1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 4e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 5af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 6af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 7a0845e3aSMatthew G. Knepley 82f856554SMatthew G. Knepley static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 92f856554SMatthew G. Knepley { 102f856554SMatthew G. Knepley PetscBool isPlex; 112f856554SMatthew G. Knepley PetscErrorCode ierr; 122f856554SMatthew G. Knepley 132f856554SMatthew G. Knepley PetscFunctionBegin; 142f856554SMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) dm, DMPLEX, &isPlex);CHKERRQ(ierr); 152f856554SMatthew G. Knepley if (isPlex) { 162f856554SMatthew G. Knepley *plex = dm; 172f856554SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 182f856554SMatthew G. Knepley } else { 192f856554SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dm_plex", (PetscObject *) plex);CHKERRQ(ierr); 202f856554SMatthew G. Knepley if (!*plex) { 212f856554SMatthew G. Knepley ierr = DMConvert(dm,DMPLEX,plex);CHKERRQ(ierr); 222f856554SMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) dm, "dm_plex", (PetscObject) *plex);CHKERRQ(ierr); 232f856554SMatthew G. Knepley if (copy) { 242f856554SMatthew G. Knepley const char *comps[3] = {"A", "dmAux"}; 252f856554SMatthew G. Knepley PetscObject obj; 262f856554SMatthew G. Knepley PetscInt i; 272f856554SMatthew G. Knepley 282f856554SMatthew G. Knepley { 292f856554SMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 302f856554SMatthew G. Knepley DMSubDomainHookLink link; 312f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 322f856554SMatthew G. Knepley if (link->ddhook) {ierr = (*link->ddhook)(dm, *plex, link->ctx);CHKERRQ(ierr);} 332f856554SMatthew G. Knepley } 342f856554SMatthew G. Knepley } 352f856554SMatthew G. Knepley for (i = 0; i < 3; i++) { 362f856554SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, comps[i], &obj);CHKERRQ(ierr); 372f856554SMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) *plex, comps[i], obj);CHKERRQ(ierr); 382f856554SMatthew G. Knepley } 392f856554SMatthew G. Knepley } 402f856554SMatthew G. Knepley } else { 412f856554SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) *plex);CHKERRQ(ierr); 422f856554SMatthew G. Knepley } 432f856554SMatthew G. Knepley } 442f856554SMatthew G. Knepley PetscFunctionReturn(0); 452f856554SMatthew G. Knepley } 462f856554SMatthew G. Knepley 479b6f715bSMatthew G. Knepley static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom (void *ctx) 489b6f715bSMatthew G. Knepley { 499b6f715bSMatthew G. Knepley PetscFEGeom *geom = (PetscFEGeom *) ctx; 509b6f715bSMatthew G. Knepley PetscErrorCode ierr; 519b6f715bSMatthew G. Knepley 529b6f715bSMatthew G. Knepley PetscFunctionBegin; 539b6f715bSMatthew G. Knepley ierr = PetscFEGeomDestroy(&geom);CHKERRQ(ierr); 549b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 559b6f715bSMatthew G. Knepley } 569b6f715bSMatthew G. Knepley 579b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 589b6f715bSMatthew G. Knepley { 599b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 609b6f715bSMatthew G. Knepley PetscObjectId id; 619b6f715bSMatthew G. Knepley PetscContainer container; 629b6f715bSMatthew G. Knepley PetscErrorCode ierr; 639b6f715bSMatthew G. Knepley 649b6f715bSMatthew G. Knepley PetscFunctionBegin; 659b6f715bSMatthew G. Knepley ierr = PetscObjectGetId((PetscObject)quad,&id);CHKERRQ(ierr); 669b6f715bSMatthew G. Knepley ierr = PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%x\n", id);CHKERRQ(ierr); 679b6f715bSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container);CHKERRQ(ierr); 689b6f715bSMatthew G. Knepley if (container) { 699b6f715bSMatthew G. Knepley ierr = PetscContainerGetPointer(container, (void **) geom);CHKERRQ(ierr); 709b6f715bSMatthew G. Knepley } else { 719b6f715bSMatthew G. Knepley ierr = DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom);CHKERRQ(ierr); 729b6f715bSMatthew G. Knepley ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr); 739b6f715bSMatthew G. Knepley ierr = PetscContainerSetPointer(container, (void *) *geom);CHKERRQ(ierr); 749b6f715bSMatthew G. Knepley ierr = PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom);CHKERRQ(ierr); 759b6f715bSMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container);CHKERRQ(ierr); 769b6f715bSMatthew G. Knepley ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 779b6f715bSMatthew G. Knepley } 789b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 799b6f715bSMatthew G. Knepley } 809b6f715bSMatthew G. Knepley 819b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 829b6f715bSMatthew G. Knepley { 839b6f715bSMatthew G. Knepley PetscFunctionBegin; 849b6f715bSMatthew G. Knepley *geom = NULL; 859b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 869b6f715bSMatthew G. Knepley } 879b6f715bSMatthew G. Knepley 8846fa42a0SMatthew G. Knepley /*@ 8946fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9046fa42a0SMatthew G. Knepley 9146fa42a0SMatthew G. Knepley Not collective 9246fa42a0SMatthew G. Knepley 9346fa42a0SMatthew G. Knepley Input Arguments: 9446fa42a0SMatthew G. Knepley + dm - the DM 9546fa42a0SMatthew G. Knepley - unit - The SI unit 9646fa42a0SMatthew G. Knepley 9746fa42a0SMatthew G. Knepley Output Argument: 9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 9946fa42a0SMatthew G. Knepley 10046fa42a0SMatthew G. Knepley Level: advanced 10146fa42a0SMatthew G. Knepley 10246fa42a0SMatthew G. Knepley .seealso: DMPlexSetScale(), PetscUnit 10346fa42a0SMatthew G. Knepley @*/ 104cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 105cb1e1211SMatthew G Knepley { 106cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 107cb1e1211SMatthew G Knepley 108cb1e1211SMatthew G Knepley PetscFunctionBegin; 109cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 110cb1e1211SMatthew G Knepley PetscValidPointer(scale, 3); 111cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 112cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 113cb1e1211SMatthew G Knepley } 114cb1e1211SMatthew G Knepley 11546fa42a0SMatthew G. Knepley /*@ 11646fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11746fa42a0SMatthew G. Knepley 11846fa42a0SMatthew G. Knepley Not collective 11946fa42a0SMatthew G. Knepley 12046fa42a0SMatthew G. Knepley Input Arguments: 12146fa42a0SMatthew G. Knepley + dm - the DM 12246fa42a0SMatthew G. Knepley . unit - The SI unit 12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12446fa42a0SMatthew G. Knepley 12546fa42a0SMatthew G. Knepley Level: advanced 12646fa42a0SMatthew G. Knepley 12746fa42a0SMatthew G. Knepley .seealso: DMPlexGetScale(), PetscUnit 12846fa42a0SMatthew G. Knepley @*/ 129cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 130cb1e1211SMatthew G Knepley { 131cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 132cb1e1211SMatthew G Knepley 133cb1e1211SMatthew G Knepley PetscFunctionBegin; 134cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 135cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 136cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 137cb1e1211SMatthew G Knepley } 138cb1e1211SMatthew G Knepley 139d1828a1cSMatthew G. Knepley static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nf, PetscScalar *mode, void *ctx) 140026175e5SToby Isaac { 14112adca46SMatthew G. Knepley const PetscInt eps[3][3][3] = {{{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, {{0, 0, -1}, {0, 0, 0}, {1, 0, 0}}, {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0}}}; 142026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *) ctx; 143ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 144026175e5SToby Isaac PetscInt d = ctxInt[1]; 145026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 146026175e5SToby Isaac 147ad917190SMatthew G. Knepley PetscFunctionBegin; 148ad917190SMatthew G. Knepley if (dim != dim2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %d does not match context dimension %d", dim, dim2); 149026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 150026175e5SToby Isaac if (d < dim) { 15112adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 152ad917190SMatthew G. Knepley } else { 153026175e5SToby Isaac for (i = 0; i < dim; i++) { 154026175e5SToby Isaac for (j = 0; j < dim; j++) { 15512adca46SMatthew G. Knepley mode[j] += eps[i][j][k]*X[i]; /* Rotation about axis d */ 156026175e5SToby Isaac } 157026175e5SToby Isaac } 158026175e5SToby Isaac } 159ad917190SMatthew G. Knepley PetscFunctionReturn(0); 160026175e5SToby Isaac } 161026175e5SToby Isaac 162cc4e42d9SMartin Diehl /*@ 16312adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 164cb1e1211SMatthew G Knepley 165*d083f849SBarry Smith Collective on dm 166cb1e1211SMatthew G Knepley 167cb1e1211SMatthew G Knepley Input Arguments: 168026175e5SToby Isaac . dm - the DM 169cb1e1211SMatthew G Knepley 170cb1e1211SMatthew G Knepley Output Argument: 171cb1e1211SMatthew G Knepley . sp - the null space 172cb1e1211SMatthew G Knepley 17312adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 174cb1e1211SMatthew G Knepley 175cb1e1211SMatthew G Knepley Level: advanced 176cb1e1211SMatthew G Knepley 17712adca46SMatthew G. Knepley .seealso: MatNullSpaceCreate(), PCGAMG 178cb1e1211SMatthew G Knepley @*/ 179026175e5SToby Isaac PetscErrorCode DMPlexCreateRigidBody(DM dm, MatNullSpace *sp) 180cb1e1211SMatthew G Knepley { 181cb1e1211SMatthew G Knepley MPI_Comm comm; 182026175e5SToby Isaac Vec mode[6]; 183026175e5SToby Isaac PetscSection section, globalSection; 184b247467aSMatthew G. Knepley PetscInt dim, dimEmbed, n, m, mmin, d, i, j; 185cb1e1211SMatthew G Knepley PetscErrorCode ierr; 186cb1e1211SMatthew G Knepley 187cb1e1211SMatthew G Knepley PetscFunctionBegin; 188cb1e1211SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 189c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1909d8fbdeaSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 191cb1e1211SMatthew G Knepley if (dim == 1) { 192cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr); 193cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 194cb1e1211SMatthew G Knepley } 195e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 196e87a4003SBarry Smith ierr = DMGetGlobalSection(dm, &globalSection);CHKERRQ(ierr); 197cb1e1211SMatthew G Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 198b247467aSMatthew G. Knepley m = (dim*(dim+1))/2; 199cb1e1211SMatthew G Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 200cb1e1211SMatthew G Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 201cb1e1211SMatthew G Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 202b247467aSMatthew G. Knepley ierr = VecGetSize(mode[0], &n);CHKERRQ(ierr); 203b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 204cb1e1211SMatthew G Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 205026175e5SToby Isaac for (d = 0; d < m; d++) { 206330485fdSToby Isaac PetscInt ctx[2]; 207d1828a1cSMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 208026175e5SToby Isaac void *voidctx = (void *) (&ctx[0]); 209cb1e1211SMatthew G Knepley 2109d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 211330485fdSToby Isaac ctx[1] = d; 2120709b2feSToby Isaac ierr = DMProjectFunction(dm, 0.0, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 213cb1e1211SMatthew G Knepley } 214b247467aSMatthew G. Knepley for (i = 0; i < PetscMin(dim, mmin); ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 215cb1e1211SMatthew G Knepley /* Orthonormalize system */ 216b247467aSMatthew G. Knepley for (i = dim; i < mmin; ++i) { 217cb1e1211SMatthew G Knepley PetscScalar dots[6]; 218cb1e1211SMatthew G Knepley 219cb1e1211SMatthew G Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 220cb1e1211SMatthew G Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 221cb1e1211SMatthew G Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 222cb1e1211SMatthew G Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 223cb1e1211SMatthew G Knepley } 224b247467aSMatthew G. Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp);CHKERRQ(ierr); 225b247467aSMatthew G. Knepley for (i = 0; i < m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 226cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 227cb1e1211SMatthew G Knepley } 228cb1e1211SMatthew G Knepley 229cc4e42d9SMartin Diehl /*@ 23012adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 23112adca46SMatthew G. Knepley 232*d083f849SBarry Smith Collective on dm 23312adca46SMatthew G. Knepley 23412adca46SMatthew G. Knepley Input Arguments: 23512adca46SMatthew G. Knepley + dm - the DM 23612adca46SMatthew G. Knepley . nb - The number of bodies 23712adca46SMatthew G. Knepley . label - The DMLabel marking each domain 23812adca46SMatthew G. Knepley . nids - The number of ids per body 23912adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 24012adca46SMatthew G. Knepley 24112adca46SMatthew G. Knepley Output Argument: 24212adca46SMatthew G. Knepley . sp - the null space 24312adca46SMatthew G. Knepley 24412adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 24512adca46SMatthew G. Knepley 24612adca46SMatthew G. Knepley Level: advanced 24712adca46SMatthew G. Knepley 24812adca46SMatthew G. Knepley .seealso: MatNullSpaceCreate() 24912adca46SMatthew G. Knepley @*/ 25012adca46SMatthew G. Knepley PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 25112adca46SMatthew G. Knepley { 25212adca46SMatthew G. Knepley MPI_Comm comm; 25312adca46SMatthew G. Knepley PetscSection section, globalSection; 25412adca46SMatthew G. Knepley Vec *mode; 25512adca46SMatthew G. Knepley PetscScalar *dots; 25612adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 25712adca46SMatthew G. Knepley PetscErrorCode ierr; 25812adca46SMatthew G. Knepley 25912adca46SMatthew G. Knepley PetscFunctionBegin; 26012adca46SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 26112adca46SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 26212adca46SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 263e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 264e87a4003SBarry Smith ierr = DMGetGlobalSection(dm, &globalSection);CHKERRQ(ierr); 26512adca46SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 26612adca46SMatthew G. Knepley m = nb * (dim*(dim+1))/2; 26712adca46SMatthew G. Knepley ierr = PetscMalloc2(m, &mode, m, &dots);CHKERRQ(ierr); 26812adca46SMatthew G. Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 26912adca46SMatthew G. Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 27012adca46SMatthew G. Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 27112adca46SMatthew G. Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 27212adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 27312adca46SMatthew G. Knepley for (d = 0; d < m/nb; ++d) { 27412adca46SMatthew G. Knepley PetscInt ctx[2]; 27512adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 27612adca46SMatthew G. Knepley void *voidctx = (void *) (&ctx[0]); 27712adca46SMatthew G. Knepley 27812adca46SMatthew G. Knepley ctx[0] = dimEmbed; 27912adca46SMatthew G. Knepley ctx[1] = d; 28012adca46SMatthew G. Knepley ierr = DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 28112adca46SMatthew G. Knepley off += nids[b]; 28212adca46SMatthew G. Knepley } 28312adca46SMatthew G. Knepley } 28412adca46SMatthew G. Knepley for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 28512adca46SMatthew G. Knepley /* Orthonormalize system */ 28612adca46SMatthew G. Knepley for (i = 0; i < m; ++i) { 28712adca46SMatthew G. Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 28812adca46SMatthew G. Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 28912adca46SMatthew G. Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 29012adca46SMatthew G. Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 29112adca46SMatthew G. Knepley } 29212adca46SMatthew G. Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr); 29312adca46SMatthew G. Knepley for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 29412adca46SMatthew G. Knepley ierr = PetscFree2(mode, dots);CHKERRQ(ierr); 29512adca46SMatthew G. Knepley PetscFunctionReturn(0); 29612adca46SMatthew G. Knepley } 29712adca46SMatthew G. Knepley 298b29cfa1cSToby Isaac /*@ 299b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 300b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 301b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 302b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 303b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 304b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 305b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 306b29cfa1cSToby Isaac 307b29cfa1cSToby Isaac Input Parameters: 308b29cfa1cSToby Isaac + dm - the DMPlex object 309b29cfa1cSToby Isaac - height - the maximum projection height >= 0 310b29cfa1cSToby Isaac 311b29cfa1cSToby Isaac Level: advanced 312b29cfa1cSToby Isaac 3134d6f44ffSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 314b29cfa1cSToby Isaac @*/ 315b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 316b29cfa1cSToby Isaac { 317b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 318b29cfa1cSToby Isaac 319b29cfa1cSToby Isaac PetscFunctionBegin; 320b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 321b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 322b29cfa1cSToby Isaac PetscFunctionReturn(0); 323b29cfa1cSToby Isaac } 324b29cfa1cSToby Isaac 325b29cfa1cSToby Isaac /*@ 326b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 327b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 328b29cfa1cSToby Isaac 329b29cfa1cSToby Isaac Input Parameters: 330b29cfa1cSToby Isaac . dm - the DMPlex object 331b29cfa1cSToby Isaac 332b29cfa1cSToby Isaac Output Parameters: 333b29cfa1cSToby Isaac . height - the maximum projection height 334b29cfa1cSToby Isaac 335b29cfa1cSToby Isaac Level: intermediate 336b29cfa1cSToby Isaac 3374d6f44ffSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 338b29cfa1cSToby Isaac @*/ 339b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 340b29cfa1cSToby Isaac { 341b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 342b29cfa1cSToby Isaac 343b29cfa1cSToby Isaac PetscFunctionBegin; 344b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 345b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 346b29cfa1cSToby Isaac PetscFunctionReturn(0); 347b29cfa1cSToby Isaac } 348b29cfa1cSToby Isaac 349ca3d3a14SMatthew G. Knepley typedef struct { 350ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 351ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 352ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 353ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 354ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 355ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 356ca3d3a14SMatthew G. Knepley } RotCtx; 357ca3d3a14SMatthew G. Knepley 358ca3d3a14SMatthew G. Knepley /* 359ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 360ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 361ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 362ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 363ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 364ca3d3a14SMatthew G. Knepley */ 365ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 366ca3d3a14SMatthew G. Knepley { 367ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 368ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 369ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 370ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 371ca3d3a14SMatthew G. Knepley 372ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 373ca3d3a14SMatthew G. Knepley ierr = PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT);CHKERRQ(ierr); 374ca3d3a14SMatthew G. Knepley switch (dim) { 375ca3d3a14SMatthew G. Knepley case 2: 376ca3d3a14SMatthew G. Knepley c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha); 377ca3d3a14SMatthew G. Knepley rc->R[0] = c1;rc->R[1] = s1; 378ca3d3a14SMatthew G. Knepley rc->R[2] = -s1;rc->R[3] = c1; 379ca3d3a14SMatthew G. Knepley ierr = PetscMemcpy(rc->RT, rc->R, PetscSqr(dim) * sizeof(PetscScalar));CHKERRQ(ierr); 380ca3d3a14SMatthew G. Knepley DMPlex_Transpose2D_Internal(rc->RT);break; 381ca3d3a14SMatthew G. Knepley break; 382ca3d3a14SMatthew G. Knepley case 3: 383ca3d3a14SMatthew G. Knepley c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha); 384ca3d3a14SMatthew G. Knepley c2 = PetscCosReal(rc->beta); s2 = PetscSinReal(rc->beta); 385ca3d3a14SMatthew G. Knepley c3 = PetscCosReal(rc->gamma);s3 = PetscSinReal(rc->gamma); 386ca3d3a14SMatthew G. Knepley rc->R[0] = c1*c3 - c2*s1*s3;rc->R[1] = c3*s1 + c1*c2*s3;rc->R[2] = s2*s3; 387ca3d3a14SMatthew G. Knepley rc->R[3] = -c1*s3 - c2*c3*s1;rc->R[4] = c1*c2*c3 - s1*s3; rc->R[5] = c3*s2; 388ca3d3a14SMatthew G. Knepley rc->R[6] = s1*s2; rc->R[7] = -c1*s2; rc->R[8] = c2; 389ca3d3a14SMatthew G. Knepley ierr = PetscMemcpy(rc->RT, rc->R, PetscSqr(dim) * sizeof(PetscScalar));CHKERRQ(ierr); 390ca3d3a14SMatthew G. Knepley DMPlex_Transpose3D_Internal(rc->RT);break; 391ca3d3a14SMatthew G. Knepley break; 392ca3d3a14SMatthew G. Knepley default: SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 393ca3d3a14SMatthew G. Knepley } 394ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 395ca3d3a14SMatthew G. Knepley } 396ca3d3a14SMatthew G. Knepley 397ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 398ca3d3a14SMatthew G. Knepley { 399ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 400ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 401ca3d3a14SMatthew G. Knepley 402ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 403ca3d3a14SMatthew G. Knepley ierr = PetscFree2(rc->R, rc->RT);CHKERRQ(ierr); 404ca3d3a14SMatthew G. Knepley ierr = PetscFree(rc);CHKERRQ(ierr); 405ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 406ca3d3a14SMatthew G. Knepley } 407ca3d3a14SMatthew G. Knepley 408ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 409ca3d3a14SMatthew G. Knepley { 410ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 411ca3d3a14SMatthew G. Knepley 412ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 413ca3d3a14SMatthew G. Knepley PetscValidPointer(ctx, 5); 414ca3d3a14SMatthew G. Knepley if (l2g) {*A = rc->R;} 415ca3d3a14SMatthew G. Knepley else {*A = rc->RT;} 416ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 417ca3d3a14SMatthew G. Knepley } 418ca3d3a14SMatthew G. Knepley 419ab6a9622SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 420ab6a9622SMatthew G. Knepley { 421ec277c0fSMatthew G. Knepley PetscErrorCode ierr; 422ec277c0fSMatthew G. Knepley 423ec277c0fSMatthew G. Knepley PetscFunctionBegin; 424ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 425ab6a9622SMatthew G. Knepley switch (dim) { 426ab6a9622SMatthew G. Knepley case 2: 427ab6a9622SMatthew G. Knepley { 428ab6a9622SMatthew G. Knepley PetscScalar yt[2], zt[2]; 429ab6a9622SMatthew G. Knepley 430ab6a9622SMatthew G. Knepley yt[0] = y[0]; yt[1] = y[1]; 431ec277c0fSMatthew G. Knepley ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx);CHKERRQ(ierr); 432ab6a9622SMatthew G. Knepley z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]); 433ab6a9622SMatthew G. Knepley } 4349b4815dcSMatthew G. Knepley break; 435ab6a9622SMatthew G. Knepley case 3: 436ab6a9622SMatthew G. Knepley { 437ab6a9622SMatthew G. Knepley PetscScalar yt[3], zt[3]; 438ab6a9622SMatthew G. Knepley 439ab6a9622SMatthew G. Knepley yt[0] = y[0]; yt[1] = y[1]; yt[2] = y[2]; 440ec277c0fSMatthew G. Knepley ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx);CHKERRQ(ierr); 441ab6a9622SMatthew G. Knepley z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]); z[2] = PetscRealPart(zt[2]); 442ab6a9622SMatthew G. Knepley } 4439b4815dcSMatthew G. Knepley break; 444ab6a9622SMatthew G. Knepley } 445ab6a9622SMatthew G. Knepley #else 446ab6a9622SMatthew G. Knepley ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx);CHKERRQ(ierr); 447ab6a9622SMatthew G. Knepley #endif 448ec277c0fSMatthew G. Knepley PetscFunctionReturn(0); 449ab6a9622SMatthew G. Knepley } 450ab6a9622SMatthew G. Knepley 451ec277c0fSMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 452ca3d3a14SMatthew G. Knepley { 453ca3d3a14SMatthew G. Knepley const PetscScalar *A; 454ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 455ca3d3a14SMatthew G. Knepley 456ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 457ca3d3a14SMatthew G. Knepley ierr = (*dm->transformGetMatrix)(dm, x, l2g, &A, ctx);CHKERRQ(ierr); 458ca3d3a14SMatthew G. Knepley switch (dim) { 4591fba962aSMatthew G. Knepley case 2: DMPlex_Mult2D_Internal(A, 1, y, z);break; 4601fba962aSMatthew G. Knepley case 3: DMPlex_Mult3D_Internal(A, 1, y, z);break; 461ca3d3a14SMatthew G. Knepley } 462ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 463ca3d3a14SMatthew G. Knepley } 464ca3d3a14SMatthew G. Knepley 465ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 466ca3d3a14SMatthew G. Knepley { 467ca3d3a14SMatthew G. Knepley PetscSection ts; 468ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 469ca3d3a14SMatthew G. Knepley PetscInt dof; 470ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 471ca3d3a14SMatthew G. Knepley 472ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 473ca3d3a14SMatthew G. Knepley ierr = DMGetSection(tdm, &ts);CHKERRQ(ierr); 474ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(ts, p, f, &dof);CHKERRQ(ierr); 475ca3d3a14SMatthew G. Knepley ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr); 476ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(tdm, p, f, ta, (void *) &tva);CHKERRQ(ierr); 477ca3d3a14SMatthew G. Knepley if (l2g) { 478ca3d3a14SMatthew G. Knepley switch (dof) { 4791fba962aSMatthew G. Knepley case 4: DMPlex_Mult2D_Internal(tva, 1, a, a);break; 4801fba962aSMatthew G. Knepley case 9: DMPlex_Mult3D_Internal(tva, 1, a, a);break; 481ca3d3a14SMatthew G. Knepley } 482ca3d3a14SMatthew G. Knepley } else { 483ca3d3a14SMatthew G. Knepley switch (dof) { 4841fba962aSMatthew G. Knepley case 4: DMPlex_MultTranspose2D_Internal(tva, 1, a, a);break; 4851fba962aSMatthew G. Knepley case 9: DMPlex_MultTranspose3D_Internal(tva, 1, a, a);break; 486ca3d3a14SMatthew G. Knepley } 487ca3d3a14SMatthew G. Knepley } 488ca3d3a14SMatthew G. Knepley ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr); 489ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 490ca3d3a14SMatthew G. Knepley } 491ca3d3a14SMatthew G. Knepley 492ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 493ca3d3a14SMatthew G. Knepley { 494ca3d3a14SMatthew G. Knepley PetscSection s, ts; 495ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 496ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 497ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 498ca3d3a14SMatthew G. Knepley 499ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 500ca3d3a14SMatthew G. Knepley ierr = DMGetSection(dm, &s);CHKERRQ(ierr); 501ca3d3a14SMatthew G. Knepley ierr = DMGetSection(tdm, &ts);CHKERRQ(ierr); 502ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, pf, f, &fpdof);CHKERRQ(ierr); 503ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, pg, g, &gpdof);CHKERRQ(ierr); 504ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(ts, pf, f, &fdof);CHKERRQ(ierr); 505ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(ts, pg, g, &gdof);CHKERRQ(ierr); 506ca3d3a14SMatthew G. Knepley ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr); 507ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(tdm, pf, f, ta, (void *) &tvaf);CHKERRQ(ierr); 508ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(tdm, pg, g, ta, (void *) &tvag);CHKERRQ(ierr); 509ca3d3a14SMatthew G. Knepley if (l2g) { 510ca3d3a14SMatthew G. Knepley switch (fdof) { 511ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);break; 512ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);break; 513ca3d3a14SMatthew G. Knepley } 514ca3d3a14SMatthew G. Knepley switch (gdof) { 515ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);break; 516ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);break; 517ca3d3a14SMatthew G. Knepley } 518ca3d3a14SMatthew G. Knepley } else { 519ca3d3a14SMatthew G. Knepley switch (fdof) { 520ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);break; 521ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);break; 522ca3d3a14SMatthew G. Knepley } 523ca3d3a14SMatthew G. Knepley switch (gdof) { 524ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);break; 525ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);break; 526ca3d3a14SMatthew G. Knepley } 527ca3d3a14SMatthew G. Knepley } 528ca3d3a14SMatthew G. Knepley ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr); 529ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 530ca3d3a14SMatthew G. Knepley } 531ca3d3a14SMatthew G. Knepley 532ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 533ca3d3a14SMatthew G. Knepley { 534ca3d3a14SMatthew G. Knepley PetscSection s; 535ca3d3a14SMatthew G. Knepley PetscSection clSection; 536ca3d3a14SMatthew G. Knepley IS clPoints; 537ca3d3a14SMatthew G. Knepley const PetscInt *clp; 538ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 539ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 540ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 541ca3d3a14SMatthew G. Knepley 542ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 543ca3d3a14SMatthew G. Knepley ierr = DMGetSection(dm, &s);CHKERRQ(ierr); 544ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr); 