierr = DMGetCellDS(dm, cStart, &prob);CHKERRQ(ierr);
30542f856554SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
30552f856554SMatthew G. Knepley   if (locA) {
30562f856554SMatthew G. Knepley     DM      dmAux;
30572f856554SMatthew G. Knepley     PetscDS probAux;
30582f856554SMatthew G. Knepley 
30592f856554SMatthew G. Knepley     ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr);
30602f856554SMatthew G. Knepley     ierr = DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE);CHKERRQ(ierr);
30612f856554SMatthew G. Knepley     ierr = DMGetSection(dmAux, &sectionAux);CHKERRQ(ierr);
30622f856554SMatthew G. Knepley     ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr);
30632f856554SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);
30642f856554SMatthew G. Knepley   }
30652f856554SMatthew G. Knepley   numCells = cEnd - cStart;
30662f856554SMatthew G. Knepley   ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u);CHKERRQ(ierr);
30672f856554SMatthew G. Knepley   if (locX_t) {ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u_t);CHKERRQ(ierr);} else {*u_t = NULL;}
30682f856554SMatthew G. Knepley   if (locA)   {ierr = DMGetWorkArray(dm, numCells*totDimAux, MPIU_SCALAR, a);CHKERRQ(ierr);} else {*a = NULL;}
30692f856554SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
30702f856554SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
30712f856554SMatthew G. Knepley     const PetscInt cind = c - cStart;
30722f856554SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a;
30732f856554SMatthew G. Knepley     PetscInt       i;
30742f856554SMatthew G. Knepley 
30752f856554SMatthew G. Knepley     ierr = DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x);CHKERRQ(ierr);
30762f856554SMatthew G. Knepley     for (i = 0; i < totDim; ++i) ul[cind*totDim+i] = x[i];
30772f856554SMatthew G. Knepley     ierr = DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x);CHKERRQ(ierr);
30782f856554SMatthew G. Knepley     if (locX_t) {
30792f856554SMatthew G. Knepley       ierr = DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t);CHKERRQ(ierr);
30802f856554SMatthew G. Knepley       for (i = 0; i < totDim; ++i) ul_t[cind*totDim+i] = x_t[i];
30812f856554SMatthew G. Knepley       ierr = DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t);CHKERRQ(ierr);
30822f856554SMatthew G. Knepley     }
30832f856554SMatthew G. Knepley     if (locA) {
30842f856554SMatthew G. Knepley       PetscInt subcell;
30852f856554SMatthew G. Knepley       ierr = DMPlexGetAuxiliaryPoint(plex, plexA, cell, &subcell);CHKERRQ(ierr);
30862f856554SMatthew G. Knepley       ierr = DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x);CHKERRQ(ierr);
30872f856554SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) al[cind*totDimAux+i] = x[i];
30882f856554SMatthew G. Knepley       ierr = DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x);CHKERRQ(ierr);
30892f856554SMatthew G. Knepley     }
30902f856554SMatthew G. Knepley   }
30912f856554SMatthew G. Knepley   ierr = DMDestroy(&plex);CHKERRQ(ierr);
30922f856554SMatthew G. Knepley   if (locA) {ierr = DMDestroy(&plexA);CHKERRQ(ierr);}
30932f856554SMatthew G. Knepley   ierr = ISRestorePointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr);
30942f856554SMatthew G. Knepley   PetscFunctionReturn(0);
30952f856554SMatthew G. Knepley }
30962f856554SMatthew G. Knepley 
30972f856554SMatthew G. Knepley /*@C
30982f856554SMatthew G. Knepley   DMPlexRestoreCellFields - Restore the field values values for a chunk of cells
30992f856554SMatthew G. Knepley 
31002f856554SMatthew G. Knepley   Input Parameters:
31012f856554SMatthew G. Knepley + dm     - The DM
31022f856554SMatthew G. Knepley . cellIS - The cells to include
31032f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
31042f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
31052f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
31062f856554SMatthew G. Knepley 
31072f856554SMatthew G. Knepley   Output Parameters:
31082f856554SMatthew G. Knepley + u   - The field coefficients
31092f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
31102f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
31112f856554SMatthew G. Knepley 
31122f856554SMatthew G. Knepley   Level: developer
31132f856554SMatthew G. Knepley 
31142f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields()
31152f856554SMatthew G. Knepley @*/
31162f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
31172f856554SMatthew G. Knepley {
31182f856554SMatthew G. Knepley   PetscErrorCode ierr;
31192f856554SMatthew G. Knepley 
31202f856554SMatthew G. Knepley   PetscFunctionBegin;
31212f856554SMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u);CHKERRQ(ierr);
31222f856554SMatthew G. Knepley   if (locX_t) {ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t);CHKERRQ(ierr);}
31232f856554SMatthew G. Knepley   if (locA)   {ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a);CHKERRQ(ierr);}
31242f856554SMatthew G. Knepley   PetscFunctionReturn(0);
31252f856554SMatthew G. Knepley }
31262f856554SMatthew G. Knepley 
31272f856554SMatthew G. Knepley /*@C
31282f856554SMatthew G. Knepley   DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces
31292f856554SMatthew G. Knepley 
31302f856554SMatthew G. Knepley   Input Parameters:
31312f856554SMatthew G. Knepley + dm     - The DM
31322f856554SMatthew G. Knepley . fStart - The first face to include
31332f856554SMatthew G. Knepley . fEnd   - The first face to exclude
31342f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
31352f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
31362f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
31372f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
31382f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL
31392f856554SMatthew G. Knepley 
31402f856554SMatthew G. Knepley   Output Parameters:
31412f856554SMatthew G. Knepley + Nface - The number of faces with field values
31422f856554SMatthew G. Knepley . uL - The field values at the left side of the face
31432f856554SMatthew G. Knepley - uR - The field values at the right side of the face
31442f856554SMatthew G. Knepley 
31452f856554SMatthew G. Knepley   Level: developer
31462f856554SMatthew G. Knepley 
31472f856554SMatthew G. Knepley .seealso: DMPlexGetCellFields()
31482f856554SMatthew G. Knepley @*/
31492f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
31502f856554SMatthew G. Knepley {
31512f856554SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad = NULL;
31522f856554SMatthew G. Knepley   PetscSection       section;
31532f856554SMatthew G. Knepley   PetscDS            prob;
31542f856554SMatthew G. Knepley   DMLabel            ghostLabel;
31552f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *x, *lgrad;
31562f856554SMatthew G. Knepley   PetscBool         *isFE;
31572f856554SMatthew G. Knepley   PetscInt           dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face;
31582f856554SMatthew G. Knepley   PetscErrorCode     ierr;
31592f856554SMatthew G. Knepley 
31602f856554SMatthew G. Knepley   PetscFunctionBegin;
31612f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
31622f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
31632f856554SMatthew G. Knepley   if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);}
31642f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6);
31652f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7);