545ca3d3a14SMatthew G. Knepley ierr = DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 546ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 547ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np*2; cp += 2) { 548ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, points[cp], f, &dof);CHKERRQ(ierr); 549ca3d3a14SMatthew G. Knepley if (!dof) continue; 550ca3d3a14SMatthew G. Knepley if (fieldActive[f]) {ierr = DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]);CHKERRQ(ierr);} 551ca3d3a14SMatthew G. Knepley d += dof; 552ca3d3a14SMatthew G. Knepley } 553ca3d3a14SMatthew G. Knepley } 554ca3d3a14SMatthew G. Knepley ierr = DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 555ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 556ca3d3a14SMatthew G. Knepley } 557ca3d3a14SMatthew G. Knepley 558ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 559ca3d3a14SMatthew G. Knepley { 560ca3d3a14SMatthew G. Knepley PetscSection s; 561ca3d3a14SMatthew G. Knepley PetscSection clSection; 562ca3d3a14SMatthew G. Knepley IS clPoints; 563ca3d3a14SMatthew G. Knepley const PetscInt *clp; 564ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 5658bdb3c71SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0; 566ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 567ca3d3a14SMatthew G. Knepley 568ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 569ca3d3a14SMatthew G. Knepley ierr = DMGetSection(dm, &s);CHKERRQ(ierr); 570ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr); 571ca3d3a14SMatthew G. Knepley ierr = DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 572ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 573ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np*2; cpf += 2) { 574ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, points[cpf], f, &fdof);CHKERRQ(ierr); 575ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 576ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np*2; cpg += 2) { 577ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, points[cpg], g, &gdof);CHKERRQ(ierr); 578ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r*lda+c]);CHKERRQ(ierr); 579ca3d3a14SMatthew G. Knepley c += gdof; 580ca3d3a14SMatthew G. Knepley } 581ca3d3a14SMatthew G. Knepley } 582ca3d3a14SMatthew G. Knepley if (c != lda) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %D should be %D", c, lda); 583ca3d3a14SMatthew G. Knepley r += fdof; 584ca3d3a14SMatthew G. Knepley } 585ca3d3a14SMatthew G. Knepley } 586ca3d3a14SMatthew G. Knepley if (r != lda) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %D should be %D", c, lda); 587ca3d3a14SMatthew G. Knepley ierr = DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 588ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 589ca3d3a14SMatthew G. Knepley } 590ca3d3a14SMatthew G. Knepley 591ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 592ca3d3a14SMatthew G. Knepley { 593ca3d3a14SMatthew G. Knepley DM tdm; 594ca3d3a14SMatthew G. Knepley Vec tv; 595ca3d3a14SMatthew G. Knepley PetscSection ts, s; 596ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 597ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 598ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 599ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 600ca3d3a14SMatthew G. Knepley 601ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 602ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 603ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 604ca3d3a14SMatthew G. Knepley ierr = DMGetSection(tdm, &ts);CHKERRQ(ierr); 605ca3d3a14SMatthew G. Knepley ierr = DMGetSection(dm, &s);CHKERRQ(ierr); 606ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetChart(s, &pStart, &pEnd);CHKERRQ(ierr); 607ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr); 608ca3d3a14SMatthew G. Knepley ierr = VecGetArray(lv, &a);CHKERRQ(ierr); 609ca3d3a14SMatthew G. Knepley ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr); 610ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 611ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 612ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, p, f, a, (void *) &va);CHKERRQ(ierr); 613ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va);CHKERRQ(ierr); 614ca3d3a14SMatthew G. Knepley } 615ca3d3a14SMatthew G. Knepley } 616ca3d3a14SMatthew G. Knepley ierr = VecRestoreArray(lv, &a);CHKERRQ(ierr); 617ca3d3a14SMatthew G. Knepley ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr); 618ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 619ca3d3a14SMatthew G. Knepley } 620ca3d3a14SMatthew G. Knepley 621ca3d3a14SMatthew G. Knepley /*@ 622ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 623ca3d3a14SMatthew G. Knepley 624ca3d3a14SMatthew G. Knepley Input Parameters: 625ca3d3a14SMatthew G. Knepley + dm - The DM 626ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 627ca3d3a14SMatthew G. Knepley 628ca3d3a14SMatthew G. Knepley Output Parameters: 629ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 630ca3d3a14SMatthew G. Knepley 631c0f8e1fdSMatthew G. Knepley Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 632c0f8e1fdSMatthew G. Knepley 633ca3d3a14SMatthew G. Knepley Level: developer 634ca3d3a14SMatthew G. Knepley 635ca3d3a14SMatthew G. Knepley .seealso: DMPlexLocalToGlobalBasis(), DMGetSection() 636ca3d3a14SMatthew G. Knepley @*/ 637ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 638ca3d3a14SMatthew G. Knepley { 639ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 640ca3d3a14SMatthew G. Knepley 641ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 642ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 643ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 644ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE);CHKERRQ(ierr); 645ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 646ca3d3a14SMatthew G. Knepley } 647ca3d3a14SMatthew G. Knepley 648ca3d3a14SMatthew G. Knepley /*@ 649ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 650ca3d3a14SMatthew G. Knepley 651ca3d3a14SMatthew G. Knepley Input Parameters: 652ca3d3a14SMatthew G. Knepley + dm - The DM 653ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 654ca3d3a14SMatthew G. Knepley 655ca3d3a14SMatthew G. Knepley Output Parameters: 656ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 657ca3d3a14SMatthew G. Knepley 658c0f8e1fdSMatthew G. Knepley Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 659c0f8e1fdSMatthew G. Knepley 660ca3d3a14SMatthew G. Knepley Level: developer 661ca3d3a14SMatthew G. Knepley 662ca3d3a14SMatthew G. Knepley .seealso: DMPlexGlobalToLocalBasis(), DMGetSection() 663ca3d3a14SMatthew G. Knepley @*/ 664ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 665ca3d3a14SMatthew G. Knepley { 666ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 667ca3d3a14SMatthew G. Knepley 668ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 669ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 670ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 671ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE);CHKERRQ(ierr); 672ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 673ca3d3a14SMatthew G. Knepley } 674ca3d3a14SMatthew G. Knepley 675ca3d3a14SMatthew G. Knepley /*@ 676ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 677ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 678ca3d3a14SMatthew G. Knepley 679ca3d3a14SMatthew G. Knepley Input Parameters: 680ca3d3a14SMatthew G. Knepley + dm - The DM 681ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 682ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 683ca3d3a14SMatthew G. Knepley . gamma - The third Euler angle 684ca3d3a14SMatthew G. Knepley 685ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 686ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 687ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 688ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 689ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 690ca3d3a14SMatthew G. Knepley 691ca3d3a14SMatthew G. Knepley Level: developer 692ca3d3a14SMatthew G. Knepley 693ca3d3a14SMatthew G. Knepley .seealso: DMPlexGlobalToLocalBasis(), DMPlexLocalToGlobalBasis() 694ca3d3a14SMatthew G. Knepley @*/ 695ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 696ca3d3a14SMatthew G. Knepley { 697ca3d3a14SMatthew G. Knepley RotCtx *rc; 698ca3d3a14SMatthew G. Knepley PetscInt cdim; 699ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 700ca3d3a14SMatthew G. Knepley 701ca3d3a14SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 702ca3d3a14SMatthew G. Knepley ierr = PetscMalloc1(1, &rc);CHKERRQ(ierr); 703ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 704ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 705ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 706ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 707ca3d3a14SMatthew G. Knepley rc->dim = cdim; 708ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 709ca3d3a14SMatthew G. Knepley rc->beta = beta; 710ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 711ca3d3a14SMatthew G. Knepley ierr = (*dm->transformSetUp)(dm, dm->transformCtx);CHKERRQ(ierr); 712ca3d3a14SMatthew G. Knepley ierr = DMConstructBasisTransform_Internal(dm);CHKERRQ(ierr); 713ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 714ca3d3a14SMatthew G. Knepley } 715ca3d3a14SMatthew G. Knepley 716b278463cSMatthew G. Knepley /*@C 717b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector 718b278463cSMatthew G. Knepley 719b278463cSMatthew G. Knepley Input Parameters: 720b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 721b278463cSMatthew G. Knepley . time - The time 722b278463cSMatthew G. Knepley . field - The field to constrain 7231c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7241c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 725b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 726b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 727b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 728b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 729b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 730b278463cSMatthew G. Knepley 731b278463cSMatthew G. Knepley Output Parameter: 732b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 733b278463cSMatthew G. Knepley 734b278463cSMatthew G. Knepley Level: developer 735b278463cSMatthew G. Knepley 736b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary() 737b278463cSMatthew G. Knepley @*/ 7381c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 73955f2e967SMatthew G. Knepley { 7400163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 74155f2e967SMatthew G. Knepley void **ctxs; 742d7ddef95SMatthew G. Knepley PetscInt numFields; 743d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 744d7ddef95SMatthew G. Knepley 745d7ddef95SMatthew G. Knepley PetscFunctionBegin; 746d7ddef95SMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 747d7ddef95SMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 748d7ddef95SMatthew G. Knepley funcs[field] = func; 749d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 7501c531cf8SMatthew G. Knepley ierr = DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 751d7ddef95SMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 752d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 753d7ddef95SMatthew G. Knepley } 754d7ddef95SMatthew G. Knepley 755b278463cSMatthew G. Knepley /*@C 756b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector 757b278463cSMatthew G. Knepley 758b278463cSMatthew G. Knepley Input Parameters: 759b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 760b278463cSMatthew G. Knepley . time - The time 761b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 762b278463cSMatthew G. Knepley . field - The field to constrain 7631c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7641c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 765b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 766b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 767b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 768b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 769b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 770b278463cSMatthew G. Knepley 771b278463cSMatthew G. Knepley Output Parameter: 772b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 773b278463cSMatthew G. Knepley 774b278463cSMatthew G. Knepley Level: developer 775b278463cSMatthew G. Knepley 776b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMAddBoundary() 777b278463cSMatthew G. Knepley @*/ 7781c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], 779c60e475cSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 780c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 781c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 78297b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], 783b278463cSMatthew G. Knepley PetscScalar[]), 784b278463cSMatthew G. Knepley void *ctx, Vec locX) 785c60e475cSMatthew G. Knepley { 786c60e475cSMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 787c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 788c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 78997b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 790c60e475cSMatthew G. Knepley void **ctxs; 791c60e475cSMatthew G. Knepley PetscInt numFields; 792c60e475cSMatthew G. Knepley PetscErrorCode ierr; 793c60e475cSMatthew G. Knepley 794c60e475cSMatthew G. Knepley PetscFunctionBegin; 795c60e475cSMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 796c60e475cSMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 797c60e475cSMatthew G. Knepley funcs[field] = func; 798c60e475cSMatthew G. Knepley ctxs[field] = ctx; 7991c531cf8SMatthew G. Knepley ierr = DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 800c60e475cSMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 801c60e475cSMatthew G. Knepley PetscFunctionReturn(0); 802c60e475cSMatthew G. Knepley } 803c60e475cSMatthew G. Knepley 804b278463cSMatthew G. Knepley /*@C 805b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 806b278463cSMatthew G. Knepley 807b278463cSMatthew G. Knepley Input Parameters: 808b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 809b278463cSMatthew G. Knepley . time - The time 810b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 811b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 812b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 813b278463cSMatthew G. Knepley . field - The field to constrain 8141c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 8151c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 816b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 817b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 818b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 819b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 820b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 821b278463cSMatthew G. Knepley 822b278463cSMatthew G. Knepley Output Parameter: 823b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 824b278463cSMatthew G. Knepley 825b278463cSMatthew G. Knepley Note: This implementation currently ignores the numcomps/comps argument from DMAddBoundary() 826b278463cSMatthew G. Knepley 827b278463cSMatthew G. Knepley Level: developer 828b278463cSMatthew G. Knepley 829b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary() 830b278463cSMatthew G. Knepley @*/ 8311c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], 832b278463cSMatthew G. Knepley PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 833d7ddef95SMatthew G. Knepley { 83461f58d28SMatthew G. Knepley PetscDS prob; 835da97024aSMatthew G. Knepley PetscSF sf; 836d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 83720369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 838da97024aSMatthew G. Knepley const PetscInt *leaves; 839d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 840520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 841e735a8a9SMatthew G. Knepley PetscErrorCode ierr, ierru = 0; 842d7ddef95SMatthew G. Knepley 843d7ddef95SMatthew G. Knepley PetscFunctionBegin; 844da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 845da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 846da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 847d7ddef95SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 848d7ddef95SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 84961f58d28SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 850d7ddef95SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 851d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 85220369375SToby Isaac if (cellGeometry) { 853d7ddef95SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 854d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 85520369375SToby Isaac } 856d7ddef95SMatthew G. Knepley if (Grad) { 857c0a6632aSMatthew G. Knepley PetscFV fv; 858c0a6632aSMatthew G. Knepley 859c0a6632aSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fv);CHKERRQ(ierr); 860d7ddef95SMatthew G. Knepley ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr); 861d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr); 862d7ddef95SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 86369291d52SBarry Smith ierr = DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx);CHKERRQ(ierr); 864d7ddef95SMatthew G. Knepley } 865d7ddef95SMatthew G. Knepley ierr = VecGetArray(locX, &x);CHKERRQ(ierr); 866d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 867d7ddef95SMatthew G. Knepley IS faceIS; 868d7ddef95SMatthew G. Knepley const PetscInt *faces; 869d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 870d7ddef95SMatthew G. Knepley 871d7ddef95SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr); 872d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 873d7ddef95SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 874d7ddef95SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 875d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 876d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 877640bce14SSatish Balay PetscFVFaceGeom *fg; 878d7ddef95SMatthew G. Knepley 879d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 880da97024aSMatthew G. Knepley ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr); 881da97024aSMatthew G. Knepley if (loc >= 0) continue; 882d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 883d7ddef95SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 884d7ddef95SMatthew G. Knepley if (Grad) { 885640bce14SSatish Balay PetscFVCellGeom *cg; 886640bce14SSatish Balay PetscScalar *cx, *cgrad; 887d7ddef95SMatthew G. Knepley PetscScalar *xG; 888d7ddef95SMatthew G. Knepley PetscReal dx[3]; 889d7ddef95SMatthew G. Knepley PetscInt d; 890d7ddef95SMatthew G. Knepley 891d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr); 892d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr); 893d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr); 894520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 895d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 896d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 897e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx); 898e735a8a9SMatthew G. Knepley if (ierru) { 899e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 900e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 901e735a8a9SMatthew G. Knepley goto cleanup; 902e735a8a9SMatthew G. Knepley } 903d7ddef95SMatthew G. Knepley } else { 904640bce14SSatish Balay PetscScalar *xI; 905d7ddef95SMatthew G. Knepley PetscScalar *xG; 906d7ddef95SMatthew G. Knepley 907d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr); 908520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 909e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 910e735a8a9SMatthew G. Knepley if (ierru) { 911e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 912e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 913e735a8a9SMatthew G. Knepley goto cleanup; 914e735a8a9SMatthew G. Knepley } 915d7ddef95SMatthew G. Knepley } 916d7ddef95SMatthew G. Knepley } 917d7ddef95SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 918d7ddef95SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 919d7ddef95SMatthew G. Knepley } 920e735a8a9SMatthew G. Knepley cleanup: 921d7ddef95SMatthew G. Knepley ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr); 922d7ddef95SMatthew G. Knepley if (Grad) { 92369291d52SBarry Smith ierr = DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx);CHKERRQ(ierr); 924d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr); 925d7ddef95SMatthew G. Knepley } 926e735a8a9SMatthew G. Knepley if (cellGeometry) {ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);} 927d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 928e735a8a9SMatthew G. Knepley CHKERRQ(ierru); 929d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 930d7ddef95SMatthew G. Knepley } 931d7ddef95SMatthew G. Knepley 932f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 933d7ddef95SMatthew G. Knepley { 934e5e52638SMatthew G. Knepley PetscDS prob; 935d7ddef95SMatthew G. Knepley PetscInt numBd, b; 93655f2e967SMatthew G. Knepley PetscErrorCode ierr; 93755f2e967SMatthew G. Knepley 93855f2e967SMatthew G. Knepley PetscFunctionBegin; 939e5e52638SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 940e5e52638SMatthew G. Knepley ierr = PetscDSGetNumBoundary(prob, &numBd);CHKERRQ(ierr); 94155f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 942f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 943648eda8cSMatthew G. Knepley const char *name, *labelname; 944d7ddef95SMatthew G. Knepley DMLabel label; 9451c531cf8SMatthew G. Knepley PetscInt field, Nc; 9461c531cf8SMatthew G. Knepley const PetscInt *comps; 947d7ddef95SMatthew G. Knepley PetscObject obj; 948d7ddef95SMatthew G. Knepley PetscClassId id; 949a30ec4eaSSatish Balay void (*func)(void); 950d7ddef95SMatthew G. Knepley PetscInt numids; 951d7ddef95SMatthew G. Knepley const PetscInt *ids; 95255f2e967SMatthew G. Knepley void *ctx; 95355f2e967SMatthew G. Knepley 954648eda8cSMatthew G. Knepley ierr = DMGetBoundary(dm, b, &type, &name, &labelname, &field, &Nc, &comps, &func, &numids, &ids, &ctx);CHKERRQ(ierr); 955f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 956c58f1c22SToby Isaac ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr); 957648eda8cSMatthew G. Knepley if (!label) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONGSTATE, "Label %s for boundary condition %s does not exist in the DM", labelname, name); 95844a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 959d7ddef95SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 960d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 961c60e475cSMatthew G. Knepley switch (type) { 962c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 963c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL: 964092e5057SToby Isaac ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 9651c531cf8SMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, (PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr); 966092e5057SToby Isaac ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 967c60e475cSMatthew G. Knepley break; 968c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL_FIELD: 969c60e475cSMatthew G. Knepley ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 9701c531cf8SMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, 971b278463cSMatthew G. Knepley (void (*)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 972c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 97397b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[])) func, ctx, locX);CHKERRQ(ierr); 974c60e475cSMatthew G. Knepley ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 975c60e475cSMatthew G. Knepley break; 976c60e475cSMatthew G. Knepley default: break; 977c60e475cSMatthew G. Knepley } 978d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 97943ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 9801c531cf8SMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, 981b278463cSMatthew G. Knepley (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr); 982d7ddef95SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 98355f2e967SMatthew G. Knepley } 98455f2e967SMatthew G. Knepley PetscFunctionReturn(0); 98555f2e967SMatthew G. Knepley } 98655f2e967SMatthew G. Knepley 987f1d73a7aSMatthew G. Knepley /*@ 988f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 989f1d73a7aSMatthew G. Knepley 990f1d73a7aSMatthew G. Knepley Input Parameters: 991f1d73a7aSMatthew G. Knepley + dm - The DM 992f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 993f1d73a7aSMatthew G. Knepley . time - The time 994f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 995f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 996f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 997f1d73a7aSMatthew G. Knepley 998f1d73a7aSMatthew G. Knepley Output Parameters: 999f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 1000f1d73a7aSMatthew G. Knepley 1001f1d73a7aSMatthew G. Knepley Level: developer 1002f1d73a7aSMatthew G. Knepley 1003f1d73a7aSMatthew G. Knepley .seealso: DMProjectFunctionLabelLocal() 1004f1d73a7aSMatthew G. Knepley @*/ 1005f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1006f1d73a7aSMatthew G. Knepley { 1007f1d73a7aSMatthew G. Knepley PetscErrorCode ierr; 1008f1d73a7aSMatthew G. Knepley 1009f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1010f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1011f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 2); 1012f1d73a7aSMatthew G. Knepley if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);} 1013f1d73a7aSMatthew G. Knepley if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);} 1014f1d73a7aSMatthew G. Knepley if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);} 1015f1d73a7aSMatthew G. Knepley ierr = PetscTryMethod(dm,"DMPlexInsertBoundaryValues_C",(DM,PetscBool,Vec,PetscReal,Vec,Vec,Vec),(dm,insertEssential,locX,time,faceGeomFVM,cellGeomFVM,gradFVM));CHKERRQ(ierr); 1016f1d73a7aSMatthew G. Knepley PetscFunctionReturn(0); 1017f1d73a7aSMatthew G. Knepley } 1018f1d73a7aSMatthew G. Knepley 10190709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1020cb1e1211SMatthew G Knepley { 1021574a98acSMatthew G. Knepley Vec localX; 1022574a98acSMatthew G. Knepley PetscErrorCode ierr; 1023574a98acSMatthew G. Knepley 1024574a98acSMatthew G. Knepley PetscFunctionBegin; 1025574a98acSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 10265d42b983SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL);CHKERRQ(ierr); 1027574a98acSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1028574a98acSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1029574a98acSMatthew G. Knepley ierr = DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff);CHKERRQ(ierr); 1030574a98acSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1031574a98acSMatthew G. Knepley PetscFunctionReturn(0); 1032574a98acSMatthew G. Knepley } 1033574a98acSMatthew G. Knepley 1034574a98acSMatthew G. Knepley /*@C 1035ca3d3a14SMatthew G. Knepley DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1036574a98acSMatthew G. Knepley 1037*d083f849SBarry Smith Collective on dm 1038c0f8e1fdSMatthew G. Knepley 1039574a98acSMatthew G. Knepley Input Parameters: 1040574a98acSMatthew G. Knepley + dm - The DM 1041574a98acSMatthew G. Knepley . time - The time 1042574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 1043574a98acSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1044574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1045574a98acSMatthew G. Knepley 1046574a98acSMatthew G. Knepley Output Parameter: 1047574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1048574a98acSMatthew G. Knepley 1049574a98acSMatthew G. Knepley Level: developer 1050574a98acSMatthew G. Knepley 1051574a98acSMatthew G. Knepley .seealso: DMProjectFunction(), DMComputeL2FieldDiff(), DMComputeL2GradientDiff() 1052574a98acSMatthew G. Knepley @*/ 1053574a98acSMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1054574a98acSMatthew G. Knepley { 10550f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1056ca3d3a14SMatthew G. Knepley DM tdm; 1057ca3d3a14SMatthew G. Knepley Vec tv; 1058cb1e1211SMatthew G Knepley PetscSection section; 1059c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 10604bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 106115496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 10624bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 1063cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 10647318780aSToby Isaac const PetscReal *quadWeights; 1065aed3cbd0SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, cEndInterior, c, field, fieldOffset; 1066ca3d3a14SMatthew G. Knepley PetscBool transform; 1067cb1e1211SMatthew G Knepley PetscErrorCode ierr; 1068cb1e1211SMatthew G Knepley 1069cb1e1211SMatthew G Knepley PetscFunctionBegin; 1070c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 10717318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 10722a4e142eSMatthew G. Knepley fegeom.dimEmbed = coordDim; 1073e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 1074cb1e1211SMatthew G Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 1075ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 1076ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 1077ca3d3a14SMatthew G. Knepley ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr); 1078cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 107915496722SMatthew G. Knepley PetscObject obj; 108015496722SMatthew G. Knepley PetscClassId id; 1081c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1082c5bbbd5bSMatthew G. Knepley 108344a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 108415496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 108515496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 108615496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 108715496722SMatthew G. Knepley 10880f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 10890f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 109015496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 109115496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 109215496722SMatthew G. Knepley 109315496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 109415496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 109515496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1096c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1097cb1e1211SMatthew G Knepley } 10989c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights);CHKERRQ(ierr); 1099beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 11002a4e142eSMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ);CHKERRQ(ierr); 1101aed3cbd0SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 1102aed3cbd0SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 11039ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 11049ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 1105cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1106a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1107cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 11089c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1109cb1e1211SMatthew G Knepley 11102a4e142eSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 1111cb1e1211SMatthew G Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1112cb1e1211SMatthew G Knepley 111315496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 111415496722SMatthew G. Knepley PetscObject obj; 111515496722SMatthew G. Knepley PetscClassId id; 1116c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 111715496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1118cb1e1211SMatthew G Knepley 111944a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 112015496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 112115496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 112215496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 112315496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1124cb1e1211SMatthew G Knepley if (debug) { 1125cb1e1211SMatthew G Knepley char title[1024]; 1126cb1e1211SMatthew G Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 11274c848028SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr); 1128cb1e1211SMatthew G Knepley } 11297318780aSToby Isaac for (q = 0; q < Nq; ++q) { 11302a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 11312a4e142eSMatthew G. Knepley 11322a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 11332a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 11342a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 11352a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 11364bee2e38SMatthew G. Knepley if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, point %D", fegeom.detJ[q], c, q); 1137d3a7d86cSMatthew G. Knepley if (transform) { 1138d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*Nq]; 1139d3a7d86cSMatthew G. Knepley ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr); 1140d3a7d86cSMatthew G. Knepley } else { 1141d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*q]; 1142d3a7d86cSMatthew G. Knepley } 1143ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1144e735a8a9SMatthew G. Knepley if (ierr) { 1145e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1146e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1147e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 11482a4e142eSMatthew G. Knepley ierr2 = PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr2); 1149e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1150e735a8a9SMatthew G. Knepley } 1151ca3d3a14SMatthew G. Knepley if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);} 11522a4e142eSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr);} 115315496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 115415496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 115515496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1156beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 11574bee2e38SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %D field %D,%D diff %g\n", c, field, fc, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]);CHKERRQ(ierr);} 11584bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 1159cb1e1211SMatthew G Knepley } 1160cb1e1211SMatthew G Knepley } 11619c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1162beaa55a6SMatthew G. Knepley qc += Nc; 1163cb1e1211SMatthew G Knepley } 1164cb1e1211SMatthew G Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1165cb1e1211SMatthew G Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 1166cb1e1211SMatthew G Knepley localDiff += elemDiff; 1167cb1e1211SMatthew G Knepley } 11682a4e142eSMatthew G. Knepley ierr = PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr); 1169b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 1170cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 1171cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1172cb1e1211SMatthew G Knepley } 1173cb1e1211SMatthew G Knepley 1174b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1175cb1e1211SMatthew G Knepley { 11760f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1177ca3d3a14SMatthew G. Knepley DM tdm; 1178cb1e1211SMatthew G Knepley PetscSection section; 117940e14135SMatthew G. Knepley PetscQuadrature quad; 1180ca3d3a14SMatthew G. Knepley Vec localX, tv; 11819c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 11822a4e142eSMatthew G. Knepley const PetscReal *quadWeights; 11834bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 11844bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 118540e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 11869c3cf19fSMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, cEndInterior, c, field, fieldOffset; 1187ca3d3a14SMatthew G. Knepley PetscBool transform; 1188cb1e1211SMatthew G Knepley PetscErrorCode ierr; 1189cb1e1211SMatthew G Knepley 1190cb1e1211SMatthew G Knepley PetscFunctionBegin; 1191c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 11927318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 11934bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 1194e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 119540e14135SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 119640e14135SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 119740e14135SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 119840e14135SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1199ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 1200ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 1201ca3d3a14SMatthew G. Knepley ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr); 1202652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 12030f2d7e86SMatthew G. Knepley PetscFE fe; 120440e14135SMatthew G. Knepley PetscInt Nc; 1205652b88e8SMatthew G. Knepley 120644a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, (PetscObject *) &fe);CHKERRQ(ierr); 12070f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 12080f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 120940e14135SMatthew G. Knepley numComponents += Nc; 1210652b88e8SMatthew G. Knepley } 12112a4e142eSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights);CHKERRQ(ierr); 1212beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 12134d6f44ffSToby Isaac /* ierr = DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */ 12144bee2e38SMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,coordDim*Nq,&coords,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ,numComponents*coordDim,&interpolant,Nq,&fegeom.detJ);CHKERRQ(ierr); 121540e14135SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 12169ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 12179ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 121840e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 121940e14135SMatthew G. Knepley PetscScalar *x = NULL; 122040e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 12219c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1222652b88e8SMatthew G. Knepley 12234bee2e38SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 122440e14135SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 122540e14135SMatthew G. Knepley 12269c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 12270f2d7e86SMatthew G. Knepley PetscFE fe; 122851259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 12299c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 123040e14135SMatthew G. Knepley 123144a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, (PetscObject *) &fe);CHKERRQ(ierr); 12320f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 12339c3cf19fSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 123440e14135SMatthew G. Knepley if (debug) { 123540e14135SMatthew G. Knepley char title[1024]; 123640e14135SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 12379c3cf19fSMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr); 1238652b88e8SMatthew G. Knepley } 12399c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 12402a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 12412a4e142eSMatthew G. Knepley 12422a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 12432a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 12442a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 12452a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 12464bee2e38SMatthew G. Knepley if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", fegeom.detJ[q], c, q); 1247d3a7d86cSMatthew G. Knepley if (transform) { 1248d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*Nq]; 1249d3a7d86cSMatthew G. Knepley ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr); 1250d3a7d86cSMatthew G. Knepley } else { 1251d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*q]; 1252d3a7d86cSMatthew G. Knepley } 12534bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx); 1254e735a8a9SMatthew G. Knepley if (ierr) { 1255e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1256e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1257e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 12584bee2e38SMatthew G. Knepley ierr2 = PetscFree6(funcVal,coords,fegeom.J,fegeom.invJ,interpolant,fegeom.detJ);CHKERRQ(ierr2); 1259e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1260e735a8a9SMatthew G. Knepley } 1261ca3d3a14SMatthew G. Knepley if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);} 12622a4e142eSMatthew G. Knepley ierr = PetscFEInterpolateGradient_Static(fe, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr); 12634bee2e38SMatthew G. Knepley /* Overwrite with the dot product if the normal is given */ 12644bee2e38SMatthew G. Knepley if (n) { 12654bee2e38SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 12664bee2e38SMatthew G. Knepley PetscScalar sum = 0.0; 12674bee2e38SMatthew G. Knepley PetscInt d; 12684bee2e38SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += interpolant[fc*dim+d]*n[d]; 12694bee2e38SMatthew G. Knepley interpolant[fc] = sum; 12704bee2e38SMatthew G. Knepley } 12714bee2e38SMatthew G. Knepley } 12729c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1273beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 12744bee2e38SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %D fieldDer %D,%D diff %g\n", c, field, fc, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]);CHKERRQ(ierr);} 12754bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 127640e14135SMatthew G. Knepley } 127740e14135SMatthew G. Knepley } 12789c3cf19fSMatthew G. Knepley fieldOffset += Nb; 12799c3cf19fSMatthew G. Knepley qc += Nc; 128040e14135SMatthew G. Knepley } 128140e14135SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 128240e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 128340e14135SMatthew G. Knepley localDiff += elemDiff; 128440e14135SMatthew G. Knepley } 12854bee2e38SMatthew G. Knepley ierr = PetscFree6(funcVal,coords,fegeom.J,fegeom.invJ,interpolant,fegeom.detJ);CHKERRQ(ierr); 128640e14135SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1287b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 128840e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 1289cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1290cb1e1211SMatthew G Knepley } 1291cb1e1211SMatthew G Knepley 1292c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 129373d901b8SMatthew G. Knepley { 12940f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1295ca3d3a14SMatthew G. Knepley DM tdm; 129673d901b8SMatthew G. Knepley PetscSection section; 129773d901b8SMatthew G. Knepley PetscQuadrature quad; 1298ca3d3a14SMatthew G. Knepley Vec localX, tv; 12994bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 130015496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 13014bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 130273d901b8SMatthew G. Knepley PetscReal *localDiff; 130315496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 13049c3cf19fSMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 1305ca3d3a14SMatthew G. Knepley PetscBool transform; 130673d901b8SMatthew G. Knepley PetscErrorCode ierr; 130773d901b8SMatthew G. Knepley 130873d901b8SMatthew G. Knepley PetscFunctionBegin; 1309c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 13107318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 1311e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 131273d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 131373d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 1314ca3d3a14SMatthew G. Knepley ierr = VecSet(localX, 0.0);CHKERRQ(ierr); 131573d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 131673d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1317ca3d3a14SMatthew G. Knepley ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 1318ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 1319ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 1320ca3d3a14SMatthew G. Knepley ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr); 132173d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 132215496722SMatthew G. Knepley PetscObject obj; 132315496722SMatthew G. Knepley PetscClassId id; 132473d901b8SMatthew G. Knepley PetscInt Nc; 132573d901b8SMatthew G. Knepley 132644a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 132715496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 132815496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 132915496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 133015496722SMatthew G. Knepley 13310f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 13320f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 133315496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 133415496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 133515496722SMatthew G. Knepley 133615496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 133715496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 133815496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 133973d901b8SMatthew G. Knepley numComponents += Nc; 134073d901b8SMatthew G. Knepley } 13419c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 1342beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 13432a4e142eSMatthew G. Knepley ierr = PetscCalloc7(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,coordDim*(Nq+1),&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ);CHKERRQ(ierr); 134473d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 13459ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 13469ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 134773d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 134873d901b8SMatthew G. Knepley PetscScalar *x = NULL; 13499c3cf19fSMatthew G. Knepley PetscInt qc = 0; 135073d901b8SMatthew G. Knepley 13512a4e142eSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 135273d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 135373d901b8SMatthew G. Knepley 135415496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 135515496722SMatthew G. Knepley PetscObject obj; 135615496722SMatthew G. Knepley PetscClassId id; 135773d901b8SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 135815496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 135973d901b8SMatthew G. Knepley 136015496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 136115496722SMatthew G. Knepley 136244a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 136315496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 136415496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 136515496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 136615496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 136773d901b8SMatthew G. Knepley if (debug) { 136873d901b8SMatthew G. Knepley char title[1024]; 136973d901b8SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 1370ca3d3a14SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr); 137173d901b8SMatthew G. Knepley } 13727318780aSToby Isaac for (q = 0; q < Nq; ++q) { 13732a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 13742a4e142eSMatthew G. Knepley 13752a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 13762a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 13772a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 13782a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 13794bee2e38SMatthew G. Knepley if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature point %D", fegeom.detJ, c, q); 1380d3a7d86cSMatthew G. Knepley if (transform) { 1381d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*Nq]; 1382d3a7d86cSMatthew G. Knepley ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr); 1383d3a7d86cSMatthew G. Knepley } else { 1384d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim*q]; 1385d3a7d86cSMatthew G. Knepley } 13864bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1387e735a8a9SMatthew G. Knepley if (ierr) { 1388e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1389e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1390e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 13912a4e142eSMatthew G. Knepley ierr2 = PetscFree7(localDiff,funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr2); 1392e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1393e735a8a9SMatthew G. Knepley } 1394ca3d3a14SMatthew G. Knepley if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);} 13952a4e142eSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr);} 139615496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 139715496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 139815496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1399beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 14004bee2e38SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %D field %D,%D point %g %g %g diff %g\n", c, field, fc, coordDim > 0 ? coords[coordDim*q] : 0., coordDim > 1 ? coords[coordDim*q+1] : 0., coordDim > 2 ? coords[coordDim*q+2] : 0., PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]);CHKERRQ(ierr);} 14014bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 140273d901b8SMatthew G. Knepley } 140373d901b8SMatthew G. Knepley } 1404beaa55a6SMatthew G. Knepley fieldOffset += Nb; 14059c3cf19fSMatthew G. Knepley qc += Nc; 140673d901b8SMatthew G. Knepley localDiff[field] += elemDiff; 1407ca3d3a14SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d cum diff %g\n", c, field, localDiff[field]);CHKERRQ(ierr);} 140873d901b8SMatthew G. Knepley } 140973d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 141073d901b8SMatthew G. Knepley } 141173d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1412b2566f29SBarry Smith ierr = MPIU_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 141373d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]); 14142a4e142eSMatthew G. Knepley ierr = PetscFree7(localDiff,funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr); 141573d901b8SMatthew G. Knepley PetscFunctionReturn(0); 141673d901b8SMatthew G. Knepley } 141773d901b8SMatthew G. Knepley 1418e729f68cSMatthew G. Knepley /*@C 1419e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1420e729f68cSMatthew G. Knepley 1421*d083f849SBarry Smith Collective on dm 1422c0f8e1fdSMatthew G. Knepley 1423e729f68cSMatthew G. Knepley Input Parameters: 1424e729f68cSMatthew G. Knepley + dm - The DM 14250163fd50SMatthew G. Knepley . time - The time 1426ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 1427e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1428e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1429e729f68cSMatthew G. Knepley 1430e729f68cSMatthew G. Knepley Output Parameter: 1431e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 1432e729f68cSMatthew G. Knepley 1433e729f68cSMatthew G. Knepley Level: developer 1434e729f68cSMatthew G. Knepley 1435b698f381SToby Isaac .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 1436e729f68cSMatthew G. Knepley @*/ 14370163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1438e729f68cSMatthew G. Knepley { 1439e729f68cSMatthew G. Knepley PetscSection section; 1440e729f68cSMatthew G. Knepley PetscQuadrature quad; 1441e729f68cSMatthew G. Knepley Vec localX; 14424bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 1443e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 14444bee2e38SMatthew G. Knepley PetscReal *coords; 1445e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 14469c3cf19fSMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 1447e729f68cSMatthew G. Knepley PetscErrorCode ierr; 1448e729f68cSMatthew G. Knepley 1449e729f68cSMatthew G. Knepley PetscFunctionBegin; 1450e729f68cSMatthew G. Knepley ierr = VecSet(D, 0.0);CHKERRQ(ierr); 1451e729f68cSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 14527318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 1453e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 1454e729f68cSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 1455e729f68cSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 1456bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 1457e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1458e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1459e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1460e729f68cSMatthew G. Knepley PetscObject obj; 1461e729f68cSMatthew G. Knepley PetscClassId id; 1462e729f68cSMatthew G. Knepley PetscInt Nc; 1463e729f68cSMatthew G. Knepley 146444a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 1465e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1466e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1467e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1468e729f68cSMatthew G. Knepley 1469e729f68cSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 1470e729f68cSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 1471e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1472e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 1473e729f68cSMatthew G. Knepley 1474e729f68cSMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 1475e729f68cSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 1476e729f68cSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1477e729f68cSMatthew G. Knepley numComponents += Nc; 1478e729f68cSMatthew G. Knepley } 14799c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 1480beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 14812a4e142eSMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ);CHKERRQ(ierr); 1482e729f68cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1483e729f68cSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 1484e729f68cSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 1485e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1486e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 14876f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 14889c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1489e729f68cSMatthew G. Knepley 14902a4e142eSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 1491e729f68cSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1492e729f68cSMatthew G. Knepley 1493e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1494e729f68cSMatthew G. Knepley PetscObject obj; 1495e729f68cSMatthew G. Knepley PetscClassId id; 1496e729f68cSMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 1497e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1498e729f68cSMatthew G. Knepley 149944a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 1500e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1501e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 1502e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 1503e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 150423f34ed2SToby Isaac if (funcs[field]) { 15057318780aSToby Isaac for (q = 0; q < Nq; ++q) { 15062a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 15072a4e142eSMatthew G. Knepley 15082a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 15092a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 15102a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 15112a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 15124bee2e38SMatthew G. Knepley if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", (double)fegeom.detJ[q], c, q); 1513274e8aaeSMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], Nc, funcVal, ctx); 1514e735a8a9SMatthew G. Knepley if (ierr) { 1515e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1516e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 15172a4e142eSMatthew G. Knepley ierr2 = PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr2); 1518e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 1519e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1520e735a8a9SMatthew G. Knepley } 15212a4e142eSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr);} 1522e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 1523e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1524e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1525beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 15264bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*fegeom.detJ[q]; 1527e729f68cSMatthew G. Knepley } 1528e729f68cSMatthew G. Knepley } 152923f34ed2SToby Isaac } 1530beaa55a6SMatthew G. Knepley fieldOffset += Nb; 15319c3cf19fSMatthew G. Knepley qc += Nc; 1532e729f68cSMatthew G. Knepley } 1533e729f68cSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 153423f34ed2SToby Isaac ierr = VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES);CHKERRQ(ierr); 1535e729f68cSMatthew G. Knepley } 15362a4e142eSMatthew G. Knepley ierr = PetscFree6(funcVal,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr); 1537e729f68cSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1538e729f68cSMatthew G. Knepley ierr = VecSqrtAbs(D);CHKERRQ(ierr); 1539e729f68cSMatthew G. Knepley PetscFunctionReturn(0); 1540e729f68cSMatthew G. Knepley } 1541e729f68cSMatthew G. Knepley 15421555c271SMatthew G. Knepley /*@C 15431555c271SMatthew G. Knepley DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1, and stores it in a Vec. 15441555c271SMatthew G. Knepley 1545*d083f849SBarry Smith Collective on dm 1546c0f8e1fdSMatthew G. Knepley 15471555c271SMatthew G. Knepley Input Parameters: 15481555c271SMatthew G. Knepley + dm - The DM 15491555c271SMatthew G. Knepley - LocX - The coefficient vector u_h 15501555c271SMatthew G. Knepley 15511555c271SMatthew G. Knepley Output Parameter: 15521555c271SMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the gradient 15531555c271SMatthew G. Knepley 155495452b02SPatrick Sanan Notes: 155595452b02SPatrick Sanan Add citation to (Clement, 1975) and definition of the interpolant 15561555c271SMatthew G. Knepley \nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume 15571555c271SMatthew G. Knepley 15581555c271SMatthew G. Knepley Level: developer 15591555c271SMatthew G. Knepley 15601555c271SMatthew G. Knepley .