31662f856554SMatthew G. Knepley   if (locGrad) {PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);}
31672f856554SMatthew G. Knepley   PetscValidPointer(uL, 9);
31682f856554SMatthew G. Knepley   PetscValidPointer(uR, 10);
31692f856554SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
31702f856554SMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
31712f856554SMatthew G. Knepley   ierr = DMGetSection(dm, &section);CHKERRQ(ierr);
31722f856554SMatthew G. Knepley   ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr);
31732f856554SMatthew G. Knepley   ierr = PetscDSGetTotalComponents(prob, &Nc);CHKERRQ(ierr);
31742f856554SMatthew G. Knepley   ierr = PetscMalloc1(Nf, &isFE);CHKERRQ(ierr);
31752f856554SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
31762f856554SMatthew G. Knepley     PetscObject  obj;
31772f856554SMatthew G. Knepley     PetscClassId id;
31782f856554SMatthew G. Knepley 
31792f856554SMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
31802f856554SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
31812f856554SMatthew G. Knepley     if (id == PETSCFE_CLASSID)      {isFE[f] = PETSC_TRUE;}
31822f856554SMatthew G. Knepley     else if (id == PETSCFV_CLASSID) {isFE[f] = PETSC_FALSE;}
31832f856554SMatthew G. Knepley     else                            {isFE[f] = PETSC_FALSE;}
31842f856554SMatthew G. Knepley   }
31852f856554SMatthew G. Knepley   ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr);
31862f856554SMatthew G. Knepley   ierr = VecGetArrayRead(locX, &x);CHKERRQ(ierr);
31872f856554SMatthew G. Knepley   ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr);
31882f856554SMatthew G. Knepley   ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
31892f856554SMatthew G. Knepley   ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr);
31902f856554SMatthew G. Knepley   ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);
31912f856554SMatthew G. Knepley   if (locGrad) {
31922f856554SMatthew G. Knepley     ierr = VecGetDM(locGrad, &dmGrad);CHKERRQ(ierr);
31932f856554SMatthew G. Knepley     ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr);
31942f856554SMatthew G. Knepley   }
31952f856554SMatthew G. Knepley   ierr = DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uL);CHKERRQ(ierr);
31962f856554SMatthew G. Knepley   ierr = DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uR);CHKERRQ(ierr);
31972f856554SMatthew G. Knepley   /* Right now just eat the extra work for FE (could make a cell loop) */
31982f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
31992f856554SMatthew G. Knepley     const PetscInt        *cells;
32002f856554SMatthew G. Knepley     PetscFVFaceGeom       *fg;
32012f856554SMatthew G. Knepley     PetscFVCellGeom       *cgL, *cgR;
32022f856554SMatthew G. Knepley     PetscScalar           *xL, *xR, *gL, *gR;
32032f856554SMatthew G. Knepley     PetscScalar           *uLl = *uL, *uRl = *uR;
32042f856554SMatthew G. Knepley     PetscInt               ghost, nsupp, nchild;
32052f856554SMatthew G. Knepley 
32062f856554SMatthew G. Knepley     ierr = DMLabelGetValue(ghostLabel, face, &ghost);CHKERRQ(ierr);
32072f856554SMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, face, &nsupp);CHKERRQ(ierr);
32082f856554SMatthew G. Knepley     ierr = DMPlexGetTreeChildren(dm, face, &nchild, NULL);CHKERRQ(ierr);
32092f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
32102f856554SMatthew G. Knepley     ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr);
32112f856554SMatthew G. Knepley     ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr);
32122f856554SMatthew G. Knepley     ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL);CHKERRQ(ierr);
32132f856554SMatthew G. Knepley     ierr = DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR);CHKERRQ(ierr);
32142f856554SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
32152f856554SMatthew G. Knepley       PetscInt off;
32162f856554SMatthew G. Knepley 
32172f856554SMatthew G. Knepley       ierr = PetscDSGetComponentOffset(prob, f, &off);CHKERRQ(ierr);
32182f856554SMatthew G. Knepley       if (isFE[f]) {
32192f856554SMatthew G. Knepley         const PetscInt *cone;
32202f856554SMatthew G. Knepley         PetscInt        comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d;
32212f856554SMatthew G. Knepley 
32222f856554SMatthew G. Knepley         xL = xR = NULL;
32232f856554SMatthew G. Knepley         ierr = PetscSectionGetFieldComponents(section, f, &comp);CHKERRQ(ierr);
32242f856554SMatthew G. Knepley         ierr = DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL);CHKERRQ(ierr);
32252f856554SMatthew G. Knepley         ierr = DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR);CHKERRQ(ierr);
32262f856554SMatthew G. Knepley         ierr = DMPlexGetCone(dm, cells[0], &cone);CHKERRQ(ierr);
32272f856554SMatthew G. Knepley         ierr = DMPlexGetConeSize(dm, cells[0], &coneSizeL);CHKERRQ(ierr);
32282f856554SMatthew G. Knepley         for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) if (cone[faceLocL] == face) break;
32292f856554SMatthew G. Knepley         ierr = DMPlexGetCone(dm, cells[1], &cone);CHKERRQ(ierr);
32302f856554SMatthew G. Knepley         ierr = DMPlexGetConeSize(dm, cells[1], &coneSizeR);CHKERRQ(ierr);
32312f856554SMatthew G. Knepley         for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) if (cone[faceLocR] == face) break;
32322f856554SMatthew G. Knepley         if (faceLocL == coneSizeL && faceLocR == coneSizeR) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %d in cone of cell %d or cell %d", face, cells[0], cells[1]);
32332f856554SMatthew G. Knepley         /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */
32342f856554SMatthew G. Knepley         /* TODO: this is a hack that might not be right for nonconforming */
32352f856554SMatthew G. Knepley         if (faceLocL < coneSizeL) {
32362f856554SMatthew G. Knepley           ierr = EvaluateFaceFields(prob, f, faceLocL, xL, &uLl[iface*Nc+off]);CHKERRQ(ierr);
32372f856554SMatthew G. Knepley           if (rdof == ldof && faceLocR < coneSizeR) {ierr = EvaluateFaceFields(prob, f, faceLocR, xR, &uRl[iface*Nc+off]);CHKERRQ(ierr);}
32382f856554SMatthew G. Knepley           else              {for(d = 0; d < comp; ++d) uRl[iface*Nc+off+d] = uLl[iface*Nc+off+d];}
32392f856554SMatthew G. Knepley         }
32402f856554SMatthew G. Knepley         else {
32412f856554SMatthew G. Knepley           ierr = EvaluateFaceFields(prob, f, faceLocR, xR, &uRl[iface*Nc+off]);CHKERRQ(ierr);
32422f856554SMatthew G. Knepley           ierr = PetscSectionGetFieldComponents(section, f, &comp);CHKERRQ(ierr);
32432f856554SMatthew G. Knepley           for(d = 0; d < comp; ++d) uLl[iface*Nc+off+d] = uRl[iface*Nc+off+d];
32442f856554SMatthew G. Knepley         }
32452f856554SMatthew G. Knepley         ierr = DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL);CHKERRQ(ierr);
32462f856554SMatthew G. Knepley         ierr = DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR);CHKERRQ(ierr);
32472f856554SMatthew G. Knepley       } else {
32482f856554SMatthew G. Knepley         PetscFV  fv;
32492f856554SMatthew G. Knepley         PetscInt numComp, c;
32502f856554SMatthew G. Knepley 
32512f856554SMatthew G. Knepley         ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fv);CHKERRQ(ierr);
32522f856554SMatthew G. Knepley         ierr = PetscFVGetNumComponents(fv, &numComp);CHKERRQ(ierr);
32532f856554SMatthew G. Knepley         ierr = DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL);CHKERRQ(ierr);
32542f856554SMatthew G. Knepley         ierr = DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR);CHKERRQ(ierr);
32552f856554SMatthew G. Knepley         if (dmGrad) {
32562f856554SMatthew G. Knepley           PetscReal dxL[3], dxR[3];
32572f856554SMatthew G. Knepley 
32582f856554SMatthew G. Knepley           ierr = DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL);CHKERRQ(ierr);
32592f856554SMatthew G. Knepley           ierr = DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR);CHKERRQ(ierr);
32602f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL);
32612f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR);
32622f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
32632f856554SMatthew G. Knepley             uLl[iface*Nc+off+c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c*dim], dxL);
32642f856554SMatthew G. Knepley             uRl[iface*Nc+off+c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c*dim], dxR);
32652f856554SMatthew G. Knepley           }
32662f856554SMatthew G. Knepley         } else {
32672f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
32682f856554SMatthew G. Knepley             uLl[iface*Nc+off+c] = xL[c];
32692f856554SMatthew G. Knepley             uRl[iface*Nc+off+c] = xR[c];
32702f856554SMatthew G. Knepley           }
32712f856554SMatthew G. Knepley         }
32722f856554SMatthew G. Knepley       }
32732f856554SMatthew G. Knepley     }
32742f856554SMatthew G. Knepley     ++iface;
32752f856554SMatthew G. Knepley   }
32762f856554SMatthew G. Knepley   *Nface = iface;
32772f856554SMatthew G. Knepley   ierr = VecRestoreArrayRead(locX, &x);CHKERRQ(ierr);
32782f856554SMatthew G. Knepley   ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
32792f856554SMatthew G. Knepley   ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);
32802f856554SMatthew G. Knepley   if (locGrad) {
32812f856554SMatthew G. Knepley     ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr);
32822f856554SMatthew G. Knepley   }
32832f856554SMatthew G. Knepley   ierr = PetscFree(isFE);CHKERRQ(ierr);
32842f856554SMatthew G. Knepley   PetscFunctionReturn(0);
32852f856554SMatthew G. Knepley }
32862f856554SMatthew G. Knepley 
32872f856554SMatthew G. Knepley /*@C
32882f856554SMatthew G. Knepley   DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces
32892f856554SMatthew G. Knepley 
32902f856554SMatthew G. Knepley   Input Parameters:
32912f856554SMatthew G. Knepley + dm     - The DM
32922f856554SMatthew G. Knepley . fStart - The first face to include
32932f856554SMatthew G. Knepley . fEnd   - The first face to exclude
32942f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
32952f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
32962f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
32972f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
32982f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL
32992f856554SMatthew G. Knepley 
33002f856554SMatthew G. Knepley   Output Parameters:
33012f856554SMatthew G. Knepley + Nface - The number of faces with field values
33022f856554SMatthew G. Knepley . uL - The field values at the left side of the face
33032f856554SMatthew G. Knepley - uR - The field values at the right side of the face
33042f856554SMatthew G. Knepley 
33052f856554SMatthew G. Knepley   Level: developer
33062f856554SMatthew G. Knepley 
33072f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields()
33082f856554SMatthew G. Knepley @*/
33092f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
33102f856554SMatthew G. Knepley {
33112f856554SMatthew G. Knepley   PetscErrorCode ierr;
33122f856554SMatthew G. Knepley 
33132f856554SMatthew G. Knepley   PetscFunctionBegin;
33142f856554SMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL);CHKERRQ(ierr);
33152f856554SMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR);CHKERRQ(ierr);
33162f856554SMatthew G. Knepley   PetscFunctionReturn(0);
33172f856554SMatthew G. Knepley }
33182f856554SMatthew G. Knepley 
33192f856554SMatthew G. Knepley /*@C
33202f856554SMatthew G. Knepley   DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces
33212f856554SMatthew G. Knepley 
33222f856554SMatthew G. Knepley   Input Parameters:
33232f856554SMatthew G. Knepley + dm     - The DM
33242f856554SMatthew G. Knepley . fStart - The first face to include
33252f856554SMatthew G. Knepley . fEnd   - The first face to exclude
33262f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
33272f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
33282f856554SMatthew G. Knepley 
33292f856554SMatthew G. Knepley   Output Parameters:
33302f856554SMatthew G. Knepley + Nface - The number of faces with field values
33312f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
33322f856554SMatthew G. Knepley - vol   - The cell volume
33332f856554SMatthew G. Knepley 
33342f856554SMatthew G. Knepley   Level: developer
33352f856554SMatthew G. Knepley 
33362f856554SMatthew G. Knepley .seealso: DMPlexGetCellFields()
33372f856554SMatthew G. Knepley @*/
33382f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
33392f856554SMatthew G. Knepley {
33402f856554SMatthew G. Knepley   DM                 dmFace, dmCell;
33412f856554SMatthew G. Knepley   DMLabel            ghostLabel;
33422f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom;
33432f856554SMatthew G. Knepley   PetscInt           dim, numFaces = fEnd - fStart, iface, face;
33442f856554SMatthew G. Knepley   PetscErrorCode     ierr;
33452f856554SMatthew G. Knepley 
33462f856554SMatthew G. Knepley   PetscFunctionBegin;
33472f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
33482f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4);
33492f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5);
33502f856554SMatthew G. Knepley   PetscValidPointer(fgeom, 6);
33512f856554SMatthew G. Knepley   PetscValidPointer(vol, 7);
33522f856554SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
33532f856554SMatthew G. Knepley   ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr);
33542f856554SMatthew G. Knepley   ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr);
33552f856554SMatthew G. Knepley   ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
33562f856554SMatthew G. Knepley   ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr);
33572f856554SMatthew G. Knepley   ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);
33582f856554SMatthew G. Knepley   ierr = PetscMalloc1(numFaces, fgeom);CHKERRQ(ierr);
33592f856554SMatthew G. Knepley   ierr = DMGetWorkArray(dm, numFaces*2, MPIU_SCALAR, vol);CHKERRQ(ierr);
33602f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
33612f856554SMatthew G. Knepley     const PetscInt        *cells;
33622f856554SMatthew G. Knepley     PetscFVFaceGeom       *fg;
33632f856554SMatthew G. Knepley     PetscFVCellGeom       *cgL, *cgR;
33642f856554SMatthew G. Knepley     PetscFVFaceGeom       *fgeoml = *fgeom;
33652f856554SMatthew G. Knepley     PetscReal             *voll   = *vol;
33662f856554SMatthew G. Knepley     PetscInt               ghost, d, nchild, nsupp;
33672f856554SMatthew G. Knepley 
33682f856554SMatthew G. Knepley     ierr = DMLabelGetValue(ghostLabel, face, &ghost);CHKERRQ(ierr);
33692f856554SMatthew G. Knepley     ierr = DMPlexGetSupportSize(dm, face, &nsupp);CHKERRQ(ierr);