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 15611555c271SMatthew G. Knepley @*/ 15621555c271SMatthew G. Knepley PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 15631555c271SMatthew G. Knepley { 1564db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1565db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 15661555c271SMatthew G. Knepley DM dmC; 15671555c271SMatthew G. Knepley PetscSection section; 15681555c271SMatthew G. Knepley PetscQuadrature quad; 15691555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 15704bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 15714bee2e38SMatthew G. Knepley PetscReal *coords; 15721555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 15731555c271SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, cEndInterior, vStart, vEnd, v, field, fieldOffset; 15741555c271SMatthew G. Knepley PetscErrorCode ierr; 15751555c271SMatthew G. Knepley 15761555c271SMatthew G. Knepley PetscFunctionBegin; 15771555c271SMatthew G. Knepley ierr = VecGetDM(locC, &dmC);CHKERRQ(ierr); 15781555c271SMatthew G. Knepley ierr = VecSet(locC, 0.0);CHKERRQ(ierr); 15791555c271SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 15801555c271SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 15814bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 1582e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 15831555c271SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 15841555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 15851555c271SMatthew G. Knepley PetscObject obj; 15861555c271SMatthew G. Knepley PetscClassId id; 15871555c271SMatthew G. Knepley PetscInt Nc; 15881555c271SMatthew G. Knepley 158944a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 15901555c271SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 15911555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 15921555c271SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 15931555c271SMatthew G. Knepley 15941555c271SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 15951555c271SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 15961555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 15971555c271SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 15981555c271SMatthew G. Knepley 15991555c271SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 16001555c271SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 16011555c271SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 16021555c271SMatthew G. Knepley numComponents += Nc; 16031555c271SMatthew G. Knepley } 16041555c271SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 16051555c271SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 16064bee2e38SMatthew G. Knepley ierr = PetscMalloc6(coordDim*numComponents*2,&gradsum,coordDim*numComponents,&interpolant,coordDim*Nq,&coords,Nq,&fegeom.detJ,coordDim*coordDim*Nq,&fegeom.J,coordDim*coordDim*Nq,&fegeom.invJ);CHKERRQ(ierr); 16071555c271SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 16081555c271SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 16091555c271SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 16101555c271SMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 16111555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 16121555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 16131555c271SMatthew G. Knepley PetscInt *star = NULL; 16141555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 16151555c271SMatthew G. Knepley 16161555c271SMatthew G. Knepley ierr = PetscMemzero(gradsum, coordDim*numComponents * sizeof(PetscScalar));CHKERRQ(ierr); 16171555c271SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 16181555c271SMatthew G. Knepley for (st = 0; st < starSize*2; st += 2) { 16191555c271SMatthew G. Knepley const PetscInt cell = star[st]; 16201555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim*numComponents]; 16211555c271SMatthew G. Knepley PetscScalar *x = NULL; 16221555c271SMatthew G. Knepley PetscReal vol = 0.0; 16231555c271SMatthew G. Knepley 16241555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 16254bee2e38SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ);CHKERRQ(ierr); 16261555c271SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr); 16271555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 16281555c271SMatthew G. Knepley PetscObject obj; 16291555c271SMatthew G. Knepley PetscClassId id; 16301555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 16311555c271SMatthew G. Knepley 16321555c271SMatthew G. Knepley ierr = PetscMemzero(grad, coordDim*numComponents * sizeof(PetscScalar));CHKERRQ(ierr); 163344a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 16341555c271SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 16351555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 16361555c271SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 16371555c271SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 16381555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 16392a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 16402a4e142eSMatthew G. Knepley 16412a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 16422a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q*coordDim*coordDim]; 16432a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q*coordDim*coordDim]; 16442a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 16454bee2e38SMatthew G. Knepley if (fegeom.detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", (double)fegeom.detJ[q], cell, q); 16461555c271SMatthew G. Knepley if (ierr) { 16471555c271SMatthew G. Knepley PetscErrorCode ierr2; 16481555c271SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr2); 16491555c271SMatthew G. Knepley ierr2 = DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr2); 16504bee2e38SMatthew G. Knepley ierr2 = PetscFree6(gradsum,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr2); 16511555c271SMatthew G. Knepley CHKERRQ(ierr); 16521555c271SMatthew G. Knepley } 16532a4e142eSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolateGradient_Static((PetscFE) obj, &x[fieldOffset], &qgeom, q, interpolant);CHKERRQ(ierr);} 16541555c271SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 16551555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 16561555c271SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+qc+fc]; 16571555c271SMatthew G. Knepley 16584bee2e38SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc*coordDim+d] += interpolant[fc*dim+d]*wt*fegeom.detJ[q]; 16591555c271SMatthew G. Knepley } 16604bee2e38SMatthew G. Knepley vol += quadWeights[q*qNc]*fegeom.detJ[q]; 16611555c271SMatthew G. Knepley } 16621555c271SMatthew G. Knepley fieldOffset += Nb; 16631555c271SMatthew G. Knepley qc += Nc; 16641555c271SMatthew G. Knepley } 16651555c271SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr); 1666f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 1667f8527842SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 1668f8527842SMatthew G. Knepley gradsum[fc*coordDim+d] += grad[fc*coordDim+d]; 1669f8527842SMatthew G. Knepley } 1670f8527842SMatthew G. Knepley } 1671f8527842SMatthew G. Knepley volsum += vol; 1672db1066baSMatthew G. Knepley if (debug) { 16736d20ae03SJed Brown ierr = PetscPrintf(PETSC_COMM_SELF, "Cell %D gradient: [", cell);CHKERRQ(ierr); 16741555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 16751555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 16761555c271SMatthew G. Knepley if (fc || d > 0) {ierr = PetscPrintf(PETSC_COMM_SELF, ", ");CHKERRQ(ierr);} 16776d20ae03SJed Brown ierr = PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc*coordDim+d]));CHKERRQ(ierr); 16781555c271SMatthew G. Knepley } 16791555c271SMatthew G. Knepley } 16801555c271SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_SELF, "]\n");CHKERRQ(ierr); 1681db1066baSMatthew G. Knepley } 16821555c271SMatthew G. Knepley } 16831555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 16841555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc*coordDim+d] /= volsum; 16851555c271SMatthew G. Knepley } 16861555c271SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 16871555c271SMatthew G. Knepley ierr = DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES);CHKERRQ(ierr); 16881555c271SMatthew G. Knepley } 16894bee2e38SMatthew G. Knepley ierr = PetscFree6(gradsum,interpolant,coords,fegeom.detJ,fegeom.J,fegeom.invJ);CHKERRQ(ierr); 16901555c271SMatthew G. Knepley PetscFunctionReturn(0); 16911555c271SMatthew G. Knepley } 16921555c271SMatthew G. Knepley 1693338f77d5SMatthew G. Knepley static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 169473d901b8SMatthew G. Knepley { 1695338f77d5SMatthew G. Knepley DM dmAux = NULL; 169661aaff12SToby Isaac PetscDS prob, probAux = NULL; 169773d901b8SMatthew G. Knepley PetscSection section, sectionAux; 1698338f77d5SMatthew G. Knepley Vec locX, locA; 1699c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 1700c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 1701338f77d5SMatthew G. Knepley /* DS */ 1702338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 1703338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 1704338f77d5SMatthew G. Knepley PetscScalar *u, *a; 1705338f77d5SMatthew G. Knepley const PetscScalar *constants; 1706338f77d5SMatthew G. Knepley /* Geometry */ 1707c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 1708338f77d5SMatthew G. Knepley DM dmGrad; 1709c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 1710338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 1711b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 1712338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 1713b7260050SToby Isaac PetscInt maxDegree; 1714c330f8ffSToby Isaac DMField coordField; 1715c330f8ffSToby Isaac IS cellIS; 171673d901b8SMatthew G. Knepley PetscErrorCode ierr; 171773d901b8SMatthew G. Knepley 171873d901b8SMatthew G. Knepley PetscFunctionBegin; 1719338f77d5SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 1720c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1721e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 172273d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 1723338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 1724b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1725b5a3613cSMatthew G. Knepley PetscObject obj; 1726b5a3613cSMatthew G. Knepley PetscClassId id; 1727b5a3613cSMatthew G. Knepley 1728b5a3613cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1729b5a3613cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1730338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 1731338f77d5SMatthew G. Knepley } 1732338f77d5SMatthew G. Knepley /* Get local solution with boundary values */ 1733338f77d5SMatthew G. Knepley ierr = DMGetLocalVector(dm, &locX);CHKERRQ(ierr); 1734338f77d5SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 1735338f77d5SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 1736338f77d5SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 1737338f77d5SMatthew G. Knepley /* Read DS information */ 1738338f77d5SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 1739338f77d5SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 1740338f77d5SMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 1741c330f8ffSToby Isaac ierr = ISCreateStride(PETSC_COMM_SELF,numCells,cStart,1,&cellIS);CHKERRQ(ierr); 1742338f77d5SMatthew G. Knepley ierr = PetscDSGetConstants(prob, &numConstants, &constants);CHKERRQ(ierr); 1743338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 1744338f77d5SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 1745338f77d5SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr); 1746338f77d5SMatthew G. Knepley if (dmAux) { 1747338f77d5SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 1748338f77d5SMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 1749e87a4003SBarry Smith ierr = DMGetSection(dmAux, §ionAux);CHKERRQ(ierr); 1750338f77d5SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 1751338f77d5SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 1752338f77d5SMatthew G. Knepley } 1753338f77d5SMatthew G. Knepley /* Allocate data arrays */ 1754338f77d5SMatthew G. Knepley ierr = PetscCalloc1(numCells*totDim, &u);CHKERRQ(ierr); 1755338f77d5SMatthew G. Knepley if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);} 1756338f77d5SMatthew G. Knepley /* Read out geometry */ 1757c330f8ffSToby Isaac ierr = DMGetCoordinateField(dm,&coordField);CHKERRQ(ierr); 1758b7260050SToby Isaac ierr = DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree);CHKERRQ(ierr); 1759b7260050SToby Isaac if (maxDegree <= 1) { 1760c330f8ffSToby Isaac ierr = DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad);CHKERRQ(ierr); 1761c330f8ffSToby Isaac if (affineQuad) { 1762c330f8ffSToby Isaac ierr = DMFieldCreateFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&cgeomFEM);CHKERRQ(ierr); 1763338f77d5SMatthew G. Knepley } 1764b5a3613cSMatthew G. Knepley } 1765b5a3613cSMatthew G. Knepley if (useFVM) { 1766338f77d5SMatthew G. Knepley PetscFV fv = NULL; 1767b5a3613cSMatthew G. Knepley Vec grad; 1768b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 1769b5a3613cSMatthew G. Knepley PetscBool compGrad; 1770b5a3613cSMatthew G. Knepley 1771338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1772338f77d5SMatthew G. Knepley PetscObject obj; 1773338f77d5SMatthew G. Knepley PetscClassId id; 1774338f77d5SMatthew G. Knepley 1775338f77d5SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1776338f77d5SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1777338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) {fv = (PetscFV) obj; break;} 1778338f77d5SMatthew G. Knepley } 1779338f77d5SMatthew G. Knepley ierr = PetscFVGetComputeGradients(fv, &compGrad);CHKERRQ(ierr); 1780338f77d5SMatthew G. Knepley ierr = PetscFVSetComputeGradients(fv, PETSC_TRUE);CHKERRQ(ierr); 1781b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM);CHKERRQ(ierr); 1782338f77d5SMatthew G. Knepley ierr = DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad);CHKERRQ(ierr); 1783338f77d5SMatthew G. Knepley ierr = PetscFVSetComputeGradients(fv, compGrad);CHKERRQ(ierr); 1784b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1785b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 1786b5a3613cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 1787b5a3613cSMatthew G. Knepley ierr = DMGetGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1788338f77d5SMatthew G. Knepley ierr = DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad);CHKERRQ(ierr); 1789b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 1790b5a3613cSMatthew G. Knepley ierr = DMGetLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1791b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1792b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1793b5a3613cSMatthew G. Knepley ierr = DMRestoreGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1794b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 1795338f77d5SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad);CHKERRQ(ierr); 1796b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1797b5a3613cSMatthew G. Knepley } 1798338f77d5SMatthew G. Knepley /* Read out data from inputs */ 179973d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 180073d901b8SMatthew G. Knepley PetscScalar *x = NULL; 180173d901b8SMatthew G. Knepley PetscInt i; 180273d901b8SMatthew G. Knepley 1803338f77d5SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, locX, c, NULL, &x);CHKERRQ(ierr); 18040f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 1805338f77d5SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x);CHKERRQ(ierr); 180673d901b8SMatthew G. Knepley if (dmAux) { 1807338f77d5SMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x);CHKERRQ(ierr); 18080f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 1809338f77d5SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x);CHKERRQ(ierr); 181073d901b8SMatthew G. Knepley } 181173d901b8SMatthew G. Knepley } 1812338f77d5SMatthew G. Knepley /* Do integration for each field */ 181373d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1814c1f031eeSMatthew G. Knepley PetscObject obj; 1815c1f031eeSMatthew G. Knepley PetscClassId id; 1816c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 181773d901b8SMatthew G. Knepley 1818c1f031eeSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1819c1f031eeSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1820c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1821c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1822c1f031eeSMatthew G. Knepley PetscQuadrature q; 1823c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 1824c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 1825c1f031eeSMatthew G. Knepley 18260f2d7e86SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 1827c1f031eeSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 18289c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 1829c1f031eeSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 1830c1f031eeSMatthew G. Knepley blockSize = Nb*Nq; 183173d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 18320f2d7e86SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 183373d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 183473d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 183573d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 183673d901b8SMatthew G. Knepley offset = numCells - Nr; 1837c330f8ffSToby Isaac if (!affineQuad) { 1838c330f8ffSToby Isaac ierr = DMFieldCreateFEGeom(coordField,cellIS,q,PETSC_FALSE,&cgeomFEM);CHKERRQ(ierr); 1839c330f8ffSToby Isaac } 1840c330f8ffSToby Isaac ierr = PetscFEGeomGetChunk(cgeomFEM,0,offset,&chunkGeom);CHKERRQ(ierr); 18414bee2e38SMatthew G. Knepley ierr = PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral);CHKERRQ(ierr); 1842c330f8ffSToby Isaac ierr = PetscFEGeomGetChunk(cgeomFEM,offset,numCells,&chunkGeom);CHKERRQ(ierr); 18434bee2e38SMatthew G. Knepley ierr = PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset*totDim], probAux, &a[offset*totDimAux], &cintegral[offset*Nf]);CHKERRQ(ierr); 1844c330f8ffSToby Isaac ierr = PetscFEGeomRestoreChunk(cgeomFEM,offset,numCells,&chunkGeom);CHKERRQ(ierr); 1845c330f8ffSToby Isaac if (!affineQuad) { 1846c330f8ffSToby Isaac ierr = PetscFEGeomDestroy(&cgeomFEM);CHKERRQ(ierr); 1847c330f8ffSToby Isaac } 1848c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1849c1f031eeSMatthew G. Knepley PetscInt foff; 1850420e96edSMatthew G. Knepley PetscPointFunc obj_func; 1851b69edc29SMatthew G. Knepley PetscScalar lint; 1852c1f031eeSMatthew G. Knepley 1853c1f031eeSMatthew G. Knepley ierr = PetscDSGetObjective(prob, f, &obj_func);CHKERRQ(ierr); 1854c1f031eeSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, f, &foff);CHKERRQ(ierr); 1855c1f031eeSMatthew G. Knepley if (obj_func) { 1856c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 1857b5a3613cSMatthew G. Knepley PetscScalar *u_x; 1858b5a3613cSMatthew G. Knepley 1859b5a3613cSMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x);CHKERRQ(ierr); 1860338f77d5SMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, &a[totDimAux*c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 1861338f77d5SMatthew G. Knepley cintegral[c*Nf+f] += PetscRealPart(lint)*cgeomFVM[c].volume; 186273d901b8SMatthew G. Knepley } 1863c1f031eeSMatthew G. Knepley } 1864c1f031eeSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 1865c1f031eeSMatthew G. Knepley } 1866338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 1867b5a3613cSMatthew G. Knepley if (useFVM) { 1868b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1869b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1870b5a3613cSMatthew G. Knepley ierr = DMRestoreLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1871b5a3613cSMatthew G. Knepley ierr = VecDestroy(&faceGeometryFVM);CHKERRQ(ierr); 1872b5a3613cSMatthew G. Knepley ierr = VecDestroy(&cellGeometryFVM);CHKERRQ(ierr); 1873b5a3613cSMatthew G. Knepley ierr = DMDestroy(&dmGrad);CHKERRQ(ierr); 1874b5a3613cSMatthew G. Knepley } 187573d901b8SMatthew G. Knepley if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);} 1876338f77d5SMatthew G. Knepley ierr = PetscFree(u);CHKERRQ(ierr); 1877338f77d5SMatthew G. Knepley /* Cleanup */ 1878f99c8401SToby Isaac if (affineQuad) { 1879f99c8401SToby Isaac ierr = PetscFEGeomDestroy(&cgeomFEM);CHKERRQ(ierr); 1880f99c8401SToby Isaac } 1881f99c8401SToby Isaac ierr = PetscQuadratureDestroy(&affineQuad);CHKERRQ(ierr); 1882c330f8ffSToby Isaac ierr = ISDestroy(&cellIS);CHKERRQ(ierr); 1883338f77d5SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &locX);CHKERRQ(ierr); 1884338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 1885338f77d5SMatthew G. Knepley } 1886338f77d5SMatthew G. Knepley 1887338f77d5SMatthew G. Knepley /*@ 1888338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 1889338f77d5SMatthew G. Knepley 1890338f77d5SMatthew G. Knepley Input Parameters: 1891338f77d5SMatthew G. Knepley + dm - The mesh 1892338f77d5SMatthew G. Knepley . X - Global input vector 1893338f77d5SMatthew G. Knepley - user - The user context 1894338f77d5SMatthew G. Knepley 1895338f77d5SMatthew G. Knepley Output Parameter: 1896338f77d5SMatthew G. Knepley . integral - Integral for each field 1897338f77d5SMatthew G. Knepley 1898338f77d5SMatthew G. Knepley Level: developer 1899338f77d5SMatthew G. Knepley 1900338f77d5SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 1901338f77d5SMatthew G. Knepley @*/ 1902b8feb594SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 1903338f77d5SMatthew G. Knepley { 1904338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1905b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 1906338f77d5SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cEndInterior[4], cell; 1907338f77d5SMatthew G. Knepley PetscErrorCode ierr; 1908338f77d5SMatthew G. Knepley 1909338f77d5SMatthew G. Knepley PetscFunctionBegin; 1910338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1911338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 1912338f77d5SMatthew G. Knepley PetscValidPointer(integral, 3); 1913338f77d5SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 1914338f77d5SMatthew G. Knepley ierr = DMGetNumFields(dm, &Nf);CHKERRQ(ierr); 1915338f77d5SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 1916338f77d5SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 1917338f77d5SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior[0], &cEndInterior[1], &cEndInterior[2], &cEndInterior[3]);CHKERRQ(ierr); 1918338f77d5SMatthew G. Knepley cEnd = cEndInterior[cellHeight] < 0 ? cEnd : cEndInterior[cellHeight]; 1919338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 1920338f77d5SMatthew G. Knepley ierr = PetscCalloc2(Nf, &lintegral, (cEnd-cStart)*Nf, &cintegral);CHKERRQ(ierr); 1921338f77d5SMatthew G. Knepley ierr = DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user);CHKERRQ(ierr); 1922338f77d5SMatthew G. Knepley /* Sum up values */ 1923338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 1924338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 1925338f77d5SMatthew G. Knepley 1926338f77d5SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf]);CHKERRQ(ierr);} 1927b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c*Nf+f]; 1928338f77d5SMatthew G. Knepley } 1929b8feb594SMatthew G. Knepley ierr = MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject) dm));CHKERRQ(ierr); 193073d901b8SMatthew G. Knepley if (mesh->printFEM) { 1931338f77d5SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Integral:");CHKERRQ(ierr); 1932b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", (double) PetscRealPart(integral[f]));CHKERRQ(ierr);} 193373d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr); 193473d901b8SMatthew G. Knepley } 1935338f77d5SMatthew G. Knepley ierr = PetscFree2(lintegral, cintegral);CHKERRQ(ierr); 1936338f77d5SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 1937338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 1938338f77d5SMatthew G. Knepley } 1939338f77d5SMatthew G. Knepley 1940338f77d5SMatthew G. Knepley /*@ 1941338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 1942338f77d5SMatthew G. Knepley 1943338f77d5SMatthew G. Knepley Input Parameters: 1944338f77d5SMatthew G. Knepley + dm - The mesh 1945338f77d5SMatthew G. Knepley . X - Global input vector 1946338f77d5SMatthew G. Knepley - user - The user context 1947338f77d5SMatthew G. Knepley 1948338f77d5SMatthew G. Knepley Output Parameter: 1949338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field 1950338f77d5SMatthew G. Knepley 1951338f77d5SMatthew G. Knepley Level: developer 1952338f77d5SMatthew G. Knepley 1953338f77d5SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 1954338f77d5SMatthew G. Knepley @*/ 1955338f77d5SMatthew G. Knepley PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 1956338f77d5SMatthew G. Knepley { 1957338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1958338f77d5SMatthew G. Knepley DM dmF; 1959338f77d5SMatthew G. Knepley PetscSection sectionF; 1960338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 1961338f77d5SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cEndInterior[4], cell; 1962338f77d5SMatthew G. Knepley PetscErrorCode ierr; 1963338f77d5SMatthew G. Knepley 1964338f77d5SMatthew G. Knepley PetscFunctionBegin; 1965338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1966338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 1967338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 1968338f77d5SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 1969338f77d5SMatthew G. Knepley ierr = DMGetNumFields(dm, &Nf);CHKERRQ(ierr); 1970338f77d5SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 1971338f77d5SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 1972338f77d5SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior[0], &cEndInterior[1], &cEndInterior[2], &cEndInterior[3]);CHKERRQ(ierr); 1973338f77d5SMatthew G. Knepley cEnd = cEndInterior[cellHeight] < 0 ? cEnd : cEndInterior[cellHeight]; 1974338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 1975338f77d5SMatthew G. Knepley ierr = PetscCalloc1((cEnd-cStart)*Nf, &cintegral);CHKERRQ(ierr); 1976338f77d5SMatthew G. Knepley ierr = DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user);CHKERRQ(ierr); 1977338f77d5SMatthew G. Knepley /* Put values in F*/ 1978338f77d5SMatthew G. Knepley ierr = VecGetDM(F, &dmF);CHKERRQ(ierr); 1979e87a4003SBarry Smith ierr = DMGetSection(dmF, §ionF);CHKERRQ(ierr); 1980338f77d5SMatthew G. Knepley ierr = VecGetArray(F, &af);CHKERRQ(ierr); 1981338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 1982338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 1983338f77d5SMatthew G. Knepley PetscInt dof, off; 1984338f77d5SMatthew G. Knepley 1985338f77d5SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf]);CHKERRQ(ierr);} 1986338f77d5SMatthew G. Knepley ierr = PetscSectionGetDof(sectionF, cell, &dof);CHKERRQ(ierr); 1987338f77d5SMatthew G. Knepley ierr = PetscSectionGetOffset(sectionF, cell, &off);CHKERRQ(ierr); 1988338f77d5SMatthew G. Knepley if (dof != Nf) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %D != %D", dof, Nf); 1989338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off+f] = cintegral[c*Nf+f]; 1990338f77d5SMatthew G. Knepley } 1991338f77d5SMatthew G. Knepley ierr = VecRestoreArray(F, &af);CHKERRQ(ierr); 1992338f77d5SMatthew G. Knepley ierr = PetscFree(cintegral);CHKERRQ(ierr); 1993c1f031eeSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 199473d901b8SMatthew G. Knepley PetscFunctionReturn(0); 199573d901b8SMatthew G. Knepley } 199673d901b8SMatthew G. Knepley 19979b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, 19989b6f715bSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 199964c72086SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 200064c72086SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 200164c72086SMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 200264c72086SMatthew G. Knepley PetscScalar *fintegral, void *user) 200364c72086SMatthew G. Knepley { 20049b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 20059b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 20069b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 20079b6f715bSMatthew G. Knepley Vec locA = NULL; 20089b6f715bSMatthew G. Knepley DMField coordField; 20099b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 20109b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 20119b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 201264c72086SMatthew G. Knepley const PetscScalar *constants; 20139b6f715bSMatthew G. Knepley PetscInt numConstants, f; 201464c72086SMatthew G. Knepley PetscErrorCode ierr; 201564c72086SMatthew G. Knepley 201664c72086SMatthew G. Knepley PetscFunctionBegin; 20179b6f715bSMatthew G. Knepley ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr); 20189b6f715bSMatthew G. Knepley ierr = DMConvert(dm, DMPLEX, &plex);CHKERRQ(ierr); 201964c72086SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 202064c72086SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 202164c72086SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 202264c72086SMatthew G. Knepley /* Determine which discretizations we have */ 20239b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 202464c72086SMatthew G. Knepley PetscObject obj; 202564c72086SMatthew G. Knepley PetscClassId id; 202664c72086SMatthew G. Knepley 20279b6f715bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 202864c72086SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 20299b6f715bSMatthew G. Knepley if (id == PETSCFV_CLASSID) SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Not supported for FVM (field %D)", f); 203064c72086SMatthew G. Knepley } 203164c72086SMatthew G. Knepley /* Read DS information */ 203264c72086SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 203364c72086SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 203464c72086SMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 203564c72086SMatthew G. Knepley ierr = PetscDSGetConstants(prob, &numConstants, &constants);CHKERRQ(ierr); 203664c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 203764c72086SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr); 20389b6f715bSMatthew G. Knepley if (locA) { 20399b6f715bSMatthew G. Knepley DM dmAux; 20409b6f715bSMatthew G. Knepley 20419b6f715bSMatthew G. Knepley ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr); 20429b6f715bSMatthew G. Knepley ierr = DMConvert(dmAux, DMPLEX, &plexA);CHKERRQ(ierr); 204364c72086SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 204464c72086SMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 204564c72086SMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 204664c72086SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 204764c72086SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 204864c72086SMatthew G. Knepley } 20499b6f715bSMatthew G. Knepley /* Integrate over points */ 20509b6f715bSMatthew G. Knepley { 20519b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 2052b7260050SToby Isaac PetscInt maxDegree; 20539b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 20549b6f715bSMatthew G. Knepley const PetscInt *points; 20559b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 20569b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 205764c72086SMatthew G. Knepley 20589b6f715bSMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &numFaces);CHKERRQ(ierr); 20599b6f715bSMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 20609b6f715bSMatthew G. Knepley ierr = PetscCalloc2(numFaces*totDim, &u, locA ? numFaces*totDimAux : 0, &a);CHKERRQ(ierr); 2061b7260050SToby Isaac ierr = DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree);CHKERRQ(ierr); 206264c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 206364c72086SMatthew G. Knepley PetscFE fe; 206464c72086SMatthew G. Knepley 206564c72086SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fe);CHKERRQ(ierr); 2066b7260050SToby Isaac if (maxDegree <= 1) {ierr = DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom);CHKERRQ(ierr);} 20679b6f715bSMatthew G. Knepley if (!qGeom) { 20689b6f715bSMatthew G. Knepley ierr = PetscFEGetFaceQuadrature(fe, &qGeom);CHKERRQ(ierr); 20699b6f715bSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) qGeom);CHKERRQ(ierr); 20709b6f715bSMatthew G. Knepley } 20719b6f715bSMatthew G. Knepley ierr = PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 20729b6f715bSMatthew G. Knepley ierr = DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom);CHKERRQ(ierr); 20739b6f715bSMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 20749b6f715bSMatthew G. Knepley const PetscInt point = points[face], *support, *cone; 20759b6f715bSMatthew G. Knepley PetscScalar *x = NULL; 20769b6f715bSMatthew G. Knepley PetscInt i, coneSize, faceLoc; 20779b6f715bSMatthew G. Knepley 20789b6f715bSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 20799b6f715bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[0], &coneSize);CHKERRQ(ierr); 20809b6f715bSMatthew G. Knepley ierr = DMPlexGetCone(dm, support[0], &cone);CHKERRQ(ierr); 20819b6f715bSMatthew G. Knepley for (faceLoc = 0; faceLoc < coneSize; ++faceLoc) if (cone[faceLoc] == point) break; 20829b6f715bSMatthew G. Knepley if (faceLoc == coneSize) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %D in cone of support[0] %D", face, support[0]); 20839b6f715bSMatthew G. Knepley fgeom->face[face][0] = faceLoc; 20849b6f715bSMatthew G. Knepley ierr = DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x);CHKERRQ(ierr); 20859b6f715bSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face*totDim+i] = x[i]; 20869b6f715bSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x);CHKERRQ(ierr); 20879b6f715bSMatthew G. Knepley if (locA) { 20889b6f715bSMatthew G. Knepley PetscInt subp; 20899b6f715bSMatthew G. Knepley ierr = DMPlexGetSubpoint(plexA, support[0], &subp);CHKERRQ(ierr); 20909b6f715bSMatthew G. Knepley ierr = DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x);CHKERRQ(ierr); 20919b6f715bSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[f*totDimAux+i] = x[i]; 20929b6f715bSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x);CHKERRQ(ierr); 20939b6f715bSMatthew G. Knepley } 20949b6f715bSMatthew G. Knepley } 20959b6f715bSMatthew G. Knepley /* Get blocking */ 20969b6f715bSMatthew G. Knepley { 20979b6f715bSMatthew G. Knepley PetscQuadrature q; 20989b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 20999b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 21009b6f715bSMatthew G. Knepley 210164c72086SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 210264c72086SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 210364c72086SMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 210464c72086SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 210564c72086SMatthew G. Knepley blockSize = Nb*Nq; 210664c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 21079b6f715bSMatthew G. Knepley chunkSize = numBatches*batchSize; 210864c72086SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 21099b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 21109b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 211164c72086SMatthew G. Knepley offset = numFaces - Nr; 211264c72086SMatthew G. Knepley } 21139b6f715bSMatthew G. Knepley /* Do integration for each field */ 21149b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 21159b6f715bSMatthew G. Knepley ierr = PetscFEGeomGetChunk(fgeom, chunk*chunkSize, (chunk+1)*chunkSize, &chunkGeom);CHKERRQ(ierr); 21164bee2e38SMatthew G. Knepley ierr = PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral);CHKERRQ(ierr); 21179b6f715bSMatthew G. Knepley ierr = PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom);CHKERRQ(ierr); 211864c72086SMatthew G. Knepley } 21199b6f715bSMatthew G. Knepley ierr = PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom);CHKERRQ(ierr); 21204bee2e38SMatthew G. Knepley ierr = PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset*totDim], probAux, a ? &a[offset*totDimAux] : NULL, &fintegral[offset*Nf]);CHKERRQ(ierr); 21219b6f715bSMatthew G. Knepley ierr = PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom);CHKERRQ(ierr); 212264c72086SMatthew G. Knepley /* Cleanup data arrays */ 21239b6f715bSMatthew G. Knepley ierr = DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom);CHKERRQ(ierr); 21249b6f715bSMatthew G. Knepley ierr = PetscQuadratureDestroy(&qGeom);CHKERRQ(ierr); 21259b6f715bSMatthew G. Knepley ierr = PetscFree2(u, a);CHKERRQ(ierr); 21269b6f715bSMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 212764c72086SMatthew G. Knepley } 212864c72086SMatthew G. Knepley } 21299b6f715bSMatthew G. Knepley if (plex) {ierr = DMDestroy(&plex);CHKERRQ(ierr);} 21309b6f715bSMatthew G. Knepley if (plexA) {ierr = DMDestroy(&plexA);CHKERRQ(ierr);} 21319b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 21329b6f715bSMatthew G. Knepley } 21339b6f715bSMatthew G. Knepley 21349b6f715bSMatthew G. Knepley /*@ 21359b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 21369b6f715bSMatthew G. Knepley 21379b6f715bSMatthew G. Knepley Input Parameters: 21389b6f715bSMatthew G. Knepley + dm - The mesh 21399b6f715bSMatthew G. Knepley . X - Global input vector 21409b6f715bSMatthew G. Knepley . label - The boundary DMLabel 21419b6f715bSMatthew G. Knepley . numVals - The number of label values to use, or PETSC_DETERMINE for all values 21429b6f715bSMatthew G. Knepley . vals - The label values to use, or PETSC_NULL for all values 21439b6f715bSMatthew G. Knepley . func = The function to integrate along the boundary 21449b6f715bSMatthew G. Knepley - user - The user context 21459b6f715bSMatthew G. Knepley 21469b6f715bSMatthew G. Knepley Output Parameter: 21479b6f715bSMatthew G. Knepley . integral - Integral for each field 21489b6f715bSMatthew G. Knepley 21499b6f715bSMatthew G. Knepley Level: developer 21509b6f715bSMatthew G. Knepley 21519b6f715bSMatthew G. Knepley .seealso: DMPlexComputeIntegralFEM(), DMPlexComputeBdResidualFEM() 21529b6f715bSMatthew G. Knepley @*/ 21539b6f715bSMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], 21549b6f715bSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 21559b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 21569b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 21579b6f715bSMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 21589b6f715bSMatthew G. Knepley PetscScalar *integral, void *user) 21599b6f715bSMatthew G. Knepley { 21609b6f715bSMatthew G. Knepley Vec locX; 21619b6f715bSMatthew G. Knepley PetscSection section; 21629b6f715bSMatthew G. Knepley DMLabel depthLabel; 21639b6f715bSMatthew G. Knepley IS facetIS; 21649b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 21659b6f715bSMatthew G. Knepley PetscErrorCode ierr; 21669b6f715bSMatthew G. Knepley 21679b6f715bSMatthew G. Knepley PetscFunctionBegin; 21689b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21699b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 21709b6f715bSMatthew G. Knepley PetscValidPointer(label, 3); 21719b6f715bSMatthew G. Knepley if (vals) PetscValidPointer(vals, 5); 21729b6f715bSMatthew G. Knepley PetscValidPointer(integral, 6); 21739b6f715bSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 21749b6f715bSMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 21759b6f715bSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 21769b6f715bSMatthew G. Knepley ierr = DMLabelGetStratumIS(depthLabel, dim-1, &facetIS);CHKERRQ(ierr); 21779b6f715bSMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 21789b6f715bSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 21799b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 21809b6f715bSMatthew G. Knepley ierr = DMGetLocalVector(dm, &locX);CHKERRQ(ierr); 21819b6f715bSMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 21829b6f715bSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 21839b6f715bSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 21849b6f715bSMatthew G. Knepley /* Loop over label values */ 21859b6f715bSMatthew G. Knepley ierr = PetscMemzero(integral, Nf * sizeof(PetscScalar));CHKERRQ(ierr); 21869b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 21879b6f715bSMatthew G. Knepley IS pointIS; 21889b6f715bSMatthew G. Knepley PetscInt numFaces, face; 21899b6f715bSMatthew G. Knepley PetscScalar *fintegral; 21909b6f715bSMatthew G. Knepley 21919b6f715bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, vals[v], &pointIS);CHKERRQ(ierr); 21929b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 21939b6f715bSMatthew G. Knepley { 21949b6f715bSMatthew G. Knepley IS isectIS; 21959b6f715bSMatthew G. Knepley 21969b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 21979b6f715bSMatthew G. Knepley ierr = ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS);CHKERRQ(ierr); 21989b6f715bSMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 21999b6f715bSMatthew G. Knepley pointIS = isectIS; 22009b6f715bSMatthew G. Knepley } 22019b6f715bSMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &numFaces);CHKERRQ(ierr); 22029b6f715bSMatthew G. Knepley ierr = PetscCalloc1(numFaces*Nf, &fintegral);CHKERRQ(ierr); 22039b6f715bSMatthew G. Knepley ierr = DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user);CHKERRQ(ierr); 22049b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 22059b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face*Nf+f]; 22069b6f715bSMatthew G. Knepley ierr = PetscFree(fintegral);CHKERRQ(ierr); 22079b6f715bSMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 22089b6f715bSMatthew G. Knepley } 220964c72086SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &locX);CHKERRQ(ierr); 22109b6f715bSMatthew G. Knepley ierr = ISDestroy(&facetIS);CHKERRQ(ierr); 22119b6f715bSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 221264c72086SMatthew G. Knepley PetscFunctionReturn(0); 221364c72086SMatthew G. Knepley } 221464c72086SMatthew G. Knepley 2215d69c5d34SMatthew G. Knepley /*@ 221668132eb9SMatthew G. Knepley DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM. 2217d69c5d34SMatthew G. Knepley 2218d69c5d34SMatthew G. Knepley Input Parameters: 2219d69c5d34SMatthew G. Knepley + dmf - The fine mesh 2220d69c5d34SMatthew G. Knepley . dmc - The coarse mesh 2221d69c5d34SMatthew G. Knepley - user - The user context 2222d69c5d34SMatthew G. Knepley 2223d69c5d34SMatthew G. Knepley Output Parameter: 2224934789fcSMatthew G. Knepley . In - The interpolation matrix 2225d69c5d34SMatthew G. Knepley 2226d69c5d34SMatthew G. Knepley Level: developer 2227d69c5d34SMatthew G. Knepley 222868132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 2229d69c5d34SMatthew G. Knepley @*/ 223068132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, Mat In, void *user) 2231d69c5d34SMatthew G. Knepley { 2232d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 2233d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 22342764a2aaSMatthew G. Knepley PetscDS prob; 2235d69c5d34SMatthew G. Knepley PetscFE *feRef; 223697c42addSMatthew G. Knepley PetscFV *fvRef; 2237d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2238d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2239d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 22409ac3fadcSMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, cEndInterior, c; 22410f2d7e86SMatthew G. Knepley PetscInt cTotDim, rTotDim = 0; 2242d69c5d34SMatthew G. Knepley PetscErrorCode ierr; 2243d69c5d34SMatthew G. Knepley 2244d69c5d34SMatthew G. Knepley PetscFunctionBegin; 2245d69c5d34SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 2246c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 2247e87a4003SBarry Smith ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr); 2248e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 2249e87a4003SBarry Smith ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr); 2250e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 2251d69c5d34SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 2252d69c5d34SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 22539ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 22549ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 22552764a2aaSMatthew G. Knepley ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr); 225697c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 2257d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 225897c42addSMatthew G. Knepley PetscObject obj; 225997c42addSMatthew G. Knepley PetscClassId id; 2260aa7890ccSMatthew G. Knepley PetscInt rNb = 0, Nc = 0; 2261d69c5d34SMatthew G. Knepley 226297c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 226397c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 226497c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 226597c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 226697c42addSMatthew G. Knepley 22670f2d7e86SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 2268d69c5d34SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr); 22690f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 227097c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 227197c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 227297c42addSMatthew G. Knepley PetscDualSpace Q; 227397c42addSMatthew G. Knepley 227497c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 227597c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 227697c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &rNb);CHKERRQ(ierr); 227797c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 227897c42addSMatthew G. Knepley } 22799c3cf19fSMatthew G. Knepley rTotDim += rNb; 2280d69c5d34SMatthew G. Knepley } 22812764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 22820f2d7e86SMatthew G. Knepley ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr); 22830f2d7e86SMatthew G. Knepley ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr); 2284d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2285d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2286d69c5d34SMatthew G. Knepley PetscQuadrature f; 2287d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2288d69c5d34SMatthew G. Knepley PetscReal *points; 2289d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2290d69c5d34SMatthew G. Knepley 2291d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 229297c42addSMatthew G. Knepley if (feRef[fieldI]) { 2293d69c5d34SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr); 22940f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr); 229597c42addSMatthew G. Knepley } else { 229697c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[fieldI], &Qref);CHKERRQ(ierr); 229797c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[fieldI], &Nc);CHKERRQ(ierr); 229897c42addSMatthew G. Knepley } 2299d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr); 2300d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 2301d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 23029c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL);CHKERRQ(ierr); 2303d69c5d34SMatthew G. Knepley npoints += Np; 2304d69c5d34SMatthew G. Knepley } 2305d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr); 2306d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 2307d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 23089c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 2309d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 2310d69c5d34SMatthew G. Knepley } 2311d69c5d34SMatthew G. Knepley 2312d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 231397c42addSMatthew G. Knepley PetscObject obj; 231497c42addSMatthew G. Knepley PetscClassId id; 2315d69c5d34SMatthew G. Knepley PetscReal *B; 23169c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 2317d69c5d34SMatthew G. Knepley 231897c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldJ, &obj);CHKERRQ(ierr); 231997c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 232097c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 232197c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 2322d69c5d34SMatthew G. Knepley 2323d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 23240f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr); 23250f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 2326ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 2327ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 23289c3cf19fSMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %D does not match coarse field %D", Nc, NcJ); 23290f2d7e86SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr); 2330d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 2331d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 23329c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights);CHKERRQ(ierr); 23339c3cf19fSMatthew G. Knepley if (qNc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, NcJ); 2334d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 233536a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2336d172c84bSMatthew G. Knepley /* 2337d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 2338d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 2339d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 2340d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 2341d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 2342d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 2343d172c84bSMatthew G. Knepley */ 23449c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p*qNc+c]; 234536a6d9c0SMatthew G. Knepley } 2346d69c5d34SMatthew G. Knepley } 2347d69c5d34SMatthew G. Knepley } 23480f2d7e86SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 2349ffe73a53SMatthew G. Knepley } 235097c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 235197c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 235297c42addSMatthew G. Knepley 235397c42addSMatthew G. Knepley /* Evaluate constant function at points */ 235497c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &NcJ);CHKERRQ(ierr); 235597c42addSMatthew G. Knepley cpdim = 1; 235697c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 235797c42addSMatthew G. Knepley if (fieldI == fieldJ) { 235897c42addSMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 235997c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 236097c42addSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 23619c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights);CHKERRQ(ierr); 23629c3cf19fSMatthew G. Knepley if (qNc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, NcJ); 236397c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 236497c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2365458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += 1.0*qweights[p*qNc+c]; 236697c42addSMatthew G. Knepley } 236797c42addSMatthew G. Knepley } 236897c42addSMatthew G. Knepley } 236997c42addSMatthew G. Knepley } 237097c42addSMatthew G. Knepley } 2371d172c84bSMatthew G. Knepley offsetJ += cpdim; 2372d69c5d34SMatthew G. Knepley } 2373d172c84bSMatthew G. Knepley offsetI += fpdim; 2374549a8adaSMatthew G. Knepley ierr = PetscFree(points);CHKERRQ(ierr); 2375d69c5d34SMatthew G. Knepley } 23760f2d7e86SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);} 23777f5b169aSMatthew G. Knepley /* Preallocate matrix */ 23787f5b169aSMatthew G. Knepley { 2379c094ef40SMatthew G. Knepley Mat preallocator; 2380c094ef40SMatthew G. Knepley PetscScalar *vals; 2381c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 2382c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 23837f5b169aSMatthew G. Knepley 2384c094ef40SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, &locCols);CHKERRQ(ierr); 2385c094ef40SMatthew G. Knepley ierr = MatCreate(PetscObjectComm((PetscObject) In), &preallocator);CHKERRQ(ierr); 2386c094ef40SMatthew G. Knepley ierr = MatSetType(preallocator, MATPREALLOCATOR);CHKERRQ(ierr); 2387c094ef40SMatthew G. Knepley ierr = MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 2388c094ef40SMatthew G. Knepley ierr = MatSetUp(preallocator);CHKERRQ(ierr); 2389c094ef40SMatthew G. Knepley ierr = PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr); 23907f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 23917f5b169aSMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr); 2392c094ef40SMatthew G. Knepley ierr = MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES);CHKERRQ(ierr); 23937f5b169aSMatthew G. Knepley } 2394c094ef40SMatthew G. Knepley ierr = PetscFree3(vals,cellCIndices,cellFIndices);CHKERRQ(ierr); 2395c094ef40SMatthew G. Knepley ierr = MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2396c094ef40SMatthew G. Knepley ierr = MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2397c094ef40SMatthew G. Knepley ierr = MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In);CHKERRQ(ierr); 2398c094ef40SMatthew G. Knepley ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 23997f5b169aSMatthew G. Knepley } 24007f5b169aSMatthew G. Knepley /* Fill matrix */ 24017f5b169aSMatthew G. Knepley ierr = MatZeroEntries(In);CHKERRQ(ierr); 2402d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2403934789fcSMatthew G. Knepley ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr); 2404d69c5d34SMatthew G. Knepley } 2405549a8adaSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 240697c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 2407549a8adaSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 2408934789fcSMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2409934789fcSMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2410d69c5d34SMatthew G. Knepley if (mesh->printFEM) { 2411825f8a23SLisandro Dalcin ierr = PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name);CHKERRQ(ierr); 2412934789fcSMatthew G. Knepley ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr); 2413825f8a23SLisandro Dalcin ierr = MatView(In, NULL);CHKERRQ(ierr); 2414d69c5d34SMatthew G. Knepley } 2415d69c5d34SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 2416d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 2417d69c5d34SMatthew G. Knepley } 24186c73c22cSMatthew G. Knepley 2419bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 2420bd041c0cSMatthew G. Knepley { 2421bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dmc), PETSC_ERR_SUP, "Laziness"); 2422bd041c0cSMatthew G. Knepley } 2423bd041c0cSMatthew G. Knepley 242468132eb9SMatthew G. Knepley /*@ 242568132eb9SMatthew G. Knepley DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM. 242668132eb9SMatthew G. Knepley 242768132eb9SMatthew G. Knepley Input Parameters: 242868132eb9SMatthew G. Knepley + dmf - The fine mesh 242968132eb9SMatthew G. Knepley . dmc - The coarse mesh 243068132eb9SMatthew G. Knepley - user - The user context 243168132eb9SMatthew G. Knepley 243268132eb9SMatthew G. Knepley Output Parameter: 243368132eb9SMatthew G. Knepley . In - The interpolation matrix 243468132eb9SMatthew G. Knepley 243568132eb9SMatthew G. Knepley Level: developer 243668132eb9SMatthew G. Knepley 243768132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 243868132eb9SMatthew G. Knepley @*/ 243968132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 24404ef9d792SMatthew G. Knepley { 244164e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 244264e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 24434ef9d792SMatthew G. Knepley PetscDS prob; 24444ef9d792SMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2445e8f14785SLisandro Dalcin PetscHSetIJ ht; 24464ef9d792SMatthew G. Knepley PetscLayout rLayout; 24474ef9d792SMatthew G. Knepley PetscInt *dnz, *onz; 24484ef9d792SMatthew G. Knepley PetscInt locRows, rStart, rEnd; 24494ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 24504ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 24514ef9d792SMatthew G. Knepley PetscScalar *elemMat; 24524ef9d792SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 24534ef9d792SMatthew G. Knepley PetscErrorCode ierr; 24544ef9d792SMatthew G. Knepley 24554ef9d792SMatthew G. Knepley PetscFunctionBegin; 245677711781SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 24574ef9d792SMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 24584ef9d792SMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 24594bee2e38SMatthew G. Knepley ierr = PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL);CHKERRQ(ierr); 24604ef9d792SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 24614ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 24624ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 2463e87a4003SBarry Smith ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr); 2464e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 2465e87a4003SBarry Smith ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr); 2466e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 24674ef9d792SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 24684ef9d792SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 24699c3cf19fSMatthew G. Knepley ierr = PetscMalloc1(totDim, &elemMat);CHKERRQ(ierr); 24704ef9d792SMatthew G. Knepley 24714ef9d792SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr); 24724ef9d792SMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr); 24734ef9d792SMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 24744ef9d792SMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 24754ef9d792SMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 24764ef9d792SMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 24774ef9d792SMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 24784ef9d792SMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 2479e8f14785SLisandro Dalcin ierr = PetscHSetIJCreate(&ht);CHKERRQ(ierr); 24804ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 24814ef9d792SMatthew G. Knepley PetscObject obj; 24824ef9d792SMatthew G. Knepley PetscClassId id; 2483c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 24844ef9d792SMatthew G. Knepley PetscQuadrature f; 248517f047d8SMatthew G. Knepley const PetscReal *qpoints; 248617f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 24874ef9d792SMatthew G. Knepley 24884ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 24894ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 24904ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 24914ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 24924ef9d792SMatthew G. Knepley 24934ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 24944ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 24954ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 24964ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 24974ef9d792SMatthew G. Knepley 24984ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 24994ef9d792SMatthew G. Knepley Nc = 1; 25004ef9d792SMatthew G. Knepley } 25014ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 25024ef9d792SMatthew G. Knepley /* For each fine grid cell */ 25034ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 25044ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 25054ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 25064ef9d792SMatthew G. Knepley 25076ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 25084ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 25099c3cf19fSMatthew G. Knepley if (numFIndices != fpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim); 25104ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 25114ef9d792SMatthew G. Knepley Vec pointVec; 25124ef9d792SMatthew G. Knepley PetscScalar *pV; 25133a93e3b7SToby Isaac PetscSF coarseCellSF = NULL; 25143a93e3b7SToby Isaac const PetscSFNode *coarseCells; 25159c3cf19fSMatthew G. Knepley PetscInt numCoarseCells, q, c; 25164ef9d792SMatthew G. Knepley 25174ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 25184ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 25199c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 