33702f856554SMatthew G. Knepley     ierr = DMPlexGetTreeChildren(dm, face, &nchild, NULL);CHKERRQ(ierr);
33712f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
33722f856554SMatthew G. Knepley     ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr);
33732f856554SMatthew G. Knepley     ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr);
33742f856554SMatthew G. Knepley     ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL);CHKERRQ(ierr);
33752f856554SMatthew G. Knepley     ierr = DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR);CHKERRQ(ierr);
33762f856554SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
33772f856554SMatthew G. Knepley       fgeoml[iface].centroid[d] = fg->centroid[d];
33782f856554SMatthew G. Knepley       fgeoml[iface].normal[d]   = fg->normal[d];
33792f856554SMatthew G. Knepley     }
33802f856554SMatthew G. Knepley     voll[iface*2+0] = cgL->volume;
33812f856554SMatthew G. Knepley     voll[iface*2+1] = cgR->volume;
33822f856554SMatthew G. Knepley     ++iface;
33832f856554SMatthew G. Knepley   }
33842f856554SMatthew G. Knepley   *Nface = iface;
33852f856554SMatthew G. Knepley   ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr);
33862f856554SMatthew G. Knepley   ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);
33872f856554SMatthew G. Knepley   PetscFunctionReturn(0);
33882f856554SMatthew G. Knepley }
33892f856554SMatthew G. Knepley 
33902f856554SMatthew G. Knepley /*@C
33912f856554SMatthew G. Knepley   DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces
33922f856554SMatthew G. Knepley 
33932f856554SMatthew G. Knepley   Input Parameters:
33942f856554SMatthew G. Knepley + dm     - The DM
33952f856554SMatthew G. Knepley . fStart - The first face to include
33962f856554SMatthew G. Knepley . fEnd   - The first face to exclude
33972f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
33982f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
33992f856554SMatthew G. Knepley 
34002f856554SMatthew G. Knepley   Output Parameters:
34012f856554SMatthew G. Knepley + Nface - The number of faces with field values
34022f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
34032f856554SMatthew G. Knepley - vol   - The cell volume
34042f856554SMatthew G. Knepley 
34052f856554SMatthew G. Knepley   Level: developer
34062f856554SMatthew G. Knepley 
34072f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields()
34082f856554SMatthew G. Knepley @*/
34092f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
34102f856554SMatthew G. Knepley {
34112f856554SMatthew G. Knepley   PetscErrorCode ierr;
34122f856554SMatthew G. Knepley 
34132f856554SMatthew G. Knepley   PetscFunctionBegin;
34142f856554SMatthew G. Knepley   ierr = PetscFree(*fgeom);CHKERRQ(ierr);
34152f856554SMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, 0, MPIU_REAL, vol);CHKERRQ(ierr);
34162f856554SMatthew G. Knepley   PetscFunctionReturn(0);
34172f856554SMatthew G. Knepley }
34182f856554SMatthew G. Knepley 
3419a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3420a1cf66bbSMatthew G. Knepley {
3421a1cf66bbSMatthew G. Knepley   char            composeStr[33] = {0};
3422a1cf66bbSMatthew G. Knepley   PetscObjectId   id;
3423a1cf66bbSMatthew G. Knepley   PetscContainer  container;
3424a1cf66bbSMatthew G. Knepley   PetscErrorCode  ierr;
3425a1cf66bbSMatthew G. Knepley 
3426a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
3427a1cf66bbSMatthew G. Knepley   ierr = PetscObjectGetId((PetscObject)quad,&id);CHKERRQ(ierr);
3428a1cf66bbSMatthew G. Knepley   ierr = PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%x\n", id);CHKERRQ(ierr);
3429a1cf66bbSMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container);CHKERRQ(ierr);
3430a1cf66bbSMatthew G. Knepley   if (container) {
3431a1cf66bbSMatthew G. Knepley     ierr = PetscContainerGetPointer(container, (void **) geom);CHKERRQ(ierr);
3432a1cf66bbSMatthew G. Knepley   } else {
3433a1cf66bbSMatthew G. Knepley     ierr = DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom);CHKERRQ(ierr);
3434a1cf66bbSMatthew G. Knepley     ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr);
3435a1cf66bbSMatthew G. Knepley     ierr = PetscContainerSetPointer(container, (void *) *geom);CHKERRQ(ierr);
3436a1cf66bbSMatthew G. Knepley     ierr = PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom);CHKERRQ(ierr);
3437a1cf66bbSMatthew G. Knepley     ierr = PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container);CHKERRQ(ierr);
3438a1cf66bbSMatthew G. Knepley     ierr = PetscContainerDestroy(&container);CHKERRQ(ierr);
3439a1cf66bbSMatthew G. Knepley   }
3440a1cf66bbSMatthew G. Knepley   PetscFunctionReturn(0);
3441a1cf66bbSMatthew G. Knepley }
3442a1cf66bbSMatthew G. Knepley 
3443a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3444a1cf66bbSMatthew G. Knepley {
3445a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
3446a1cf66bbSMatthew G. Knepley   *geom = NULL;
3447a1cf66bbSMatthew G. Knepley   PetscFunctionReturn(0);
3448a1cf66bbSMatthew G. Knepley }
3449a1cf66bbSMatthew G. Knepley 
345092d50984SMatthew G. Knepley PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user)
345192d50984SMatthew G. Knepley {
345292d50984SMatthew G. Knepley   DM_Plex         *mesh       = (DM_Plex *) dm->data;
345392d50984SMatthew G. Knepley   const char      *name       = "Residual";
345492d50984SMatthew G. Knepley   DM               dmAux      = NULL;
345592d50984SMatthew G. Knepley   DMLabel          ghostLabel = NULL;
345692d50984SMatthew G. Knepley   PetscDS          prob       = NULL;
345792d50984SMatthew G. Knepley   PetscDS          probAux    = NULL;
345892d50984SMatthew G. Knepley   PetscBool        useFEM     = PETSC_FALSE;
345992d50984SMatthew G. Knepley   PetscBool        isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
346092d50984SMatthew G. Knepley   DMField          coordField = NULL;
3461c0006e53SPatrick Farrell   Vec              locA;
3462c0006e53SPatrick Farrell   PetscScalar     *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL;
346392d50984SMatthew G. Knepley   IS               chunkIS;
346492d50984SMatthew G. Knepley   const PetscInt  *cells;
346592d50984SMatthew G. Knepley   PetscInt         cStart, cEnd, numCells;
3466364207b6SKarl Rupp   PetscInt         Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd;
346792d50984SMatthew G. Knepley   PetscInt         maxDegree = PETSC_MAX_INT;
346892d50984SMatthew G. Knepley   PetscQuadrature  affineQuad = NULL, *quads = NULL;
346992d50984SMatthew G. Knepley   PetscFEGeom     *affineGeom = NULL, **geoms = NULL;
347092d50984SMatthew G. Knepley   PetscErrorCode   ierr;
347192d50984SMatthew G. Knepley 
347292d50984SMatthew G. Knepley   PetscFunctionBegin;
347392d50984SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_ResidualFEM,dm,0,0,0);CHKERRQ(ierr);
347492d50984SMatthew G. Knepley   /* FEM+FVM */
347592d50984SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
347692d50984SMatthew G. Knepley   ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr);
347792d50984SMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
347892d50984SMatthew G. Knepley   ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr);
347992d50984SMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
348092d50984SMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr);
348192d50984SMatthew G. Knepley   if (locA) {
348292d50984SMatthew G. Knepley     ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr);
348392d50984SMatthew G. Knepley     ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr);
348492d50984SMatthew G. Knepley     ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);
348592d50984SMatthew G. Knepley   }
348692d50984SMatthew G. Knepley   /* 2: Get geometric data */
348792d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
348892d50984SMatthew G. Knepley     PetscObject  obj;
348992d50984SMatthew G. Knepley     PetscClassId id;
349092d50984SMatthew G. Knepley     PetscBool    fimp;
349192d50984SMatthew G. Knepley 
349292d50984SMatthew G. Knepley     ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr);
349392d50984SMatthew G. Knepley     if (isImplicit != fimp) continue;
349492d50984SMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
349592d50984SMatthew G. Knepley     ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
349692d50984SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {useFEM = PETSC_TRUE;}
3497364207b6SKarl Rupp     if (id == PETSCFV_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Use of FVM with PCPATCH not yet implemented");
349892d50984SMatthew G. Knepley   }
349992d50984SMatthew G. Knepley   if (useFEM) {
350092d50984SMatthew G. Knepley     ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr);
350192d50984SMatthew G. Knepley     ierr = DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree);CHKERRQ(ierr);
350292d50984SMatthew G. Knepley     if (maxDegree <= 1) {
350392d50984SMatthew G. Knepley       ierr = DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad);CHKERRQ(ierr);
350492d50984SMatthew G. Knepley       if (affineQuad) {
350592d50984SMatthew G. Knepley         ierr = DMSNESGetFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom);CHKERRQ(ierr);
350692d50984SMatthew G. Knepley       }
350792d50984SMatthew G. Knepley     } else {
350892d50984SMatthew G. Knepley       ierr = PetscCalloc2(Nf,&quads,Nf,&geoms);CHKERRQ(ierr);
350992d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
351092d50984SMatthew G. Knepley         PetscObject  obj;
351192d50984SMatthew G. Knepley         PetscClassId id;
351292d50984SMatthew G. Knepley         PetscBool    fimp;
351392d50984SMatthew G. Knepley 
351492d50984SMatthew G. Knepley         ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr);
351592d50984SMatthew G. Knepley         if (isImplicit != fimp) continue;
351692d50984SMatthew G. Knepley         ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
351792d50984SMatthew G. Knepley         ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
351892d50984SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
351992d50984SMatthew G. Knepley           PetscFE fe = (PetscFE) obj;
352092d50984SMatthew G. Knepley 
352192d50984SMatthew G. Knepley           ierr = PetscFEGetQuadrature(fe, &quads[f]);CHKERRQ(ierr);
352292d50984SMatthew G. Knepley           ierr = PetscObjectReference((PetscObject)quads[f]);CHKERRQ(ierr);
352392d50984SMatthew G. Knepley           ierr = DMSNESGetFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f]);CHKERRQ(ierr);
352492d50984SMatthew G. Knepley         }
352592d50984SMatthew G. Knepley       }
352692d50984SMatthew G. Knepley     }
352792d50984SMatthew G. Knepley   }
352892d50984SMatthew G. Knepley   /* Loop over chunks */
352992d50984SMatthew G. Knepley   ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr);
353092d50984SMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr);
353192d50984SMatthew G. Knepley   if (useFEM) {ierr = ISCreate(PETSC_COMM_SELF, &chunkIS);CHKERRQ(ierr);}
353292d50984SMatthew G. Knepley   numCells      = cEnd - cStart;
353392d50984SMatthew G. Knepley   numChunks     = 1;
353492d50984SMatthew G. Knepley   cellChunkSize = numCells/numChunks;
353592d50984SMatthew G. Knepley   numChunks     = PetscMin(1,numCells);
353692d50984SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
3537c0006e53SPatrick Farrell     PetscScalar     *elemVec, *fluxL = NULL, *fluxR = NULL;
3538c0006e53SPatrick Farrell     PetscReal       *vol = NULL;
3539c0006e53SPatrick Farrell     PetscFVFaceGeom *fgeom = NULL;
354092d50984SMatthew G. Knepley     PetscInt         cS = cStart+chunk*cellChunkSize, cE = PetscMin(cS+cellChunkSize, cEnd), numCells = cE - cS, c;
3541c0006e53SPatrick Farrell     PetscInt         numFaces = 0;
354292d50984SMatthew G. Knepley 
354392d50984SMatthew G. Knepley     /* Extract field coefficients */
354492d50984SMatthew G. Knepley     if (useFEM) {
354592d50984SMatthew G. Knepley       ierr = ISGetPointSubrange(chunkIS, cS, cE, cells);CHKERRQ(ierr);
354692d50984SMatthew G. Knepley       ierr = DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a);CHKERRQ(ierr);
354792d50984SMatthew G. Knepley       ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec);CHKERRQ(ierr);
354892d50984SMatthew G. Knepley       ierr = PetscMemzero(elemVec, numCells*totDim * sizeof(PetscScalar));CHKERRQ(ierr);
354992d50984SMatthew G. Knepley     }
355092d50984SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
355192d50984SMatthew G. Knepley     /* Loop over fields */
355292d50984SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
355392d50984SMatthew G. Knepley       PetscObject  obj;
355492d50984SMatthew G. Knepley       PetscClassId id;
355592d50984SMatthew G. Knepley       PetscBool    fimp;
355692d50984SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
355792d50984SMatthew G. Knepley 
355892d50984SMatthew G. Knepley       ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr);
355992d50984SMatthew G. Knepley       if (isImplicit != fimp) continue;
356092d50984SMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
356192d50984SMatthew G. Knepley       ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
356292d50984SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
356392d50984SMatthew G. Knepley         PetscFE         fe = (PetscFE) obj;
356492d50984SMatthew G. Knepley         PetscFEGeom    *geom = affineGeom ? affineGeom : geoms[f];
356592d50984SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
356692d50984SMatthew G. Knepley         PetscQuadrature quad = affineQuad ? affineQuad : quads[f];
356792d50984SMatthew G. Knepley         PetscInt        Nq, Nb;
356892d50984SMatthew G. Knepley 
356992d50984SMatthew G. Knepley         ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr);
357092d50984SMatthew G. Knepley         ierr = PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr);
357192d50984SMatthew G. Knepley         ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr);
357292d50984SMatthew G. Knepley         blockSize = Nb;
357392d50984SMatthew G. Knepley         batchSize = numBlocks * blockSize;
357492d50984SMatthew G. Knepley         ierr      = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr);
357592d50984SMatthew G. Knepley         numChunks = numCells / (numBatches*batchSize);
357692d50984SMatthew G. Knepley         Ne        = numChunks*numBatches*batchSize;
357792d50984SMatthew G. Knepley         Nr        = numCells % (numBatches*batchSize);
357892d50984SMatthew G. Knepley         offset    = numCells - Nr;
357992d50984SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
358092d50984SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
358192d50984SMatthew G. Knepley         ierr = PetscFEGeomGetChunk(geom,0,offset,&chunkGeom);CHKERRQ(ierr);