25204ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 25214ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 25224ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 25234ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2524c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2525c330f8ffSToby Isaac 25264ef9d792SMatthew G. Knepley /* Transform point to real space */ 2527c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 25284ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 25294ef9d792SMatthew G. Knepley } 25304ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 25314ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 25321555c271SMatthew G. Knepley /* OPT: Pack all quad points from fine cell */ 253362a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 25343a93e3b7SToby Isaac ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 25354ef9d792SMatthew G. Knepley /* Update preallocation info */ 25363a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 25373a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 25389c3cf19fSMatthew G. Knepley { 2539e8f14785SLisandro Dalcin PetscHashIJKey key; 2540e8f14785SLisandro Dalcin PetscBool missing; 25414ef9d792SMatthew G. Knepley 2542e8f14785SLisandro Dalcin key.i = findices[i]; 2543e8f14785SLisandro Dalcin if (key.i >= 0) { 25444ef9d792SMatthew G. Knepley /* Get indices for coarse elements */ 25454ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 25463a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 25474ef9d792SMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 2548e8f14785SLisandro Dalcin key.j = cindices[c]; 2549e8f14785SLisandro Dalcin if (key.j < 0) continue; 2550e8f14785SLisandro Dalcin ierr = PetscHSetIJQueryAdd(ht, key, &missing);CHKERRQ(ierr); 25514ef9d792SMatthew G. Knepley if (missing) { 2552e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i-rStart]; 2553e8f14785SLisandro Dalcin else ++onz[key.i-rStart]; 25544ef9d792SMatthew G. Knepley } 25554ef9d792SMatthew G. Knepley } 25563a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 25574ef9d792SMatthew G. Knepley } 25584ef9d792SMatthew G. Knepley } 25598c543595SMatthew G. Knepley } 25603a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 25614ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 25624ef9d792SMatthew G. Knepley } 256346bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 25644ef9d792SMatthew G. Knepley } 25654ef9d792SMatthew G. Knepley } 2566e8f14785SLisandro Dalcin ierr = PetscHSetIJDestroy(&ht);CHKERRQ(ierr); 25674ef9d792SMatthew G. Knepley ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 25684ef9d792SMatthew G. Knepley ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 25694ef9d792SMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 25704ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 25714ef9d792SMatthew G. Knepley PetscObject obj; 25724ef9d792SMatthew G. Knepley PetscClassId id; 2573c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 25744ef9d792SMatthew G. Knepley PetscQuadrature f; 25754ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 25769c3cf19fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, i, d; 25774ef9d792SMatthew G. Knepley 25784ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 25794ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 25804ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 25814ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 25824ef9d792SMatthew G. Knepley 25834ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 25844ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 25854ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 25864ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 25874ef9d792SMatthew G. Knepley 25884ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 25894ef9d792SMatthew G. Knepley Nc = 1; 259025ce1634SJed Brown } else SETERRQ1(PetscObjectComm((PetscObject)dmc),PETSC_ERR_ARG_WRONG,"Unknown discretization type for field %d",field); 25914ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 25924ef9d792SMatthew G. Knepley /* For each fine grid cell */ 25934ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 25944ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 25954ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 25964ef9d792SMatthew G. Knepley 25976ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 25984ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 25999c3cf19fSMatthew G. Knepley if (numFIndices != fpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim); 26004ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 26014ef9d792SMatthew G. Knepley Vec pointVec; 26024ef9d792SMatthew G. Knepley PetscScalar *pV; 260312111d7cSToby Isaac PetscSF coarseCellSF = NULL; 26043a93e3b7SToby Isaac const PetscSFNode *coarseCells; 260517f047d8SMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 26064ef9d792SMatthew G. Knepley 26074ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 26084ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 26099c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights);CHKERRQ(ierr); 26109c3cf19fSMatthew G. Knepley if (qNc != Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, Nc); 26114ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 26124ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 26134ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 26144ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2615c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2616c330f8ffSToby Isaac 26174ef9d792SMatthew G. Knepley /* Transform point to real space */ 2618c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 26194ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 26204ef9d792SMatthew G. Knepley } 26214ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 26224ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 26231555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 262462a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 26254ef9d792SMatthew G. Knepley /* Update preallocation info */ 26263a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 26273a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 26284ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 26294ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2630826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 2631c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2632826eb36dSMatthew G. Knepley 26333a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 26344ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 26353a93e3b7SToby Isaac ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 2636e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 2637c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 26384ef9d792SMatthew G. Knepley 26394ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 26404ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 26414ef9d792SMatthew G. Knepley PetscReal *B; 26424ef9d792SMatthew G. Knepley 26434ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 26444ef9d792SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 26454ef9d792SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr); 26469c3cf19fSMatthew G. Knepley ierr = PetscMemzero(elemMat, cpdim * sizeof(PetscScalar));CHKERRQ(ierr); 26474ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 26484ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 26499c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += B[j*Nc + c]*qweights[ccell*qNc + c]; 26504ef9d792SMatthew G. Knepley } 26514ef9d792SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 26524ef9d792SMatthew G. Knepley } else { 26534ef9d792SMatthew G. Knepley cpdim = 1; 26544ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 26559c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*qweights[ccell*qNc + c]; 26564ef9d792SMatthew G. Knepley } 26574ef9d792SMatthew G. Knepley } 26584ef9d792SMatthew G. Knepley /* Update interpolator */ 26599c3cf19fSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);} 26609c3cf19fSMatthew G. Knepley if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim); 26619c3cf19fSMatthew G. Knepley ierr = MatSetValues(In, 1, &findices[i], numCIndices, cindices, elemMat, INSERT_VALUES);CHKERRQ(ierr); 26623a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 26634ef9d792SMatthew G. Knepley } 26644ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 26653a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 26664ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 26674ef9d792SMatthew G. Knepley } 266846bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 26694ef9d792SMatthew G. Knepley } 26704ef9d792SMatthew G. Knepley } 26714ef9d792SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 26724ef9d792SMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 26734ef9d792SMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 26744ef9d792SMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26754ef9d792SMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 267677711781SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 26774ef9d792SMatthew G. Knepley PetscFunctionReturn(0); 26784ef9d792SMatthew G. Knepley } 26794ef9d792SMatthew G. Knepley 268046fa42a0SMatthew G. Knepley /*@ 2681bd041c0cSMatthew G. Knepley DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse DM to a non-nested fine DM. 2682bd041c0cSMatthew G. Knepley 2683bd041c0cSMatthew G. Knepley Input Parameters: 2684bd041c0cSMatthew G. Knepley + dmf - The fine mesh 2685bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 2686bd041c0cSMatthew G. Knepley - user - The user context 2687bd041c0cSMatthew G. Knepley 2688bd041c0cSMatthew G. Knepley Output Parameter: 2689bd041c0cSMatthew G. Knepley . mass - The mass matrix 2690bd041c0cSMatthew G. Knepley 2691bd041c0cSMatthew G. Knepley Level: developer 2692bd041c0cSMatthew G. Knepley 2693bd041c0cSMatthew G. Knepley .seealso: DMPlexComputeMassMatrixNested(), DMPlexComputeInterpolatorNested(), DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 2694bd041c0cSMatthew G. Knepley @*/ 2695bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 2696bd041c0cSMatthew G. Knepley { 2697bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 2698bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 2699bd041c0cSMatthew G. Knepley PetscDS prob; 2700bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2701e8f14785SLisandro Dalcin PetscHSetIJ ht; 2702bd041c0cSMatthew G. Knepley PetscLayout rLayout; 2703bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 2704bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 2705bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 2706bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 2707bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 2708bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 2709bd041c0cSMatthew G. Knepley PetscErrorCode ierr; 2710bd041c0cSMatthew G. Knepley 2711bd041c0cSMatthew G. Knepley PetscFunctionBegin; 2712bd041c0cSMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 2713bd041c0cSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 27144bee2e38SMatthew G. Knepley ierr = PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL);CHKERRQ(ierr); 2715bd041c0cSMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 2716bd041c0cSMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 2717bd041c0cSMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 2718e87a4003SBarry Smith ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr); 2719e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 2720e87a4003SBarry Smith ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr); 2721e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 2722bd041c0cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 2723bd041c0cSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 2724bd041c0cSMatthew G. Knepley ierr = PetscMalloc1(totDim, &elemMat);CHKERRQ(ierr); 2725bd041c0cSMatthew G. Knepley 2726bd041c0cSMatthew G. Knepley ierr = MatGetLocalSize(mass, &locRows, NULL);CHKERRQ(ierr); 2727bd041c0cSMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) mass), &rLayout);CHKERRQ(ierr); 2728bd041c0cSMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 2729bd041c0cSMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 2730bd041c0cSMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 2731bd041c0cSMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 2732bd041c0cSMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 2733bd041c0cSMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 2734e8f14785SLisandro Dalcin ierr = PetscHSetIJCreate(&ht);CHKERRQ(ierr); 2735bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2736bd041c0cSMatthew G. Knepley PetscObject obj; 2737bd041c0cSMatthew G. Knepley PetscClassId id; 2738bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2739bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 2740bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2741bd041c0cSMatthew G. Knepley 2742bd041c0cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 2743bd041c0cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 2744bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetQuadrature((PetscFE) obj, &quad);CHKERRQ(ierr);} 2745bd041c0cSMatthew G. Knepley else {ierr = PetscFVGetQuadrature((PetscFV) obj, &quad);CHKERRQ(ierr);} 2746bd041c0cSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL);CHKERRQ(ierr); 2747bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2748bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2749bd041c0cSMatthew G. Knepley Vec pointVec; 2750bd041c0cSMatthew G. Knepley PetscScalar *pV; 2751bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2752bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2753bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 2754bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 2755bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 2756bd041c0cSMatthew G. Knepley 2757bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2758bd041c0cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 2759bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 2760bd041c0cSMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec);CHKERRQ(ierr); 2761bd041c0cSMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 2762bd041c0cSMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 2763bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 2764c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2765c330f8ffSToby Isaac 2766bd041c0cSMatthew G. Knepley /* Transform point to real space */ 2767c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 2768bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 2769bd041c0cSMatthew G. Knepley } 2770bd041c0cSMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 2771bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 2772bd041c0cSMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 2773bd041c0cSMatthew G. Knepley ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 2774bd041c0cSMatthew G. Knepley /* Update preallocation info */ 2775bd041c0cSMatthew G. Knepley ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 2776bd041c0cSMatthew G. Knepley if (numCoarseCells != Nq) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 2777bd041c0cSMatthew G. Knepley { 2778e8f14785SLisandro Dalcin PetscHashIJKey key; 2779e8f14785SLisandro Dalcin PetscBool missing; 2780bd041c0cSMatthew G. Knepley 2781bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2782e8f14785SLisandro Dalcin key.i = findices[i]; 2783e8f14785SLisandro Dalcin if (key.i >= 0) { 2784bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 2785bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2786bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2787bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 2788e8f14785SLisandro Dalcin key.j = cindices[c]; 2789e8f14785SLisandro Dalcin if (key.j < 0) continue; 2790e8f14785SLisandro Dalcin ierr = PetscHSetIJQueryAdd(ht, key, &missing);CHKERRQ(ierr); 2791bd041c0cSMatthew G. Knepley if (missing) { 2792e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i-rStart]; 2793e8f14785SLisandro Dalcin else ++onz[key.i-rStart]; 2794bd041c0cSMatthew G. Knepley } 2795bd041c0cSMatthew G. Knepley } 2796bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2797bd041c0cSMatthew G. Knepley } 2798bd041c0cSMatthew G. Knepley } 2799bd041c0cSMatthew G. Knepley } 2800bd041c0cSMatthew G. Knepley } 2801bd041c0cSMatthew G. Knepley ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 2802bd041c0cSMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 2803bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2804bd041c0cSMatthew G. Knepley } 2805bd041c0cSMatthew G. Knepley } 2806e8f14785SLisandro Dalcin ierr = PetscHSetIJDestroy(&ht);CHKERRQ(ierr); 2807bd041c0cSMatthew G. Knepley ierr = MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 2808bd041c0cSMatthew G. Knepley ierr = MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2809bd041c0cSMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 2810bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2811bd041c0cSMatthew G. Knepley PetscObject obj; 2812bd041c0cSMatthew G. Knepley PetscClassId id; 2813bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2814bd041c0cSMatthew G. Knepley PetscReal *Bfine; 2815bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 2816bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2817bd041c0cSMatthew G. Knepley 2818bd041c0cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 2819bd041c0cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 2820bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetQuadrature((PetscFE) obj, &quad);CHKERRQ(ierr);ierr = PetscFEGetDefaultTabulation((PetscFE) obj, &Bfine, NULL, NULL);CHKERRQ(ierr);} 2821bd041c0cSMatthew G. Knepley else {ierr = PetscFVGetQuadrature((PetscFV) obj, &quad);CHKERRQ(ierr);} 2822bd041c0cSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights);CHKERRQ(ierr); 2823bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2824bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2825bd041c0cSMatthew G. Knepley Vec pointVec; 2826bd041c0cSMatthew G. Knepley PetscScalar *pV; 2827bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2828bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2829bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 2830bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 2831bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 2832bd041c0cSMatthew G. Knepley 2833bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2834bd041c0cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 2835bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 2836bd041c0cSMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec);CHKERRQ(ierr); 2837bd041c0cSMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 2838bd041c0cSMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 2839bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 2840c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2841c330f8ffSToby Isaac 2842bd041c0cSMatthew G. Knepley /* Transform point to real space */ 2843c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 2844bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 2845bd041c0cSMatthew G. Knepley } 2846bd041c0cSMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 2847bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 2848bd041c0cSMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 2849bd041c0cSMatthew G. Knepley /* Update matrix */ 2850bd041c0cSMatthew G. Knepley ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 2851bd041c0cSMatthew G. Knepley if (numCoarseCells != Nq) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 2852bd041c0cSMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 2853bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2854bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 2855c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2856c330f8ffSToby Isaac 2857bd041c0cSMatthew G. Knepley 2858bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2859bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 2860bd041c0cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 2861bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 2862c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 2863bd041c0cSMatthew G. Knepley 2864bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2865bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 2866bd041c0cSMatthew G. Knepley PetscReal *B; 2867bd041c0cSMatthew G. Knepley 2868bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 2869bd041c0cSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 2870bd041c0cSMatthew G. Knepley ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr); 2871bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 2872bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2873bd041c0cSMatthew G. Knepley ierr = PetscMemzero(elemMat, cpdim * sizeof(PetscScalar));CHKERRQ(ierr); 2874bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2875bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += B[j*Nc + c]*Bfine[(ccell*numFIndices + i)*Nc + c]*qweights[ccell*Nc + c]*detJ; 2876bd041c0cSMatthew G. Knepley } 2877bd041c0cSMatthew G. Knepley /* Update interpolator */ 2878bd041c0cSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);} 2879bd041c0cSMatthew G. Knepley if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim); 2880bd041c0cSMatthew G. Knepley ierr = MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES);CHKERRQ(ierr); 2881bd041c0cSMatthew G. Knepley } 2882bd041c0cSMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 2883bd041c0cSMatthew G. Knepley } else { 2884bd041c0cSMatthew G. Knepley cpdim = 1; 2885bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2886bd041c0cSMatthew G. Knepley ierr = PetscMemzero(elemMat, cpdim * sizeof(PetscScalar));CHKERRQ(ierr); 2887bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2888bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*1.0*qweights[ccell*Nc + c]*detJ; 2889bd041c0cSMatthew G. Knepley } 2890bd041c0cSMatthew G. Knepley /* Update interpolator */ 2891bd041c0cSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);} 2892bd041c0cSMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_SELF, "Nq: %d %d Nf: %d %d Nc: %d %d\n", ccell, Nq, i, numFIndices, j, numCIndices);CHKERRQ(ierr); 2893bd041c0cSMatthew G. Knepley if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim); 2894bd041c0cSMatthew G. Knepley ierr = MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES);CHKERRQ(ierr); 2895bd041c0cSMatthew G. Knepley } 2896bd041c0cSMatthew G. Knepley } 2897bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2898bd041c0cSMatthew G. Knepley } 2899bd041c0cSMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 2900bd041c0cSMatthew G. Knepley ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 2901bd041c0cSMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 2902bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2903bd041c0cSMatthew G. Knepley } 2904bd041c0cSMatthew G. Knepley } 2905bd041c0cSMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 2906bd041c0cSMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 2907bd041c0cSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 2908bd041c0cSMatthew G. Knepley ierr = MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2909bd041c0cSMatthew G. Knepley ierr = MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2910bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 2911bd041c0cSMatthew G. Knepley } 2912bd041c0cSMatthew G. Knepley 2913bd041c0cSMatthew G. Knepley /*@ 291446fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 291546fa42a0SMatthew G. Knepley 291646fa42a0SMatthew G. Knepley Input Parameters: 291746fa42a0SMatthew G. Knepley + dmc - The coarse mesh 291846fa42a0SMatthew G. Knepley - dmf - The fine mesh 291946fa42a0SMatthew G. Knepley - user - The user context 292046fa42a0SMatthew G. Knepley 292146fa42a0SMatthew G. Knepley Output Parameter: 292246fa42a0SMatthew G. Knepley . sc - The mapping 292346fa42a0SMatthew G. Knepley 292446fa42a0SMatthew G. Knepley Level: developer 292546fa42a0SMatthew G. Knepley 292646fa42a0SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 292746fa42a0SMatthew G. Knepley @*/ 29287c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 29297c927364SMatthew G. Knepley { 2930e9d4ef1bSMatthew G. Knepley PetscDS prob; 29317c927364SMatthew G. Knepley PetscFE *feRef; 293297c42addSMatthew G. Knepley PetscFV *fvRef; 29337c927364SMatthew G. Knepley Vec fv, cv; 29347c927364SMatthew G. Knepley IS fis, cis; 29357c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 29367c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 29370bd915a7SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, cEndInterior, c, dim, d, startC, endC, offsetC, offsetF, m; 29386f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 29397c927364SMatthew G. Knepley PetscErrorCode ierr; 29407c927364SMatthew G. Knepley 29417c927364SMatthew G. Knepley PetscFunctionBegin; 294275a69067SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 2943c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 2944e87a4003SBarry Smith ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr); 2945e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 2946e87a4003SBarry Smith ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr); 2947e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 29487c927364SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 29497c927364SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 29509ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 29519ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 2952e9d4ef1bSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 29536f3d3cbcSMatthew G. Knepley ierr = PetscCalloc3(Nf,&feRef,Nf,&fvRef,Nf,&needAvg);CHKERRQ(ierr); 29547c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 295597c42addSMatthew G. Knepley PetscObject obj; 295697c42addSMatthew G. Knepley PetscClassId id; 2957aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 29587c927364SMatthew G. Knepley 295997c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 296097c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 296197c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 296297c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 29636f3d3cbcSMatthew G. Knepley PetscSpace sp; 29649b2fc754SMatthew G. Knepley PetscInt maxDegree; 296597c42addSMatthew G. Knepley 29667c927364SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 29677c927364SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr); 29687c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 29696f3d3cbcSMatthew G. Knepley ierr = PetscFEGetBasisSpace(fe, &sp);CHKERRQ(ierr); 29709b2fc754SMatthew G. Knepley ierr = PetscSpaceGetDegree(sp, NULL, &maxDegree);CHKERRQ(ierr); 29719b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 297297c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 297397c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 297497c42addSMatthew G. Knepley PetscDualSpace Q; 297597c42addSMatthew G. Knepley 297697c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 297797c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 297897c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fNb);CHKERRQ(ierr); 297997c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 29806f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 298197c42addSMatthew G. Knepley } 2982d172c84bSMatthew G. Knepley fTotDim += fNb; 29837c927364SMatthew G. Knepley } 2984e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 29857c927364SMatthew G. Knepley ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr); 29867c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 29877c927364SMatthew G. Knepley PetscFE feC; 298897c42addSMatthew G. Knepley PetscFV fvC; 29897c927364SMatthew G. Knepley PetscDualSpace QF, QC; 2990d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 29917c927364SMatthew G. Knepley 299297c42addSMatthew G. Knepley if (feRef[field]) { 2993e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr); 29947c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr); 29957c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr); 29967c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr); 2997d172c84bSMatthew G. Knepley ierr = PetscDualSpaceGetOrder(QF, &order);CHKERRQ(ierr); 29987c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 29997c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr); 30007c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 300197c42addSMatthew G. Knepley } else { 300297c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC);CHKERRQ(ierr); 300397c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvC, &NcC);CHKERRQ(ierr); 300497c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[field], &NcF);CHKERRQ(ierr); 300597c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[field], &QF);CHKERRQ(ierr); 300697c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 300797c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvC, &QC);CHKERRQ(ierr); 300897c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 300997c42addSMatthew G. Knepley } 301097c42addSMatthew G. Knepley if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC); 30117c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 30127c927364SMatthew G. Knepley PetscQuadrature cfunc; 3013d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 3014d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 301597c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 30167c927364SMatthew G. Knepley 30177c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr); 3018d172c84bSMatthew G. Knepley ierr = PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights);CHKERRQ(ierr); 3019d172c84bSMatthew G. Knepley if (NqcC != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %D must match number of field components", NqcC, NcC); 302097c42addSMatthew G. Knepley if (NpC != 1 && feRef[field]) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 30217c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 30227c927364SMatthew G. Knepley PetscQuadrature ffunc; 3023d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 30247c927364SMatthew G. Knepley PetscReal sum = 0.0; 3025d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 30267c927364SMatthew G. Knepley 30277c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr); 3028d172c84bSMatthew G. Knepley ierr = PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights);CHKERRQ(ierr); 3029d172c84bSMatthew G. Knepley if (NqcF != NcF) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %D must match number of field components", NqcF, NcF); 30307c927364SMatthew G. Knepley if (NpC != NpF) continue; 30317c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 30327c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 3033d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d]*fqweights[d]); 3034d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 3035d172c84bSMatthew G. Knepley cmap[offsetC+c] = offsetF+f; 303697c42addSMatthew G. Knepley found = PETSC_TRUE; 30377c927364SMatthew G. Knepley break; 30387c927364SMatthew G. Knepley } 303997c42addSMatthew G. Knepley if (!found) { 304097c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 3041d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 3042d172c84bSMatthew G. Knepley cmap[offsetC+c] = offsetF+0; 304397c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 304497c42addSMatthew G. Knepley } 30457c927364SMatthew G. Knepley } 3046d172c84bSMatthew G. Knepley offsetC += cpdim; 3047d172c84bSMatthew G. Knepley offsetF += fpdim; 30487c927364SMatthew G. Knepley } 304997c42addSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);ierr = PetscFVDestroy(&fvRef[f]);CHKERRQ(ierr);} 30506f3d3cbcSMatthew G. Knepley ierr = PetscFree3(feRef,fvRef,needAvg);CHKERRQ(ierr); 30517c927364SMatthew G. Knepley 30527c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr); 30537c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr); 30540bd915a7SMatthew G. Knepley ierr = VecGetOwnershipRange(cv, &startC, &endC);CHKERRQ(ierr); 30557c927364SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr); 30567c927364SMatthew G. Knepley ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr); 3057aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr); 3058aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr); 30597c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 30607c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 30617c927364SMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr); 30627c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 30630bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 30647c927364SMatthew G. Knepley if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 30657c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 30667c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 30677c927364SMatthew G. Knepley } 30687c927364SMatthew G. Knepley } 30697c927364SMatthew G. Knepley ierr = PetscFree(cmap);CHKERRQ(ierr); 30707c927364SMatthew G. Knepley ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr); 30717c927364SMatthew G. Knepley 30727c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr); 30737c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr); 30749448b7f1SJunchao Zhang ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr); 30757c927364SMatthew G. Knepley ierr = ISDestroy(&cis);CHKERRQ(ierr); 30767c927364SMatthew G. Knepley ierr = ISDestroy(&fis);CHKERRQ(ierr); 30777c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr); 30787c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr); 307975a69067SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 3080cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 3081cb1e1211SMatthew G Knepley } 3082a1cf66bbSMatthew G. Knepley 30832f856554SMatthew G. Knepley /*@C 30842f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 30852f856554SMatthew G. Knepley 30862f856554SMatthew G. Knepley Input Parameters: 30872f856554SMatthew G. Knepley + dm - The DM 30882f856554SMatthew G. Knepley . cellIS - The cells to include 30892f856554SMatthew G. Knepley . locX - A local vector with the solution fields 30902f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 30912f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 30922f856554SMatthew G. Knepley 30932f856554SMatthew G. Knepley Output Parameters: 30942f856554SMatthew G. Knepley + u - The field coefficients 30952f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 30962f856554SMatthew G. Knepley - a - The auxiliary field coefficients 30972f856554SMatthew G. Knepley 30982f856554SMatthew G. Knepley Level: developer 30992f856554SMatthew G. Knepley 31002f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 31012f856554SMatthew G. Knepley @*/ 31022f856554SMatthew G. Knepley PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 31032f856554SMatthew G. Knepley { 31042f856554SMatthew G. Knepley DM plex, plexA = NULL; 31052f856554SMatthew G. Knepley PetscSection section, sectionAux; 31062f856554SMatthew G. Knepley PetscDS prob; 31072f856554SMatthew G. Knepley const PetscInt *cells; 31082f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 31092f856554SMatthew G. Knepley PetscErrorCode ierr; 31102f856554SMatthew G. Knepley 31112f856554SMatthew G. Knepley PetscFunctionBegin; 31122f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31132f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 31142f856554SMatthew G. Knepley if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);} 31152f856554SMatthew G. Knepley if (locA) {PetscValidHeaderSpecific(locA, VEC_CLASSID, 6);} 31162f856554SMatthew G. Knepley PetscValidPointer(u, 7); 31172f856554SMatthew G. Knepley PetscValidPointer(u_t, 8); 31182f856554SMatthew G. Knepley PetscValidPointer(a, 9); 31192f856554SMatthew G. Knepley ierr = DMPlexConvertPlex(dm, &plex, PETSC_FALSE);CHKERRQ(ierr); 31202f856554SMatthew G. Knepley ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 31212f856554SMatthew G. Knepley ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 31222f856554SMatthew G. Knepley ierr = DMGetCellDS(dm, cStart, &prob);CHKERRQ(ierr); 31232f856554SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 31242f856554SMatthew G. Knepley if (locA) { 31252f856554SMatthew G. Knepley DM dmAux; 31262f856554SMatthew G. Knepley PetscDS probAux; 31272f856554SMatthew G. Knepley 31282f856554SMatthew G. Knepley ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr); 31292f856554SMatthew G. Knepley ierr = DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE);CHKERRQ(ierr); 31302f856554SMatthew G. Knepley ierr = DMGetSection(dmAux, §ionAux);CHKERRQ(ierr); 31312f856554SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 31322f856554SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 31332f856554SMatthew G. Knepley } 31342f856554SMatthew G. Knepley numCells = cEnd - cStart; 31352f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u);CHKERRQ(ierr); 31362f856554SMatthew G. Knepley if (locX_t) {ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u_t);CHKERRQ(ierr);} else {*u_t = NULL;} 31372f856554SMatthew G. Knepley if (locA) {ierr = DMGetWorkArray(dm, numCells*totDimAux, MPIU_SCALAR, a);CHKERRQ(ierr);} else {*a = NULL;} 31382f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 31392f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 31402f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 31412f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 31422f856554SMatthew G. Knepley PetscInt i; 31432f856554SMatthew G. Knepley 31442f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x);CHKERRQ(ierr); 31452f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind*totDim+i] = x[i]; 31462f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x);CHKERRQ(ierr); 31472f856554SMatthew G. Knepley if (locX_t) { 31482f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t);CHKERRQ(ierr); 31492f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind*totDim+i] = x_t[i]; 31502f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t);CHKERRQ(ierr); 31512f856554SMatthew G. Knepley } 31522f856554SMatthew G. Knepley if (locA) { 31532f856554SMatthew G. Knepley PetscInt subcell; 31542f856554SMatthew G. Knepley ierr = DMPlexGetAuxiliaryPoint(plex, plexA, cell, &subcell);CHKERRQ(ierr); 31552f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x);CHKERRQ(ierr); 31562f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind*totDimAux+i] = x[i]; 31572f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x);CHKERRQ(ierr); 31582f856554SMatthew G. Knepley } 31592f856554SMatthew G. Knepley } 31602f856554SMatthew G. Knepley ierr = DMDestroy(&plex);CHKERRQ(ierr); 31612f856554SMatthew G. Knepley if (locA) {ierr = DMDestroy(&plexA);CHKERRQ(ierr);} 31622f856554SMatthew G. Knepley ierr = ISRestorePointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 31632f856554SMatthew G. Knepley PetscFunctionReturn(0); 31642f856554SMatthew G. Knepley } 31652f856554SMatthew G. Knepley 31662f856554SMatthew G. Knepley /*@C 31672f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 31682f856554SMatthew G. Knepley 31692f856554SMatthew G. Knepley Input Parameters: 31702f856554SMatthew G. Knepley + dm - The DM 31712f856554SMatthew G. Knepley . cellIS - The cells to include 31722f856554SMatthew G. Knepley . locX - A local vector with the solution fields 31732f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 31742f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 31752f856554SMatthew G. Knepley 31762f856554SMatthew G. Knepley Output Parameters: 31772f856554SMatthew G. Knepley + u - The field coefficients 31782f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 31792f856554SMatthew G. Knepley - a - The auxiliary field coefficients 31802f856554SMatthew G. Knepley 31812f856554SMatthew G. Knepley Level: developer 31822f856554SMatthew G. Knepley 31832f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 31842f856554SMatthew G. Knepley @*/ 31852f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 31862f856554SMatthew G. Knepley { 31872f856554SMatthew G. Knepley PetscErrorCode ierr; 31882f856554SMatthew G. Knepley 31892f856554SMatthew G. Knepley PetscFunctionBegin; 31902f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u);CHKERRQ(ierr); 31912f856554SMatthew G. Knepley if (locX_t) {ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t);CHKERRQ(ierr);} 31922f856554SMatthew G. Knepley if (locA) {ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a);CHKERRQ(ierr);} 31932f856554SMatthew G. Knepley PetscFunctionReturn(0); 31942f856554SMatthew G. Knepley } 31952f856554SMatthew G. Knepley 31962f856554SMatthew G. Knepley /*@C 31972f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 31982f856554SMatthew G. Knepley 31992f856554SMatthew G. Knepley Input Parameters: 32002f856554SMatthew G. Knepley + dm - The DM 32012f856554SMatthew G. Knepley . fStart - The first face to include 32022f856554SMatthew G. Knepley . fEnd - The first face to exclude 32032f856554SMatthew G. Knepley . locX - A local vector with the solution fields 32042f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 32052f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 32062f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 32072f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 32082f856554SMatthew G. Knepley 32092f856554SMatthew G. Knepley Output Parameters: 32102f856554SMatthew G. Knepley + Nface - The number of faces with field values 32112f856554SMatthew G. Knepley . uL - The field values at the left side of the face 32122f856554SMatthew G. Knepley - uR - The field values at the right side of the face 32132f856554SMatthew G. Knepley 32142f856554SMatthew G. Knepley Level: developer 32152f856554SMatthew G. Knepley 32162f856554SMatthew G. Knepley .seealso: DMPlexGetCellFields() 32172f856554SMatthew G. Knepley @*/ 32182f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 32192f856554SMatthew G. Knepley { 32202f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 32212f856554SMatthew G. Knepley PetscSection section; 32222f856554SMatthew G. Knepley PetscDS prob; 32232f856554SMatthew G. Knepley DMLabel ghostLabel; 32242f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 32252f856554SMatthew G. Knepley PetscBool *isFE; 32262f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 32272f856554SMatthew G. Knepley PetscErrorCode ierr; 32282f856554SMatthew G. Knepley 32292f856554SMatthew G. Knepley PetscFunctionBegin; 32302f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32312f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 32322f856554SMatthew G. Knepley if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);} 32332f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 32342f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 32352f856554SMatthew G. Knepley if (locGrad) {PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);} 32362f856554SMatthew G. Knepley PetscValidPointer(uL, 9); 32372f856554SMatthew G. Knepley PetscValidPointer(uR, 10); 32382f856554SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 32392f856554SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 32402f856554SMatthew G. Knepley ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 32412f856554SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 32422f856554SMatthew G. Knepley ierr = PetscDSGetTotalComponents(prob, &Nc);CHKERRQ(ierr); 32432f856554SMatthew G. Knepley ierr = PetscMalloc1(Nf, &isFE);CHKERRQ(ierr); 32442f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 32452f856554SMatthew G. Knepley PetscObject obj; 32462f856554SMatthew G. Knepley PetscClassId id; 32472f856554SMatthew G. Knepley 32482f856554SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 32492f856554SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 32502f856554SMatthew G. Knepley if (id == PETSCFE_CLASSID) {isFE[f] = PETSC_TRUE;} 32512f856554SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {isFE[f] = PETSC_FALSE;} 32522f856554SMatthew G. Knepley else {isFE[f] = PETSC_FALSE;} 32532f856554SMatthew G. Knepley } 32542f856554SMatthew G. Knepley ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr); 32552f856554SMatthew G. Knepley ierr = VecGetArrayRead(locX, &x);CHKERRQ(ierr); 32562f856554SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 32572f856554SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 32582f856554SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 32592f856554SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 32602f856554SMatthew G. Knepley if (locGrad) { 32612f856554SMatthew G. Knepley ierr = VecGetDM(locGrad, &dmGrad);CHKERRQ(ierr); 32622f856554SMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 32632f856554SMatthew G. Knepley } 32642f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uL);CHKERRQ(ierr); 32652f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uR);CHKERRQ(ierr); 32662f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 32672f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 32682f856554SMatthew G. Knepley const PetscInt *cells; 32692f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 32702f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 32712f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 32722f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 32732f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 32742f856554SMatthew G. Knepley 32752f856554SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel, face, &ghost);CHKERRQ(ierr); 32762f856554SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, face, &nsupp);CHKERRQ(ierr); 32772f856554SMatthew G. Knepley ierr = DMPlexGetTreeChildren(dm, face, &nchild, NULL);CHKERRQ(ierr); 32782f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 32792f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 32802f856554SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 32812f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL);CHKERRQ(ierr); 32822f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR);CHKERRQ(ierr); 32832f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 32842f856554SMatthew G. Knepley PetscInt off; 32852f856554SMatthew G. Knepley 32862f856554SMatthew G. Knepley ierr = PetscDSGetComponentOffset(prob, f, &off);CHKERRQ(ierr); 32872f856554SMatthew G. Knepley if (isFE[f]) { 32882f856554SMatthew G. Knepley const PetscInt *cone; 32892f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 32902f856554SMatthew G. Knepley 32912f856554SMatthew G. Knepley xL = xR = NULL; 32922f856554SMatthew G. Knepley ierr = PetscSectionGetFieldComponents(section, f, &comp);CHKERRQ(ierr); 32932f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL);CHKERRQ(ierr); 32942f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR);CHKERRQ(ierr); 32952f856554SMatthew G. Knepley ierr = DMPlexGetCone(dm, cells[0], &cone);CHKERRQ(ierr); 32962f856554SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cells[0], &coneSizeL);CHKERRQ(ierr); 32972f856554SMatthew G. Knepley for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) if (cone[faceLocL] == face) break; 32982f856554SMatthew G. Knepley ierr = DMPlexGetCone(dm, cells[1], &cone);CHKERRQ(ierr); 32992f856554SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cells[1], &coneSizeR);CHKERRQ(ierr); 33002f856554SMatthew G. Knepley for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) if (cone[faceLocR] == face) break; 33012f856554SMatthew G. Knepley if (faceLocL == coneSizeL && faceLocR == coneSizeR) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %d in cone of cell %d or cell %d", face, cells[0], cells[1]); 33022f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 33032f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 33042f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 3305a8f1f9e5SMatthew G. Knepley ierr = PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface*Nc+off]);CHKERRQ(ierr); 3306a8f1f9e5SMatthew G. Knepley if (rdof == ldof && faceLocR < coneSizeR) {ierr = PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface*Nc+off]);CHKERRQ(ierr);} 33072f856554SMatthew G. Knepley else {for(d = 0; d < comp; ++d) uRl[iface*Nc+off+d] = uLl[iface*Nc+off+d];} 33082f856554SMatthew G. Knepley } 33092f856554SMatthew G. Knepley else { 3310a8f1f9e5SMatthew G. Knepley ierr = PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface*Nc+off]);CHKERRQ(ierr); 33112f856554SMatthew G. Knepley ierr = PetscSectionGetFieldComponents(section, f, &comp);CHKERRQ(ierr); 33122f856554SMatthew G. Knepley for(d = 0; d < comp; ++d) uLl[iface*Nc+off+d] = uRl[iface*Nc+off+d]; 33132f856554SMatthew G. Knepley } 33142f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL);CHKERRQ(ierr); 33152f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR);CHKERRQ(ierr); 33162f856554SMatthew G. Knepley } else { 33172f856554SMatthew G. Knepley PetscFV fv; 33182f856554SMatthew G. Knepley PetscInt numComp, c; 33192f856554SMatthew G. Knepley 33202f856554SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fv);CHKERRQ(ierr); 33212f856554SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &numComp);CHKERRQ(ierr); 33222f856554SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL);CHKERRQ(ierr); 33232f856554SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR);CHKERRQ(ierr); 33242f856554SMatthew G. Knepley if (dmGrad) { 33252f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 33262f856554SMatthew G. Knepley 33272f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL);CHKERRQ(ierr); 33282f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR);CHKERRQ(ierr); 33292f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 33302f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 33312f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 33322f856554SMatthew G. Knepley uLl[iface*Nc+off+c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c*dim], dxL); 33332f856554SMatthew G. Knepley uRl[iface*Nc+off+c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c*dim], dxR); 33342f856554SMatthew G. Knepley } 33352f856554SMatthew G. Knepley } else { 33362f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 33372f856554SMatthew G. Knepley uLl[iface*Nc+off+c] = xL[c]; 33382f856554SMatthew G. Knepley uRl[iface*Nc+off+c] = xR[c]; 33392f856554SMatthew G. Knepley } 33402f856554SMatthew G. Knepley } 33412f856554SMatthew G. Knepley } 33422f856554SMatthew G. Knepley } 33432f856554SMatthew G. Knepley ++iface; 33442f856554SMatthew G. Knepley } 33452f856554SMatthew G. Knepley *Nface = iface; 33462f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(locX, &x);CHKERRQ(ierr); 33472f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 33482f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 33492f856554SMatthew G. Knepley if (locGrad) { 33502f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 33512f856554SMatthew G. Knepley } 33522f856554SMatthew G. Knepley ierr = PetscFree(isFE);CHKERRQ(ierr); 33532f856554SMatthew G. Knepley PetscFunctionReturn(0); 33542f856554SMatthew G. Knepley } 33552f856554SMatthew G. Knepley 33562f856554SMatthew G. Knepley /*@C 33572f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 33582f856554SMatthew G. Knepley 33592f856554SMatthew G. Knepley Input Parameters: 33602f856554SMatthew G. Knepley + dm - The DM 33612f856554SMatthew G. Knepley . fStart - The first face to include 33622f856554SMatthew G. Knepley . fEnd - The first face to exclude 33632f856554SMatthew G. Knepley . locX - A local vector with the solution fields 33642f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 33652f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 33662f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 33672f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 33682f856554SMatthew G. Knepley 33692f856554SMatthew G. Knepley Output Parameters: 33702f856554SMatthew G. Knepley + Nface - The number of faces with field values 33712f856554SMatthew G. Knepley . uL - The field values at the left side of the face 33722f856554SMatthew G. Knepley - uR - The field values at the right side of the face 33732f856554SMatthew G. Knepley 33742f856554SMatthew G. Knepley Level: developer 33752f856554SMatthew G. Knepley 33762f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 33772f856554SMatthew G. Knepley @*/ 33782f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 33792f856554SMatthew G. Knepley { 33802f856554SMatthew G. Knepley PetscErrorCode ierr; 33812f856554SMatthew G. Knepley 33822f856554SMatthew G. Knepley PetscFunctionBegin; 33832f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL);CHKERRQ(ierr); 33842f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR);CHKERRQ(ierr); 33852f856554SMatthew G. Knepley PetscFunctionReturn(0); 33862f856554SMatthew G. Knepley } 33872f856554SMatthew G. Knepley 33882f856554SMatthew G. Knepley /*@C 33892f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 33902f856554SMatthew G. Knepley 33912f856554SMatthew G. Knepley Input Parameters: 33922f856554SMatthew G. Knepley + dm - The DM 33932f856554SMatthew G. Knepley . fStart - The first face to include 33942f856554SMatthew G. Knepley . fEnd - The first face to exclude 33952f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 33962f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 33972f856554SMatthew G. Knepley 33982f856554SMatthew G. Knepley Output Parameters: 33992f856554SMatthew G. Knepley + Nface - The number of faces with field values 34002f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 34012f856554SMatthew G. Knepley - vol - The cell volume 34022f856554SMatthew G. Knepley 34032f856554SMatthew G. Knepley Level: developer 34042f856554SMatthew G. Knepley 34052f856554SMatthew G. Knepley .seealso: DMPlexGetCellFields() 34062f856554SMatthew G. Knepley @*/ 34072f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 34082f856554SMatthew G. Knepley { 34092f856554SMatthew G. Knepley DM dmFace, dmCell; 34102f856554SMatthew G. Knepley DMLabel ghostLabel; 34112f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 34122f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 34132f856554SMatthew G. Knepley PetscErrorCode ierr; 34142f856554SMatthew G. Knepley 34152f856554SMatthew G. Knepley PetscFunctionBegin; 34162f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 34172f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 34182f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 34192f856554SMatthew G. Knepley PetscValidPointer(fgeom, 6); 34202f856554SMatthew G. Knepley PetscValidPointer(vol, 7); 34212f856554SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 34222f856554SMatthew G. Knepley ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr); 34232f856554SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 34242f856554SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 34252f856554SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 34262f856554SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 34272f856554SMatthew G. Knepley ierr = PetscMalloc1(numFaces, fgeom);CHKERRQ(ierr); 34282f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFaces*2, MPIU_SCALAR, vol);CHKERRQ(ierr); 34292f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 34302f856554SMatthew G. Knepley const PetscInt *cells; 34312f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 34322f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 34332f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 34342f856554SMatthew G. Knepley PetscReal *voll = *vol; 34352f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 34362f856554SMatthew G. Knepley 34372f856554SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel, face, &ghost);CHKERRQ(ierr); 34382f856554SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, face, &nsupp);CHKERRQ(ierr); 34392f856554SMatthew G. Knepley ierr = DMPlexGetTreeChildren(dm, face, &nchild, NULL);CHKERRQ(ierr); 34402f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 34412f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 34422f856554SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 34432f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL);CHKERRQ(ierr); 34442f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR);CHKERRQ(ierr); 34452f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 34462f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 34472f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 34482f856554SMatthew G. Knepley } 34492f856554SMatthew G. Knepley voll[iface*2+0] = cgL->volume; 34502f856554SMatthew G. Knepley voll[iface*2+1] = cgR->volume; 34512f856554SMatthew G. Knepley ++iface; 34522f856554SMatthew G. Knepley } 34532f856554SMatthew G. Knepley *Nface = iface; 34542f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 34552f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 34562f856554SMatthew G. Knepley PetscFunctionReturn(0); 34572f856554SMatthew G. Knepley } 34582f856554SMatthew G. Knepley 34592f856554SMatthew G. Knepley /*@C 34602f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 34612f856554SMatthew G. Knepley 34622f856554SMatthew G. Knepley Input Parameters: 34632f856554SMatthew G. Knepley + dm - The DM 34642f856554SMatthew G. Knepley . fStart - The first face to include 34652f856554SMatthew G. Knepley . fEnd - The first face to exclude 34662f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 34672f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 34682f856554SMatthew G. Knepley 34692f856554SMatthew G. Knepley Output Parameters: 34702f856554SMatthew G. Knepley + Nface - The number of faces with field values 34712f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 34722f856554SMatthew G. Knepley - vol - The cell volume 34732f856554SMatthew G. Knepley 34742f856554SMatthew G. Knepley Level: developer 34752f856554SMatthew G. Knepley 34762f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 34772f856554SMatthew G. Knepley @*/ 34782f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 34792f856554SMatthew G. Knepley { 34802f856554SMatthew G. Knepley PetscErrorCode ierr; 34812f856554SMatthew G. Knepley 34822f856554SMatthew G. Knepley PetscFunctionBegin; 34832f856554SMatthew G. Knepley ierr = PetscFree(*fgeom);CHKERRQ(ierr); 34842f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_REAL, vol);CHKERRQ(ierr); 34852f856554SMatthew G. Knepley PetscFunctionReturn(0); 34862f856554SMatthew G. Knepley } 34872f856554SMatthew G. Knepley 3488a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3489a1cf66bbSMatthew G. Knepley { 3490a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 3491a1cf66bbSMatthew G. Knepley PetscObjectId id; 3492a1cf66bbSMatthew G. Knepley PetscContainer container; 3493a1cf66bbSMatthew G. Knepley PetscErrorCode ierr; 