358292d50984SMatthew G. Knepley         ierr = PetscFEIntegrateResidual(fe, prob, f, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec);CHKERRQ(ierr);
358392d50984SMatthew G. Knepley         ierr = PetscFEGeomGetChunk(geom,offset,numCells,&chunkGeom);CHKERRQ(ierr);
358492d50984SMatthew G. Knepley         ierr = PetscFEIntegrateResidual(fe, prob, f, Nr, chunkGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, &elemVec[offset*totDim]);CHKERRQ(ierr);
358592d50984SMatthew G. Knepley         ierr = PetscFEGeomRestoreChunk(geom,offset,numCells,&chunkGeom);CHKERRQ(ierr);
358692d50984SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
358792d50984SMatthew G. Knepley         PetscFV fv = (PetscFV) obj;
358892d50984SMatthew G. Knepley 
358992d50984SMatthew G. Knepley         Ne = numFaces;
359092d50984SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
359192d50984SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
359292d50984SMatthew G. Knepley         ierr = PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR);CHKERRQ(ierr);
359392d50984SMatthew G. Knepley       } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f);
359492d50984SMatthew G. Knepley     }
359592d50984SMatthew G. Knepley     /* Loop over domain */
359692d50984SMatthew G. Knepley     if (useFEM) {
359792d50984SMatthew G. Knepley       /* Add elemVec to locX */
359892d50984SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
359992d50984SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
360092d50984SMatthew G. Knepley         const PetscInt cind = c - cStart;
360192d50984SMatthew G. Knepley 
360292d50984SMatthew G. Knepley         if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, name, totDim, &elemVec[cind*totDim]);CHKERRQ(ierr);}
360392d50984SMatthew G. Knepley         if (ghostLabel) {
360492d50984SMatthew G. Knepley           PetscInt ghostVal;
360592d50984SMatthew G. Knepley 
360692d50984SMatthew G. Knepley           ierr = DMLabelGetValue(ghostLabel,cell,&ghostVal);CHKERRQ(ierr);
360792d50984SMatthew G. Knepley           if (ghostVal > 0) continue;
360892d50984SMatthew G. Knepley         }
360992d50984SMatthew G. Knepley         ierr = DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind*totDim], ADD_ALL_VALUES);CHKERRQ(ierr);
361092d50984SMatthew G. Knepley       }
361192d50984SMatthew G. Knepley     }
361292d50984SMatthew G. Knepley     /* Handle time derivative */
361392d50984SMatthew G. Knepley     if (locX_t) {
361492d50984SMatthew G. Knepley       PetscScalar *x_t, *fa;
361592d50984SMatthew G. Knepley 
361692d50984SMatthew G. Knepley       ierr = VecGetArray(locF, &fa);CHKERRQ(ierr);
361792d50984SMatthew G. Knepley       ierr = VecGetArray(locX_t, &x_t);CHKERRQ(ierr);
361892d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
361992d50984SMatthew G. Knepley         PetscFV      fv;
362092d50984SMatthew G. Knepley         PetscObject  obj;
362192d50984SMatthew G. Knepley         PetscClassId id;
362292d50984SMatthew G. Knepley         PetscInt     pdim, d;
362392d50984SMatthew G. Knepley 
362492d50984SMatthew G. Knepley         ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr);
362592d50984SMatthew G. Knepley         ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr);
362692d50984SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
362792d50984SMatthew G. Knepley         fv   = (PetscFV) obj;
362892d50984SMatthew G. Knepley         ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr);
362992d50984SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
363092d50984SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
363192d50984SMatthew G. Knepley           PetscScalar   *u_t, *r;
363292d50984SMatthew G. Knepley 
363392d50984SMatthew G. Knepley           if (ghostLabel) {
363492d50984SMatthew G. Knepley             PetscInt ghostVal;
363592d50984SMatthew G. Knepley 
363692d50984SMatthew G. Knepley             ierr = DMLabelGetValue(ghostLabel, cell, &ghostVal);CHKERRQ(ierr);
363792d50984SMatthew G. Knepley             if (ghostVal > 0) continue;
363892d50984SMatthew G. Knepley           }
363992d50984SMatthew G. Knepley           ierr = DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t);CHKERRQ(ierr);
364092d50984SMatthew G. Knepley           ierr = DMPlexPointLocalFieldRef(dm, cell, f, fa, &r);CHKERRQ(ierr);
364192d50984SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
364292d50984SMatthew G. Knepley         }
364392d50984SMatthew G. Knepley       }
364492d50984SMatthew G. Knepley       ierr = VecRestoreArray(locX_t, &x_t);CHKERRQ(ierr);
364592d50984SMatthew G. Knepley       ierr = VecRestoreArray(locF, &fa);CHKERRQ(ierr);
364692d50984SMatthew G. Knepley     }
364792d50984SMatthew G. Knepley     if (useFEM) {
364892d50984SMatthew G. Knepley       ierr = DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a);CHKERRQ(ierr);
364992d50984SMatthew G. Knepley       ierr = DMRestoreWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec);CHKERRQ(ierr);
365092d50984SMatthew G. Knepley     }
365192d50984SMatthew G. Knepley   }
365292d50984SMatthew G. Knepley   if (useFEM) {ierr = ISDestroy(&chunkIS);CHKERRQ(ierr);}
365392d50984SMatthew G. Knepley   ierr = ISRestorePointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr);
365492d50984SMatthew G. Knepley   /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */
365592d50984SMatthew G. Knepley   if (useFEM) {
365692d50984SMatthew G. Knepley     if (maxDegree <= 1) {
365792d50984SMatthew G. Knepley       ierr = DMSNESRestoreFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom);CHKERRQ(ierr);
365892d50984SMatthew G. Knepley       ierr = PetscQuadratureDestroy(&affineQuad);CHKERRQ(ierr);
365992d50984SMatthew G. Knepley     } else {
366092d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
366192d50984SMatthew G. Knepley         ierr = DMSNESRestoreFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f]);CHKERRQ(ierr);
366292d50984SMatthew G. Knepley         ierr = PetscQuadratureDestroy(&quads[f]);CHKERRQ(ierr);
366392d50984SMatthew G. Knepley       }
366492d50984SMatthew G. Knepley       ierr = PetscFree2(quads,geoms);CHKERRQ(ierr);
366592d50984SMatthew G. Knepley     }
366692d50984SMatthew G. Knepley   }
366792d50984SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_ResidualFEM,dm,0,0,0);CHKERRQ(ierr);
366892d50984SMatthew G. Knepley   PetscFunctionReturn(0);
366992d50984SMatthew G. Knepley }
367092d50984SMatthew G. Knepley 
3671a1cf66bbSMatthew G. Knepley /*
3672a1cf66bbSMatthew G. Knepley   We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac
3673a1cf66bbSMatthew G. Knepley 
3674a1cf66bbSMatthew G. Knepley   X   - The local solution vector
3675a1cf66bbSMatthew G. Knepley   X_t - The local solution time derviative vector, or NULL
3676a1cf66bbSMatthew G. Knepley */
3677a1cf66bbSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS,
3678a1cf66bbSMatthew G. Knepley                                                     PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx)
3679a1cf66bbSMatthew G. Knepley {
3680a1cf66bbSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *) dm->data;
3681a1cf66bbSMatthew G. Knepley   const char      *name = "Jacobian", *nameP = "JacobianPre";
3682a1cf66bbSMatthew G. Knepley   DM               dmAux = NULL;
3683a1cf66bbSMatthew G. Knepley   PetscDS          prob,   probAux = NULL;
3684a1cf66bbSMatthew G. Knepley   PetscSection     sectionAux = NULL;
3685a1cf66bbSMatthew G. Knepley   Vec              A;
3686a1cf66bbSMatthew G. Knepley   DMField          coordField;
3687a1cf66bbSMatthew G. Knepley   PetscFEGeom     *cgeomFEM;
3688a1cf66bbSMatthew G. Knepley   PetscQuadrature  qGeom = NULL;
3689a1cf66bbSMatthew G. Knepley   Mat              J = Jac, JP = JacP;
3690a1cf66bbSMatthew G. Knepley   PetscScalar     *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL;
36919b2fc754SMatthew G. Knepley   PetscBool        hasJac, hasPrec, hasDyn, assembleJac, isMatIS, isMatISP, *isFE, hasFV = PETSC_FALSE;
3692a1cf66bbSMatthew G. Knepley   const PetscInt  *cells;
36939b2fc754SMatthew G. Knepley   PetscInt         Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0;
3694a1cf66bbSMatthew G. Knepley   PetscErrorCode   ierr;
3695a1cf66bbSMatthew G. Knepley 
3696a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
3697a1cf66bbSMatthew G. Knepley   CHKMEMQ;
3698a1cf66bbSMatthew G. Knepley   ierr = ISGetLocalSize(cellIS, &numCells);CHKERRQ(ierr);
3699a1cf66bbSMatthew G. Knepley   ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr);
3700a1cf66bbSMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_JacobianFEM,dm,0,0,0);CHKERRQ(ierr);
3701a1cf66bbSMatthew G. Knepley   ierr = DMGetDS(dm, &prob);CHKERRQ(ierr);
3702a1cf66bbSMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr);
3703a1cf66bbSMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr);
3704a1cf66bbSMatthew G. Knepley   if (dmAux) {
3705a1cf66bbSMatthew G. Knepley     ierr = DMGetDefaultSection(dmAux, &sectionAux);CHKERRQ(ierr);
3706a1cf66bbSMatthew G. Knepley     ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr);
3707a1cf66bbSMatthew G. Knepley   }
3708a1cf66bbSMatthew G. Knepley   /* Get flags */
3709a1cf66bbSMatthew G. Knepley   ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr);
3710a1cf66bbSMatthew G. Knepley   ierr = DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE);CHKERRQ(ierr);
3711a1cf66bbSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
3712a1cf66bbSMatthew G. Knepley     PetscObject  disc;
3713a1cf66bbSMatthew G. Knepley     PetscClassId id;
3714a1cf66bbSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, fieldI, &disc);CHKERRQ(ierr);
3715a1cf66bbSMatthew G. Knepley     ierr = PetscObjectGetClassId(disc, &id);CHKERRQ(ierr);
3716a1cf66bbSMatthew G. Knepley     if (id == PETSCFE_CLASSID)      {isFE[fieldI] = PETSC_TRUE;}
3717a1cf66bbSMatthew G. Knepley     else if (id == PETSCFV_CLASSID) {hasFV = PETSC_TRUE; isFE[fieldI] = PETSC_FALSE;}
3718a1cf66bbSMatthew G. Knepley   }
3719a1cf66bbSMatthew G. Knepley   ierr = PetscDSHasJacobian(prob, &hasJac);CHKERRQ(ierr);
3720a1cf66bbSMatthew G. Knepley   ierr = PetscDSHasJacobianPreconditioner(prob, &hasPrec);CHKERRQ(ierr);
3721a1cf66bbSMatthew G. Knepley   ierr = PetscDSHasDynamicJacobian(prob, &hasDyn);CHKERRQ(ierr);
3722a1cf66bbSMatthew G. Knepley   assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE;
3723a1cf66bbSMatthew G. Knepley   hasDyn      = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
3724a1cf66bbSMatthew G. Knepley   ierr = PetscObjectTypeCompare((PetscObject) Jac,  MATIS, &isMatIS);CHKERRQ(ierr);
3725a1cf66bbSMatthew G. Knepley   ierr = PetscObjectTypeCompare((PetscObject) JacP, MATIS, &isMatISP);CHKERRQ(ierr);
3726a1cf66bbSMatthew G. Knepley   /* Setup input data and temp arrays (should be DMGetWorkArray) */
3727a1cf66bbSMatthew G. Knepley   if (isMatISP || isMatISP) {ierr = DMPlexGetSubdomainSection(dm, &globalSection);CHKERRQ(ierr);}
3728a1cf66bbSMatthew G. Knepley   if (isMatIS)  {ierr = MatISGetLocalMat(Jac,  &J);CHKERRQ(ierr);}
3729a1cf66bbSMatthew G. Knepley   if (isMatISP) {ierr = MatISGetLocalMat(JacP, &JP);CHKERRQ(ierr);}
3730a1cf66bbSMatthew G. Knepley   if (hasFV)    {ierr = MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE);CHKERRQ(ierr);} /* No allocated space for FV stuff, so ignore the zero entries */
3731a1cf66bbSMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr);
3732a1cf66bbSMatthew G. Knepley   ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr);
3733a1cf66bbSMatthew G. Knepley   ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
3734a1cf66bbSMatthew G. Knepley   if (probAux) {ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);}
3735a1cf66bbSMatthew G. Knepley   CHKMEMQ;
3736a1cf66bbSMatthew G. Knepley   /* Compute batch sizes */
3737a1cf66bbSMatthew G. Knepley   if (isFE[0]) {
3738a1cf66bbSMatthew G. Knepley     PetscFE         fe;
3739a1cf66bbSMatthew G. Knepley     PetscQuadrature q;
3740a1cf66bbSMatthew G. Knepley     PetscInt        numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb;
3741a1cf66bbSMatthew G. Knepley 
3742a1cf66bbSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe);CHKERRQ(ierr);
3743a1cf66bbSMatthew G. Knepley     ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr);
3744a1cf66bbSMatthew G. Knepley     ierr = PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL);CHKERRQ(ierr);
3745a1cf66bbSMatthew G. Knepley     ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr);
3746a1cf66bbSMatthew G. Knepley     ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr);
3747a1cf66bbSMatthew G. Knepley     blockSize = Nb*numQuadPoints;
3748a1cf66bbSMatthew G. Knepley     batchSize = numBlocks  * blockSize;
3749a1cf66bbSMatthew G. Knepley     chunkSize = numBatches * batchSize;
3750a1cf66bbSMatthew G. Knepley     numChunks = numCells / chunkSize + numCells % chunkSize;
3751a1cf66bbSMatthew G. Knepley     ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr);
3752a1cf66bbSMatthew G. Knepley   } else {
3753a1cf66bbSMatthew G. Knepley     chunkSize = numCells;
3754a1cf66bbSMatthew G. Knepley     numChunks = 1;
3755a1cf66bbSMatthew G. Knepley   }
3756a1cf66bbSMatthew G. Knepley   /* Get work space */
3757a1cf66bbSMatthew G. Knepley   wsz  = (((X?1:0) + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize;
3758a1cf66bbSMatthew G. Knepley   ierr = DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work);CHKERRQ(ierr);
3759a1cf66bbSMatthew G. Knepley   ierr = PetscMemzero(work, wsz * sizeof(PetscScalar));CHKERRQ(ierr);
3760a1cf66bbSMatthew G. Knepley   off      = 0;
3761a1cf66bbSMatthew G. Knepley   u        = X       ? (sz = chunkSize*totDim,        off += sz, work+off-sz) : NULL;
3762a1cf66bbSMatthew G. Knepley   u_t      = X_t     ? (sz = chunkSize*totDim,        off += sz, work+off-sz) : NULL;
3763a1cf66bbSMatthew G. Knepley   a        = dmAux   ? (sz = chunkSize*totDimAux,     off += sz, work+off-sz) : NULL;
3764a1cf66bbSMatthew G. Knepley   elemMat  = hasJac  ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL;
3765a1cf66bbSMatthew G. Knepley   elemMatP = hasPrec ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL;
3766a1cf66bbSMatthew G. Knepley   elemMatD = hasDyn  ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL;
3767a1cf66bbSMatthew G. Knepley   if (off != wsz) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %D should be %D", off, wsz);
3768a1cf66bbSMatthew G. Knepley   /* Setup geometry */
3769a1cf66bbSMatthew G. Knepley   ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr);
37709b2fc754SMatthew G. Knepley   ierr = DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree);CHKERRQ(ierr);
37719b2fc754SMatthew G. Knepley   if (maxDegree <= 1) {ierr = DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom);CHKERRQ(ierr);}
3772a1cf66bbSMatthew G. Knepley   if (!qGeom) {
3773a1cf66bbSMatthew G. Knepley     PetscFE fe;