3494a1cf66bbSMatthew G. Knepley 3495a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3496a1cf66bbSMatthew G. Knepley ierr = PetscObjectGetId((PetscObject)quad,&id);CHKERRQ(ierr); 3497a1cf66bbSMatthew G. Knepley ierr = PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%x\n", id);CHKERRQ(ierr); 3498a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container);CHKERRQ(ierr); 3499a1cf66bbSMatthew G. Knepley if (container) { 3500a1cf66bbSMatthew G. Knepley ierr = PetscContainerGetPointer(container, (void **) geom);CHKERRQ(ierr); 3501a1cf66bbSMatthew G. Knepley } else { 3502a1cf66bbSMatthew G. Knepley ierr = DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom);CHKERRQ(ierr); 3503a1cf66bbSMatthew G. Knepley ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr); 3504a1cf66bbSMatthew G. Knepley ierr = PetscContainerSetPointer(container, (void *) *geom);CHKERRQ(ierr); 3505a1cf66bbSMatthew G. Knepley ierr = PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom);CHKERRQ(ierr); 3506a1cf66bbSMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container);CHKERRQ(ierr); 3507a1cf66bbSMatthew G. Knepley ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 3508a1cf66bbSMatthew G. Knepley } 3509a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3510a1cf66bbSMatthew G. Knepley } 3511a1cf66bbSMatthew G. Knepley 3512a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3513a1cf66bbSMatthew G. Knepley { 3514a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3515a1cf66bbSMatthew G. Knepley *geom = NULL; 3516a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3517a1cf66bbSMatthew G. Knepley } 3518a1cf66bbSMatthew G. Knepley 351992d50984SMatthew G. Knepley PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 352092d50984SMatthew G. Knepley { 352192d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 352292d50984SMatthew G. Knepley const char *name = "Residual"; 352392d50984SMatthew G. Knepley DM dmAux = NULL; 352492d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 352592d50984SMatthew G. Knepley PetscDS prob = NULL; 352692d50984SMatthew G. Knepley PetscDS probAux = NULL; 352792d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 352892d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 352992d50984SMatthew G. Knepley DMField coordField = NULL; 3530c0006e53SPatrick Farrell Vec locA; 3531c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 353292d50984SMatthew G. Knepley IS chunkIS; 353392d50984SMatthew G. Knepley const PetscInt *cells; 353492d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 3535364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 353692d50984SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 353792d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 353892d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 353992d50984SMatthew G. Knepley PetscErrorCode ierr; 354092d50984SMatthew G. Knepley 354192d50984SMatthew G. Knepley PetscFunctionBegin; 354292d50984SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_ResidualFEM,dm,0,0,0);CHKERRQ(ierr); 354392d50984SMatthew G. Knepley /* FEM+FVM */ 354492d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 354592d50984SMatthew G. Knepley ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr); 354692d50984SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 354792d50984SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 354892d50984SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 354992d50984SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr); 355092d50984SMatthew G. Knepley if (locA) { 355192d50984SMatthew G. Knepley ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr); 355292d50984SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 355392d50984SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 355492d50984SMatthew G. Knepley } 355592d50984SMatthew G. Knepley /* 2: Get geometric data */ 355692d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 355792d50984SMatthew G. Knepley PetscObject obj; 355892d50984SMatthew G. Knepley PetscClassId id; 355992d50984SMatthew G. Knepley PetscBool fimp; 356092d50984SMatthew G. Knepley 356192d50984SMatthew G. Knepley ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr); 356292d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 356392d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 356492d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 356592d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) {useFEM = PETSC_TRUE;} 3566364207b6SKarl Rupp if (id == PETSCFV_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Use of FVM with PCPATCH not yet implemented"); 356792d50984SMatthew G. Knepley } 356892d50984SMatthew G. Knepley if (useFEM) { 356992d50984SMatthew G. Knepley ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr); 357092d50984SMatthew G. Knepley ierr = DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree);CHKERRQ(ierr); 357192d50984SMatthew G. Knepley if (maxDegree <= 1) { 357292d50984SMatthew G. Knepley ierr = DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad);CHKERRQ(ierr); 357392d50984SMatthew G. Knepley if (affineQuad) { 357492d50984SMatthew G. Knepley ierr = DMSNESGetFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom);CHKERRQ(ierr); 357592d50984SMatthew G. Knepley } 357692d50984SMatthew G. Knepley } else { 357792d50984SMatthew G. Knepley ierr = PetscCalloc2(Nf,&quads,Nf,&geoms);CHKERRQ(ierr); 357892d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 357992d50984SMatthew G. Knepley PetscObject obj; 358092d50984SMatthew G. Knepley PetscClassId id; 358192d50984SMatthew G. Knepley PetscBool fimp; 358292d50984SMatthew G. Knepley 358392d50984SMatthew G. Knepley ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr); 358492d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 358592d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 358692d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 358792d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 358892d50984SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 358992d50984SMatthew G. Knepley 359092d50984SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quads[f]);CHKERRQ(ierr); 359192d50984SMatthew G. Knepley ierr = PetscObjectReference((PetscObject)quads[f]);CHKERRQ(ierr); 359292d50984SMatthew G. Knepley ierr = DMSNESGetFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f]);CHKERRQ(ierr); 359392d50984SMatthew G. Knepley } 359492d50984SMatthew G. Knepley } 359592d50984SMatthew G. Knepley } 359692d50984SMatthew G. Knepley } 359792d50984SMatthew G. Knepley /* Loop over chunks */ 359892d50984SMatthew G. Knepley ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 359992d50984SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 360092d50984SMatthew G. Knepley if (useFEM) {ierr = ISCreate(PETSC_COMM_SELF, &chunkIS);CHKERRQ(ierr);} 360192d50984SMatthew G. Knepley numCells = cEnd - cStart; 360292d50984SMatthew G. Knepley numChunks = 1; 360392d50984SMatthew G. Knepley cellChunkSize = numCells/numChunks; 360492d50984SMatthew G. Knepley numChunks = PetscMin(1,numCells); 360592d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 3606c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 3607c0006e53SPatrick Farrell PetscReal *vol = NULL; 3608c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 360992d50984SMatthew G. Knepley PetscInt cS = cStart+chunk*cellChunkSize, cE = PetscMin(cS+cellChunkSize, cEnd), numCells = cE - cS, c; 3610c0006e53SPatrick Farrell PetscInt numFaces = 0; 361192d50984SMatthew G. Knepley 361292d50984SMatthew G. Knepley /* Extract field coefficients */ 361392d50984SMatthew G. Knepley if (useFEM) { 361492d50984SMatthew G. Knepley ierr = ISGetPointSubrange(chunkIS, cS, cE, cells);CHKERRQ(ierr); 361592d50984SMatthew G. Knepley ierr = DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a);CHKERRQ(ierr); 361692d50984SMatthew G. Knepley ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec);CHKERRQ(ierr); 361792d50984SMatthew G. Knepley ierr = PetscMemzero(elemVec, numCells*totDim * sizeof(PetscScalar));CHKERRQ(ierr); 361892d50984SMatthew G. Knepley } 361992d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 362092d50984SMatthew G. Knepley /* Loop over fields */ 362192d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 362292d50984SMatthew G. Knepley PetscObject obj; 362392d50984SMatthew G. Knepley PetscClassId id; 362492d50984SMatthew G. Knepley PetscBool fimp; 362592d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 362692d50984SMatthew G. Knepley 362792d50984SMatthew G. Knepley ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr); 362892d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 362992d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 363092d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 363192d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 363292d50984SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 363392d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 363492d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 363592d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 363692d50984SMatthew G. Knepley PetscInt Nq, Nb; 363792d50984SMatthew G. Knepley 363892d50984SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 363992d50984SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 364092d50984SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 364192d50984SMatthew G. Knepley blockSize = Nb; 364292d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 364392d50984SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 364492d50984SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 364592d50984SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 364692d50984SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 364792d50984SMatthew G. Knepley offset = numCells - Nr; 364892d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 364992d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 365092d50984SMatthew G. Knepley ierr = PetscFEGeomGetChunk(geom,0,offset,&chunkGeom);CHKERRQ(ierr); 36514bee2e38SMatthew G. Knepley ierr = PetscFEIntegrateResidual(prob, f, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec);CHKERRQ(ierr); 365292d50984SMatthew G. Knepley ierr = PetscFEGeomGetChunk(geom,offset,numCells,&chunkGeom);CHKERRQ(ierr); 36534bee2e38SMatthew G. Knepley ierr = PetscFEIntegrateResidual(prob, f, Nr, chunkGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, &elemVec[offset*totDim]);CHKERRQ(ierr); 365492d50984SMatthew G. Knepley ierr = PetscFEGeomRestoreChunk(geom,offset,numCells,&chunkGeom);CHKERRQ(ierr); 365592d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 365692d50984SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 365792d50984SMatthew G. Knepley 365892d50984SMatthew G. Knepley Ne = numFaces; 365992d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 366092d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 366192d50984SMatthew G. Knepley ierr = PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR);CHKERRQ(ierr); 366292d50984SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 366392d50984SMatthew G. Knepley } 366492d50984SMatthew G. Knepley /* Loop over domain */ 366592d50984SMatthew G. Knepley if (useFEM) { 366692d50984SMatthew G. Knepley /* Add elemVec to locX */ 366792d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 366892d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 366992d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 367092d50984SMatthew G. Knepley 367192d50984SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, name, totDim, &elemVec[cind*totDim]);CHKERRQ(ierr);} 367292d50984SMatthew G. Knepley if (ghostLabel) { 367392d50984SMatthew G. Knepley PetscInt ghostVal; 367492d50984SMatthew G. Knepley 367592d50984SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel,cell,&ghostVal);CHKERRQ(ierr); 367692d50984SMatthew G. Knepley if (ghostVal > 0) continue; 367792d50984SMatthew G. Knepley } 367892d50984SMatthew G. Knepley ierr = DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind*totDim], ADD_ALL_VALUES);CHKERRQ(ierr); 367992d50984SMatthew G. Knepley } 368092d50984SMatthew G. Knepley } 368192d50984SMatthew G. Knepley /* Handle time derivative */ 368292d50984SMatthew G. Knepley if (locX_t) { 368392d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 368492d50984SMatthew G. Knepley 368592d50984SMatthew G. Knepley ierr = VecGetArray(locF, &fa);CHKERRQ(ierr); 368692d50984SMatthew G. Knepley ierr = VecGetArray(locX_t, &x_t);CHKERRQ(ierr); 368792d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 368892d50984SMatthew G. Knepley PetscFV fv; 368992d50984SMatthew G. Knepley PetscObject obj; 369092d50984SMatthew G. Knepley PetscClassId id; 369192d50984SMatthew G. Knepley PetscInt pdim, d; 369292d50984SMatthew G. Knepley 369392d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 369492d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 369592d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 369692d50984SMatthew G. Knepley fv = (PetscFV) obj; 369792d50984SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 369892d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 369992d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 370092d50984SMatthew G. Knepley PetscScalar *u_t, *r; 370192d50984SMatthew G. Knepley 370292d50984SMatthew G. Knepley if (ghostLabel) { 370392d50984SMatthew G. Knepley PetscInt ghostVal; 370492d50984SMatthew G. Knepley 370592d50984SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel, cell, &ghostVal);CHKERRQ(ierr); 370692d50984SMatthew G. Knepley if (ghostVal > 0) continue; 370792d50984SMatthew G. Knepley } 370892d50984SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t);CHKERRQ(ierr); 370992d50984SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cell, f, fa, &r);CHKERRQ(ierr); 371092d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 371192d50984SMatthew G. Knepley } 371292d50984SMatthew G. Knepley } 371392d50984SMatthew G. Knepley ierr = VecRestoreArray(locX_t, &x_t);CHKERRQ(ierr); 371492d50984SMatthew G. Knepley ierr = VecRestoreArray(locF, &fa);CHKERRQ(ierr); 371592d50984SMatthew G. Knepley } 371692d50984SMatthew G. Knepley if (useFEM) { 371792d50984SMatthew G. Knepley ierr = DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a);CHKERRQ(ierr); 371892d50984SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec);CHKERRQ(ierr); 371992d50984SMatthew G. Knepley } 372092d50984SMatthew G. Knepley } 372192d50984SMatthew G. Knepley if (useFEM) {ierr = ISDestroy(&chunkIS);CHKERRQ(ierr);} 372292d50984SMatthew G. Knepley ierr = ISRestorePointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 372392d50984SMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */ 372492d50984SMatthew G. Knepley if (useFEM) { 372592d50984SMatthew G. Knepley if (maxDegree <= 1) { 372692d50984SMatthew G. Knepley ierr = DMSNESRestoreFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom);CHKERRQ(ierr); 372792d50984SMatthew G. Knepley ierr = PetscQuadratureDestroy(&affineQuad);CHKERRQ(ierr); 372892d50984SMatthew G. Knepley } else { 372992d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 373092d50984SMatthew G. Knepley ierr = DMSNESRestoreFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f]);CHKERRQ(ierr); 373192d50984SMatthew G. Knepley ierr = PetscQuadratureDestroy(&quads[f]);CHKERRQ(ierr); 373292d50984SMatthew G. Knepley } 373392d50984SMatthew G. Knepley ierr = PetscFree2(quads,geoms);CHKERRQ(ierr); 373492d50984SMatthew G. Knepley } 373592d50984SMatthew G. Knepley } 373692d50984SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_ResidualFEM,dm,0,0,0);CHKERRQ(ierr); 373792d50984SMatthew G. Knepley PetscFunctionReturn(0); 373892d50984SMatthew G. Knepley } 373992d50984SMatthew G. Knepley 3740a1cf66bbSMatthew G. Knepley /* 3741a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 3742a1cf66bbSMatthew G. Knepley 3743a1cf66bbSMatthew G. Knepley X - The local solution vector 3744a1cf66bbSMatthew G. Knepley X_t - The local solution time derviative vector, or NULL 3745a1cf66bbSMatthew G. Knepley */ 3746a1cf66bbSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, 3747a1cf66bbSMatthew G. Knepley PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 3748a1cf66bbSMatthew G. Knepley { 3749a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3750a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 3751a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 3752a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 3753a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 3754a1cf66bbSMatthew G. Knepley Vec A; 3755a1cf66bbSMatthew G. Knepley DMField coordField; 3756a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 3757a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 3758a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 3759a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 37609b2fc754SMatthew G. Knepley PetscBool hasJac, hasPrec, hasDyn, assembleJac, isMatIS, isMatISP, *isFE, hasFV = PETSC_FALSE; 3761a1cf66bbSMatthew G. Knepley const PetscInt *cells; 37629b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 3763a1cf66bbSMatthew G. Knepley PetscErrorCode ierr; 3764a1cf66bbSMatthew G. Knepley 3765a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3766a1cf66bbSMatthew G. Knepley CHKMEMQ; 3767a1cf66bbSMatthew G. Knepley ierr = ISGetLocalSize(cellIS, &numCells);CHKERRQ(ierr); 3768a1cf66bbSMatthew G. Knepley ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 3769a1cf66bbSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_JacobianFEM,dm,0,0,0);CHKERRQ(ierr); 3770a1cf66bbSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 3771a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 3772a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 3773a1cf66bbSMatthew G. Knepley if (dmAux) { 3774a1cf66bbSMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 3775a1cf66bbSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 3776a1cf66bbSMatthew G. Knepley } 3777a1cf66bbSMatthew G. Knepley /* Get flags */ 3778a1cf66bbSMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 3779a1cf66bbSMatthew G. Knepley ierr = DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE);CHKERRQ(ierr); 3780a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 3781a1cf66bbSMatthew G. Knepley PetscObject disc; 3782a1cf66bbSMatthew G. Knepley PetscClassId id; 3783a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldI, &disc);CHKERRQ(ierr); 3784a1cf66bbSMatthew G. Knepley ierr = PetscObjectGetClassId(disc, &id);CHKERRQ(ierr); 3785a1cf66bbSMatthew G. Knepley if (id == PETSCFE_CLASSID) {isFE[fieldI] = PETSC_TRUE;} 3786a1cf66bbSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {hasFV = PETSC_TRUE; isFE[fieldI] = PETSC_FALSE;} 3787a1cf66bbSMatthew G. Knepley } 3788a1cf66bbSMatthew G. Knepley ierr = PetscDSHasJacobian(prob, &hasJac);CHKERRQ(ierr); 3789a1cf66bbSMatthew G. Knepley ierr = PetscDSHasJacobianPreconditioner(prob, &hasPrec);CHKERRQ(ierr); 3790a1cf66bbSMatthew G. Knepley ierr = PetscDSHasDynamicJacobian(prob, &hasDyn);CHKERRQ(ierr); 3791a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 3792a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 3793a1cf66bbSMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) Jac, MATIS, &isMatIS);CHKERRQ(ierr); 3794a1cf66bbSMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) JacP, MATIS, &isMatISP);CHKERRQ(ierr); 3795a1cf66bbSMatthew G. Knepley /* Setup input data and temp arrays (should be DMGetWorkArray) */ 3796a1cf66bbSMatthew G. Knepley if (isMatISP || isMatISP) {ierr = DMPlexGetSubdomainSection(dm, &globalSection);CHKERRQ(ierr);} 3797a1cf66bbSMatthew G. Knepley if (isMatIS) {ierr = MatISGetLocalMat(Jac, &J);CHKERRQ(ierr);} 3798a1cf66bbSMatthew G. Knepley if (isMatISP) {ierr = MatISGetLocalMat(JacP, &JP);CHKERRQ(ierr);} 3799a1cf66bbSMatthew G. Knepley if (hasFV) {ierr = MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE);CHKERRQ(ierr);} /* No allocated space for FV stuff, so ignore the zero entries */ 3800a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 3801a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 3802a1cf66bbSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 3803a1cf66bbSMatthew G. Knepley if (probAux) {ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);} 3804a1cf66bbSMatthew G. Knepley CHKMEMQ; 3805a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 3806a1cf66bbSMatthew G. Knepley if (isFE[0]) { 3807a1cf66bbSMatthew G. Knepley PetscFE fe; 3808a1cf66bbSMatthew G. Knepley PetscQuadrature q; 3809a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 3810a1cf66bbSMatthew G. Knepley 3811a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe);CHKERRQ(ierr); 3812a1cf66bbSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 3813a1cf66bbSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL);CHKERRQ(ierr); 3814a1cf66bbSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 3815a1cf66bbSMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 3816a1cf66bbSMatthew G. Knepley blockSize = Nb*numQuadPoints; 3817a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 3818a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 3819a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 3820a1cf66bbSMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 3821a1cf66bbSMatthew G. Knepley } else { 3822a1cf66bbSMatthew G. Knepley chunkSize = numCells; 3823a1cf66bbSMatthew G. Knepley numChunks = 1; 3824a1cf66bbSMatthew G. Knepley } 3825a1cf66bbSMatthew G. Knepley /* Get work space */ 3826a1cf66bbSMatthew G. Knepley wsz = (((X?1:0) + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize; 3827a1cf66bbSMatthew G. Knepley ierr = DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work);CHKERRQ(ierr); 3828a1cf66bbSMatthew G. Knepley ierr = PetscMemzero(work, wsz * sizeof(PetscScalar));CHKERRQ(ierr); 3829a1cf66bbSMatthew G. Knepley off = 0; 3830a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize*totDim, off += sz, work+off-sz) : NULL; 3831a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize*totDim, off += sz, work+off-sz) : NULL; 3832a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize*totDimAux, off += sz, work+off-sz) : NULL; 3833a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 3834a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 3835a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 3836a1cf66bbSMatthew G. Knepley if (off != wsz) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %D should be %D", off, wsz); 3837a1cf66bbSMatthew G. Knepley /* Setup geometry */ 3838a1cf66bbSMatthew G. Knepley ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr); 38399b2fc754SMatthew G. Knepley ierr = DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree);CHKERRQ(ierr); 38409b2fc754SMatthew G. Knepley if (maxDegree <= 1) {ierr = DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom);CHKERRQ(ierr);} 3841a1cf66bbSMatthew G. Knepley if (!qGeom) { 3842a1cf66bbSMatthew G. Knepley PetscFE fe; 3843a1cf66bbSMatthew G. Knepley 3844a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe);CHKERRQ(ierr); 3845a1cf66bbSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &qGeom);CHKERRQ(ierr); 3846a1cf66bbSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) qGeom);CHKERRQ(ierr); 3847a1cf66bbSMatthew G. Knepley } 3848a1cf66bbSMatthew G. Knepley ierr = DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM);CHKERRQ(ierr); 3849a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 3850a1cf66bbSMatthew G. Knepley if (assembleJac) {ierr = MatZeroEntries(J);CHKERRQ(ierr);} 3851a1cf66bbSMatthew G. Knepley ierr = MatZeroEntries(JP);CHKERRQ(ierr); 3852a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 3853a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 3854a1cf66bbSMatthew G. Knepley PetscInt c; 3855a1cf66bbSMatthew G. Knepley 3856a1cf66bbSMatthew G. Knepley /* Extract values */ 3857a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 3858a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c+offCell] : c+offCell; 3859a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 3860a1cf66bbSMatthew G. Knepley PetscInt i; 3861a1cf66bbSMatthew G. Knepley 3862a1cf66bbSMatthew G. Knepley if (X) { 3863a1cf66bbSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, X, cell, NULL, &x);CHKERRQ(ierr); 3864a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 3865a1cf66bbSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x);CHKERRQ(ierr); 3866a1cf66bbSMatthew G. Knepley } 3867a1cf66bbSMatthew G. Knepley if (X_t) { 3868a1cf66bbSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t);CHKERRQ(ierr); 3869a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c*totDim+i] = x_t[i]; 3870a1cf66bbSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t);CHKERRQ(ierr); 3871a1cf66bbSMatthew G. Knepley } 3872a1cf66bbSMatthew G. Knepley if (dmAux) { 3873a1cf66bbSMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x);CHKERRQ(ierr); 3874a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 3875a1cf66bbSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x);CHKERRQ(ierr); 3876a1cf66bbSMatthew G. Knepley } 3877a1cf66bbSMatthew G. Knepley } 3878a1cf66bbSMatthew G. Knepley CHKMEMQ; 3879a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 3880a1cf66bbSMatthew G. Knepley PetscFE fe; 3881a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fe);CHKERRQ(ierr); 3882a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 38834bee2e38SMatthew G. Knepley if (hasJac) {ierr = PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat);CHKERRQ(ierr);} 38844bee2e38SMatthew G. Knepley if (hasPrec) {ierr = PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP);CHKERRQ(ierr);} 38854bee2e38SMatthew G. Knepley if (hasDyn) {ierr = PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD);CHKERRQ(ierr);} 3886a1cf66bbSMatthew G. Knepley } 3887a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 3888a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 3889a1cf66bbSMatthew G. Knepley PetscFV fv; 3890a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 3891a1cf66bbSMatthew G. Knepley 3892a1cf66bbSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, fieldI, &foff);CHKERRQ(ierr); 3893a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fv);CHKERRQ(ierr); 3894a1cf66bbSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 3895a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim*totDim) { 3896a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 3897a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 3898a1cf66bbSMatthew G. Knepley if (hasJac) {elemMat [eOffset+i*totDim+i] = 1.0;} 3899a1cf66bbSMatthew G. Knepley if (hasPrec) {elemMatP[eOffset+i*totDim+i] = 1.0;} 3900a1cf66bbSMatthew G. Knepley } 3901a1cf66bbSMatthew G. Knepley } 3902a1cf66bbSMatthew G. Knepley } 3903a1cf66bbSMatthew G. Knepley } 3904a1cf66bbSMatthew G. Knepley CHKMEMQ; 3905a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 3906a1cf66bbSMatthew G. Knepley if (hasDyn) {for (c = 0; c < chunkSize*totDim*totDim; ++c) elemMat[c] += X_tShift*elemMatD[c];} 3907a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 3908a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 3909a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c+offCell] : c+offCell; 3910a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 3911a1cf66bbSMatthew G. Knepley if (hasJac) {ierr = DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c-cStart)*totDim*totDim]);CHKERRQ(ierr);} 3912a1cf66bbSMatthew G. Knepley if (hasPrec) {ierr = DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c-cStart)*totDim*totDim]);CHKERRQ(ierr);} 3913a1cf66bbSMatthew G. Knepley } 3914a1cf66bbSMatthew G. Knepley if (assembleJac) {ierr = DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES);CHKERRQ(ierr);} 3915a1cf66bbSMatthew G. Knepley ierr = DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES);CHKERRQ(ierr); 3916a1cf66bbSMatthew G. Knepley } 3917a1cf66bbSMatthew G. Knepley CHKMEMQ; 3918a1cf66bbSMatthew G. Knepley } 3919a1cf66bbSMatthew G. Knepley /* Cleanup */ 3920a1cf66bbSMatthew G. Knepley ierr = DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM);CHKERRQ(ierr); 3921a1cf66bbSMatthew G. Knepley ierr = PetscQuadratureDestroy(&qGeom);CHKERRQ(ierr); 3922a1cf66bbSMatthew G. Knepley if (hasFV) {ierr = MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE);CHKERRQ(ierr);} 3923a1cf66bbSMatthew G. Knepley ierr = DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE);CHKERRQ(ierr); 3924a1cf66bbSMatthew G. Knepley ierr = DMRestoreWorkArray(dm, ((1 + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize, MPIU_SCALAR, &work);CHKERRQ(ierr); 3925a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 3926a1cf66bbSMatthew G. Knepley /* ierr = DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx);CHKERRQ(ierr); */ 3927a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 3928a1cf66bbSMatthew G. Knepley if (assembleJac) {ierr = MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);ierr = MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);} 3929a1cf66bbSMatthew G. Knepley ierr = MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);ierr = MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3930a1cf66bbSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_JacobianFEM,dm,0,0,0);CHKERRQ(ierr); 3931a1cf66bbSMatthew G. Knepley CHKMEMQ; 3932a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3933a1cf66bbSMatthew G. Knepley } 3934