3774a1cf66bbSMatthew G. Knepley 
3775a1cf66bbSMatthew G. Knepley     ierr = PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe);CHKERRQ(ierr);
3776a1cf66bbSMatthew G. Knepley     ierr = PetscFEGetQuadrature(fe, &qGeom);CHKERRQ(ierr);
3777a1cf66bbSMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) qGeom);CHKERRQ(ierr);
3778a1cf66bbSMatthew G. Knepley   }
3779a1cf66bbSMatthew G. Knepley   ierr = DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM);CHKERRQ(ierr);
3780a1cf66bbSMatthew G. Knepley   /* Compute volume integrals */
3781a1cf66bbSMatthew G. Knepley   if (assembleJac) {ierr = MatZeroEntries(J);CHKERRQ(ierr);}
3782a1cf66bbSMatthew G. Knepley   ierr = MatZeroEntries(JP);CHKERRQ(ierr);
3783a1cf66bbSMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) {
3784a1cf66bbSMatthew G. Knepley     const PetscInt   Ncell = PetscMin(chunkSize, numCells - offCell);
3785a1cf66bbSMatthew G. Knepley     PetscInt         c;
3786a1cf66bbSMatthew G. Knepley 
3787a1cf66bbSMatthew G. Knepley     /* Extract values */
3788a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
3789a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c+offCell] : c+offCell;
3790a1cf66bbSMatthew G. Knepley       PetscScalar   *x = NULL,  *x_t = NULL;
3791a1cf66bbSMatthew G. Knepley       PetscInt       i;
3792a1cf66bbSMatthew G. Knepley 
3793a1cf66bbSMatthew G. Knepley       if (X) {
3794a1cf66bbSMatthew G. Knepley         ierr = DMPlexVecGetClosure(dm, section, X, cell, NULL, &x);CHKERRQ(ierr);
3795a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i];
3796a1cf66bbSMatthew G. Knepley         ierr = DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x);CHKERRQ(ierr);
3797a1cf66bbSMatthew G. Knepley       }
3798a1cf66bbSMatthew G. Knepley       if (X_t) {
3799a1cf66bbSMatthew G. Knepley         ierr = DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t);CHKERRQ(ierr);
3800a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[c*totDim+i] = x_t[i];
3801a1cf66bbSMatthew G. Knepley         ierr = DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t);CHKERRQ(ierr);
3802a1cf66bbSMatthew G. Knepley       }
3803a1cf66bbSMatthew G. Knepley       if (dmAux) {
3804a1cf66bbSMatthew G. Knepley         ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x);CHKERRQ(ierr);
3805a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i];
3806a1cf66bbSMatthew G. Knepley         ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x);CHKERRQ(ierr);
3807a1cf66bbSMatthew G. Knepley       }
3808a1cf66bbSMatthew G. Knepley     }
3809a1cf66bbSMatthew G. Knepley     CHKMEMQ;
3810a1cf66bbSMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
3811a1cf66bbSMatthew G. Knepley       PetscFE fe;
3812a1cf66bbSMatthew G. Knepley       ierr = PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fe);CHKERRQ(ierr);
3813a1cf66bbSMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
3814a1cf66bbSMatthew G. Knepley         if (hasJac)  {ierr = PetscFEIntegrateJacobian(fe, prob, PETSCFE_JACOBIAN,     fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat);CHKERRQ(ierr);}
3815a1cf66bbSMatthew G. Knepley         if (hasPrec) {ierr = PetscFEIntegrateJacobian(fe, prob, PETSCFE_JACOBIAN_PRE, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP);CHKERRQ(ierr);}
3816a1cf66bbSMatthew G. Knepley         if (hasDyn)  {ierr = PetscFEIntegrateJacobian(fe, prob, PETSCFE_JACOBIAN_DYN, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD);CHKERRQ(ierr);}
3817a1cf66bbSMatthew G. Knepley       }
3818a1cf66bbSMatthew G. Knepley       /* For finite volume, add the identity */
3819a1cf66bbSMatthew G. Knepley       if (!isFE[fieldI]) {
3820a1cf66bbSMatthew G. Knepley         PetscFV  fv;
3821a1cf66bbSMatthew G. Knepley         PetscInt eOffset = 0, Nc, fc, foff;
3822a1cf66bbSMatthew G. Knepley 
3823a1cf66bbSMatthew G. Knepley         ierr = PetscDSGetFieldOffset(prob, fieldI, &foff);CHKERRQ(ierr);
3824a1cf66bbSMatthew G. Knepley         ierr = PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fv);CHKERRQ(ierr);
3825a1cf66bbSMatthew G. Knepley         ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr);
3826a1cf66bbSMatthew G. Knepley         for (c = 0; c < chunkSize; ++c, eOffset += totDim*totDim) {
3827a1cf66bbSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
3828a1cf66bbSMatthew G. Knepley             const PetscInt i = foff + fc;
3829a1cf66bbSMatthew G. Knepley             if (hasJac)  {elemMat [eOffset+i*totDim+i] = 1.0;}
3830a1cf66bbSMatthew G. Knepley             if (hasPrec) {elemMatP[eOffset+i*totDim+i] = 1.0;}
3831a1cf66bbSMatthew G. Knepley           }
3832a1cf66bbSMatthew G. Knepley         }
3833a1cf66bbSMatthew G. Knepley       }
3834a1cf66bbSMatthew G. Knepley     }
3835a1cf66bbSMatthew G. Knepley     CHKMEMQ;
3836a1cf66bbSMatthew G. Knepley     /*   Add contribution from X_t */
3837a1cf66bbSMatthew G. Knepley     if (hasDyn) {for (c = 0; c < chunkSize*totDim*totDim; ++c) elemMat[c] += X_tShift*elemMatD[c];}
3838a1cf66bbSMatthew G. Knepley     /* Insert values into matrix */
3839a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
3840a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c+offCell] : c+offCell;
3841a1cf66bbSMatthew G. Knepley       if (mesh->printFEM > 1) {
3842a1cf66bbSMatthew G. Knepley         if (hasJac)  {ierr = DMPrintCellMatrix(cell, name,  totDim, totDim, &elemMat[(c-cStart)*totDim*totDim]);CHKERRQ(ierr);}
3843a1cf66bbSMatthew G. Knepley         if (hasPrec) {ierr = DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c-cStart)*totDim*totDim]);CHKERRQ(ierr);}
3844a1cf66bbSMatthew G. Knepley       }
3845a1cf66bbSMatthew G. Knepley       if (assembleJac) {ierr = DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES);CHKERRQ(ierr);}
3846a1cf66bbSMatthew G. Knepley       ierr = DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES);CHKERRQ(ierr);
3847a1cf66bbSMatthew G. Knepley     }
3848a1cf66bbSMatthew G. Knepley     CHKMEMQ;
3849a1cf66bbSMatthew G. Knepley   }
3850a1cf66bbSMatthew G. Knepley   /* Cleanup */
3851a1cf66bbSMatthew G. Knepley   ierr = DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM);CHKERRQ(ierr);
3852a1cf66bbSMatthew G. Knepley   ierr = PetscQuadratureDestroy(&qGeom);CHKERRQ(ierr);
3853a1cf66bbSMatthew G. Knepley   if (hasFV) {ierr = MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE);CHKERRQ(ierr);}
3854a1cf66bbSMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE);CHKERRQ(ierr);
3855a1cf66bbSMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, ((1 + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize, MPIU_SCALAR, &work);CHKERRQ(ierr);
3856a1cf66bbSMatthew G. Knepley   /* Compute boundary integrals */
3857a1cf66bbSMatthew G. Knepley   /* ierr = DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx);CHKERRQ(ierr); */
3858a1cf66bbSMatthew G. Knepley   /* Assemble matrix */
3859a1cf66bbSMatthew G. Knepley   if (assembleJac) {ierr = MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);ierr = MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);}
3860a1cf66bbSMatthew G. Knepley   ierr = MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);ierr = MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3861a1cf66bbSMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_JacobianFEM,dm,0,0,0);CHKERRQ(ierr);
3862a1cf66bbSMatthew G. Knepley   CHKMEMQ;
3863a1cf66bbSMatthew G. Knepley   PetscFunctionReturn(0);
3864a1cf66bbSMatthew G. Knepley }
3865